Date: 2019-12-26 00:06:28 CET, cola version: 1.3.2
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All available functions which can be applied to this res_list object:
res_list
#> A 'ConsensusPartitionList' object with 24 methods.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows are extracted by 'SD, CV, MAD, ATC' methods.
#> Subgroups are detected by 'hclust, kmeans, skmeans, pam, mclust, NMF' method.
#> Number of partitions are tried for k = 2, 3, 4, 5, 6.
#> Performed in total 30000 partitions by row resampling.
#>
#> Following methods can be applied to this 'ConsensusPartitionList' object:
#> [1] "cola_report" "collect_classes" "collect_plots" "collect_stats"
#> [5] "colnames" "functional_enrichment" "get_anno_col" "get_anno"
#> [9] "get_classes" "get_matrix" "get_membership" "get_stats"
#> [13] "is_best_k" "is_stable_k" "ncol" "nrow"
#> [17] "rownames" "show" "suggest_best_k" "test_to_known_factors"
#> [21] "top_rows_heatmap" "top_rows_overlap"
#>
#> You can get result for a single method by, e.g. object["SD", "hclust"] or object["SD:hclust"]
#> or a subset of methods by object[c("SD", "CV")], c("hclust", "kmeans")]
The call of run_all_consensus_partition_methods() was:
#> run_all_consensus_partition_methods(data = mat, mc.cores = 4)
Dimension of the input matrix:
mat = get_matrix(res_list)
dim(mat)
#> [1] 13930 285
The density distribution for each sample is visualized as in one column in the following heatmap. The clustering is based on the distance which is the Kolmogorov-Smirnov statistic between two distributions.
library(ComplexHeatmap)
densityHeatmap(mat, ylab = "value", cluster_columns = TRUE, show_column_names = FALSE,
mc.cores = 4)
Folowing table shows the best k (number of partitions) for each combination
of top-value methods and partition methods. Clicking on the method name in
the table goes to the section for a single combination of methods.
The cola vignette explains the definition of the metrics used for determining the best number of partitions.
suggest_best_k(res_list)
| The best k | 1-PAC | Mean silhouette | Concordance | Optional k | ||
|---|---|---|---|---|---|---|
| SD:hclust | 2 | 1.000 | 0.990 | 0.996 | ** | |
| SD:kmeans | 3 | 1.000 | 0.990 | 0.991 | ** | 2 |
| SD:mclust | 2 | 1.000 | 0.948 | 0.979 | ** | |
| SD:NMF | 2 | 1.000 | 1.000 | 1.000 | ** | |
| CV:hclust | 3 | 1.000 | 0.995 | 0.997 | ** | |
| CV:kmeans | 2 | 1.000 | 0.991 | 0.991 | ** | |
| CV:NMF | 2 | 1.000 | 0.982 | 0.993 | ** | |
| MAD:hclust | 2 | 1.000 | 0.997 | 0.999 | ** | |
| MAD:kmeans | 2 | 1.000 | 1.000 | 1.000 | ** | |
| MAD:NMF | 2 | 1.000 | 0.994 | 0.998 | ** | |
| ATC:hclust | 2 | 1.000 | 1.000 | 1.000 | ** | |
| ATC:kmeans | 3 | 1.000 | 0.969 | 0.978 | ** | 2 |
| ATC:skmeans | 2 | 1.000 | 1.000 | 1.000 | ** | |
| ATC:mclust | 3 | 1.000 | 0.994 | 0.998 | ** | 2 |
| MAD:pam | 6 | 0.983 | 0.949 | 0.975 | ** | 2,3,4 |
| CV:skmeans | 4 | 0.977 | 0.932 | 0.970 | ** | 2 |
| SD:pam | 5 | 0.964 | 0.931 | 0.957 | ** | 2 |
| MAD:skmeans | 4 | 0.953 | 0.920 | 0.966 | ** | 2,3 |
| MAD:mclust | 4 | 0.949 | 0.953 | 0.962 | * | 2 |
| ATC:pam | 5 | 0.941 | 0.901 | 0.943 | * | 2 |
| CV:pam | 5 | 0.926 | 0.929 | 0.964 | * | 2,3 |
| SD:skmeans | 3 | 0.918 | 0.934 | 0.965 | * | 2 |
| ATC:NMF | 2 | 0.707 | 0.973 | 0.962 | ||
| CV:mclust | 2 | 0.590 | 0.917 | 0.945 |
**: 1-PAC > 0.95, *: 1-PAC > 0.9
Cumulative distribution function curves of consensus matrix for all methods.
collect_plots(res_list, fun = plot_ecdf)
Consensus heatmaps for all methods. (What is a consensus heatmap?)
collect_plots(res_list, k = 2, fun = consensus_heatmap, mc.cores = 4)
collect_plots(res_list, k = 3, fun = consensus_heatmap, mc.cores = 4)
collect_plots(res_list, k = 4, fun = consensus_heatmap, mc.cores = 4)
collect_plots(res_list, k = 5, fun = consensus_heatmap, mc.cores = 4)
collect_plots(res_list, k = 6, fun = consensus_heatmap, mc.cores = 4)
Membership heatmaps for all methods. (What is a membership heatmap?)
collect_plots(res_list, k = 2, fun = membership_heatmap, mc.cores = 4)
collect_plots(res_list, k = 3, fun = membership_heatmap, mc.cores = 4)
collect_plots(res_list, k = 4, fun = membership_heatmap, mc.cores = 4)
collect_plots(res_list, k = 5, fun = membership_heatmap, mc.cores = 4)
collect_plots(res_list, k = 6, fun = membership_heatmap, mc.cores = 4)
Signature heatmaps for all methods. (What is a signature heatmap?)
Note in following heatmaps, rows are scaled.
collect_plots(res_list, k = 2, fun = get_signatures, mc.cores = 4)
collect_plots(res_list, k = 3, fun = get_signatures, mc.cores = 4)
collect_plots(res_list, k = 4, fun = get_signatures, mc.cores = 4)
collect_plots(res_list, k = 5, fun = get_signatures, mc.cores = 4)
collect_plots(res_list, k = 6, fun = get_signatures, mc.cores = 4)
The statistics used for measuring the stability of consensus partitioning. (How are they defined?)
get_stats(res_list, k = 2)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> SD:NMF 2 1.000 1.000 1.000 0.376 0.625 0.625
#> CV:NMF 2 1.000 0.982 0.993 0.384 0.614 0.614
#> MAD:NMF 2 1.000 0.994 0.998 0.379 0.621 0.621
#> ATC:NMF 2 0.707 0.973 0.962 0.342 0.621 0.621
#> SD:skmeans 2 1.000 0.995 0.998 0.398 0.604 0.604
#> CV:skmeans 2 0.922 0.939 0.975 0.425 0.583 0.583
#> MAD:skmeans 2 1.000 0.988 0.995 0.403 0.598 0.598
#> ATC:skmeans 2 1.000 1.000 1.000 0.390 0.611 0.611
#> SD:mclust 2 1.000 0.948 0.979 0.398 0.586 0.586
#> CV:mclust 2 0.590 0.917 0.945 0.403 0.625 0.625
#> MAD:mclust 2 1.000 1.000 1.000 0.376 0.625 0.625
#> ATC:mclust 2 1.000 1.000 1.000 0.376 0.625 0.625
#> SD:kmeans 2 1.000 1.000 1.000 0.380 0.621 0.621
#> CV:kmeans 2 1.000 0.991 0.991 0.383 0.611 0.611
#> MAD:kmeans 2 1.000 1.000 1.000 0.383 0.618 0.618
#> ATC:kmeans 2 1.000 0.999 1.000 0.376 0.625 0.625
#> SD:pam 2 1.000 1.000 1.000 0.380 0.621 0.621
#> CV:pam 2 1.000 0.987 0.994 0.392 0.611 0.611
#> MAD:pam 2 1.000 1.000 1.000 0.383 0.618 0.618
#> ATC:pam 2 1.000 1.000 1.000 0.376 0.625 0.625
#> SD:hclust 2 1.000 0.990 0.996 0.382 0.618 0.618
#> CV:hclust 2 0.598 0.900 0.945 0.100 0.972 0.972
#> MAD:hclust 2 1.000 0.997 0.999 0.384 0.618 0.618
#> ATC:hclust 2 1.000 1.000 1.000 0.376 0.625 0.625
get_stats(res_list, k = 3)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> SD:NMF 3 0.642 0.738 0.879 0.4261 0.835 0.735
#> CV:NMF 3 0.746 0.871 0.936 0.4836 0.822 0.711
#> MAD:NMF 3 0.842 0.902 0.955 0.7216 0.717 0.546
#> ATC:NMF 3 0.534 0.734 0.831 0.3784 0.995 0.992
#> SD:skmeans 3 0.918 0.934 0.965 0.2508 0.920 0.867
#> CV:skmeans 3 0.696 0.831 0.900 0.5323 0.730 0.545
#> MAD:skmeans 3 0.950 0.931 0.970 0.6356 0.726 0.548
#> ATC:skmeans 3 0.806 0.847 0.920 0.2925 0.910 0.853
#> SD:mclust 3 0.763 0.939 0.941 0.2241 0.963 0.937
#> CV:mclust 3 0.609 0.755 0.868 0.3802 0.864 0.782
#> MAD:mclust 3 0.750 0.900 0.926 0.5737 0.800 0.680
#> ATC:mclust 3 1.000 0.994 0.998 0.1670 0.940 0.904
#> SD:kmeans 3 1.000 0.990 0.991 0.1038 0.958 0.932
#> CV:kmeans 3 0.631 0.884 0.896 0.5145 0.769 0.623
#> MAD:kmeans 3 0.731 0.861 0.870 0.5999 0.768 0.624
#> ATC:kmeans 3 1.000 0.969 0.978 0.1246 0.959 0.935
#> SD:pam 3 0.852 0.919 0.961 0.7237 0.723 0.554
#> CV:pam 3 0.965 0.946 0.974 0.6797 0.730 0.558
#> MAD:pam 3 0.973 0.957 0.982 0.7087 0.728 0.559
#> ATC:pam 3 0.730 0.891 0.934 0.7147 0.726 0.561
#> SD:hclust 3 1.000 0.994 0.997 0.0205 0.996 0.994
#> CV:hclust 3 1.000 0.995 0.997 3.1053 0.615 0.604
#> MAD:hclust 3 1.000 0.974 0.987 0.0911 0.979 0.967
#> ATC:hclust 3 1.000 1.000 1.000 0.0278 0.990 0.983
get_stats(res_list, k = 4)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> SD:NMF 4 0.677 0.770 0.899 -0.0145 0.944 0.890
#> CV:NMF 4 0.590 0.711 0.800 0.1898 0.863 0.703
#> MAD:NMF 4 0.745 0.737 0.878 0.0963 0.895 0.714
#> ATC:NMF 4 0.635 0.671 0.813 0.0769 0.896 0.831
#> SD:skmeans 4 0.757 0.768 0.902 0.3394 0.771 0.581
#> CV:skmeans 4 0.977 0.932 0.970 0.1417 0.875 0.652
#> MAD:skmeans 4 0.953 0.920 0.966 0.1260 0.888 0.683
#> ATC:skmeans 4 0.766 0.795 0.917 0.2847 0.761 0.564
#> SD:mclust 4 0.675 0.768 0.877 0.3223 0.780 0.600
#> CV:mclust 4 0.786 0.870 0.928 0.2295 0.831 0.658
#> MAD:mclust 4 0.949 0.953 0.962 0.2358 0.829 0.598
#> ATC:mclust 4 0.590 0.714 0.844 0.4695 0.763 0.581
#> SD:kmeans 4 0.720 0.923 0.880 0.4256 0.753 0.573
#> CV:kmeans 4 0.716 0.815 0.857 0.1538 0.996 0.988
#> MAD:kmeans 4 0.826 0.873 0.843 0.1403 0.850 0.617
#> ATC:kmeans 4 0.682 0.686 0.872 0.3799 0.807 0.673
#> SD:pam 4 0.811 0.745 0.879 0.0667 0.967 0.905
#> CV:pam 4 0.829 0.844 0.866 0.0821 0.867 0.633
#> MAD:pam 4 1.000 0.973 0.981 0.1440 0.874 0.652
#> ATC:pam 4 0.843 0.906 0.930 0.1502 0.826 0.550
#> SD:hclust 4 1.000 0.989 0.995 0.0186 0.990 0.983
#> CV:hclust 4 1.000 0.993 0.999 0.0141 0.995 0.991
#> MAD:hclust 4 1.000 0.978 0.987 0.0191 0.990 0.983
#> ATC:hclust 4 1.000 0.996 0.998 0.0103 0.995 0.992
get_stats(res_list, k = 5)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> SD:NMF 5 0.635 0.751 0.886 0.03350 0.954 0.909
#> CV:NMF 5 0.664 0.677 0.806 0.09511 0.833 0.557
#> MAD:NMF 5 0.705 0.717 0.818 0.05427 0.834 0.537
#> ATC:NMF 5 0.580 0.653 0.779 0.07197 0.991 0.982
#> SD:skmeans 5 0.809 0.860 0.923 0.05423 0.832 0.584
#> CV:skmeans 5 0.887 0.845 0.910 0.03441 0.957 0.837
#> MAD:skmeans 5 0.852 0.779 0.899 0.03605 0.951 0.818
#> ATC:skmeans 5 0.736 0.859 0.910 0.07468 0.893 0.709
#> SD:mclust 5 0.583 0.594 0.757 0.13859 0.867 0.620
#> CV:mclust 5 0.812 0.816 0.894 0.11802 0.863 0.607
#> MAD:mclust 5 0.821 0.709 0.843 0.05063 0.983 0.936
#> ATC:mclust 5 0.589 0.704 0.718 0.06543 0.823 0.551
#> SD:kmeans 5 0.594 0.639 0.784 0.13545 0.942 0.834
#> CV:kmeans 5 0.778 0.815 0.836 0.06977 0.866 0.649
#> MAD:kmeans 5 0.739 0.875 0.861 0.05580 0.958 0.845
#> ATC:kmeans 5 0.567 0.714 0.786 0.11428 0.875 0.697
#> SD:pam 5 0.964 0.931 0.957 0.07850 0.859 0.601
#> CV:pam 5 0.926 0.929 0.964 0.05697 0.974 0.901
#> MAD:pam 5 0.899 0.914 0.942 0.04543 0.958 0.833
#> ATC:pam 5 0.941 0.901 0.943 0.03305 0.981 0.927
#> SD:hclust 5 1.000 0.985 0.996 0.00464 1.000 1.000
#> CV:hclust 5 1.000 0.987 0.998 0.00157 1.000 1.000
#> MAD:hclust 5 0.871 0.956 0.971 0.03900 1.000 1.000
#> ATC:hclust 5 1.000 0.989 1.000 0.00319 1.000 1.000
get_stats(res_list, k = 6)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> SD:NMF 6 0.609 0.753 0.873 0.03196 0.990 0.978
#> CV:NMF 6 0.736 0.679 0.819 0.04626 0.913 0.677
#> MAD:NMF 6 0.711 0.706 0.821 0.02530 0.968 0.879
#> ATC:NMF 6 0.550 0.635 0.755 0.03879 0.930 0.865
#> SD:skmeans 6 0.810 0.807 0.902 0.03690 0.987 0.956
#> CV:skmeans 6 0.841 0.747 0.845 0.02794 0.977 0.903
#> MAD:skmeans 6 0.820 0.718 0.849 0.03046 0.971 0.881
#> ATC:skmeans 6 0.733 0.789 0.880 0.02940 0.991 0.968
#> SD:mclust 6 0.621 0.576 0.705 0.06270 0.880 0.563
#> CV:mclust 6 0.845 0.822 0.890 0.05595 0.908 0.632
#> MAD:mclust 6 0.837 0.805 0.881 0.04271 0.931 0.727
#> ATC:mclust 6 0.673 0.617 0.734 0.08150 0.879 0.643
#> SD:kmeans 6 0.626 0.631 0.770 0.07835 0.914 0.748
#> CV:kmeans 6 0.755 0.797 0.843 0.05157 0.942 0.788
#> MAD:kmeans 6 0.730 0.823 0.847 0.04303 1.000 1.000
#> ATC:kmeans 6 0.583 0.637 0.761 0.08464 0.928 0.789
#> SD:pam 6 0.872 0.868 0.917 0.05522 0.961 0.839
#> CV:pam 6 0.814 0.750 0.820 0.03347 0.948 0.792
#> MAD:pam 6 0.983 0.949 0.975 0.04058 0.973 0.873
#> ATC:pam 6 0.871 0.835 0.883 0.03561 0.954 0.810
#> SD:hclust 6 1.000 0.981 0.998 0.00220 1.000 1.000
#> CV:hclust 6 1.000 0.986 0.997 0.00442 1.000 1.000
#> MAD:hclust 6 0.815 0.931 0.960 0.05264 0.985 0.974
#> ATC:hclust 6 1.000 0.986 1.000 0.01323 0.995 0.991
Following heatmap plots the partition for each combination of methods and the lightness correspond to the silhouette scores for samples in each method. On top the consensus subgroup is inferred from all methods by taking the mean silhouette scores as weight.
collect_stats(res_list, k = 2)
collect_stats(res_list, k = 3)
collect_stats(res_list, k = 4)
collect_stats(res_list, k = 5)
collect_stats(res_list, k = 6)
Collect partitions from all methods:
collect_classes(res_list, k = 2)
collect_classes(res_list, k = 3)
collect_classes(res_list, k = 4)
collect_classes(res_list, k = 5)
collect_classes(res_list, k = 6)
Overlap of top rows from different top-row methods:
top_rows_overlap(res_list, top_n = 1000, method = "euler")
top_rows_overlap(res_list, top_n = 2000, method = "euler")
top_rows_overlap(res_list, top_n = 3000, method = "euler")
top_rows_overlap(res_list, top_n = 4000, method = "euler")
top_rows_overlap(res_list, top_n = 5000, method = "euler")
Also visualize the correspondance of rankings between different top-row methods:
top_rows_overlap(res_list, top_n = 1000, method = "correspondance")
top_rows_overlap(res_list, top_n = 2000, method = "correspondance")
top_rows_overlap(res_list, top_n = 3000, method = "correspondance")
top_rows_overlap(res_list, top_n = 4000, method = "correspondance")
top_rows_overlap(res_list, top_n = 5000, method = "correspondance")
Heatmaps of the top rows:
top_rows_heatmap(res_list, top_n = 1000)
top_rows_heatmap(res_list, top_n = 2000)
top_rows_heatmap(res_list, top_n = 3000)
top_rows_heatmap(res_list, top_n = 4000)
top_rows_heatmap(res_list, top_n = 5000)
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["SD", "hclust"]
# you can also extract it by
# res = res_list["SD:hclust"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'SD' method.
#> Subgroups are detected by 'hclust' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 2.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1 0.990 0.996 0.38229 0.618 0.618
#> 3 3 1 0.994 0.997 0.02045 0.996 0.994
#> 4 4 1 0.989 0.995 0.01856 0.990 0.983
#> 5 5 1 0.985 0.996 0.00464 1.000 1.000
#> 6 6 1 0.981 0.998 0.00220 1.000 1.000
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 2
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0.000 0.998 0.000 1.000
#> SRR1201590 2 0.000 0.998 0.000 1.000
#> SRR1201593 2 0.000 0.998 0.000 1.000
#> SRR1201592 2 0.000 0.998 0.000 1.000
#> SRR1201617 2 0.000 0.998 0.000 1.000
#> SRR1201616 2 0.000 0.998 0.000 1.000
#> SRR1201619 2 0.000 0.998 0.000 1.000
#> SRR1201618 2 0.000 0.998 0.000 1.000
#> SRR1201620 2 0.000 0.998 0.000 1.000
#> SRR1201621 2 0.000 0.998 0.000 1.000
#> SRR1201623 2 0.000 0.998 0.000 1.000
#> SRR1201622 2 0.000 0.998 0.000 1.000
#> SRR1201624 2 0.000 0.998 0.000 1.000
#> SRR1201625 2 0.000 0.998 0.000 1.000
#> SRR1201626 1 0.921 0.496 0.664 0.336
#> SRR1201627 2 0.662 0.791 0.172 0.828
#> SRR1201628 2 0.000 0.998 0.000 1.000
#> SRR1201629 2 0.000 0.998 0.000 1.000
#> SRR1201630 2 0.000 0.998 0.000 1.000
#> SRR1201631 2 0.000 0.998 0.000 1.000
#> SRR1201641 2 0.000 0.998 0.000 1.000
#> SRR1201640 2 0.000 0.998 0.000 1.000
#> SRR1201643 2 0.000 0.998 0.000 1.000
#> SRR1201644 2 0.000 0.998 0.000 1.000
#> SRR1201661 2 0.000 0.998 0.000 1.000
#> SRR1201662 2 0.000 0.998 0.000 1.000
#> SRR1201663 2 0.000 0.998 0.000 1.000
#> SRR1201664 2 0.000 0.998 0.000 1.000
#> SRR1201665 2 0.000 0.998 0.000 1.000
#> SRR1201666 2 0.000 0.998 0.000 1.000
#> SRR1201667 2 0.000 0.998 0.000 1.000
#> SRR1201668 2 0.000 0.998 0.000 1.000
#> SRR1201670 2 0.000 0.998 0.000 1.000
#> SRR1201669 2 0.000 0.998 0.000 1.000
#> SRR1201673 2 0.000 0.998 0.000 1.000
#> SRR1201672 2 0.000 0.998 0.000 1.000
#> SRR1201671 2 0.000 0.998 0.000 1.000
#> SRR1201677 2 0.000 0.998 0.000 1.000
#> SRR1201676 2 0.000 0.998 0.000 1.000
#> SRR1201675 2 0.000 0.998 0.000 1.000
#> SRR1201674 2 0.000 0.998 0.000 1.000
#> SRR1201678 2 0.000 0.998 0.000 1.000
#> SRR1201682 2 0.000 0.998 0.000 1.000
#> SRR1201683 2 0.000 0.998 0.000 1.000
#> SRR1201680 2 0.000 0.998 0.000 1.000
#> SRR1201681 2 0.000 0.998 0.000 1.000
#> SRR1201679 2 0.000 0.998 0.000 1.000
#> SRR1201686 2 0.000 0.998 0.000 1.000
#> SRR1201687 2 0.000 0.998 0.000 1.000
#> SRR1201688 2 0.000 0.998 0.000 1.000
#> SRR1201689 2 0.000 0.998 0.000 1.000
#> SRR1201685 2 0.000 0.998 0.000 1.000
#> SRR1201692 2 0.000 0.998 0.000 1.000
#> SRR1201691 2 0.000 0.998 0.000 1.000
#> SRR1201690 2 0.000 0.998 0.000 1.000
#> SRR1201696 2 0.000 0.998 0.000 1.000
#> SRR1201695 2 0.000 0.998 0.000 1.000
#> SRR1201694 2 0.000 0.998 0.000 1.000
#> SRR1201693 2 0.000 0.998 0.000 1.000
#> SRR1201697 2 0.000 0.998 0.000 1.000
#> SRR1201698 2 0.000 0.998 0.000 1.000
#> SRR1201700 2 0.000 0.998 0.000 1.000
#> SRR1201708 2 0.000 0.998 0.000 1.000
#> SRR1201707 2 0.000 0.998 0.000 1.000
#> SRR1201706 2 0.000 0.998 0.000 1.000
#> SRR1201702 2 0.000 0.998 0.000 1.000
#> SRR1201705 2 0.000 0.998 0.000 1.000
#> SRR1201701 2 0.000 0.998 0.000 1.000
#> SRR1201704 2 0.000 0.998 0.000 1.000
#> SRR1201703 2 0.000 0.998 0.000 1.000
#> SRR1201716 2 0.000 0.998 0.000 1.000
#> SRR1201715 2 0.000 0.998 0.000 1.000
#> SRR1201717 2 0.000 0.998 0.000 1.000
#> SRR1201712 2 0.000 0.998 0.000 1.000
#> SRR1201709 2 0.000 0.998 0.000 1.000
#> SRR1201711 2 0.000 0.998 0.000 1.000
#> SRR1201714 2 0.000 0.998 0.000 1.000
#> SRR1201713 2 0.000 0.998 0.000 1.000
#> SRR1201710 2 0.000 0.998 0.000 1.000
#> SRR1201719 2 0.000 0.998 0.000 1.000
#> SRR1201718 2 0.000 0.998 0.000 1.000
#> SRR1201721 2 0.000 0.998 0.000 1.000
#> SRR1201720 2 0.000 0.998 0.000 1.000
#> SRR1201723 2 0.000 0.998 0.000 1.000
#> SRR1201722 2 0.000 0.998 0.000 1.000
#> SRR1201725 2 0.000 0.998 0.000 1.000
#> SRR1201724 2 0.000 0.998 0.000 1.000
#> SRR1201726 2 0.000 0.998 0.000 1.000
#> SRR1201727 2 0.000 0.998 0.000 1.000
#> SRR1201731 2 0.000 0.998 0.000 1.000
#> SRR1201730 2 0.000 0.998 0.000 1.000
#> SRR1201734 2 0.000 0.998 0.000 1.000
#> SRR1201733 2 0.000 0.998 0.000 1.000
#> SRR1201736 2 0.000 0.998 0.000 1.000
#> SRR1201737 2 0.000 0.998 0.000 1.000
#> SRR1201739 2 0.000 0.998 0.000 1.000
#> SRR1201738 2 0.000 0.998 0.000 1.000
#> SRR1201742 2 0.000 0.998 0.000 1.000
#> SRR1201743 2 0.000 0.998 0.000 1.000
#> SRR1201745 2 0.000 0.998 0.000 1.000
#> SRR1201744 2 0.000 0.998 0.000 1.000
#> SRR1201749 2 0.000 0.998 0.000 1.000
#> SRR1201750 2 0.000 0.998 0.000 1.000
#> SRR1201752 2 0.000 0.998 0.000 1.000
#> SRR1201751 2 0.000 0.998 0.000 1.000
#> SRR1201754 2 0.000 0.998 0.000 1.000
#> SRR1201753 2 0.000 0.998 0.000 1.000
#> SRR1201758 2 0.000 0.998 0.000 1.000
#> SRR1201759 2 0.000 0.998 0.000 1.000
#> SRR1201760 2 0.000 0.998 0.000 1.000
#> SRR1201761 2 0.000 0.998 0.000 1.000
#> SRR1201763 2 0.644 0.803 0.164 0.836
#> SRR1201762 1 0.946 0.431 0.636 0.364
#> SRR1201764 2 0.000 0.998 0.000 1.000
#> SRR1201766 2 0.000 0.998 0.000 1.000
#> SRR1201768 2 0.000 0.998 0.000 1.000
#> SRR1201769 2 0.000 0.998 0.000 1.000
#> SRR1201767 2 0.000 0.998 0.000 1.000
#> SRR1201770 2 0.000 0.998 0.000 1.000
#> SRR1201771 2 0.000 0.998 0.000 1.000
#> SRR1201772 2 0.000 0.998 0.000 1.000
#> SRR1201773 2 0.000 0.998 0.000 1.000
#> SRR1201774 2 0.000 0.998 0.000 1.000
#> SRR1201786 2 0.000 0.998 0.000 1.000
#> SRR1201784 2 0.000 0.998 0.000 1.000
#> SRR1201785 2 0.000 0.998 0.000 1.000
#> SRR1201778 2 0.000 0.998 0.000 1.000
#> SRR1201779 2 0.000 0.998 0.000 1.000
#> SRR1201781 2 0.000 0.998 0.000 1.000
#> SRR1201780 2 0.000 0.998 0.000 1.000
#> SRR1201783 2 0.000 0.998 0.000 1.000
#> SRR1201782 2 0.000 0.998 0.000 1.000
#> SRR1201798 2 0.000 0.998 0.000 1.000
#> SRR1201797 2 0.000 0.998 0.000 1.000
#> SRR1201796 2 0.000 0.998 0.000 1.000
#> SRR1201795 2 0.000 0.998 0.000 1.000
#> SRR1201799 2 0.000 0.998 0.000 1.000
#> SRR1201794 2 0.000 0.998 0.000 1.000
#> SRR1201793 2 0.000 0.998 0.000 1.000
#> SRR1201792 2 0.000 0.998 0.000 1.000
#> SRR1201791 2 0.000 0.998 0.000 1.000
#> SRR1201807 2 0.000 0.998 0.000 1.000
#> SRR1201808 2 0.000 0.998 0.000 1.000
#> SRR1201803 2 0.000 0.998 0.000 1.000
#> SRR1201804 2 0.000 0.998 0.000 1.000
#> SRR1201805 2 0.000 0.998 0.000 1.000
#> SRR1201806 2 0.000 0.998 0.000 1.000
#> SRR1201801 2 0.000 0.998 0.000 1.000
#> SRR1201802 2 0.000 0.998 0.000 1.000
#> SRR1201800 2 0.000 0.998 0.000 1.000
#> SRR1201814 2 0.000 0.998 0.000 1.000
#> SRR1201816 2 0.000 0.998 0.000 1.000
#> SRR1201815 2 0.000 0.998 0.000 1.000
#> SRR1201819 2 0.000 0.998 0.000 1.000
#> SRR1201820 2 0.000 0.998 0.000 1.000
#> SRR1201813 2 0.000 0.998 0.000 1.000
#> SRR1201817 2 0.000 0.998 0.000 1.000
#> SRR1201818 2 0.000 0.998 0.000 1.000
#> SRR1201825 2 0.000 0.998 0.000 1.000
#> SRR1201827 2 0.000 0.998 0.000 1.000
#> SRR1201828 2 0.000 0.998 0.000 1.000
#> SRR1201826 2 0.000 0.998 0.000 1.000
#> SRR1201829 2 0.000 0.998 0.000 1.000
#> SRR1201830 2 0.000 0.998 0.000 1.000
#> SRR1201831 2 0.000 0.998 0.000 1.000
#> SRR1201832 2 0.000 0.998 0.000 1.000
#> SRR1201833 2 0.000 0.998 0.000 1.000
#> SRR1201865 2 0.000 0.998 0.000 1.000
#> SRR1201866 2 0.000 0.998 0.000 1.000
#> SRR1201867 2 0.000 0.998 0.000 1.000
#> SRR1201861 2 0.000 0.998 0.000 1.000
#> SRR1201862 2 0.000 0.998 0.000 1.000
#> SRR1201863 2 0.000 0.998 0.000 1.000
#> SRR1201859 2 0.000 0.998 0.000 1.000
#> SRR1201864 2 0.000 0.998 0.000 1.000
#> SRR1201860 2 0.000 0.998 0.000 1.000
#> SRR1201873 2 0.000 0.998 0.000 1.000
#> SRR1201871 2 0.000 0.998 0.000 1.000
#> SRR1201872 2 0.000 0.998 0.000 1.000
#> SRR1201980 2 0.000 0.998 0.000 1.000
#> SRR1201979 2 0.000 0.998 0.000 1.000
#> SRR1201982 2 0.000 0.998 0.000 1.000
#> SRR1201981 2 0.000 0.998 0.000 1.000
#> SRR1201998 2 0.000 0.998 0.000 1.000
#> SRR1201996 2 0.000 0.998 0.000 1.000
#> SRR1201997 2 0.000 0.998 0.000 1.000
#> SRR1202005 2 0.000 0.998 0.000 1.000
#> SRR1202006 2 0.000 0.998 0.000 1.000
#> SRR1202088 2 0.000 0.998 0.000 1.000
#> SRR1202087 2 0.000 0.998 0.000 1.000
#> SRR1202093 2 0.000 0.998 0.000 1.000
#> SRR1202092 2 0.000 0.998 0.000 1.000
#> SRR1202288 2 0.000 0.998 0.000 1.000
#> SRR1202289 2 0.000 0.998 0.000 1.000
#> SRR1202299 2 0.000 0.998 0.000 1.000
#> SRR1202298 2 0.000 0.998 0.000 1.000
#> SRR1202303 2 0.662 0.791 0.172 0.828
#> SRR1202372 2 0.000 0.998 0.000 1.000
#> SRR1202371 2 0.000 0.998 0.000 1.000
#> SRR1202563 2 0.000 0.998 0.000 1.000
#> SRR1202565 2 0.000 0.998 0.000 1.000
#> SRR1202564 2 0.000 0.998 0.000 1.000
#> SRR1202649 2 0.000 0.998 0.000 1.000
#> SRR1202650 2 0.000 0.998 0.000 1.000
#> SRR1202651 2 0.000 0.998 0.000 1.000
#> SRR1202843 1 0.000 0.990 1.000 0.000
#> SRR1202844 1 0.000 0.990 1.000 0.000
#> SRR1202845 2 0.000 0.998 0.000 1.000
#> SRR1202847 2 0.000 0.998 0.000 1.000
#> SRR1202846 2 0.000 0.998 0.000 1.000
#> SRR1202945 1 0.000 0.990 1.000 0.000
#> SRR1202949 1 0.000 0.990 1.000 0.000
#> SRR1202977 1 0.000 0.990 1.000 0.000
#> SRR1202978 1 0.000 0.990 1.000 0.000
#> SRR1202979 1 0.000 0.990 1.000 0.000
#> SRR1202990 1 0.000 0.990 1.000 0.000
#> SRR1202999 1 0.000 0.990 1.000 0.000
#> SRR1203005 1 0.000 0.990 1.000 0.000
#> SRR1203006 1 0.000 0.990 1.000 0.000
#> SRR1203007 1 0.000 0.990 1.000 0.000
#> SRR1203009 1 0.000 0.990 1.000 0.000
#> SRR1203008 1 0.000 0.990 1.000 0.000
#> SRR1203010 1 0.000 0.990 1.000 0.000
#> SRR1203011 1 0.000 0.990 1.000 0.000
#> SRR1203025 1 0.000 0.990 1.000 0.000
#> SRR1203026 1 0.000 0.990 1.000 0.000
#> SRR1203027 1 0.000 0.990 1.000 0.000
#> SRR1203061 1 0.000 0.990 1.000 0.000
#> SRR1203089 1 0.000 0.990 1.000 0.000
#> SRR1203125 1 0.000 0.990 1.000 0.000
#> SRR1203128 1 0.000 0.990 1.000 0.000
#> SRR1203129 1 0.000 0.990 1.000 0.000
#> SRR1203130 1 0.000 0.990 1.000 0.000
#> SRR1203132 2 0.000 0.998 0.000 1.000
#> SRR1203131 2 0.000 0.998 0.000 1.000
#> SRR1203133 1 0.000 0.990 1.000 0.000
#> SRR1203138 1 0.000 0.990 1.000 0.000
#> SRR1203760 1 0.000 0.990 1.000 0.000
#> SRR1203761 1 0.000 0.990 1.000 0.000
#> SRR1203770 1 0.000 0.990 1.000 0.000
#> SRR1203771 1 0.000 0.990 1.000 0.000
#> SRR1203772 1 0.000 0.990 1.000 0.000
#> SRR1203773 1 0.000 0.990 1.000 0.000
#> SRR1203774 1 0.000 0.990 1.000 0.000
#> SRR1203775 1 0.000 0.990 1.000 0.000
#> SRR1203800 1 0.000 0.990 1.000 0.000
#> SRR1203801 1 0.000 0.990 1.000 0.000
#> SRR1203802 1 0.000 0.990 1.000 0.000
#> SRR1203803 1 0.000 0.990 1.000 0.000
#> SRR1203804 1 0.000 0.990 1.000 0.000
#> SRR1203805 1 0.000 0.990 1.000 0.000
#> SRR1203806 1 0.000 0.990 1.000 0.000
#> SRR1203807 1 0.000 0.990 1.000 0.000
#> SRR1203808 1 0.000 0.990 1.000 0.000
#> SRR1203811 1 0.000 0.990 1.000 0.000
#> SRR1203812 1 0.000 0.990 1.000 0.000
#> SRR1203813 1 0.000 0.990 1.000 0.000
#> SRR1203814 1 0.000 0.990 1.000 0.000
#> SRR1203815 1 0.000 0.990 1.000 0.000
#> SRR1203816 1 0.000 0.990 1.000 0.000
#> SRR1203817 1 0.000 0.990 1.000 0.000
#> SRR1203818 1 0.000 0.990 1.000 0.000
#> SRR1203819 1 0.000 0.990 1.000 0.000
#> SRR1203822 1 0.000 0.990 1.000 0.000
#> SRR1203823 1 0.000 0.990 1.000 0.000
#> SRR1203824 1 0.000 0.990 1.000 0.000
#> SRR1203825 1 0.000 0.990 1.000 0.000
#> SRR1203826 1 0.000 0.990 1.000 0.000
#> SRR1203827 2 0.000 0.998 0.000 1.000
#> SRR1203828 1 0.000 0.990 1.000 0.000
#> SRR1203829 1 0.000 0.990 1.000 0.000
#> SRR1203830 1 0.000 0.990 1.000 0.000
#> SRR1203831 1 0.000 0.990 1.000 0.000
#> SRR1203832 1 0.000 0.990 1.000 0.000
#> SRR1203833 1 0.000 0.990 1.000 0.000
#> SRR1203834 1 0.000 0.990 1.000 0.000
#> SRR1203835 1 0.000 0.990 1.000 0.000
#> SRR1203836 1 0.000 0.990 1.000 0.000
#> SRR1203837 1 0.000 0.990 1.000 0.000
#> SRR1203838 1 0.000 0.990 1.000 0.000
#> SRR1203839 1 0.000 0.990 1.000 0.000
#> SRR1203842 2 0.000 0.998 0.000 1.000
#> SRR1203843 1 0.000 0.990 1.000 0.000
#> SRR1203845 2 0.000 0.998 0.000 1.000
#> SRR1203844 2 0.000 0.998 0.000 1.000
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201590 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201593 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201592 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201617 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201616 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201619 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201618 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201620 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201621 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201623 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201622 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201624 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201625 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201626 3 0.116 0.971 0.028 0.000 0.972
#> SRR1201627 2 0.465 0.740 0.000 0.792 0.208
#> SRR1201628 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201629 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201630 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201631 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201641 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201640 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201643 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201644 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201661 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201662 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201663 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201664 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201665 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201666 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201667 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201668 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201670 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201669 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201673 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201672 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201671 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201677 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201676 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201675 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201674 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201678 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201682 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201683 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201680 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201681 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201679 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201686 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201687 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201688 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201689 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201685 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201692 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201691 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201690 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201696 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201695 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201694 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201693 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201697 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201698 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201700 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201708 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201707 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201706 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201702 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201705 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201701 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201704 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201703 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201716 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201715 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201717 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201712 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201709 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201711 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201714 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201713 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201710 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201719 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201718 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201721 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201720 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201723 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201722 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201725 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201724 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201726 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201727 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201731 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201730 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201734 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201733 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201736 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201737 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201739 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201738 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201742 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201743 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201745 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201744 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201749 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201750 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201752 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201751 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201754 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201753 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201758 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201759 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201760 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201761 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201763 2 0.455 0.753 0.000 0.800 0.200
#> SRR1201762 3 0.000 0.971 0.000 0.000 1.000
#> SRR1201764 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201766 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201768 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201769 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201767 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201770 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201771 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201772 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201773 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201774 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201786 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201784 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201785 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201778 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201779 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201781 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201780 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201783 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201782 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201798 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201797 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201796 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201795 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201799 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201794 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201793 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201792 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201791 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201807 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201808 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201803 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201804 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201805 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201806 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201801 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201802 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201800 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201814 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201816 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201815 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201819 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201820 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201813 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201817 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201818 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201825 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201827 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201828 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201826 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201829 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201830 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201831 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201832 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201833 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201865 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201866 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201867 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201861 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201862 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201863 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201859 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201864 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201860 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201873 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201871 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201872 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201980 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201979 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201982 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201981 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201998 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201996 2 0.000 0.997 0.000 1.000 0.000
#> SRR1201997 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202005 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202006 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202088 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202087 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202093 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202092 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202288 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202289 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202299 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202298 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202303 2 0.465 0.740 0.000 0.792 0.208
#> SRR1202372 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202371 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202563 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202565 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202564 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202649 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202650 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202651 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202843 1 0.000 1.000 1.000 0.000 0.000
#> SRR1202844 1 0.000 1.000 1.000 0.000 0.000
#> SRR1202845 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202847 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202846 2 0.000 0.997 0.000 1.000 0.000
#> SRR1202945 1 0.000 1.000 1.000 0.000 0.000
#> SRR1202949 1 0.000 1.000 1.000 0.000 0.000
#> SRR1202977 1 0.000 1.000 1.000 0.000 0.000
#> SRR1202978 1 0.000 1.000 1.000 0.000 0.000
#> SRR1202979 1 0.000 1.000 1.000 0.000 0.000
#> SRR1202990 1 0.000 1.000 1.000 0.000 0.000
#> SRR1202999 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203005 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203006 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203007 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203009 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203008 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203010 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203011 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203025 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203026 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203027 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203061 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203089 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203125 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203128 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203129 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203130 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203132 2 0.000 0.997 0.000 1.000 0.000
#> SRR1203131 2 0.000 0.997 0.000 1.000 0.000
#> SRR1203133 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203138 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203760 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203761 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203770 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203771 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203772 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203773 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203774 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203775 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203800 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203801 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203802 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203803 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203804 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203805 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203806 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203807 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203808 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203811 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203812 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203813 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203814 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203815 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203816 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203817 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203818 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203819 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203822 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203823 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203824 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203825 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203826 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203827 2 0.175 0.948 0.000 0.952 0.048
#> SRR1203828 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203829 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203830 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203831 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203832 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203833 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203834 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203835 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203836 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203837 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203838 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203839 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203842 2 0.175 0.948 0.000 0.952 0.048
#> SRR1203843 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203845 2 0.000 0.997 0.000 1.000 0.000
#> SRR1203844 2 0.000 0.997 0.000 1.000 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201590 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201593 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201592 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201617 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201616 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201619 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201618 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201620 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201621 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201623 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201622 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201624 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201625 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201626 4 0.000 0.895 0 0.000 0.000 1.000
#> SRR1201627 2 0.393 0.620 0 0.792 0.200 0.008
#> SRR1201628 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201629 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201630 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201631 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201641 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201640 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201643 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201644 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201661 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201662 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201663 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201664 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201665 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201666 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201667 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201668 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201670 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201669 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201673 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201672 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201671 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201677 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201676 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201675 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201674 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201678 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201682 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201683 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201680 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201681 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201679 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201686 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201687 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201688 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201689 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201685 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201692 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201691 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201690 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201696 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201695 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201694 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201693 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201697 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201698 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201700 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201708 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201707 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201706 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201702 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201705 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201701 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201704 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201703 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201716 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201715 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201717 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201712 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201709 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201711 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201714 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201713 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201710 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201719 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201718 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201721 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201720 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201723 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201722 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201725 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201724 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201726 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201727 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201731 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201730 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201734 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201733 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201736 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201737 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201739 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201738 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201742 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201743 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201745 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201744 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201749 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201750 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201752 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201751 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201754 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201753 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201758 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201759 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201760 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201761 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201763 2 0.385 0.639 0 0.800 0.192 0.008
#> SRR1201762 4 0.361 0.895 0 0.000 0.200 0.800
#> SRR1201764 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201766 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201768 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201769 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201767 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201770 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201771 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201772 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201773 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201774 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201786 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201784 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201785 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201778 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201779 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201781 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201780 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201783 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201782 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201798 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201797 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201796 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201795 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201799 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201794 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201793 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201792 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201791 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201807 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201808 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201803 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201804 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201805 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201806 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201801 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201802 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201800 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201814 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201816 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201815 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201819 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201820 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201813 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201817 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201818 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201825 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201827 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201828 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201826 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201829 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201830 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201831 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201832 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201833 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201865 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201866 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201867 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201861 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201862 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201863 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201859 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201864 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201860 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201873 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201871 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201872 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201980 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201979 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201982 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201981 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201998 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201996 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1201997 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202005 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202006 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202088 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202087 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202093 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202092 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202288 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202289 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202299 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202298 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202303 2 0.393 0.620 0 0.792 0.200 0.008
#> SRR1202372 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202371 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202563 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202565 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202564 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202649 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202650 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202651 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202843 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1202844 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1202845 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202847 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202846 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1202945 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1202949 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1202977 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1202978 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1202979 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1202990 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1202999 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203005 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203006 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203007 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203009 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203008 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203010 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203011 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203025 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203026 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203027 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203061 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203089 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203125 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203128 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203129 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203130 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203132 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1203131 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1203133 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203138 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203760 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203761 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203770 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203771 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203772 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203773 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203774 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203775 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203800 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203801 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203802 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203803 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203804 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203805 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203806 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203807 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203808 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203811 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203812 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203813 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203814 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203815 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203816 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203817 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203818 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203819 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203822 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203823 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203824 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203825 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203826 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203827 3 0.454 0.640 0 0.324 0.676 0.000
#> SRR1203828 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203829 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203830 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203831 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203832 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203833 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203834 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203835 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203836 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203837 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203838 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203839 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203842 3 0.361 0.473 0 0.200 0.800 0.000
#> SRR1203843 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203845 2 0.000 0.996 0 1.000 0.000 0.000
#> SRR1203844 2 0.000 0.996 0 1.000 0.000 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201590 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201593 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201592 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201617 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201616 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201619 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201618 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201620 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201621 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201623 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201622 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201624 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201625 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201626 4 0.000 0.683 0 0.000 0.000 1.000 0.000
#> SRR1201627 2 0.339 0.674 0 0.792 0.200 0.008 0.000
#> SRR1201628 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201629 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201630 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201631 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201641 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201640 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201643 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201644 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201661 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201662 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201663 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201664 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201665 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201666 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201667 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201668 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201670 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201669 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201673 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201672 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201671 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201677 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201676 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201675 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201674 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201678 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201682 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201683 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201680 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201681 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201679 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201686 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201687 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201688 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201689 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201685 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201692 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201691 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201690 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201696 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201695 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201694 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201693 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201697 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201698 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201700 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201708 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201707 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201706 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201702 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201705 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201701 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201704 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201703 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201716 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201715 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201717 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201712 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201709 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201711 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201714 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201713 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201710 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201719 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201718 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201721 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201720 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201723 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201722 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201725 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201724 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201726 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201727 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201731 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201730 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201734 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201733 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201736 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201737 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201739 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201738 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201742 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201743 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201745 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201744 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201749 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201750 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201752 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201751 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201754 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201753 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201758 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201759 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201760 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201761 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201763 2 0.332 0.690 0 0.800 0.192 0.008 0.000
#> SRR1201762 4 0.359 0.691 0 0.000 0.264 0.736 0.000
#> SRR1201764 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201766 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201768 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201769 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201767 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201770 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201771 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201772 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201773 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201774 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201786 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201784 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201785 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201778 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201779 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201781 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201780 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201783 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201782 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201798 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201797 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201796 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201795 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201799 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201794 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201793 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201792 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201791 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201807 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201808 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201803 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201804 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201805 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201806 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201801 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201802 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201800 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201814 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201816 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201815 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201819 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201820 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201813 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201817 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201818 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201825 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201827 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201828 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201826 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201829 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201830 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201831 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201832 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201833 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201865 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201866 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201867 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201861 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201862 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201863 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201859 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201864 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201860 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201873 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201871 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201872 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201980 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201979 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201982 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201981 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201998 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201996 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1201997 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202005 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202006 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202088 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202087 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202093 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202092 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202288 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202289 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202299 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202298 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202303 2 0.339 0.674 0 0.792 0.200 0.008 0.000
#> SRR1202372 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202371 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202563 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202565 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202564 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202649 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202650 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202651 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202843 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202845 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202847 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202846 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1202945 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203132 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1203131 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1203133 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203827 3 0.466 0.000 0 0.168 0.736 0.000 0.096
#> SRR1203828 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203842 5 0.000 0.000 0 0.000 0.000 0.000 1.000
#> SRR1203843 1 0.000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203845 2 0.000 0.996 0 1.000 0.000 0.000 0.000
#> SRR1203844 2 0.000 0.996 0 1.000 0.000 0.000 0.000
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201590 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201593 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201592 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201617 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201616 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201619 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201618 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201620 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201621 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201623 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201622 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201624 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201625 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201626 4 0.000 0.000 0 0 0.000 1 0.000 0
#> SRR1201627 3 0.285 0.740 0 0 0.792 0 0.208 0
#> SRR1201628 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201629 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201630 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201631 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201641 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201640 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201643 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201644 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201661 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201662 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201663 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201664 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201665 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201666 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201667 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201668 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201670 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201669 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201673 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201672 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201671 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201677 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201676 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201675 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201674 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201678 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201682 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201683 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201680 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201681 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201679 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201686 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201687 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201688 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201689 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201685 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201692 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201691 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201690 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201696 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201695 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201694 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201693 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201697 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201698 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201700 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201708 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201707 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201706 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201702 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201705 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201701 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201704 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201703 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201716 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201715 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201717 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201712 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201709 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201711 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201714 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201713 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201710 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201719 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201718 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201721 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201720 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201723 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201722 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201725 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201724 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201726 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201727 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201731 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201730 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201734 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201733 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201736 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201737 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201739 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201738 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201742 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201743 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201745 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201744 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201749 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201750 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201752 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201751 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201754 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201753 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201758 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201759 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201760 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201761 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201763 3 0.279 0.752 0 0 0.800 0 0.200 0
#> SRR1201762 5 0.000 0.000 0 0 0.000 0 1.000 0
#> SRR1201764 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201766 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201768 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201769 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201767 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201770 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201771 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201772 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201773 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201774 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201786 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201784 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201785 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201778 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201779 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201781 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201780 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201783 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201782 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201798 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201797 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201796 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201795 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201799 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201794 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201793 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201792 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201791 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201807 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201808 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201803 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201804 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201805 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201806 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201801 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201802 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201800 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201814 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201816 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201815 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201819 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201820 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201813 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201817 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201818 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201825 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201827 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201828 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201826 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201829 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201830 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201831 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201832 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201833 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201865 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201866 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201867 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201861 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201862 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201863 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201859 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201864 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201860 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201873 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201871 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201872 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201980 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201979 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201982 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201981 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201998 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201996 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1201997 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202005 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202006 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202088 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202087 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202093 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202092 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202288 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202289 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202299 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202298 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202303 3 0.285 0.740 0 0 0.792 0 0.208 0
#> SRR1202372 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202371 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202563 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202565 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202564 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202649 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202650 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202651 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202843 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1202844 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1202845 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202847 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202846 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1202945 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1202949 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1202977 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1202978 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1202979 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1202990 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1202999 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203005 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203006 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203007 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203009 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203008 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203010 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203011 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203025 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203026 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203027 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203061 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203089 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203125 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203128 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203129 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203130 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203132 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1203131 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1203133 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203138 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203760 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203761 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203770 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203771 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203772 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203773 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203774 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203775 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203800 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203801 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203802 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203803 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203804 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203805 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203806 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203807 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203808 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203811 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203812 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203813 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203814 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203815 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203816 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203817 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203818 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203819 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203822 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203823 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203824 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203825 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203826 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203827 6 0.000 0.000 0 0 0.000 0 0.000 1
#> SRR1203828 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203829 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203830 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203831 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203832 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203833 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203834 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203835 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203836 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203837 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203838 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203839 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203842 2 0.000 0.000 0 1 0.000 0 0.000 0
#> SRR1203843 1 0.000 1.000 1 0 0.000 0 0.000 0
#> SRR1203845 3 0.000 0.997 0 0 1.000 0 0.000 0
#> SRR1203844 3 0.000 0.997 0 0 1.000 0 0.000 0
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["SD", "kmeans"]
# you can also extract it by
# res = res_list["SD:kmeans"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'SD' method.
#> Subgroups are detected by 'kmeans' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 3.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.3796 0.621 0.621
#> 3 3 1.000 0.990 0.991 0.1038 0.958 0.932
#> 4 4 0.720 0.923 0.880 0.4256 0.753 0.573
#> 5 5 0.594 0.639 0.784 0.1354 0.942 0.834
#> 6 6 0.626 0.631 0.770 0.0783 0.914 0.748
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 3
#> attr(,"optional")
#> [1] 2
There is also optional best \(k\) = 2 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0 1 0 1
#> SRR1201590 2 0 1 0 1
#> SRR1201593 2 0 1 0 1
#> SRR1201592 2 0 1 0 1
#> SRR1201617 2 0 1 0 1
#> SRR1201616 2 0 1 0 1
#> SRR1201619 2 0 1 0 1
#> SRR1201618 2 0 1 0 1
#> SRR1201620 2 0 1 0 1
#> SRR1201621 2 0 1 0 1
#> SRR1201623 2 0 1 0 1
#> SRR1201622 2 0 1 0 1
#> SRR1201624 2 0 1 0 1
#> SRR1201625 2 0 1 0 1
#> SRR1201626 1 0 1 1 0
#> SRR1201627 2 0 1 0 1
#> SRR1201628 2 0 1 0 1
#> SRR1201629 2 0 1 0 1
#> SRR1201630 2 0 1 0 1
#> SRR1201631 2 0 1 0 1
#> SRR1201641 2 0 1 0 1
#> SRR1201640 2 0 1 0 1
#> SRR1201643 2 0 1 0 1
#> SRR1201644 2 0 1 0 1
#> SRR1201661 2 0 1 0 1
#> SRR1201662 2 0 1 0 1
#> SRR1201663 2 0 1 0 1
#> SRR1201664 2 0 1 0 1
#> SRR1201665 2 0 1 0 1
#> SRR1201666 2 0 1 0 1
#> SRR1201667 2 0 1 0 1
#> SRR1201668 2 0 1 0 1
#> SRR1201670 2 0 1 0 1
#> SRR1201669 2 0 1 0 1
#> SRR1201673 2 0 1 0 1
#> SRR1201672 2 0 1 0 1
#> SRR1201671 2 0 1 0 1
#> SRR1201677 2 0 1 0 1
#> SRR1201676 2 0 1 0 1
#> SRR1201675 2 0 1 0 1
#> SRR1201674 2 0 1 0 1
#> SRR1201678 2 0 1 0 1
#> SRR1201682 2 0 1 0 1
#> SRR1201683 2 0 1 0 1
#> SRR1201680 2 0 1 0 1
#> SRR1201681 2 0 1 0 1
#> SRR1201679 2 0 1 0 1
#> SRR1201686 2 0 1 0 1
#> SRR1201687 2 0 1 0 1
#> SRR1201688 2 0 1 0 1
#> SRR1201689 2 0 1 0 1
#> SRR1201685 2 0 1 0 1
#> SRR1201692 2 0 1 0 1
#> SRR1201691 2 0 1 0 1
#> SRR1201690 2 0 1 0 1
#> SRR1201696 2 0 1 0 1
#> SRR1201695 2 0 1 0 1
#> SRR1201694 2 0 1 0 1
#> SRR1201693 2 0 1 0 1
#> SRR1201697 2 0 1 0 1
#> SRR1201698 2 0 1 0 1
#> SRR1201700 2 0 1 0 1
#> SRR1201708 2 0 1 0 1
#> SRR1201707 2 0 1 0 1
#> SRR1201706 2 0 1 0 1
#> SRR1201702 2 0 1 0 1
#> SRR1201705 2 0 1 0 1
#> SRR1201701 2 0 1 0 1
#> SRR1201704 2 0 1 0 1
#> SRR1201703 2 0 1 0 1
#> SRR1201716 2 0 1 0 1
#> SRR1201715 2 0 1 0 1
#> SRR1201717 2 0 1 0 1
#> SRR1201712 2 0 1 0 1
#> SRR1201709 2 0 1 0 1
#> SRR1201711 2 0 1 0 1
#> SRR1201714 2 0 1 0 1
#> SRR1201713 2 0 1 0 1
#> SRR1201710 2 0 1 0 1
#> SRR1201719 2 0 1 0 1
#> SRR1201718 2 0 1 0 1
#> SRR1201721 2 0 1 0 1
#> SRR1201720 2 0 1 0 1
#> SRR1201723 2 0 1 0 1
#> SRR1201722 2 0 1 0 1
#> SRR1201725 2 0 1 0 1
#> SRR1201724 2 0 1 0 1
#> SRR1201726 2 0 1 0 1
#> SRR1201727 2 0 1 0 1
#> SRR1201731 2 0 1 0 1
#> SRR1201730 2 0 1 0 1
#> SRR1201734 2 0 1 0 1
#> SRR1201733 2 0 1 0 1
#> SRR1201736 2 0 1 0 1
#> SRR1201737 2 0 1 0 1
#> SRR1201739 2 0 1 0 1
#> SRR1201738 2 0 1 0 1
#> SRR1201742 2 0 1 0 1
#> SRR1201743 2 0 1 0 1
#> SRR1201745 2 0 1 0 1
#> SRR1201744 2 0 1 0 1
#> SRR1201749 2 0 1 0 1
#> SRR1201750 2 0 1 0 1
#> SRR1201752 2 0 1 0 1
#> SRR1201751 2 0 1 0 1
#> SRR1201754 2 0 1 0 1
#> SRR1201753 2 0 1 0 1
#> SRR1201758 2 0 1 0 1
#> SRR1201759 2 0 1 0 1
#> SRR1201760 2 0 1 0 1
#> SRR1201761 2 0 1 0 1
#> SRR1201763 2 0 1 0 1
#> SRR1201762 2 0 1 0 1
#> SRR1201764 2 0 1 0 1
#> SRR1201766 2 0 1 0 1
#> SRR1201768 2 0 1 0 1
#> SRR1201769 2 0 1 0 1
#> SRR1201767 2 0 1 0 1
#> SRR1201770 2 0 1 0 1
#> SRR1201771 2 0 1 0 1
#> SRR1201772 2 0 1 0 1
#> SRR1201773 2 0 1 0 1
#> SRR1201774 2 0 1 0 1
#> SRR1201786 2 0 1 0 1
#> SRR1201784 2 0 1 0 1
#> SRR1201785 2 0 1 0 1
#> SRR1201778 2 0 1 0 1
#> SRR1201779 2 0 1 0 1
#> SRR1201781 2 0 1 0 1
#> SRR1201780 2 0 1 0 1
#> SRR1201783 2 0 1 0 1
#> SRR1201782 2 0 1 0 1
#> SRR1201798 2 0 1 0 1
#> SRR1201797 2 0 1 0 1
#> SRR1201796 2 0 1 0 1
#> SRR1201795 2 0 1 0 1
#> SRR1201799 2 0 1 0 1
#> SRR1201794 2 0 1 0 1
#> SRR1201793 2 0 1 0 1
#> SRR1201792 2 0 1 0 1
#> SRR1201791 2 0 1 0 1
#> SRR1201807 2 0 1 0 1
#> SRR1201808 2 0 1 0 1
#> SRR1201803 2 0 1 0 1
#> SRR1201804 2 0 1 0 1
#> SRR1201805 2 0 1 0 1
#> SRR1201806 2 0 1 0 1
#> SRR1201801 2 0 1 0 1
#> SRR1201802 2 0 1 0 1
#> SRR1201800 2 0 1 0 1
#> SRR1201814 2 0 1 0 1
#> SRR1201816 2 0 1 0 1
#> SRR1201815 2 0 1 0 1
#> SRR1201819 2 0 1 0 1
#> SRR1201820 2 0 1 0 1
#> SRR1201813 2 0 1 0 1
#> SRR1201817 2 0 1 0 1
#> SRR1201818 2 0 1 0 1
#> SRR1201825 2 0 1 0 1
#> SRR1201827 2 0 1 0 1
#> SRR1201828 2 0 1 0 1
#> SRR1201826 2 0 1 0 1
#> SRR1201829 2 0 1 0 1
#> SRR1201830 2 0 1 0 1
#> SRR1201831 2 0 1 0 1
#> SRR1201832 2 0 1 0 1
#> SRR1201833 2 0 1 0 1
#> SRR1201865 2 0 1 0 1
#> SRR1201866 2 0 1 0 1
#> SRR1201867 2 0 1 0 1
#> SRR1201861 2 0 1 0 1
#> SRR1201862 2 0 1 0 1
#> SRR1201863 2 0 1 0 1
#> SRR1201859 2 0 1 0 1
#> SRR1201864 2 0 1 0 1
#> SRR1201860 2 0 1 0 1
#> SRR1201873 2 0 1 0 1
#> SRR1201871 2 0 1 0 1
#> SRR1201872 2 0 1 0 1
#> SRR1201980 2 0 1 0 1
#> SRR1201979 2 0 1 0 1
#> SRR1201982 2 0 1 0 1
#> SRR1201981 2 0 1 0 1
#> SRR1201998 2 0 1 0 1
#> SRR1201996 2 0 1 0 1
#> SRR1201997 2 0 1 0 1
#> SRR1202005 2 0 1 0 1
#> SRR1202006 2 0 1 0 1
#> SRR1202088 2 0 1 0 1
#> SRR1202087 2 0 1 0 1
#> SRR1202093 2 0 1 0 1
#> SRR1202092 2 0 1 0 1
#> SRR1202288 2 0 1 0 1
#> SRR1202289 2 0 1 0 1
#> SRR1202299 2 0 1 0 1
#> SRR1202298 2 0 1 0 1
#> SRR1202303 2 0 1 0 1
#> SRR1202372 2 0 1 0 1
#> SRR1202371 2 0 1 0 1
#> SRR1202563 2 0 1 0 1
#> SRR1202565 2 0 1 0 1
#> SRR1202564 2 0 1 0 1
#> SRR1202649 2 0 1 0 1
#> SRR1202650 2 0 1 0 1
#> SRR1202651 2 0 1 0 1
#> SRR1202843 1 0 1 1 0
#> SRR1202844 1 0 1 1 0
#> SRR1202845 2 0 1 0 1
#> SRR1202847 2 0 1 0 1
#> SRR1202846 2 0 1 0 1
#> SRR1202945 1 0 1 1 0
#> SRR1202949 1 0 1 1 0
#> SRR1202977 1 0 1 1 0
#> SRR1202978 1 0 1 1 0
#> SRR1202979 1 0 1 1 0
#> SRR1202990 1 0 1 1 0
#> SRR1202999 1 0 1 1 0
#> SRR1203005 1 0 1 1 0
#> SRR1203006 1 0 1 1 0
#> SRR1203007 1 0 1 1 0
#> SRR1203009 1 0 1 1 0
#> SRR1203008 1 0 1 1 0
#> SRR1203010 1 0 1 1 0
#> SRR1203011 1 0 1 1 0
#> SRR1203025 1 0 1 1 0
#> SRR1203026 1 0 1 1 0
#> SRR1203027 1 0 1 1 0
#> SRR1203061 1 0 1 1 0
#> SRR1203089 1 0 1 1 0
#> SRR1203125 1 0 1 1 0
#> SRR1203128 1 0 1 1 0
#> SRR1203129 1 0 1 1 0
#> SRR1203130 1 0 1 1 0
#> SRR1203132 2 0 1 0 1
#> SRR1203131 2 0 1 0 1
#> SRR1203133 1 0 1 1 0
#> SRR1203138 1 0 1 1 0
#> SRR1203760 1 0 1 1 0
#> SRR1203761 1 0 1 1 0
#> SRR1203770 1 0 1 1 0
#> SRR1203771 1 0 1 1 0
#> SRR1203772 1 0 1 1 0
#> SRR1203773 1 0 1 1 0
#> SRR1203774 1 0 1 1 0
#> SRR1203775 1 0 1 1 0
#> SRR1203800 1 0 1 1 0
#> SRR1203801 1 0 1 1 0
#> SRR1203802 1 0 1 1 0
#> SRR1203803 1 0 1 1 0
#> SRR1203804 1 0 1 1 0
#> SRR1203805 1 0 1 1 0
#> SRR1203806 1 0 1 1 0
#> SRR1203807 1 0 1 1 0
#> SRR1203808 1 0 1 1 0
#> SRR1203811 1 0 1 1 0
#> SRR1203812 1 0 1 1 0
#> SRR1203813 1 0 1 1 0
#> SRR1203814 1 0 1 1 0
#> SRR1203815 1 0 1 1 0
#> SRR1203816 1 0 1 1 0
#> SRR1203817 1 0 1 1 0
#> SRR1203818 1 0 1 1 0
#> SRR1203819 1 0 1 1 0
#> SRR1203822 1 0 1 1 0
#> SRR1203823 1 0 1 1 0
#> SRR1203824 1 0 1 1 0
#> SRR1203825 1 0 1 1 0
#> SRR1203826 1 0 1 1 0
#> SRR1203827 2 0 1 0 1
#> SRR1203828 1 0 1 1 0
#> SRR1203829 1 0 1 1 0
#> SRR1203830 1 0 1 1 0
#> SRR1203831 1 0 1 1 0
#> SRR1203832 1 0 1 1 0
#> SRR1203833 1 0 1 1 0
#> SRR1203834 1 0 1 1 0
#> SRR1203835 1 0 1 1 0
#> SRR1203836 1 0 1 1 0
#> SRR1203837 1 0 1 1 0
#> SRR1203838 1 0 1 1 0
#> SRR1203839 1 0 1 1 0
#> SRR1203842 2 0 1 0 1
#> SRR1203843 1 0 1 1 0
#> SRR1203845 2 0 1 0 1
#> SRR1203844 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201590 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201593 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201592 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201617 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201616 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201619 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201618 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201620 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201621 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201623 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201622 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201624 3 0.1860 0.901 0.000 0.052 0.948
#> SRR1201625 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201626 3 0.1163 0.817 0.028 0.000 0.972
#> SRR1201627 3 0.1860 0.901 0.000 0.052 0.948
#> SRR1201628 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201629 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201630 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201631 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201641 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201640 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201643 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201644 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201661 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201662 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201663 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201664 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201665 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201666 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201667 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201668 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201670 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201669 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201673 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201672 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201671 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201677 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201676 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201675 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201674 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201678 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201682 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201683 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201680 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201681 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201679 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201686 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201687 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201688 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201689 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201685 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201692 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201691 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201690 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201696 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201695 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201694 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201693 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201697 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201698 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201700 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201708 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201707 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201706 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201702 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201705 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201701 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201704 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201703 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201716 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201715 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201717 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201712 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201709 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201711 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201714 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201713 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201710 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201719 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201718 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201721 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201720 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201723 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201722 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201725 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201724 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201726 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201727 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201731 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201730 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201734 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201733 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201736 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201737 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201739 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201738 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201742 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201743 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201745 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201744 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201749 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201750 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201752 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201751 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201754 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201753 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201758 3 0.5327 0.681 0.000 0.272 0.728
#> SRR1201759 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201760 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201761 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201763 3 0.5098 0.710 0.000 0.248 0.752
#> SRR1201762 3 0.1860 0.901 0.000 0.052 0.948
#> SRR1201764 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201766 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201768 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201769 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201767 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201770 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201771 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201772 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201773 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201774 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201786 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201784 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201785 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201778 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201779 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201781 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201780 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201783 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201782 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201798 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201797 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201796 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201795 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201799 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201794 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201793 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201792 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201791 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201807 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201808 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201803 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201804 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201805 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201806 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201801 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201802 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201800 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201814 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201816 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201815 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201819 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201820 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201813 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201817 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201818 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201825 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201827 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201828 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201826 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201829 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201830 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201831 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201832 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201833 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201865 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201866 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201867 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201861 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201862 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201863 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201859 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201864 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201860 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201873 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201871 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201872 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201980 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201979 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201982 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201981 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201998 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201996 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201997 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202005 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202006 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202088 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202087 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202093 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202092 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202288 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202289 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202299 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202298 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202303 3 0.1860 0.901 0.000 0.052 0.948
#> SRR1202372 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202371 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202563 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202565 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202564 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202649 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202650 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202651 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202843 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1202844 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1202845 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202847 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202846 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202945 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1202949 1 0.0892 0.979 0.980 0.000 0.020
#> SRR1202977 1 0.0892 0.979 0.980 0.000 0.020
#> SRR1202978 1 0.0747 0.980 0.984 0.000 0.016
#> SRR1202979 1 0.0892 0.979 0.980 0.000 0.020
#> SRR1202990 1 0.0892 0.979 0.980 0.000 0.020
#> SRR1202999 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203005 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203006 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203007 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203009 1 0.1031 0.981 0.976 0.000 0.024
#> SRR1203008 1 0.1031 0.981 0.976 0.000 0.024
#> SRR1203010 1 0.0747 0.980 0.984 0.000 0.016
#> SRR1203011 1 0.0592 0.982 0.988 0.000 0.012
#> SRR1203025 1 0.0747 0.980 0.984 0.000 0.016
#> SRR1203026 1 0.0892 0.981 0.980 0.000 0.020
#> SRR1203027 1 0.0892 0.979 0.980 0.000 0.020
#> SRR1203061 1 0.0892 0.979 0.980 0.000 0.020
#> SRR1203089 1 0.0747 0.980 0.984 0.000 0.016
#> SRR1203125 1 0.0892 0.979 0.980 0.000 0.020
#> SRR1203128 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203129 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203130 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203132 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1203131 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1203133 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203138 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203760 1 0.0747 0.980 0.984 0.000 0.016
#> SRR1203761 1 0.0892 0.979 0.980 0.000 0.020
#> SRR1203770 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203771 1 0.1163 0.980 0.972 0.000 0.028
#> SRR1203772 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203773 1 0.1031 0.981 0.976 0.000 0.024
#> SRR1203774 1 0.0892 0.979 0.980 0.000 0.020
#> SRR1203775 1 0.1031 0.978 0.976 0.000 0.024
#> SRR1203800 1 0.0747 0.980 0.984 0.000 0.016
#> SRR1203801 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203802 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203803 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203804 1 0.0892 0.979 0.980 0.000 0.020
#> SRR1203805 1 0.0892 0.979 0.980 0.000 0.020
#> SRR1203806 1 0.0892 0.982 0.980 0.000 0.020
#> SRR1203807 1 0.0892 0.979 0.980 0.000 0.020
#> SRR1203808 1 0.1289 0.979 0.968 0.000 0.032
#> SRR1203811 1 0.0747 0.980 0.984 0.000 0.016
#> SRR1203812 1 0.0892 0.979 0.980 0.000 0.020
#> SRR1203813 1 0.0592 0.981 0.988 0.000 0.012
#> SRR1203814 1 0.0747 0.982 0.984 0.000 0.016
#> SRR1203815 1 0.0592 0.982 0.988 0.000 0.012
#> SRR1203816 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203817 1 0.0592 0.981 0.988 0.000 0.012
#> SRR1203818 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203819 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203822 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203823 1 0.0892 0.981 0.980 0.000 0.020
#> SRR1203824 1 0.0892 0.982 0.980 0.000 0.020
#> SRR1203825 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203826 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203827 3 0.1860 0.901 0.000 0.052 0.948
#> SRR1203828 1 0.0592 0.981 0.988 0.000 0.012
#> SRR1203829 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203830 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203831 1 0.0747 0.980 0.984 0.000 0.016
#> SRR1203832 1 0.0892 0.979 0.980 0.000 0.020
#> SRR1203833 1 0.0892 0.979 0.980 0.000 0.020
#> SRR1203834 1 0.0747 0.980 0.984 0.000 0.016
#> SRR1203835 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203836 1 0.0892 0.979 0.980 0.000 0.020
#> SRR1203837 1 0.0747 0.982 0.984 0.000 0.016
#> SRR1203838 1 0.0747 0.980 0.984 0.000 0.016
#> SRR1203839 1 0.1163 0.979 0.972 0.000 0.028
#> SRR1203842 3 0.1860 0.901 0.000 0.052 0.948
#> SRR1203843 1 0.0892 0.979 0.980 0.000 0.020
#> SRR1203845 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1203844 2 0.0000 1.000 0.000 1.000 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201590 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201593 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201592 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201617 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201616 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201619 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201618 2 0.1302 0.928 0.000 0.956 0.044 0.000
#> SRR1201620 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201621 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201623 3 0.4477 0.920 0.000 0.312 0.688 0.000
#> SRR1201622 3 0.4304 0.896 0.000 0.284 0.716 0.000
#> SRR1201624 4 0.2469 0.880 0.000 0.000 0.108 0.892
#> SRR1201625 3 0.3649 0.787 0.000 0.204 0.796 0.000
#> SRR1201626 4 0.1211 0.890 0.000 0.000 0.040 0.960
#> SRR1201627 4 0.1022 0.894 0.000 0.000 0.032 0.968
#> SRR1201628 3 0.4624 0.926 0.000 0.340 0.660 0.000
#> SRR1201629 3 0.4713 0.920 0.000 0.360 0.640 0.000
#> SRR1201630 2 0.1474 0.920 0.000 0.948 0.052 0.000
#> SRR1201631 2 0.1118 0.939 0.000 0.964 0.036 0.000
#> SRR1201641 2 0.0469 0.961 0.000 0.988 0.012 0.000
#> SRR1201640 2 0.1118 0.939 0.000 0.964 0.036 0.000
#> SRR1201643 3 0.4746 0.914 0.000 0.368 0.632 0.000
#> SRR1201644 3 0.4933 0.822 0.000 0.432 0.568 0.000
#> SRR1201661 2 0.1474 0.920 0.000 0.948 0.052 0.000
#> SRR1201662 2 0.1389 0.925 0.000 0.952 0.048 0.000
#> SRR1201663 3 0.3764 0.809 0.000 0.216 0.784 0.000
#> SRR1201664 3 0.3907 0.834 0.000 0.232 0.768 0.000
#> SRR1201665 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201666 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201667 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201668 3 0.3764 0.809 0.000 0.216 0.784 0.000
#> SRR1201670 3 0.3942 0.840 0.000 0.236 0.764 0.000
#> SRR1201669 3 0.3942 0.840 0.000 0.236 0.764 0.000
#> SRR1201673 2 0.1022 0.942 0.000 0.968 0.032 0.000
#> SRR1201672 2 0.1022 0.942 0.000 0.968 0.032 0.000
#> SRR1201671 2 0.4697 -0.155 0.000 0.644 0.356 0.000
#> SRR1201677 2 0.1022 0.942 0.000 0.968 0.032 0.000
#> SRR1201676 2 0.1022 0.942 0.000 0.968 0.032 0.000
#> SRR1201675 2 0.1022 0.942 0.000 0.968 0.032 0.000
#> SRR1201674 2 0.1022 0.942 0.000 0.968 0.032 0.000
#> SRR1201678 2 0.1022 0.942 0.000 0.968 0.032 0.000
#> SRR1201682 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201683 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201680 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201681 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201679 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201686 3 0.3873 0.829 0.000 0.228 0.772 0.000
#> SRR1201687 3 0.3873 0.829 0.000 0.228 0.772 0.000
#> SRR1201688 3 0.3873 0.829 0.000 0.228 0.772 0.000
#> SRR1201689 3 0.3873 0.829 0.000 0.228 0.772 0.000
#> SRR1201685 3 0.3649 0.787 0.000 0.204 0.796 0.000
#> SRR1201692 3 0.4843 0.884 0.000 0.396 0.604 0.000
#> SRR1201691 3 0.4843 0.884 0.000 0.396 0.604 0.000
#> SRR1201690 3 0.4661 0.925 0.000 0.348 0.652 0.000
#> SRR1201696 3 0.4843 0.884 0.000 0.396 0.604 0.000
#> SRR1201695 3 0.4843 0.884 0.000 0.396 0.604 0.000
#> SRR1201694 3 0.4843 0.884 0.000 0.396 0.604 0.000
#> SRR1201693 3 0.4843 0.884 0.000 0.396 0.604 0.000
#> SRR1201697 3 0.4843 0.884 0.000 0.396 0.604 0.000
#> SRR1201698 3 0.4843 0.884 0.000 0.396 0.604 0.000
#> SRR1201700 3 0.4643 0.925 0.000 0.344 0.656 0.000
#> SRR1201708 3 0.4713 0.920 0.000 0.360 0.640 0.000
#> SRR1201707 3 0.4713 0.920 0.000 0.360 0.640 0.000
#> SRR1201706 3 0.4713 0.920 0.000 0.360 0.640 0.000
#> SRR1201702 3 0.4713 0.920 0.000 0.360 0.640 0.000
#> SRR1201705 3 0.4713 0.920 0.000 0.360 0.640 0.000
#> SRR1201701 3 0.4713 0.920 0.000 0.360 0.640 0.000
#> SRR1201704 3 0.4713 0.920 0.000 0.360 0.640 0.000
#> SRR1201703 3 0.4713 0.920 0.000 0.360 0.640 0.000
#> SRR1201716 3 0.4477 0.920 0.000 0.312 0.688 0.000
#> SRR1201715 3 0.4477 0.920 0.000 0.312 0.688 0.000
#> SRR1201717 3 0.4477 0.920 0.000 0.312 0.688 0.000
#> SRR1201712 3 0.4477 0.920 0.000 0.312 0.688 0.000
#> SRR1201709 3 0.4382 0.907 0.000 0.296 0.704 0.000
#> SRR1201711 3 0.4477 0.920 0.000 0.312 0.688 0.000
#> SRR1201714 3 0.4477 0.920 0.000 0.312 0.688 0.000
#> SRR1201713 3 0.4477 0.920 0.000 0.312 0.688 0.000
#> SRR1201710 3 0.4477 0.920 0.000 0.312 0.688 0.000
#> SRR1201719 2 0.0921 0.947 0.000 0.972 0.028 0.000
#> SRR1201718 2 0.1389 0.925 0.000 0.952 0.048 0.000
#> SRR1201721 3 0.4713 0.920 0.000 0.360 0.640 0.000
#> SRR1201720 3 0.4679 0.923 0.000 0.352 0.648 0.000
#> SRR1201723 3 0.3942 0.840 0.000 0.236 0.764 0.000
#> SRR1201722 3 0.3907 0.834 0.000 0.232 0.768 0.000
#> SRR1201725 2 0.1474 0.920 0.000 0.948 0.052 0.000
#> SRR1201724 2 0.1716 0.903 0.000 0.936 0.064 0.000
#> SRR1201726 3 0.4382 0.907 0.000 0.296 0.704 0.000
#> SRR1201727 3 0.4543 0.923 0.000 0.324 0.676 0.000
#> SRR1201731 3 0.4843 0.884 0.000 0.396 0.604 0.000
#> SRR1201730 3 0.4746 0.914 0.000 0.368 0.632 0.000
#> SRR1201734 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201733 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201736 2 0.0817 0.951 0.000 0.976 0.024 0.000
#> SRR1201737 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201739 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201738 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201742 2 0.0707 0.954 0.000 0.980 0.020 0.000
#> SRR1201743 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201745 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201744 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201749 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201750 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201752 3 0.4855 0.878 0.000 0.400 0.600 0.000
#> SRR1201751 3 0.4713 0.920 0.000 0.360 0.640 0.000
#> SRR1201754 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201753 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201758 4 0.5691 0.586 0.000 0.028 0.408 0.564
#> SRR1201759 3 0.3649 0.787 0.000 0.204 0.796 0.000
#> SRR1201760 3 0.4661 0.925 0.000 0.348 0.652 0.000
#> SRR1201761 3 0.4713 0.920 0.000 0.360 0.640 0.000
#> SRR1201763 4 0.5742 0.605 0.000 0.036 0.368 0.596
#> SRR1201762 4 0.0469 0.894 0.000 0.000 0.012 0.988
#> SRR1201764 3 0.4624 0.926 0.000 0.340 0.660 0.000
#> SRR1201766 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201768 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201769 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201767 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201770 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201771 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201772 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201773 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201774 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201786 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201784 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201785 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201778 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201779 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201781 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201780 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201783 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201782 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201798 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201797 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201796 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201795 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201799 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201794 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201793 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201792 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201791 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201807 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201808 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201803 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201804 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201805 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201806 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201801 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201802 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201800 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201814 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201816 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201815 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201819 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201820 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201813 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201817 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201818 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1201825 3 0.4277 0.892 0.000 0.280 0.720 0.000
#> SRR1201827 2 0.1867 0.895 0.000 0.928 0.072 0.000
#> SRR1201828 2 0.1867 0.895 0.000 0.928 0.072 0.000
#> SRR1201826 3 0.4830 0.889 0.000 0.392 0.608 0.000
#> SRR1201829 2 0.1867 0.895 0.000 0.928 0.072 0.000
#> SRR1201830 2 0.1867 0.895 0.000 0.928 0.072 0.000
#> SRR1201831 2 0.1867 0.895 0.000 0.928 0.072 0.000
#> SRR1201832 2 0.1867 0.895 0.000 0.928 0.072 0.000
#> SRR1201833 2 0.1867 0.895 0.000 0.928 0.072 0.000
#> SRR1201865 3 0.4624 0.926 0.000 0.340 0.660 0.000
#> SRR1201866 3 0.4624 0.926 0.000 0.340 0.660 0.000
#> SRR1201867 3 0.4624 0.926 0.000 0.340 0.660 0.000
#> SRR1201861 3 0.4624 0.926 0.000 0.340 0.660 0.000
#> SRR1201862 3 0.4624 0.926 0.000 0.340 0.660 0.000
#> SRR1201863 3 0.4624 0.926 0.000 0.340 0.660 0.000
#> SRR1201859 3 0.4382 0.907 0.000 0.296 0.704 0.000
#> SRR1201864 3 0.4624 0.926 0.000 0.340 0.660 0.000
#> SRR1201860 3 0.4624 0.926 0.000 0.340 0.660 0.000
#> SRR1201873 3 0.4477 0.920 0.000 0.312 0.688 0.000
#> SRR1201871 3 0.4356 0.904 0.000 0.292 0.708 0.000
#> SRR1201872 3 0.4477 0.920 0.000 0.312 0.688 0.000
#> SRR1201980 3 0.4843 0.884 0.000 0.396 0.604 0.000
#> SRR1201979 3 0.4713 0.920 0.000 0.360 0.640 0.000
#> SRR1201982 2 0.4730 -0.140 0.000 0.636 0.364 0.000
#> SRR1201981 3 0.4746 0.914 0.000 0.368 0.632 0.000
#> SRR1201998 2 0.1637 0.909 0.000 0.940 0.060 0.000
#> SRR1201996 2 0.2081 0.870 0.000 0.916 0.084 0.000
#> SRR1201997 2 0.1474 0.920 0.000 0.948 0.052 0.000
#> SRR1202005 2 0.1022 0.943 0.000 0.968 0.032 0.000
#> SRR1202006 2 0.0188 0.968 0.000 0.996 0.004 0.000
#> SRR1202088 3 0.4941 0.822 0.000 0.436 0.564 0.000
#> SRR1202087 3 0.4679 0.918 0.000 0.352 0.648 0.000
#> SRR1202093 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1202092 2 0.0188 0.968 0.000 0.996 0.004 0.000
#> SRR1202288 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1202289 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1202299 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1202298 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1202303 4 0.1022 0.894 0.000 0.000 0.032 0.968
#> SRR1202372 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1202371 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1202563 2 0.0188 0.968 0.000 0.996 0.004 0.000
#> SRR1202565 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1202564 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1202649 3 0.5000 0.681 0.000 0.496 0.504 0.000
#> SRR1202650 2 0.0188 0.968 0.000 0.996 0.004 0.000
#> SRR1202651 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1202843 1 0.2281 0.940 0.904 0.000 0.096 0.000
#> SRR1202844 1 0.2281 0.940 0.904 0.000 0.096 0.000
#> SRR1202845 2 0.1792 0.897 0.000 0.932 0.068 0.000
#> SRR1202847 2 0.1474 0.920 0.000 0.948 0.052 0.000
#> SRR1202846 2 0.1474 0.920 0.000 0.948 0.052 0.000
#> SRR1202945 1 0.2281 0.940 0.904 0.000 0.096 0.000
#> SRR1202949 1 0.1211 0.941 0.960 0.000 0.040 0.000
#> SRR1202977 1 0.1302 0.939 0.956 0.000 0.044 0.000
#> SRR1202978 1 0.0707 0.945 0.980 0.000 0.020 0.000
#> SRR1202979 1 0.0592 0.946 0.984 0.000 0.016 0.000
#> SRR1202990 1 0.1302 0.939 0.956 0.000 0.044 0.000
#> SRR1202999 1 0.2469 0.939 0.892 0.000 0.108 0.000
#> SRR1203005 1 0.2408 0.939 0.896 0.000 0.104 0.000
#> SRR1203006 1 0.2281 0.940 0.904 0.000 0.096 0.000
#> SRR1203007 1 0.2281 0.940 0.904 0.000 0.096 0.000
#> SRR1203009 1 0.1557 0.944 0.944 0.000 0.056 0.000
#> SRR1203008 1 0.1557 0.944 0.944 0.000 0.056 0.000
#> SRR1203010 1 0.1022 0.943 0.968 0.000 0.032 0.000
#> SRR1203011 1 0.1302 0.945 0.956 0.000 0.044 0.000
#> SRR1203025 1 0.1118 0.943 0.964 0.000 0.036 0.000
#> SRR1203026 1 0.1302 0.945 0.956 0.000 0.044 0.000
#> SRR1203027 1 0.1211 0.941 0.960 0.000 0.040 0.000
#> SRR1203061 1 0.1022 0.942 0.968 0.000 0.032 0.000
#> SRR1203089 1 0.0707 0.945 0.980 0.000 0.020 0.000
#> SRR1203125 1 0.1022 0.942 0.968 0.000 0.032 0.000
#> SRR1203128 1 0.2281 0.940 0.904 0.000 0.096 0.000
#> SRR1203129 1 0.2281 0.940 0.904 0.000 0.096 0.000
#> SRR1203130 1 0.2281 0.940 0.904 0.000 0.096 0.000
#> SRR1203132 3 0.4843 0.884 0.000 0.396 0.604 0.000
#> SRR1203131 3 0.4661 0.925 0.000 0.348 0.652 0.000
#> SRR1203133 1 0.2281 0.940 0.904 0.000 0.096 0.000
#> SRR1203138 1 0.2408 0.939 0.896 0.000 0.104 0.000
#> SRR1203760 1 0.0921 0.946 0.972 0.000 0.028 0.000
#> SRR1203761 1 0.0921 0.943 0.972 0.000 0.028 0.000
#> SRR1203770 1 0.2281 0.940 0.904 0.000 0.096 0.000
#> SRR1203771 1 0.1867 0.946 0.928 0.000 0.072 0.000
#> SRR1203772 1 0.2469 0.939 0.892 0.000 0.108 0.000
#> SRR1203773 1 0.2011 0.945 0.920 0.000 0.080 0.000
#> SRR1203774 1 0.0921 0.943 0.972 0.000 0.028 0.000
#> SRR1203775 1 0.1211 0.940 0.960 0.000 0.040 0.000
#> SRR1203800 1 0.1118 0.947 0.964 0.000 0.036 0.000
#> SRR1203801 1 0.2530 0.939 0.888 0.000 0.112 0.000
#> SRR1203802 1 0.2281 0.940 0.904 0.000 0.096 0.000
#> SRR1203803 1 0.2281 0.940 0.904 0.000 0.096 0.000
#> SRR1203804 1 0.1118 0.941 0.964 0.000 0.036 0.000
#> SRR1203805 1 0.1211 0.941 0.960 0.000 0.040 0.000
#> SRR1203806 1 0.2216 0.943 0.908 0.000 0.092 0.000
#> SRR1203807 1 0.1022 0.942 0.968 0.000 0.032 0.000
#> SRR1203808 1 0.2530 0.939 0.888 0.000 0.112 0.000
#> SRR1203811 1 0.0817 0.946 0.976 0.000 0.024 0.000
#> SRR1203812 1 0.1302 0.939 0.956 0.000 0.044 0.000
#> SRR1203813 1 0.1118 0.943 0.964 0.000 0.036 0.000
#> SRR1203814 1 0.1118 0.950 0.964 0.000 0.036 0.000
#> SRR1203815 1 0.0707 0.949 0.980 0.000 0.020 0.000
#> SRR1203816 1 0.2408 0.939 0.896 0.000 0.104 0.000
#> SRR1203817 1 0.0336 0.949 0.992 0.000 0.008 0.000
#> SRR1203818 1 0.2469 0.939 0.892 0.000 0.108 0.000
#> SRR1203819 1 0.2469 0.939 0.892 0.000 0.108 0.000
#> SRR1203822 1 0.2281 0.940 0.904 0.000 0.096 0.000
#> SRR1203823 1 0.1118 0.950 0.964 0.000 0.036 0.000
#> SRR1203824 1 0.1474 0.950 0.948 0.000 0.052 0.000
#> SRR1203825 1 0.2345 0.940 0.900 0.000 0.100 0.000
#> SRR1203826 1 0.2469 0.939 0.892 0.000 0.108 0.000
#> SRR1203827 4 0.0592 0.895 0.000 0.000 0.016 0.984
#> SRR1203828 1 0.1118 0.943 0.964 0.000 0.036 0.000
#> SRR1203829 1 0.2408 0.939 0.896 0.000 0.104 0.000
#> SRR1203830 1 0.2281 0.940 0.904 0.000 0.096 0.000
#> SRR1203831 1 0.1302 0.940 0.956 0.000 0.044 0.000
#> SRR1203832 1 0.1211 0.940 0.960 0.000 0.040 0.000
#> SRR1203833 1 0.0921 0.943 0.972 0.000 0.028 0.000
#> SRR1203834 1 0.0707 0.945 0.980 0.000 0.020 0.000
#> SRR1203835 1 0.2281 0.940 0.904 0.000 0.096 0.000
#> SRR1203836 1 0.1211 0.939 0.960 0.000 0.040 0.000
#> SRR1203837 1 0.1211 0.951 0.960 0.000 0.040 0.000
#> SRR1203838 1 0.0707 0.945 0.980 0.000 0.020 0.000
#> SRR1203839 1 0.2345 0.940 0.900 0.000 0.100 0.000
#> SRR1203842 4 0.0592 0.895 0.000 0.000 0.016 0.984
#> SRR1203843 1 0.0921 0.946 0.972 0.000 0.028 0.000
#> SRR1203845 2 0.0000 0.971 0.000 1.000 0.000 0.000
#> SRR1203844 2 0.0336 0.965 0.000 0.992 0.008 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201590 2 0.1386 0.81073 0.000 0.952 0.016 0.000 0.032
#> SRR1201593 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201592 2 0.1485 0.80850 0.000 0.948 0.020 0.000 0.032
#> SRR1201617 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201616 2 0.1485 0.80850 0.000 0.948 0.020 0.000 0.032
#> SRR1201619 2 0.0566 0.82224 0.000 0.984 0.012 0.000 0.004
#> SRR1201618 2 0.4434 0.60508 0.000 0.736 0.208 0.000 0.056
#> SRR1201620 2 0.1800 0.79993 0.000 0.932 0.020 0.000 0.048
#> SRR1201621 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201623 3 0.6085 0.21743 0.000 0.164 0.556 0.000 0.280
#> SRR1201622 3 0.5868 0.06147 0.000 0.132 0.576 0.000 0.292
#> SRR1201624 4 0.5018 0.76730 0.000 0.000 0.068 0.664 0.268
#> SRR1201625 5 0.5483 0.85634 0.000 0.064 0.424 0.000 0.512
#> SRR1201626 4 0.2208 0.85919 0.000 0.000 0.020 0.908 0.072
#> SRR1201627 4 0.2491 0.87044 0.000 0.000 0.036 0.896 0.068
#> SRR1201628 3 0.2930 0.62374 0.000 0.164 0.832 0.000 0.004
#> SRR1201629 3 0.3003 0.63970 0.000 0.188 0.812 0.000 0.000
#> SRR1201630 3 0.5352 0.01506 0.000 0.468 0.480 0.000 0.052
#> SRR1201631 2 0.4627 0.13393 0.000 0.544 0.444 0.000 0.012
#> SRR1201641 2 0.4473 0.24436 0.000 0.580 0.412 0.000 0.008
#> SRR1201640 2 0.4747 -0.02560 0.000 0.500 0.484 0.000 0.016
#> SRR1201643 3 0.3829 0.63379 0.000 0.196 0.776 0.000 0.028
#> SRR1201644 3 0.3807 0.62585 0.000 0.240 0.748 0.000 0.012
#> SRR1201661 2 0.4824 0.08475 0.000 0.512 0.468 0.000 0.020
#> SRR1201662 2 0.4436 0.28382 0.000 0.596 0.396 0.000 0.008
#> SRR1201663 5 0.5604 0.87171 0.000 0.072 0.456 0.000 0.472
#> SRR1201664 3 0.5677 -0.74605 0.000 0.080 0.496 0.000 0.424
#> SRR1201665 2 0.2144 0.78772 0.000 0.912 0.020 0.000 0.068
#> SRR1201666 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201667 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201668 5 0.5604 0.87171 0.000 0.072 0.456 0.000 0.472
#> SRR1201670 3 0.5803 -0.70365 0.000 0.092 0.488 0.000 0.420
#> SRR1201669 3 0.5803 -0.70365 0.000 0.092 0.488 0.000 0.420
#> SRR1201673 2 0.4084 0.43251 0.000 0.668 0.328 0.000 0.004
#> SRR1201672 2 0.4084 0.43251 0.000 0.668 0.328 0.000 0.004
#> SRR1201671 3 0.4547 0.41634 0.000 0.400 0.588 0.000 0.012
#> SRR1201677 2 0.4084 0.43251 0.000 0.668 0.328 0.000 0.004
#> SRR1201676 2 0.4084 0.43251 0.000 0.668 0.328 0.000 0.004
#> SRR1201675 2 0.4084 0.43251 0.000 0.668 0.328 0.000 0.004
#> SRR1201674 2 0.4084 0.43251 0.000 0.668 0.328 0.000 0.004
#> SRR1201678 2 0.4084 0.43251 0.000 0.668 0.328 0.000 0.004
#> SRR1201682 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201683 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201680 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201681 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201679 2 0.1117 0.81806 0.000 0.964 0.016 0.000 0.020
#> SRR1201686 5 0.5649 0.86888 0.000 0.076 0.452 0.000 0.472
#> SRR1201687 5 0.5649 0.86888 0.000 0.076 0.452 0.000 0.472
#> SRR1201688 5 0.5649 0.86888 0.000 0.076 0.452 0.000 0.472
#> SRR1201689 5 0.5649 0.86888 0.000 0.076 0.452 0.000 0.472
#> SRR1201685 5 0.5467 0.84620 0.000 0.064 0.412 0.000 0.524
#> SRR1201692 3 0.3336 0.63857 0.000 0.228 0.772 0.000 0.000
#> SRR1201691 3 0.3336 0.63857 0.000 0.228 0.772 0.000 0.000
#> SRR1201690 3 0.3010 0.63144 0.000 0.172 0.824 0.000 0.004
#> SRR1201696 3 0.3336 0.63857 0.000 0.228 0.772 0.000 0.000
#> SRR1201695 3 0.3336 0.63857 0.000 0.228 0.772 0.000 0.000
#> SRR1201694 3 0.3336 0.63857 0.000 0.228 0.772 0.000 0.000
#> SRR1201693 3 0.3336 0.63857 0.000 0.228 0.772 0.000 0.000
#> SRR1201697 3 0.3336 0.63857 0.000 0.228 0.772 0.000 0.000
#> SRR1201698 3 0.3336 0.63857 0.000 0.228 0.772 0.000 0.000
#> SRR1201700 3 0.2813 0.62872 0.000 0.168 0.832 0.000 0.000
#> SRR1201708 3 0.3003 0.63970 0.000 0.188 0.812 0.000 0.000
#> SRR1201707 3 0.3003 0.63970 0.000 0.188 0.812 0.000 0.000
#> SRR1201706 3 0.3003 0.63970 0.000 0.188 0.812 0.000 0.000
#> SRR1201702 3 0.3003 0.63970 0.000 0.188 0.812 0.000 0.000
#> SRR1201705 3 0.3003 0.63970 0.000 0.188 0.812 0.000 0.000
#> SRR1201701 3 0.3003 0.63970 0.000 0.188 0.812 0.000 0.000
#> SRR1201704 3 0.3003 0.63970 0.000 0.188 0.812 0.000 0.000
#> SRR1201703 3 0.3003 0.63970 0.000 0.188 0.812 0.000 0.000
#> SRR1201716 3 0.6040 0.17381 0.000 0.156 0.560 0.000 0.284
#> SRR1201715 3 0.6040 0.17381 0.000 0.156 0.560 0.000 0.284
#> SRR1201717 3 0.6040 0.17381 0.000 0.156 0.560 0.000 0.284
#> SRR1201712 3 0.6040 0.17381 0.000 0.156 0.560 0.000 0.284
#> SRR1201709 3 0.5851 0.06290 0.000 0.132 0.580 0.000 0.288
#> SRR1201711 3 0.6040 0.17381 0.000 0.156 0.560 0.000 0.284
#> SRR1201714 3 0.6040 0.17381 0.000 0.156 0.560 0.000 0.284
#> SRR1201713 3 0.6040 0.17381 0.000 0.156 0.560 0.000 0.284
#> SRR1201710 3 0.6040 0.17381 0.000 0.156 0.560 0.000 0.284
#> SRR1201719 2 0.4415 0.30976 0.000 0.604 0.388 0.000 0.008
#> SRR1201718 2 0.4723 0.11840 0.000 0.536 0.448 0.000 0.016
#> SRR1201721 3 0.3266 0.64007 0.000 0.200 0.796 0.000 0.004
#> SRR1201720 3 0.3048 0.63425 0.000 0.176 0.820 0.000 0.004
#> SRR1201723 3 0.5666 -0.19529 0.000 0.108 0.592 0.000 0.300
#> SRR1201722 3 0.5631 -0.75951 0.000 0.076 0.500 0.000 0.424
#> SRR1201725 2 0.4528 0.13640 0.000 0.548 0.444 0.000 0.008
#> SRR1201724 2 0.4829 -0.02137 0.000 0.500 0.480 0.000 0.020
#> SRR1201726 3 0.5618 0.23248 0.000 0.136 0.628 0.000 0.236
#> SRR1201727 3 0.2890 0.61296 0.000 0.160 0.836 0.000 0.004
#> SRR1201731 3 0.3491 0.63716 0.000 0.228 0.768 0.000 0.004
#> SRR1201730 3 0.3496 0.63697 0.000 0.200 0.788 0.000 0.012
#> SRR1201734 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201733 2 0.2079 0.79038 0.000 0.916 0.020 0.000 0.064
#> SRR1201736 2 0.2569 0.77699 0.000 0.892 0.040 0.000 0.068
#> SRR1201737 2 0.0290 0.82587 0.000 0.992 0.000 0.000 0.008
#> SRR1201739 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201738 2 0.1725 0.80277 0.000 0.936 0.020 0.000 0.044
#> SRR1201742 2 0.5029 0.48012 0.000 0.648 0.292 0.000 0.060
#> SRR1201743 2 0.1124 0.80855 0.000 0.960 0.036 0.000 0.004
#> SRR1201745 2 0.1082 0.81600 0.000 0.964 0.008 0.000 0.028
#> SRR1201744 2 0.2144 0.78772 0.000 0.912 0.020 0.000 0.068
#> SRR1201749 2 0.2144 0.78772 0.000 0.912 0.020 0.000 0.068
#> SRR1201750 2 0.0404 0.82530 0.000 0.988 0.000 0.000 0.012
#> SRR1201752 3 0.3366 0.63739 0.000 0.232 0.768 0.000 0.000
#> SRR1201751 3 0.3246 0.63810 0.000 0.184 0.808 0.000 0.008
#> SRR1201754 2 0.0000 0.82586 0.000 1.000 0.000 0.000 0.000
#> SRR1201753 2 0.3238 0.72807 0.000 0.836 0.136 0.000 0.028
#> SRR1201758 5 0.6974 -0.14367 0.000 0.016 0.208 0.344 0.432
#> SRR1201759 5 0.5483 0.85634 0.000 0.064 0.424 0.000 0.512
#> SRR1201760 3 0.3010 0.63144 0.000 0.172 0.824 0.000 0.004
#> SRR1201761 3 0.3003 0.63970 0.000 0.188 0.812 0.000 0.000
#> SRR1201763 4 0.6630 0.39162 0.000 0.012 0.156 0.464 0.368
#> SRR1201762 4 0.0290 0.87078 0.000 0.000 0.000 0.992 0.008
#> SRR1201764 3 0.4078 0.58877 0.000 0.148 0.784 0.000 0.068
#> SRR1201766 2 0.1386 0.81265 0.000 0.952 0.016 0.000 0.032
#> SRR1201768 2 0.0880 0.82040 0.000 0.968 0.000 0.000 0.032
#> SRR1201769 2 0.0880 0.82040 0.000 0.968 0.000 0.000 0.032
#> SRR1201767 2 0.0880 0.82040 0.000 0.968 0.000 0.000 0.032
#> SRR1201770 2 0.0880 0.82040 0.000 0.968 0.000 0.000 0.032
#> SRR1201771 2 0.0880 0.82040 0.000 0.968 0.000 0.000 0.032
#> SRR1201772 2 0.0880 0.82040 0.000 0.968 0.000 0.000 0.032
#> SRR1201773 2 0.0880 0.82040 0.000 0.968 0.000 0.000 0.032
#> SRR1201774 2 0.0880 0.82040 0.000 0.968 0.000 0.000 0.032
#> SRR1201786 2 0.0880 0.82040 0.000 0.968 0.000 0.000 0.032
#> SRR1201784 2 0.0880 0.82040 0.000 0.968 0.000 0.000 0.032
#> SRR1201785 2 0.0880 0.82040 0.000 0.968 0.000 0.000 0.032
#> SRR1201778 2 0.1800 0.80130 0.000 0.932 0.020 0.000 0.048
#> SRR1201779 2 0.0880 0.82040 0.000 0.968 0.000 0.000 0.032
#> SRR1201781 2 0.0880 0.82040 0.000 0.968 0.000 0.000 0.032
#> SRR1201780 2 0.0880 0.82040 0.000 0.968 0.000 0.000 0.032
#> SRR1201783 2 0.0880 0.82040 0.000 0.968 0.000 0.000 0.032
#> SRR1201782 2 0.0880 0.82040 0.000 0.968 0.000 0.000 0.032
#> SRR1201798 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201797 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201796 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201795 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201799 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201794 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201793 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201792 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1201791 2 0.0898 0.82042 0.000 0.972 0.008 0.000 0.020
#> SRR1201807 2 0.0000 0.82586 0.000 1.000 0.000 0.000 0.000
#> SRR1201808 2 0.0000 0.82586 0.000 1.000 0.000 0.000 0.000
#> SRR1201803 2 0.0000 0.82586 0.000 1.000 0.000 0.000 0.000
#> SRR1201804 2 0.0000 0.82586 0.000 1.000 0.000 0.000 0.000
#> SRR1201805 2 0.0000 0.82586 0.000 1.000 0.000 0.000 0.000
#> SRR1201806 2 0.0000 0.82586 0.000 1.000 0.000 0.000 0.000
#> SRR1201801 2 0.0000 0.82586 0.000 1.000 0.000 0.000 0.000
#> SRR1201802 2 0.0000 0.82586 0.000 1.000 0.000 0.000 0.000
#> SRR1201800 2 0.0798 0.82211 0.000 0.976 0.008 0.000 0.016
#> SRR1201814 2 0.0162 0.82538 0.000 0.996 0.000 0.000 0.004
#> SRR1201816 2 0.0162 0.82538 0.000 0.996 0.000 0.000 0.004
#> SRR1201815 2 0.0162 0.82538 0.000 0.996 0.000 0.000 0.004
#> SRR1201819 2 0.0162 0.82538 0.000 0.996 0.000 0.000 0.004
#> SRR1201820 2 0.0162 0.82538 0.000 0.996 0.000 0.000 0.004
#> SRR1201813 2 0.0162 0.82538 0.000 0.996 0.000 0.000 0.004
#> SRR1201817 2 0.0162 0.82538 0.000 0.996 0.000 0.000 0.004
#> SRR1201818 2 0.0162 0.82538 0.000 0.996 0.000 0.000 0.004
#> SRR1201825 3 0.5843 0.00131 0.000 0.124 0.572 0.000 0.304
#> SRR1201827 3 0.4307 0.07536 0.000 0.500 0.500 0.000 0.000
#> SRR1201828 3 0.4307 0.07536 0.000 0.500 0.500 0.000 0.000
#> SRR1201826 3 0.4367 0.60227 0.000 0.192 0.748 0.000 0.060
#> SRR1201829 2 0.4307 -0.09478 0.000 0.500 0.500 0.000 0.000
#> SRR1201830 2 0.4307 -0.09478 0.000 0.500 0.500 0.000 0.000
#> SRR1201831 2 0.4307 -0.09478 0.000 0.500 0.500 0.000 0.000
#> SRR1201832 2 0.4307 -0.09478 0.000 0.500 0.500 0.000 0.000
#> SRR1201833 3 0.4307 0.07536 0.000 0.500 0.500 0.000 0.000
#> SRR1201865 3 0.6160 0.27052 0.000 0.172 0.544 0.000 0.284
#> SRR1201866 3 0.6160 0.27052 0.000 0.172 0.544 0.000 0.284
#> SRR1201867 3 0.6160 0.27052 0.000 0.172 0.544 0.000 0.284
#> SRR1201861 3 0.6160 0.27052 0.000 0.172 0.544 0.000 0.284
#> SRR1201862 3 0.6160 0.27052 0.000 0.172 0.544 0.000 0.284
#> SRR1201863 3 0.6160 0.27052 0.000 0.172 0.544 0.000 0.284
#> SRR1201859 3 0.5947 0.05525 0.000 0.132 0.556 0.000 0.312
#> SRR1201864 3 0.6160 0.27052 0.000 0.172 0.544 0.000 0.284
#> SRR1201860 3 0.6160 0.27052 0.000 0.172 0.544 0.000 0.284
#> SRR1201873 3 0.6040 0.17381 0.000 0.156 0.560 0.000 0.284
#> SRR1201871 3 0.5831 0.03459 0.000 0.128 0.580 0.000 0.292
#> SRR1201872 3 0.6040 0.17381 0.000 0.156 0.560 0.000 0.284
#> SRR1201980 3 0.3521 0.63514 0.000 0.232 0.764 0.000 0.004
#> SRR1201979 3 0.3171 0.63398 0.000 0.176 0.816 0.000 0.008
#> SRR1201982 3 0.4029 0.55863 0.000 0.316 0.680 0.000 0.004
#> SRR1201981 3 0.3795 0.62486 0.000 0.192 0.780 0.000 0.028
#> SRR1201998 3 0.4562 0.05229 0.000 0.496 0.496 0.000 0.008
#> SRR1201996 3 0.4902 0.11880 0.000 0.468 0.508 0.000 0.024
#> SRR1201997 2 0.4533 0.12200 0.000 0.544 0.448 0.000 0.008
#> SRR1202005 2 0.4354 0.35873 0.000 0.624 0.368 0.000 0.008
#> SRR1202006 2 0.4088 0.48971 0.000 0.688 0.304 0.000 0.008
#> SRR1202088 3 0.4415 0.38044 0.000 0.444 0.552 0.000 0.004
#> SRR1202087 3 0.6354 0.12184 0.000 0.216 0.520 0.000 0.264
#> SRR1202093 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1202092 2 0.2974 0.76157 0.000 0.868 0.080 0.000 0.052
#> SRR1202288 2 0.2079 0.79038 0.000 0.916 0.020 0.000 0.064
#> SRR1202289 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1202299 2 0.0000 0.82586 0.000 1.000 0.000 0.000 0.000
#> SRR1202298 2 0.0290 0.82526 0.000 0.992 0.000 0.000 0.008
#> SRR1202303 4 0.2491 0.87044 0.000 0.000 0.036 0.896 0.068
#> SRR1202372 2 0.0162 0.82599 0.000 0.996 0.000 0.000 0.004
#> SRR1202371 2 0.2144 0.78772 0.000 0.912 0.020 0.000 0.068
#> SRR1202563 2 0.5574 0.19906 0.000 0.512 0.416 0.000 0.072
#> SRR1202565 2 0.4235 0.42873 0.000 0.656 0.336 0.000 0.008
#> SRR1202564 2 0.4235 0.42873 0.000 0.656 0.336 0.000 0.008
#> SRR1202649 3 0.4972 0.54078 0.000 0.260 0.672 0.000 0.068
#> SRR1202650 2 0.5371 0.18922 0.000 0.524 0.420 0.000 0.056
#> SRR1202651 2 0.0794 0.81393 0.000 0.972 0.028 0.000 0.000
#> SRR1202843 1 0.2127 0.89791 0.892 0.000 0.000 0.000 0.108
#> SRR1202844 1 0.2127 0.89791 0.892 0.000 0.000 0.000 0.108
#> SRR1202845 3 0.5403 0.02755 0.000 0.456 0.488 0.000 0.056
#> SRR1202847 2 0.4948 0.13831 0.000 0.536 0.436 0.000 0.028
#> SRR1202846 2 0.4948 0.13831 0.000 0.536 0.436 0.000 0.028
#> SRR1202945 1 0.2127 0.89791 0.892 0.000 0.000 0.000 0.108
#> SRR1202949 1 0.2193 0.90102 0.912 0.000 0.028 0.000 0.060
#> SRR1202977 1 0.2260 0.90017 0.908 0.000 0.028 0.000 0.064
#> SRR1202978 1 0.2230 0.89560 0.884 0.000 0.000 0.000 0.116
#> SRR1202979 1 0.2179 0.89456 0.888 0.000 0.000 0.000 0.112
#> SRR1202990 1 0.2260 0.90017 0.908 0.000 0.028 0.000 0.064
#> SRR1202999 1 0.2439 0.89686 0.876 0.000 0.004 0.000 0.120
#> SRR1203005 1 0.2179 0.89794 0.888 0.000 0.000 0.000 0.112
#> SRR1203006 1 0.2074 0.89933 0.896 0.000 0.000 0.000 0.104
#> SRR1203007 1 0.2127 0.89791 0.892 0.000 0.000 0.000 0.108
#> SRR1203009 1 0.2260 0.90611 0.908 0.000 0.028 0.000 0.064
#> SRR1203008 1 0.2260 0.90611 0.908 0.000 0.028 0.000 0.064
#> SRR1203010 1 0.1907 0.90380 0.928 0.000 0.028 0.000 0.044
#> SRR1203011 1 0.1907 0.90624 0.928 0.000 0.028 0.000 0.044
#> SRR1203025 1 0.1830 0.90476 0.932 0.000 0.028 0.000 0.040
#> SRR1203026 1 0.1830 0.90533 0.932 0.000 0.028 0.000 0.040
#> SRR1203027 1 0.2193 0.90102 0.912 0.000 0.028 0.000 0.060
#> SRR1203061 1 0.2612 0.88234 0.868 0.000 0.008 0.000 0.124
#> SRR1203089 1 0.2230 0.88852 0.884 0.000 0.000 0.000 0.116
#> SRR1203125 1 0.2127 0.89255 0.892 0.000 0.000 0.000 0.108
#> SRR1203128 1 0.2127 0.89791 0.892 0.000 0.000 0.000 0.108
#> SRR1203129 1 0.2127 0.89791 0.892 0.000 0.000 0.000 0.108
#> SRR1203130 1 0.2127 0.89791 0.892 0.000 0.000 0.000 0.108
#> SRR1203132 3 0.3491 0.63716 0.000 0.228 0.768 0.000 0.004
#> SRR1203131 3 0.3495 0.61666 0.000 0.160 0.812 0.000 0.028
#> SRR1203133 1 0.2127 0.89791 0.892 0.000 0.000 0.000 0.108
#> SRR1203138 1 0.2338 0.89769 0.884 0.000 0.004 0.000 0.112
#> SRR1203760 1 0.2179 0.89209 0.888 0.000 0.000 0.000 0.112
#> SRR1203761 1 0.2488 0.88473 0.872 0.000 0.004 0.000 0.124
#> SRR1203770 1 0.2127 0.89791 0.892 0.000 0.000 0.000 0.108
#> SRR1203771 1 0.2325 0.90564 0.904 0.000 0.028 0.000 0.068
#> SRR1203772 1 0.2488 0.89635 0.872 0.000 0.004 0.000 0.124
#> SRR1203773 1 0.2891 0.89416 0.824 0.000 0.000 0.000 0.176
#> SRR1203774 1 0.2612 0.88234 0.868 0.000 0.008 0.000 0.124
#> SRR1203775 1 0.2707 0.88048 0.860 0.000 0.008 0.000 0.132
#> SRR1203800 1 0.2753 0.88952 0.856 0.000 0.008 0.000 0.136
#> SRR1203801 1 0.3003 0.89190 0.812 0.000 0.000 0.000 0.188
#> SRR1203802 1 0.2127 0.89791 0.892 0.000 0.000 0.000 0.108
#> SRR1203803 1 0.2127 0.89791 0.892 0.000 0.000 0.000 0.108
#> SRR1203804 1 0.2450 0.89827 0.896 0.000 0.028 0.000 0.076
#> SRR1203805 1 0.2260 0.90017 0.908 0.000 0.028 0.000 0.064
#> SRR1203806 1 0.2690 0.89812 0.844 0.000 0.000 0.000 0.156
#> SRR1203807 1 0.2488 0.88365 0.872 0.000 0.004 0.000 0.124
#> SRR1203808 1 0.3333 0.88794 0.788 0.000 0.004 0.000 0.208
#> SRR1203811 1 0.2660 0.88818 0.864 0.000 0.008 0.000 0.128
#> SRR1203812 1 0.2260 0.90017 0.908 0.000 0.028 0.000 0.064
#> SRR1203813 1 0.1750 0.90504 0.936 0.000 0.028 0.000 0.036
#> SRR1203814 1 0.1082 0.91435 0.964 0.000 0.008 0.000 0.028
#> SRR1203815 1 0.1908 0.90198 0.908 0.000 0.000 0.000 0.092
#> SRR1203816 1 0.2230 0.89751 0.884 0.000 0.000 0.000 0.116
#> SRR1203817 1 0.1597 0.90827 0.940 0.000 0.012 0.000 0.048
#> SRR1203818 1 0.2488 0.89635 0.872 0.000 0.004 0.000 0.124
#> SRR1203819 1 0.2179 0.89755 0.888 0.000 0.000 0.000 0.112
#> SRR1203822 1 0.2127 0.89791 0.892 0.000 0.000 0.000 0.108
#> SRR1203823 1 0.1485 0.91174 0.948 0.000 0.020 0.000 0.032
#> SRR1203824 1 0.1851 0.91370 0.912 0.000 0.000 0.000 0.088
#> SRR1203825 1 0.2127 0.89791 0.892 0.000 0.000 0.000 0.108
#> SRR1203826 1 0.2439 0.89686 0.876 0.000 0.004 0.000 0.120
#> SRR1203827 4 0.2464 0.86822 0.000 0.000 0.016 0.888 0.096
#> SRR1203828 1 0.1750 0.90504 0.936 0.000 0.028 0.000 0.036
#> SRR1203829 1 0.2230 0.89751 0.884 0.000 0.000 0.000 0.116
#> SRR1203830 1 0.2127 0.89791 0.892 0.000 0.000 0.000 0.108
#> SRR1203831 1 0.2362 0.90024 0.900 0.000 0.024 0.000 0.076
#> SRR1203832 1 0.2260 0.90017 0.908 0.000 0.028 0.000 0.064
#> SRR1203833 1 0.2280 0.88860 0.880 0.000 0.000 0.000 0.120
#> SRR1203834 1 0.2069 0.90253 0.912 0.000 0.012 0.000 0.076
#> SRR1203835 1 0.2127 0.89791 0.892 0.000 0.000 0.000 0.108
#> SRR1203836 1 0.2329 0.88727 0.876 0.000 0.000 0.000 0.124
#> SRR1203837 1 0.1792 0.91379 0.916 0.000 0.000 0.000 0.084
#> SRR1203838 1 0.2074 0.89395 0.896 0.000 0.000 0.000 0.104
#> SRR1203839 1 0.2127 0.89791 0.892 0.000 0.000 0.000 0.108
#> SRR1203842 4 0.2305 0.86802 0.000 0.000 0.012 0.896 0.092
#> SRR1203843 1 0.2338 0.88832 0.884 0.000 0.004 0.000 0.112
#> SRR1203845 2 0.4067 0.49621 0.000 0.692 0.300 0.000 0.008
#> SRR1203844 2 0.4456 0.47854 0.000 0.660 0.320 0.000 0.020
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 2 0.0405 0.8368 0.000 0.988 0.008 0.000 0.000 NA
#> SRR1201590 2 0.1409 0.8258 0.000 0.948 0.012 0.000 0.008 NA
#> SRR1201593 2 0.0520 0.8373 0.000 0.984 0.008 0.000 0.000 NA
#> SRR1201592 2 0.0820 0.8304 0.000 0.972 0.012 0.000 0.000 NA
#> SRR1201617 2 0.0260 0.8365 0.000 0.992 0.008 0.000 0.000 NA
#> SRR1201616 2 0.0984 0.8296 0.000 0.968 0.012 0.000 0.008 NA
#> SRR1201619 2 0.2618 0.8010 0.000 0.872 0.052 0.000 0.000 NA
#> SRR1201618 2 0.5701 0.4201 0.000 0.564 0.212 0.000 0.008 NA
#> SRR1201620 2 0.3309 0.7523 0.000 0.788 0.016 0.000 0.004 NA
#> SRR1201621 2 0.1524 0.8340 0.000 0.932 0.008 0.000 0.000 NA
#> SRR1201623 3 0.5113 -0.0342 0.000 0.056 0.592 0.000 0.332 NA
#> SRR1201622 3 0.5395 -0.1310 0.000 0.048 0.560 0.000 0.352 NA
#> SRR1201624 4 0.4045 0.6961 0.000 0.000 0.000 0.564 0.428 NA
#> SRR1201625 5 0.3374 0.7413 0.000 0.020 0.208 0.000 0.772 NA
#> SRR1201626 4 0.2880 0.8265 0.000 0.000 0.024 0.872 0.048 NA
#> SRR1201627 4 0.1957 0.8392 0.000 0.000 0.000 0.888 0.112 NA
#> SRR1201628 3 0.2556 0.5626 0.000 0.052 0.888 0.000 0.012 NA
#> SRR1201629 3 0.1913 0.5879 0.000 0.080 0.908 0.000 0.000 NA
#> SRR1201630 3 0.5582 0.5043 0.000 0.228 0.592 0.000 0.012 NA
#> SRR1201631 3 0.5270 0.3990 0.000 0.352 0.548 0.000 0.004 NA
#> SRR1201641 3 0.5249 0.3834 0.000 0.360 0.544 0.000 0.004 NA
#> SRR1201640 3 0.5338 0.5043 0.000 0.284 0.592 0.000 0.008 NA
#> SRR1201643 3 0.3775 0.5613 0.000 0.068 0.796 0.000 0.012 NA
#> SRR1201644 3 0.3693 0.5847 0.000 0.116 0.796 0.000 0.004 NA
#> SRR1201661 3 0.5687 0.4442 0.000 0.284 0.548 0.000 0.008 NA
#> SRR1201662 3 0.5404 0.2499 0.000 0.408 0.488 0.000 0.004 NA
#> SRR1201663 5 0.4040 0.8426 0.000 0.032 0.280 0.000 0.688 NA
#> SRR1201664 5 0.4569 0.7065 0.000 0.040 0.396 0.000 0.564 NA
#> SRR1201665 2 0.3309 0.7229 0.000 0.788 0.016 0.000 0.004 NA
#> SRR1201666 2 0.1049 0.8309 0.000 0.960 0.008 0.000 0.000 NA
#> SRR1201667 2 0.1049 0.8309 0.000 0.960 0.008 0.000 0.000 NA
#> SRR1201668 5 0.4087 0.8390 0.000 0.036 0.276 0.000 0.688 NA
#> SRR1201670 5 0.4735 0.6688 0.000 0.040 0.416 0.000 0.540 NA
#> SRR1201669 5 0.4735 0.6688 0.000 0.040 0.416 0.000 0.540 NA
#> SRR1201673 2 0.4911 0.2026 0.000 0.548 0.384 0.000 0.000 NA
#> SRR1201672 2 0.4911 0.2026 0.000 0.548 0.384 0.000 0.000 NA
#> SRR1201671 3 0.5181 0.4273 0.000 0.280 0.604 0.000 0.004 NA
#> SRR1201677 2 0.4911 0.2026 0.000 0.548 0.384 0.000 0.000 NA
#> SRR1201676 2 0.4911 0.2026 0.000 0.548 0.384 0.000 0.000 NA
#> SRR1201675 2 0.4911 0.2026 0.000 0.548 0.384 0.000 0.000 NA
#> SRR1201674 2 0.4911 0.2026 0.000 0.548 0.384 0.000 0.000 NA
#> SRR1201678 2 0.4911 0.2026 0.000 0.548 0.384 0.000 0.000 NA
#> SRR1201682 2 0.1895 0.8247 0.000 0.912 0.016 0.000 0.000 NA
#> SRR1201683 2 0.1895 0.8247 0.000 0.912 0.016 0.000 0.000 NA
#> SRR1201680 2 0.1895 0.8247 0.000 0.912 0.016 0.000 0.000 NA
#> SRR1201681 2 0.1895 0.8247 0.000 0.912 0.016 0.000 0.000 NA
#> SRR1201679 2 0.2500 0.8057 0.000 0.868 0.012 0.000 0.004 NA
#> SRR1201686 5 0.4127 0.8459 0.000 0.036 0.284 0.000 0.680 NA
#> SRR1201687 5 0.4127 0.8459 0.000 0.036 0.284 0.000 0.680 NA
#> SRR1201688 5 0.4127 0.8459 0.000 0.036 0.284 0.000 0.680 NA
#> SRR1201689 5 0.4127 0.8459 0.000 0.036 0.284 0.000 0.680 NA
#> SRR1201685 5 0.3625 0.7346 0.000 0.020 0.204 0.004 0.768 NA
#> SRR1201692 3 0.2170 0.5979 0.000 0.100 0.888 0.000 0.000 NA
#> SRR1201691 3 0.2170 0.5979 0.000 0.100 0.888 0.000 0.000 NA
#> SRR1201690 3 0.2361 0.5801 0.000 0.064 0.896 0.000 0.008 NA
#> SRR1201696 3 0.2170 0.5979 0.000 0.100 0.888 0.000 0.000 NA
#> SRR1201695 3 0.2170 0.5979 0.000 0.100 0.888 0.000 0.000 NA
#> SRR1201694 3 0.2170 0.5979 0.000 0.100 0.888 0.000 0.000 NA
#> SRR1201693 3 0.2170 0.5979 0.000 0.100 0.888 0.000 0.000 NA
#> SRR1201697 3 0.2170 0.5979 0.000 0.100 0.888 0.000 0.000 NA
#> SRR1201698 3 0.2170 0.5979 0.000 0.100 0.888 0.000 0.000 NA
#> SRR1201700 3 0.2101 0.5643 0.000 0.052 0.912 0.000 0.008 NA
#> SRR1201708 3 0.2151 0.5794 0.000 0.072 0.904 0.000 0.008 NA
#> SRR1201707 3 0.2151 0.5794 0.000 0.072 0.904 0.000 0.008 NA
#> SRR1201706 3 0.2151 0.5794 0.000 0.072 0.904 0.000 0.008 NA
#> SRR1201702 3 0.2151 0.5794 0.000 0.072 0.904 0.000 0.008 NA
#> SRR1201705 3 0.2151 0.5794 0.000 0.072 0.904 0.000 0.008 NA
#> SRR1201701 3 0.2151 0.5794 0.000 0.072 0.904 0.000 0.008 NA
#> SRR1201704 3 0.2151 0.5794 0.000 0.072 0.904 0.000 0.008 NA
#> SRR1201703 3 0.2151 0.5794 0.000 0.072 0.904 0.000 0.008 NA
#> SRR1201716 3 0.4594 -0.0337 0.000 0.052 0.608 0.000 0.340 NA
#> SRR1201715 3 0.4594 -0.0337 0.000 0.052 0.608 0.000 0.340 NA
#> SRR1201717 3 0.4594 -0.0337 0.000 0.052 0.608 0.000 0.340 NA
#> SRR1201712 3 0.4594 -0.0337 0.000 0.052 0.608 0.000 0.340 NA
#> SRR1201709 3 0.4892 -0.0971 0.000 0.048 0.592 0.000 0.348 NA
#> SRR1201711 3 0.4594 -0.0337 0.000 0.052 0.608 0.000 0.340 NA
#> SRR1201714 3 0.4594 -0.0337 0.000 0.052 0.608 0.000 0.340 NA
#> SRR1201713 3 0.4594 -0.0337 0.000 0.052 0.608 0.000 0.340 NA
#> SRR1201710 3 0.4594 -0.0337 0.000 0.052 0.608 0.000 0.340 NA
#> SRR1201719 3 0.5448 0.1988 0.000 0.420 0.472 0.000 0.004 NA
#> SRR1201718 3 0.5416 0.4116 0.000 0.340 0.548 0.000 0.008 NA
#> SRR1201721 3 0.2876 0.5827 0.000 0.080 0.860 0.000 0.004 NA
#> SRR1201720 3 0.2825 0.5718 0.000 0.060 0.868 0.000 0.008 NA
#> SRR1201723 3 0.4573 -0.1633 0.000 0.044 0.584 0.000 0.372 NA
#> SRR1201722 5 0.4566 0.7631 0.000 0.036 0.364 0.000 0.596 NA
#> SRR1201725 3 0.5200 0.4023 0.000 0.356 0.552 0.000 0.004 NA
#> SRR1201724 3 0.5391 0.5112 0.000 0.264 0.596 0.000 0.008 NA
#> SRR1201726 3 0.5330 -0.0080 0.000 0.048 0.596 0.000 0.312 NA
#> SRR1201727 3 0.2862 0.5625 0.000 0.056 0.872 0.000 0.020 NA
#> SRR1201731 3 0.3502 0.5863 0.000 0.108 0.812 0.000 0.004 NA
#> SRR1201730 3 0.3307 0.5674 0.000 0.064 0.832 0.000 0.008 NA
#> SRR1201734 2 0.0891 0.8327 0.000 0.968 0.008 0.000 0.000 NA
#> SRR1201733 2 0.3109 0.7419 0.000 0.812 0.016 0.000 0.004 NA
#> SRR1201736 2 0.4219 0.6628 0.000 0.720 0.048 0.000 0.008 NA
#> SRR1201737 2 0.1434 0.8269 0.000 0.940 0.012 0.000 0.000 NA
#> SRR1201739 2 0.1049 0.8309 0.000 0.960 0.008 0.000 0.000 NA
#> SRR1201738 2 0.2886 0.7612 0.000 0.836 0.016 0.000 0.004 NA
#> SRR1201742 2 0.5931 0.2616 0.000 0.496 0.260 0.000 0.004 NA
#> SRR1201743 2 0.3206 0.7560 0.000 0.828 0.104 0.000 0.000 NA
#> SRR1201745 2 0.1267 0.8356 0.000 0.940 0.000 0.000 0.000 NA
#> SRR1201744 2 0.3678 0.7028 0.000 0.748 0.016 0.000 0.008 NA
#> SRR1201749 2 0.3624 0.6957 0.000 0.756 0.016 0.000 0.008 NA
#> SRR1201750 2 0.1265 0.8330 0.000 0.948 0.008 0.000 0.000 NA
#> SRR1201752 3 0.2860 0.5902 0.000 0.100 0.852 0.000 0.000 NA
#> SRR1201751 3 0.2994 0.5709 0.000 0.064 0.852 0.000 0.004 NA
#> SRR1201754 2 0.1951 0.8321 0.000 0.908 0.016 0.000 0.000 NA
#> SRR1201753 2 0.4843 0.6394 0.000 0.668 0.112 0.000 0.004 NA
#> SRR1201758 5 0.4766 -0.2487 0.000 0.004 0.060 0.320 0.616 NA
#> SRR1201759 5 0.3432 0.7544 0.000 0.020 0.216 0.000 0.764 NA
#> SRR1201760 3 0.2034 0.5765 0.000 0.060 0.912 0.000 0.004 NA
#> SRR1201761 3 0.1812 0.5862 0.000 0.080 0.912 0.000 0.000 NA
#> SRR1201763 4 0.4878 0.5251 0.000 0.000 0.040 0.484 0.468 NA
#> SRR1201762 4 0.0551 0.8375 0.000 0.000 0.004 0.984 0.008 NA
#> SRR1201764 3 0.4853 0.4587 0.000 0.064 0.668 0.000 0.020 NA
#> SRR1201766 2 0.2306 0.8230 0.000 0.888 0.016 0.000 0.004 NA
#> SRR1201768 2 0.2162 0.8308 0.000 0.896 0.012 0.000 0.004 NA
#> SRR1201769 2 0.2162 0.8308 0.000 0.896 0.012 0.000 0.004 NA
#> SRR1201767 2 0.2162 0.8308 0.000 0.896 0.012 0.000 0.004 NA
#> SRR1201770 2 0.2162 0.8308 0.000 0.896 0.012 0.000 0.004 NA
#> SRR1201771 2 0.2162 0.8308 0.000 0.896 0.012 0.000 0.004 NA
#> SRR1201772 2 0.2162 0.8308 0.000 0.896 0.012 0.000 0.004 NA
#> SRR1201773 2 0.2162 0.8308 0.000 0.896 0.012 0.000 0.004 NA
#> SRR1201774 2 0.2162 0.8308 0.000 0.896 0.012 0.000 0.004 NA
#> SRR1201786 2 0.2162 0.8308 0.000 0.896 0.012 0.000 0.004 NA
#> SRR1201784 2 0.2162 0.8308 0.000 0.896 0.012 0.000 0.004 NA
#> SRR1201785 2 0.2162 0.8308 0.000 0.896 0.012 0.000 0.004 NA
#> SRR1201778 2 0.2784 0.8041 0.000 0.848 0.012 0.000 0.008 NA
#> SRR1201779 2 0.2162 0.8308 0.000 0.896 0.012 0.000 0.004 NA
#> SRR1201781 2 0.2162 0.8308 0.000 0.896 0.012 0.000 0.004 NA
#> SRR1201780 2 0.2162 0.8308 0.000 0.896 0.012 0.000 0.004 NA
#> SRR1201783 2 0.2162 0.8308 0.000 0.896 0.012 0.000 0.004 NA
#> SRR1201782 2 0.2162 0.8308 0.000 0.896 0.012 0.000 0.004 NA
#> SRR1201798 2 0.0260 0.8365 0.000 0.992 0.008 0.000 0.000 NA
#> SRR1201797 2 0.0260 0.8365 0.000 0.992 0.008 0.000 0.000 NA
#> SRR1201796 2 0.0260 0.8365 0.000 0.992 0.008 0.000 0.000 NA
#> SRR1201795 2 0.0260 0.8365 0.000 0.992 0.008 0.000 0.000 NA
#> SRR1201799 2 0.0260 0.8365 0.000 0.992 0.008 0.000 0.000 NA
#> SRR1201794 2 0.0260 0.8365 0.000 0.992 0.008 0.000 0.000 NA
#> SRR1201793 2 0.0260 0.8365 0.000 0.992 0.008 0.000 0.000 NA
#> SRR1201792 2 0.0260 0.8365 0.000 0.992 0.008 0.000 0.000 NA
#> SRR1201791 2 0.0547 0.8346 0.000 0.980 0.000 0.000 0.000 NA
#> SRR1201807 2 0.2446 0.8267 0.000 0.864 0.012 0.000 0.000 NA
#> SRR1201808 2 0.2446 0.8267 0.000 0.864 0.012 0.000 0.000 NA
#> SRR1201803 2 0.2446 0.8267 0.000 0.864 0.012 0.000 0.000 NA
#> SRR1201804 2 0.2446 0.8267 0.000 0.864 0.012 0.000 0.000 NA
#> SRR1201805 2 0.2446 0.8267 0.000 0.864 0.012 0.000 0.000 NA
#> SRR1201806 2 0.2446 0.8267 0.000 0.864 0.012 0.000 0.000 NA
#> SRR1201801 2 0.2446 0.8267 0.000 0.864 0.012 0.000 0.000 NA
#> SRR1201802 2 0.2446 0.8267 0.000 0.864 0.012 0.000 0.000 NA
#> SRR1201800 2 0.2178 0.8260 0.000 0.868 0.000 0.000 0.000 NA
#> SRR1201814 2 0.2489 0.8260 0.000 0.860 0.012 0.000 0.000 NA
#> SRR1201816 2 0.2489 0.8260 0.000 0.860 0.012 0.000 0.000 NA
#> SRR1201815 2 0.2489 0.8260 0.000 0.860 0.012 0.000 0.000 NA
#> SRR1201819 2 0.2489 0.8260 0.000 0.860 0.012 0.000 0.000 NA
#> SRR1201820 2 0.2489 0.8260 0.000 0.860 0.012 0.000 0.000 NA
#> SRR1201813 2 0.2531 0.8255 0.000 0.856 0.012 0.000 0.000 NA
#> SRR1201817 2 0.2489 0.8260 0.000 0.860 0.012 0.000 0.000 NA
#> SRR1201818 2 0.2489 0.8260 0.000 0.860 0.012 0.000 0.000 NA
#> SRR1201825 3 0.6287 -0.2781 0.000 0.052 0.484 0.000 0.344 NA
#> SRR1201827 3 0.4843 0.4992 0.000 0.300 0.616 0.000 0.000 NA
#> SRR1201828 3 0.4843 0.4992 0.000 0.300 0.616 0.000 0.000 NA
#> SRR1201826 3 0.4860 0.4756 0.000 0.092 0.664 0.000 0.008 NA
#> SRR1201829 3 0.4843 0.4992 0.000 0.300 0.616 0.000 0.000 NA
#> SRR1201830 3 0.4843 0.4992 0.000 0.300 0.616 0.000 0.000 NA
#> SRR1201831 3 0.4843 0.4992 0.000 0.300 0.616 0.000 0.000 NA
#> SRR1201832 3 0.4843 0.4992 0.000 0.300 0.616 0.000 0.000 NA
#> SRR1201833 3 0.4843 0.4992 0.000 0.300 0.616 0.000 0.000 NA
#> SRR1201865 3 0.5654 0.0683 0.000 0.076 0.576 0.000 0.304 NA
#> SRR1201866 3 0.5654 0.0683 0.000 0.076 0.576 0.000 0.304 NA
#> SRR1201867 3 0.5654 0.0683 0.000 0.076 0.576 0.000 0.304 NA
#> SRR1201861 3 0.5654 0.0683 0.000 0.076 0.576 0.000 0.304 NA
#> SRR1201862 3 0.5654 0.0683 0.000 0.076 0.576 0.000 0.304 NA
#> SRR1201863 3 0.5654 0.0683 0.000 0.076 0.576 0.000 0.304 NA
#> SRR1201859 3 0.6328 -0.2441 0.000 0.056 0.484 0.000 0.340 NA
#> SRR1201864 3 0.5654 0.0683 0.000 0.076 0.576 0.000 0.304 NA
#> SRR1201860 3 0.5654 0.0683 0.000 0.076 0.576 0.000 0.304 NA
#> SRR1201873 3 0.4844 -0.0628 0.000 0.052 0.596 0.000 0.344 NA
#> SRR1201871 3 0.5207 -0.1165 0.000 0.048 0.572 0.000 0.352 NA
#> SRR1201872 3 0.4844 -0.0628 0.000 0.052 0.596 0.000 0.344 NA
#> SRR1201980 3 0.2266 0.5983 0.000 0.108 0.880 0.000 0.000 NA
#> SRR1201979 3 0.2094 0.5829 0.000 0.064 0.908 0.000 0.004 NA
#> SRR1201982 3 0.4033 0.5763 0.000 0.168 0.756 0.000 0.004 NA
#> SRR1201981 3 0.4135 0.5419 0.000 0.072 0.760 0.000 0.012 NA
#> SRR1201998 3 0.4989 0.5152 0.000 0.292 0.616 0.000 0.004 NA
#> SRR1201996 3 0.5314 0.5176 0.000 0.248 0.612 0.000 0.008 NA
#> SRR1201997 3 0.5145 0.4382 0.000 0.336 0.572 0.000 0.004 NA
#> SRR1202005 2 0.5457 -0.1216 0.000 0.448 0.444 0.000 0.004 NA
#> SRR1202006 2 0.5414 0.0906 0.000 0.504 0.388 0.000 0.004 NA
#> SRR1202088 3 0.5070 0.3036 0.000 0.352 0.572 0.000 0.008 NA
#> SRR1202087 3 0.6625 -0.0748 0.000 0.168 0.512 0.000 0.240 NA
#> SRR1202093 2 0.1462 0.8257 0.000 0.936 0.008 0.000 0.000 NA
#> SRR1202092 2 0.3785 0.7300 0.000 0.788 0.088 0.000 0.004 NA
#> SRR1202288 2 0.3178 0.7331 0.000 0.804 0.016 0.000 0.004 NA
#> SRR1202289 2 0.0603 0.8357 0.000 0.980 0.004 0.000 0.000 NA
#> SRR1202299 2 0.2346 0.8279 0.000 0.868 0.008 0.000 0.000 NA
#> SRR1202298 2 0.2178 0.8260 0.000 0.868 0.000 0.000 0.000 NA
#> SRR1202303 4 0.1957 0.8392 0.000 0.000 0.000 0.888 0.112 NA
#> SRR1202372 2 0.1398 0.8348 0.000 0.940 0.008 0.000 0.000 NA
#> SRR1202371 2 0.3459 0.7238 0.000 0.768 0.016 0.000 0.004 NA
#> SRR1202563 3 0.6305 0.1820 0.000 0.340 0.372 0.000 0.008 NA
#> SRR1202565 2 0.5249 0.1932 0.000 0.528 0.368 0.000 0.000 NA
#> SRR1202564 2 0.5249 0.1932 0.000 0.528 0.368 0.000 0.000 NA
#> SRR1202649 3 0.5663 0.4030 0.000 0.160 0.572 0.000 0.012 NA
#> SRR1202650 3 0.6157 0.2616 0.000 0.328 0.436 0.000 0.008 NA
#> SRR1202651 2 0.2965 0.7990 0.000 0.848 0.080 0.000 0.000 NA
#> SRR1202843 1 0.0000 0.8546 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1202844 1 0.0000 0.8546 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1202845 3 0.5903 0.4729 0.000 0.240 0.548 0.000 0.016 NA
#> SRR1202847 3 0.5418 0.3834 0.000 0.356 0.536 0.000 0.008 NA
#> SRR1202846 3 0.5418 0.3834 0.000 0.356 0.536 0.000 0.008 NA
#> SRR1202945 1 0.0000 0.8546 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1202949 1 0.4099 0.8609 0.748 0.000 0.020 0.000 0.036 NA
#> SRR1202977 1 0.4129 0.8602 0.744 0.000 0.020 0.000 0.036 NA
#> SRR1202978 1 0.3409 0.8411 0.700 0.000 0.000 0.000 0.000 NA
#> SRR1202979 1 0.3409 0.8430 0.700 0.000 0.000 0.000 0.000 NA
#> SRR1202990 1 0.4129 0.8602 0.744 0.000 0.020 0.000 0.036 NA
#> SRR1202999 1 0.0291 0.8542 0.992 0.000 0.000 0.000 0.004 NA
#> SRR1203005 1 0.0146 0.8540 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1203006 1 0.0000 0.8546 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203007 1 0.0000 0.8546 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203009 1 0.3792 0.8660 0.792 0.000 0.020 0.000 0.044 NA
#> SRR1203008 1 0.3792 0.8660 0.792 0.000 0.020 0.000 0.044 NA
#> SRR1203010 1 0.3958 0.8635 0.764 0.000 0.016 0.000 0.040 NA
#> SRR1203011 1 0.3686 0.8695 0.792 0.000 0.016 0.000 0.036 NA
#> SRR1203025 1 0.3893 0.8647 0.772 0.000 0.016 0.000 0.040 NA
#> SRR1203026 1 0.3859 0.8648 0.776 0.000 0.016 0.000 0.040 NA
#> SRR1203027 1 0.4099 0.8609 0.748 0.000 0.020 0.000 0.036 NA
#> SRR1203061 1 0.3482 0.8350 0.684 0.000 0.000 0.000 0.000 NA
#> SRR1203089 1 0.3464 0.8364 0.688 0.000 0.000 0.000 0.000 NA
#> SRR1203125 1 0.3584 0.8375 0.688 0.000 0.004 0.000 0.000 NA
#> SRR1203128 1 0.0000 0.8546 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203129 1 0.0000 0.8546 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203130 1 0.0000 0.8546 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203132 3 0.3308 0.5847 0.000 0.096 0.828 0.000 0.004 NA
#> SRR1203131 3 0.4044 0.5361 0.000 0.064 0.772 0.000 0.016 NA
#> SRR1203133 1 0.0000 0.8546 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203138 1 0.0405 0.8543 0.988 0.000 0.000 0.000 0.008 NA
#> SRR1203760 1 0.3390 0.8420 0.704 0.000 0.000 0.000 0.000 NA
#> SRR1203761 1 0.3482 0.8350 0.684 0.000 0.000 0.000 0.000 NA
#> SRR1203770 1 0.0260 0.8543 0.992 0.000 0.000 0.000 0.000 NA
#> SRR1203771 1 0.2973 0.8649 0.860 0.000 0.016 0.000 0.040 NA
#> SRR1203772 1 0.0717 0.8521 0.976 0.000 0.000 0.000 0.008 NA
#> SRR1203773 1 0.2941 0.8463 0.780 0.000 0.000 0.000 0.000 NA
#> SRR1203774 1 0.3601 0.8352 0.684 0.000 0.004 0.000 0.000 NA
#> SRR1203775 1 0.3636 0.8334 0.676 0.000 0.004 0.000 0.000 NA
#> SRR1203800 1 0.3489 0.8414 0.708 0.000 0.004 0.000 0.000 NA
#> SRR1203801 1 0.1957 0.8466 0.888 0.000 0.000 0.000 0.000 NA
#> SRR1203802 1 0.0000 0.8546 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203803 1 0.0146 0.8540 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1203804 1 0.4321 0.8542 0.716 0.000 0.020 0.000 0.036 NA
#> SRR1203805 1 0.4129 0.8602 0.744 0.000 0.020 0.000 0.036 NA
#> SRR1203806 1 0.2378 0.8503 0.848 0.000 0.000 0.000 0.000 NA
#> SRR1203807 1 0.3482 0.8350 0.684 0.000 0.000 0.000 0.000 NA
#> SRR1203808 1 0.2378 0.8378 0.848 0.000 0.000 0.000 0.000 NA
#> SRR1203811 1 0.3409 0.8396 0.700 0.000 0.000 0.000 0.000 NA
#> SRR1203812 1 0.4129 0.8602 0.744 0.000 0.020 0.000 0.036 NA
#> SRR1203813 1 0.3859 0.8648 0.776 0.000 0.016 0.000 0.040 NA
#> SRR1203814 1 0.2773 0.8775 0.836 0.000 0.004 0.000 0.008 NA
#> SRR1203815 1 0.3266 0.8554 0.728 0.000 0.000 0.000 0.000 NA
#> SRR1203816 1 0.0291 0.8542 0.992 0.000 0.000 0.000 0.004 NA
#> SRR1203817 1 0.3418 0.8718 0.784 0.000 0.008 0.000 0.016 NA
#> SRR1203818 1 0.0717 0.8521 0.976 0.000 0.000 0.000 0.008 NA
#> SRR1203819 1 0.0146 0.8540 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1203822 1 0.0000 0.8546 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203823 1 0.3015 0.8748 0.844 0.000 0.012 0.000 0.024 NA
#> SRR1203824 1 0.2402 0.8765 0.868 0.000 0.000 0.000 0.012 NA
#> SRR1203825 1 0.0000 0.8546 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203826 1 0.0520 0.8538 0.984 0.000 0.000 0.000 0.008 NA
#> SRR1203827 4 0.4619 0.8091 0.000 0.000 0.004 0.704 0.124 NA
#> SRR1203828 1 0.3859 0.8648 0.776 0.000 0.016 0.000 0.040 NA
#> SRR1203829 1 0.0291 0.8542 0.992 0.000 0.000 0.000 0.004 NA
#> SRR1203830 1 0.0146 0.8543 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1203831 1 0.4012 0.8585 0.724 0.000 0.012 0.000 0.024 NA
#> SRR1203832 1 0.4214 0.8579 0.732 0.000 0.020 0.000 0.036 NA
#> SRR1203833 1 0.3584 0.8375 0.688 0.000 0.004 0.000 0.000 NA
#> SRR1203834 1 0.3962 0.8597 0.732 0.000 0.012 0.000 0.024 NA
#> SRR1203835 1 0.0000 0.8546 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203836 1 0.3464 0.8372 0.688 0.000 0.000 0.000 0.000 NA
#> SRR1203837 1 0.2932 0.8759 0.836 0.000 0.004 0.000 0.020 NA
#> SRR1203838 1 0.3409 0.8433 0.700 0.000 0.000 0.000 0.000 NA
#> SRR1203839 1 0.0000 0.8546 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203842 4 0.4499 0.8097 0.000 0.000 0.004 0.716 0.112 NA
#> SRR1203843 1 0.3547 0.8389 0.696 0.000 0.004 0.000 0.000 NA
#> SRR1203845 2 0.5402 0.1183 0.000 0.512 0.380 0.000 0.004 NA
#> SRR1203844 2 0.5961 -0.0315 0.000 0.432 0.392 0.000 0.008 NA
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["SD", "skmeans"]
# you can also extract it by
# res = res_list["SD:skmeans"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'SD' method.
#> Subgroups are detected by 'skmeans' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 3.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 0.995 0.998 0.3979 0.604 0.604
#> 3 3 0.918 0.934 0.965 0.2508 0.920 0.867
#> 4 4 0.757 0.768 0.902 0.3394 0.771 0.581
#> 5 5 0.809 0.860 0.923 0.0542 0.832 0.584
#> 6 6 0.810 0.807 0.902 0.0369 0.987 0.956
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 3
#> attr(,"optional")
#> [1] 2
There is also optional best \(k\) = 2 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0.000 0.997 0.000 1.000
#> SRR1201590 2 0.000 0.997 0.000 1.000
#> SRR1201593 2 0.000 0.997 0.000 1.000
#> SRR1201592 2 0.000 0.997 0.000 1.000
#> SRR1201617 2 0.000 0.997 0.000 1.000
#> SRR1201616 2 0.000 0.997 0.000 1.000
#> SRR1201619 2 0.000 0.997 0.000 1.000
#> SRR1201618 2 0.000 0.997 0.000 1.000
#> SRR1201620 2 0.000 0.997 0.000 1.000
#> SRR1201621 2 0.000 0.997 0.000 1.000
#> SRR1201623 2 0.000 0.997 0.000 1.000
#> SRR1201622 2 0.000 0.997 0.000 1.000
#> SRR1201624 2 0.900 0.538 0.316 0.684
#> SRR1201625 2 0.000 0.997 0.000 1.000
#> SRR1201626 1 0.000 0.999 1.000 0.000
#> SRR1201627 1 0.000 0.999 1.000 0.000
#> SRR1201628 2 0.000 0.997 0.000 1.000
#> SRR1201629 2 0.000 0.997 0.000 1.000
#> SRR1201630 2 0.000 0.997 0.000 1.000
#> SRR1201631 2 0.000 0.997 0.000 1.000
#> SRR1201641 2 0.000 0.997 0.000 1.000
#> SRR1201640 2 0.000 0.997 0.000 1.000
#> SRR1201643 2 0.000 0.997 0.000 1.000
#> SRR1201644 2 0.000 0.997 0.000 1.000
#> SRR1201661 2 0.000 0.997 0.000 1.000
#> SRR1201662 2 0.000 0.997 0.000 1.000
#> SRR1201663 2 0.000 0.997 0.000 1.000
#> SRR1201664 2 0.000 0.997 0.000 1.000
#> SRR1201665 2 0.000 0.997 0.000 1.000
#> SRR1201666 2 0.000 0.997 0.000 1.000
#> SRR1201667 2 0.000 0.997 0.000 1.000
#> SRR1201668 2 0.000 0.997 0.000 1.000
#> SRR1201670 2 0.000 0.997 0.000 1.000
#> SRR1201669 2 0.000 0.997 0.000 1.000
#> SRR1201673 2 0.000 0.997 0.000 1.000
#> SRR1201672 2 0.000 0.997 0.000 1.000
#> SRR1201671 2 0.000 0.997 0.000 1.000
#> SRR1201677 2 0.000 0.997 0.000 1.000
#> SRR1201676 2 0.000 0.997 0.000 1.000
#> SRR1201675 2 0.000 0.997 0.000 1.000
#> SRR1201674 2 0.000 0.997 0.000 1.000
#> SRR1201678 2 0.000 0.997 0.000 1.000
#> SRR1201682 2 0.000 0.997 0.000 1.000
#> SRR1201683 2 0.000 0.997 0.000 1.000
#> SRR1201680 2 0.000 0.997 0.000 1.000
#> SRR1201681 2 0.000 0.997 0.000 1.000
#> SRR1201679 2 0.000 0.997 0.000 1.000
#> SRR1201686 2 0.000 0.997 0.000 1.000
#> SRR1201687 2 0.000 0.997 0.000 1.000
#> SRR1201688 2 0.000 0.997 0.000 1.000
#> SRR1201689 2 0.000 0.997 0.000 1.000
#> SRR1201685 2 0.000 0.997 0.000 1.000
#> SRR1201692 2 0.000 0.997 0.000 1.000
#> SRR1201691 2 0.000 0.997 0.000 1.000
#> SRR1201690 2 0.000 0.997 0.000 1.000
#> SRR1201696 2 0.000 0.997 0.000 1.000
#> SRR1201695 2 0.000 0.997 0.000 1.000
#> SRR1201694 2 0.000 0.997 0.000 1.000
#> SRR1201693 2 0.000 0.997 0.000 1.000
#> SRR1201697 2 0.000 0.997 0.000 1.000
#> SRR1201698 2 0.000 0.997 0.000 1.000
#> SRR1201700 2 0.000 0.997 0.000 1.000
#> SRR1201708 2 0.000 0.997 0.000 1.000
#> SRR1201707 2 0.000 0.997 0.000 1.000
#> SRR1201706 2 0.000 0.997 0.000 1.000
#> SRR1201702 2 0.000 0.997 0.000 1.000
#> SRR1201705 2 0.000 0.997 0.000 1.000
#> SRR1201701 2 0.000 0.997 0.000 1.000
#> SRR1201704 2 0.000 0.997 0.000 1.000
#> SRR1201703 2 0.000 0.997 0.000 1.000
#> SRR1201716 2 0.000 0.997 0.000 1.000
#> SRR1201715 2 0.000 0.997 0.000 1.000
#> SRR1201717 2 0.000 0.997 0.000 1.000
#> SRR1201712 2 0.000 0.997 0.000 1.000
#> SRR1201709 2 0.000 0.997 0.000 1.000
#> SRR1201711 2 0.000 0.997 0.000 1.000
#> SRR1201714 2 0.000 0.997 0.000 1.000
#> SRR1201713 2 0.000 0.997 0.000 1.000
#> SRR1201710 2 0.000 0.997 0.000 1.000
#> SRR1201719 2 0.000 0.997 0.000 1.000
#> SRR1201718 2 0.000 0.997 0.000 1.000
#> SRR1201721 2 0.000 0.997 0.000 1.000
#> SRR1201720 2 0.000 0.997 0.000 1.000
#> SRR1201723 2 0.000 0.997 0.000 1.000
#> SRR1201722 2 0.000 0.997 0.000 1.000
#> SRR1201725 2 0.000 0.997 0.000 1.000
#> SRR1201724 2 0.000 0.997 0.000 1.000
#> SRR1201726 2 0.000 0.997 0.000 1.000
#> SRR1201727 2 0.000 0.997 0.000 1.000
#> SRR1201731 2 0.000 0.997 0.000 1.000
#> SRR1201730 2 0.000 0.997 0.000 1.000
#> SRR1201734 2 0.000 0.997 0.000 1.000
#> SRR1201733 2 0.000 0.997 0.000 1.000
#> SRR1201736 2 0.000 0.997 0.000 1.000
#> SRR1201737 2 0.000 0.997 0.000 1.000
#> SRR1201739 2 0.000 0.997 0.000 1.000
#> SRR1201738 2 0.000 0.997 0.000 1.000
#> SRR1201742 2 0.000 0.997 0.000 1.000
#> SRR1201743 2 0.000 0.997 0.000 1.000
#> SRR1201745 2 0.000 0.997 0.000 1.000
#> SRR1201744 2 0.000 0.997 0.000 1.000
#> SRR1201749 2 0.000 0.997 0.000 1.000
#> SRR1201750 2 0.000 0.997 0.000 1.000
#> SRR1201752 2 0.000 0.997 0.000 1.000
#> SRR1201751 2 0.000 0.997 0.000 1.000
#> SRR1201754 2 0.000 0.997 0.000 1.000
#> SRR1201753 2 0.000 0.997 0.000 1.000
#> SRR1201758 2 0.000 0.997 0.000 1.000
#> SRR1201759 2 0.000 0.997 0.000 1.000
#> SRR1201760 2 0.000 0.997 0.000 1.000
#> SRR1201761 2 0.000 0.997 0.000 1.000
#> SRR1201763 2 0.722 0.750 0.200 0.800
#> SRR1201762 1 0.000 0.999 1.000 0.000
#> SRR1201764 2 0.000 0.997 0.000 1.000
#> SRR1201766 2 0.000 0.997 0.000 1.000
#> SRR1201768 2 0.000 0.997 0.000 1.000
#> SRR1201769 2 0.000 0.997 0.000 1.000
#> SRR1201767 2 0.000 0.997 0.000 1.000
#> SRR1201770 2 0.000 0.997 0.000 1.000
#> SRR1201771 2 0.000 0.997 0.000 1.000
#> SRR1201772 2 0.000 0.997 0.000 1.000
#> SRR1201773 2 0.000 0.997 0.000 1.000
#> SRR1201774 2 0.000 0.997 0.000 1.000
#> SRR1201786 2 0.000 0.997 0.000 1.000
#> SRR1201784 2 0.000 0.997 0.000 1.000
#> SRR1201785 2 0.000 0.997 0.000 1.000
#> SRR1201778 2 0.000 0.997 0.000 1.000
#> SRR1201779 2 0.000 0.997 0.000 1.000
#> SRR1201781 2 0.000 0.997 0.000 1.000
#> SRR1201780 2 0.000 0.997 0.000 1.000
#> SRR1201783 2 0.000 0.997 0.000 1.000
#> SRR1201782 2 0.000 0.997 0.000 1.000
#> SRR1201798 2 0.000 0.997 0.000 1.000
#> SRR1201797 2 0.000 0.997 0.000 1.000
#> SRR1201796 2 0.000 0.997 0.000 1.000
#> SRR1201795 2 0.000 0.997 0.000 1.000
#> SRR1201799 2 0.000 0.997 0.000 1.000
#> SRR1201794 2 0.000 0.997 0.000 1.000
#> SRR1201793 2 0.000 0.997 0.000 1.000
#> SRR1201792 2 0.000 0.997 0.000 1.000
#> SRR1201791 2 0.000 0.997 0.000 1.000
#> SRR1201807 2 0.000 0.997 0.000 1.000
#> SRR1201808 2 0.000 0.997 0.000 1.000
#> SRR1201803 2 0.000 0.997 0.000 1.000
#> SRR1201804 2 0.000 0.997 0.000 1.000
#> SRR1201805 2 0.000 0.997 0.000 1.000
#> SRR1201806 2 0.000 0.997 0.000 1.000
#> SRR1201801 2 0.000 0.997 0.000 1.000
#> SRR1201802 2 0.000 0.997 0.000 1.000
#> SRR1201800 2 0.000 0.997 0.000 1.000
#> SRR1201814 2 0.000 0.997 0.000 1.000
#> SRR1201816 2 0.000 0.997 0.000 1.000
#> SRR1201815 2 0.000 0.997 0.000 1.000
#> SRR1201819 2 0.000 0.997 0.000 1.000
#> SRR1201820 2 0.000 0.997 0.000 1.000
#> SRR1201813 2 0.000 0.997 0.000 1.000
#> SRR1201817 2 0.000 0.997 0.000 1.000
#> SRR1201818 2 0.000 0.997 0.000 1.000
#> SRR1201825 2 0.000 0.997 0.000 1.000
#> SRR1201827 2 0.000 0.997 0.000 1.000
#> SRR1201828 2 0.000 0.997 0.000 1.000
#> SRR1201826 2 0.000 0.997 0.000 1.000
#> SRR1201829 2 0.000 0.997 0.000 1.000
#> SRR1201830 2 0.000 0.997 0.000 1.000
#> SRR1201831 2 0.000 0.997 0.000 1.000
#> SRR1201832 2 0.000 0.997 0.000 1.000
#> SRR1201833 2 0.000 0.997 0.000 1.000
#> SRR1201865 2 0.000 0.997 0.000 1.000
#> SRR1201866 2 0.000 0.997 0.000 1.000
#> SRR1201867 2 0.000 0.997 0.000 1.000
#> SRR1201861 2 0.000 0.997 0.000 1.000
#> SRR1201862 2 0.000 0.997 0.000 1.000
#> SRR1201863 2 0.000 0.997 0.000 1.000
#> SRR1201859 2 0.000 0.997 0.000 1.000
#> SRR1201864 2 0.000 0.997 0.000 1.000
#> SRR1201860 2 0.000 0.997 0.000 1.000
#> SRR1201873 2 0.000 0.997 0.000 1.000
#> SRR1201871 2 0.000 0.997 0.000 1.000
#> SRR1201872 2 0.000 0.997 0.000 1.000
#> SRR1201980 2 0.000 0.997 0.000 1.000
#> SRR1201979 2 0.000 0.997 0.000 1.000
#> SRR1201982 2 0.000 0.997 0.000 1.000
#> SRR1201981 2 0.000 0.997 0.000 1.000
#> SRR1201998 2 0.000 0.997 0.000 1.000
#> SRR1201996 2 0.000 0.997 0.000 1.000
#> SRR1201997 2 0.000 0.997 0.000 1.000
#> SRR1202005 2 0.000 0.997 0.000 1.000
#> SRR1202006 2 0.000 0.997 0.000 1.000
#> SRR1202088 2 0.000 0.997 0.000 1.000
#> SRR1202087 2 0.000 0.997 0.000 1.000
#> SRR1202093 2 0.000 0.997 0.000 1.000
#> SRR1202092 2 0.000 0.997 0.000 1.000
#> SRR1202288 2 0.000 0.997 0.000 1.000
#> SRR1202289 2 0.000 0.997 0.000 1.000
#> SRR1202299 2 0.000 0.997 0.000 1.000
#> SRR1202298 2 0.000 0.997 0.000 1.000
#> SRR1202303 1 0.000 0.999 1.000 0.000
#> SRR1202372 2 0.000 0.997 0.000 1.000
#> SRR1202371 2 0.000 0.997 0.000 1.000
#> SRR1202563 2 0.000 0.997 0.000 1.000
#> SRR1202565 2 0.000 0.997 0.000 1.000
#> SRR1202564 2 0.000 0.997 0.000 1.000
#> SRR1202649 2 0.000 0.997 0.000 1.000
#> SRR1202650 2 0.000 0.997 0.000 1.000
#> SRR1202651 2 0.000 0.997 0.000 1.000
#> SRR1202843 1 0.000 0.999 1.000 0.000
#> SRR1202844 1 0.000 0.999 1.000 0.000
#> SRR1202845 2 0.000 0.997 0.000 1.000
#> SRR1202847 2 0.000 0.997 0.000 1.000
#> SRR1202846 2 0.000 0.997 0.000 1.000
#> SRR1202945 1 0.000 0.999 1.000 0.000
#> SRR1202949 1 0.000 0.999 1.000 0.000
#> SRR1202977 1 0.000 0.999 1.000 0.000
#> SRR1202978 1 0.000 0.999 1.000 0.000
#> SRR1202979 1 0.000 0.999 1.000 0.000
#> SRR1202990 1 0.000 0.999 1.000 0.000
#> SRR1202999 1 0.000 0.999 1.000 0.000
#> SRR1203005 1 0.000 0.999 1.000 0.000
#> SRR1203006 1 0.000 0.999 1.000 0.000
#> SRR1203007 1 0.000 0.999 1.000 0.000
#> SRR1203009 1 0.000 0.999 1.000 0.000
#> SRR1203008 1 0.000 0.999 1.000 0.000
#> SRR1203010 1 0.000 0.999 1.000 0.000
#> SRR1203011 1 0.000 0.999 1.000 0.000
#> SRR1203025 1 0.000 0.999 1.000 0.000
#> SRR1203026 1 0.000 0.999 1.000 0.000
#> SRR1203027 1 0.000 0.999 1.000 0.000
#> SRR1203061 1 0.000 0.999 1.000 0.000
#> SRR1203089 1 0.000 0.999 1.000 0.000
#> SRR1203125 1 0.000 0.999 1.000 0.000
#> SRR1203128 1 0.000 0.999 1.000 0.000
#> SRR1203129 1 0.000 0.999 1.000 0.000
#> SRR1203130 1 0.000 0.999 1.000 0.000
#> SRR1203132 2 0.000 0.997 0.000 1.000
#> SRR1203131 2 0.000 0.997 0.000 1.000
#> SRR1203133 1 0.000 0.999 1.000 0.000
#> SRR1203138 1 0.000 0.999 1.000 0.000
#> SRR1203760 1 0.000 0.999 1.000 0.000
#> SRR1203761 1 0.000 0.999 1.000 0.000
#> SRR1203770 1 0.000 0.999 1.000 0.000
#> SRR1203771 1 0.000 0.999 1.000 0.000
#> SRR1203772 1 0.000 0.999 1.000 0.000
#> SRR1203773 1 0.000 0.999 1.000 0.000
#> SRR1203774 1 0.000 0.999 1.000 0.000
#> SRR1203775 1 0.000 0.999 1.000 0.000
#> SRR1203800 1 0.000 0.999 1.000 0.000
#> SRR1203801 1 0.000 0.999 1.000 0.000
#> SRR1203802 1 0.000 0.999 1.000 0.000
#> SRR1203803 1 0.000 0.999 1.000 0.000
#> SRR1203804 1 0.000 0.999 1.000 0.000
#> SRR1203805 1 0.000 0.999 1.000 0.000
#> SRR1203806 1 0.000 0.999 1.000 0.000
#> SRR1203807 1 0.000 0.999 1.000 0.000
#> SRR1203808 1 0.000 0.999 1.000 0.000
#> SRR1203811 1 0.000 0.999 1.000 0.000
#> SRR1203812 1 0.000 0.999 1.000 0.000
#> SRR1203813 1 0.000 0.999 1.000 0.000
#> SRR1203814 1 0.000 0.999 1.000 0.000
#> SRR1203815 1 0.000 0.999 1.000 0.000
#> SRR1203816 1 0.000 0.999 1.000 0.000
#> SRR1203817 1 0.000 0.999 1.000 0.000
#> SRR1203818 1 0.000 0.999 1.000 0.000
#> SRR1203819 1 0.000 0.999 1.000 0.000
#> SRR1203822 1 0.000 0.999 1.000 0.000
#> SRR1203823 1 0.000 0.999 1.000 0.000
#> SRR1203824 1 0.000 0.999 1.000 0.000
#> SRR1203825 1 0.000 0.999 1.000 0.000
#> SRR1203826 1 0.000 0.999 1.000 0.000
#> SRR1203827 1 0.278 0.949 0.952 0.048
#> SRR1203828 1 0.000 0.999 1.000 0.000
#> SRR1203829 1 0.000 0.999 1.000 0.000
#> SRR1203830 1 0.000 0.999 1.000 0.000
#> SRR1203831 1 0.000 0.999 1.000 0.000
#> SRR1203832 1 0.000 0.999 1.000 0.000
#> SRR1203833 1 0.000 0.999 1.000 0.000
#> SRR1203834 1 0.000 0.999 1.000 0.000
#> SRR1203835 1 0.000 0.999 1.000 0.000
#> SRR1203836 1 0.000 0.999 1.000 0.000
#> SRR1203837 1 0.000 0.999 1.000 0.000
#> SRR1203838 1 0.000 0.999 1.000 0.000
#> SRR1203839 1 0.000 0.999 1.000 0.000
#> SRR1203842 1 0.000 0.999 1.000 0.000
#> SRR1203843 1 0.000 0.999 1.000 0.000
#> SRR1203845 2 0.000 0.997 0.000 1.000
#> SRR1203844 2 0.000 0.997 0.000 1.000
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201590 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201593 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201592 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201617 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201616 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201619 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201618 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201620 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201621 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201623 2 0.5291 0.660 0.000 0.732 0.268
#> SRR1201622 2 0.5591 0.595 0.000 0.696 0.304
#> SRR1201624 3 0.0000 0.857 0.000 0.000 1.000
#> SRR1201625 3 0.2356 0.939 0.000 0.072 0.928
#> SRR1201626 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1201627 1 0.4555 0.755 0.800 0.000 0.200
#> SRR1201628 2 0.2448 0.909 0.000 0.924 0.076
#> SRR1201629 2 0.1753 0.930 0.000 0.952 0.048
#> SRR1201630 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201631 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201641 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201640 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201643 2 0.1163 0.941 0.000 0.972 0.028
#> SRR1201644 2 0.1031 0.943 0.000 0.976 0.024
#> SRR1201661 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201662 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201663 3 0.3116 0.962 0.000 0.108 0.892
#> SRR1201664 3 0.3116 0.962 0.000 0.108 0.892
#> SRR1201665 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201666 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201667 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201668 3 0.3116 0.962 0.000 0.108 0.892
#> SRR1201670 3 0.3116 0.962 0.000 0.108 0.892
#> SRR1201669 3 0.3116 0.962 0.000 0.108 0.892
#> SRR1201673 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201672 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201671 2 0.0592 0.948 0.000 0.988 0.012
#> SRR1201677 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201676 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201675 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201674 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201678 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201682 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201683 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201680 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201681 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201679 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201686 3 0.3116 0.962 0.000 0.108 0.892
#> SRR1201687 3 0.3116 0.962 0.000 0.108 0.892
#> SRR1201688 3 0.3116 0.962 0.000 0.108 0.892
#> SRR1201689 3 0.3116 0.962 0.000 0.108 0.892
#> SRR1201685 3 0.2625 0.950 0.000 0.084 0.916
#> SRR1201692 2 0.1411 0.937 0.000 0.964 0.036
#> SRR1201691 2 0.1411 0.937 0.000 0.964 0.036
#> SRR1201690 2 0.1860 0.927 0.000 0.948 0.052
#> SRR1201696 2 0.1411 0.937 0.000 0.964 0.036
#> SRR1201695 2 0.1411 0.937 0.000 0.964 0.036
#> SRR1201694 2 0.1411 0.937 0.000 0.964 0.036
#> SRR1201693 2 0.1411 0.937 0.000 0.964 0.036
#> SRR1201697 2 0.1411 0.937 0.000 0.964 0.036
#> SRR1201698 2 0.1411 0.937 0.000 0.964 0.036
#> SRR1201700 2 0.2625 0.902 0.000 0.916 0.084
#> SRR1201708 2 0.2448 0.909 0.000 0.924 0.076
#> SRR1201707 2 0.2448 0.909 0.000 0.924 0.076
#> SRR1201706 2 0.2448 0.909 0.000 0.924 0.076
#> SRR1201702 2 0.2448 0.909 0.000 0.924 0.076
#> SRR1201705 2 0.2448 0.909 0.000 0.924 0.076
#> SRR1201701 2 0.2448 0.909 0.000 0.924 0.076
#> SRR1201704 2 0.2448 0.909 0.000 0.924 0.076
#> SRR1201703 2 0.2448 0.909 0.000 0.924 0.076
#> SRR1201716 2 0.5560 0.603 0.000 0.700 0.300
#> SRR1201715 2 0.5560 0.603 0.000 0.700 0.300
#> SRR1201717 2 0.5560 0.603 0.000 0.700 0.300
#> SRR1201712 2 0.5560 0.603 0.000 0.700 0.300
#> SRR1201709 2 0.5560 0.603 0.000 0.700 0.300
#> SRR1201711 2 0.5560 0.603 0.000 0.700 0.300
#> SRR1201714 2 0.5560 0.603 0.000 0.700 0.300
#> SRR1201713 2 0.5560 0.603 0.000 0.700 0.300
#> SRR1201710 2 0.5560 0.603 0.000 0.700 0.300
#> SRR1201719 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201718 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201721 2 0.1643 0.932 0.000 0.956 0.044
#> SRR1201720 2 0.2448 0.909 0.000 0.924 0.076
#> SRR1201723 3 0.3116 0.962 0.000 0.108 0.892
#> SRR1201722 3 0.3116 0.962 0.000 0.108 0.892
#> SRR1201725 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201724 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201726 2 0.5560 0.603 0.000 0.700 0.300
#> SRR1201727 2 0.5363 0.646 0.000 0.724 0.276
#> SRR1201731 2 0.1411 0.937 0.000 0.964 0.036
#> SRR1201730 2 0.1529 0.935 0.000 0.960 0.040
#> SRR1201734 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201733 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201736 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201737 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201739 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201738 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201742 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201743 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201745 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201744 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201749 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201750 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201752 2 0.1411 0.937 0.000 0.964 0.036
#> SRR1201751 2 0.1753 0.930 0.000 0.952 0.048
#> SRR1201754 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201753 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201758 3 0.0892 0.883 0.000 0.020 0.980
#> SRR1201759 3 0.2625 0.950 0.000 0.084 0.916
#> SRR1201760 2 0.2448 0.909 0.000 0.924 0.076
#> SRR1201761 2 0.2356 0.913 0.000 0.928 0.072
#> SRR1201763 3 0.2878 0.792 0.096 0.000 0.904
#> SRR1201762 1 0.0424 0.987 0.992 0.000 0.008
#> SRR1201764 2 0.1031 0.943 0.000 0.976 0.024
#> SRR1201766 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201768 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201769 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201767 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201770 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201771 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201772 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201773 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201774 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201786 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201784 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201785 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201778 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201779 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201781 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201780 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201783 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201782 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201798 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201797 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201796 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201795 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201799 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201794 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201793 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201792 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201791 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201807 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201808 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201803 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201804 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201805 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201806 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201801 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201802 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201800 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201814 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201816 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201815 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201819 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201820 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201813 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201817 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201818 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201825 2 0.5706 0.561 0.000 0.680 0.320
#> SRR1201827 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201828 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201826 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201829 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201830 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201831 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201832 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201833 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201865 2 0.2356 0.913 0.000 0.928 0.072
#> SRR1201866 2 0.2356 0.913 0.000 0.928 0.072
#> SRR1201867 2 0.2356 0.913 0.000 0.928 0.072
#> SRR1201861 2 0.2356 0.913 0.000 0.928 0.072
#> SRR1201862 2 0.2356 0.913 0.000 0.928 0.072
#> SRR1201863 2 0.2356 0.913 0.000 0.928 0.072
#> SRR1201859 2 0.4750 0.743 0.000 0.784 0.216
#> SRR1201864 2 0.2356 0.913 0.000 0.928 0.072
#> SRR1201860 2 0.2356 0.913 0.000 0.928 0.072
#> SRR1201873 2 0.5497 0.618 0.000 0.708 0.292
#> SRR1201871 2 0.5621 0.587 0.000 0.692 0.308
#> SRR1201872 2 0.5497 0.618 0.000 0.708 0.292
#> SRR1201980 2 0.1411 0.937 0.000 0.964 0.036
#> SRR1201979 2 0.1964 0.924 0.000 0.944 0.056
#> SRR1201982 2 0.0747 0.947 0.000 0.984 0.016
#> SRR1201981 2 0.1411 0.937 0.000 0.964 0.036
#> SRR1201998 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1201996 2 0.0592 0.948 0.000 0.988 0.012
#> SRR1201997 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1202005 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1202006 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1202088 2 0.2165 0.919 0.000 0.936 0.064
#> SRR1202087 2 0.4796 0.738 0.000 0.780 0.220
#> SRR1202093 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1202092 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1202288 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1202289 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1202299 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1202298 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1202303 1 0.2711 0.904 0.912 0.000 0.088
#> SRR1202372 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1202371 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1202563 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1202565 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1202564 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1202649 2 0.0424 0.950 0.000 0.992 0.008
#> SRR1202650 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1202651 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1202843 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1202844 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1202845 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1202847 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1202846 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1202945 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1202949 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1202977 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1202978 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1202979 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1202990 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1202999 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203005 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203006 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203007 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203009 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203008 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203010 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203011 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203025 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203026 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203027 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203061 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203089 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203125 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203128 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203129 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203130 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203132 2 0.1411 0.937 0.000 0.964 0.036
#> SRR1203131 2 0.1753 0.930 0.000 0.952 0.048
#> SRR1203133 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203138 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203760 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203761 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203770 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203771 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203772 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203773 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203774 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203775 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203800 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203801 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203802 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203803 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203804 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203805 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203806 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203807 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203808 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203811 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203812 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203813 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203814 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203815 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203816 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203817 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203818 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203819 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203822 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203823 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203824 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203825 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203826 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203827 1 0.4346 0.800 0.816 0.000 0.184
#> SRR1203828 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203829 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203830 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203831 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203832 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203833 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203834 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203835 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203836 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203837 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203838 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203839 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203842 1 0.1411 0.963 0.964 0.000 0.036
#> SRR1203843 1 0.0000 0.993 1.000 0.000 0.000
#> SRR1203845 2 0.0000 0.954 0.000 1.000 0.000
#> SRR1203844 2 0.0000 0.954 0.000 1.000 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201590 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201593 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201592 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201617 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201616 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201619 2 0.0779 0.8187 0.000 0.980 0.004 0.016
#> SRR1201618 2 0.5825 0.5601 0.000 0.664 0.068 0.268
#> SRR1201620 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201621 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201623 3 0.5355 0.8093 0.000 0.020 0.620 0.360
#> SRR1201622 3 0.5143 0.8005 0.000 0.012 0.628 0.360
#> SRR1201624 4 0.4761 0.5990 0.000 0.000 0.372 0.628
#> SRR1201625 3 0.2216 0.0839 0.000 0.000 0.908 0.092
#> SRR1201626 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1201627 1 0.5254 0.5908 0.672 0.000 0.028 0.300
#> SRR1201628 3 0.5869 0.8195 0.000 0.044 0.596 0.360
#> SRR1201629 3 0.6083 0.8170 0.000 0.056 0.584 0.360
#> SRR1201630 2 0.5289 0.5303 0.000 0.636 0.020 0.344
#> SRR1201631 2 0.4978 0.5690 0.000 0.664 0.012 0.324
#> SRR1201641 2 0.5237 0.5176 0.000 0.628 0.016 0.356
#> SRR1201640 2 0.5630 0.4829 0.000 0.608 0.032 0.360
#> SRR1201643 3 0.7277 0.7259 0.000 0.156 0.484 0.360
#> SRR1201644 3 0.7371 0.7086 0.000 0.168 0.472 0.360
#> SRR1201661 2 0.5213 0.5530 0.000 0.652 0.020 0.328
#> SRR1201662 2 0.4567 0.6418 0.000 0.740 0.016 0.244
#> SRR1201663 3 0.0188 0.2789 0.000 0.000 0.996 0.004
#> SRR1201664 3 0.0000 0.2861 0.000 0.000 1.000 0.000
#> SRR1201665 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201666 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201667 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201668 3 0.0188 0.2789 0.000 0.000 0.996 0.004
#> SRR1201670 3 0.0000 0.2861 0.000 0.000 1.000 0.000
#> SRR1201669 3 0.0000 0.2861 0.000 0.000 1.000 0.000
#> SRR1201673 2 0.6837 0.3229 0.000 0.544 0.116 0.340
#> SRR1201672 2 0.6837 0.3229 0.000 0.544 0.116 0.340
#> SRR1201671 4 0.7917 -0.5153 0.000 0.344 0.312 0.344
#> SRR1201677 2 0.6837 0.3229 0.000 0.544 0.116 0.340
#> SRR1201676 2 0.6837 0.3229 0.000 0.544 0.116 0.340
#> SRR1201675 2 0.6837 0.3229 0.000 0.544 0.116 0.340
#> SRR1201674 2 0.6837 0.3229 0.000 0.544 0.116 0.340
#> SRR1201678 2 0.6837 0.3229 0.000 0.544 0.116 0.340
#> SRR1201682 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201683 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201680 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201681 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201679 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201686 3 0.0188 0.2789 0.000 0.000 0.996 0.004
#> SRR1201687 3 0.0188 0.2789 0.000 0.000 0.996 0.004
#> SRR1201688 3 0.0188 0.2789 0.000 0.000 0.996 0.004
#> SRR1201689 3 0.0188 0.2789 0.000 0.000 0.996 0.004
#> SRR1201685 3 0.1940 0.1234 0.000 0.000 0.924 0.076
#> SRR1201692 3 0.7310 0.7215 0.000 0.160 0.480 0.360
#> SRR1201691 3 0.7310 0.7215 0.000 0.160 0.480 0.360
#> SRR1201690 3 0.6396 0.8042 0.000 0.076 0.564 0.360
#> SRR1201696 3 0.7310 0.7215 0.000 0.160 0.480 0.360
#> SRR1201695 3 0.7310 0.7215 0.000 0.160 0.480 0.360
#> SRR1201694 3 0.7310 0.7215 0.000 0.160 0.480 0.360
#> SRR1201693 3 0.7310 0.7215 0.000 0.160 0.480 0.360
#> SRR1201697 3 0.7310 0.7215 0.000 0.160 0.480 0.360
#> SRR1201698 3 0.7310 0.7215 0.000 0.160 0.480 0.360
#> SRR1201700 3 0.5869 0.8195 0.000 0.044 0.596 0.360
#> SRR1201708 3 0.5869 0.8195 0.000 0.044 0.596 0.360
#> SRR1201707 3 0.5869 0.8195 0.000 0.044 0.596 0.360
#> SRR1201706 3 0.5869 0.8195 0.000 0.044 0.596 0.360
#> SRR1201702 3 0.5869 0.8195 0.000 0.044 0.596 0.360
#> SRR1201705 3 0.5869 0.8195 0.000 0.044 0.596 0.360
#> SRR1201701 3 0.5869 0.8195 0.000 0.044 0.596 0.360
#> SRR1201704 3 0.5869 0.8195 0.000 0.044 0.596 0.360
#> SRR1201703 3 0.5869 0.8195 0.000 0.044 0.596 0.360
#> SRR1201716 3 0.5355 0.8093 0.000 0.020 0.620 0.360
#> SRR1201715 3 0.5355 0.8093 0.000 0.020 0.620 0.360
#> SRR1201717 3 0.5355 0.8093 0.000 0.020 0.620 0.360
#> SRR1201712 3 0.5355 0.8093 0.000 0.020 0.620 0.360
#> SRR1201709 3 0.5253 0.8051 0.000 0.016 0.624 0.360
#> SRR1201711 3 0.5355 0.8093 0.000 0.020 0.620 0.360
#> SRR1201714 3 0.5355 0.8093 0.000 0.020 0.620 0.360
#> SRR1201713 3 0.5355 0.8093 0.000 0.020 0.620 0.360
#> SRR1201710 3 0.5355 0.8093 0.000 0.020 0.620 0.360
#> SRR1201719 2 0.4978 0.5690 0.000 0.664 0.012 0.324
#> SRR1201718 2 0.5252 0.5419 0.000 0.644 0.020 0.336
#> SRR1201721 3 0.6083 0.8170 0.000 0.056 0.584 0.360
#> SRR1201720 3 0.5869 0.8195 0.000 0.044 0.596 0.360
#> SRR1201723 3 0.4134 0.6878 0.000 0.000 0.740 0.260
#> SRR1201722 3 0.0000 0.2861 0.000 0.000 1.000 0.000
#> SRR1201725 2 0.5495 0.5109 0.000 0.624 0.028 0.348
#> SRR1201724 2 0.6665 0.3327 0.000 0.544 0.096 0.360
#> SRR1201726 3 0.5253 0.8051 0.000 0.016 0.624 0.360
#> SRR1201727 3 0.5355 0.8093 0.000 0.020 0.620 0.360
#> SRR1201731 3 0.7139 0.7436 0.000 0.140 0.500 0.360
#> SRR1201730 3 0.7101 0.7479 0.000 0.136 0.504 0.360
#> SRR1201734 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201733 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201736 2 0.0524 0.8220 0.000 0.988 0.008 0.004
#> SRR1201737 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201739 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201738 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201742 2 0.5839 0.5403 0.000 0.648 0.060 0.292
#> SRR1201743 2 0.3725 0.6986 0.000 0.812 0.008 0.180
#> SRR1201745 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201744 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201749 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201750 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201752 3 0.7277 0.7263 0.000 0.156 0.484 0.360
#> SRR1201751 3 0.6508 0.7977 0.000 0.084 0.556 0.360
#> SRR1201754 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201753 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201758 4 0.4989 0.5658 0.000 0.000 0.472 0.528
#> SRR1201759 3 0.2149 0.0939 0.000 0.000 0.912 0.088
#> SRR1201760 3 0.5869 0.8195 0.000 0.044 0.596 0.360
#> SRR1201761 3 0.5869 0.8195 0.000 0.044 0.596 0.360
#> SRR1201763 4 0.5954 0.5924 0.052 0.000 0.344 0.604
#> SRR1201762 1 0.0592 0.9740 0.984 0.000 0.000 0.016
#> SRR1201764 3 0.7870 0.4943 0.000 0.276 0.364 0.360
#> SRR1201766 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201768 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201769 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201767 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201770 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201771 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201772 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201773 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201774 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201786 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201784 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201785 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201778 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201779 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201781 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201780 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201783 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201782 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201798 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201797 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201796 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201795 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201799 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201794 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201793 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201792 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201791 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201807 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201808 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201803 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201804 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201805 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201806 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201801 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201802 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201800 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201814 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201816 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201815 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201819 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201820 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201813 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201817 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201818 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1201825 3 0.4889 0.7906 0.000 0.004 0.636 0.360
#> SRR1201827 2 0.5713 0.4749 0.000 0.604 0.036 0.360
#> SRR1201828 2 0.5713 0.4749 0.000 0.604 0.036 0.360
#> SRR1201826 2 0.7534 -0.0147 0.000 0.448 0.192 0.360
#> SRR1201829 2 0.5713 0.4749 0.000 0.604 0.036 0.360
#> SRR1201830 2 0.5713 0.4749 0.000 0.604 0.036 0.360
#> SRR1201831 2 0.5713 0.4749 0.000 0.604 0.036 0.360
#> SRR1201832 2 0.5713 0.4749 0.000 0.604 0.036 0.360
#> SRR1201833 2 0.5713 0.4749 0.000 0.604 0.036 0.360
#> SRR1201865 3 0.6083 0.8173 0.000 0.056 0.584 0.360
#> SRR1201866 3 0.6083 0.8173 0.000 0.056 0.584 0.360
#> SRR1201867 3 0.6083 0.8173 0.000 0.056 0.584 0.360
#> SRR1201861 3 0.6083 0.8173 0.000 0.056 0.584 0.360
#> SRR1201862 3 0.6083 0.8173 0.000 0.056 0.584 0.360
#> SRR1201863 3 0.6083 0.8173 0.000 0.056 0.584 0.360
#> SRR1201859 3 0.5543 0.8132 0.000 0.028 0.612 0.360
#> SRR1201864 3 0.6083 0.8173 0.000 0.056 0.584 0.360
#> SRR1201860 3 0.6083 0.8173 0.000 0.056 0.584 0.360
#> SRR1201873 3 0.5355 0.8093 0.000 0.020 0.620 0.360
#> SRR1201871 3 0.5355 0.8093 0.000 0.020 0.620 0.360
#> SRR1201872 3 0.5355 0.8093 0.000 0.020 0.620 0.360
#> SRR1201980 3 0.7310 0.7215 0.000 0.160 0.480 0.360
#> SRR1201979 3 0.6396 0.8042 0.000 0.076 0.564 0.360
#> SRR1201982 3 0.7534 0.6652 0.000 0.192 0.448 0.360
#> SRR1201981 3 0.7341 0.7150 0.000 0.164 0.476 0.360
#> SRR1201998 2 0.7139 0.1952 0.000 0.500 0.140 0.360
#> SRR1201996 2 0.7371 0.0847 0.000 0.472 0.168 0.360
#> SRR1201997 2 0.6014 0.4422 0.000 0.588 0.052 0.360
#> SRR1202005 2 0.3668 0.6978 0.000 0.808 0.004 0.188
#> SRR1202006 2 0.1211 0.8064 0.000 0.960 0.000 0.040
#> SRR1202088 3 0.7016 0.7371 0.000 0.140 0.540 0.320
#> SRR1202087 3 0.5807 0.8029 0.000 0.044 0.612 0.344
#> SRR1202093 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1202092 2 0.1305 0.8052 0.000 0.960 0.004 0.036
#> SRR1202288 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1202289 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1202299 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1202298 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1202303 1 0.5254 0.5908 0.672 0.000 0.028 0.300
#> SRR1202372 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1202371 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1202563 2 0.5110 0.5296 0.000 0.636 0.012 0.352
#> SRR1202565 2 0.4990 0.5349 0.000 0.640 0.008 0.352
#> SRR1202564 2 0.4990 0.5349 0.000 0.640 0.008 0.352
#> SRR1202649 2 0.7793 -0.2365 0.000 0.396 0.248 0.356
#> SRR1202650 2 0.5203 0.5282 0.000 0.636 0.016 0.348
#> SRR1202651 2 0.0000 0.8296 0.000 1.000 0.000 0.000
#> SRR1202843 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1202845 2 0.5453 0.5471 0.000 0.648 0.032 0.320
#> SRR1202847 2 0.4453 0.6454 0.000 0.744 0.012 0.244
#> SRR1202846 2 0.4453 0.6454 0.000 0.744 0.012 0.244
#> SRR1202945 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203132 3 0.7310 0.7215 0.000 0.160 0.480 0.360
#> SRR1203131 3 0.6214 0.8125 0.000 0.064 0.576 0.360
#> SRR1203133 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203827 1 0.4567 0.7017 0.740 0.000 0.016 0.244
#> SRR1203828 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203842 1 0.2469 0.8868 0.892 0.000 0.000 0.108
#> SRR1203843 1 0.0000 0.9872 1.000 0.000 0.000 0.000
#> SRR1203845 2 0.1211 0.8064 0.000 0.960 0.000 0.040
#> SRR1203844 2 0.1211 0.8064 0.000 0.960 0.000 0.040
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201590 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201593 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201592 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201617 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201616 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201619 2 0.0963 0.9244 0.000 0.964 0.036 0.000 0.000
#> SRR1201618 2 0.4210 0.1123 0.000 0.588 0.412 0.000 0.000
#> SRR1201620 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201621 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201623 3 0.3318 0.6945 0.000 0.008 0.800 0.000 0.192
#> SRR1201622 3 0.3928 0.5402 0.000 0.004 0.700 0.000 0.296
#> SRR1201624 4 0.3949 0.8119 0.000 0.000 0.000 0.668 0.332
#> SRR1201625 5 0.1571 0.8269 0.000 0.000 0.060 0.004 0.936
#> SRR1201626 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1201627 1 0.4430 0.1462 0.540 0.000 0.000 0.456 0.004
#> SRR1201628 3 0.0703 0.8284 0.000 0.024 0.976 0.000 0.000
#> SRR1201629 3 0.0963 0.8332 0.000 0.036 0.964 0.000 0.000
#> SRR1201630 3 0.3690 0.7214 0.000 0.224 0.764 0.012 0.000
#> SRR1201631 3 0.4063 0.6523 0.000 0.280 0.708 0.012 0.000
#> SRR1201641 3 0.2771 0.8050 0.000 0.128 0.860 0.012 0.000
#> SRR1201640 3 0.2624 0.8115 0.000 0.116 0.872 0.012 0.000
#> SRR1201643 3 0.1444 0.8332 0.000 0.040 0.948 0.012 0.000
#> SRR1201644 3 0.1444 0.8332 0.000 0.040 0.948 0.012 0.000
#> SRR1201661 3 0.4040 0.6572 0.000 0.276 0.712 0.012 0.000
#> SRR1201662 3 0.4582 0.4007 0.000 0.416 0.572 0.012 0.000
#> SRR1201663 5 0.2179 0.9142 0.000 0.000 0.112 0.000 0.888
#> SRR1201664 5 0.2230 0.9117 0.000 0.000 0.116 0.000 0.884
#> SRR1201665 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201666 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201667 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201668 5 0.2074 0.9117 0.000 0.000 0.104 0.000 0.896
#> SRR1201670 5 0.2230 0.9117 0.000 0.000 0.116 0.000 0.884
#> SRR1201669 5 0.2230 0.9117 0.000 0.000 0.116 0.000 0.884
#> SRR1201673 3 0.3612 0.6943 0.000 0.268 0.732 0.000 0.000
#> SRR1201672 3 0.3612 0.6943 0.000 0.268 0.732 0.000 0.000
#> SRR1201671 3 0.3177 0.7504 0.000 0.208 0.792 0.000 0.000
#> SRR1201677 3 0.3612 0.6943 0.000 0.268 0.732 0.000 0.000
#> SRR1201676 3 0.3612 0.6943 0.000 0.268 0.732 0.000 0.000
#> SRR1201675 3 0.3612 0.6943 0.000 0.268 0.732 0.000 0.000
#> SRR1201674 3 0.3612 0.6943 0.000 0.268 0.732 0.000 0.000
#> SRR1201678 3 0.3612 0.6943 0.000 0.268 0.732 0.000 0.000
#> SRR1201682 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201683 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201680 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201681 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201679 2 0.0162 0.9625 0.000 0.996 0.004 0.000 0.000
#> SRR1201686 5 0.2127 0.9160 0.000 0.000 0.108 0.000 0.892
#> SRR1201687 5 0.2127 0.9160 0.000 0.000 0.108 0.000 0.892
#> SRR1201688 5 0.2127 0.9160 0.000 0.000 0.108 0.000 0.892
#> SRR1201689 5 0.2127 0.9160 0.000 0.000 0.108 0.000 0.892
#> SRR1201685 5 0.1892 0.8731 0.000 0.000 0.080 0.004 0.916
#> SRR1201692 3 0.1043 0.8341 0.000 0.040 0.960 0.000 0.000
#> SRR1201691 3 0.1043 0.8341 0.000 0.040 0.960 0.000 0.000
#> SRR1201690 3 0.0963 0.8332 0.000 0.036 0.964 0.000 0.000
#> SRR1201696 3 0.1043 0.8341 0.000 0.040 0.960 0.000 0.000
#> SRR1201695 3 0.1043 0.8341 0.000 0.040 0.960 0.000 0.000
#> SRR1201694 3 0.1043 0.8341 0.000 0.040 0.960 0.000 0.000
#> SRR1201693 3 0.1043 0.8341 0.000 0.040 0.960 0.000 0.000
#> SRR1201697 3 0.1043 0.8341 0.000 0.040 0.960 0.000 0.000
#> SRR1201698 3 0.1043 0.8341 0.000 0.040 0.960 0.000 0.000
#> SRR1201700 3 0.0703 0.8284 0.000 0.024 0.976 0.000 0.000
#> SRR1201708 3 0.0703 0.8284 0.000 0.024 0.976 0.000 0.000
#> SRR1201707 3 0.0703 0.8284 0.000 0.024 0.976 0.000 0.000
#> SRR1201706 3 0.0703 0.8284 0.000 0.024 0.976 0.000 0.000
#> SRR1201702 3 0.0703 0.8284 0.000 0.024 0.976 0.000 0.000
#> SRR1201705 3 0.0703 0.8284 0.000 0.024 0.976 0.000 0.000
#> SRR1201701 3 0.0703 0.8284 0.000 0.024 0.976 0.000 0.000
#> SRR1201704 3 0.0703 0.8284 0.000 0.024 0.976 0.000 0.000
#> SRR1201703 3 0.0703 0.8284 0.000 0.024 0.976 0.000 0.000
#> SRR1201716 3 0.3318 0.6945 0.000 0.008 0.800 0.000 0.192
#> SRR1201715 3 0.3318 0.6945 0.000 0.008 0.800 0.000 0.192
#> SRR1201717 3 0.3318 0.6945 0.000 0.008 0.800 0.000 0.192
#> SRR1201712 3 0.3318 0.6945 0.000 0.008 0.800 0.000 0.192
#> SRR1201709 3 0.3266 0.6832 0.000 0.004 0.796 0.000 0.200
#> SRR1201711 3 0.3318 0.6945 0.000 0.008 0.800 0.000 0.192
#> SRR1201714 3 0.3318 0.6945 0.000 0.008 0.800 0.000 0.192
#> SRR1201713 3 0.3318 0.6945 0.000 0.008 0.800 0.000 0.192
#> SRR1201710 3 0.3318 0.6945 0.000 0.008 0.800 0.000 0.192
#> SRR1201719 3 0.4130 0.6356 0.000 0.292 0.696 0.012 0.000
#> SRR1201718 3 0.3596 0.7342 0.000 0.212 0.776 0.012 0.000
#> SRR1201721 3 0.1124 0.8334 0.000 0.036 0.960 0.004 0.000
#> SRR1201720 3 0.1168 0.8320 0.000 0.032 0.960 0.008 0.000
#> SRR1201723 5 0.3143 0.7009 0.000 0.000 0.204 0.000 0.796
#> SRR1201722 5 0.2230 0.9117 0.000 0.000 0.116 0.000 0.884
#> SRR1201725 3 0.3123 0.7823 0.000 0.160 0.828 0.012 0.000
#> SRR1201724 3 0.2361 0.8202 0.000 0.096 0.892 0.012 0.000
#> SRR1201726 3 0.3474 0.6934 0.000 0.008 0.796 0.004 0.192
#> SRR1201727 3 0.0960 0.8158 0.000 0.008 0.972 0.004 0.016
#> SRR1201731 3 0.1444 0.8332 0.000 0.040 0.948 0.012 0.000
#> SRR1201730 3 0.1444 0.8332 0.000 0.040 0.948 0.012 0.000
#> SRR1201734 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201733 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201736 2 0.0510 0.9489 0.000 0.984 0.016 0.000 0.000
#> SRR1201737 2 0.0162 0.9623 0.000 0.996 0.004 0.000 0.000
#> SRR1201739 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201738 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201742 3 0.4268 0.3888 0.000 0.444 0.556 0.000 0.000
#> SRR1201743 2 0.4114 0.2470 0.000 0.624 0.376 0.000 0.000
#> SRR1201745 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201744 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201749 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201750 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201752 3 0.1043 0.8341 0.000 0.040 0.960 0.000 0.000
#> SRR1201751 3 0.1043 0.8341 0.000 0.040 0.960 0.000 0.000
#> SRR1201754 2 0.0404 0.9539 0.000 0.988 0.012 0.000 0.000
#> SRR1201753 2 0.1502 0.8983 0.000 0.940 0.056 0.004 0.000
#> SRR1201758 5 0.3398 0.1736 0.000 0.000 0.004 0.216 0.780
#> SRR1201759 5 0.1831 0.8648 0.000 0.000 0.076 0.004 0.920
#> SRR1201760 3 0.0703 0.8284 0.000 0.024 0.976 0.000 0.000
#> SRR1201761 3 0.0703 0.8284 0.000 0.024 0.976 0.000 0.000
#> SRR1201763 4 0.4735 0.8204 0.044 0.000 0.000 0.672 0.284
#> SRR1201762 1 0.1341 0.9216 0.944 0.000 0.000 0.056 0.000
#> SRR1201764 3 0.1877 0.8304 0.000 0.064 0.924 0.012 0.000
#> SRR1201766 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201768 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201769 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201767 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201770 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201771 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201772 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201773 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201774 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201786 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201784 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201785 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201778 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201779 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201781 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201780 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201783 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201782 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201798 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201797 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201796 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201795 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201799 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201794 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201793 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201792 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201791 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201807 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201808 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201803 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201804 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201805 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201806 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201801 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201802 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201800 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201814 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201816 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201815 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201819 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201820 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201813 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201817 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201818 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1201825 3 0.3906 0.5510 0.000 0.004 0.704 0.000 0.292
#> SRR1201827 3 0.2377 0.8108 0.000 0.128 0.872 0.000 0.000
#> SRR1201828 3 0.2377 0.8108 0.000 0.128 0.872 0.000 0.000
#> SRR1201826 3 0.1908 0.8253 0.000 0.092 0.908 0.000 0.000
#> SRR1201829 3 0.2377 0.8108 0.000 0.128 0.872 0.000 0.000
#> SRR1201830 3 0.2377 0.8108 0.000 0.128 0.872 0.000 0.000
#> SRR1201831 3 0.2377 0.8108 0.000 0.128 0.872 0.000 0.000
#> SRR1201832 3 0.2377 0.8108 0.000 0.128 0.872 0.000 0.000
#> SRR1201833 3 0.2377 0.8108 0.000 0.128 0.872 0.000 0.000
#> SRR1201865 3 0.2850 0.7964 0.000 0.036 0.872 0.000 0.092
#> SRR1201866 3 0.2850 0.7964 0.000 0.036 0.872 0.000 0.092
#> SRR1201867 3 0.2850 0.7964 0.000 0.036 0.872 0.000 0.092
#> SRR1201861 3 0.2850 0.7964 0.000 0.036 0.872 0.000 0.092
#> SRR1201862 3 0.2850 0.7964 0.000 0.036 0.872 0.000 0.092
#> SRR1201863 3 0.2850 0.7964 0.000 0.036 0.872 0.000 0.092
#> SRR1201859 3 0.3343 0.7182 0.000 0.016 0.812 0.000 0.172
#> SRR1201864 3 0.2850 0.7964 0.000 0.036 0.872 0.000 0.092
#> SRR1201860 3 0.2850 0.7964 0.000 0.036 0.872 0.000 0.092
#> SRR1201873 3 0.3318 0.6945 0.000 0.008 0.800 0.000 0.192
#> SRR1201871 3 0.3455 0.6767 0.000 0.008 0.784 0.000 0.208
#> SRR1201872 3 0.3318 0.6945 0.000 0.008 0.800 0.000 0.192
#> SRR1201980 3 0.1043 0.8341 0.000 0.040 0.960 0.000 0.000
#> SRR1201979 3 0.0963 0.8332 0.000 0.036 0.964 0.000 0.000
#> SRR1201982 3 0.1444 0.8332 0.000 0.040 0.948 0.012 0.000
#> SRR1201981 3 0.1444 0.8332 0.000 0.040 0.948 0.012 0.000
#> SRR1201998 3 0.2069 0.8270 0.000 0.076 0.912 0.012 0.000
#> SRR1201996 3 0.2006 0.8285 0.000 0.072 0.916 0.012 0.000
#> SRR1201997 3 0.2416 0.8185 0.000 0.100 0.888 0.012 0.000
#> SRR1202005 3 0.4648 0.2560 0.000 0.464 0.524 0.012 0.000
#> SRR1202006 2 0.4402 0.3693 0.000 0.636 0.352 0.012 0.000
#> SRR1202088 3 0.4276 0.6468 0.000 0.256 0.716 0.000 0.028
#> SRR1202087 3 0.5263 0.6002 0.000 0.144 0.680 0.000 0.176
#> SRR1202093 2 0.0162 0.9623 0.000 0.996 0.004 0.000 0.000
#> SRR1202092 2 0.2561 0.7655 0.000 0.856 0.144 0.000 0.000
#> SRR1202288 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1202289 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1202299 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1202298 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1202303 1 0.4420 0.1726 0.548 0.000 0.000 0.448 0.004
#> SRR1202372 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1202371 2 0.0000 0.9667 0.000 1.000 0.000 0.000 0.000
#> SRR1202563 3 0.3969 0.6456 0.000 0.304 0.692 0.004 0.000
#> SRR1202565 3 0.3266 0.7622 0.000 0.200 0.796 0.004 0.000
#> SRR1202564 3 0.3300 0.7592 0.000 0.204 0.792 0.004 0.000
#> SRR1202649 3 0.2929 0.7799 0.000 0.180 0.820 0.000 0.000
#> SRR1202650 3 0.3579 0.7284 0.000 0.240 0.756 0.004 0.000
#> SRR1202651 2 0.1410 0.8959 0.000 0.940 0.060 0.000 0.000
#> SRR1202843 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1202845 3 0.4152 0.6239 0.000 0.296 0.692 0.012 0.000
#> SRR1202847 3 0.4597 0.3799 0.000 0.424 0.564 0.012 0.000
#> SRR1202846 3 0.4597 0.3799 0.000 0.424 0.564 0.012 0.000
#> SRR1202945 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.1444 0.8332 0.000 0.040 0.948 0.012 0.000
#> SRR1203131 3 0.1364 0.8325 0.000 0.036 0.952 0.012 0.000
#> SRR1203133 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203827 1 0.5175 0.0587 0.504 0.000 0.020 0.464 0.012
#> SRR1203828 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203842 1 0.4335 0.5888 0.708 0.000 0.020 0.268 0.004
#> SRR1203843 1 0.0000 0.9761 1.000 0.000 0.000 0.000 0.000
#> SRR1203845 2 0.4040 0.5537 0.000 0.712 0.276 0.012 0.000
#> SRR1203844 2 0.4288 0.4429 0.000 0.664 0.324 0.012 0.000
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 2 0.0000 0.9407 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201590 2 0.0000 0.9407 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201593 2 0.0000 0.9407 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201592 2 0.0000 0.9407 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201617 2 0.0000 0.9407 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201616 2 0.0000 0.9407 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201619 2 0.1856 0.8927 0.000 0.920 0.048 0.000 0.000 0.032
#> SRR1201618 2 0.4466 0.3684 0.000 0.620 0.336 0.000 0.000 0.044
#> SRR1201620 2 0.0632 0.9352 0.000 0.976 0.000 0.000 0.000 0.024
#> SRR1201621 2 0.0146 0.9404 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1201623 3 0.4214 0.5098 0.000 0.004 0.652 0.000 0.320 0.024
#> SRR1201622 3 0.4399 0.1839 0.000 0.000 0.516 0.000 0.460 0.024
#> SRR1201624 4 0.4802 -0.1253 0.000 0.000 0.000 0.540 0.056 0.404
#> SRR1201625 5 0.1088 0.8606 0.000 0.000 0.016 0.024 0.960 0.000
#> SRR1201626 1 0.0551 0.9690 0.984 0.000 0.004 0.004 0.000 0.008
#> SRR1201627 4 0.3971 -0.1155 0.448 0.000 0.004 0.548 0.000 0.000
#> SRR1201628 3 0.0837 0.7837 0.000 0.004 0.972 0.000 0.004 0.020
#> SRR1201629 3 0.0405 0.7839 0.000 0.004 0.988 0.000 0.000 0.008
#> SRR1201630 3 0.3558 0.7164 0.000 0.088 0.800 0.000 0.000 0.112
#> SRR1201631 3 0.3832 0.6981 0.000 0.104 0.776 0.000 0.000 0.120
#> SRR1201641 3 0.2680 0.7549 0.000 0.032 0.860 0.000 0.000 0.108
#> SRR1201640 3 0.2358 0.7593 0.000 0.016 0.876 0.000 0.000 0.108
#> SRR1201643 3 0.2006 0.7618 0.000 0.004 0.892 0.000 0.000 0.104
#> SRR1201644 3 0.2006 0.7618 0.000 0.004 0.892 0.000 0.000 0.104
#> SRR1201661 3 0.4074 0.6765 0.000 0.140 0.752 0.000 0.000 0.108
#> SRR1201662 3 0.4853 0.5395 0.000 0.248 0.644 0.000 0.000 0.108
#> SRR1201663 5 0.0632 0.8837 0.000 0.000 0.024 0.000 0.976 0.000
#> SRR1201664 5 0.0713 0.8816 0.000 0.000 0.028 0.000 0.972 0.000
#> SRR1201665 2 0.0632 0.9333 0.000 0.976 0.000 0.000 0.000 0.024
#> SRR1201666 2 0.0547 0.9348 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1201667 2 0.0547 0.9348 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1201668 5 0.0777 0.8814 0.000 0.000 0.024 0.000 0.972 0.004
#> SRR1201670 5 0.0713 0.8816 0.000 0.000 0.028 0.000 0.972 0.000
#> SRR1201669 5 0.0713 0.8816 0.000 0.000 0.028 0.000 0.972 0.000
#> SRR1201673 3 0.3720 0.6371 0.000 0.236 0.736 0.000 0.000 0.028
#> SRR1201672 3 0.3720 0.6371 0.000 0.236 0.736 0.000 0.000 0.028
#> SRR1201671 3 0.3529 0.6626 0.000 0.208 0.764 0.000 0.000 0.028
#> SRR1201677 3 0.3720 0.6371 0.000 0.236 0.736 0.000 0.000 0.028
#> SRR1201676 3 0.3720 0.6371 0.000 0.236 0.736 0.000 0.000 0.028
#> SRR1201675 3 0.3720 0.6371 0.000 0.236 0.736 0.000 0.000 0.028
#> SRR1201674 3 0.3720 0.6371 0.000 0.236 0.736 0.000 0.000 0.028
#> SRR1201678 3 0.3720 0.6371 0.000 0.236 0.736 0.000 0.000 0.028
#> SRR1201682 2 0.0632 0.9346 0.000 0.976 0.000 0.000 0.000 0.024
#> SRR1201683 2 0.0632 0.9346 0.000 0.976 0.000 0.000 0.000 0.024
#> SRR1201680 2 0.0632 0.9346 0.000 0.976 0.000 0.000 0.000 0.024
#> SRR1201681 2 0.0632 0.9346 0.000 0.976 0.000 0.000 0.000 0.024
#> SRR1201679 2 0.0891 0.9311 0.000 0.968 0.008 0.000 0.000 0.024
#> SRR1201686 5 0.0632 0.8837 0.000 0.000 0.024 0.000 0.976 0.000
#> SRR1201687 5 0.0632 0.8837 0.000 0.000 0.024 0.000 0.976 0.000
#> SRR1201688 5 0.0632 0.8837 0.000 0.000 0.024 0.000 0.976 0.000
#> SRR1201689 5 0.0632 0.8837 0.000 0.000 0.024 0.000 0.976 0.000
#> SRR1201685 5 0.2020 0.8317 0.000 0.000 0.020 0.020 0.920 0.040
#> SRR1201692 3 0.0291 0.7843 0.000 0.004 0.992 0.000 0.000 0.004
#> SRR1201691 3 0.0291 0.7843 0.000 0.004 0.992 0.000 0.000 0.004
#> SRR1201690 3 0.0146 0.7843 0.000 0.004 0.996 0.000 0.000 0.000
#> SRR1201696 3 0.0291 0.7843 0.000 0.004 0.992 0.000 0.000 0.004
#> SRR1201695 3 0.0291 0.7843 0.000 0.004 0.992 0.000 0.000 0.004
#> SRR1201694 3 0.0291 0.7843 0.000 0.004 0.992 0.000 0.000 0.004
#> SRR1201693 3 0.0291 0.7843 0.000 0.004 0.992 0.000 0.000 0.004
#> SRR1201697 3 0.0291 0.7843 0.000 0.004 0.992 0.000 0.000 0.004
#> SRR1201698 3 0.0291 0.7843 0.000 0.004 0.992 0.000 0.000 0.004
#> SRR1201700 3 0.0551 0.7838 0.000 0.004 0.984 0.000 0.004 0.008
#> SRR1201708 3 0.0551 0.7838 0.000 0.004 0.984 0.000 0.004 0.008
#> SRR1201707 3 0.0551 0.7838 0.000 0.004 0.984 0.000 0.004 0.008
#> SRR1201706 3 0.0551 0.7838 0.000 0.004 0.984 0.000 0.004 0.008
#> SRR1201702 3 0.0551 0.7838 0.000 0.004 0.984 0.000 0.004 0.008
#> SRR1201705 3 0.0551 0.7838 0.000 0.004 0.984 0.000 0.004 0.008
#> SRR1201701 3 0.0551 0.7838 0.000 0.004 0.984 0.000 0.004 0.008
#> SRR1201704 3 0.0551 0.7838 0.000 0.004 0.984 0.000 0.004 0.008
#> SRR1201703 3 0.0551 0.7838 0.000 0.004 0.984 0.000 0.004 0.008
#> SRR1201716 3 0.4138 0.5127 0.000 0.004 0.656 0.000 0.320 0.020
#> SRR1201715 3 0.4138 0.5127 0.000 0.004 0.656 0.000 0.320 0.020
#> SRR1201717 3 0.4138 0.5127 0.000 0.004 0.656 0.000 0.320 0.020
#> SRR1201712 3 0.4138 0.5127 0.000 0.004 0.656 0.000 0.320 0.020
#> SRR1201709 3 0.4170 0.4998 0.000 0.004 0.648 0.000 0.328 0.020
#> SRR1201711 3 0.4138 0.5127 0.000 0.004 0.656 0.000 0.320 0.020
#> SRR1201714 3 0.4138 0.5127 0.000 0.004 0.656 0.000 0.320 0.020
#> SRR1201713 3 0.4138 0.5127 0.000 0.004 0.656 0.000 0.320 0.020
#> SRR1201710 3 0.4138 0.5127 0.000 0.004 0.656 0.000 0.320 0.020
#> SRR1201719 3 0.4218 0.6588 0.000 0.156 0.736 0.000 0.000 0.108
#> SRR1201718 3 0.3792 0.7032 0.000 0.112 0.780 0.000 0.000 0.108
#> SRR1201721 3 0.1152 0.7796 0.000 0.004 0.952 0.000 0.000 0.044
#> SRR1201720 3 0.1219 0.7787 0.000 0.004 0.948 0.000 0.000 0.048
#> SRR1201723 5 0.1951 0.8049 0.000 0.000 0.076 0.000 0.908 0.016
#> SRR1201722 5 0.0632 0.8837 0.000 0.000 0.024 0.000 0.976 0.000
#> SRR1201725 3 0.3078 0.7431 0.000 0.056 0.836 0.000 0.000 0.108
#> SRR1201724 3 0.2358 0.7585 0.000 0.016 0.876 0.000 0.000 0.108
#> SRR1201726 3 0.4443 0.5279 0.000 0.000 0.648 0.000 0.300 0.052
#> SRR1201727 3 0.1760 0.7812 0.000 0.004 0.928 0.000 0.020 0.048
#> SRR1201731 3 0.2006 0.7618 0.000 0.004 0.892 0.000 0.000 0.104
#> SRR1201730 3 0.2006 0.7618 0.000 0.004 0.892 0.000 0.000 0.104
#> SRR1201734 2 0.0000 0.9407 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201733 2 0.0547 0.9353 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1201736 2 0.1168 0.9222 0.000 0.956 0.016 0.000 0.000 0.028
#> SRR1201737 2 0.0993 0.9286 0.000 0.964 0.012 0.000 0.000 0.024
#> SRR1201739 2 0.0547 0.9348 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1201738 2 0.0632 0.9333 0.000 0.976 0.000 0.000 0.000 0.024
#> SRR1201742 3 0.4494 0.3244 0.000 0.424 0.544 0.000 0.000 0.032
#> SRR1201743 2 0.4196 0.3843 0.000 0.640 0.332 0.000 0.000 0.028
#> SRR1201745 2 0.0146 0.9404 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1201744 2 0.0632 0.9358 0.000 0.976 0.000 0.000 0.000 0.024
#> SRR1201749 2 0.0865 0.9321 0.000 0.964 0.000 0.000 0.000 0.036
#> SRR1201750 2 0.0547 0.9413 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1201752 3 0.0717 0.7843 0.000 0.008 0.976 0.000 0.000 0.016
#> SRR1201751 3 0.0717 0.7843 0.000 0.008 0.976 0.000 0.000 0.016
#> SRR1201754 2 0.1074 0.9199 0.000 0.960 0.028 0.000 0.000 0.012
#> SRR1201753 2 0.3254 0.7581 0.000 0.820 0.124 0.000 0.000 0.056
#> SRR1201758 5 0.5702 0.2112 0.000 0.000 0.000 0.180 0.496 0.324
#> SRR1201759 5 0.1452 0.8580 0.000 0.000 0.020 0.020 0.948 0.012
#> SRR1201760 3 0.0653 0.7833 0.000 0.004 0.980 0.000 0.004 0.012
#> SRR1201761 3 0.0603 0.7838 0.000 0.004 0.980 0.000 0.000 0.016
#> SRR1201763 4 0.1918 -0.0134 0.008 0.000 0.000 0.904 0.088 0.000
#> SRR1201762 1 0.3494 0.6056 0.792 0.000 0.004 0.036 0.000 0.168
#> SRR1201764 3 0.2624 0.7537 0.000 0.020 0.856 0.000 0.000 0.124
#> SRR1201766 2 0.1007 0.9394 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201768 2 0.1007 0.9394 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201769 2 0.1007 0.9394 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201767 2 0.1007 0.9394 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201770 2 0.1007 0.9394 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201771 2 0.1007 0.9394 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201772 2 0.1007 0.9394 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201773 2 0.1007 0.9394 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201774 2 0.1007 0.9394 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201786 2 0.1007 0.9394 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201784 2 0.1007 0.9394 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201785 2 0.1007 0.9394 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201778 2 0.1007 0.9394 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201779 2 0.1007 0.9394 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201781 2 0.1007 0.9394 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201780 2 0.1007 0.9394 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201783 2 0.1007 0.9394 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201782 2 0.1007 0.9394 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201798 2 0.0000 0.9407 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201797 2 0.0000 0.9407 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201796 2 0.0000 0.9407 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201795 2 0.0000 0.9407 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201799 2 0.0000 0.9407 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201794 2 0.0000 0.9407 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201793 2 0.0000 0.9407 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201792 2 0.0000 0.9407 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201791 2 0.0146 0.9399 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1201807 2 0.1007 0.9401 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201808 2 0.1007 0.9401 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201803 2 0.1007 0.9401 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201804 2 0.1007 0.9401 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201805 2 0.1007 0.9401 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201806 2 0.1007 0.9401 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201801 2 0.1007 0.9401 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201802 2 0.1007 0.9401 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201800 2 0.1007 0.9401 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1201814 2 0.1075 0.9392 0.000 0.952 0.000 0.000 0.000 0.048
#> SRR1201816 2 0.1075 0.9392 0.000 0.952 0.000 0.000 0.000 0.048
#> SRR1201815 2 0.1075 0.9392 0.000 0.952 0.000 0.000 0.000 0.048
#> SRR1201819 2 0.1075 0.9392 0.000 0.952 0.000 0.000 0.000 0.048
#> SRR1201820 2 0.1075 0.9392 0.000 0.952 0.000 0.000 0.000 0.048
#> SRR1201813 2 0.1075 0.9392 0.000 0.952 0.000 0.000 0.000 0.048
#> SRR1201817 2 0.1075 0.9392 0.000 0.952 0.000 0.000 0.000 0.048
#> SRR1201818 2 0.1075 0.9392 0.000 0.952 0.000 0.000 0.000 0.048
#> SRR1201825 5 0.4779 -0.1218 0.000 0.004 0.468 0.000 0.488 0.040
#> SRR1201827 3 0.2088 0.7730 0.000 0.068 0.904 0.000 0.000 0.028
#> SRR1201828 3 0.2145 0.7713 0.000 0.072 0.900 0.000 0.000 0.028
#> SRR1201826 3 0.1572 0.7821 0.000 0.036 0.936 0.000 0.000 0.028
#> SRR1201829 3 0.2145 0.7713 0.000 0.072 0.900 0.000 0.000 0.028
#> SRR1201830 3 0.2145 0.7713 0.000 0.072 0.900 0.000 0.000 0.028
#> SRR1201831 3 0.2145 0.7713 0.000 0.072 0.900 0.000 0.000 0.028
#> SRR1201832 3 0.2145 0.7713 0.000 0.072 0.900 0.000 0.000 0.028
#> SRR1201833 3 0.2145 0.7713 0.000 0.072 0.900 0.000 0.000 0.028
#> SRR1201865 3 0.3819 0.6576 0.000 0.004 0.756 0.000 0.200 0.040
#> SRR1201866 3 0.3819 0.6576 0.000 0.004 0.756 0.000 0.200 0.040
#> SRR1201867 3 0.3819 0.6576 0.000 0.004 0.756 0.000 0.200 0.040
#> SRR1201861 3 0.3819 0.6576 0.000 0.004 0.756 0.000 0.200 0.040
#> SRR1201862 3 0.3819 0.6576 0.000 0.004 0.756 0.000 0.200 0.040
#> SRR1201863 3 0.3819 0.6576 0.000 0.004 0.756 0.000 0.200 0.040
#> SRR1201859 3 0.4427 0.5396 0.000 0.004 0.660 0.000 0.292 0.044
#> SRR1201864 3 0.3819 0.6576 0.000 0.004 0.756 0.000 0.200 0.040
#> SRR1201860 3 0.3819 0.6576 0.000 0.004 0.756 0.000 0.200 0.040
#> SRR1201873 3 0.4214 0.5098 0.000 0.004 0.652 0.000 0.320 0.024
#> SRR1201871 3 0.4423 0.4327 0.000 0.004 0.608 0.000 0.360 0.028
#> SRR1201872 3 0.4214 0.5098 0.000 0.004 0.652 0.000 0.320 0.024
#> SRR1201980 3 0.0291 0.7843 0.000 0.004 0.992 0.000 0.000 0.004
#> SRR1201979 3 0.0405 0.7844 0.000 0.004 0.988 0.000 0.000 0.008
#> SRR1201982 3 0.2006 0.7618 0.000 0.004 0.892 0.000 0.000 0.104
#> SRR1201981 3 0.2006 0.7618 0.000 0.004 0.892 0.000 0.000 0.104
#> SRR1201998 3 0.2053 0.7609 0.000 0.004 0.888 0.000 0.000 0.108
#> SRR1201996 3 0.2053 0.7609 0.000 0.004 0.888 0.000 0.000 0.108
#> SRR1201997 3 0.2165 0.7609 0.000 0.008 0.884 0.000 0.000 0.108
#> SRR1202005 3 0.4953 0.5132 0.000 0.268 0.624 0.000 0.000 0.108
#> SRR1202006 3 0.5360 0.1564 0.000 0.436 0.456 0.000 0.000 0.108
#> SRR1202088 3 0.5659 0.4835 0.000 0.260 0.596 0.000 0.112 0.032
#> SRR1202087 3 0.6179 0.3361 0.000 0.148 0.512 0.000 0.304 0.036
#> SRR1202093 2 0.0806 0.9310 0.000 0.972 0.008 0.000 0.000 0.020
#> SRR1202092 2 0.2558 0.8139 0.000 0.868 0.104 0.000 0.000 0.028
#> SRR1202288 2 0.0547 0.9353 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1202289 2 0.0000 0.9407 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1202299 2 0.1007 0.9401 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1202298 2 0.1007 0.9401 0.000 0.956 0.000 0.000 0.000 0.044
#> SRR1202303 4 0.3979 -0.1154 0.456 0.000 0.004 0.540 0.000 0.000
#> SRR1202372 2 0.0146 0.9404 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1202371 2 0.0713 0.9332 0.000 0.972 0.000 0.000 0.000 0.028
#> SRR1202563 3 0.4570 0.5975 0.000 0.252 0.668 0.000 0.000 0.080
#> SRR1202565 3 0.3618 0.6850 0.000 0.192 0.768 0.000 0.000 0.040
#> SRR1202564 3 0.3683 0.6840 0.000 0.192 0.764 0.000 0.000 0.044
#> SRR1202649 3 0.3381 0.7063 0.000 0.156 0.800 0.000 0.000 0.044
#> SRR1202650 3 0.3587 0.6819 0.000 0.188 0.772 0.000 0.000 0.040
#> SRR1202651 2 0.2301 0.8382 0.000 0.884 0.096 0.000 0.000 0.020
#> SRR1202843 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1202844 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1202845 3 0.4425 0.6373 0.000 0.152 0.716 0.000 0.000 0.132
#> SRR1202847 3 0.5089 0.5089 0.000 0.244 0.620 0.000 0.000 0.136
#> SRR1202846 3 0.5089 0.5089 0.000 0.244 0.620 0.000 0.000 0.136
#> SRR1202945 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1202949 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1202977 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1202978 1 0.0000 0.9827 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9827 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1202999 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203005 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203006 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203007 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203009 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203008 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203010 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203011 1 0.0000 0.9827 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203026 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203027 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203061 1 0.0000 0.9827 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203125 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203128 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203129 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203130 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203132 3 0.2006 0.7618 0.000 0.004 0.892 0.000 0.000 0.104
#> SRR1203131 3 0.1858 0.7661 0.000 0.004 0.904 0.000 0.000 0.092
#> SRR1203133 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203138 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203760 1 0.0000 0.9827 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203770 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203771 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203772 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203773 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203774 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203775 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203800 1 0.0000 0.9827 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203802 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203803 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203804 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203805 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203806 1 0.0000 0.9827 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203808 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203811 1 0.0000 0.9827 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203813 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203814 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203815 1 0.0000 0.9827 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203817 1 0.0000 0.9827 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203819 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203822 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203823 1 0.0000 0.9827 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9827 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203826 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203827 6 0.5218 0.0000 0.280 0.000 0.000 0.088 0.016 0.616
#> SRR1203828 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203829 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203830 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203831 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203832 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203833 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203834 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203835 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203836 1 0.0146 0.9818 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203837 1 0.0000 0.9827 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9827 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0146 0.9823 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203842 1 0.5133 -0.4267 0.540 0.000 0.000 0.052 0.016 0.392
#> SRR1203843 1 0.0000 0.9827 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203845 2 0.5355 -0.0640 0.000 0.468 0.424 0.000 0.000 0.108
#> SRR1203844 2 0.5361 -0.1205 0.000 0.452 0.440 0.000 0.000 0.108
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["SD", "pam"]
# you can also extract it by
# res = res_list["SD:pam"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'SD' method.
#> Subgroups are detected by 'pam' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 5.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.3796 0.621 0.621
#> 3 3 0.852 0.919 0.961 0.7237 0.723 0.554
#> 4 4 0.811 0.745 0.879 0.0667 0.967 0.905
#> 5 5 0.964 0.931 0.957 0.0785 0.859 0.601
#> 6 6 0.872 0.868 0.917 0.0552 0.961 0.839
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 5
#> attr(,"optional")
#> [1] 2
There is also optional best \(k\) = 2 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0 1 0 1
#> SRR1201590 2 0 1 0 1
#> SRR1201593 2 0 1 0 1
#> SRR1201592 2 0 1 0 1
#> SRR1201617 2 0 1 0 1
#> SRR1201616 2 0 1 0 1
#> SRR1201619 2 0 1 0 1
#> SRR1201618 2 0 1 0 1
#> SRR1201620 2 0 1 0 1
#> SRR1201621 2 0 1 0 1
#> SRR1201623 2 0 1 0 1
#> SRR1201622 2 0 1 0 1
#> SRR1201624 2 0 1 0 1
#> SRR1201625 2 0 1 0 1
#> SRR1201626 1 0 1 1 0
#> SRR1201627 2 0 1 0 1
#> SRR1201628 2 0 1 0 1
#> SRR1201629 2 0 1 0 1
#> SRR1201630 2 0 1 0 1
#> SRR1201631 2 0 1 0 1
#> SRR1201641 2 0 1 0 1
#> SRR1201640 2 0 1 0 1
#> SRR1201643 2 0 1 0 1
#> SRR1201644 2 0 1 0 1
#> SRR1201661 2 0 1 0 1
#> SRR1201662 2 0 1 0 1
#> SRR1201663 2 0 1 0 1
#> SRR1201664 2 0 1 0 1
#> SRR1201665 2 0 1 0 1
#> SRR1201666 2 0 1 0 1
#> SRR1201667 2 0 1 0 1
#> SRR1201668 2 0 1 0 1
#> SRR1201670 2 0 1 0 1
#> SRR1201669 2 0 1 0 1
#> SRR1201673 2 0 1 0 1
#> SRR1201672 2 0 1 0 1
#> SRR1201671 2 0 1 0 1
#> SRR1201677 2 0 1 0 1
#> SRR1201676 2 0 1 0 1
#> SRR1201675 2 0 1 0 1
#> SRR1201674 2 0 1 0 1
#> SRR1201678 2 0 1 0 1
#> SRR1201682 2 0 1 0 1
#> SRR1201683 2 0 1 0 1
#> SRR1201680 2 0 1 0 1
#> SRR1201681 2 0 1 0 1
#> SRR1201679 2 0 1 0 1
#> SRR1201686 2 0 1 0 1
#> SRR1201687 2 0 1 0 1
#> SRR1201688 2 0 1 0 1
#> SRR1201689 2 0 1 0 1
#> SRR1201685 2 0 1 0 1
#> SRR1201692 2 0 1 0 1
#> SRR1201691 2 0 1 0 1
#> SRR1201690 2 0 1 0 1
#> SRR1201696 2 0 1 0 1
#> SRR1201695 2 0 1 0 1
#> SRR1201694 2 0 1 0 1
#> SRR1201693 2 0 1 0 1
#> SRR1201697 2 0 1 0 1
#> SRR1201698 2 0 1 0 1
#> SRR1201700 2 0 1 0 1
#> SRR1201708 2 0 1 0 1
#> SRR1201707 2 0 1 0 1
#> SRR1201706 2 0 1 0 1
#> SRR1201702 2 0 1 0 1
#> SRR1201705 2 0 1 0 1
#> SRR1201701 2 0 1 0 1
#> SRR1201704 2 0 1 0 1
#> SRR1201703 2 0 1 0 1
#> SRR1201716 2 0 1 0 1
#> SRR1201715 2 0 1 0 1
#> SRR1201717 2 0 1 0 1
#> SRR1201712 2 0 1 0 1
#> SRR1201709 2 0 1 0 1
#> SRR1201711 2 0 1 0 1
#> SRR1201714 2 0 1 0 1
#> SRR1201713 2 0 1 0 1
#> SRR1201710 2 0 1 0 1
#> SRR1201719 2 0 1 0 1
#> SRR1201718 2 0 1 0 1
#> SRR1201721 2 0 1 0 1
#> SRR1201720 2 0 1 0 1
#> SRR1201723 2 0 1 0 1
#> SRR1201722 2 0 1 0 1
#> SRR1201725 2 0 1 0 1
#> SRR1201724 2 0 1 0 1
#> SRR1201726 2 0 1 0 1
#> SRR1201727 2 0 1 0 1
#> SRR1201731 2 0 1 0 1
#> SRR1201730 2 0 1 0 1
#> SRR1201734 2 0 1 0 1
#> SRR1201733 2 0 1 0 1
#> SRR1201736 2 0 1 0 1
#> SRR1201737 2 0 1 0 1
#> SRR1201739 2 0 1 0 1
#> SRR1201738 2 0 1 0 1
#> SRR1201742 2 0 1 0 1
#> SRR1201743 2 0 1 0 1
#> SRR1201745 2 0 1 0 1
#> SRR1201744 2 0 1 0 1
#> SRR1201749 2 0 1 0 1
#> SRR1201750 2 0 1 0 1
#> SRR1201752 2 0 1 0 1
#> SRR1201751 2 0 1 0 1
#> SRR1201754 2 0 1 0 1
#> SRR1201753 2 0 1 0 1
#> SRR1201758 2 0 1 0 1
#> SRR1201759 2 0 1 0 1
#> SRR1201760 2 0 1 0 1
#> SRR1201761 2 0 1 0 1
#> SRR1201763 2 0 1 0 1
#> SRR1201762 2 0 1 0 1
#> SRR1201764 2 0 1 0 1
#> SRR1201766 2 0 1 0 1
#> SRR1201768 2 0 1 0 1
#> SRR1201769 2 0 1 0 1
#> SRR1201767 2 0 1 0 1
#> SRR1201770 2 0 1 0 1
#> SRR1201771 2 0 1 0 1
#> SRR1201772 2 0 1 0 1
#> SRR1201773 2 0 1 0 1
#> SRR1201774 2 0 1 0 1
#> SRR1201786 2 0 1 0 1
#> SRR1201784 2 0 1 0 1
#> SRR1201785 2 0 1 0 1
#> SRR1201778 2 0 1 0 1
#> SRR1201779 2 0 1 0 1
#> SRR1201781 2 0 1 0 1
#> SRR1201780 2 0 1 0 1
#> SRR1201783 2 0 1 0 1
#> SRR1201782 2 0 1 0 1
#> SRR1201798 2 0 1 0 1
#> SRR1201797 2 0 1 0 1
#> SRR1201796 2 0 1 0 1
#> SRR1201795 2 0 1 0 1
#> SRR1201799 2 0 1 0 1
#> SRR1201794 2 0 1 0 1
#> SRR1201793 2 0 1 0 1
#> SRR1201792 2 0 1 0 1
#> SRR1201791 2 0 1 0 1
#> SRR1201807 2 0 1 0 1
#> SRR1201808 2 0 1 0 1
#> SRR1201803 2 0 1 0 1
#> SRR1201804 2 0 1 0 1
#> SRR1201805 2 0 1 0 1
#> SRR1201806 2 0 1 0 1
#> SRR1201801 2 0 1 0 1
#> SRR1201802 2 0 1 0 1
#> SRR1201800 2 0 1 0 1
#> SRR1201814 2 0 1 0 1
#> SRR1201816 2 0 1 0 1
#> SRR1201815 2 0 1 0 1
#> SRR1201819 2 0 1 0 1
#> SRR1201820 2 0 1 0 1
#> SRR1201813 2 0 1 0 1
#> SRR1201817 2 0 1 0 1
#> SRR1201818 2 0 1 0 1
#> SRR1201825 2 0 1 0 1
#> SRR1201827 2 0 1 0 1
#> SRR1201828 2 0 1 0 1
#> SRR1201826 2 0 1 0 1
#> SRR1201829 2 0 1 0 1
#> SRR1201830 2 0 1 0 1
#> SRR1201831 2 0 1 0 1
#> SRR1201832 2 0 1 0 1
#> SRR1201833 2 0 1 0 1
#> SRR1201865 2 0 1 0 1
#> SRR1201866 2 0 1 0 1
#> SRR1201867 2 0 1 0 1
#> SRR1201861 2 0 1 0 1
#> SRR1201862 2 0 1 0 1
#> SRR1201863 2 0 1 0 1
#> SRR1201859 2 0 1 0 1
#> SRR1201864 2 0 1 0 1
#> SRR1201860 2 0 1 0 1
#> SRR1201873 2 0 1 0 1
#> SRR1201871 2 0 1 0 1
#> SRR1201872 2 0 1 0 1
#> SRR1201980 2 0 1 0 1
#> SRR1201979 2 0 1 0 1
#> SRR1201982 2 0 1 0 1
#> SRR1201981 2 0 1 0 1
#> SRR1201998 2 0 1 0 1
#> SRR1201996 2 0 1 0 1
#> SRR1201997 2 0 1 0 1
#> SRR1202005 2 0 1 0 1
#> SRR1202006 2 0 1 0 1
#> SRR1202088 2 0 1 0 1
#> SRR1202087 2 0 1 0 1
#> SRR1202093 2 0 1 0 1
#> SRR1202092 2 0 1 0 1
#> SRR1202288 2 0 1 0 1
#> SRR1202289 2 0 1 0 1
#> SRR1202299 2 0 1 0 1
#> SRR1202298 2 0 1 0 1
#> SRR1202303 2 0 1 0 1
#> SRR1202372 2 0 1 0 1
#> SRR1202371 2 0 1 0 1
#> SRR1202563 2 0 1 0 1
#> SRR1202565 2 0 1 0 1
#> SRR1202564 2 0 1 0 1
#> SRR1202649 2 0 1 0 1
#> SRR1202650 2 0 1 0 1
#> SRR1202651 2 0 1 0 1
#> SRR1202843 1 0 1 1 0
#> SRR1202844 1 0 1 1 0
#> SRR1202845 2 0 1 0 1
#> SRR1202847 2 0 1 0 1
#> SRR1202846 2 0 1 0 1
#> SRR1202945 1 0 1 1 0
#> SRR1202949 1 0 1 1 0
#> SRR1202977 1 0 1 1 0
#> SRR1202978 1 0 1 1 0
#> SRR1202979 1 0 1 1 0
#> SRR1202990 1 0 1 1 0
#> SRR1202999 1 0 1 1 0
#> SRR1203005 1 0 1 1 0
#> SRR1203006 1 0 1 1 0
#> SRR1203007 1 0 1 1 0
#> SRR1203009 1 0 1 1 0
#> SRR1203008 1 0 1 1 0
#> SRR1203010 1 0 1 1 0
#> SRR1203011 1 0 1 1 0
#> SRR1203025 1 0 1 1 0
#> SRR1203026 1 0 1 1 0
#> SRR1203027 1 0 1 1 0
#> SRR1203061 1 0 1 1 0
#> SRR1203089 1 0 1 1 0
#> SRR1203125 1 0 1 1 0
#> SRR1203128 1 0 1 1 0
#> SRR1203129 1 0 1 1 0
#> SRR1203130 1 0 1 1 0
#> SRR1203132 2 0 1 0 1
#> SRR1203131 2 0 1 0 1
#> SRR1203133 1 0 1 1 0
#> SRR1203138 1 0 1 1 0
#> SRR1203760 1 0 1 1 0
#> SRR1203761 1 0 1 1 0
#> SRR1203770 1 0 1 1 0
#> SRR1203771 1 0 1 1 0
#> SRR1203772 1 0 1 1 0
#> SRR1203773 1 0 1 1 0
#> SRR1203774 1 0 1 1 0
#> SRR1203775 1 0 1 1 0
#> SRR1203800 1 0 1 1 0
#> SRR1203801 1 0 1 1 0
#> SRR1203802 1 0 1 1 0
#> SRR1203803 1 0 1 1 0
#> SRR1203804 1 0 1 1 0
#> SRR1203805 1 0 1 1 0
#> SRR1203806 1 0 1 1 0
#> SRR1203807 1 0 1 1 0
#> SRR1203808 1 0 1 1 0
#> SRR1203811 1 0 1 1 0
#> SRR1203812 1 0 1 1 0
#> SRR1203813 1 0 1 1 0
#> SRR1203814 1 0 1 1 0
#> SRR1203815 1 0 1 1 0
#> SRR1203816 1 0 1 1 0
#> SRR1203817 1 0 1 1 0
#> SRR1203818 1 0 1 1 0
#> SRR1203819 1 0 1 1 0
#> SRR1203822 1 0 1 1 0
#> SRR1203823 1 0 1 1 0
#> SRR1203824 1 0 1 1 0
#> SRR1203825 1 0 1 1 0
#> SRR1203826 1 0 1 1 0
#> SRR1203827 2 0 1 0 1
#> SRR1203828 1 0 1 1 0
#> SRR1203829 1 0 1 1 0
#> SRR1203830 1 0 1 1 0
#> SRR1203831 1 0 1 1 0
#> SRR1203832 1 0 1 1 0
#> SRR1203833 1 0 1 1 0
#> SRR1203834 1 0 1 1 0
#> SRR1203835 1 0 1 1 0
#> SRR1203836 1 0 1 1 0
#> SRR1203837 1 0 1 1 0
#> SRR1203838 1 0 1 1 0
#> SRR1203839 1 0 1 1 0
#> SRR1203842 2 0 1 0 1
#> SRR1203843 1 0 1 1 0
#> SRR1203845 2 0 1 0 1
#> SRR1203844 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0.0000 0.924 0 1.000 0.000
#> SRR1201590 2 0.0000 0.924 0 1.000 0.000
#> SRR1201593 2 0.0000 0.924 0 1.000 0.000
#> SRR1201592 2 0.0000 0.924 0 1.000 0.000
#> SRR1201617 2 0.0000 0.924 0 1.000 0.000
#> SRR1201616 2 0.0000 0.924 0 1.000 0.000
#> SRR1201619 2 0.0237 0.921 0 0.996 0.004
#> SRR1201618 2 0.3941 0.821 0 0.844 0.156
#> SRR1201620 2 0.0000 0.924 0 1.000 0.000
#> SRR1201621 2 0.0000 0.924 0 1.000 0.000
#> SRR1201623 3 0.0000 0.967 0 0.000 1.000
#> SRR1201622 3 0.0000 0.967 0 0.000 1.000
#> SRR1201624 3 0.0000 0.967 0 0.000 1.000
#> SRR1201625 3 0.0000 0.967 0 0.000 1.000
#> SRR1201626 1 0.0000 1.000 1 0.000 0.000
#> SRR1201627 3 0.0000 0.967 0 0.000 1.000
#> SRR1201628 3 0.0000 0.967 0 0.000 1.000
#> SRR1201629 3 0.0000 0.967 0 0.000 1.000
#> SRR1201630 3 0.5098 0.643 0 0.248 0.752
#> SRR1201631 2 0.5363 0.691 0 0.724 0.276
#> SRR1201641 2 0.4750 0.769 0 0.784 0.216
#> SRR1201640 3 0.6154 0.219 0 0.408 0.592
#> SRR1201643 3 0.0000 0.967 0 0.000 1.000
#> SRR1201644 3 0.0000 0.967 0 0.000 1.000
#> SRR1201661 2 0.5016 0.740 0 0.760 0.240
#> SRR1201662 2 0.4178 0.813 0 0.828 0.172
#> SRR1201663 3 0.0000 0.967 0 0.000 1.000
#> SRR1201664 3 0.0000 0.967 0 0.000 1.000
#> SRR1201665 2 0.0000 0.924 0 1.000 0.000
#> SRR1201666 2 0.0000 0.924 0 1.000 0.000
#> SRR1201667 2 0.0000 0.924 0 1.000 0.000
#> SRR1201668 3 0.0000 0.967 0 0.000 1.000
#> SRR1201670 3 0.0000 0.967 0 0.000 1.000
#> SRR1201669 3 0.0000 0.967 0 0.000 1.000
#> SRR1201673 2 0.4346 0.802 0 0.816 0.184
#> SRR1201672 2 0.4346 0.802 0 0.816 0.184
#> SRR1201671 3 0.3752 0.816 0 0.144 0.856
#> SRR1201677 2 0.4235 0.809 0 0.824 0.176
#> SRR1201676 2 0.4399 0.798 0 0.812 0.188
#> SRR1201675 2 0.4235 0.809 0 0.824 0.176
#> SRR1201674 2 0.4178 0.812 0 0.828 0.172
#> SRR1201678 2 0.4235 0.809 0 0.824 0.176
#> SRR1201682 2 0.0000 0.924 0 1.000 0.000
#> SRR1201683 2 0.0000 0.924 0 1.000 0.000
#> SRR1201680 2 0.0000 0.924 0 1.000 0.000
#> SRR1201681 2 0.0000 0.924 0 1.000 0.000
#> SRR1201679 2 0.0000 0.924 0 1.000 0.000
#> SRR1201686 3 0.0000 0.967 0 0.000 1.000
#> SRR1201687 3 0.0000 0.967 0 0.000 1.000
#> SRR1201688 3 0.0000 0.967 0 0.000 1.000
#> SRR1201689 3 0.0000 0.967 0 0.000 1.000
#> SRR1201685 3 0.0000 0.967 0 0.000 1.000
#> SRR1201692 3 0.0000 0.967 0 0.000 1.000
#> SRR1201691 3 0.0000 0.967 0 0.000 1.000
#> SRR1201690 3 0.0000 0.967 0 0.000 1.000
#> SRR1201696 3 0.0000 0.967 0 0.000 1.000
#> SRR1201695 3 0.0000 0.967 0 0.000 1.000
#> SRR1201694 3 0.0000 0.967 0 0.000 1.000
#> SRR1201693 3 0.0000 0.967 0 0.000 1.000
#> SRR1201697 3 0.0000 0.967 0 0.000 1.000
#> SRR1201698 3 0.0000 0.967 0 0.000 1.000
#> SRR1201700 3 0.0000 0.967 0 0.000 1.000
#> SRR1201708 3 0.0000 0.967 0 0.000 1.000
#> SRR1201707 3 0.0000 0.967 0 0.000 1.000
#> SRR1201706 3 0.0000 0.967 0 0.000 1.000
#> SRR1201702 3 0.0000 0.967 0 0.000 1.000
#> SRR1201705 3 0.0000 0.967 0 0.000 1.000
#> SRR1201701 3 0.0000 0.967 0 0.000 1.000
#> SRR1201704 3 0.0000 0.967 0 0.000 1.000
#> SRR1201703 3 0.0000 0.967 0 0.000 1.000
#> SRR1201716 3 0.0000 0.967 0 0.000 1.000
#> SRR1201715 3 0.0000 0.967 0 0.000 1.000
#> SRR1201717 3 0.0000 0.967 0 0.000 1.000
#> SRR1201712 3 0.0000 0.967 0 0.000 1.000
#> SRR1201709 3 0.0000 0.967 0 0.000 1.000
#> SRR1201711 3 0.0000 0.967 0 0.000 1.000
#> SRR1201714 3 0.0000 0.967 0 0.000 1.000
#> SRR1201713 3 0.0000 0.967 0 0.000 1.000
#> SRR1201710 3 0.0000 0.967 0 0.000 1.000
#> SRR1201719 2 0.4504 0.790 0 0.804 0.196
#> SRR1201718 2 0.5178 0.720 0 0.744 0.256
#> SRR1201721 3 0.0000 0.967 0 0.000 1.000
#> SRR1201720 3 0.0000 0.967 0 0.000 1.000
#> SRR1201723 3 0.0000 0.967 0 0.000 1.000
#> SRR1201722 3 0.0000 0.967 0 0.000 1.000
#> SRR1201725 2 0.5397 0.685 0 0.720 0.280
#> SRR1201724 2 0.6180 0.409 0 0.584 0.416
#> SRR1201726 3 0.0000 0.967 0 0.000 1.000
#> SRR1201727 3 0.0000 0.967 0 0.000 1.000
#> SRR1201731 3 0.0000 0.967 0 0.000 1.000
#> SRR1201730 3 0.0000 0.967 0 0.000 1.000
#> SRR1201734 2 0.0000 0.924 0 1.000 0.000
#> SRR1201733 2 0.0000 0.924 0 1.000 0.000
#> SRR1201736 2 0.0000 0.924 0 1.000 0.000
#> SRR1201737 2 0.0000 0.924 0 1.000 0.000
#> SRR1201739 2 0.0000 0.924 0 1.000 0.000
#> SRR1201738 2 0.0000 0.924 0 1.000 0.000
#> SRR1201742 2 0.3686 0.837 0 0.860 0.140
#> SRR1201743 2 0.0000 0.924 0 1.000 0.000
#> SRR1201745 2 0.0000 0.924 0 1.000 0.000
#> SRR1201744 2 0.0000 0.924 0 1.000 0.000
#> SRR1201749 2 0.0000 0.924 0 1.000 0.000
#> SRR1201750 2 0.0000 0.924 0 1.000 0.000
#> SRR1201752 3 0.0000 0.967 0 0.000 1.000
#> SRR1201751 3 0.0000 0.967 0 0.000 1.000
#> SRR1201754 2 0.0000 0.924 0 1.000 0.000
#> SRR1201753 2 0.0000 0.924 0 1.000 0.000
#> SRR1201758 3 0.0000 0.967 0 0.000 1.000
#> SRR1201759 3 0.0000 0.967 0 0.000 1.000
#> SRR1201760 3 0.0000 0.967 0 0.000 1.000
#> SRR1201761 3 0.0000 0.967 0 0.000 1.000
#> SRR1201763 3 0.0000 0.967 0 0.000 1.000
#> SRR1201762 3 0.0000 0.967 0 0.000 1.000
#> SRR1201764 3 0.3816 0.809 0 0.148 0.852
#> SRR1201766 2 0.0000 0.924 0 1.000 0.000
#> SRR1201768 2 0.0000 0.924 0 1.000 0.000
#> SRR1201769 2 0.0000 0.924 0 1.000 0.000
#> SRR1201767 2 0.0000 0.924 0 1.000 0.000
#> SRR1201770 2 0.0000 0.924 0 1.000 0.000
#> SRR1201771 2 0.0000 0.924 0 1.000 0.000
#> SRR1201772 2 0.0000 0.924 0 1.000 0.000
#> SRR1201773 2 0.0000 0.924 0 1.000 0.000
#> SRR1201774 2 0.0000 0.924 0 1.000 0.000
#> SRR1201786 2 0.0000 0.924 0 1.000 0.000
#> SRR1201784 2 0.0000 0.924 0 1.000 0.000
#> SRR1201785 2 0.0000 0.924 0 1.000 0.000
#> SRR1201778 2 0.0000 0.924 0 1.000 0.000
#> SRR1201779 2 0.0000 0.924 0 1.000 0.000
#> SRR1201781 2 0.0000 0.924 0 1.000 0.000
#> SRR1201780 2 0.0000 0.924 0 1.000 0.000
#> SRR1201783 2 0.0000 0.924 0 1.000 0.000
#> SRR1201782 2 0.0000 0.924 0 1.000 0.000
#> SRR1201798 2 0.0000 0.924 0 1.000 0.000
#> SRR1201797 2 0.0000 0.924 0 1.000 0.000
#> SRR1201796 2 0.0000 0.924 0 1.000 0.000
#> SRR1201795 2 0.0000 0.924 0 1.000 0.000
#> SRR1201799 2 0.0000 0.924 0 1.000 0.000
#> SRR1201794 2 0.0000 0.924 0 1.000 0.000
#> SRR1201793 2 0.0000 0.924 0 1.000 0.000
#> SRR1201792 2 0.0000 0.924 0 1.000 0.000
#> SRR1201791 2 0.0000 0.924 0 1.000 0.000
#> SRR1201807 2 0.0000 0.924 0 1.000 0.000
#> SRR1201808 2 0.0000 0.924 0 1.000 0.000
#> SRR1201803 2 0.0000 0.924 0 1.000 0.000
#> SRR1201804 2 0.0000 0.924 0 1.000 0.000
#> SRR1201805 2 0.0000 0.924 0 1.000 0.000
#> SRR1201806 2 0.0000 0.924 0 1.000 0.000
#> SRR1201801 2 0.0000 0.924 0 1.000 0.000
#> SRR1201802 2 0.0000 0.924 0 1.000 0.000
#> SRR1201800 2 0.0000 0.924 0 1.000 0.000
#> SRR1201814 2 0.0000 0.924 0 1.000 0.000
#> SRR1201816 2 0.0000 0.924 0 1.000 0.000
#> SRR1201815 2 0.0000 0.924 0 1.000 0.000
#> SRR1201819 2 0.0000 0.924 0 1.000 0.000
#> SRR1201820 2 0.0000 0.924 0 1.000 0.000
#> SRR1201813 2 0.0000 0.924 0 1.000 0.000
#> SRR1201817 2 0.0000 0.924 0 1.000 0.000
#> SRR1201818 2 0.0000 0.924 0 1.000 0.000
#> SRR1201825 3 0.0000 0.967 0 0.000 1.000
#> SRR1201827 2 0.5926 0.547 0 0.644 0.356
#> SRR1201828 2 0.5785 0.595 0 0.668 0.332
#> SRR1201826 3 0.1163 0.942 0 0.028 0.972
#> SRR1201829 2 0.5859 0.572 0 0.656 0.344
#> SRR1201830 2 0.5810 0.587 0 0.664 0.336
#> SRR1201831 2 0.6008 0.514 0 0.628 0.372
#> SRR1201832 2 0.5785 0.595 0 0.668 0.332
#> SRR1201833 2 0.5882 0.565 0 0.652 0.348
#> SRR1201865 3 0.0000 0.967 0 0.000 1.000
#> SRR1201866 3 0.0000 0.967 0 0.000 1.000
#> SRR1201867 3 0.0000 0.967 0 0.000 1.000
#> SRR1201861 3 0.0000 0.967 0 0.000 1.000
#> SRR1201862 3 0.0000 0.967 0 0.000 1.000
#> SRR1201863 3 0.0000 0.967 0 0.000 1.000
#> SRR1201859 3 0.0000 0.967 0 0.000 1.000
#> SRR1201864 3 0.0000 0.967 0 0.000 1.000
#> SRR1201860 3 0.0000 0.967 0 0.000 1.000
#> SRR1201873 3 0.0000 0.967 0 0.000 1.000
#> SRR1201871 3 0.0000 0.967 0 0.000 1.000
#> SRR1201872 3 0.0000 0.967 0 0.000 1.000
#> SRR1201980 3 0.0000 0.967 0 0.000 1.000
#> SRR1201979 3 0.0000 0.967 0 0.000 1.000
#> SRR1201982 3 0.5178 0.622 0 0.256 0.744
#> SRR1201981 3 0.0000 0.967 0 0.000 1.000
#> SRR1201998 3 0.3752 0.808 0 0.144 0.856
#> SRR1201996 3 0.4002 0.786 0 0.160 0.840
#> SRR1201997 2 0.6302 0.217 0 0.520 0.480
#> SRR1202005 2 0.4346 0.802 0 0.816 0.184
#> SRR1202006 2 0.3941 0.826 0 0.844 0.156
#> SRR1202088 3 0.5591 0.567 0 0.304 0.696
#> SRR1202087 3 0.1289 0.938 0 0.032 0.968
#> SRR1202093 2 0.0000 0.924 0 1.000 0.000
#> SRR1202092 2 0.0000 0.924 0 1.000 0.000
#> SRR1202288 2 0.0000 0.924 0 1.000 0.000
#> SRR1202289 2 0.0000 0.924 0 1.000 0.000
#> SRR1202299 2 0.0000 0.924 0 1.000 0.000
#> SRR1202298 2 0.0000 0.924 0 1.000 0.000
#> SRR1202303 3 0.2066 0.912 0 0.060 0.940
#> SRR1202372 2 0.0000 0.924 0 1.000 0.000
#> SRR1202371 2 0.0000 0.924 0 1.000 0.000
#> SRR1202563 2 0.4504 0.790 0 0.804 0.196
#> SRR1202565 2 0.4452 0.794 0 0.808 0.192
#> SRR1202564 2 0.4452 0.794 0 0.808 0.192
#> SRR1202649 3 0.5254 0.619 0 0.264 0.736
#> SRR1202650 3 0.5529 0.553 0 0.296 0.704
#> SRR1202651 2 0.4452 0.794 0 0.808 0.192
#> SRR1202843 1 0.0000 1.000 1 0.000 0.000
#> SRR1202844 1 0.0000 1.000 1 0.000 0.000
#> SRR1202845 3 0.5178 0.623 0 0.256 0.744
#> SRR1202847 2 0.5098 0.730 0 0.752 0.248
#> SRR1202846 2 0.5138 0.725 0 0.748 0.252
#> SRR1202945 1 0.0000 1.000 1 0.000 0.000
#> SRR1202949 1 0.0000 1.000 1 0.000 0.000
#> SRR1202977 1 0.0000 1.000 1 0.000 0.000
#> SRR1202978 1 0.0000 1.000 1 0.000 0.000
#> SRR1202979 1 0.0000 1.000 1 0.000 0.000
#> SRR1202990 1 0.0000 1.000 1 0.000 0.000
#> SRR1202999 1 0.0000 1.000 1 0.000 0.000
#> SRR1203005 1 0.0000 1.000 1 0.000 0.000
#> SRR1203006 1 0.0000 1.000 1 0.000 0.000
#> SRR1203007 1 0.0000 1.000 1 0.000 0.000
#> SRR1203009 1 0.0000 1.000 1 0.000 0.000
#> SRR1203008 1 0.0000 1.000 1 0.000 0.000
#> SRR1203010 1 0.0000 1.000 1 0.000 0.000
#> SRR1203011 1 0.0000 1.000 1 0.000 0.000
#> SRR1203025 1 0.0000 1.000 1 0.000 0.000
#> SRR1203026 1 0.0000 1.000 1 0.000 0.000
#> SRR1203027 1 0.0000 1.000 1 0.000 0.000
#> SRR1203061 1 0.0000 1.000 1 0.000 0.000
#> SRR1203089 1 0.0000 1.000 1 0.000 0.000
#> SRR1203125 1 0.0000 1.000 1 0.000 0.000
#> SRR1203128 1 0.0000 1.000 1 0.000 0.000
#> SRR1203129 1 0.0000 1.000 1 0.000 0.000
#> SRR1203130 1 0.0000 1.000 1 0.000 0.000
#> SRR1203132 3 0.0000 0.967 0 0.000 1.000
#> SRR1203131 3 0.0000 0.967 0 0.000 1.000
#> SRR1203133 1 0.0000 1.000 1 0.000 0.000
#> SRR1203138 1 0.0000 1.000 1 0.000 0.000
#> SRR1203760 1 0.0000 1.000 1 0.000 0.000
#> SRR1203761 1 0.0000 1.000 1 0.000 0.000
#> SRR1203770 1 0.0000 1.000 1 0.000 0.000
#> SRR1203771 1 0.0000 1.000 1 0.000 0.000
#> SRR1203772 1 0.0000 1.000 1 0.000 0.000
#> SRR1203773 1 0.0000 1.000 1 0.000 0.000
#> SRR1203774 1 0.0000 1.000 1 0.000 0.000
#> SRR1203775 1 0.0000 1.000 1 0.000 0.000
#> SRR1203800 1 0.0000 1.000 1 0.000 0.000
#> SRR1203801 1 0.0000 1.000 1 0.000 0.000
#> SRR1203802 1 0.0000 1.000 1 0.000 0.000
#> SRR1203803 1 0.0000 1.000 1 0.000 0.000
#> SRR1203804 1 0.0000 1.000 1 0.000 0.000
#> SRR1203805 1 0.0000 1.000 1 0.000 0.000
#> SRR1203806 1 0.0000 1.000 1 0.000 0.000
#> SRR1203807 1 0.0000 1.000 1 0.000 0.000
#> SRR1203808 1 0.0000 1.000 1 0.000 0.000
#> SRR1203811 1 0.0000 1.000 1 0.000 0.000
#> SRR1203812 1 0.0000 1.000 1 0.000 0.000
#> SRR1203813 1 0.0000 1.000 1 0.000 0.000
#> SRR1203814 1 0.0000 1.000 1 0.000 0.000
#> SRR1203815 1 0.0000 1.000 1 0.000 0.000
#> SRR1203816 1 0.0000 1.000 1 0.000 0.000
#> SRR1203817 1 0.0000 1.000 1 0.000 0.000
#> SRR1203818 1 0.0000 1.000 1 0.000 0.000
#> SRR1203819 1 0.0000 1.000 1 0.000 0.000
#> SRR1203822 1 0.0000 1.000 1 0.000 0.000
#> SRR1203823 1 0.0000 1.000 1 0.000 0.000
#> SRR1203824 1 0.0000 1.000 1 0.000 0.000
#> SRR1203825 1 0.0000 1.000 1 0.000 0.000
#> SRR1203826 1 0.0000 1.000 1 0.000 0.000
#> SRR1203827 3 0.0237 0.964 0 0.004 0.996
#> SRR1203828 1 0.0000 1.000 1 0.000 0.000
#> SRR1203829 1 0.0000 1.000 1 0.000 0.000
#> SRR1203830 1 0.0000 1.000 1 0.000 0.000
#> SRR1203831 1 0.0000 1.000 1 0.000 0.000
#> SRR1203832 1 0.0000 1.000 1 0.000 0.000
#> SRR1203833 1 0.0000 1.000 1 0.000 0.000
#> SRR1203834 1 0.0000 1.000 1 0.000 0.000
#> SRR1203835 1 0.0000 1.000 1 0.000 0.000
#> SRR1203836 1 0.0000 1.000 1 0.000 0.000
#> SRR1203837 1 0.0000 1.000 1 0.000 0.000
#> SRR1203838 1 0.0000 1.000 1 0.000 0.000
#> SRR1203839 1 0.0000 1.000 1 0.000 0.000
#> SRR1203842 2 0.4452 0.794 0 0.808 0.192
#> SRR1203843 1 0.0000 1.000 1 0.000 0.000
#> SRR1203845 2 0.0237 0.921 0 0.996 0.004
#> SRR1203844 2 0.3038 0.863 0 0.896 0.104
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201590 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201593 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201592 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201617 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201616 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201619 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201618 2 0.3450 0.67779 0.000 0.836 0.156 0.008
#> SRR1201620 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201621 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201623 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201622 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201624 4 0.4907 0.64248 0.000 0.000 0.420 0.580
#> SRR1201625 3 0.4431 0.00691 0.000 0.000 0.696 0.304
#> SRR1201626 4 0.4972 0.01875 0.456 0.000 0.000 0.544
#> SRR1201627 4 0.4564 0.72816 0.000 0.000 0.328 0.672
#> SRR1201628 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201629 3 0.3649 0.70355 0.000 0.000 0.796 0.204
#> SRR1201630 3 0.7045 0.53779 0.000 0.140 0.532 0.328
#> SRR1201631 2 0.7812 0.05556 0.000 0.408 0.264 0.328
#> SRR1201641 2 0.7490 0.25471 0.000 0.476 0.196 0.328
#> SRR1201640 3 0.7464 0.46520 0.000 0.192 0.480 0.328
#> SRR1201643 3 0.3356 0.70376 0.000 0.000 0.824 0.176
#> SRR1201644 3 0.2921 0.70332 0.000 0.000 0.860 0.140
#> SRR1201661 2 0.7629 0.19226 0.000 0.452 0.220 0.328
#> SRR1201662 2 0.6245 0.52641 0.000 0.668 0.168 0.164
#> SRR1201663 3 0.0336 0.68943 0.000 0.000 0.992 0.008
#> SRR1201664 3 0.0336 0.68943 0.000 0.000 0.992 0.008
#> SRR1201665 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201666 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201667 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201668 3 0.0336 0.68943 0.000 0.000 0.992 0.008
#> SRR1201670 3 0.0336 0.68943 0.000 0.000 0.992 0.008
#> SRR1201669 3 0.0336 0.68943 0.000 0.000 0.992 0.008
#> SRR1201673 2 0.7290 0.31868 0.000 0.504 0.168 0.328
#> SRR1201672 2 0.7290 0.31858 0.000 0.504 0.168 0.328
#> SRR1201671 3 0.6925 0.55886 0.000 0.128 0.544 0.328
#> SRR1201677 2 0.7258 0.32647 0.000 0.508 0.164 0.328
#> SRR1201676 2 0.7321 0.31043 0.000 0.500 0.172 0.328
#> SRR1201675 2 0.7258 0.32647 0.000 0.508 0.164 0.328
#> SRR1201674 2 0.7225 0.33396 0.000 0.512 0.160 0.328
#> SRR1201678 2 0.7258 0.32647 0.000 0.508 0.164 0.328
#> SRR1201682 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201683 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201680 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201681 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201679 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201686 3 0.0336 0.68943 0.000 0.000 0.992 0.008
#> SRR1201687 3 0.0336 0.68943 0.000 0.000 0.992 0.008
#> SRR1201688 3 0.0336 0.68943 0.000 0.000 0.992 0.008
#> SRR1201689 3 0.0336 0.68943 0.000 0.000 0.992 0.008
#> SRR1201685 3 0.0336 0.68943 0.000 0.000 0.992 0.008
#> SRR1201692 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201691 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201690 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201696 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201695 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201694 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201693 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201697 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201698 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201700 3 0.4543 0.69969 0.000 0.000 0.676 0.324
#> SRR1201708 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201707 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201706 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201702 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201705 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201701 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201704 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201703 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201716 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201715 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201717 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201712 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201709 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201711 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201714 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201713 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201710 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201719 2 0.7352 0.30183 0.000 0.496 0.176 0.328
#> SRR1201718 2 0.7724 0.13411 0.000 0.432 0.240 0.328
#> SRR1201721 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201720 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201723 3 0.0336 0.68943 0.000 0.000 0.992 0.008
#> SRR1201722 3 0.0336 0.68943 0.000 0.000 0.992 0.008
#> SRR1201725 2 0.7812 0.05532 0.000 0.408 0.264 0.328
#> SRR1201724 3 0.7824 0.34681 0.000 0.268 0.404 0.328
#> SRR1201726 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201727 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201731 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201730 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201734 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201733 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201736 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201737 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201739 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201738 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201742 2 0.3707 0.69200 0.000 0.840 0.132 0.028
#> SRR1201743 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201745 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201744 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201749 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201750 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201752 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201751 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201754 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201753 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201758 3 0.3610 0.31079 0.000 0.000 0.800 0.200
#> SRR1201759 3 0.0336 0.68943 0.000 0.000 0.992 0.008
#> SRR1201760 3 0.0592 0.69825 0.000 0.000 0.984 0.016
#> SRR1201761 3 0.2281 0.70198 0.000 0.000 0.904 0.096
#> SRR1201763 4 0.4564 0.72816 0.000 0.000 0.328 0.672
#> SRR1201762 4 0.4564 0.72816 0.000 0.000 0.328 0.672
#> SRR1201764 3 0.6603 0.59465 0.000 0.100 0.572 0.328
#> SRR1201766 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201768 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201769 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201767 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201770 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201771 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201772 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201773 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201774 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201786 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201784 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201785 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201778 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201779 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201781 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201780 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201783 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201782 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201798 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201797 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201796 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201795 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201799 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201794 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201793 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201792 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201791 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201807 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201808 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201803 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201804 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201805 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201806 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201801 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201802 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201800 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201814 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201816 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201815 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201819 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201820 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201813 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201817 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201818 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1201825 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201827 2 0.7923 -0.17143 0.000 0.344 0.328 0.328
#> SRR1201828 2 0.7912 -0.11761 0.000 0.360 0.312 0.328
#> SRR1201826 3 0.5492 0.67091 0.000 0.032 0.640 0.328
#> SRR1201829 2 0.7919 -0.14463 0.000 0.352 0.320 0.328
#> SRR1201830 2 0.7912 -0.11788 0.000 0.360 0.312 0.328
#> SRR1201831 3 0.7921 0.21919 0.000 0.324 0.348 0.328
#> SRR1201832 2 0.7907 -0.10402 0.000 0.364 0.308 0.328
#> SRR1201833 2 0.7921 -0.15735 0.000 0.348 0.324 0.328
#> SRR1201865 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201866 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201867 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201861 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201862 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201863 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201859 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201864 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201860 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201873 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201871 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201872 3 0.0000 0.69656 0.000 0.000 1.000 0.000
#> SRR1201980 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201979 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201982 3 0.6153 0.63185 0.000 0.068 0.604 0.328
#> SRR1201981 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1201998 3 0.4741 0.69615 0.000 0.004 0.668 0.328
#> SRR1201996 3 0.4999 0.68938 0.000 0.012 0.660 0.328
#> SRR1201997 3 0.7564 0.43716 0.000 0.208 0.464 0.328
#> SRR1202005 2 0.7146 0.38223 0.000 0.548 0.176 0.276
#> SRR1202006 2 0.4638 0.64508 0.000 0.788 0.152 0.060
#> SRR1202088 3 0.4454 0.13734 0.000 0.308 0.692 0.000
#> SRR1202087 3 0.0817 0.66562 0.000 0.024 0.976 0.000
#> SRR1202093 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1202092 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1202288 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1202289 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1202299 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1202298 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1202303 4 0.0000 0.50967 0.000 0.000 0.000 1.000
#> SRR1202372 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1202371 2 0.0000 0.83346 0.000 1.000 0.000 0.000
#> SRR1202563 2 0.7352 0.30183 0.000 0.496 0.176 0.328
#> SRR1202565 2 0.7352 0.30183 0.000 0.496 0.176 0.328
#> SRR1202564 2 0.7352 0.30183 0.000 0.496 0.176 0.328
#> SRR1202649 3 0.7812 0.35458 0.000 0.264 0.408 0.328
#> SRR1202650 3 0.7883 0.31233 0.000 0.292 0.380 0.328
#> SRR1202651 2 0.7327 0.31563 0.000 0.504 0.176 0.320
#> SRR1202843 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1202845 3 0.5955 0.64578 0.000 0.056 0.616 0.328
#> SRR1202847 2 0.7669 0.16926 0.000 0.444 0.228 0.328
#> SRR1202846 2 0.7688 0.15765 0.000 0.440 0.232 0.328
#> SRR1202945 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203132 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1203131 3 0.4564 0.69930 0.000 0.000 0.672 0.328
#> SRR1203133 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203827 4 0.4964 0.69252 0.000 0.004 0.380 0.616
#> SRR1203828 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203842 4 0.0000 0.50967 0.000 0.000 0.000 1.000
#> SRR1203843 1 0.0000 1.00000 1.000 0.000 0.000 0.000
#> SRR1203845 2 0.0188 0.83021 0.000 0.996 0.004 0.000
#> SRR1203844 2 0.2401 0.75175 0.000 0.904 0.092 0.004
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201590 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201593 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201592 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201617 2 0.0162 0.9832 0.000 0.996 0.004 0.000 0.000
#> SRR1201616 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201619 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201618 2 0.3237 0.8145 0.000 0.848 0.048 0.000 0.104
#> SRR1201620 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201621 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201623 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201622 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201624 4 0.2389 0.8576 0.000 0.000 0.004 0.880 0.116
#> SRR1201625 5 0.3391 0.7239 0.000 0.000 0.012 0.188 0.800
#> SRR1201626 4 0.2358 0.8697 0.104 0.000 0.008 0.888 0.000
#> SRR1201627 4 0.0000 0.9550 0.000 0.000 0.000 1.000 0.000
#> SRR1201628 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201629 5 0.4273 0.0985 0.000 0.000 0.448 0.000 0.552
#> SRR1201630 3 0.1836 0.9020 0.000 0.036 0.932 0.000 0.032
#> SRR1201631 3 0.1626 0.8990 0.000 0.044 0.940 0.000 0.016
#> SRR1201641 3 0.1544 0.8866 0.000 0.068 0.932 0.000 0.000
#> SRR1201640 3 0.1670 0.8969 0.000 0.052 0.936 0.000 0.012
#> SRR1201643 5 0.3177 0.6641 0.000 0.000 0.208 0.000 0.792
#> SRR1201644 5 0.3336 0.6299 0.000 0.000 0.228 0.000 0.772
#> SRR1201661 3 0.1484 0.8965 0.000 0.048 0.944 0.000 0.008
#> SRR1201662 3 0.3661 0.5984 0.000 0.276 0.724 0.000 0.000
#> SRR1201663 5 0.0000 0.9493 0.000 0.000 0.000 0.000 1.000
#> SRR1201664 5 0.0000 0.9493 0.000 0.000 0.000 0.000 1.000
#> SRR1201665 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201666 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201667 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201668 5 0.0000 0.9493 0.000 0.000 0.000 0.000 1.000
#> SRR1201670 5 0.0000 0.9493 0.000 0.000 0.000 0.000 1.000
#> SRR1201669 5 0.0000 0.9493 0.000 0.000 0.000 0.000 1.000
#> SRR1201673 3 0.3274 0.7213 0.000 0.220 0.780 0.000 0.000
#> SRR1201672 3 0.3242 0.7267 0.000 0.216 0.784 0.000 0.000
#> SRR1201671 3 0.3476 0.8434 0.000 0.076 0.836 0.000 0.088
#> SRR1201677 3 0.3366 0.7037 0.000 0.232 0.768 0.000 0.000
#> SRR1201676 3 0.3143 0.7425 0.000 0.204 0.796 0.000 0.000
#> SRR1201675 3 0.3274 0.7215 0.000 0.220 0.780 0.000 0.000
#> SRR1201674 3 0.3424 0.6915 0.000 0.240 0.760 0.000 0.000
#> SRR1201678 3 0.3274 0.7213 0.000 0.220 0.780 0.000 0.000
#> SRR1201682 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201683 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201680 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201681 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201679 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201686 5 0.0000 0.9493 0.000 0.000 0.000 0.000 1.000
#> SRR1201687 5 0.0000 0.9493 0.000 0.000 0.000 0.000 1.000
#> SRR1201688 5 0.0000 0.9493 0.000 0.000 0.000 0.000 1.000
#> SRR1201689 5 0.0000 0.9493 0.000 0.000 0.000 0.000 1.000
#> SRR1201685 5 0.0000 0.9493 0.000 0.000 0.000 0.000 1.000
#> SRR1201692 3 0.1544 0.8988 0.000 0.000 0.932 0.000 0.068
#> SRR1201691 3 0.1544 0.8988 0.000 0.000 0.932 0.000 0.068
#> SRR1201690 3 0.1544 0.8988 0.000 0.000 0.932 0.000 0.068
#> SRR1201696 3 0.1544 0.8988 0.000 0.000 0.932 0.000 0.068
#> SRR1201695 3 0.1544 0.8988 0.000 0.000 0.932 0.000 0.068
#> SRR1201694 3 0.1544 0.8988 0.000 0.000 0.932 0.000 0.068
#> SRR1201693 3 0.1544 0.8988 0.000 0.000 0.932 0.000 0.068
#> SRR1201697 3 0.1544 0.8988 0.000 0.000 0.932 0.000 0.068
#> SRR1201698 3 0.1544 0.8988 0.000 0.000 0.932 0.000 0.068
#> SRR1201700 3 0.2516 0.8481 0.000 0.000 0.860 0.000 0.140
#> SRR1201708 3 0.1608 0.8972 0.000 0.000 0.928 0.000 0.072
#> SRR1201707 3 0.1608 0.8972 0.000 0.000 0.928 0.000 0.072
#> SRR1201706 3 0.1671 0.8955 0.000 0.000 0.924 0.000 0.076
#> SRR1201702 3 0.1608 0.8972 0.000 0.000 0.928 0.000 0.072
#> SRR1201705 3 0.1544 0.8988 0.000 0.000 0.932 0.000 0.068
#> SRR1201701 3 0.1732 0.8929 0.000 0.000 0.920 0.000 0.080
#> SRR1201704 3 0.1608 0.8972 0.000 0.000 0.928 0.000 0.072
#> SRR1201703 3 0.1671 0.8953 0.000 0.000 0.924 0.000 0.076
#> SRR1201716 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201715 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201717 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201712 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201709 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201711 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201714 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201713 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201710 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201719 3 0.1341 0.8927 0.000 0.056 0.944 0.000 0.000
#> SRR1201718 3 0.1557 0.8962 0.000 0.052 0.940 0.000 0.008
#> SRR1201721 3 0.1544 0.8988 0.000 0.000 0.932 0.000 0.068
#> SRR1201720 3 0.1544 0.8988 0.000 0.000 0.932 0.000 0.068
#> SRR1201723 5 0.0000 0.9493 0.000 0.000 0.000 0.000 1.000
#> SRR1201722 5 0.0000 0.9493 0.000 0.000 0.000 0.000 1.000
#> SRR1201725 3 0.1522 0.8980 0.000 0.044 0.944 0.000 0.012
#> SRR1201724 3 0.1661 0.9024 0.000 0.024 0.940 0.000 0.036
#> SRR1201726 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201727 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201731 3 0.2690 0.8324 0.000 0.000 0.844 0.000 0.156
#> SRR1201730 3 0.3039 0.7905 0.000 0.000 0.808 0.000 0.192
#> SRR1201734 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201733 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201736 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201737 2 0.0290 0.9831 0.000 0.992 0.008 0.000 0.000
#> SRR1201739 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201738 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201742 2 0.3800 0.7689 0.000 0.812 0.108 0.000 0.080
#> SRR1201743 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201745 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201744 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201749 2 0.0162 0.9832 0.000 0.996 0.004 0.000 0.000
#> SRR1201750 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201752 3 0.2605 0.8404 0.000 0.000 0.852 0.000 0.148
#> SRR1201751 3 0.2690 0.8324 0.000 0.000 0.844 0.000 0.156
#> SRR1201754 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201753 2 0.1410 0.9280 0.000 0.940 0.060 0.000 0.000
#> SRR1201758 5 0.1908 0.8655 0.000 0.000 0.000 0.092 0.908
#> SRR1201759 5 0.0000 0.9493 0.000 0.000 0.000 0.000 1.000
#> SRR1201760 5 0.0794 0.9252 0.000 0.000 0.028 0.000 0.972
#> SRR1201761 5 0.2127 0.8190 0.000 0.000 0.108 0.000 0.892
#> SRR1201763 4 0.0000 0.9550 0.000 0.000 0.000 1.000 0.000
#> SRR1201762 4 0.0000 0.9550 0.000 0.000 0.000 1.000 0.000
#> SRR1201764 3 0.1701 0.9025 0.000 0.016 0.936 0.000 0.048
#> SRR1201766 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201768 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201769 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201767 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201770 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201771 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201772 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201773 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201774 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201786 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201784 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201785 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201778 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201779 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201781 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201780 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201783 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201782 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201798 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201797 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201796 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201795 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201799 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201794 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201793 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201792 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1201791 2 0.0162 0.9832 0.000 0.996 0.004 0.000 0.000
#> SRR1201807 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201808 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201803 2 0.0162 0.9832 0.000 0.996 0.004 0.000 0.000
#> SRR1201804 2 0.0162 0.9832 0.000 0.996 0.004 0.000 0.000
#> SRR1201805 2 0.0290 0.9831 0.000 0.992 0.008 0.000 0.000
#> SRR1201806 2 0.0162 0.9832 0.000 0.996 0.004 0.000 0.000
#> SRR1201801 2 0.0162 0.9832 0.000 0.996 0.004 0.000 0.000
#> SRR1201802 2 0.0162 0.9832 0.000 0.996 0.004 0.000 0.000
#> SRR1201800 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201814 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201816 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201815 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201819 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201820 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201813 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201817 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201818 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1201825 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201827 3 0.1341 0.8927 0.000 0.056 0.944 0.000 0.000
#> SRR1201828 3 0.1341 0.8927 0.000 0.056 0.944 0.000 0.000
#> SRR1201826 3 0.1626 0.9026 0.000 0.016 0.940 0.000 0.044
#> SRR1201829 3 0.1341 0.8927 0.000 0.056 0.944 0.000 0.000
#> SRR1201830 3 0.1341 0.8927 0.000 0.056 0.944 0.000 0.000
#> SRR1201831 3 0.1430 0.8949 0.000 0.052 0.944 0.000 0.004
#> SRR1201832 3 0.1341 0.8927 0.000 0.056 0.944 0.000 0.000
#> SRR1201833 3 0.1341 0.8927 0.000 0.056 0.944 0.000 0.000
#> SRR1201865 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201866 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201867 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201861 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201862 5 0.0290 0.9478 0.000 0.000 0.008 0.000 0.992
#> SRR1201863 5 0.0404 0.9435 0.000 0.000 0.012 0.000 0.988
#> SRR1201859 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201864 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201860 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201873 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201871 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201872 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1201980 3 0.1544 0.8988 0.000 0.000 0.932 0.000 0.068
#> SRR1201979 3 0.1544 0.8988 0.000 0.000 0.932 0.000 0.068
#> SRR1201982 3 0.1628 0.9012 0.000 0.008 0.936 0.000 0.056
#> SRR1201981 3 0.1544 0.8988 0.000 0.000 0.932 0.000 0.068
#> SRR1201998 3 0.2424 0.8552 0.000 0.000 0.868 0.000 0.132
#> SRR1201996 3 0.2690 0.8324 0.000 0.000 0.844 0.000 0.156
#> SRR1201997 3 0.1648 0.9026 0.000 0.020 0.940 0.000 0.040
#> SRR1202005 3 0.2280 0.8355 0.000 0.120 0.880 0.000 0.000
#> SRR1202006 3 0.4273 0.2461 0.000 0.448 0.552 0.000 0.000
#> SRR1202088 5 0.3942 0.4864 0.000 0.260 0.012 0.000 0.728
#> SRR1202087 5 0.0162 0.9515 0.000 0.000 0.004 0.000 0.996
#> SRR1202093 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1202092 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1202288 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1202289 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1202299 2 0.0162 0.9832 0.000 0.996 0.004 0.000 0.000
#> SRR1202298 2 0.0000 0.9827 0.000 1.000 0.000 0.000 0.000
#> SRR1202303 4 0.0000 0.9550 0.000 0.000 0.000 1.000 0.000
#> SRR1202372 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1202371 2 0.0404 0.9829 0.000 0.988 0.012 0.000 0.000
#> SRR1202563 3 0.1544 0.8863 0.000 0.068 0.932 0.000 0.000
#> SRR1202565 3 0.1544 0.8863 0.000 0.068 0.932 0.000 0.000
#> SRR1202564 3 0.1544 0.8863 0.000 0.068 0.932 0.000 0.000
#> SRR1202649 3 0.1341 0.8927 0.000 0.056 0.944 0.000 0.000
#> SRR1202650 3 0.1478 0.8887 0.000 0.064 0.936 0.000 0.000
#> SRR1202651 3 0.1908 0.8675 0.000 0.092 0.908 0.000 0.000
#> SRR1202843 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1202844 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1202845 3 0.1830 0.9027 0.000 0.028 0.932 0.000 0.040
#> SRR1202847 3 0.1697 0.8960 0.000 0.060 0.932 0.000 0.008
#> SRR1202846 3 0.1697 0.8960 0.000 0.060 0.932 0.000 0.008
#> SRR1202945 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1202949 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1202977 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1202978 1 0.0290 0.9784 0.992 0.000 0.008 0.000 0.000
#> SRR1202979 1 0.0162 0.9776 0.996 0.000 0.004 0.000 0.000
#> SRR1202990 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1202999 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1203005 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203006 1 0.1121 0.9742 0.956 0.000 0.044 0.000 0.000
#> SRR1203007 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203009 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1203008 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1203010 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1203011 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1203025 1 0.0162 0.9776 0.996 0.000 0.004 0.000 0.000
#> SRR1203026 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1203027 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1203061 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1203089 1 0.0162 0.9786 0.996 0.000 0.004 0.000 0.000
#> SRR1203125 1 0.0609 0.9790 0.980 0.000 0.020 0.000 0.000
#> SRR1203128 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203129 1 0.0963 0.9763 0.964 0.000 0.036 0.000 0.000
#> SRR1203130 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203132 3 0.1544 0.8988 0.000 0.000 0.932 0.000 0.068
#> SRR1203131 3 0.1544 0.8988 0.000 0.000 0.932 0.000 0.068
#> SRR1203133 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203138 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203760 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203761 1 0.0162 0.9787 0.996 0.000 0.004 0.000 0.000
#> SRR1203770 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203771 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1203772 1 0.0510 0.9782 0.984 0.000 0.016 0.000 0.000
#> SRR1203773 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203774 1 0.1043 0.9775 0.960 0.000 0.040 0.000 0.000
#> SRR1203775 1 0.0609 0.9789 0.980 0.000 0.020 0.000 0.000
#> SRR1203800 1 0.0963 0.9782 0.964 0.000 0.036 0.000 0.000
#> SRR1203801 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203802 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203803 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203804 1 0.0510 0.9783 0.984 0.000 0.016 0.000 0.000
#> SRR1203805 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1203806 1 0.0404 0.9775 0.988 0.000 0.012 0.000 0.000
#> SRR1203807 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1203808 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203811 1 0.1043 0.9751 0.960 0.000 0.040 0.000 0.000
#> SRR1203812 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1203813 1 0.0162 0.9777 0.996 0.000 0.004 0.000 0.000
#> SRR1203814 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203815 1 0.0290 0.9789 0.992 0.000 0.008 0.000 0.000
#> SRR1203816 1 0.0510 0.9790 0.984 0.000 0.016 0.000 0.000
#> SRR1203817 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203818 1 0.0404 0.9787 0.988 0.000 0.012 0.000 0.000
#> SRR1203819 1 0.0510 0.9787 0.984 0.000 0.016 0.000 0.000
#> SRR1203822 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203823 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203824 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1203825 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203826 1 0.0404 0.9775 0.988 0.000 0.012 0.000 0.000
#> SRR1203827 4 0.1740 0.9097 0.000 0.000 0.056 0.932 0.012
#> SRR1203828 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1203829 1 0.0404 0.9790 0.988 0.000 0.012 0.000 0.000
#> SRR1203830 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203831 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1203832 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1203833 1 0.0404 0.9775 0.988 0.000 0.012 0.000 0.000
#> SRR1203834 1 0.0404 0.9789 0.988 0.000 0.012 0.000 0.000
#> SRR1203835 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203836 1 0.0963 0.9762 0.964 0.000 0.036 0.000 0.000
#> SRR1203837 1 0.0290 0.9767 0.992 0.000 0.008 0.000 0.000
#> SRR1203838 1 0.0794 0.9783 0.972 0.000 0.028 0.000 0.000
#> SRR1203839 1 0.1197 0.9735 0.952 0.000 0.048 0.000 0.000
#> SRR1203842 4 0.0000 0.9550 0.000 0.000 0.000 1.000 0.000
#> SRR1203843 1 0.0880 0.9766 0.968 0.000 0.032 0.000 0.000
#> SRR1203845 2 0.1792 0.8987 0.000 0.916 0.084 0.000 0.000
#> SRR1203844 2 0.3949 0.4845 0.000 0.668 0.332 0.000 0.000
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201590 2 0.0363 0.852 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1201593 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201592 2 0.0458 0.850 0.000 0.984 0.000 0.000 0.000 0.016
#> SRR1201617 2 0.0000 0.855 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201616 2 0.0260 0.853 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1201619 2 0.1588 0.805 0.000 0.924 0.004 0.000 0.000 0.072
#> SRR1201618 2 0.4420 0.700 0.000 0.760 0.036 0.000 0.088 0.116
#> SRR1201620 2 0.3961 -0.314 0.000 0.556 0.004 0.000 0.000 0.440
#> SRR1201621 6 0.3714 0.778 0.000 0.340 0.004 0.000 0.000 0.656
#> SRR1201623 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201622 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201624 4 0.1910 0.847 0.000 0.000 0.000 0.892 0.108 0.000
#> SRR1201625 5 0.2933 0.721 0.000 0.000 0.004 0.200 0.796 0.000
#> SRR1201626 4 0.2517 0.839 0.100 0.000 0.008 0.876 0.000 0.016
#> SRR1201627 4 0.0000 0.947 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201628 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201629 5 0.3843 0.126 0.000 0.000 0.452 0.000 0.548 0.000
#> SRR1201630 3 0.0837 0.932 0.000 0.020 0.972 0.000 0.004 0.004
#> SRR1201631 3 0.0692 0.930 0.000 0.020 0.976 0.000 0.000 0.004
#> SRR1201641 3 0.1285 0.915 0.000 0.052 0.944 0.000 0.000 0.004
#> SRR1201640 3 0.1082 0.923 0.000 0.040 0.956 0.000 0.000 0.004
#> SRR1201643 5 0.2854 0.664 0.000 0.000 0.208 0.000 0.792 0.000
#> SRR1201644 5 0.2996 0.629 0.000 0.000 0.228 0.000 0.772 0.000
#> SRR1201661 3 0.0713 0.929 0.000 0.028 0.972 0.000 0.000 0.000
#> SRR1201662 3 0.3290 0.641 0.000 0.252 0.744 0.000 0.000 0.004
#> SRR1201663 5 0.0000 0.950 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1201664 5 0.0000 0.950 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1201665 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201666 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201667 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201668 5 0.0000 0.950 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1201670 5 0.0000 0.950 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1201669 5 0.0000 0.950 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1201673 3 0.2883 0.738 0.000 0.212 0.788 0.000 0.000 0.000
#> SRR1201672 3 0.2854 0.744 0.000 0.208 0.792 0.000 0.000 0.000
#> SRR1201671 3 0.2912 0.852 0.000 0.076 0.852 0.000 0.072 0.000
#> SRR1201677 3 0.2996 0.715 0.000 0.228 0.772 0.000 0.000 0.000
#> SRR1201676 3 0.2762 0.762 0.000 0.196 0.804 0.000 0.000 0.000
#> SRR1201675 3 0.2912 0.734 0.000 0.216 0.784 0.000 0.000 0.000
#> SRR1201674 3 0.3050 0.703 0.000 0.236 0.764 0.000 0.000 0.000
#> SRR1201678 3 0.2912 0.733 0.000 0.216 0.784 0.000 0.000 0.000
#> SRR1201682 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201683 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201680 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201681 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201679 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201686 5 0.0000 0.950 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1201687 5 0.0000 0.950 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1201688 5 0.0000 0.950 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1201689 5 0.0000 0.950 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1201685 5 0.0000 0.950 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1201692 3 0.0632 0.933 0.000 0.000 0.976 0.000 0.024 0.000
#> SRR1201691 3 0.0632 0.933 0.000 0.000 0.976 0.000 0.024 0.000
#> SRR1201690 3 0.0632 0.933 0.000 0.000 0.976 0.000 0.024 0.000
#> SRR1201696 3 0.0632 0.933 0.000 0.000 0.976 0.000 0.024 0.000
#> SRR1201695 3 0.0632 0.933 0.000 0.000 0.976 0.000 0.024 0.000
#> SRR1201694 3 0.0632 0.933 0.000 0.000 0.976 0.000 0.024 0.000
#> SRR1201693 3 0.0632 0.933 0.000 0.000 0.976 0.000 0.024 0.000
#> SRR1201697 3 0.0632 0.933 0.000 0.000 0.976 0.000 0.024 0.000
#> SRR1201698 3 0.0632 0.933 0.000 0.000 0.976 0.000 0.024 0.000
#> SRR1201700 3 0.1814 0.879 0.000 0.000 0.900 0.000 0.100 0.000
#> SRR1201708 3 0.0713 0.932 0.000 0.000 0.972 0.000 0.028 0.000
#> SRR1201707 3 0.0713 0.932 0.000 0.000 0.972 0.000 0.028 0.000
#> SRR1201706 3 0.0790 0.930 0.000 0.000 0.968 0.000 0.032 0.000
#> SRR1201702 3 0.0713 0.932 0.000 0.000 0.972 0.000 0.028 0.000
#> SRR1201705 3 0.0632 0.933 0.000 0.000 0.976 0.000 0.024 0.000
#> SRR1201701 3 0.0865 0.928 0.000 0.000 0.964 0.000 0.036 0.000
#> SRR1201704 3 0.0713 0.932 0.000 0.000 0.972 0.000 0.028 0.000
#> SRR1201703 3 0.0790 0.930 0.000 0.000 0.968 0.000 0.032 0.000
#> SRR1201716 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201715 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201717 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201712 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201709 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201711 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201714 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201713 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201710 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201719 3 0.0713 0.929 0.000 0.028 0.972 0.000 0.000 0.000
#> SRR1201718 3 0.0790 0.927 0.000 0.032 0.968 0.000 0.000 0.000
#> SRR1201721 3 0.0632 0.933 0.000 0.000 0.976 0.000 0.024 0.000
#> SRR1201720 3 0.0632 0.933 0.000 0.000 0.976 0.000 0.024 0.000
#> SRR1201723 5 0.0000 0.950 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1201722 5 0.0000 0.950 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1201725 3 0.0632 0.930 0.000 0.024 0.976 0.000 0.000 0.000
#> SRR1201724 3 0.0622 0.933 0.000 0.012 0.980 0.000 0.008 0.000
#> SRR1201726 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201727 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201731 3 0.2135 0.850 0.000 0.000 0.872 0.000 0.128 0.000
#> SRR1201730 3 0.2664 0.781 0.000 0.000 0.816 0.000 0.184 0.000
#> SRR1201734 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201733 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201736 2 0.1610 0.826 0.000 0.916 0.000 0.000 0.000 0.084
#> SRR1201737 2 0.0146 0.854 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1201739 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201738 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201742 2 0.3325 0.665 0.000 0.820 0.096 0.000 0.084 0.000
#> SRR1201743 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201745 2 0.3999 -0.492 0.000 0.500 0.004 0.000 0.000 0.496
#> SRR1201744 2 0.1958 0.750 0.000 0.896 0.004 0.000 0.000 0.100
#> SRR1201749 2 0.1910 0.812 0.000 0.892 0.000 0.000 0.000 0.108
#> SRR1201750 2 0.1267 0.834 0.000 0.940 0.000 0.000 0.000 0.060
#> SRR1201752 3 0.2003 0.863 0.000 0.000 0.884 0.000 0.116 0.000
#> SRR1201751 3 0.2092 0.855 0.000 0.000 0.876 0.000 0.124 0.000
#> SRR1201754 6 0.3699 0.780 0.000 0.336 0.004 0.000 0.000 0.660
#> SRR1201753 6 0.3861 0.766 0.000 0.352 0.008 0.000 0.000 0.640
#> SRR1201758 5 0.1714 0.867 0.000 0.000 0.000 0.092 0.908 0.000
#> SRR1201759 5 0.0000 0.950 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1201760 5 0.0713 0.926 0.000 0.000 0.028 0.000 0.972 0.000
#> SRR1201761 5 0.1910 0.820 0.000 0.000 0.108 0.000 0.892 0.000
#> SRR1201763 4 0.0000 0.947 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201762 4 0.0000 0.947 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201764 3 0.0692 0.934 0.000 0.004 0.976 0.000 0.020 0.000
#> SRR1201766 2 0.2996 0.743 0.000 0.772 0.000 0.000 0.000 0.228
#> SRR1201768 2 0.2996 0.743 0.000 0.772 0.000 0.000 0.000 0.228
#> SRR1201769 2 0.2996 0.743 0.000 0.772 0.000 0.000 0.000 0.228
#> SRR1201767 2 0.2996 0.743 0.000 0.772 0.000 0.000 0.000 0.228
#> SRR1201770 2 0.2996 0.743 0.000 0.772 0.000 0.000 0.000 0.228
#> SRR1201771 2 0.2996 0.743 0.000 0.772 0.000 0.000 0.000 0.228
#> SRR1201772 2 0.2996 0.743 0.000 0.772 0.000 0.000 0.000 0.228
#> SRR1201773 2 0.2996 0.743 0.000 0.772 0.000 0.000 0.000 0.228
#> SRR1201774 2 0.2996 0.743 0.000 0.772 0.000 0.000 0.000 0.228
#> SRR1201786 2 0.2996 0.743 0.000 0.772 0.000 0.000 0.000 0.228
#> SRR1201784 2 0.2996 0.743 0.000 0.772 0.000 0.000 0.000 0.228
#> SRR1201785 2 0.2996 0.743 0.000 0.772 0.000 0.000 0.000 0.228
#> SRR1201778 2 0.2996 0.743 0.000 0.772 0.000 0.000 0.000 0.228
#> SRR1201779 2 0.2996 0.743 0.000 0.772 0.000 0.000 0.000 0.228
#> SRR1201781 2 0.2996 0.743 0.000 0.772 0.000 0.000 0.000 0.228
#> SRR1201780 2 0.2996 0.743 0.000 0.772 0.000 0.000 0.000 0.228
#> SRR1201783 2 0.2996 0.743 0.000 0.772 0.000 0.000 0.000 0.228
#> SRR1201782 2 0.2996 0.743 0.000 0.772 0.000 0.000 0.000 0.228
#> SRR1201798 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201797 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201796 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201795 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201799 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201794 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201793 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201792 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1201791 2 0.0363 0.852 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1201807 6 0.3515 0.799 0.000 0.324 0.000 0.000 0.000 0.676
#> SRR1201808 6 0.3515 0.799 0.000 0.324 0.000 0.000 0.000 0.676
#> SRR1201803 6 0.3499 0.800 0.000 0.320 0.000 0.000 0.000 0.680
#> SRR1201804 6 0.3515 0.799 0.000 0.324 0.000 0.000 0.000 0.676
#> SRR1201805 6 0.3515 0.799 0.000 0.324 0.000 0.000 0.000 0.676
#> SRR1201806 6 0.3499 0.800 0.000 0.320 0.000 0.000 0.000 0.680
#> SRR1201801 6 0.3499 0.800 0.000 0.320 0.000 0.000 0.000 0.680
#> SRR1201802 6 0.3515 0.799 0.000 0.324 0.000 0.000 0.000 0.676
#> SRR1201800 6 0.1957 0.756 0.000 0.112 0.000 0.000 0.000 0.888
#> SRR1201814 6 0.1957 0.756 0.000 0.112 0.000 0.000 0.000 0.888
#> SRR1201816 6 0.1957 0.756 0.000 0.112 0.000 0.000 0.000 0.888
#> SRR1201815 6 0.1957 0.756 0.000 0.112 0.000 0.000 0.000 0.888
#> SRR1201819 6 0.1957 0.756 0.000 0.112 0.000 0.000 0.000 0.888
#> SRR1201820 6 0.1957 0.756 0.000 0.112 0.000 0.000 0.000 0.888
#> SRR1201813 6 0.1957 0.756 0.000 0.112 0.000 0.000 0.000 0.888
#> SRR1201817 6 0.1957 0.756 0.000 0.112 0.000 0.000 0.000 0.888
#> SRR1201818 6 0.1957 0.756 0.000 0.112 0.000 0.000 0.000 0.888
#> SRR1201825 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201827 3 0.0547 0.931 0.000 0.020 0.980 0.000 0.000 0.000
#> SRR1201828 3 0.0547 0.931 0.000 0.020 0.980 0.000 0.000 0.000
#> SRR1201826 3 0.0622 0.933 0.000 0.012 0.980 0.000 0.008 0.000
#> SRR1201829 3 0.0547 0.931 0.000 0.020 0.980 0.000 0.000 0.000
#> SRR1201830 3 0.0547 0.931 0.000 0.020 0.980 0.000 0.000 0.000
#> SRR1201831 3 0.0547 0.931 0.000 0.020 0.980 0.000 0.000 0.000
#> SRR1201832 3 0.0547 0.931 0.000 0.020 0.980 0.000 0.000 0.000
#> SRR1201833 3 0.0547 0.931 0.000 0.020 0.980 0.000 0.000 0.000
#> SRR1201865 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201866 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201867 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201861 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201862 5 0.0260 0.948 0.000 0.000 0.008 0.000 0.992 0.000
#> SRR1201863 5 0.0363 0.944 0.000 0.000 0.012 0.000 0.988 0.000
#> SRR1201859 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201864 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201860 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201873 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201871 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201872 5 0.0146 0.952 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201980 3 0.0692 0.933 0.000 0.004 0.976 0.000 0.020 0.000
#> SRR1201979 3 0.0632 0.933 0.000 0.000 0.976 0.000 0.024 0.000
#> SRR1201982 3 0.0622 0.933 0.000 0.012 0.980 0.000 0.008 0.000
#> SRR1201981 3 0.0692 0.933 0.000 0.004 0.976 0.000 0.020 0.000
#> SRR1201998 3 0.2070 0.875 0.000 0.000 0.892 0.000 0.100 0.008
#> SRR1201996 3 0.2389 0.845 0.000 0.000 0.864 0.000 0.128 0.008
#> SRR1201997 3 0.0820 0.931 0.000 0.000 0.972 0.000 0.016 0.012
#> SRR1202005 3 0.1814 0.868 0.000 0.100 0.900 0.000 0.000 0.000
#> SRR1202006 6 0.5662 0.297 0.000 0.156 0.384 0.000 0.000 0.460
#> SRR1202088 5 0.3534 0.504 0.000 0.276 0.008 0.000 0.716 0.000
#> SRR1202087 5 0.0260 0.949 0.000 0.000 0.008 0.000 0.992 0.000
#> SRR1202093 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1202092 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1202288 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1202289 2 0.0146 0.856 0.000 0.996 0.004 0.000 0.000 0.000
#> SRR1202299 6 0.3464 0.800 0.000 0.312 0.000 0.000 0.000 0.688
#> SRR1202298 6 0.2219 0.764 0.000 0.136 0.000 0.000 0.000 0.864
#> SRR1202303 4 0.0000 0.947 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1202372 2 0.0291 0.854 0.000 0.992 0.004 0.000 0.000 0.004
#> SRR1202371 2 0.0405 0.851 0.000 0.988 0.004 0.000 0.000 0.008
#> SRR1202563 3 0.1075 0.919 0.000 0.048 0.952 0.000 0.000 0.000
#> SRR1202565 3 0.1075 0.919 0.000 0.048 0.952 0.000 0.000 0.000
#> SRR1202564 3 0.1075 0.919 0.000 0.048 0.952 0.000 0.000 0.000
#> SRR1202649 3 0.0547 0.931 0.000 0.020 0.980 0.000 0.000 0.000
#> SRR1202650 3 0.1082 0.923 0.000 0.040 0.956 0.000 0.000 0.004
#> SRR1202651 6 0.4639 0.469 0.000 0.084 0.256 0.000 0.000 0.660
#> SRR1202843 1 0.2121 0.940 0.892 0.000 0.012 0.000 0.000 0.096
#> SRR1202844 1 0.2121 0.940 0.892 0.000 0.012 0.000 0.000 0.096
#> SRR1202845 3 0.0976 0.928 0.000 0.008 0.968 0.000 0.008 0.016
#> SRR1202847 3 0.1049 0.919 0.000 0.008 0.960 0.000 0.000 0.032
#> SRR1202846 3 0.0972 0.921 0.000 0.008 0.964 0.000 0.000 0.028
#> SRR1202945 1 0.2121 0.940 0.892 0.000 0.012 0.000 0.000 0.096
#> SRR1202949 1 0.0717 0.944 0.976 0.000 0.008 0.000 0.000 0.016
#> SRR1202977 1 0.0717 0.944 0.976 0.000 0.008 0.000 0.000 0.016
#> SRR1202978 1 0.0692 0.953 0.976 0.000 0.004 0.000 0.000 0.020
#> SRR1202979 1 0.0603 0.949 0.980 0.000 0.004 0.000 0.000 0.016
#> SRR1202990 1 0.0717 0.944 0.976 0.000 0.008 0.000 0.000 0.016
#> SRR1202999 1 0.0717 0.950 0.976 0.000 0.008 0.000 0.000 0.016
#> SRR1203005 1 0.2121 0.940 0.892 0.000 0.012 0.000 0.000 0.096
#> SRR1203006 1 0.2070 0.941 0.896 0.000 0.012 0.000 0.000 0.092
#> SRR1203007 1 0.1967 0.944 0.904 0.000 0.012 0.000 0.000 0.084
#> SRR1203009 1 0.0717 0.944 0.976 0.000 0.008 0.000 0.000 0.016
#> SRR1203008 1 0.0717 0.944 0.976 0.000 0.008 0.000 0.000 0.016
#> SRR1203010 1 0.0717 0.944 0.976 0.000 0.008 0.000 0.000 0.016
#> SRR1203011 1 0.0622 0.946 0.980 0.000 0.008 0.000 0.000 0.012
#> SRR1203025 1 0.0508 0.947 0.984 0.000 0.004 0.000 0.000 0.012
#> SRR1203026 1 0.0622 0.946 0.980 0.000 0.008 0.000 0.000 0.012
#> SRR1203027 1 0.0717 0.944 0.976 0.000 0.008 0.000 0.000 0.016
#> SRR1203061 1 0.0717 0.944 0.976 0.000 0.008 0.000 0.000 0.016
#> SRR1203089 1 0.0865 0.953 0.964 0.000 0.000 0.000 0.000 0.036
#> SRR1203125 1 0.0891 0.954 0.968 0.000 0.008 0.000 0.000 0.024
#> SRR1203128 1 0.2121 0.940 0.892 0.000 0.012 0.000 0.000 0.096
#> SRR1203129 1 0.1700 0.947 0.916 0.000 0.004 0.000 0.000 0.080
#> SRR1203130 1 0.2121 0.940 0.892 0.000 0.012 0.000 0.000 0.096
#> SRR1203132 3 0.0632 0.933 0.000 0.000 0.976 0.000 0.024 0.000
#> SRR1203131 3 0.0632 0.933 0.000 0.000 0.976 0.000 0.024 0.000
#> SRR1203133 1 0.2121 0.940 0.892 0.000 0.012 0.000 0.000 0.096
#> SRR1203138 1 0.2121 0.940 0.892 0.000 0.012 0.000 0.000 0.096
#> SRR1203760 1 0.2070 0.941 0.896 0.000 0.012 0.000 0.000 0.092
#> SRR1203761 1 0.0937 0.953 0.960 0.000 0.000 0.000 0.000 0.040
#> SRR1203770 1 0.2121 0.940 0.892 0.000 0.012 0.000 0.000 0.096
#> SRR1203771 1 0.0622 0.948 0.980 0.000 0.008 0.000 0.000 0.012
#> SRR1203772 1 0.1074 0.951 0.960 0.000 0.012 0.000 0.000 0.028
#> SRR1203773 1 0.2121 0.940 0.892 0.000 0.012 0.000 0.000 0.096
#> SRR1203774 1 0.1594 0.952 0.932 0.000 0.016 0.000 0.000 0.052
#> SRR1203775 1 0.1124 0.950 0.956 0.000 0.008 0.000 0.000 0.036
#> SRR1203800 1 0.1480 0.953 0.940 0.000 0.020 0.000 0.000 0.040
#> SRR1203801 1 0.2121 0.940 0.892 0.000 0.012 0.000 0.000 0.096
#> SRR1203802 1 0.2070 0.941 0.896 0.000 0.012 0.000 0.000 0.092
#> SRR1203803 1 0.2019 0.942 0.900 0.000 0.012 0.000 0.000 0.088
#> SRR1203804 1 0.1049 0.949 0.960 0.000 0.008 0.000 0.000 0.032
#> SRR1203805 1 0.0717 0.944 0.976 0.000 0.008 0.000 0.000 0.016
#> SRR1203806 1 0.0622 0.950 0.980 0.000 0.008 0.000 0.000 0.012
#> SRR1203807 1 0.0520 0.947 0.984 0.000 0.008 0.000 0.000 0.008
#> SRR1203808 1 0.2121 0.940 0.892 0.000 0.012 0.000 0.000 0.096
#> SRR1203811 1 0.1701 0.948 0.920 0.000 0.008 0.000 0.000 0.072
#> SRR1203812 1 0.0717 0.944 0.976 0.000 0.008 0.000 0.000 0.016
#> SRR1203813 1 0.0692 0.951 0.976 0.000 0.004 0.000 0.000 0.020
#> SRR1203814 1 0.2121 0.940 0.892 0.000 0.012 0.000 0.000 0.096
#> SRR1203815 1 0.0777 0.953 0.972 0.000 0.004 0.000 0.000 0.024
#> SRR1203816 1 0.1124 0.953 0.956 0.000 0.008 0.000 0.000 0.036
#> SRR1203817 1 0.2070 0.942 0.896 0.000 0.012 0.000 0.000 0.092
#> SRR1203818 1 0.1082 0.953 0.956 0.000 0.004 0.000 0.000 0.040
#> SRR1203819 1 0.0937 0.953 0.960 0.000 0.000 0.000 0.000 0.040
#> SRR1203822 1 0.2070 0.942 0.896 0.000 0.012 0.000 0.000 0.092
#> SRR1203823 1 0.2121 0.940 0.892 0.000 0.012 0.000 0.000 0.096
#> SRR1203824 1 0.0891 0.947 0.968 0.000 0.008 0.000 0.000 0.024
#> SRR1203825 1 0.2121 0.940 0.892 0.000 0.012 0.000 0.000 0.096
#> SRR1203826 1 0.0806 0.950 0.972 0.000 0.008 0.000 0.000 0.020
#> SRR1203827 4 0.1333 0.899 0.000 0.000 0.048 0.944 0.008 0.000
#> SRR1203828 1 0.0622 0.946 0.980 0.000 0.008 0.000 0.000 0.012
#> SRR1203829 1 0.1049 0.953 0.960 0.000 0.008 0.000 0.000 0.032
#> SRR1203830 1 0.2121 0.940 0.892 0.000 0.012 0.000 0.000 0.096
#> SRR1203831 1 0.0717 0.944 0.976 0.000 0.008 0.000 0.000 0.016
#> SRR1203832 1 0.0717 0.944 0.976 0.000 0.008 0.000 0.000 0.016
#> SRR1203833 1 0.1049 0.949 0.960 0.000 0.008 0.000 0.000 0.032
#> SRR1203834 1 0.0777 0.952 0.972 0.000 0.004 0.000 0.000 0.024
#> SRR1203835 1 0.2121 0.940 0.892 0.000 0.012 0.000 0.000 0.096
#> SRR1203836 1 0.1701 0.949 0.920 0.000 0.008 0.000 0.000 0.072
#> SRR1203837 1 0.0622 0.946 0.980 0.000 0.008 0.000 0.000 0.012
#> SRR1203838 1 0.1434 0.952 0.940 0.000 0.012 0.000 0.000 0.048
#> SRR1203839 1 0.2070 0.941 0.896 0.000 0.012 0.000 0.000 0.092
#> SRR1203842 4 0.0000 0.947 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1203843 1 0.1644 0.949 0.920 0.000 0.004 0.000 0.000 0.076
#> SRR1203845 2 0.2301 0.753 0.000 0.884 0.096 0.000 0.000 0.020
#> SRR1203844 2 0.3607 0.324 0.000 0.652 0.348 0.000 0.000 0.000
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["SD", "mclust"]
# you can also extract it by
# res = res_list["SD:mclust"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'SD' method.
#> Subgroups are detected by 'mclust' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 2.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 0.948 0.979 0.3976 0.586 0.586
#> 3 3 0.763 0.939 0.941 0.2241 0.963 0.937
#> 4 4 0.675 0.768 0.877 0.3223 0.780 0.600
#> 5 5 0.583 0.594 0.757 0.1386 0.867 0.620
#> 6 6 0.621 0.576 0.705 0.0627 0.880 0.563
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 2
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0.000 0.999 0.000 1.000
#> SRR1201590 2 0.000 0.999 0.000 1.000
#> SRR1201593 2 0.000 0.999 0.000 1.000
#> SRR1201592 2 0.000 0.999 0.000 1.000
#> SRR1201617 2 0.000 0.999 0.000 1.000
#> SRR1201616 2 0.000 0.999 0.000 1.000
#> SRR1201619 2 0.000 0.999 0.000 1.000
#> SRR1201618 2 0.000 0.999 0.000 1.000
#> SRR1201620 2 0.000 0.999 0.000 1.000
#> SRR1201621 2 0.000 0.999 0.000 1.000
#> SRR1201623 2 0.000 0.999 0.000 1.000
#> SRR1201622 2 0.000 0.999 0.000 1.000
#> SRR1201624 1 0.996 0.246 0.536 0.464
#> SRR1201625 1 0.996 0.246 0.536 0.464
#> SRR1201626 1 0.996 0.246 0.536 0.464
#> SRR1201627 1 0.996 0.246 0.536 0.464
#> SRR1201628 2 0.000 0.999 0.000 1.000
#> SRR1201629 2 0.000 0.999 0.000 1.000
#> SRR1201630 2 0.000 0.999 0.000 1.000
#> SRR1201631 2 0.000 0.999 0.000 1.000
#> SRR1201641 2 0.000 0.999 0.000 1.000
#> SRR1201640 2 0.000 0.999 0.000 1.000
#> SRR1201643 2 0.000 0.999 0.000 1.000
#> SRR1201644 2 0.000 0.999 0.000 1.000
#> SRR1201661 2 0.000 0.999 0.000 1.000
#> SRR1201662 2 0.000 0.999 0.000 1.000
#> SRR1201663 2 0.000 0.999 0.000 1.000
#> SRR1201664 2 0.000 0.999 0.000 1.000
#> SRR1201665 2 0.000 0.999 0.000 1.000
#> SRR1201666 2 0.000 0.999 0.000 1.000
#> SRR1201667 2 0.000 0.999 0.000 1.000
#> SRR1201668 2 0.204 0.963 0.032 0.968
#> SRR1201670 2 0.000 0.999 0.000 1.000
#> SRR1201669 2 0.000 0.999 0.000 1.000
#> SRR1201673 2 0.000 0.999 0.000 1.000
#> SRR1201672 2 0.000 0.999 0.000 1.000
#> SRR1201671 2 0.000 0.999 0.000 1.000
#> SRR1201677 2 0.000 0.999 0.000 1.000
#> SRR1201676 2 0.000 0.999 0.000 1.000
#> SRR1201675 2 0.000 0.999 0.000 1.000
#> SRR1201674 2 0.000 0.999 0.000 1.000
#> SRR1201678 2 0.000 0.999 0.000 1.000
#> SRR1201682 2 0.000 0.999 0.000 1.000
#> SRR1201683 2 0.000 0.999 0.000 1.000
#> SRR1201680 2 0.000 0.999 0.000 1.000
#> SRR1201681 2 0.000 0.999 0.000 1.000
#> SRR1201679 2 0.000 0.999 0.000 1.000
#> SRR1201686 2 0.000 0.999 0.000 1.000
#> SRR1201687 2 0.000 0.999 0.000 1.000
#> SRR1201688 2 0.000 0.999 0.000 1.000
#> SRR1201689 2 0.000 0.999 0.000 1.000
#> SRR1201685 1 0.998 0.208 0.524 0.476
#> SRR1201692 2 0.000 0.999 0.000 1.000
#> SRR1201691 2 0.000 0.999 0.000 1.000
#> SRR1201690 2 0.000 0.999 0.000 1.000
#> SRR1201696 2 0.000 0.999 0.000 1.000
#> SRR1201695 2 0.000 0.999 0.000 1.000
#> SRR1201694 2 0.000 0.999 0.000 1.000
#> SRR1201693 2 0.000 0.999 0.000 1.000
#> SRR1201697 2 0.000 0.999 0.000 1.000
#> SRR1201698 2 0.000 0.999 0.000 1.000
#> SRR1201700 2 0.000 0.999 0.000 1.000
#> SRR1201708 2 0.000 0.999 0.000 1.000
#> SRR1201707 2 0.000 0.999 0.000 1.000
#> SRR1201706 2 0.000 0.999 0.000 1.000
#> SRR1201702 2 0.000 0.999 0.000 1.000
#> SRR1201705 2 0.000 0.999 0.000 1.000
#> SRR1201701 2 0.000 0.999 0.000 1.000
#> SRR1201704 2 0.000 0.999 0.000 1.000
#> SRR1201703 2 0.000 0.999 0.000 1.000
#> SRR1201716 2 0.000 0.999 0.000 1.000
#> SRR1201715 2 0.000 0.999 0.000 1.000
#> SRR1201717 2 0.000 0.999 0.000 1.000
#> SRR1201712 2 0.000 0.999 0.000 1.000
#> SRR1201709 2 0.000 0.999 0.000 1.000
#> SRR1201711 2 0.000 0.999 0.000 1.000
#> SRR1201714 2 0.000 0.999 0.000 1.000
#> SRR1201713 2 0.000 0.999 0.000 1.000
#> SRR1201710 2 0.000 0.999 0.000 1.000
#> SRR1201719 2 0.000 0.999 0.000 1.000
#> SRR1201718 2 0.000 0.999 0.000 1.000
#> SRR1201721 2 0.000 0.999 0.000 1.000
#> SRR1201720 2 0.000 0.999 0.000 1.000
#> SRR1201723 2 0.000 0.999 0.000 1.000
#> SRR1201722 2 0.000 0.999 0.000 1.000
#> SRR1201725 2 0.000 0.999 0.000 1.000
#> SRR1201724 2 0.000 0.999 0.000 1.000
#> SRR1201726 2 0.000 0.999 0.000 1.000
#> SRR1201727 2 0.000 0.999 0.000 1.000
#> SRR1201731 2 0.000 0.999 0.000 1.000
#> SRR1201730 2 0.000 0.999 0.000 1.000
#> SRR1201734 2 0.000 0.999 0.000 1.000
#> SRR1201733 2 0.000 0.999 0.000 1.000
#> SRR1201736 2 0.000 0.999 0.000 1.000
#> SRR1201737 2 0.000 0.999 0.000 1.000
#> SRR1201739 2 0.000 0.999 0.000 1.000
#> SRR1201738 2 0.000 0.999 0.000 1.000
#> SRR1201742 2 0.000 0.999 0.000 1.000
#> SRR1201743 2 0.000 0.999 0.000 1.000
#> SRR1201745 2 0.000 0.999 0.000 1.000
#> SRR1201744 2 0.506 0.862 0.112 0.888
#> SRR1201749 2 0.000 0.999 0.000 1.000
#> SRR1201750 2 0.000 0.999 0.000 1.000
#> SRR1201752 2 0.000 0.999 0.000 1.000
#> SRR1201751 2 0.000 0.999 0.000 1.000
#> SRR1201754 2 0.000 0.999 0.000 1.000
#> SRR1201753 2 0.000 0.999 0.000 1.000
#> SRR1201758 1 0.996 0.246 0.536 0.464
#> SRR1201759 1 0.998 0.208 0.524 0.476
#> SRR1201760 2 0.000 0.999 0.000 1.000
#> SRR1201761 2 0.000 0.999 0.000 1.000
#> SRR1201763 1 0.996 0.246 0.536 0.464
#> SRR1201762 1 0.996 0.246 0.536 0.464
#> SRR1201764 2 0.552 0.839 0.128 0.872
#> SRR1201766 2 0.000 0.999 0.000 1.000
#> SRR1201768 2 0.000 0.999 0.000 1.000
#> SRR1201769 2 0.000 0.999 0.000 1.000
#> SRR1201767 2 0.000 0.999 0.000 1.000
#> SRR1201770 2 0.000 0.999 0.000 1.000
#> SRR1201771 2 0.000 0.999 0.000 1.000
#> SRR1201772 2 0.000 0.999 0.000 1.000
#> SRR1201773 2 0.000 0.999 0.000 1.000
#> SRR1201774 2 0.000 0.999 0.000 1.000
#> SRR1201786 2 0.000 0.999 0.000 1.000
#> SRR1201784 2 0.000 0.999 0.000 1.000
#> SRR1201785 2 0.000 0.999 0.000 1.000
#> SRR1201778 2 0.000 0.999 0.000 1.000
#> SRR1201779 2 0.000 0.999 0.000 1.000
#> SRR1201781 2 0.000 0.999 0.000 1.000
#> SRR1201780 2 0.000 0.999 0.000 1.000
#> SRR1201783 2 0.000 0.999 0.000 1.000
#> SRR1201782 2 0.000 0.999 0.000 1.000
#> SRR1201798 2 0.000 0.999 0.000 1.000
#> SRR1201797 2 0.000 0.999 0.000 1.000
#> SRR1201796 2 0.000 0.999 0.000 1.000
#> SRR1201795 2 0.000 0.999 0.000 1.000
#> SRR1201799 2 0.000 0.999 0.000 1.000
#> SRR1201794 2 0.000 0.999 0.000 1.000
#> SRR1201793 2 0.000 0.999 0.000 1.000
#> SRR1201792 2 0.000 0.999 0.000 1.000
#> SRR1201791 2 0.000 0.999 0.000 1.000
#> SRR1201807 2 0.000 0.999 0.000 1.000
#> SRR1201808 2 0.000 0.999 0.000 1.000
#> SRR1201803 2 0.000 0.999 0.000 1.000
#> SRR1201804 2 0.000 0.999 0.000 1.000
#> SRR1201805 2 0.000 0.999 0.000 1.000
#> SRR1201806 2 0.000 0.999 0.000 1.000
#> SRR1201801 2 0.000 0.999 0.000 1.000
#> SRR1201802 2 0.000 0.999 0.000 1.000
#> SRR1201800 2 0.000 0.999 0.000 1.000
#> SRR1201814 2 0.000 0.999 0.000 1.000
#> SRR1201816 2 0.000 0.999 0.000 1.000
#> SRR1201815 2 0.000 0.999 0.000 1.000
#> SRR1201819 2 0.000 0.999 0.000 1.000
#> SRR1201820 2 0.000 0.999 0.000 1.000
#> SRR1201813 2 0.000 0.999 0.000 1.000
#> SRR1201817 2 0.000 0.999 0.000 1.000
#> SRR1201818 2 0.000 0.999 0.000 1.000
#> SRR1201825 2 0.000 0.999 0.000 1.000
#> SRR1201827 2 0.000 0.999 0.000 1.000
#> SRR1201828 2 0.000 0.999 0.000 1.000
#> SRR1201826 2 0.000 0.999 0.000 1.000
#> SRR1201829 2 0.000 0.999 0.000 1.000
#> SRR1201830 2 0.000 0.999 0.000 1.000
#> SRR1201831 2 0.000 0.999 0.000 1.000
#> SRR1201832 2 0.000 0.999 0.000 1.000
#> SRR1201833 2 0.000 0.999 0.000 1.000
#> SRR1201865 2 0.000 0.999 0.000 1.000
#> SRR1201866 2 0.000 0.999 0.000 1.000
#> SRR1201867 2 0.000 0.999 0.000 1.000
#> SRR1201861 2 0.000 0.999 0.000 1.000
#> SRR1201862 2 0.000 0.999 0.000 1.000
#> SRR1201863 2 0.000 0.999 0.000 1.000
#> SRR1201859 2 0.000 0.999 0.000 1.000
#> SRR1201864 2 0.000 0.999 0.000 1.000
#> SRR1201860 2 0.000 0.999 0.000 1.000
#> SRR1201873 2 0.000 0.999 0.000 1.000
#> SRR1201871 2 0.000 0.999 0.000 1.000
#> SRR1201872 2 0.000 0.999 0.000 1.000
#> SRR1201980 2 0.000 0.999 0.000 1.000
#> SRR1201979 2 0.000 0.999 0.000 1.000
#> SRR1201982 2 0.000 0.999 0.000 1.000
#> SRR1201981 2 0.000 0.999 0.000 1.000
#> SRR1201998 2 0.000 0.999 0.000 1.000
#> SRR1201996 2 0.000 0.999 0.000 1.000
#> SRR1201997 2 0.000 0.999 0.000 1.000
#> SRR1202005 2 0.000 0.999 0.000 1.000
#> SRR1202006 2 0.000 0.999 0.000 1.000
#> SRR1202088 2 0.000 0.999 0.000 1.000
#> SRR1202087 2 0.000 0.999 0.000 1.000
#> SRR1202093 2 0.000 0.999 0.000 1.000
#> SRR1202092 2 0.000 0.999 0.000 1.000
#> SRR1202288 2 0.000 0.999 0.000 1.000
#> SRR1202289 2 0.000 0.999 0.000 1.000
#> SRR1202299 2 0.000 0.999 0.000 1.000
#> SRR1202298 2 0.000 0.999 0.000 1.000
#> SRR1202303 1 0.996 0.246 0.536 0.464
#> SRR1202372 2 0.000 0.999 0.000 1.000
#> SRR1202371 2 0.000 0.999 0.000 1.000
#> SRR1202563 2 0.000 0.999 0.000 1.000
#> SRR1202565 2 0.000 0.999 0.000 1.000
#> SRR1202564 2 0.000 0.999 0.000 1.000
#> SRR1202649 2 0.000 0.999 0.000 1.000
#> SRR1202650 2 0.000 0.999 0.000 1.000
#> SRR1202651 2 0.000 0.999 0.000 1.000
#> SRR1202843 1 0.000 0.930 1.000 0.000
#> SRR1202844 1 0.000 0.930 1.000 0.000
#> SRR1202845 2 0.000 0.999 0.000 1.000
#> SRR1202847 2 0.000 0.999 0.000 1.000
#> SRR1202846 2 0.000 0.999 0.000 1.000
#> SRR1202945 1 0.000 0.930 1.000 0.000
#> SRR1202949 1 0.000 0.930 1.000 0.000
#> SRR1202977 1 0.000 0.930 1.000 0.000
#> SRR1202978 1 0.000 0.930 1.000 0.000
#> SRR1202979 1 0.000 0.930 1.000 0.000
#> SRR1202990 1 0.000 0.930 1.000 0.000
#> SRR1202999 1 0.000 0.930 1.000 0.000
#> SRR1203005 1 0.000 0.930 1.000 0.000
#> SRR1203006 1 0.000 0.930 1.000 0.000
#> SRR1203007 1 0.000 0.930 1.000 0.000
#> SRR1203009 1 0.000 0.930 1.000 0.000
#> SRR1203008 1 0.000 0.930 1.000 0.000
#> SRR1203010 1 0.000 0.930 1.000 0.000
#> SRR1203011 1 0.000 0.930 1.000 0.000
#> SRR1203025 1 0.000 0.930 1.000 0.000
#> SRR1203026 1 0.000 0.930 1.000 0.000
#> SRR1203027 1 0.000 0.930 1.000 0.000
#> SRR1203061 1 0.000 0.930 1.000 0.000
#> SRR1203089 1 0.000 0.930 1.000 0.000
#> SRR1203125 1 0.000 0.930 1.000 0.000
#> SRR1203128 1 0.000 0.930 1.000 0.000
#> SRR1203129 1 0.000 0.930 1.000 0.000
#> SRR1203130 1 0.000 0.930 1.000 0.000
#> SRR1203132 2 0.000 0.999 0.000 1.000
#> SRR1203131 2 0.000 0.999 0.000 1.000
#> SRR1203133 1 0.000 0.930 1.000 0.000
#> SRR1203138 1 0.000 0.930 1.000 0.000
#> SRR1203760 1 0.000 0.930 1.000 0.000
#> SRR1203761 1 0.000 0.930 1.000 0.000
#> SRR1203770 1 0.000 0.930 1.000 0.000
#> SRR1203771 1 0.000 0.930 1.000 0.000
#> SRR1203772 1 0.000 0.930 1.000 0.000
#> SRR1203773 1 0.000 0.930 1.000 0.000
#> SRR1203774 1 0.000 0.930 1.000 0.000
#> SRR1203775 1 0.000 0.930 1.000 0.000
#> SRR1203800 1 0.000 0.930 1.000 0.000
#> SRR1203801 1 0.000 0.930 1.000 0.000
#> SRR1203802 1 0.000 0.930 1.000 0.000
#> SRR1203803 1 0.000 0.930 1.000 0.000
#> SRR1203804 1 0.000 0.930 1.000 0.000
#> SRR1203805 1 0.000 0.930 1.000 0.000
#> SRR1203806 1 0.000 0.930 1.000 0.000
#> SRR1203807 1 0.000 0.930 1.000 0.000
#> SRR1203808 1 0.000 0.930 1.000 0.000
#> SRR1203811 1 0.000 0.930 1.000 0.000
#> SRR1203812 1 0.000 0.930 1.000 0.000
#> SRR1203813 1 0.000 0.930 1.000 0.000
#> SRR1203814 1 0.000 0.930 1.000 0.000
#> SRR1203815 1 0.000 0.930 1.000 0.000
#> SRR1203816 1 0.000 0.930 1.000 0.000
#> SRR1203817 1 0.000 0.930 1.000 0.000
#> SRR1203818 1 0.000 0.930 1.000 0.000
#> SRR1203819 1 0.000 0.930 1.000 0.000
#> SRR1203822 1 0.000 0.930 1.000 0.000
#> SRR1203823 1 0.000 0.930 1.000 0.000
#> SRR1203824 1 0.000 0.930 1.000 0.000
#> SRR1203825 1 0.000 0.930 1.000 0.000
#> SRR1203826 1 0.000 0.930 1.000 0.000
#> SRR1203827 1 0.996 0.246 0.536 0.464
#> SRR1203828 1 0.000 0.930 1.000 0.000
#> SRR1203829 1 0.000 0.930 1.000 0.000
#> SRR1203830 1 0.000 0.930 1.000 0.000
#> SRR1203831 1 0.000 0.930 1.000 0.000
#> SRR1203832 1 0.000 0.930 1.000 0.000
#> SRR1203833 1 0.000 0.930 1.000 0.000
#> SRR1203834 1 0.000 0.930 1.000 0.000
#> SRR1203835 1 0.000 0.930 1.000 0.000
#> SRR1203836 1 0.000 0.930 1.000 0.000
#> SRR1203837 1 0.000 0.930 1.000 0.000
#> SRR1203838 1 0.000 0.930 1.000 0.000
#> SRR1203839 1 0.000 0.930 1.000 0.000
#> SRR1203842 1 0.996 0.246 0.536 0.464
#> SRR1203843 1 0.000 0.930 1.000 0.000
#> SRR1203845 2 0.000 0.999 0.000 1.000
#> SRR1203844 2 0.000 0.999 0.000 1.000
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0.3752 0.904 0.000 0.856 0.144
#> SRR1201590 2 0.2625 0.927 0.000 0.916 0.084
#> SRR1201593 2 0.4002 0.895 0.000 0.840 0.160
#> SRR1201592 2 0.3941 0.898 0.000 0.844 0.156
#> SRR1201617 2 0.3941 0.899 0.000 0.844 0.156
#> SRR1201616 2 0.4002 0.895 0.000 0.840 0.160
#> SRR1201619 2 0.0237 0.941 0.000 0.996 0.004
#> SRR1201618 2 0.0424 0.941 0.000 0.992 0.008
#> SRR1201620 2 0.3816 0.903 0.000 0.852 0.148
#> SRR1201621 2 0.4002 0.895 0.000 0.840 0.160
#> SRR1201623 2 0.0237 0.940 0.000 0.996 0.004
#> SRR1201622 2 0.0237 0.940 0.000 0.996 0.004
#> SRR1201624 3 0.4702 0.914 0.212 0.000 0.788
#> SRR1201625 3 0.4702 0.914 0.212 0.000 0.788
#> SRR1201626 3 0.4796 0.914 0.220 0.000 0.780
#> SRR1201627 3 0.4796 0.914 0.220 0.000 0.780
#> SRR1201628 2 0.0237 0.940 0.000 0.996 0.004
#> SRR1201629 2 0.0424 0.940 0.000 0.992 0.008
#> SRR1201630 2 0.2448 0.930 0.000 0.924 0.076
#> SRR1201631 2 0.2878 0.921 0.000 0.904 0.096
#> SRR1201641 2 0.0892 0.941 0.000 0.980 0.020
#> SRR1201640 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201643 2 0.0424 0.940 0.000 0.992 0.008
#> SRR1201644 2 0.0424 0.940 0.000 0.992 0.008
#> SRR1201661 2 0.1289 0.940 0.000 0.968 0.032
#> SRR1201662 2 0.1964 0.935 0.000 0.944 0.056
#> SRR1201663 2 0.1015 0.938 0.008 0.980 0.012
#> SRR1201664 2 0.0661 0.940 0.004 0.988 0.008
#> SRR1201665 2 0.3340 0.914 0.000 0.880 0.120
#> SRR1201666 2 0.3038 0.920 0.000 0.896 0.104
#> SRR1201667 2 0.3038 0.920 0.000 0.896 0.104
#> SRR1201668 3 0.5945 0.671 0.024 0.236 0.740
#> SRR1201670 2 0.0237 0.940 0.000 0.996 0.004
#> SRR1201669 2 0.0237 0.940 0.000 0.996 0.004
#> SRR1201673 2 0.0237 0.941 0.000 0.996 0.004
#> SRR1201672 2 0.0237 0.941 0.000 0.996 0.004
#> SRR1201671 2 0.0237 0.941 0.000 0.996 0.004
#> SRR1201677 2 0.0237 0.941 0.000 0.996 0.004
#> SRR1201676 2 0.0237 0.941 0.000 0.996 0.004
#> SRR1201675 2 0.0237 0.941 0.000 0.996 0.004
#> SRR1201674 2 0.0237 0.941 0.000 0.996 0.004
#> SRR1201678 2 0.0237 0.941 0.000 0.996 0.004
#> SRR1201682 2 0.1643 0.937 0.000 0.956 0.044
#> SRR1201683 2 0.1643 0.937 0.000 0.956 0.044
#> SRR1201680 2 0.1643 0.937 0.000 0.956 0.044
#> SRR1201681 2 0.1643 0.937 0.000 0.956 0.044
#> SRR1201679 2 0.1411 0.937 0.000 0.964 0.036
#> SRR1201686 2 0.0848 0.939 0.008 0.984 0.008
#> SRR1201687 2 0.0848 0.939 0.008 0.984 0.008
#> SRR1201688 2 0.0848 0.939 0.008 0.984 0.008
#> SRR1201689 2 0.0848 0.939 0.008 0.984 0.008
#> SRR1201685 3 0.5627 0.897 0.188 0.032 0.780
#> SRR1201692 2 0.0424 0.940 0.000 0.992 0.008
#> SRR1201691 2 0.0424 0.940 0.000 0.992 0.008
#> SRR1201690 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201696 2 0.0424 0.940 0.000 0.992 0.008
#> SRR1201695 2 0.0424 0.940 0.000 0.992 0.008
#> SRR1201694 2 0.0424 0.940 0.000 0.992 0.008
#> SRR1201693 2 0.0424 0.940 0.000 0.992 0.008
#> SRR1201697 2 0.0424 0.940 0.000 0.992 0.008
#> SRR1201698 2 0.0424 0.940 0.000 0.992 0.008
#> SRR1201700 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201708 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201707 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201706 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201702 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201705 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201701 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201704 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201703 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201716 2 0.0592 0.939 0.000 0.988 0.012
#> SRR1201715 2 0.0592 0.939 0.000 0.988 0.012
#> SRR1201717 2 0.0592 0.939 0.000 0.988 0.012
#> SRR1201712 2 0.0592 0.939 0.000 0.988 0.012
#> SRR1201709 2 0.0237 0.940 0.000 0.996 0.004
#> SRR1201711 2 0.0592 0.939 0.000 0.988 0.012
#> SRR1201714 2 0.0592 0.939 0.000 0.988 0.012
#> SRR1201713 2 0.0592 0.939 0.000 0.988 0.012
#> SRR1201710 2 0.0592 0.939 0.000 0.988 0.012
#> SRR1201719 2 0.1753 0.937 0.000 0.952 0.048
#> SRR1201718 2 0.0424 0.941 0.000 0.992 0.008
#> SRR1201721 2 0.0424 0.940 0.000 0.992 0.008
#> SRR1201720 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201723 2 0.0237 0.940 0.000 0.996 0.004
#> SRR1201722 2 0.0661 0.940 0.004 0.988 0.008
#> SRR1201725 2 0.1643 0.938 0.000 0.956 0.044
#> SRR1201724 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201726 2 0.0237 0.940 0.000 0.996 0.004
#> SRR1201727 2 0.0424 0.940 0.000 0.992 0.008
#> SRR1201731 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201730 2 0.0424 0.940 0.000 0.992 0.008
#> SRR1201734 2 0.3816 0.902 0.000 0.852 0.148
#> SRR1201733 2 0.3340 0.914 0.000 0.880 0.120
#> SRR1201736 2 0.1163 0.936 0.000 0.972 0.028
#> SRR1201737 2 0.0237 0.941 0.000 0.996 0.004
#> SRR1201739 2 0.3116 0.918 0.000 0.892 0.108
#> SRR1201738 2 0.2165 0.932 0.000 0.936 0.064
#> SRR1201742 2 0.0237 0.941 0.000 0.996 0.004
#> SRR1201743 2 0.0237 0.941 0.000 0.996 0.004
#> SRR1201745 2 0.3038 0.922 0.000 0.896 0.104
#> SRR1201744 3 0.4565 0.802 0.064 0.076 0.860
#> SRR1201749 2 0.2261 0.932 0.000 0.932 0.068
#> SRR1201750 2 0.1529 0.939 0.000 0.960 0.040
#> SRR1201752 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201751 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201754 2 0.3879 0.900 0.000 0.848 0.152
#> SRR1201753 2 0.3619 0.907 0.000 0.864 0.136
#> SRR1201758 3 0.5109 0.912 0.212 0.008 0.780
#> SRR1201759 3 0.5743 0.885 0.172 0.044 0.784
#> SRR1201760 2 0.0237 0.940 0.000 0.996 0.004
#> SRR1201761 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201763 3 0.4796 0.914 0.220 0.000 0.780
#> SRR1201762 3 0.4796 0.914 0.220 0.000 0.780
#> SRR1201764 3 0.5243 0.802 0.072 0.100 0.828
#> SRR1201766 2 0.3941 0.897 0.000 0.844 0.156
#> SRR1201768 2 0.4002 0.894 0.000 0.840 0.160
#> SRR1201769 2 0.4062 0.892 0.000 0.836 0.164
#> SRR1201767 2 0.4002 0.894 0.000 0.840 0.160
#> SRR1201770 2 0.4062 0.892 0.000 0.836 0.164
#> SRR1201771 2 0.4121 0.890 0.000 0.832 0.168
#> SRR1201772 2 0.4002 0.894 0.000 0.840 0.160
#> SRR1201773 2 0.4062 0.892 0.000 0.836 0.164
#> SRR1201774 2 0.4002 0.894 0.000 0.840 0.160
#> SRR1201786 2 0.4291 0.883 0.000 0.820 0.180
#> SRR1201784 2 0.4291 0.883 0.000 0.820 0.180
#> SRR1201785 2 0.4291 0.883 0.000 0.820 0.180
#> SRR1201778 2 0.3619 0.907 0.000 0.864 0.136
#> SRR1201779 2 0.4291 0.883 0.000 0.820 0.180
#> SRR1201781 2 0.4235 0.886 0.000 0.824 0.176
#> SRR1201780 2 0.4235 0.886 0.000 0.824 0.176
#> SRR1201783 2 0.4291 0.883 0.000 0.820 0.180
#> SRR1201782 2 0.4291 0.883 0.000 0.820 0.180
#> SRR1201798 2 0.4002 0.895 0.000 0.840 0.160
#> SRR1201797 2 0.3941 0.898 0.000 0.844 0.156
#> SRR1201796 2 0.3879 0.900 0.000 0.848 0.152
#> SRR1201795 2 0.3941 0.898 0.000 0.844 0.156
#> SRR1201799 2 0.4002 0.895 0.000 0.840 0.160
#> SRR1201794 2 0.3941 0.898 0.000 0.844 0.156
#> SRR1201793 2 0.4002 0.895 0.000 0.840 0.160
#> SRR1201792 2 0.3816 0.902 0.000 0.852 0.148
#> SRR1201791 2 0.3412 0.912 0.000 0.876 0.124
#> SRR1201807 2 0.3816 0.902 0.000 0.852 0.148
#> SRR1201808 2 0.3816 0.902 0.000 0.852 0.148
#> SRR1201803 2 0.3816 0.902 0.000 0.852 0.148
#> SRR1201804 2 0.3816 0.902 0.000 0.852 0.148
#> SRR1201805 2 0.3816 0.902 0.000 0.852 0.148
#> SRR1201806 2 0.3816 0.902 0.000 0.852 0.148
#> SRR1201801 2 0.3816 0.902 0.000 0.852 0.148
#> SRR1201802 2 0.3816 0.902 0.000 0.852 0.148
#> SRR1201800 2 0.4062 0.893 0.000 0.836 0.164
#> SRR1201814 2 0.4452 0.873 0.000 0.808 0.192
#> SRR1201816 2 0.4452 0.873 0.000 0.808 0.192
#> SRR1201815 2 0.4452 0.873 0.000 0.808 0.192
#> SRR1201819 2 0.4452 0.873 0.000 0.808 0.192
#> SRR1201820 2 0.4452 0.873 0.000 0.808 0.192
#> SRR1201813 2 0.4062 0.893 0.000 0.836 0.164
#> SRR1201817 2 0.4452 0.873 0.000 0.808 0.192
#> SRR1201818 2 0.4452 0.873 0.000 0.808 0.192
#> SRR1201825 2 0.0237 0.941 0.000 0.996 0.004
#> SRR1201827 2 0.0892 0.941 0.000 0.980 0.020
#> SRR1201828 2 0.0892 0.941 0.000 0.980 0.020
#> SRR1201826 2 0.0424 0.941 0.000 0.992 0.008
#> SRR1201829 2 0.0892 0.941 0.000 0.980 0.020
#> SRR1201830 2 0.0892 0.941 0.000 0.980 0.020
#> SRR1201831 2 0.0747 0.941 0.000 0.984 0.016
#> SRR1201832 2 0.0892 0.941 0.000 0.980 0.020
#> SRR1201833 2 0.0892 0.941 0.000 0.980 0.020
#> SRR1201865 2 0.0592 0.939 0.000 0.988 0.012
#> SRR1201866 2 0.0592 0.939 0.000 0.988 0.012
#> SRR1201867 2 0.0592 0.939 0.000 0.988 0.012
#> SRR1201861 2 0.0592 0.939 0.000 0.988 0.012
#> SRR1201862 2 0.0592 0.939 0.000 0.988 0.012
#> SRR1201863 2 0.0592 0.939 0.000 0.988 0.012
#> SRR1201859 2 0.0237 0.940 0.000 0.996 0.004
#> SRR1201864 2 0.0592 0.939 0.000 0.988 0.012
#> SRR1201860 2 0.0592 0.939 0.000 0.988 0.012
#> SRR1201873 2 0.0424 0.940 0.000 0.992 0.008
#> SRR1201871 2 0.0237 0.940 0.000 0.996 0.004
#> SRR1201872 2 0.0424 0.940 0.000 0.992 0.008
#> SRR1201980 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201979 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201982 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201981 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201998 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1201996 2 0.0237 0.940 0.000 0.996 0.004
#> SRR1201997 2 0.0237 0.942 0.000 0.996 0.004
#> SRR1202005 2 0.2711 0.926 0.000 0.912 0.088
#> SRR1202006 2 0.2356 0.930 0.000 0.928 0.072
#> SRR1202088 2 0.0237 0.941 0.000 0.996 0.004
#> SRR1202087 2 0.0237 0.941 0.000 0.996 0.004
#> SRR1202093 2 0.0424 0.941 0.000 0.992 0.008
#> SRR1202092 2 0.0592 0.941 0.000 0.988 0.012
#> SRR1202288 2 0.3340 0.914 0.000 0.880 0.120
#> SRR1202289 2 0.3879 0.900 0.000 0.848 0.152
#> SRR1202299 2 0.4002 0.895 0.000 0.840 0.160
#> SRR1202298 2 0.3941 0.898 0.000 0.844 0.156
#> SRR1202303 3 0.4796 0.914 0.220 0.000 0.780
#> SRR1202372 2 0.3879 0.900 0.000 0.848 0.152
#> SRR1202371 2 0.3340 0.914 0.000 0.880 0.120
#> SRR1202563 2 0.5363 0.642 0.000 0.724 0.276
#> SRR1202565 2 0.0592 0.941 0.000 0.988 0.012
#> SRR1202564 2 0.0424 0.941 0.000 0.992 0.008
#> SRR1202649 2 0.4887 0.735 0.000 0.772 0.228
#> SRR1202650 2 0.0747 0.942 0.000 0.984 0.016
#> SRR1202651 2 0.3267 0.916 0.000 0.884 0.116
#> SRR1202843 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202844 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202845 2 0.2878 0.921 0.000 0.904 0.096
#> SRR1202847 2 0.2878 0.921 0.000 0.904 0.096
#> SRR1202846 2 0.2878 0.921 0.000 0.904 0.096
#> SRR1202945 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202949 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202977 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202978 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202979 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202990 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202999 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203005 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203006 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203007 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203009 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203008 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203010 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203011 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203025 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203026 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203027 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203061 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203089 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203125 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203128 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203129 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203130 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203132 2 0.0237 0.940 0.000 0.996 0.004
#> SRR1203131 2 0.0000 0.941 0.000 1.000 0.000
#> SRR1203133 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203138 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203760 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203761 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203770 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203771 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203772 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203773 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203774 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203775 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203800 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203801 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203802 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203803 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203804 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203805 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203806 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203807 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203808 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203811 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203812 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203813 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203814 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203815 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203816 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203817 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203818 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203819 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203822 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203823 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203824 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203825 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203826 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203827 3 0.4887 0.907 0.228 0.000 0.772
#> SRR1203828 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203829 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203830 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203831 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203832 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203833 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203834 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203835 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203836 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203837 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203838 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203839 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203842 3 0.4887 0.907 0.228 0.000 0.772
#> SRR1203843 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203845 2 0.2711 0.927 0.000 0.912 0.088
#> SRR1203844 2 0.2878 0.925 0.000 0.904 0.096
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.4925 0.5248 0 0.572 0.428 0.000
#> SRR1201590 2 0.4972 0.4273 0 0.544 0.456 0.000
#> SRR1201593 2 0.4164 0.6632 0 0.736 0.264 0.000
#> SRR1201592 2 0.4877 0.5083 0 0.592 0.408 0.000
#> SRR1201617 2 0.4304 0.6644 0 0.716 0.284 0.000
#> SRR1201616 2 0.4866 0.5134 0 0.596 0.404 0.000
#> SRR1201619 3 0.0817 0.8709 0 0.024 0.976 0.000
#> SRR1201618 3 0.2011 0.8491 0 0.080 0.920 0.000
#> SRR1201620 2 0.4888 0.5030 0 0.588 0.412 0.000
#> SRR1201621 2 0.4356 0.6595 0 0.708 0.292 0.000
#> SRR1201623 3 0.0336 0.8709 0 0.008 0.992 0.000
#> SRR1201622 3 0.1474 0.8581 0 0.052 0.948 0.000
#> SRR1201624 4 0.0000 0.9684 0 0.000 0.000 1.000
#> SRR1201625 4 0.0000 0.9684 0 0.000 0.000 1.000
#> SRR1201626 4 0.0000 0.9684 0 0.000 0.000 1.000
#> SRR1201627 4 0.0000 0.9684 0 0.000 0.000 1.000
#> SRR1201628 3 0.1474 0.8581 0 0.052 0.948 0.000
#> SRR1201629 3 0.0817 0.8644 0 0.024 0.976 0.000
#> SRR1201630 3 0.3873 0.6319 0 0.228 0.772 0.000
#> SRR1201631 3 0.4585 0.2951 0 0.332 0.668 0.000
#> SRR1201641 3 0.2149 0.8395 0 0.088 0.912 0.000
#> SRR1201640 3 0.1637 0.8592 0 0.060 0.940 0.000
#> SRR1201643 3 0.1867 0.8618 0 0.072 0.928 0.000
#> SRR1201644 3 0.1211 0.8600 0 0.040 0.960 0.000
#> SRR1201661 3 0.4250 0.5472 0 0.276 0.724 0.000
#> SRR1201662 3 0.4585 0.3109 0 0.332 0.668 0.000
#> SRR1201663 3 0.3587 0.7873 0 0.052 0.860 0.088
#> SRR1201664 3 0.3312 0.8067 0 0.052 0.876 0.072
#> SRR1201665 2 0.4925 0.4783 0 0.572 0.428 0.000
#> SRR1201666 2 0.4998 0.4140 0 0.512 0.488 0.000
#> SRR1201667 2 0.4998 0.4140 0 0.512 0.488 0.000
#> SRR1201668 4 0.4756 0.6181 0 0.052 0.176 0.772
#> SRR1201670 3 0.1557 0.8583 0 0.056 0.944 0.000
#> SRR1201669 3 0.1557 0.8583 0 0.056 0.944 0.000
#> SRR1201673 3 0.0921 0.8664 0 0.028 0.972 0.000
#> SRR1201672 3 0.0921 0.8664 0 0.028 0.972 0.000
#> SRR1201671 3 0.2011 0.8491 0 0.080 0.920 0.000
#> SRR1201677 3 0.0921 0.8664 0 0.028 0.972 0.000
#> SRR1201676 3 0.0921 0.8664 0 0.028 0.972 0.000
#> SRR1201675 3 0.0921 0.8664 0 0.028 0.972 0.000
#> SRR1201674 3 0.0921 0.8664 0 0.028 0.972 0.000
#> SRR1201678 3 0.0921 0.8664 0 0.028 0.972 0.000
#> SRR1201682 3 0.2345 0.8045 0 0.100 0.900 0.000
#> SRR1201683 3 0.2345 0.8045 0 0.100 0.900 0.000
#> SRR1201680 3 0.1940 0.8348 0 0.076 0.924 0.000
#> SRR1201681 3 0.2011 0.8306 0 0.080 0.920 0.000
#> SRR1201679 3 0.4967 -0.1964 0 0.452 0.548 0.000
#> SRR1201686 3 0.3521 0.7924 0 0.052 0.864 0.084
#> SRR1201687 3 0.3521 0.7924 0 0.052 0.864 0.084
#> SRR1201688 3 0.3521 0.7924 0 0.052 0.864 0.084
#> SRR1201689 3 0.3521 0.7924 0 0.052 0.864 0.084
#> SRR1201685 4 0.0000 0.9684 0 0.000 0.000 1.000
#> SRR1201692 3 0.1302 0.8573 0 0.044 0.956 0.000
#> SRR1201691 3 0.1302 0.8573 0 0.044 0.956 0.000
#> SRR1201690 3 0.1557 0.8586 0 0.056 0.944 0.000
#> SRR1201696 3 0.1302 0.8573 0 0.044 0.956 0.000
#> SRR1201695 3 0.1302 0.8573 0 0.044 0.956 0.000
#> SRR1201694 3 0.1302 0.8573 0 0.044 0.956 0.000
#> SRR1201693 3 0.1302 0.8573 0 0.044 0.956 0.000
#> SRR1201697 3 0.1302 0.8573 0 0.044 0.956 0.000
#> SRR1201698 3 0.1302 0.8573 0 0.044 0.956 0.000
#> SRR1201700 3 0.1792 0.8551 0 0.068 0.932 0.000
#> SRR1201708 3 0.0336 0.8707 0 0.008 0.992 0.000
#> SRR1201707 3 0.0336 0.8707 0 0.008 0.992 0.000
#> SRR1201706 3 0.0336 0.8707 0 0.008 0.992 0.000
#> SRR1201702 3 0.0336 0.8707 0 0.008 0.992 0.000
#> SRR1201705 3 0.0336 0.8707 0 0.008 0.992 0.000
#> SRR1201701 3 0.0336 0.8707 0 0.008 0.992 0.000
#> SRR1201704 3 0.0336 0.8707 0 0.008 0.992 0.000
#> SRR1201703 3 0.0336 0.8707 0 0.008 0.992 0.000
#> SRR1201716 3 0.0188 0.8704 0 0.004 0.996 0.000
#> SRR1201715 3 0.0188 0.8704 0 0.004 0.996 0.000
#> SRR1201717 3 0.0188 0.8704 0 0.004 0.996 0.000
#> SRR1201712 3 0.0188 0.8704 0 0.004 0.996 0.000
#> SRR1201709 3 0.1474 0.8581 0 0.052 0.948 0.000
#> SRR1201711 3 0.0188 0.8704 0 0.004 0.996 0.000
#> SRR1201714 3 0.0188 0.8704 0 0.004 0.996 0.000
#> SRR1201713 3 0.0188 0.8704 0 0.004 0.996 0.000
#> SRR1201710 3 0.0188 0.8704 0 0.004 0.996 0.000
#> SRR1201719 3 0.3172 0.7594 0 0.160 0.840 0.000
#> SRR1201718 3 0.2081 0.8506 0 0.084 0.916 0.000
#> SRR1201721 3 0.0469 0.8717 0 0.012 0.988 0.000
#> SRR1201720 3 0.1557 0.8586 0 0.056 0.944 0.000
#> SRR1201723 3 0.1661 0.8578 0 0.052 0.944 0.004
#> SRR1201722 3 0.2844 0.8316 0 0.052 0.900 0.048
#> SRR1201725 3 0.2281 0.8364 0 0.096 0.904 0.000
#> SRR1201724 3 0.1792 0.8669 0 0.068 0.932 0.000
#> SRR1201726 3 0.1474 0.8581 0 0.052 0.948 0.000
#> SRR1201727 3 0.0336 0.8709 0 0.008 0.992 0.000
#> SRR1201731 3 0.0707 0.8706 0 0.020 0.980 0.000
#> SRR1201730 3 0.1557 0.8590 0 0.056 0.944 0.000
#> SRR1201734 2 0.4477 0.6406 0 0.688 0.312 0.000
#> SRR1201733 2 0.4925 0.4783 0 0.572 0.428 0.000
#> SRR1201736 3 0.4985 -0.2582 0 0.468 0.532 0.000
#> SRR1201737 3 0.1389 0.8630 0 0.048 0.952 0.000
#> SRR1201739 3 0.4866 -0.1219 0 0.404 0.596 0.000
#> SRR1201738 2 0.4989 0.3923 0 0.528 0.472 0.000
#> SRR1201742 3 0.2589 0.8128 0 0.116 0.884 0.000
#> SRR1201743 3 0.0921 0.8664 0 0.028 0.972 0.000
#> SRR1201745 3 0.5240 0.6080 0 0.072 0.740 0.188
#> SRR1201744 4 0.1209 0.9469 0 0.032 0.004 0.964
#> SRR1201749 3 0.5000 -0.3351 0 0.496 0.504 0.000
#> SRR1201750 3 0.4008 0.5258 0 0.244 0.756 0.000
#> SRR1201752 3 0.0469 0.8711 0 0.012 0.988 0.000
#> SRR1201751 3 0.1637 0.8606 0 0.060 0.940 0.000
#> SRR1201754 2 0.4643 0.6066 0 0.656 0.344 0.000
#> SRR1201753 2 0.4866 0.5127 0 0.596 0.404 0.000
#> SRR1201758 4 0.0000 0.9684 0 0.000 0.000 1.000
#> SRR1201759 4 0.0469 0.9614 0 0.012 0.000 0.988
#> SRR1201760 3 0.1302 0.8648 0 0.044 0.956 0.000
#> SRR1201761 3 0.0707 0.8706 0 0.020 0.980 0.000
#> SRR1201763 4 0.0000 0.9684 0 0.000 0.000 1.000
#> SRR1201762 4 0.0000 0.9684 0 0.000 0.000 1.000
#> SRR1201764 4 0.2450 0.8957 0 0.072 0.016 0.912
#> SRR1201766 3 0.4543 0.4524 0 0.324 0.676 0.000
#> SRR1201768 2 0.4977 0.3018 0 0.540 0.460 0.000
#> SRR1201769 2 0.4977 0.3018 0 0.540 0.460 0.000
#> SRR1201767 2 0.4977 0.3018 0 0.540 0.460 0.000
#> SRR1201770 2 0.4972 0.3104 0 0.544 0.456 0.000
#> SRR1201771 2 0.4972 0.3104 0 0.544 0.456 0.000
#> SRR1201772 2 0.4977 0.3018 0 0.540 0.460 0.000
#> SRR1201773 2 0.4977 0.3018 0 0.540 0.460 0.000
#> SRR1201774 2 0.4977 0.3018 0 0.540 0.460 0.000
#> SRR1201786 2 0.4955 0.3353 0 0.556 0.444 0.000
#> SRR1201784 2 0.4955 0.3353 0 0.556 0.444 0.000
#> SRR1201785 2 0.4955 0.3353 0 0.556 0.444 0.000
#> SRR1201778 3 0.4697 0.2455 0 0.356 0.644 0.000
#> SRR1201779 2 0.4955 0.3353 0 0.556 0.444 0.000
#> SRR1201781 2 0.4955 0.3353 0 0.556 0.444 0.000
#> SRR1201780 2 0.4972 0.3189 0 0.544 0.456 0.000
#> SRR1201783 2 0.4955 0.3353 0 0.556 0.444 0.000
#> SRR1201782 2 0.4955 0.3353 0 0.556 0.444 0.000
#> SRR1201798 2 0.3975 0.6439 0 0.760 0.240 0.000
#> SRR1201797 2 0.3942 0.6437 0 0.764 0.236 0.000
#> SRR1201796 2 0.3907 0.6445 0 0.768 0.232 0.000
#> SRR1201795 2 0.3942 0.6418 0 0.764 0.236 0.000
#> SRR1201799 2 0.3975 0.6439 0 0.760 0.240 0.000
#> SRR1201794 2 0.4008 0.6446 0 0.756 0.244 0.000
#> SRR1201793 2 0.3942 0.6445 0 0.764 0.236 0.000
#> SRR1201792 2 0.3975 0.6451 0 0.760 0.240 0.000
#> SRR1201791 2 0.4898 0.4973 0 0.584 0.416 0.000
#> SRR1201807 2 0.2149 0.5336 0 0.912 0.088 0.000
#> SRR1201808 2 0.2149 0.5336 0 0.912 0.088 0.000
#> SRR1201803 2 0.2149 0.5336 0 0.912 0.088 0.000
#> SRR1201804 2 0.2149 0.5336 0 0.912 0.088 0.000
#> SRR1201805 2 0.2149 0.5336 0 0.912 0.088 0.000
#> SRR1201806 2 0.2149 0.5336 0 0.912 0.088 0.000
#> SRR1201801 2 0.2149 0.5336 0 0.912 0.088 0.000
#> SRR1201802 2 0.2149 0.5336 0 0.912 0.088 0.000
#> SRR1201800 2 0.4605 0.6050 0 0.664 0.336 0.000
#> SRR1201814 2 0.3837 0.6367 0 0.776 0.224 0.000
#> SRR1201816 2 0.3837 0.6367 0 0.776 0.224 0.000
#> SRR1201815 2 0.3837 0.6367 0 0.776 0.224 0.000
#> SRR1201819 2 0.3837 0.6367 0 0.776 0.224 0.000
#> SRR1201820 2 0.3837 0.6367 0 0.776 0.224 0.000
#> SRR1201813 2 0.3486 0.5809 0 0.812 0.188 0.000
#> SRR1201817 2 0.3837 0.6367 0 0.776 0.224 0.000
#> SRR1201818 2 0.3837 0.6367 0 0.776 0.224 0.000
#> SRR1201825 3 0.2773 0.8348 0 0.072 0.900 0.028
#> SRR1201827 3 0.1716 0.8444 0 0.064 0.936 0.000
#> SRR1201828 3 0.1637 0.8472 0 0.060 0.940 0.000
#> SRR1201826 3 0.2408 0.8367 0 0.104 0.896 0.000
#> SRR1201829 3 0.1716 0.8444 0 0.064 0.936 0.000
#> SRR1201830 3 0.1716 0.8444 0 0.064 0.936 0.000
#> SRR1201831 3 0.1637 0.8472 0 0.060 0.940 0.000
#> SRR1201832 3 0.1716 0.8444 0 0.064 0.936 0.000
#> SRR1201833 3 0.1716 0.8444 0 0.064 0.936 0.000
#> SRR1201865 3 0.1118 0.8658 0 0.036 0.964 0.000
#> SRR1201866 3 0.1118 0.8658 0 0.036 0.964 0.000
#> SRR1201867 3 0.1118 0.8658 0 0.036 0.964 0.000
#> SRR1201861 3 0.1118 0.8658 0 0.036 0.964 0.000
#> SRR1201862 3 0.1211 0.8642 0 0.040 0.960 0.000
#> SRR1201863 3 0.1302 0.8655 0 0.044 0.956 0.000
#> SRR1201859 3 0.1557 0.8564 0 0.056 0.944 0.000
#> SRR1201864 3 0.1211 0.8642 0 0.040 0.960 0.000
#> SRR1201860 3 0.1211 0.8670 0 0.040 0.960 0.000
#> SRR1201873 3 0.0336 0.8709 0 0.008 0.992 0.000
#> SRR1201871 3 0.1474 0.8581 0 0.052 0.948 0.000
#> SRR1201872 3 0.0336 0.8709 0 0.008 0.992 0.000
#> SRR1201980 3 0.0592 0.8711 0 0.016 0.984 0.000
#> SRR1201979 3 0.1474 0.8631 0 0.052 0.948 0.000
#> SRR1201982 3 0.0336 0.8710 0 0.008 0.992 0.000
#> SRR1201981 3 0.1792 0.8535 0 0.068 0.932 0.000
#> SRR1201998 3 0.0817 0.8703 0 0.024 0.976 0.000
#> SRR1201996 3 0.1302 0.8699 0 0.044 0.956 0.000
#> SRR1201997 3 0.1211 0.8700 0 0.040 0.960 0.000
#> SRR1202005 3 0.4989 -0.1852 0 0.472 0.528 0.000
#> SRR1202006 2 0.4989 0.3254 0 0.528 0.472 0.000
#> SRR1202088 3 0.1302 0.8671 0 0.044 0.956 0.000
#> SRR1202087 3 0.1940 0.8519 0 0.076 0.924 0.000
#> SRR1202093 3 0.1302 0.8643 0 0.044 0.956 0.000
#> SRR1202092 3 0.2149 0.8436 0 0.088 0.912 0.000
#> SRR1202288 2 0.4925 0.4783 0 0.572 0.428 0.000
#> SRR1202289 2 0.4454 0.6433 0 0.692 0.308 0.000
#> SRR1202299 2 0.2868 0.5877 0 0.864 0.136 0.000
#> SRR1202298 2 0.4406 0.6472 0 0.700 0.300 0.000
#> SRR1202303 4 0.0000 0.9684 0 0.000 0.000 1.000
#> SRR1202372 2 0.4222 0.6644 0 0.728 0.272 0.000
#> SRR1202371 2 0.4907 0.4912 0 0.580 0.420 0.000
#> SRR1202563 2 0.5506 0.3851 0 0.512 0.472 0.016
#> SRR1202565 3 0.1118 0.8652 0 0.036 0.964 0.000
#> SRR1202564 3 0.1211 0.8639 0 0.040 0.960 0.000
#> SRR1202649 2 0.5402 0.3886 0 0.516 0.472 0.012
#> SRR1202650 3 0.2216 0.8509 0 0.092 0.908 0.000
#> SRR1202651 3 0.4977 -0.1061 0 0.460 0.540 0.000
#> SRR1202843 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1202844 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1202845 3 0.4331 0.5038 0 0.288 0.712 0.000
#> SRR1202847 3 0.4817 0.1060 0 0.388 0.612 0.000
#> SRR1202846 3 0.4817 0.1060 0 0.388 0.612 0.000
#> SRR1202945 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1202949 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1202977 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1202978 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1202979 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1202990 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1202999 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203005 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203006 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203007 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203009 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203008 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203010 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203011 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203025 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203026 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203027 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203061 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203089 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203125 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203128 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203129 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203130 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203132 3 0.0336 0.8709 0 0.008 0.992 0.000
#> SRR1203131 3 0.1867 0.8527 0 0.072 0.928 0.000
#> SRR1203133 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203138 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203760 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203761 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203770 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203771 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203772 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203773 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203774 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203775 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203800 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203801 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203802 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203803 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203804 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203805 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203806 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203807 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203808 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203811 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203812 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203813 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203814 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203815 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203816 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203817 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203818 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203819 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203822 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203823 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203824 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203825 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203826 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203827 4 0.0000 0.9684 0 0.000 0.000 1.000
#> SRR1203828 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203829 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203830 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203831 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203832 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203833 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203834 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203835 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203836 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203837 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203838 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203839 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203842 4 0.0000 0.9684 0 0.000 0.000 1.000
#> SRR1203843 1 0.0000 1.0000 1 0.000 0.000 0.000
#> SRR1203845 2 0.4761 0.5643 0 0.628 0.372 0.000
#> SRR1203844 3 0.4866 -0.0204 0 0.404 0.596 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.6092 0.4856 0.000 0.564 0.256 0.000 0.180
#> SRR1201590 5 0.6202 0.2481 0.000 0.356 0.148 0.000 0.496
#> SRR1201593 2 0.5496 0.5647 0.000 0.652 0.152 0.000 0.196
#> SRR1201592 2 0.5858 0.0335 0.000 0.452 0.096 0.000 0.452
#> SRR1201617 2 0.5496 0.5617 0.000 0.652 0.152 0.000 0.196
#> SRR1201616 5 0.5956 0.0549 0.000 0.416 0.108 0.000 0.476
#> SRR1201619 3 0.4588 0.5008 0.000 0.060 0.720 0.000 0.220
#> SRR1201618 5 0.4866 0.4747 0.000 0.036 0.344 0.000 0.620
#> SRR1201620 5 0.5760 0.2151 0.000 0.368 0.096 0.000 0.536
#> SRR1201621 2 0.5526 0.5598 0.000 0.648 0.152 0.000 0.200
#> SRR1201623 3 0.3816 0.4953 0.000 0.000 0.696 0.000 0.304
#> SRR1201622 5 0.4425 0.3054 0.000 0.004 0.452 0.000 0.544
#> SRR1201624 4 0.0000 0.9166 0.000 0.000 0.000 1.000 0.000
#> SRR1201625 4 0.0000 0.9166 0.000 0.000 0.000 1.000 0.000
#> SRR1201626 4 0.0000 0.9166 0.000 0.000 0.000 1.000 0.000
#> SRR1201627 4 0.0000 0.9166 0.000 0.000 0.000 1.000 0.000
#> SRR1201628 3 0.4978 -0.3192 0.000 0.028 0.496 0.000 0.476
#> SRR1201629 3 0.1626 0.6357 0.000 0.016 0.940 0.000 0.044
#> SRR1201630 3 0.6578 -0.0632 0.000 0.248 0.468 0.000 0.284
#> SRR1201631 3 0.4934 0.3229 0.000 0.364 0.600 0.000 0.036
#> SRR1201641 3 0.6024 0.3087 0.000 0.296 0.556 0.000 0.148
#> SRR1201640 3 0.5515 0.3091 0.000 0.112 0.628 0.000 0.260
#> SRR1201643 3 0.4760 -0.0734 0.000 0.020 0.564 0.000 0.416
#> SRR1201644 3 0.3745 0.5635 0.000 0.024 0.780 0.000 0.196
#> SRR1201661 5 0.6620 0.3492 0.000 0.228 0.336 0.000 0.436
#> SRR1201662 2 0.6066 0.2073 0.000 0.456 0.424 0.000 0.120
#> SRR1201663 5 0.5187 0.3992 0.000 0.004 0.336 0.048 0.612
#> SRR1201664 5 0.5128 0.3394 0.000 0.004 0.380 0.036 0.580
#> SRR1201665 5 0.5839 0.3206 0.000 0.324 0.116 0.000 0.560
#> SRR1201666 2 0.6133 0.2343 0.000 0.524 0.148 0.000 0.328
#> SRR1201667 2 0.6133 0.2347 0.000 0.524 0.148 0.000 0.328
#> SRR1201668 5 0.5554 -0.1051 0.000 0.004 0.060 0.408 0.528
#> SRR1201670 5 0.4449 0.4010 0.000 0.004 0.388 0.004 0.604
#> SRR1201669 5 0.4449 0.4010 0.000 0.004 0.388 0.004 0.604
#> SRR1201673 3 0.3536 0.5783 0.000 0.032 0.812 0.000 0.156
#> SRR1201672 3 0.3536 0.5783 0.000 0.032 0.812 0.000 0.156
#> SRR1201671 5 0.4747 0.4802 0.000 0.032 0.332 0.000 0.636
#> SRR1201677 3 0.3536 0.5783 0.000 0.032 0.812 0.000 0.156
#> SRR1201676 3 0.3536 0.5783 0.000 0.032 0.812 0.000 0.156
#> SRR1201675 3 0.3536 0.5783 0.000 0.032 0.812 0.000 0.156
#> SRR1201674 3 0.3536 0.5783 0.000 0.032 0.812 0.000 0.156
#> SRR1201678 3 0.3536 0.5783 0.000 0.032 0.812 0.000 0.156
#> SRR1201682 3 0.6399 0.1537 0.000 0.308 0.496 0.000 0.196
#> SRR1201683 3 0.6411 0.1438 0.000 0.312 0.492 0.000 0.196
#> SRR1201680 3 0.6387 0.1598 0.000 0.304 0.500 0.000 0.196
#> SRR1201681 3 0.6374 0.1633 0.000 0.300 0.504 0.000 0.196
#> SRR1201679 5 0.6339 0.3571 0.000 0.312 0.184 0.000 0.504
#> SRR1201686 5 0.5095 0.3401 0.000 0.004 0.368 0.036 0.592
#> SRR1201687 5 0.5095 0.3401 0.000 0.004 0.368 0.036 0.592
#> SRR1201688 5 0.5095 0.3401 0.000 0.004 0.368 0.036 0.592
#> SRR1201689 5 0.5095 0.3401 0.000 0.004 0.368 0.036 0.592
#> SRR1201685 4 0.2280 0.8681 0.000 0.000 0.000 0.880 0.120
#> SRR1201692 3 0.1216 0.6311 0.000 0.020 0.960 0.000 0.020
#> SRR1201691 3 0.1216 0.6311 0.000 0.020 0.960 0.000 0.020
#> SRR1201690 5 0.5450 0.3745 0.000 0.060 0.444 0.000 0.496
#> SRR1201696 3 0.1216 0.6311 0.000 0.020 0.960 0.000 0.020
#> SRR1201695 3 0.1216 0.6311 0.000 0.020 0.960 0.000 0.020
#> SRR1201694 3 0.1216 0.6311 0.000 0.020 0.960 0.000 0.020
#> SRR1201693 3 0.1216 0.6311 0.000 0.020 0.960 0.000 0.020
#> SRR1201697 3 0.1216 0.6311 0.000 0.020 0.960 0.000 0.020
#> SRR1201698 3 0.1117 0.6316 0.000 0.020 0.964 0.000 0.016
#> SRR1201700 5 0.4768 0.4486 0.000 0.024 0.384 0.000 0.592
#> SRR1201708 3 0.3143 0.6072 0.000 0.000 0.796 0.000 0.204
#> SRR1201707 3 0.3177 0.6062 0.000 0.000 0.792 0.000 0.208
#> SRR1201706 3 0.3143 0.6072 0.000 0.000 0.796 0.000 0.204
#> SRR1201702 3 0.3143 0.6072 0.000 0.000 0.796 0.000 0.204
#> SRR1201705 3 0.3143 0.6072 0.000 0.000 0.796 0.000 0.204
#> SRR1201701 3 0.3242 0.6031 0.000 0.000 0.784 0.000 0.216
#> SRR1201704 3 0.3143 0.6072 0.000 0.000 0.796 0.000 0.204
#> SRR1201703 3 0.3143 0.6072 0.000 0.000 0.796 0.000 0.204
#> SRR1201716 3 0.3336 0.5803 0.000 0.000 0.772 0.000 0.228
#> SRR1201715 3 0.3336 0.5803 0.000 0.000 0.772 0.000 0.228
#> SRR1201717 3 0.3336 0.5803 0.000 0.000 0.772 0.000 0.228
#> SRR1201712 3 0.3336 0.5803 0.000 0.000 0.772 0.000 0.228
#> SRR1201709 5 0.4410 0.3335 0.000 0.004 0.440 0.000 0.556
#> SRR1201711 3 0.3336 0.5803 0.000 0.000 0.772 0.000 0.228
#> SRR1201714 3 0.3336 0.5803 0.000 0.000 0.772 0.000 0.228
#> SRR1201713 3 0.3336 0.5803 0.000 0.000 0.772 0.000 0.228
#> SRR1201710 3 0.3336 0.5803 0.000 0.000 0.772 0.000 0.228
#> SRR1201719 2 0.6372 0.2021 0.000 0.428 0.408 0.000 0.164
#> SRR1201718 3 0.6584 0.0398 0.000 0.272 0.468 0.000 0.260
#> SRR1201721 3 0.3011 0.6038 0.000 0.016 0.844 0.000 0.140
#> SRR1201720 5 0.5048 0.2976 0.000 0.032 0.476 0.000 0.492
#> SRR1201723 5 0.4443 0.2039 0.000 0.004 0.472 0.000 0.524
#> SRR1201722 5 0.4721 0.4026 0.000 0.004 0.348 0.020 0.628
#> SRR1201725 3 0.6339 0.2138 0.000 0.312 0.504 0.000 0.184
#> SRR1201724 3 0.6142 -0.1509 0.000 0.132 0.472 0.000 0.396
#> SRR1201726 5 0.4415 0.3315 0.000 0.004 0.444 0.000 0.552
#> SRR1201727 3 0.3586 0.5354 0.000 0.000 0.736 0.000 0.264
#> SRR1201731 3 0.4058 0.4973 0.000 0.024 0.740 0.000 0.236
#> SRR1201730 3 0.4659 -0.3042 0.000 0.012 0.500 0.000 0.488
#> SRR1201734 2 0.5513 0.5110 0.000 0.632 0.116 0.000 0.252
#> SRR1201733 5 0.5878 0.2973 0.000 0.336 0.116 0.000 0.548
#> SRR1201736 5 0.5577 0.5041 0.000 0.184 0.172 0.000 0.644
#> SRR1201737 3 0.5723 0.0767 0.000 0.088 0.520 0.000 0.392
#> SRR1201739 2 0.6638 0.0761 0.000 0.436 0.236 0.000 0.328
#> SRR1201738 5 0.6068 0.3239 0.000 0.328 0.140 0.000 0.532
#> SRR1201742 5 0.4797 0.4946 0.000 0.044 0.296 0.000 0.660
#> SRR1201743 3 0.4434 0.5217 0.000 0.056 0.736 0.000 0.208
#> SRR1201745 5 0.7595 0.3927 0.000 0.060 0.264 0.236 0.440
#> SRR1201744 4 0.4151 0.5836 0.000 0.004 0.000 0.652 0.344
#> SRR1201749 5 0.6049 0.4317 0.000 0.272 0.164 0.000 0.564
#> SRR1201750 3 0.6088 0.1460 0.000 0.380 0.492 0.000 0.128
#> SRR1201752 3 0.3492 0.5766 0.000 0.016 0.796 0.000 0.188
#> SRR1201751 5 0.4644 0.3464 0.000 0.012 0.460 0.000 0.528
#> SRR1201754 2 0.5792 0.5325 0.000 0.612 0.224 0.000 0.164
#> SRR1201753 2 0.5778 0.0876 0.000 0.464 0.088 0.000 0.448
#> SRR1201758 4 0.0162 0.9152 0.000 0.000 0.000 0.996 0.004
#> SRR1201759 4 0.4213 0.7077 0.000 0.000 0.012 0.680 0.308
#> SRR1201760 3 0.4390 -0.0793 0.000 0.004 0.568 0.000 0.428
#> SRR1201761 3 0.4029 0.3943 0.000 0.004 0.680 0.000 0.316
#> SRR1201763 4 0.0000 0.9166 0.000 0.000 0.000 1.000 0.000
#> SRR1201762 4 0.0000 0.9166 0.000 0.000 0.000 1.000 0.000
#> SRR1201764 4 0.4235 0.5763 0.000 0.008 0.000 0.656 0.336
#> SRR1201766 2 0.6756 -0.1701 0.000 0.388 0.344 0.000 0.268
#> SRR1201768 2 0.3852 0.6066 0.000 0.760 0.220 0.000 0.020
#> SRR1201769 2 0.3663 0.6219 0.000 0.776 0.208 0.000 0.016
#> SRR1201767 2 0.3663 0.6219 0.000 0.776 0.208 0.000 0.016
#> SRR1201770 2 0.3663 0.6219 0.000 0.776 0.208 0.000 0.016
#> SRR1201771 2 0.3663 0.6219 0.000 0.776 0.208 0.000 0.016
#> SRR1201772 2 0.3663 0.6219 0.000 0.776 0.208 0.000 0.016
#> SRR1201773 2 0.3663 0.6219 0.000 0.776 0.208 0.000 0.016
#> SRR1201774 2 0.3663 0.6219 0.000 0.776 0.208 0.000 0.016
#> SRR1201786 2 0.3596 0.6278 0.000 0.784 0.200 0.000 0.016
#> SRR1201784 2 0.3596 0.6278 0.000 0.784 0.200 0.000 0.016
#> SRR1201785 2 0.3596 0.6278 0.000 0.784 0.200 0.000 0.016
#> SRR1201778 5 0.6723 0.3580 0.000 0.324 0.264 0.000 0.412
#> SRR1201779 2 0.3596 0.6278 0.000 0.784 0.200 0.000 0.016
#> SRR1201781 2 0.3596 0.6278 0.000 0.784 0.200 0.000 0.016
#> SRR1201780 2 0.3696 0.6269 0.000 0.772 0.212 0.000 0.016
#> SRR1201783 2 0.3596 0.6278 0.000 0.784 0.200 0.000 0.016
#> SRR1201782 2 0.3596 0.6278 0.000 0.784 0.200 0.000 0.016
#> SRR1201798 2 0.2654 0.6676 0.000 0.884 0.084 0.000 0.032
#> SRR1201797 2 0.2654 0.6676 0.000 0.884 0.084 0.000 0.032
#> SRR1201796 2 0.2654 0.6676 0.000 0.884 0.084 0.000 0.032
#> SRR1201795 2 0.2654 0.6676 0.000 0.884 0.084 0.000 0.032
#> SRR1201799 2 0.2654 0.6676 0.000 0.884 0.084 0.000 0.032
#> SRR1201794 2 0.2712 0.6680 0.000 0.880 0.088 0.000 0.032
#> SRR1201793 2 0.2654 0.6676 0.000 0.884 0.084 0.000 0.032
#> SRR1201792 2 0.2654 0.6676 0.000 0.884 0.084 0.000 0.032
#> SRR1201791 5 0.5933 -0.0447 0.000 0.444 0.104 0.000 0.452
#> SRR1201807 2 0.1216 0.6641 0.000 0.960 0.020 0.000 0.020
#> SRR1201808 2 0.1216 0.6641 0.000 0.960 0.020 0.000 0.020
#> SRR1201803 2 0.1216 0.6641 0.000 0.960 0.020 0.000 0.020
#> SRR1201804 2 0.1216 0.6641 0.000 0.960 0.020 0.000 0.020
#> SRR1201805 2 0.1216 0.6641 0.000 0.960 0.020 0.000 0.020
#> SRR1201806 2 0.1216 0.6641 0.000 0.960 0.020 0.000 0.020
#> SRR1201801 2 0.1216 0.6641 0.000 0.960 0.020 0.000 0.020
#> SRR1201802 2 0.1216 0.6641 0.000 0.960 0.020 0.000 0.020
#> SRR1201800 2 0.5688 0.4124 0.000 0.572 0.100 0.000 0.328
#> SRR1201814 2 0.4982 0.6107 0.000 0.700 0.200 0.000 0.100
#> SRR1201816 2 0.4982 0.6107 0.000 0.700 0.200 0.000 0.100
#> SRR1201815 2 0.4982 0.6107 0.000 0.700 0.200 0.000 0.100
#> SRR1201819 2 0.4982 0.6107 0.000 0.700 0.200 0.000 0.100
#> SRR1201820 2 0.4982 0.6107 0.000 0.700 0.200 0.000 0.100
#> SRR1201813 2 0.4593 0.6524 0.000 0.748 0.128 0.000 0.124
#> SRR1201817 2 0.4982 0.6107 0.000 0.700 0.200 0.000 0.100
#> SRR1201818 2 0.4982 0.6107 0.000 0.700 0.200 0.000 0.100
#> SRR1201825 5 0.5088 0.4829 0.000 0.024 0.340 0.016 0.620
#> SRR1201827 3 0.2189 0.6198 0.000 0.084 0.904 0.000 0.012
#> SRR1201828 3 0.2077 0.6204 0.000 0.084 0.908 0.000 0.008
#> SRR1201826 5 0.5876 0.4051 0.000 0.100 0.412 0.000 0.488
#> SRR1201829 3 0.2189 0.6198 0.000 0.084 0.904 0.000 0.012
#> SRR1201830 3 0.2077 0.6204 0.000 0.084 0.908 0.000 0.008
#> SRR1201831 3 0.2077 0.6204 0.000 0.084 0.908 0.000 0.008
#> SRR1201832 3 0.2077 0.6204 0.000 0.084 0.908 0.000 0.008
#> SRR1201833 3 0.2077 0.6207 0.000 0.084 0.908 0.000 0.008
#> SRR1201865 3 0.1502 0.6155 0.000 0.004 0.940 0.000 0.056
#> SRR1201866 3 0.1502 0.6155 0.000 0.004 0.940 0.000 0.056
#> SRR1201867 3 0.1502 0.6155 0.000 0.004 0.940 0.000 0.056
#> SRR1201861 3 0.1502 0.6155 0.000 0.004 0.940 0.000 0.056
#> SRR1201862 3 0.1502 0.6155 0.000 0.004 0.940 0.000 0.056
#> SRR1201863 3 0.1502 0.6155 0.000 0.004 0.940 0.000 0.056
#> SRR1201859 5 0.4968 0.3504 0.000 0.028 0.456 0.000 0.516
#> SRR1201864 3 0.1502 0.6155 0.000 0.004 0.940 0.000 0.056
#> SRR1201860 3 0.1502 0.6155 0.000 0.004 0.940 0.000 0.056
#> SRR1201873 3 0.4088 0.4226 0.000 0.000 0.632 0.000 0.368
#> SRR1201871 5 0.4443 0.2940 0.000 0.004 0.472 0.000 0.524
#> SRR1201872 3 0.4150 0.3783 0.000 0.000 0.612 0.000 0.388
#> SRR1201980 3 0.3550 0.5225 0.000 0.004 0.760 0.000 0.236
#> SRR1201979 5 0.4555 0.3255 0.000 0.008 0.472 0.000 0.520
#> SRR1201982 3 0.2561 0.6268 0.000 0.020 0.884 0.000 0.096
#> SRR1201981 5 0.5204 0.4397 0.000 0.048 0.392 0.000 0.560
#> SRR1201998 3 0.5697 0.3393 0.000 0.116 0.596 0.000 0.288
#> SRR1201996 3 0.5641 -0.1499 0.000 0.076 0.488 0.000 0.436
#> SRR1201997 3 0.5983 0.3537 0.000 0.168 0.580 0.000 0.252
#> SRR1202005 2 0.5010 0.3641 0.000 0.572 0.392 0.000 0.036
#> SRR1202006 2 0.5010 0.3433 0.000 0.572 0.392 0.000 0.036
#> SRR1202088 3 0.4689 0.0528 0.000 0.016 0.560 0.000 0.424
#> SRR1202087 5 0.4649 0.4285 0.000 0.016 0.404 0.000 0.580
#> SRR1202093 3 0.5551 -0.0396 0.000 0.068 0.488 0.000 0.444
#> SRR1202092 5 0.4902 0.4895 0.000 0.048 0.304 0.000 0.648
#> SRR1202288 5 0.5865 0.3056 0.000 0.332 0.116 0.000 0.552
#> SRR1202289 2 0.5673 0.5005 0.000 0.616 0.132 0.000 0.252
#> SRR1202299 2 0.4634 0.6384 0.000 0.744 0.120 0.000 0.136
#> SRR1202298 2 0.5177 0.5702 0.000 0.676 0.104 0.000 0.220
#> SRR1202303 4 0.0000 0.9166 0.000 0.000 0.000 1.000 0.000
#> SRR1202372 2 0.4723 0.6245 0.000 0.736 0.132 0.000 0.132
#> SRR1202371 5 0.5804 0.2598 0.000 0.352 0.104 0.000 0.544
#> SRR1202563 5 0.6087 0.4051 0.000 0.276 0.148 0.004 0.572
#> SRR1202565 3 0.5263 0.4441 0.000 0.100 0.660 0.000 0.240
#> SRR1202564 3 0.5382 0.4181 0.000 0.104 0.644 0.000 0.252
#> SRR1202649 5 0.6213 0.4176 0.000 0.260 0.136 0.016 0.588
#> SRR1202650 3 0.6190 -0.3437 0.000 0.136 0.444 0.000 0.420
#> SRR1202651 2 0.4632 0.2730 0.000 0.540 0.448 0.000 0.012
#> SRR1202843 1 0.0404 0.9747 0.988 0.000 0.000 0.000 0.012
#> SRR1202844 1 0.0609 0.9740 0.980 0.000 0.000 0.000 0.020
#> SRR1202845 3 0.6593 -0.0424 0.000 0.252 0.464 0.000 0.284
#> SRR1202847 3 0.5188 0.1905 0.000 0.416 0.540 0.000 0.044
#> SRR1202846 3 0.5188 0.1905 0.000 0.416 0.540 0.000 0.044
#> SRR1202945 1 0.0609 0.9748 0.980 0.000 0.000 0.000 0.020
#> SRR1202949 1 0.0703 0.9752 0.976 0.000 0.000 0.000 0.024
#> SRR1202977 1 0.1270 0.9672 0.948 0.000 0.000 0.000 0.052
#> SRR1202978 1 0.1341 0.9658 0.944 0.000 0.000 0.000 0.056
#> SRR1202979 1 0.1043 0.9708 0.960 0.000 0.000 0.000 0.040
#> SRR1202990 1 0.1121 0.9694 0.956 0.000 0.000 0.000 0.044
#> SRR1202999 1 0.0609 0.9716 0.980 0.000 0.000 0.000 0.020
#> SRR1203005 1 0.0609 0.9716 0.980 0.000 0.000 0.000 0.020
#> SRR1203006 1 0.0609 0.9716 0.980 0.000 0.000 0.000 0.020
#> SRR1203007 1 0.0510 0.9729 0.984 0.000 0.000 0.000 0.016
#> SRR1203009 1 0.0880 0.9744 0.968 0.000 0.000 0.000 0.032
#> SRR1203008 1 0.0880 0.9744 0.968 0.000 0.000 0.000 0.032
#> SRR1203010 1 0.0510 0.9728 0.984 0.000 0.000 0.000 0.016
#> SRR1203011 1 0.0510 0.9729 0.984 0.000 0.000 0.000 0.016
#> SRR1203025 1 0.0609 0.9716 0.980 0.000 0.000 0.000 0.020
#> SRR1203026 1 0.0609 0.9716 0.980 0.000 0.000 0.000 0.020
#> SRR1203027 1 0.0290 0.9743 0.992 0.000 0.000 0.000 0.008
#> SRR1203061 1 0.1341 0.9658 0.944 0.000 0.000 0.000 0.056
#> SRR1203089 1 0.1341 0.9658 0.944 0.000 0.000 0.000 0.056
#> SRR1203125 1 0.1270 0.9672 0.948 0.000 0.000 0.000 0.052
#> SRR1203128 1 0.0609 0.9716 0.980 0.000 0.000 0.000 0.020
#> SRR1203129 1 0.0609 0.9716 0.980 0.000 0.000 0.000 0.020
#> SRR1203130 1 0.0609 0.9748 0.980 0.000 0.000 0.000 0.020
#> SRR1203132 3 0.3359 0.5755 0.000 0.020 0.816 0.000 0.164
#> SRR1203131 5 0.5221 0.4390 0.000 0.048 0.400 0.000 0.552
#> SRR1203133 1 0.0609 0.9716 0.980 0.000 0.000 0.000 0.020
#> SRR1203138 1 0.0609 0.9716 0.980 0.000 0.000 0.000 0.020
#> SRR1203760 1 0.1270 0.9673 0.948 0.000 0.000 0.000 0.052
#> SRR1203761 1 0.1341 0.9658 0.944 0.000 0.000 0.000 0.056
#> SRR1203770 1 0.0794 0.9728 0.972 0.000 0.000 0.000 0.028
#> SRR1203771 1 0.0703 0.9727 0.976 0.000 0.000 0.000 0.024
#> SRR1203772 1 0.0794 0.9734 0.972 0.000 0.000 0.000 0.028
#> SRR1203773 1 0.1341 0.9658 0.944 0.000 0.000 0.000 0.056
#> SRR1203774 1 0.1341 0.9658 0.944 0.000 0.000 0.000 0.056
#> SRR1203775 1 0.1341 0.9658 0.944 0.000 0.000 0.000 0.056
#> SRR1203800 1 0.1341 0.9658 0.944 0.000 0.000 0.000 0.056
#> SRR1203801 1 0.1270 0.9673 0.948 0.000 0.000 0.000 0.052
#> SRR1203802 1 0.0290 0.9745 0.992 0.000 0.000 0.000 0.008
#> SRR1203803 1 0.0510 0.9744 0.984 0.000 0.000 0.000 0.016
#> SRR1203804 1 0.1270 0.9672 0.948 0.000 0.000 0.000 0.052
#> SRR1203805 1 0.1121 0.9694 0.956 0.000 0.000 0.000 0.044
#> SRR1203806 1 0.1341 0.9658 0.944 0.000 0.000 0.000 0.056
#> SRR1203807 1 0.1341 0.9658 0.944 0.000 0.000 0.000 0.056
#> SRR1203808 1 0.1341 0.9658 0.944 0.000 0.000 0.000 0.056
#> SRR1203811 1 0.1341 0.9658 0.944 0.000 0.000 0.000 0.056
#> SRR1203812 1 0.0963 0.9712 0.964 0.000 0.000 0.000 0.036
#> SRR1203813 1 0.0609 0.9716 0.980 0.000 0.000 0.000 0.020
#> SRR1203814 1 0.0290 0.9745 0.992 0.000 0.000 0.000 0.008
#> SRR1203815 1 0.0963 0.9714 0.964 0.000 0.000 0.000 0.036
#> SRR1203816 1 0.0290 0.9748 0.992 0.000 0.000 0.000 0.008
#> SRR1203817 1 0.0290 0.9743 0.992 0.000 0.000 0.000 0.008
#> SRR1203818 1 0.0703 0.9727 0.976 0.000 0.000 0.000 0.024
#> SRR1203819 1 0.0609 0.9716 0.980 0.000 0.000 0.000 0.020
#> SRR1203822 1 0.0609 0.9716 0.980 0.000 0.000 0.000 0.020
#> SRR1203823 1 0.0510 0.9729 0.984 0.000 0.000 0.000 0.016
#> SRR1203824 1 0.0404 0.9744 0.988 0.000 0.000 0.000 0.012
#> SRR1203825 1 0.0609 0.9716 0.980 0.000 0.000 0.000 0.020
#> SRR1203826 1 0.0963 0.9743 0.964 0.000 0.000 0.000 0.036
#> SRR1203827 4 0.0000 0.9166 0.000 0.000 0.000 1.000 0.000
#> SRR1203828 1 0.0609 0.9716 0.980 0.000 0.000 0.000 0.020
#> SRR1203829 1 0.0609 0.9716 0.980 0.000 0.000 0.000 0.020
#> SRR1203830 1 0.0609 0.9716 0.980 0.000 0.000 0.000 0.020
#> SRR1203831 1 0.0963 0.9712 0.964 0.000 0.000 0.000 0.036
#> SRR1203832 1 0.1121 0.9694 0.956 0.000 0.000 0.000 0.044
#> SRR1203833 1 0.1341 0.9658 0.944 0.000 0.000 0.000 0.056
#> SRR1203834 1 0.1043 0.9703 0.960 0.000 0.000 0.000 0.040
#> SRR1203835 1 0.0510 0.9729 0.984 0.000 0.000 0.000 0.016
#> SRR1203836 1 0.1341 0.9658 0.944 0.000 0.000 0.000 0.056
#> SRR1203837 1 0.0404 0.9737 0.988 0.000 0.000 0.000 0.012
#> SRR1203838 1 0.1197 0.9684 0.952 0.000 0.000 0.000 0.048
#> SRR1203839 1 0.0162 0.9745 0.996 0.000 0.000 0.000 0.004
#> SRR1203842 4 0.0000 0.9166 0.000 0.000 0.000 1.000 0.000
#> SRR1203843 1 0.1341 0.9658 0.944 0.000 0.000 0.000 0.056
#> SRR1203845 2 0.5806 0.5466 0.000 0.600 0.256 0.000 0.144
#> SRR1203844 5 0.6645 0.2931 0.000 0.316 0.244 0.000 0.440
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 2 0.4147 0.69603 0.000 0.736 0.064 0.000 0.004 0.196
#> SRR1201590 6 0.5343 0.32525 0.000 0.344 0.060 0.000 0.028 0.568
#> SRR1201593 2 0.3683 0.69903 0.000 0.768 0.048 0.000 0.000 0.184
#> SRR1201592 6 0.5087 0.11808 0.000 0.420 0.040 0.000 0.020 0.520
#> SRR1201617 2 0.4011 0.67863 0.000 0.732 0.056 0.000 0.000 0.212
#> SRR1201616 6 0.4984 0.19840 0.000 0.392 0.036 0.000 0.020 0.552
#> SRR1201619 3 0.6678 0.26299 0.000 0.172 0.520 0.000 0.096 0.212
#> SRR1201618 6 0.6131 0.32269 0.000 0.028 0.192 0.000 0.248 0.532
#> SRR1201620 6 0.4913 0.38235 0.000 0.316 0.036 0.000 0.028 0.620
#> SRR1201621 2 0.3807 0.69598 0.000 0.756 0.052 0.000 0.000 0.192
#> SRR1201623 5 0.5609 0.42650 0.000 0.000 0.220 0.000 0.544 0.236
#> SRR1201622 5 0.5954 0.28102 0.000 0.004 0.204 0.000 0.468 0.324
#> SRR1201624 4 0.0000 0.87726 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201625 4 0.0363 0.87693 0.000 0.000 0.000 0.988 0.012 0.000
#> SRR1201626 4 0.0000 0.87726 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201627 4 0.0363 0.87693 0.000 0.000 0.000 0.988 0.012 0.000
#> SRR1201628 6 0.6490 -0.01970 0.000 0.020 0.264 0.000 0.328 0.388
#> SRR1201629 3 0.2605 0.66624 0.000 0.020 0.876 0.000 0.092 0.012
#> SRR1201630 2 0.7312 -0.09028 0.000 0.416 0.216 0.000 0.144 0.224
#> SRR1201631 2 0.5986 0.45916 0.000 0.612 0.192 0.000 0.096 0.100
#> SRR1201641 2 0.7421 -0.15903 0.000 0.384 0.224 0.000 0.244 0.148
#> SRR1201640 3 0.7573 -0.21536 0.000 0.304 0.316 0.000 0.184 0.196
#> SRR1201643 6 0.6588 -0.10708 0.000 0.024 0.340 0.000 0.280 0.356
#> SRR1201644 3 0.6063 0.09755 0.000 0.032 0.552 0.000 0.240 0.176
#> SRR1201661 6 0.7173 0.41516 0.000 0.276 0.204 0.000 0.108 0.412
#> SRR1201662 2 0.5191 0.65154 0.000 0.660 0.164 0.000 0.016 0.160
#> SRR1201663 5 0.5978 0.28754 0.000 0.004 0.096 0.040 0.544 0.316
#> SRR1201664 5 0.5647 0.31615 0.000 0.004 0.108 0.016 0.568 0.304
#> SRR1201665 6 0.5389 0.49984 0.000 0.232 0.052 0.000 0.072 0.644
#> SRR1201666 2 0.5570 0.34413 0.000 0.528 0.068 0.000 0.032 0.372
#> SRR1201667 2 0.5682 0.33323 0.000 0.524 0.068 0.000 0.040 0.368
#> SRR1201668 5 0.6593 0.09301 0.000 0.004 0.016 0.316 0.364 0.300
#> SRR1201670 5 0.5523 0.28980 0.000 0.004 0.140 0.000 0.548 0.308
#> SRR1201669 5 0.5523 0.28980 0.000 0.004 0.140 0.000 0.548 0.308
#> SRR1201673 3 0.2908 0.69710 0.000 0.000 0.848 0.000 0.048 0.104
#> SRR1201672 3 0.2908 0.69710 0.000 0.000 0.848 0.000 0.048 0.104
#> SRR1201671 6 0.6185 0.27755 0.000 0.024 0.192 0.000 0.280 0.504
#> SRR1201677 3 0.2908 0.69710 0.000 0.000 0.848 0.000 0.048 0.104
#> SRR1201676 3 0.2908 0.69710 0.000 0.000 0.848 0.000 0.048 0.104
#> SRR1201675 3 0.2908 0.69710 0.000 0.000 0.848 0.000 0.048 0.104
#> SRR1201674 3 0.2908 0.69710 0.000 0.000 0.848 0.000 0.048 0.104
#> SRR1201678 3 0.2908 0.69710 0.000 0.000 0.848 0.000 0.048 0.104
#> SRR1201682 2 0.6974 0.28109 0.000 0.428 0.232 0.000 0.076 0.264
#> SRR1201683 2 0.6977 0.27775 0.000 0.428 0.236 0.000 0.076 0.260
#> SRR1201680 2 0.7011 0.24331 0.000 0.416 0.240 0.000 0.076 0.268
#> SRR1201681 2 0.7000 0.25934 0.000 0.420 0.240 0.000 0.076 0.264
#> SRR1201679 6 0.5860 0.47066 0.000 0.268 0.104 0.000 0.048 0.580
#> SRR1201686 5 0.5439 0.35810 0.000 0.004 0.092 0.020 0.612 0.272
#> SRR1201687 5 0.5439 0.35810 0.000 0.004 0.092 0.020 0.612 0.272
#> SRR1201688 5 0.5439 0.35810 0.000 0.004 0.092 0.020 0.612 0.272
#> SRR1201689 5 0.5439 0.35810 0.000 0.004 0.092 0.020 0.612 0.272
#> SRR1201685 4 0.3370 0.77879 0.000 0.000 0.000 0.812 0.124 0.064
#> SRR1201692 3 0.0603 0.72713 0.000 0.016 0.980 0.000 0.000 0.004
#> SRR1201691 3 0.0603 0.72713 0.000 0.016 0.980 0.000 0.000 0.004
#> SRR1201690 6 0.6840 0.21665 0.000 0.060 0.224 0.000 0.288 0.428
#> SRR1201696 3 0.0603 0.72713 0.000 0.016 0.980 0.000 0.000 0.004
#> SRR1201695 3 0.0603 0.72713 0.000 0.016 0.980 0.000 0.000 0.004
#> SRR1201694 3 0.0603 0.72713 0.000 0.016 0.980 0.000 0.000 0.004
#> SRR1201693 3 0.0603 0.72713 0.000 0.016 0.980 0.000 0.000 0.004
#> SRR1201697 3 0.0603 0.72713 0.000 0.016 0.980 0.000 0.000 0.004
#> SRR1201698 3 0.0862 0.72733 0.000 0.016 0.972 0.000 0.004 0.008
#> SRR1201700 6 0.6193 0.06696 0.000 0.016 0.184 0.000 0.380 0.420
#> SRR1201708 5 0.4230 0.41980 0.000 0.000 0.364 0.000 0.612 0.024
#> SRR1201707 5 0.4230 0.41980 0.000 0.000 0.364 0.000 0.612 0.024
#> SRR1201706 5 0.4230 0.41980 0.000 0.000 0.364 0.000 0.612 0.024
#> SRR1201702 5 0.4230 0.41980 0.000 0.000 0.364 0.000 0.612 0.024
#> SRR1201705 5 0.4289 0.41795 0.000 0.000 0.360 0.000 0.612 0.028
#> SRR1201701 5 0.4332 0.42806 0.000 0.000 0.352 0.000 0.616 0.032
#> SRR1201704 5 0.4289 0.41795 0.000 0.000 0.360 0.000 0.612 0.028
#> SRR1201703 5 0.4289 0.41795 0.000 0.000 0.360 0.000 0.612 0.028
#> SRR1201716 5 0.3515 0.44296 0.000 0.000 0.324 0.000 0.676 0.000
#> SRR1201715 5 0.3515 0.44296 0.000 0.000 0.324 0.000 0.676 0.000
#> SRR1201717 5 0.3515 0.44296 0.000 0.000 0.324 0.000 0.676 0.000
#> SRR1201712 5 0.3515 0.44296 0.000 0.000 0.324 0.000 0.676 0.000
#> SRR1201709 5 0.5856 0.29315 0.000 0.004 0.188 0.000 0.492 0.316
#> SRR1201711 5 0.3515 0.44296 0.000 0.000 0.324 0.000 0.676 0.000
#> SRR1201714 5 0.3515 0.44296 0.000 0.000 0.324 0.000 0.676 0.000
#> SRR1201713 5 0.3515 0.44296 0.000 0.000 0.324 0.000 0.676 0.000
#> SRR1201710 5 0.3515 0.44296 0.000 0.000 0.324 0.000 0.676 0.000
#> SRR1201719 2 0.6050 0.48435 0.000 0.556 0.132 0.000 0.044 0.268
#> SRR1201718 2 0.6982 0.19046 0.000 0.420 0.204 0.000 0.080 0.296
#> SRR1201721 3 0.6429 -0.40275 0.000 0.024 0.436 0.000 0.312 0.228
#> SRR1201720 5 0.6593 0.02703 0.000 0.028 0.248 0.000 0.372 0.352
#> SRR1201723 5 0.5731 0.29428 0.000 0.004 0.132 0.008 0.536 0.320
#> SRR1201722 5 0.5786 0.29473 0.000 0.004 0.104 0.024 0.556 0.312
#> SRR1201725 2 0.7132 0.20063 0.000 0.448 0.160 0.000 0.144 0.248
#> SRR1201724 6 0.7529 0.32360 0.000 0.216 0.272 0.000 0.164 0.348
#> SRR1201726 5 0.5898 0.28802 0.000 0.004 0.196 0.000 0.484 0.316
#> SRR1201727 5 0.5888 0.39168 0.000 0.000 0.256 0.000 0.476 0.268
#> SRR1201731 5 0.6581 0.18421 0.000 0.024 0.336 0.000 0.364 0.276
#> SRR1201730 6 0.6592 -0.08919 0.000 0.024 0.284 0.000 0.336 0.356
#> SRR1201734 2 0.3885 0.67614 0.000 0.736 0.044 0.000 0.000 0.220
#> SRR1201733 6 0.4995 0.48715 0.000 0.252 0.052 0.000 0.036 0.660
#> SRR1201736 6 0.5786 0.45828 0.000 0.108 0.100 0.000 0.148 0.644
#> SRR1201737 6 0.6963 0.25255 0.000 0.076 0.232 0.000 0.260 0.432
#> SRR1201739 2 0.5722 0.35279 0.000 0.528 0.068 0.000 0.044 0.360
#> SRR1201738 6 0.5419 0.50736 0.000 0.244 0.084 0.000 0.040 0.632
#> SRR1201742 6 0.5713 0.37811 0.000 0.024 0.176 0.000 0.200 0.600
#> SRR1201743 3 0.5561 0.24112 0.000 0.012 0.584 0.000 0.144 0.260
#> SRR1201745 6 0.7434 0.28592 0.000 0.100 0.072 0.204 0.112 0.512
#> SRR1201744 4 0.4389 0.36263 0.000 0.000 0.000 0.528 0.024 0.448
#> SRR1201749 6 0.6138 0.49488 0.000 0.180 0.100 0.000 0.120 0.600
#> SRR1201750 2 0.6004 0.41762 0.000 0.576 0.260 0.000 0.096 0.068
#> SRR1201752 3 0.5512 0.34243 0.000 0.020 0.620 0.000 0.208 0.152
#> SRR1201751 6 0.6470 0.12131 0.000 0.024 0.236 0.000 0.320 0.420
#> SRR1201754 2 0.3683 0.69964 0.000 0.764 0.044 0.000 0.000 0.192
#> SRR1201753 6 0.5028 0.04275 0.000 0.436 0.040 0.000 0.016 0.508
#> SRR1201758 4 0.0146 0.87679 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1201759 4 0.5524 0.36881 0.000 0.000 0.004 0.504 0.372 0.120
#> SRR1201760 5 0.6526 0.26857 0.000 0.020 0.340 0.000 0.360 0.280
#> SRR1201761 5 0.6107 0.30718 0.000 0.008 0.232 0.000 0.464 0.296
#> SRR1201763 4 0.0363 0.87693 0.000 0.000 0.000 0.988 0.012 0.000
#> SRR1201762 4 0.0000 0.87726 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201764 4 0.4720 0.39337 0.000 0.000 0.000 0.560 0.052 0.388
#> SRR1201766 2 0.6076 0.42529 0.000 0.608 0.144 0.000 0.088 0.160
#> SRR1201768 2 0.2697 0.71392 0.000 0.876 0.068 0.000 0.008 0.048
#> SRR1201769 2 0.2639 0.71544 0.000 0.880 0.064 0.000 0.008 0.048
#> SRR1201767 2 0.2697 0.71392 0.000 0.876 0.068 0.000 0.008 0.048
#> SRR1201770 2 0.2639 0.71544 0.000 0.880 0.064 0.000 0.008 0.048
#> SRR1201771 2 0.2639 0.71544 0.000 0.880 0.064 0.000 0.008 0.048
#> SRR1201772 2 0.2639 0.71544 0.000 0.880 0.064 0.000 0.008 0.048
#> SRR1201773 2 0.2639 0.71544 0.000 0.880 0.064 0.000 0.008 0.048
#> SRR1201774 2 0.2697 0.71392 0.000 0.876 0.068 0.000 0.008 0.048
#> SRR1201786 2 0.2579 0.71689 0.000 0.884 0.060 0.000 0.008 0.048
#> SRR1201784 2 0.2579 0.71689 0.000 0.884 0.060 0.000 0.008 0.048
#> SRR1201785 2 0.2579 0.71689 0.000 0.884 0.060 0.000 0.008 0.048
#> SRR1201778 6 0.6531 0.32093 0.000 0.360 0.084 0.000 0.104 0.452
#> SRR1201779 2 0.2579 0.71689 0.000 0.884 0.060 0.000 0.008 0.048
#> SRR1201781 2 0.2579 0.71689 0.000 0.884 0.060 0.000 0.008 0.048
#> SRR1201780 2 0.2579 0.71689 0.000 0.884 0.060 0.000 0.008 0.048
#> SRR1201783 2 0.2579 0.71689 0.000 0.884 0.060 0.000 0.008 0.048
#> SRR1201782 2 0.2579 0.71689 0.000 0.884 0.060 0.000 0.008 0.048
#> SRR1201798 2 0.2737 0.73473 0.000 0.868 0.044 0.000 0.004 0.084
#> SRR1201797 2 0.2737 0.73473 0.000 0.868 0.044 0.000 0.004 0.084
#> SRR1201796 2 0.2737 0.73473 0.000 0.868 0.044 0.000 0.004 0.084
#> SRR1201795 2 0.2670 0.73507 0.000 0.872 0.040 0.000 0.004 0.084
#> SRR1201799 2 0.2670 0.73507 0.000 0.872 0.040 0.000 0.004 0.084
#> SRR1201794 2 0.2737 0.73473 0.000 0.868 0.044 0.000 0.004 0.084
#> SRR1201793 2 0.2737 0.73473 0.000 0.868 0.044 0.000 0.004 0.084
#> SRR1201792 2 0.2737 0.73473 0.000 0.868 0.044 0.000 0.004 0.084
#> SRR1201791 6 0.5088 0.13340 0.000 0.412 0.036 0.000 0.024 0.528
#> SRR1201807 2 0.2213 0.73810 0.000 0.888 0.008 0.000 0.004 0.100
#> SRR1201808 2 0.2213 0.73810 0.000 0.888 0.008 0.000 0.004 0.100
#> SRR1201803 2 0.2261 0.73784 0.000 0.884 0.008 0.000 0.004 0.104
#> SRR1201804 2 0.2213 0.73810 0.000 0.888 0.008 0.000 0.004 0.100
#> SRR1201805 2 0.2213 0.73810 0.000 0.888 0.008 0.000 0.004 0.100
#> SRR1201806 2 0.2213 0.73810 0.000 0.888 0.008 0.000 0.004 0.100
#> SRR1201801 2 0.2213 0.73810 0.000 0.888 0.008 0.000 0.004 0.100
#> SRR1201802 2 0.2213 0.73810 0.000 0.888 0.008 0.000 0.004 0.100
#> SRR1201800 2 0.4009 0.61346 0.000 0.684 0.028 0.000 0.000 0.288
#> SRR1201814 2 0.2450 0.73061 0.000 0.868 0.016 0.000 0.000 0.116
#> SRR1201816 2 0.2450 0.73061 0.000 0.868 0.016 0.000 0.000 0.116
#> SRR1201815 2 0.2450 0.73061 0.000 0.868 0.016 0.000 0.000 0.116
#> SRR1201819 2 0.2450 0.73061 0.000 0.868 0.016 0.000 0.000 0.116
#> SRR1201820 2 0.2450 0.73061 0.000 0.868 0.016 0.000 0.000 0.116
#> SRR1201813 2 0.2641 0.74535 0.000 0.876 0.048 0.000 0.004 0.072
#> SRR1201817 2 0.2450 0.73061 0.000 0.868 0.016 0.000 0.000 0.116
#> SRR1201818 2 0.2450 0.73061 0.000 0.868 0.016 0.000 0.000 0.116
#> SRR1201825 5 0.5760 0.00252 0.000 0.004 0.148 0.000 0.436 0.412
#> SRR1201827 3 0.3172 0.68980 0.000 0.100 0.844 0.000 0.016 0.040
#> SRR1201828 3 0.3172 0.68980 0.000 0.100 0.844 0.000 0.016 0.040
#> SRR1201826 6 0.6904 0.34554 0.000 0.100 0.196 0.000 0.224 0.480
#> SRR1201829 3 0.3219 0.68588 0.000 0.104 0.840 0.000 0.016 0.040
#> SRR1201830 3 0.3172 0.68980 0.000 0.100 0.844 0.000 0.016 0.040
#> SRR1201831 3 0.3172 0.68980 0.000 0.100 0.844 0.000 0.016 0.040
#> SRR1201832 3 0.3172 0.68980 0.000 0.100 0.844 0.000 0.016 0.040
#> SRR1201833 3 0.3332 0.68020 0.000 0.108 0.832 0.000 0.016 0.044
#> SRR1201865 3 0.1204 0.69160 0.000 0.000 0.944 0.000 0.056 0.000
#> SRR1201866 3 0.1204 0.69160 0.000 0.000 0.944 0.000 0.056 0.000
#> SRR1201867 3 0.1204 0.69160 0.000 0.000 0.944 0.000 0.056 0.000
#> SRR1201861 3 0.1349 0.69359 0.000 0.004 0.940 0.000 0.056 0.000
#> SRR1201862 3 0.1204 0.69160 0.000 0.000 0.944 0.000 0.056 0.000
#> SRR1201863 3 0.1204 0.69160 0.000 0.000 0.944 0.000 0.056 0.000
#> SRR1201859 6 0.6343 -0.03698 0.000 0.016 0.232 0.000 0.336 0.416
#> SRR1201864 3 0.1204 0.69160 0.000 0.000 0.944 0.000 0.056 0.000
#> SRR1201860 3 0.1204 0.69160 0.000 0.000 0.944 0.000 0.056 0.000
#> SRR1201873 5 0.4037 0.51376 0.000 0.000 0.200 0.000 0.736 0.064
#> SRR1201871 5 0.6061 0.24388 0.000 0.004 0.228 0.000 0.440 0.328
#> SRR1201872 5 0.4008 0.51375 0.000 0.000 0.196 0.000 0.740 0.064
#> SRR1201980 3 0.6480 -0.35500 0.000 0.020 0.400 0.000 0.312 0.268
#> SRR1201979 6 0.6621 0.05669 0.000 0.028 0.276 0.000 0.312 0.384
#> SRR1201982 3 0.3776 0.63674 0.000 0.028 0.808 0.000 0.104 0.060
#> SRR1201981 6 0.6735 0.19982 0.000 0.048 0.224 0.000 0.304 0.424
#> SRR1201998 5 0.7345 0.03280 0.000 0.116 0.244 0.000 0.368 0.272
#> SRR1201996 6 0.7304 0.19284 0.000 0.112 0.228 0.000 0.288 0.372
#> SRR1201997 5 0.7647 -0.14664 0.000 0.268 0.228 0.000 0.312 0.192
#> SRR1202005 2 0.4488 0.64881 0.000 0.736 0.168 0.000 0.024 0.072
#> SRR1202006 2 0.4709 0.67531 0.000 0.704 0.140 0.000 0.008 0.148
#> SRR1202088 6 0.6253 0.00731 0.000 0.012 0.224 0.000 0.348 0.416
#> SRR1202087 6 0.5932 0.11159 0.000 0.004 0.196 0.000 0.332 0.468
#> SRR1202093 6 0.6410 0.21831 0.000 0.028 0.232 0.000 0.272 0.468
#> SRR1202092 6 0.5788 0.36132 0.000 0.024 0.180 0.000 0.208 0.588
#> SRR1202288 6 0.5001 0.48520 0.000 0.252 0.048 0.000 0.040 0.660
#> SRR1202289 2 0.4332 0.69422 0.000 0.752 0.048 0.000 0.036 0.164
#> SRR1202299 2 0.2907 0.73008 0.000 0.828 0.020 0.000 0.000 0.152
#> SRR1202298 2 0.3596 0.71306 0.000 0.784 0.040 0.000 0.004 0.172
#> SRR1202303 4 0.0363 0.87693 0.000 0.000 0.000 0.988 0.012 0.000
#> SRR1202372 2 0.2999 0.73000 0.000 0.840 0.048 0.000 0.000 0.112
#> SRR1202371 6 0.4833 0.46088 0.000 0.268 0.040 0.000 0.032 0.660
#> SRR1202563 6 0.5498 0.49774 0.000 0.180 0.080 0.004 0.068 0.668
#> SRR1202565 3 0.7545 -0.09953 0.000 0.248 0.344 0.000 0.160 0.248
#> SRR1202564 3 0.7569 -0.13566 0.000 0.264 0.328 0.000 0.160 0.248
#> SRR1202649 6 0.6160 0.48903 0.000 0.168 0.084 0.008 0.124 0.616
#> SRR1202650 6 0.7331 0.36581 0.000 0.180 0.192 0.000 0.204 0.424
#> SRR1202651 2 0.4335 0.68456 0.000 0.760 0.140 0.000 0.032 0.068
#> SRR1202843 1 0.1644 0.87464 0.932 0.000 0.000 0.000 0.028 0.040
#> SRR1202844 1 0.1549 0.87718 0.936 0.000 0.000 0.000 0.020 0.044
#> SRR1202845 2 0.7010 0.09100 0.000 0.468 0.208 0.000 0.112 0.212
#> SRR1202847 2 0.5649 0.48512 0.000 0.632 0.200 0.000 0.048 0.120
#> SRR1202846 2 0.5649 0.48512 0.000 0.632 0.200 0.000 0.048 0.120
#> SRR1202945 1 0.0891 0.87783 0.968 0.000 0.000 0.000 0.008 0.024
#> SRR1202949 1 0.2122 0.87866 0.900 0.000 0.000 0.000 0.024 0.076
#> SRR1202977 1 0.3578 0.85283 0.784 0.000 0.000 0.000 0.052 0.164
#> SRR1202978 1 0.3744 0.84172 0.764 0.000 0.000 0.000 0.052 0.184
#> SRR1202979 1 0.3315 0.85872 0.804 0.000 0.000 0.000 0.040 0.156
#> SRR1202990 1 0.3578 0.85283 0.784 0.000 0.000 0.000 0.052 0.164
#> SRR1202999 1 0.2164 0.85498 0.900 0.000 0.000 0.000 0.032 0.068
#> SRR1203005 1 0.2106 0.85643 0.904 0.000 0.000 0.000 0.032 0.064
#> SRR1203006 1 0.1984 0.86189 0.912 0.000 0.000 0.000 0.032 0.056
#> SRR1203007 1 0.1921 0.86447 0.916 0.000 0.000 0.000 0.032 0.052
#> SRR1203009 1 0.2629 0.86544 0.868 0.000 0.000 0.000 0.040 0.092
#> SRR1203008 1 0.2629 0.86544 0.868 0.000 0.000 0.000 0.040 0.092
#> SRR1203010 1 0.2164 0.85498 0.900 0.000 0.000 0.000 0.032 0.068
#> SRR1203011 1 0.1408 0.87275 0.944 0.000 0.000 0.000 0.020 0.036
#> SRR1203025 1 0.1845 0.86650 0.920 0.000 0.000 0.000 0.028 0.052
#> SRR1203026 1 0.2164 0.85498 0.900 0.000 0.000 0.000 0.032 0.068
#> SRR1203027 1 0.1333 0.87743 0.944 0.000 0.000 0.000 0.008 0.048
#> SRR1203061 1 0.3712 0.84183 0.768 0.000 0.000 0.000 0.052 0.180
#> SRR1203089 1 0.3679 0.84357 0.772 0.000 0.000 0.000 0.052 0.176
#> SRR1203125 1 0.3612 0.84848 0.780 0.000 0.000 0.000 0.052 0.168
#> SRR1203128 1 0.2106 0.85754 0.904 0.000 0.000 0.000 0.032 0.064
#> SRR1203129 1 0.1700 0.86536 0.928 0.000 0.000 0.000 0.024 0.048
#> SRR1203130 1 0.1765 0.87460 0.924 0.000 0.000 0.000 0.024 0.052
#> SRR1203132 3 0.4792 0.48881 0.000 0.028 0.720 0.000 0.128 0.124
#> SRR1203131 6 0.6377 0.13625 0.000 0.020 0.232 0.000 0.312 0.436
#> SRR1203133 1 0.1807 0.86582 0.920 0.000 0.000 0.000 0.020 0.060
#> SRR1203138 1 0.2164 0.85498 0.900 0.000 0.000 0.000 0.032 0.068
#> SRR1203760 1 0.3679 0.84533 0.772 0.000 0.000 0.000 0.052 0.176
#> SRR1203761 1 0.3712 0.84335 0.768 0.000 0.000 0.000 0.052 0.180
#> SRR1203770 1 0.2263 0.87100 0.884 0.000 0.000 0.000 0.016 0.100
#> SRR1203771 1 0.2164 0.85498 0.900 0.000 0.000 0.000 0.032 0.068
#> SRR1203772 1 0.2221 0.86263 0.896 0.000 0.000 0.000 0.032 0.072
#> SRR1203773 1 0.3712 0.84335 0.768 0.000 0.000 0.000 0.052 0.180
#> SRR1203774 1 0.3744 0.84172 0.764 0.000 0.000 0.000 0.052 0.184
#> SRR1203775 1 0.3852 0.84591 0.764 0.000 0.000 0.004 0.052 0.180
#> SRR1203800 1 0.3744 0.84172 0.764 0.000 0.000 0.000 0.052 0.184
#> SRR1203801 1 0.3679 0.84553 0.772 0.000 0.000 0.000 0.052 0.176
#> SRR1203802 1 0.1480 0.87487 0.940 0.000 0.000 0.000 0.020 0.040
#> SRR1203803 1 0.1151 0.87819 0.956 0.000 0.000 0.000 0.012 0.032
#> SRR1203804 1 0.3712 0.84577 0.768 0.000 0.000 0.000 0.052 0.180
#> SRR1203805 1 0.3578 0.85283 0.784 0.000 0.000 0.000 0.052 0.164
#> SRR1203806 1 0.3588 0.84797 0.776 0.000 0.000 0.000 0.044 0.180
#> SRR1203807 1 0.3744 0.84172 0.764 0.000 0.000 0.000 0.052 0.184
#> SRR1203808 1 0.3744 0.84172 0.764 0.000 0.000 0.000 0.052 0.184
#> SRR1203811 1 0.3744 0.84172 0.764 0.000 0.000 0.000 0.052 0.184
#> SRR1203812 1 0.3432 0.85762 0.800 0.000 0.000 0.000 0.052 0.148
#> SRR1203813 1 0.2164 0.85498 0.900 0.000 0.000 0.000 0.032 0.068
#> SRR1203814 1 0.1088 0.87745 0.960 0.000 0.000 0.000 0.016 0.024
#> SRR1203815 1 0.3408 0.85452 0.800 0.000 0.000 0.000 0.048 0.152
#> SRR1203816 1 0.1010 0.87839 0.960 0.000 0.000 0.000 0.004 0.036
#> SRR1203817 1 0.1588 0.87651 0.924 0.000 0.000 0.000 0.004 0.072
#> SRR1203818 1 0.2221 0.85526 0.896 0.000 0.000 0.000 0.032 0.072
#> SRR1203819 1 0.1970 0.86101 0.912 0.000 0.000 0.000 0.028 0.060
#> SRR1203822 1 0.2106 0.85638 0.904 0.000 0.000 0.000 0.032 0.064
#> SRR1203823 1 0.1461 0.87704 0.940 0.000 0.000 0.000 0.016 0.044
#> SRR1203824 1 0.2060 0.87329 0.900 0.000 0.000 0.000 0.016 0.084
#> SRR1203825 1 0.2221 0.85492 0.896 0.000 0.000 0.000 0.032 0.072
#> SRR1203826 1 0.2487 0.86300 0.876 0.000 0.000 0.000 0.032 0.092
#> SRR1203827 4 0.0146 0.87689 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1203828 1 0.2164 0.85498 0.900 0.000 0.000 0.000 0.032 0.068
#> SRR1203829 1 0.2106 0.85606 0.904 0.000 0.000 0.000 0.032 0.064
#> SRR1203830 1 0.1908 0.86603 0.916 0.000 0.000 0.000 0.028 0.056
#> SRR1203831 1 0.3542 0.85279 0.788 0.000 0.000 0.000 0.052 0.160
#> SRR1203832 1 0.3578 0.85283 0.784 0.000 0.000 0.000 0.052 0.164
#> SRR1203833 1 0.3744 0.84172 0.764 0.000 0.000 0.000 0.052 0.184
#> SRR1203834 1 0.3481 0.85370 0.792 0.000 0.000 0.000 0.048 0.160
#> SRR1203835 1 0.1970 0.85913 0.912 0.000 0.000 0.000 0.028 0.060
#> SRR1203836 1 0.3679 0.84404 0.772 0.000 0.000 0.000 0.052 0.176
#> SRR1203837 1 0.1152 0.87611 0.952 0.000 0.000 0.000 0.004 0.044
#> SRR1203838 1 0.3612 0.84747 0.780 0.000 0.000 0.000 0.052 0.168
#> SRR1203839 1 0.0935 0.87782 0.964 0.000 0.000 0.000 0.004 0.032
#> SRR1203842 4 0.0146 0.87689 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1203843 1 0.3712 0.84183 0.768 0.000 0.000 0.000 0.052 0.180
#> SRR1203845 2 0.4670 0.67927 0.000 0.704 0.112 0.000 0.008 0.176
#> SRR1203844 6 0.5965 0.33775 0.000 0.316 0.140 0.000 0.024 0.520
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["SD", "NMF"]
# you can also extract it by
# res = res_list["SD:NMF"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'SD' method.
#> Subgroups are detected by 'NMF' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 2.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.3760 0.625 0.625
#> 3 3 0.642 0.738 0.879 0.4261 0.835 0.735
#> 4 4 0.677 0.770 0.899 -0.0145 0.944 0.890
#> 5 5 0.635 0.751 0.886 0.0335 0.954 0.909
#> 6 6 0.609 0.753 0.873 0.0320 0.990 0.978
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 2
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0.0000 1.000 0.000 1.000
#> SRR1201590 2 0.0000 1.000 0.000 1.000
#> SRR1201593 2 0.0000 1.000 0.000 1.000
#> SRR1201592 2 0.0000 1.000 0.000 1.000
#> SRR1201617 2 0.0000 1.000 0.000 1.000
#> SRR1201616 2 0.0000 1.000 0.000 1.000
#> SRR1201619 2 0.0000 1.000 0.000 1.000
#> SRR1201618 2 0.0000 1.000 0.000 1.000
#> SRR1201620 2 0.0000 1.000 0.000 1.000
#> SRR1201621 2 0.0000 1.000 0.000 1.000
#> SRR1201623 2 0.0000 1.000 0.000 1.000
#> SRR1201622 2 0.0000 1.000 0.000 1.000
#> SRR1201624 2 0.0000 1.000 0.000 1.000
#> SRR1201625 2 0.0000 1.000 0.000 1.000
#> SRR1201626 2 0.0000 1.000 0.000 1.000
#> SRR1201627 2 0.0000 1.000 0.000 1.000
#> SRR1201628 2 0.0000 1.000 0.000 1.000
#> SRR1201629 2 0.0000 1.000 0.000 1.000
#> SRR1201630 2 0.0000 1.000 0.000 1.000
#> SRR1201631 2 0.0000 1.000 0.000 1.000
#> SRR1201641 2 0.0000 1.000 0.000 1.000
#> SRR1201640 2 0.0000 1.000 0.000 1.000
#> SRR1201643 2 0.0000 1.000 0.000 1.000
#> SRR1201644 2 0.0000 1.000 0.000 1.000
#> SRR1201661 2 0.0000 1.000 0.000 1.000
#> SRR1201662 2 0.0000 1.000 0.000 1.000
#> SRR1201663 2 0.0000 1.000 0.000 1.000
#> SRR1201664 2 0.0000 1.000 0.000 1.000
#> SRR1201665 2 0.0000 1.000 0.000 1.000
#> SRR1201666 2 0.0000 1.000 0.000 1.000
#> SRR1201667 2 0.0000 1.000 0.000 1.000
#> SRR1201668 2 0.0000 1.000 0.000 1.000
#> SRR1201670 2 0.0000 1.000 0.000 1.000
#> SRR1201669 2 0.0000 1.000 0.000 1.000
#> SRR1201673 2 0.0000 1.000 0.000 1.000
#> SRR1201672 2 0.0000 1.000 0.000 1.000
#> SRR1201671 2 0.0000 1.000 0.000 1.000
#> SRR1201677 2 0.0000 1.000 0.000 1.000
#> SRR1201676 2 0.0000 1.000 0.000 1.000
#> SRR1201675 2 0.0000 1.000 0.000 1.000
#> SRR1201674 2 0.0000 1.000 0.000 1.000
#> SRR1201678 2 0.0000 1.000 0.000 1.000
#> SRR1201682 2 0.0000 1.000 0.000 1.000
#> SRR1201683 2 0.0000 1.000 0.000 1.000
#> SRR1201680 2 0.0000 1.000 0.000 1.000
#> SRR1201681 2 0.0000 1.000 0.000 1.000
#> SRR1201679 2 0.0000 1.000 0.000 1.000
#> SRR1201686 2 0.0000 1.000 0.000 1.000
#> SRR1201687 2 0.0000 1.000 0.000 1.000
#> SRR1201688 2 0.0000 1.000 0.000 1.000
#> SRR1201689 2 0.0000 1.000 0.000 1.000
#> SRR1201685 2 0.0000 1.000 0.000 1.000
#> SRR1201692 2 0.0000 1.000 0.000 1.000
#> SRR1201691 2 0.0000 1.000 0.000 1.000
#> SRR1201690 2 0.0000 1.000 0.000 1.000
#> SRR1201696 2 0.0000 1.000 0.000 1.000
#> SRR1201695 2 0.0000 1.000 0.000 1.000
#> SRR1201694 2 0.0000 1.000 0.000 1.000
#> SRR1201693 2 0.0000 1.000 0.000 1.000
#> SRR1201697 2 0.0000 1.000 0.000 1.000
#> SRR1201698 2 0.0000 1.000 0.000 1.000
#> SRR1201700 2 0.0000 1.000 0.000 1.000
#> SRR1201708 2 0.0000 1.000 0.000 1.000
#> SRR1201707 2 0.0000 1.000 0.000 1.000
#> SRR1201706 2 0.0000 1.000 0.000 1.000
#> SRR1201702 2 0.0000 1.000 0.000 1.000
#> SRR1201705 2 0.0000 1.000 0.000 1.000
#> SRR1201701 2 0.0000 1.000 0.000 1.000
#> SRR1201704 2 0.0000 1.000 0.000 1.000
#> SRR1201703 2 0.0000 1.000 0.000 1.000
#> SRR1201716 2 0.0000 1.000 0.000 1.000
#> SRR1201715 2 0.0000 1.000 0.000 1.000
#> SRR1201717 2 0.0000 1.000 0.000 1.000
#> SRR1201712 2 0.0000 1.000 0.000 1.000
#> SRR1201709 2 0.0000 1.000 0.000 1.000
#> SRR1201711 2 0.0000 1.000 0.000 1.000
#> SRR1201714 2 0.0000 1.000 0.000 1.000
#> SRR1201713 2 0.0000 1.000 0.000 1.000
#> SRR1201710 2 0.0000 1.000 0.000 1.000
#> SRR1201719 2 0.0000 1.000 0.000 1.000
#> SRR1201718 2 0.0000 1.000 0.000 1.000
#> SRR1201721 2 0.0000 1.000 0.000 1.000
#> SRR1201720 2 0.0000 1.000 0.000 1.000
#> SRR1201723 2 0.0000 1.000 0.000 1.000
#> SRR1201722 2 0.0000 1.000 0.000 1.000
#> SRR1201725 2 0.0000 1.000 0.000 1.000
#> SRR1201724 2 0.0000 1.000 0.000 1.000
#> SRR1201726 2 0.0000 1.000 0.000 1.000
#> SRR1201727 2 0.0000 1.000 0.000 1.000
#> SRR1201731 2 0.0000 1.000 0.000 1.000
#> SRR1201730 2 0.0000 1.000 0.000 1.000
#> SRR1201734 2 0.0000 1.000 0.000 1.000
#> SRR1201733 2 0.0000 1.000 0.000 1.000
#> SRR1201736 2 0.0000 1.000 0.000 1.000
#> SRR1201737 2 0.0000 1.000 0.000 1.000
#> SRR1201739 2 0.0000 1.000 0.000 1.000
#> SRR1201738 2 0.0000 1.000 0.000 1.000
#> SRR1201742 2 0.0000 1.000 0.000 1.000
#> SRR1201743 2 0.0000 1.000 0.000 1.000
#> SRR1201745 2 0.0000 1.000 0.000 1.000
#> SRR1201744 2 0.0000 1.000 0.000 1.000
#> SRR1201749 2 0.0000 1.000 0.000 1.000
#> SRR1201750 2 0.0000 1.000 0.000 1.000
#> SRR1201752 2 0.0000 1.000 0.000 1.000
#> SRR1201751 2 0.0000 1.000 0.000 1.000
#> SRR1201754 2 0.0000 1.000 0.000 1.000
#> SRR1201753 2 0.0000 1.000 0.000 1.000
#> SRR1201758 2 0.0000 1.000 0.000 1.000
#> SRR1201759 2 0.0000 1.000 0.000 1.000
#> SRR1201760 2 0.0000 1.000 0.000 1.000
#> SRR1201761 2 0.0000 1.000 0.000 1.000
#> SRR1201763 2 0.0000 1.000 0.000 1.000
#> SRR1201762 2 0.0000 1.000 0.000 1.000
#> SRR1201764 2 0.0000 1.000 0.000 1.000
#> SRR1201766 2 0.0000 1.000 0.000 1.000
#> SRR1201768 2 0.0000 1.000 0.000 1.000
#> SRR1201769 2 0.0000 1.000 0.000 1.000
#> SRR1201767 2 0.0000 1.000 0.000 1.000
#> SRR1201770 2 0.0000 1.000 0.000 1.000
#> SRR1201771 2 0.0000 1.000 0.000 1.000
#> SRR1201772 2 0.0000 1.000 0.000 1.000
#> SRR1201773 2 0.0000 1.000 0.000 1.000
#> SRR1201774 2 0.0000 1.000 0.000 1.000
#> SRR1201786 2 0.0000 1.000 0.000 1.000
#> SRR1201784 2 0.0000 1.000 0.000 1.000
#> SRR1201785 2 0.0000 1.000 0.000 1.000
#> SRR1201778 2 0.0000 1.000 0.000 1.000
#> SRR1201779 2 0.0000 1.000 0.000 1.000
#> SRR1201781 2 0.0000 1.000 0.000 1.000
#> SRR1201780 2 0.0000 1.000 0.000 1.000
#> SRR1201783 2 0.0000 1.000 0.000 1.000
#> SRR1201782 2 0.0000 1.000 0.000 1.000
#> SRR1201798 2 0.0000 1.000 0.000 1.000
#> SRR1201797 2 0.0000 1.000 0.000 1.000
#> SRR1201796 2 0.0000 1.000 0.000 1.000
#> SRR1201795 2 0.0000 1.000 0.000 1.000
#> SRR1201799 2 0.0000 1.000 0.000 1.000
#> SRR1201794 2 0.0000 1.000 0.000 1.000
#> SRR1201793 2 0.0000 1.000 0.000 1.000
#> SRR1201792 2 0.0000 1.000 0.000 1.000
#> SRR1201791 2 0.0000 1.000 0.000 1.000
#> SRR1201807 2 0.0000 1.000 0.000 1.000
#> SRR1201808 2 0.0000 1.000 0.000 1.000
#> SRR1201803 2 0.0000 1.000 0.000 1.000
#> SRR1201804 2 0.0000 1.000 0.000 1.000
#> SRR1201805 2 0.0000 1.000 0.000 1.000
#> SRR1201806 2 0.0000 1.000 0.000 1.000
#> SRR1201801 2 0.0000 1.000 0.000 1.000
#> SRR1201802 2 0.0000 1.000 0.000 1.000
#> SRR1201800 2 0.0000 1.000 0.000 1.000
#> SRR1201814 2 0.0000 1.000 0.000 1.000
#> SRR1201816 2 0.0000 1.000 0.000 1.000
#> SRR1201815 2 0.0000 1.000 0.000 1.000
#> SRR1201819 2 0.0000 1.000 0.000 1.000
#> SRR1201820 2 0.0000 1.000 0.000 1.000
#> SRR1201813 2 0.0000 1.000 0.000 1.000
#> SRR1201817 2 0.0000 1.000 0.000 1.000
#> SRR1201818 2 0.0000 1.000 0.000 1.000
#> SRR1201825 2 0.0000 1.000 0.000 1.000
#> SRR1201827 2 0.0000 1.000 0.000 1.000
#> SRR1201828 2 0.0000 1.000 0.000 1.000
#> SRR1201826 2 0.0000 1.000 0.000 1.000
#> SRR1201829 2 0.0000 1.000 0.000 1.000
#> SRR1201830 2 0.0000 1.000 0.000 1.000
#> SRR1201831 2 0.0000 1.000 0.000 1.000
#> SRR1201832 2 0.0000 1.000 0.000 1.000
#> SRR1201833 2 0.0000 1.000 0.000 1.000
#> SRR1201865 2 0.0000 1.000 0.000 1.000
#> SRR1201866 2 0.0000 1.000 0.000 1.000
#> SRR1201867 2 0.0000 1.000 0.000 1.000
#> SRR1201861 2 0.0000 1.000 0.000 1.000
#> SRR1201862 2 0.0000 1.000 0.000 1.000
#> SRR1201863 2 0.0000 1.000 0.000 1.000
#> SRR1201859 2 0.0000 1.000 0.000 1.000
#> SRR1201864 2 0.0000 1.000 0.000 1.000
#> SRR1201860 2 0.0000 1.000 0.000 1.000
#> SRR1201873 2 0.0000 1.000 0.000 1.000
#> SRR1201871 2 0.0000 1.000 0.000 1.000
#> SRR1201872 2 0.0000 1.000 0.000 1.000
#> SRR1201980 2 0.0000 1.000 0.000 1.000
#> SRR1201979 2 0.0000 1.000 0.000 1.000
#> SRR1201982 2 0.0000 1.000 0.000 1.000
#> SRR1201981 2 0.0000 1.000 0.000 1.000
#> SRR1201998 2 0.0000 1.000 0.000 1.000
#> SRR1201996 2 0.0000 1.000 0.000 1.000
#> SRR1201997 2 0.0000 1.000 0.000 1.000
#> SRR1202005 2 0.0000 1.000 0.000 1.000
#> SRR1202006 2 0.0000 1.000 0.000 1.000
#> SRR1202088 2 0.0000 1.000 0.000 1.000
#> SRR1202087 2 0.0000 1.000 0.000 1.000
#> SRR1202093 2 0.0000 1.000 0.000 1.000
#> SRR1202092 2 0.0000 1.000 0.000 1.000
#> SRR1202288 2 0.0000 1.000 0.000 1.000
#> SRR1202289 2 0.0000 1.000 0.000 1.000
#> SRR1202299 2 0.0000 1.000 0.000 1.000
#> SRR1202298 2 0.0000 1.000 0.000 1.000
#> SRR1202303 2 0.0000 1.000 0.000 1.000
#> SRR1202372 2 0.0000 1.000 0.000 1.000
#> SRR1202371 2 0.0000 1.000 0.000 1.000
#> SRR1202563 2 0.0000 1.000 0.000 1.000
#> SRR1202565 2 0.0000 1.000 0.000 1.000
#> SRR1202564 2 0.0000 1.000 0.000 1.000
#> SRR1202649 2 0.0000 1.000 0.000 1.000
#> SRR1202650 2 0.0000 1.000 0.000 1.000
#> SRR1202651 2 0.0000 1.000 0.000 1.000
#> SRR1202843 1 0.0000 1.000 1.000 0.000
#> SRR1202844 1 0.0000 1.000 1.000 0.000
#> SRR1202845 2 0.0000 1.000 0.000 1.000
#> SRR1202847 2 0.0000 1.000 0.000 1.000
#> SRR1202846 2 0.0000 1.000 0.000 1.000
#> SRR1202945 1 0.0000 1.000 1.000 0.000
#> SRR1202949 1 0.0000 1.000 1.000 0.000
#> SRR1202977 1 0.0000 1.000 1.000 0.000
#> SRR1202978 1 0.0000 1.000 1.000 0.000
#> SRR1202979 1 0.0000 1.000 1.000 0.000
#> SRR1202990 1 0.0000 1.000 1.000 0.000
#> SRR1202999 1 0.0000 1.000 1.000 0.000
#> SRR1203005 1 0.0000 1.000 1.000 0.000
#> SRR1203006 1 0.0000 1.000 1.000 0.000
#> SRR1203007 1 0.0000 1.000 1.000 0.000
#> SRR1203009 1 0.0376 0.996 0.996 0.004
#> SRR1203008 1 0.1414 0.980 0.980 0.020
#> SRR1203010 1 0.0000 1.000 1.000 0.000
#> SRR1203011 1 0.0000 1.000 1.000 0.000
#> SRR1203025 1 0.0000 1.000 1.000 0.000
#> SRR1203026 1 0.0000 1.000 1.000 0.000
#> SRR1203027 1 0.0000 1.000 1.000 0.000
#> SRR1203061 1 0.0000 1.000 1.000 0.000
#> SRR1203089 1 0.0000 1.000 1.000 0.000
#> SRR1203125 1 0.0000 1.000 1.000 0.000
#> SRR1203128 1 0.0000 1.000 1.000 0.000
#> SRR1203129 1 0.0000 1.000 1.000 0.000
#> SRR1203130 1 0.0000 1.000 1.000 0.000
#> SRR1203132 2 0.0000 1.000 0.000 1.000
#> SRR1203131 2 0.0000 1.000 0.000 1.000
#> SRR1203133 1 0.0000 1.000 1.000 0.000
#> SRR1203138 1 0.0000 1.000 1.000 0.000
#> SRR1203760 1 0.0000 1.000 1.000 0.000
#> SRR1203761 1 0.0000 1.000 1.000 0.000
#> SRR1203770 1 0.0000 1.000 1.000 0.000
#> SRR1203771 1 0.0000 1.000 1.000 0.000
#> SRR1203772 1 0.0000 1.000 1.000 0.000
#> SRR1203773 1 0.0000 1.000 1.000 0.000
#> SRR1203774 1 0.0000 1.000 1.000 0.000
#> SRR1203775 1 0.0000 1.000 1.000 0.000
#> SRR1203800 1 0.0000 1.000 1.000 0.000
#> SRR1203801 1 0.0000 1.000 1.000 0.000
#> SRR1203802 1 0.0000 1.000 1.000 0.000
#> SRR1203803 1 0.0000 1.000 1.000 0.000
#> SRR1203804 1 0.0000 1.000 1.000 0.000
#> SRR1203805 1 0.0000 1.000 1.000 0.000
#> SRR1203806 1 0.0000 1.000 1.000 0.000
#> SRR1203807 1 0.0000 1.000 1.000 0.000
#> SRR1203808 1 0.0000 1.000 1.000 0.000
#> SRR1203811 1 0.0000 1.000 1.000 0.000
#> SRR1203812 1 0.0000 1.000 1.000 0.000
#> SRR1203813 1 0.0000 1.000 1.000 0.000
#> SRR1203814 1 0.0000 1.000 1.000 0.000
#> SRR1203815 1 0.0000 1.000 1.000 0.000
#> SRR1203816 1 0.0000 1.000 1.000 0.000
#> SRR1203817 1 0.0000 1.000 1.000 0.000
#> SRR1203818 1 0.0000 1.000 1.000 0.000
#> SRR1203819 1 0.0000 1.000 1.000 0.000
#> SRR1203822 1 0.0000 1.000 1.000 0.000
#> SRR1203823 1 0.0000 1.000 1.000 0.000
#> SRR1203824 1 0.0000 1.000 1.000 0.000
#> SRR1203825 1 0.0000 1.000 1.000 0.000
#> SRR1203826 1 0.0000 1.000 1.000 0.000
#> SRR1203827 2 0.0000 1.000 0.000 1.000
#> SRR1203828 1 0.0000 1.000 1.000 0.000
#> SRR1203829 1 0.0000 1.000 1.000 0.000
#> SRR1203830 1 0.0000 1.000 1.000 0.000
#> SRR1203831 1 0.0000 1.000 1.000 0.000
#> SRR1203832 1 0.0000 1.000 1.000 0.000
#> SRR1203833 1 0.0000 1.000 1.000 0.000
#> SRR1203834 1 0.0000 1.000 1.000 0.000
#> SRR1203835 1 0.0000 1.000 1.000 0.000
#> SRR1203836 1 0.0000 1.000 1.000 0.000
#> SRR1203837 1 0.0000 1.000 1.000 0.000
#> SRR1203838 1 0.0000 1.000 1.000 0.000
#> SRR1203839 1 0.0000 1.000 1.000 0.000
#> SRR1203842 2 0.0000 1.000 0.000 1.000
#> SRR1203843 1 0.0000 1.000 1.000 0.000
#> SRR1203845 2 0.0000 1.000 0.000 1.000
#> SRR1203844 2 0.0000 1.000 0.000 1.000
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0.0592 0.7960 0.000 0.988 0.012
#> SRR1201590 2 0.1289 0.8010 0.000 0.968 0.032
#> SRR1201593 2 0.0747 0.7934 0.000 0.984 0.016
#> SRR1201592 2 0.0592 0.7960 0.000 0.988 0.012
#> SRR1201617 2 0.0892 0.7904 0.000 0.980 0.020
#> SRR1201616 2 0.0592 0.7960 0.000 0.988 0.012
#> SRR1201619 2 0.2625 0.7828 0.000 0.916 0.084
#> SRR1201618 2 0.4887 0.6353 0.000 0.772 0.228
#> SRR1201620 2 0.0892 0.7935 0.000 0.980 0.020
#> SRR1201621 2 0.0892 0.7904 0.000 0.980 0.020
#> SRR1201623 2 0.6095 0.0878 0.000 0.608 0.392
#> SRR1201622 3 0.6026 0.7361 0.000 0.376 0.624
#> SRR1201624 3 0.3752 0.7060 0.000 0.144 0.856
#> SRR1201625 3 0.5058 0.7938 0.000 0.244 0.756
#> SRR1201626 3 0.3340 0.6815 0.000 0.120 0.880
#> SRR1201627 3 0.5650 0.7914 0.000 0.312 0.688
#> SRR1201628 2 0.5988 0.2106 0.000 0.632 0.368
#> SRR1201629 2 0.4555 0.6748 0.000 0.800 0.200
#> SRR1201630 2 0.1753 0.7970 0.000 0.952 0.048
#> SRR1201631 2 0.0592 0.8019 0.000 0.988 0.012
#> SRR1201641 2 0.1529 0.7989 0.000 0.960 0.040
#> SRR1201640 2 0.2448 0.7868 0.000 0.924 0.076
#> SRR1201643 2 0.3941 0.7293 0.000 0.844 0.156
#> SRR1201644 2 0.3116 0.7680 0.000 0.892 0.108
#> SRR1201661 2 0.1643 0.7983 0.000 0.956 0.044
#> SRR1201662 2 0.0592 0.8014 0.000 0.988 0.012
#> SRR1201663 3 0.5138 0.7987 0.000 0.252 0.748
#> SRR1201664 3 0.5497 0.8019 0.000 0.292 0.708
#> SRR1201665 2 0.3412 0.7597 0.000 0.876 0.124
#> SRR1201666 2 0.1411 0.8015 0.000 0.964 0.036
#> SRR1201667 2 0.1289 0.8008 0.000 0.968 0.032
#> SRR1201668 3 0.4974 0.7882 0.000 0.236 0.764
#> SRR1201670 3 0.5431 0.8039 0.000 0.284 0.716
#> SRR1201669 3 0.5431 0.8039 0.000 0.284 0.716
#> SRR1201673 2 0.4504 0.6839 0.000 0.804 0.196
#> SRR1201672 2 0.4452 0.6893 0.000 0.808 0.192
#> SRR1201671 2 0.6168 -0.0029 0.000 0.588 0.412
#> SRR1201677 2 0.4452 0.6893 0.000 0.808 0.192
#> SRR1201676 2 0.4504 0.6839 0.000 0.804 0.196
#> SRR1201675 2 0.4346 0.7000 0.000 0.816 0.184
#> SRR1201674 2 0.4346 0.6982 0.000 0.816 0.184
#> SRR1201678 2 0.4346 0.7000 0.000 0.816 0.184
#> SRR1201682 2 0.0747 0.8018 0.000 0.984 0.016
#> SRR1201683 2 0.0892 0.8017 0.000 0.980 0.020
#> SRR1201680 2 0.0892 0.8017 0.000 0.980 0.020
#> SRR1201681 2 0.0892 0.8017 0.000 0.980 0.020
#> SRR1201679 2 0.2165 0.7932 0.000 0.936 0.064
#> SRR1201686 3 0.5254 0.8038 0.000 0.264 0.736
#> SRR1201687 3 0.5254 0.8038 0.000 0.264 0.736
#> SRR1201688 3 0.5254 0.8038 0.000 0.264 0.736
#> SRR1201689 3 0.5254 0.8038 0.000 0.264 0.736
#> SRR1201685 3 0.4702 0.7677 0.000 0.212 0.788
#> SRR1201692 2 0.4235 0.7060 0.000 0.824 0.176
#> SRR1201691 2 0.4178 0.7104 0.000 0.828 0.172
#> SRR1201690 2 0.5988 0.2160 0.000 0.632 0.368
#> SRR1201696 2 0.4062 0.7195 0.000 0.836 0.164
#> SRR1201695 2 0.4062 0.7195 0.000 0.836 0.164
#> SRR1201694 2 0.4062 0.7195 0.000 0.836 0.164
#> SRR1201693 2 0.4121 0.7150 0.000 0.832 0.168
#> SRR1201697 2 0.4062 0.7195 0.000 0.836 0.164
#> SRR1201698 2 0.3879 0.7314 0.000 0.848 0.152
#> SRR1201700 3 0.6140 0.6953 0.000 0.404 0.596
#> SRR1201708 2 0.6244 -0.1602 0.000 0.560 0.440
#> SRR1201707 2 0.6267 -0.2204 0.000 0.548 0.452
#> SRR1201706 2 0.6235 -0.1416 0.000 0.564 0.436
#> SRR1201702 2 0.6244 -0.1602 0.000 0.560 0.440
#> SRR1201705 2 0.6235 -0.1416 0.000 0.564 0.436
#> SRR1201701 2 0.6267 -0.2219 0.000 0.548 0.452
#> SRR1201704 2 0.6252 -0.1810 0.000 0.556 0.444
#> SRR1201703 2 0.6267 -0.2204 0.000 0.548 0.452
#> SRR1201716 3 0.6291 0.5583 0.000 0.468 0.532
#> SRR1201715 3 0.6291 0.5583 0.000 0.468 0.532
#> SRR1201717 3 0.6291 0.5583 0.000 0.468 0.532
#> SRR1201712 3 0.6291 0.5583 0.000 0.468 0.532
#> SRR1201709 3 0.6026 0.7359 0.000 0.376 0.624
#> SRR1201711 3 0.6291 0.5583 0.000 0.468 0.532
#> SRR1201714 3 0.6291 0.5583 0.000 0.468 0.532
#> SRR1201713 3 0.6291 0.5583 0.000 0.468 0.532
#> SRR1201710 3 0.6291 0.5583 0.000 0.468 0.532
#> SRR1201719 2 0.0592 0.8014 0.000 0.988 0.012
#> SRR1201718 2 0.1529 0.7987 0.000 0.960 0.040
#> SRR1201721 2 0.5254 0.5521 0.000 0.736 0.264
#> SRR1201720 2 0.6274 -0.2407 0.000 0.544 0.456
#> SRR1201723 3 0.5497 0.8019 0.000 0.292 0.708
#> SRR1201722 3 0.5138 0.7987 0.000 0.252 0.748
#> SRR1201725 2 0.0892 0.8017 0.000 0.980 0.020
#> SRR1201724 2 0.2448 0.7868 0.000 0.924 0.076
#> SRR1201726 3 0.5760 0.7815 0.000 0.328 0.672
#> SRR1201727 2 0.6308 -0.4157 0.000 0.508 0.492
#> SRR1201731 2 0.4555 0.6747 0.000 0.800 0.200
#> SRR1201730 2 0.5327 0.5342 0.000 0.728 0.272
#> SRR1201734 2 0.0237 0.7994 0.000 0.996 0.004
#> SRR1201733 2 0.1411 0.8017 0.000 0.964 0.036
#> SRR1201736 2 0.4931 0.6318 0.000 0.768 0.232
#> SRR1201737 2 0.3267 0.7630 0.000 0.884 0.116
#> SRR1201739 2 0.0892 0.8022 0.000 0.980 0.020
#> SRR1201738 2 0.2625 0.7848 0.000 0.916 0.084
#> SRR1201742 2 0.5733 0.3969 0.000 0.676 0.324
#> SRR1201743 2 0.3752 0.7411 0.000 0.856 0.144
#> SRR1201745 2 0.1289 0.7782 0.000 0.968 0.032
#> SRR1201744 2 0.2261 0.7655 0.000 0.932 0.068
#> SRR1201749 2 0.2711 0.7828 0.000 0.912 0.088
#> SRR1201750 2 0.0747 0.8023 0.000 0.984 0.016
#> SRR1201752 2 0.5016 0.6066 0.000 0.760 0.240
#> SRR1201751 2 0.5835 0.3311 0.000 0.660 0.340
#> SRR1201754 2 0.0592 0.7960 0.000 0.988 0.012
#> SRR1201753 2 0.0592 0.7960 0.000 0.988 0.012
#> SRR1201758 3 0.4062 0.7245 0.000 0.164 0.836
#> SRR1201759 3 0.4931 0.7851 0.000 0.232 0.768
#> SRR1201760 2 0.6062 0.1315 0.000 0.616 0.384
#> SRR1201761 2 0.5497 0.4802 0.000 0.708 0.292
#> SRR1201763 3 0.5363 0.8045 0.000 0.276 0.724
#> SRR1201762 3 0.3192 0.6732 0.000 0.112 0.888
#> SRR1201764 3 0.6111 0.7086 0.000 0.396 0.604
#> SRR1201766 2 0.0237 0.8016 0.000 0.996 0.004
#> SRR1201768 2 0.0000 0.8006 0.000 1.000 0.000
#> SRR1201769 2 0.0000 0.8006 0.000 1.000 0.000
#> SRR1201767 2 0.0000 0.8006 0.000 1.000 0.000
#> SRR1201770 2 0.0000 0.8006 0.000 1.000 0.000
#> SRR1201771 2 0.0000 0.8006 0.000 1.000 0.000
#> SRR1201772 2 0.0000 0.8006 0.000 1.000 0.000
#> SRR1201773 2 0.0000 0.8006 0.000 1.000 0.000
#> SRR1201774 2 0.0000 0.8006 0.000 1.000 0.000
#> SRR1201786 2 0.0237 0.7994 0.000 0.996 0.004
#> SRR1201784 2 0.0237 0.7994 0.000 0.996 0.004
#> SRR1201785 2 0.0237 0.7994 0.000 0.996 0.004
#> SRR1201778 2 0.0237 0.8012 0.000 0.996 0.004
#> SRR1201779 2 0.0000 0.8006 0.000 1.000 0.000
#> SRR1201781 2 0.0237 0.7994 0.000 0.996 0.004
#> SRR1201780 2 0.0000 0.8006 0.000 1.000 0.000
#> SRR1201783 2 0.0237 0.7994 0.000 0.996 0.004
#> SRR1201782 2 0.0237 0.7994 0.000 0.996 0.004
#> SRR1201798 2 0.0592 0.7960 0.000 0.988 0.012
#> SRR1201797 2 0.0592 0.7960 0.000 0.988 0.012
#> SRR1201796 2 0.0592 0.7960 0.000 0.988 0.012
#> SRR1201795 2 0.0592 0.7960 0.000 0.988 0.012
#> SRR1201799 2 0.0592 0.7960 0.000 0.988 0.012
#> SRR1201794 2 0.0592 0.7960 0.000 0.988 0.012
#> SRR1201793 2 0.0592 0.7960 0.000 0.988 0.012
#> SRR1201792 2 0.0592 0.7960 0.000 0.988 0.012
#> SRR1201791 2 0.0424 0.7978 0.000 0.992 0.008
#> SRR1201807 2 0.0892 0.7904 0.000 0.980 0.020
#> SRR1201808 2 0.0892 0.7904 0.000 0.980 0.020
#> SRR1201803 2 0.0892 0.7904 0.000 0.980 0.020
#> SRR1201804 2 0.0892 0.7904 0.000 0.980 0.020
#> SRR1201805 2 0.0892 0.7904 0.000 0.980 0.020
#> SRR1201806 2 0.0892 0.7904 0.000 0.980 0.020
#> SRR1201801 2 0.0892 0.7904 0.000 0.980 0.020
#> SRR1201802 2 0.0892 0.7904 0.000 0.980 0.020
#> SRR1201800 2 0.0892 0.7904 0.000 0.980 0.020
#> SRR1201814 2 0.0747 0.7934 0.000 0.984 0.016
#> SRR1201816 2 0.0747 0.7934 0.000 0.984 0.016
#> SRR1201815 2 0.0747 0.7934 0.000 0.984 0.016
#> SRR1201819 2 0.0747 0.7934 0.000 0.984 0.016
#> SRR1201820 2 0.0747 0.7934 0.000 0.984 0.016
#> SRR1201813 2 0.0424 0.8007 0.000 0.992 0.008
#> SRR1201817 2 0.0747 0.7934 0.000 0.984 0.016
#> SRR1201818 2 0.0747 0.7934 0.000 0.984 0.016
#> SRR1201825 3 0.5810 0.7752 0.000 0.336 0.664
#> SRR1201827 2 0.2625 0.7827 0.000 0.916 0.084
#> SRR1201828 2 0.2625 0.7827 0.000 0.916 0.084
#> SRR1201826 2 0.5254 0.5584 0.000 0.736 0.264
#> SRR1201829 2 0.2625 0.7827 0.000 0.916 0.084
#> SRR1201830 2 0.2537 0.7846 0.000 0.920 0.080
#> SRR1201831 2 0.2625 0.7827 0.000 0.916 0.084
#> SRR1201832 2 0.2625 0.7827 0.000 0.916 0.084
#> SRR1201833 2 0.2625 0.7827 0.000 0.916 0.084
#> SRR1201865 2 0.4796 0.6450 0.000 0.780 0.220
#> SRR1201866 2 0.4842 0.6379 0.000 0.776 0.224
#> SRR1201867 2 0.4842 0.6378 0.000 0.776 0.224
#> SRR1201861 2 0.4842 0.6378 0.000 0.776 0.224
#> SRR1201862 2 0.4750 0.6517 0.000 0.784 0.216
#> SRR1201863 2 0.4750 0.6517 0.000 0.784 0.216
#> SRR1201859 2 0.6308 -0.4135 0.000 0.508 0.492
#> SRR1201864 2 0.4750 0.6517 0.000 0.784 0.216
#> SRR1201860 2 0.4887 0.6304 0.000 0.772 0.228
#> SRR1201873 2 0.6267 -0.2407 0.000 0.548 0.452
#> SRR1201871 3 0.6154 0.6927 0.000 0.408 0.592
#> SRR1201872 2 0.6225 -0.1367 0.000 0.568 0.432
#> SRR1201980 2 0.4750 0.6520 0.000 0.784 0.216
#> SRR1201979 2 0.6180 -0.0289 0.000 0.584 0.416
#> SRR1201982 2 0.4062 0.7204 0.000 0.836 0.164
#> SRR1201981 2 0.5859 0.3201 0.000 0.656 0.344
#> SRR1201998 2 0.2261 0.7899 0.000 0.932 0.068
#> SRR1201996 2 0.2878 0.7760 0.000 0.904 0.096
#> SRR1201997 2 0.1860 0.7957 0.000 0.948 0.052
#> SRR1202005 2 0.0592 0.7998 0.000 0.988 0.012
#> SRR1202006 2 0.0747 0.7934 0.000 0.984 0.016
#> SRR1202088 2 0.6291 -0.2989 0.000 0.532 0.468
#> SRR1202087 3 0.6111 0.7091 0.000 0.396 0.604
#> SRR1202093 2 0.3686 0.7461 0.000 0.860 0.140
#> SRR1202092 2 0.5254 0.5614 0.000 0.736 0.264
#> SRR1202288 2 0.1529 0.7966 0.000 0.960 0.040
#> SRR1202289 2 0.0592 0.7960 0.000 0.988 0.012
#> SRR1202299 2 0.0892 0.7904 0.000 0.980 0.020
#> SRR1202298 2 0.0592 0.7960 0.000 0.988 0.012
#> SRR1202303 2 0.3941 0.7318 0.000 0.844 0.156
#> SRR1202372 2 0.0592 0.7960 0.000 0.988 0.012
#> SRR1202371 2 0.1289 0.8015 0.000 0.968 0.032
#> SRR1202563 2 0.4702 0.6647 0.000 0.788 0.212
#> SRR1202565 2 0.1964 0.7942 0.000 0.944 0.056
#> SRR1202564 2 0.1860 0.7957 0.000 0.948 0.052
#> SRR1202649 2 0.6302 -0.3516 0.000 0.520 0.480
#> SRR1202650 2 0.3038 0.7712 0.000 0.896 0.104
#> SRR1202651 2 0.0592 0.7960 0.000 0.988 0.012
#> SRR1202843 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1202845 2 0.0892 0.8021 0.000 0.980 0.020
#> SRR1202847 2 0.0237 0.7994 0.000 0.996 0.004
#> SRR1202846 2 0.0237 0.7994 0.000 0.996 0.004
#> SRR1202945 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203009 1 0.2096 0.9566 0.944 0.004 0.052
#> SRR1203008 1 0.1620 0.9667 0.964 0.012 0.024
#> SRR1203010 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203132 2 0.4654 0.6640 0.000 0.792 0.208
#> SRR1203131 2 0.6252 -0.1794 0.000 0.556 0.444
#> SRR1203133 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203827 3 0.2711 0.6481 0.000 0.088 0.912
#> SRR1203828 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203842 3 0.5948 0.4108 0.000 0.360 0.640
#> SRR1203843 1 0.0000 0.9989 1.000 0.000 0.000
#> SRR1203845 2 0.1031 0.7866 0.000 0.976 0.024
#> SRR1203844 2 0.1031 0.7867 0.000 0.976 0.024
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.0921 0.8432 0.000 0.972 0.000 0.028
#> SRR1201590 2 0.0469 0.8496 0.000 0.988 0.000 0.012
#> SRR1201593 2 0.1637 0.8227 0.000 0.940 0.000 0.060
#> SRR1201592 2 0.1302 0.8350 0.000 0.956 0.000 0.044
#> SRR1201617 2 0.1557 0.8258 0.000 0.944 0.000 0.056
#> SRR1201616 2 0.1557 0.8265 0.000 0.944 0.000 0.056
#> SRR1201619 2 0.1284 0.8459 0.000 0.964 0.024 0.012
#> SRR1201618 2 0.2334 0.8230 0.000 0.908 0.088 0.004
#> SRR1201620 2 0.1867 0.8144 0.000 0.928 0.000 0.072
#> SRR1201621 2 0.1637 0.8227 0.000 0.940 0.000 0.060
#> SRR1201623 2 0.4831 0.5133 0.000 0.704 0.280 0.016
#> SRR1201622 3 0.4992 0.4340 0.000 0.476 0.524 0.000
#> SRR1201624 3 0.3090 0.0787 0.000 0.056 0.888 0.056
#> SRR1201625 3 0.4053 0.6227 0.000 0.228 0.768 0.004
#> SRR1201626 3 0.5627 -0.2286 0.000 0.068 0.692 0.240
#> SRR1201627 3 0.5600 0.6742 0.000 0.376 0.596 0.028
#> SRR1201628 2 0.4098 0.6813 0.000 0.784 0.204 0.012
#> SRR1201629 2 0.3335 0.7838 0.000 0.860 0.120 0.020
#> SRR1201630 2 0.0336 0.8509 0.000 0.992 0.008 0.000
#> SRR1201631 2 0.0657 0.8507 0.000 0.984 0.004 0.012
#> SRR1201641 2 0.0672 0.8501 0.000 0.984 0.008 0.008
#> SRR1201640 2 0.1042 0.8484 0.000 0.972 0.020 0.008
#> SRR1201643 2 0.2473 0.8207 0.000 0.908 0.080 0.012
#> SRR1201644 2 0.2101 0.8315 0.000 0.928 0.060 0.012
#> SRR1201661 2 0.0469 0.8513 0.000 0.988 0.000 0.012
#> SRR1201662 2 0.0817 0.8450 0.000 0.976 0.000 0.024
#> SRR1201663 3 0.4122 0.6337 0.000 0.236 0.760 0.004
#> SRR1201664 3 0.4936 0.6930 0.000 0.372 0.624 0.004
#> SRR1201665 2 0.1209 0.8484 0.000 0.964 0.004 0.032
#> SRR1201666 2 0.0336 0.8504 0.000 0.992 0.000 0.008
#> SRR1201667 2 0.0188 0.8509 0.000 0.996 0.000 0.004
#> SRR1201668 3 0.4139 0.5183 0.000 0.176 0.800 0.024
#> SRR1201670 3 0.4950 0.6865 0.000 0.376 0.620 0.004
#> SRR1201669 3 0.4920 0.6965 0.000 0.368 0.628 0.004
#> SRR1201673 2 0.2522 0.8212 0.000 0.908 0.076 0.016
#> SRR1201672 2 0.2522 0.8212 0.000 0.908 0.076 0.016
#> SRR1201671 2 0.3836 0.7320 0.000 0.816 0.168 0.016
#> SRR1201677 2 0.2522 0.8212 0.000 0.908 0.076 0.016
#> SRR1201676 2 0.2593 0.8186 0.000 0.904 0.080 0.016
#> SRR1201675 2 0.2522 0.8212 0.000 0.908 0.076 0.016
#> SRR1201674 2 0.2522 0.8212 0.000 0.908 0.076 0.016
#> SRR1201678 2 0.2522 0.8212 0.000 0.908 0.076 0.016
#> SRR1201682 2 0.0188 0.8509 0.000 0.996 0.000 0.004
#> SRR1201683 2 0.0188 0.8509 0.000 0.996 0.000 0.004
#> SRR1201680 2 0.0188 0.8509 0.000 0.996 0.000 0.004
#> SRR1201681 2 0.0188 0.8509 0.000 0.996 0.000 0.004
#> SRR1201679 2 0.0336 0.8515 0.000 0.992 0.000 0.008
#> SRR1201686 3 0.4406 0.6936 0.000 0.300 0.700 0.000
#> SRR1201687 3 0.4406 0.6936 0.000 0.300 0.700 0.000
#> SRR1201688 3 0.4406 0.6936 0.000 0.300 0.700 0.000
#> SRR1201689 3 0.4431 0.6948 0.000 0.304 0.696 0.000
#> SRR1201685 3 0.3749 0.3887 0.000 0.128 0.840 0.032
#> SRR1201692 2 0.2973 0.8057 0.000 0.884 0.096 0.020
#> SRR1201691 2 0.2909 0.8087 0.000 0.888 0.092 0.020
#> SRR1201690 2 0.4012 0.7064 0.000 0.800 0.184 0.016
#> SRR1201696 2 0.2949 0.8098 0.000 0.888 0.088 0.024
#> SRR1201695 2 0.2949 0.8098 0.000 0.888 0.088 0.024
#> SRR1201694 2 0.2909 0.8087 0.000 0.888 0.092 0.020
#> SRR1201693 2 0.3015 0.8068 0.000 0.884 0.092 0.024
#> SRR1201697 2 0.2949 0.8098 0.000 0.888 0.088 0.024
#> SRR1201698 2 0.2489 0.8249 0.000 0.912 0.068 0.020
#> SRR1201700 2 0.5285 -0.2535 0.000 0.524 0.468 0.008
#> SRR1201708 2 0.4883 0.4925 0.000 0.696 0.288 0.016
#> SRR1201707 2 0.4908 0.4819 0.000 0.692 0.292 0.016
#> SRR1201706 2 0.4883 0.4925 0.000 0.696 0.288 0.016
#> SRR1201702 2 0.4883 0.4925 0.000 0.696 0.288 0.016
#> SRR1201705 2 0.4883 0.4925 0.000 0.696 0.288 0.016
#> SRR1201701 2 0.4933 0.4707 0.000 0.688 0.296 0.016
#> SRR1201704 2 0.4883 0.4925 0.000 0.696 0.288 0.016
#> SRR1201703 2 0.4933 0.4707 0.000 0.688 0.296 0.016
#> SRR1201716 2 0.5277 -0.2128 0.000 0.532 0.460 0.008
#> SRR1201715 2 0.5273 -0.1938 0.000 0.536 0.456 0.008
#> SRR1201717 2 0.5273 -0.1941 0.000 0.536 0.456 0.008
#> SRR1201712 2 0.5273 -0.1938 0.000 0.536 0.456 0.008
#> SRR1201709 3 0.5126 0.5381 0.000 0.444 0.552 0.004
#> SRR1201711 2 0.5273 -0.1938 0.000 0.536 0.456 0.008
#> SRR1201714 2 0.5268 -0.1749 0.000 0.540 0.452 0.008
#> SRR1201713 2 0.5273 -0.1938 0.000 0.536 0.456 0.008
#> SRR1201710 2 0.5263 -0.1560 0.000 0.544 0.448 0.008
#> SRR1201719 2 0.0592 0.8480 0.000 0.984 0.000 0.016
#> SRR1201718 2 0.0469 0.8514 0.000 0.988 0.000 0.012
#> SRR1201721 2 0.3495 0.7653 0.000 0.844 0.140 0.016
#> SRR1201720 2 0.4576 0.5675 0.000 0.728 0.260 0.012
#> SRR1201723 3 0.4920 0.6964 0.000 0.368 0.628 0.004
#> SRR1201722 3 0.4319 0.6179 0.000 0.228 0.760 0.012
#> SRR1201725 2 0.0336 0.8515 0.000 0.992 0.000 0.008
#> SRR1201724 2 0.0336 0.8510 0.000 0.992 0.008 0.000
#> SRR1201726 3 0.5088 0.5902 0.000 0.424 0.572 0.004
#> SRR1201727 2 0.5231 0.1579 0.000 0.604 0.384 0.012
#> SRR1201731 2 0.3099 0.7989 0.000 0.876 0.104 0.020
#> SRR1201730 2 0.3280 0.7824 0.000 0.860 0.124 0.016
#> SRR1201734 2 0.0921 0.8432 0.000 0.972 0.000 0.028
#> SRR1201733 2 0.1557 0.8302 0.000 0.944 0.000 0.056
#> SRR1201736 2 0.2198 0.8319 0.000 0.920 0.072 0.008
#> SRR1201737 2 0.1388 0.8450 0.000 0.960 0.028 0.012
#> SRR1201739 2 0.0592 0.8480 0.000 0.984 0.000 0.016
#> SRR1201738 2 0.0336 0.8511 0.000 0.992 0.000 0.008
#> SRR1201742 2 0.2805 0.8114 0.000 0.888 0.100 0.012
#> SRR1201743 2 0.2021 0.8332 0.000 0.932 0.056 0.012
#> SRR1201745 2 0.2197 0.8014 0.000 0.916 0.004 0.080
#> SRR1201744 2 0.3768 0.6578 0.000 0.808 0.008 0.184
#> SRR1201749 2 0.0927 0.8521 0.000 0.976 0.008 0.016
#> SRR1201750 2 0.0000 0.8509 0.000 1.000 0.000 0.000
#> SRR1201752 2 0.3335 0.7780 0.000 0.856 0.128 0.016
#> SRR1201751 2 0.3925 0.7177 0.000 0.808 0.176 0.016
#> SRR1201754 2 0.1302 0.8344 0.000 0.956 0.000 0.044
#> SRR1201753 2 0.1302 0.8345 0.000 0.956 0.000 0.044
#> SRR1201758 3 0.2830 0.1560 0.000 0.060 0.900 0.040
#> SRR1201759 3 0.3088 0.4169 0.000 0.128 0.864 0.008
#> SRR1201760 2 0.4468 0.6217 0.000 0.752 0.232 0.016
#> SRR1201761 2 0.4012 0.7061 0.000 0.800 0.184 0.016
#> SRR1201763 3 0.5149 0.6968 0.000 0.336 0.648 0.016
#> SRR1201762 3 0.2949 -0.0924 0.000 0.024 0.888 0.088
#> SRR1201764 2 0.6052 0.3226 0.000 0.640 0.284 0.076
#> SRR1201766 2 0.0188 0.8508 0.000 0.996 0.000 0.004
#> SRR1201768 2 0.0336 0.8513 0.000 0.992 0.000 0.008
#> SRR1201769 2 0.0336 0.8513 0.000 0.992 0.000 0.008
#> SRR1201767 2 0.0336 0.8513 0.000 0.992 0.000 0.008
#> SRR1201770 2 0.0188 0.8508 0.000 0.996 0.000 0.004
#> SRR1201771 2 0.0188 0.8508 0.000 0.996 0.000 0.004
#> SRR1201772 2 0.0336 0.8513 0.000 0.992 0.000 0.008
#> SRR1201773 2 0.0336 0.8513 0.000 0.992 0.000 0.008
#> SRR1201774 2 0.0336 0.8513 0.000 0.992 0.000 0.008
#> SRR1201786 2 0.0188 0.8508 0.000 0.996 0.000 0.004
#> SRR1201784 2 0.0188 0.8508 0.000 0.996 0.000 0.004
#> SRR1201785 2 0.0188 0.8508 0.000 0.996 0.000 0.004
#> SRR1201778 2 0.0707 0.8469 0.000 0.980 0.000 0.020
#> SRR1201779 2 0.0188 0.8508 0.000 0.996 0.000 0.004
#> SRR1201781 2 0.0188 0.8508 0.000 0.996 0.000 0.004
#> SRR1201780 2 0.0188 0.8508 0.000 0.996 0.000 0.004
#> SRR1201783 2 0.0188 0.8508 0.000 0.996 0.000 0.004
#> SRR1201782 2 0.0188 0.8508 0.000 0.996 0.000 0.004
#> SRR1201798 2 0.1118 0.8394 0.000 0.964 0.000 0.036
#> SRR1201797 2 0.1118 0.8394 0.000 0.964 0.000 0.036
#> SRR1201796 2 0.1118 0.8394 0.000 0.964 0.000 0.036
#> SRR1201795 2 0.1118 0.8394 0.000 0.964 0.000 0.036
#> SRR1201799 2 0.1118 0.8394 0.000 0.964 0.000 0.036
#> SRR1201794 2 0.1211 0.8369 0.000 0.960 0.000 0.040
#> SRR1201793 2 0.1118 0.8394 0.000 0.964 0.000 0.036
#> SRR1201792 2 0.1118 0.8394 0.000 0.964 0.000 0.036
#> SRR1201791 2 0.0921 0.8437 0.000 0.972 0.000 0.028
#> SRR1201807 2 0.1474 0.8292 0.000 0.948 0.000 0.052
#> SRR1201808 2 0.1557 0.8263 0.000 0.944 0.000 0.056
#> SRR1201803 2 0.1557 0.8263 0.000 0.944 0.000 0.056
#> SRR1201804 2 0.1557 0.8263 0.000 0.944 0.000 0.056
#> SRR1201805 2 0.1389 0.8322 0.000 0.952 0.000 0.048
#> SRR1201806 2 0.1474 0.8292 0.000 0.948 0.000 0.052
#> SRR1201801 2 0.1474 0.8292 0.000 0.948 0.000 0.052
#> SRR1201802 2 0.1474 0.8298 0.000 0.948 0.000 0.052
#> SRR1201800 2 0.1389 0.8322 0.000 0.952 0.000 0.048
#> SRR1201814 2 0.0707 0.8466 0.000 0.980 0.000 0.020
#> SRR1201816 2 0.0592 0.8480 0.000 0.984 0.000 0.016
#> SRR1201815 2 0.0707 0.8466 0.000 0.980 0.000 0.020
#> SRR1201819 2 0.0707 0.8466 0.000 0.980 0.000 0.020
#> SRR1201820 2 0.0707 0.8466 0.000 0.980 0.000 0.020
#> SRR1201813 2 0.0707 0.8468 0.000 0.980 0.000 0.020
#> SRR1201817 2 0.0707 0.8466 0.000 0.980 0.000 0.020
#> SRR1201818 2 0.0592 0.8480 0.000 0.984 0.000 0.016
#> SRR1201825 3 0.4933 0.5713 0.000 0.432 0.568 0.000
#> SRR1201827 2 0.1388 0.8447 0.000 0.960 0.028 0.012
#> SRR1201828 2 0.1388 0.8447 0.000 0.960 0.028 0.012
#> SRR1201826 2 0.2610 0.8175 0.000 0.900 0.088 0.012
#> SRR1201829 2 0.1388 0.8447 0.000 0.960 0.028 0.012
#> SRR1201830 2 0.1388 0.8447 0.000 0.960 0.028 0.012
#> SRR1201831 2 0.1388 0.8447 0.000 0.960 0.028 0.012
#> SRR1201832 2 0.1388 0.8447 0.000 0.960 0.028 0.012
#> SRR1201833 2 0.1388 0.8447 0.000 0.960 0.028 0.012
#> SRR1201865 2 0.3390 0.7748 0.000 0.852 0.132 0.016
#> SRR1201866 2 0.3390 0.7748 0.000 0.852 0.132 0.016
#> SRR1201867 2 0.3390 0.7748 0.000 0.852 0.132 0.016
#> SRR1201861 2 0.3390 0.7748 0.000 0.852 0.132 0.016
#> SRR1201862 2 0.3390 0.7748 0.000 0.852 0.132 0.016
#> SRR1201863 2 0.3335 0.7792 0.000 0.856 0.128 0.016
#> SRR1201859 2 0.4836 0.4190 0.000 0.672 0.320 0.008
#> SRR1201864 2 0.3390 0.7748 0.000 0.852 0.132 0.016
#> SRR1201860 2 0.3390 0.7748 0.000 0.852 0.132 0.016
#> SRR1201873 2 0.5217 0.1794 0.000 0.608 0.380 0.012
#> SRR1201871 3 0.4985 0.4658 0.000 0.468 0.532 0.000
#> SRR1201872 2 0.5174 0.2317 0.000 0.620 0.368 0.012
#> SRR1201980 2 0.3166 0.7901 0.000 0.868 0.116 0.016
#> SRR1201979 2 0.4284 0.6420 0.000 0.764 0.224 0.012
#> SRR1201982 2 0.2662 0.8168 0.000 0.900 0.084 0.016
#> SRR1201981 2 0.3498 0.7482 0.000 0.832 0.160 0.008
#> SRR1201998 2 0.1042 0.8479 0.000 0.972 0.020 0.008
#> SRR1201996 2 0.0895 0.8488 0.000 0.976 0.020 0.004
#> SRR1201997 2 0.0804 0.8495 0.000 0.980 0.012 0.008
#> SRR1202005 2 0.0817 0.8450 0.000 0.976 0.000 0.024
#> SRR1202006 2 0.1211 0.8370 0.000 0.960 0.000 0.040
#> SRR1202088 2 0.4804 0.5231 0.000 0.708 0.276 0.016
#> SRR1202087 2 0.5000 -0.3501 0.000 0.504 0.496 0.000
#> SRR1202093 2 0.1488 0.8433 0.000 0.956 0.032 0.012
#> SRR1202092 2 0.2987 0.8025 0.000 0.880 0.104 0.016
#> SRR1202288 2 0.2149 0.7997 0.000 0.912 0.000 0.088
#> SRR1202289 2 0.1637 0.8227 0.000 0.940 0.000 0.060
#> SRR1202299 2 0.1211 0.8370 0.000 0.960 0.000 0.040
#> SRR1202298 2 0.1118 0.8392 0.000 0.964 0.000 0.036
#> SRR1202303 2 0.3342 0.7980 0.000 0.868 0.100 0.032
#> SRR1202372 2 0.1022 0.8412 0.000 0.968 0.000 0.032
#> SRR1202371 2 0.1557 0.8296 0.000 0.944 0.000 0.056
#> SRR1202563 2 0.2593 0.8199 0.000 0.904 0.016 0.080
#> SRR1202565 2 0.0336 0.8504 0.000 0.992 0.000 0.008
#> SRR1202564 2 0.0336 0.8504 0.000 0.992 0.000 0.008
#> SRR1202649 2 0.4452 0.7122 0.000 0.796 0.156 0.048
#> SRR1202650 2 0.1004 0.8484 0.000 0.972 0.024 0.004
#> SRR1202651 2 0.0817 0.8450 0.000 0.976 0.000 0.024
#> SRR1202843 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1202845 2 0.0188 0.8514 0.000 0.996 0.000 0.004
#> SRR1202847 2 0.0336 0.8503 0.000 0.992 0.000 0.008
#> SRR1202846 2 0.0188 0.8508 0.000 0.996 0.000 0.004
#> SRR1202945 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203009 1 0.5223 0.6509 0.736 0.008 0.040 0.216
#> SRR1203008 1 0.1843 0.9416 0.948 0.008 0.016 0.028
#> SRR1203010 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203132 2 0.2987 0.8009 0.000 0.880 0.104 0.016
#> SRR1203131 2 0.4253 0.6693 0.000 0.776 0.208 0.016
#> SRR1203133 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203827 3 0.5582 -0.6219 0.000 0.024 0.576 0.400
#> SRR1203828 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203842 4 0.5395 0.0000 0.000 0.092 0.172 0.736
#> SRR1203843 1 0.0000 0.9955 1.000 0.000 0.000 0.000
#> SRR1203845 2 0.1637 0.8225 0.000 0.940 0.000 0.060
#> SRR1203844 2 0.1637 0.8225 0.000 0.940 0.000 0.060
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.0880 0.8228 0.000 0.968 0.000 0.032 0.000
#> SRR1201590 2 0.0324 0.8349 0.000 0.992 0.004 0.004 0.000
#> SRR1201593 2 0.1121 0.8157 0.000 0.956 0.000 0.044 0.000
#> SRR1201592 2 0.1043 0.8184 0.000 0.960 0.000 0.040 0.000
#> SRR1201617 2 0.1121 0.8157 0.000 0.956 0.000 0.044 0.000
#> SRR1201616 2 0.1121 0.8157 0.000 0.956 0.000 0.044 0.000
#> SRR1201619 2 0.1892 0.8130 0.000 0.916 0.080 0.000 0.004
#> SRR1201618 2 0.3203 0.7341 0.000 0.820 0.168 0.012 0.000
#> SRR1201620 2 0.1430 0.8075 0.000 0.944 0.004 0.052 0.000
#> SRR1201621 2 0.1282 0.8124 0.000 0.952 0.004 0.044 0.000
#> SRR1201623 2 0.4473 0.0231 0.000 0.580 0.412 0.000 0.008
#> SRR1201622 3 0.4517 0.6270 0.000 0.388 0.600 0.000 0.012
#> SRR1201624 3 0.3498 -0.1702 0.000 0.044 0.848 0.016 0.092
#> SRR1201625 3 0.3535 0.5328 0.000 0.164 0.808 0.000 0.028
#> SRR1201626 5 0.6067 0.0000 0.000 0.028 0.304 0.080 0.588
#> SRR1201627 3 0.5446 0.6288 0.000 0.272 0.628 0.000 0.100
#> SRR1201628 2 0.3884 0.5251 0.000 0.708 0.288 0.004 0.000
#> SRR1201629 2 0.3274 0.6697 0.000 0.780 0.220 0.000 0.000
#> SRR1201630 2 0.0794 0.8325 0.000 0.972 0.028 0.000 0.000
#> SRR1201631 2 0.0404 0.8348 0.000 0.988 0.012 0.000 0.000
#> SRR1201641 2 0.0963 0.8306 0.000 0.964 0.036 0.000 0.000
#> SRR1201640 2 0.1121 0.8285 0.000 0.956 0.044 0.000 0.000
#> SRR1201643 2 0.2629 0.7745 0.000 0.860 0.136 0.004 0.000
#> SRR1201644 2 0.2389 0.7896 0.000 0.880 0.116 0.000 0.004
#> SRR1201661 2 0.0693 0.8343 0.000 0.980 0.008 0.012 0.000
#> SRR1201662 2 0.0955 0.8266 0.000 0.968 0.004 0.028 0.000
#> SRR1201663 3 0.3527 0.6038 0.000 0.192 0.792 0.000 0.016
#> SRR1201664 3 0.3671 0.6630 0.000 0.236 0.756 0.000 0.008
#> SRR1201665 2 0.0798 0.8346 0.000 0.976 0.008 0.016 0.000
#> SRR1201666 2 0.0290 0.8351 0.000 0.992 0.008 0.000 0.000
#> SRR1201667 2 0.0290 0.8351 0.000 0.992 0.008 0.000 0.000
#> SRR1201668 3 0.3730 0.5327 0.000 0.168 0.800 0.004 0.028
#> SRR1201670 3 0.3863 0.6689 0.000 0.248 0.740 0.000 0.012
#> SRR1201669 3 0.3863 0.6689 0.000 0.248 0.740 0.000 0.012
#> SRR1201673 2 0.2674 0.7698 0.000 0.856 0.140 0.000 0.004
#> SRR1201672 2 0.2674 0.7698 0.000 0.856 0.140 0.000 0.004
#> SRR1201671 2 0.3461 0.6624 0.000 0.772 0.224 0.004 0.000
#> SRR1201677 2 0.2674 0.7698 0.000 0.856 0.140 0.000 0.004
#> SRR1201676 2 0.2674 0.7698 0.000 0.856 0.140 0.000 0.004
#> SRR1201675 2 0.2674 0.7698 0.000 0.856 0.140 0.000 0.004
#> SRR1201674 2 0.2674 0.7698 0.000 0.856 0.140 0.000 0.004
#> SRR1201678 2 0.2674 0.7698 0.000 0.856 0.140 0.000 0.004
#> SRR1201682 2 0.0162 0.8347 0.000 0.996 0.004 0.000 0.000
#> SRR1201683 2 0.0162 0.8347 0.000 0.996 0.004 0.000 0.000
#> SRR1201680 2 0.0162 0.8347 0.000 0.996 0.004 0.000 0.000
#> SRR1201681 2 0.0162 0.8347 0.000 0.996 0.004 0.000 0.000
#> SRR1201679 2 0.0510 0.8343 0.000 0.984 0.016 0.000 0.000
#> SRR1201686 3 0.3530 0.6273 0.000 0.204 0.784 0.000 0.012
#> SRR1201687 3 0.3530 0.6273 0.000 0.204 0.784 0.000 0.012
#> SRR1201688 3 0.3530 0.6273 0.000 0.204 0.784 0.000 0.012
#> SRR1201689 3 0.3530 0.6273 0.000 0.204 0.784 0.000 0.012
#> SRR1201685 3 0.3635 0.3164 0.000 0.112 0.828 0.004 0.056
#> SRR1201692 2 0.2648 0.7599 0.000 0.848 0.152 0.000 0.000
#> SRR1201691 2 0.2690 0.7564 0.000 0.844 0.156 0.000 0.000
#> SRR1201690 2 0.3662 0.6089 0.000 0.744 0.252 0.004 0.000
#> SRR1201696 2 0.2648 0.7599 0.000 0.848 0.152 0.000 0.000
#> SRR1201695 2 0.2690 0.7564 0.000 0.844 0.156 0.000 0.000
#> SRR1201694 2 0.2648 0.7599 0.000 0.848 0.152 0.000 0.000
#> SRR1201693 2 0.2648 0.7599 0.000 0.848 0.152 0.000 0.000
#> SRR1201697 2 0.2648 0.7599 0.000 0.848 0.152 0.000 0.000
#> SRR1201698 2 0.2424 0.7789 0.000 0.868 0.132 0.000 0.000
#> SRR1201700 2 0.4434 -0.2204 0.000 0.536 0.460 0.000 0.004
#> SRR1201708 2 0.4211 0.2919 0.000 0.636 0.360 0.000 0.004
#> SRR1201707 2 0.4251 0.2436 0.000 0.624 0.372 0.000 0.004
#> SRR1201706 2 0.4238 0.2604 0.000 0.628 0.368 0.000 0.004
#> SRR1201702 2 0.4225 0.2769 0.000 0.632 0.364 0.000 0.004
#> SRR1201705 2 0.4182 0.3235 0.000 0.644 0.352 0.000 0.004
#> SRR1201701 2 0.4251 0.2436 0.000 0.624 0.372 0.000 0.004
#> SRR1201704 2 0.4225 0.2770 0.000 0.632 0.364 0.000 0.004
#> SRR1201703 2 0.4251 0.2436 0.000 0.624 0.372 0.000 0.004
#> SRR1201716 3 0.4557 0.4456 0.000 0.476 0.516 0.000 0.008
#> SRR1201715 3 0.4561 0.4079 0.000 0.488 0.504 0.000 0.008
#> SRR1201717 3 0.4559 0.4342 0.000 0.480 0.512 0.000 0.008
#> SRR1201712 3 0.4559 0.4342 0.000 0.480 0.512 0.000 0.008
#> SRR1201709 3 0.4354 0.6551 0.000 0.368 0.624 0.000 0.008
#> SRR1201711 3 0.4557 0.4456 0.000 0.476 0.516 0.000 0.008
#> SRR1201714 3 0.4561 0.4079 0.000 0.488 0.504 0.000 0.008
#> SRR1201713 3 0.4561 0.4079 0.000 0.488 0.504 0.000 0.008
#> SRR1201710 3 0.4561 0.4079 0.000 0.488 0.504 0.000 0.008
#> SRR1201719 2 0.0771 0.8299 0.000 0.976 0.004 0.020 0.000
#> SRR1201718 2 0.0609 0.8340 0.000 0.980 0.020 0.000 0.000
#> SRR1201721 2 0.3336 0.6570 0.000 0.772 0.228 0.000 0.000
#> SRR1201720 2 0.4181 0.4383 0.000 0.676 0.316 0.004 0.004
#> SRR1201723 3 0.3671 0.6630 0.000 0.236 0.756 0.000 0.008
#> SRR1201722 3 0.3639 0.5743 0.000 0.184 0.792 0.000 0.024
#> SRR1201725 2 0.0404 0.8348 0.000 0.988 0.012 0.000 0.000
#> SRR1201724 2 0.0794 0.8324 0.000 0.972 0.028 0.000 0.000
#> SRR1201726 3 0.4252 0.6879 0.000 0.340 0.652 0.000 0.008
#> SRR1201727 2 0.4434 -0.2192 0.000 0.536 0.460 0.000 0.004
#> SRR1201731 2 0.2929 0.7285 0.000 0.820 0.180 0.000 0.000
#> SRR1201730 2 0.3366 0.6802 0.000 0.784 0.212 0.004 0.000
#> SRR1201734 2 0.0880 0.8228 0.000 0.968 0.000 0.032 0.000
#> SRR1201733 2 0.1270 0.8135 0.000 0.948 0.000 0.052 0.000
#> SRR1201736 2 0.2351 0.8060 0.000 0.896 0.088 0.016 0.000
#> SRR1201737 2 0.1928 0.8164 0.000 0.920 0.072 0.004 0.004
#> SRR1201739 2 0.0404 0.8311 0.000 0.988 0.000 0.012 0.000
#> SRR1201738 2 0.0693 0.8359 0.000 0.980 0.012 0.008 0.000
#> SRR1201742 2 0.2612 0.7829 0.000 0.868 0.124 0.008 0.000
#> SRR1201743 2 0.2124 0.8024 0.000 0.900 0.096 0.000 0.004
#> SRR1201745 2 0.1430 0.8051 0.000 0.944 0.004 0.052 0.000
#> SRR1201744 2 0.2583 0.7244 0.000 0.864 0.004 0.132 0.000
#> SRR1201749 2 0.1082 0.8338 0.000 0.964 0.028 0.008 0.000
#> SRR1201750 2 0.0609 0.8339 0.000 0.980 0.020 0.000 0.000
#> SRR1201752 2 0.3210 0.6828 0.000 0.788 0.212 0.000 0.000
#> SRR1201751 2 0.3766 0.5743 0.000 0.728 0.268 0.004 0.000
#> SRR1201754 2 0.1205 0.8204 0.000 0.956 0.004 0.040 0.000
#> SRR1201753 2 0.1357 0.8173 0.000 0.948 0.004 0.048 0.000
#> SRR1201758 3 0.3145 0.0344 0.000 0.060 0.868 0.008 0.064
#> SRR1201759 3 0.3276 0.4118 0.000 0.132 0.836 0.000 0.032
#> SRR1201760 2 0.3837 0.4788 0.000 0.692 0.308 0.000 0.000
#> SRR1201761 2 0.3636 0.5714 0.000 0.728 0.272 0.000 0.000
#> SRR1201763 3 0.4210 0.6430 0.000 0.224 0.740 0.000 0.036
#> SRR1201762 3 0.5863 -0.7243 0.000 0.016 0.580 0.076 0.328
#> SRR1201764 2 0.4704 0.6192 0.000 0.744 0.192 0.032 0.032
#> SRR1201766 2 0.0290 0.8353 0.000 0.992 0.008 0.000 0.000
#> SRR1201768 2 0.0324 0.8350 0.000 0.992 0.004 0.000 0.004
#> SRR1201769 2 0.0324 0.8350 0.000 0.992 0.004 0.000 0.004
#> SRR1201767 2 0.0324 0.8350 0.000 0.992 0.004 0.000 0.004
#> SRR1201770 2 0.0324 0.8350 0.000 0.992 0.004 0.000 0.004
#> SRR1201771 2 0.0162 0.8345 0.000 0.996 0.000 0.000 0.004
#> SRR1201772 2 0.0162 0.8345 0.000 0.996 0.000 0.000 0.004
#> SRR1201773 2 0.0324 0.8350 0.000 0.992 0.004 0.000 0.004
#> SRR1201774 2 0.0324 0.8350 0.000 0.992 0.004 0.000 0.004
#> SRR1201786 2 0.0324 0.8339 0.000 0.992 0.000 0.004 0.004
#> SRR1201784 2 0.0162 0.8345 0.000 0.996 0.000 0.000 0.004
#> SRR1201785 2 0.0162 0.8345 0.000 0.996 0.000 0.000 0.004
#> SRR1201778 2 0.0671 0.8319 0.000 0.980 0.004 0.016 0.000
#> SRR1201779 2 0.0162 0.8345 0.000 0.996 0.000 0.000 0.004
#> SRR1201781 2 0.0162 0.8345 0.000 0.996 0.000 0.000 0.004
#> SRR1201780 2 0.0162 0.8345 0.000 0.996 0.000 0.000 0.004
#> SRR1201783 2 0.0324 0.8339 0.000 0.992 0.000 0.004 0.004
#> SRR1201782 2 0.0324 0.8339 0.000 0.992 0.000 0.004 0.004
#> SRR1201798 2 0.1043 0.8184 0.000 0.960 0.000 0.040 0.000
#> SRR1201797 2 0.1043 0.8184 0.000 0.960 0.000 0.040 0.000
#> SRR1201796 2 0.1043 0.8184 0.000 0.960 0.000 0.040 0.000
#> SRR1201795 2 0.1043 0.8184 0.000 0.960 0.000 0.040 0.000
#> SRR1201799 2 0.1043 0.8184 0.000 0.960 0.000 0.040 0.000
#> SRR1201794 2 0.1043 0.8184 0.000 0.960 0.000 0.040 0.000
#> SRR1201793 2 0.1043 0.8184 0.000 0.960 0.000 0.040 0.000
#> SRR1201792 2 0.1043 0.8184 0.000 0.960 0.000 0.040 0.000
#> SRR1201791 2 0.0794 0.8248 0.000 0.972 0.000 0.028 0.000
#> SRR1201807 2 0.1121 0.8157 0.000 0.956 0.000 0.044 0.000
#> SRR1201808 2 0.1121 0.8157 0.000 0.956 0.000 0.044 0.000
#> SRR1201803 2 0.1121 0.8157 0.000 0.956 0.000 0.044 0.000
#> SRR1201804 2 0.1121 0.8157 0.000 0.956 0.000 0.044 0.000
#> SRR1201805 2 0.1121 0.8157 0.000 0.956 0.000 0.044 0.000
#> SRR1201806 2 0.1121 0.8157 0.000 0.956 0.000 0.044 0.000
#> SRR1201801 2 0.1121 0.8157 0.000 0.956 0.000 0.044 0.000
#> SRR1201802 2 0.1121 0.8157 0.000 0.956 0.000 0.044 0.000
#> SRR1201800 2 0.1043 0.8184 0.000 0.960 0.000 0.040 0.000
#> SRR1201814 2 0.0609 0.8284 0.000 0.980 0.000 0.020 0.000
#> SRR1201816 2 0.0609 0.8284 0.000 0.980 0.000 0.020 0.000
#> SRR1201815 2 0.0609 0.8284 0.000 0.980 0.000 0.020 0.000
#> SRR1201819 2 0.0609 0.8284 0.000 0.980 0.000 0.020 0.000
#> SRR1201820 2 0.0609 0.8284 0.000 0.980 0.000 0.020 0.000
#> SRR1201813 2 0.0609 0.8284 0.000 0.980 0.000 0.020 0.000
#> SRR1201817 2 0.0609 0.8284 0.000 0.980 0.000 0.020 0.000
#> SRR1201818 2 0.0609 0.8284 0.000 0.980 0.000 0.020 0.000
#> SRR1201825 3 0.4473 0.6866 0.000 0.324 0.656 0.000 0.020
#> SRR1201827 2 0.1831 0.8149 0.000 0.920 0.076 0.000 0.004
#> SRR1201828 2 0.1768 0.8170 0.000 0.924 0.072 0.000 0.004
#> SRR1201826 2 0.2629 0.7750 0.000 0.860 0.136 0.004 0.000
#> SRR1201829 2 0.1768 0.8170 0.000 0.924 0.072 0.000 0.004
#> SRR1201830 2 0.1768 0.8170 0.000 0.924 0.072 0.000 0.004
#> SRR1201831 2 0.1768 0.8170 0.000 0.924 0.072 0.000 0.004
#> SRR1201832 2 0.1768 0.8170 0.000 0.924 0.072 0.000 0.004
#> SRR1201833 2 0.1768 0.8170 0.000 0.924 0.072 0.000 0.004
#> SRR1201865 2 0.3689 0.5997 0.000 0.740 0.256 0.004 0.000
#> SRR1201866 2 0.3689 0.5997 0.000 0.740 0.256 0.004 0.000
#> SRR1201867 2 0.3689 0.5997 0.000 0.740 0.256 0.004 0.000
#> SRR1201861 2 0.3689 0.5997 0.000 0.740 0.256 0.004 0.000
#> SRR1201862 2 0.3689 0.5997 0.000 0.740 0.256 0.004 0.000
#> SRR1201863 2 0.3662 0.6076 0.000 0.744 0.252 0.004 0.000
#> SRR1201859 2 0.4637 -0.2251 0.000 0.536 0.452 0.000 0.012
#> SRR1201864 2 0.3689 0.5997 0.000 0.740 0.256 0.004 0.000
#> SRR1201860 2 0.3689 0.5997 0.000 0.740 0.256 0.004 0.000
#> SRR1201873 2 0.4560 -0.3461 0.000 0.508 0.484 0.000 0.008
#> SRR1201871 3 0.4444 0.6628 0.000 0.364 0.624 0.000 0.012
#> SRR1201872 2 0.4552 -0.2746 0.000 0.524 0.468 0.000 0.008
#> SRR1201980 2 0.3010 0.7344 0.000 0.824 0.172 0.004 0.000
#> SRR1201979 2 0.3741 0.5815 0.000 0.732 0.264 0.000 0.004
#> SRR1201982 2 0.2329 0.7857 0.000 0.876 0.124 0.000 0.000
#> SRR1201981 2 0.3305 0.6655 0.000 0.776 0.224 0.000 0.000
#> SRR1201998 2 0.1768 0.8173 0.000 0.924 0.072 0.000 0.004
#> SRR1201996 2 0.1478 0.8216 0.000 0.936 0.064 0.000 0.000
#> SRR1201997 2 0.1121 0.8285 0.000 0.956 0.044 0.000 0.000
#> SRR1202005 2 0.1124 0.8229 0.000 0.960 0.004 0.036 0.000
#> SRR1202006 2 0.1205 0.8204 0.000 0.956 0.004 0.040 0.000
#> SRR1202088 2 0.4181 0.4322 0.000 0.676 0.316 0.004 0.004
#> SRR1202087 3 0.4802 0.4346 0.000 0.480 0.504 0.004 0.012
#> SRR1202093 2 0.1928 0.8164 0.000 0.920 0.072 0.004 0.004
#> SRR1202092 2 0.2753 0.7724 0.000 0.856 0.136 0.008 0.000
#> SRR1202288 2 0.1638 0.7995 0.000 0.932 0.004 0.064 0.000
#> SRR1202289 2 0.1121 0.8157 0.000 0.956 0.000 0.044 0.000
#> SRR1202299 2 0.1043 0.8184 0.000 0.960 0.000 0.040 0.000
#> SRR1202298 2 0.1043 0.8184 0.000 0.960 0.000 0.040 0.000
#> SRR1202303 2 0.2304 0.8016 0.000 0.892 0.100 0.000 0.008
#> SRR1202372 2 0.0963 0.8206 0.000 0.964 0.000 0.036 0.000
#> SRR1202371 2 0.1197 0.8151 0.000 0.952 0.000 0.048 0.000
#> SRR1202563 2 0.2353 0.8161 0.000 0.908 0.028 0.060 0.004
#> SRR1202565 2 0.0290 0.8351 0.000 0.992 0.008 0.000 0.000
#> SRR1202564 2 0.0290 0.8351 0.000 0.992 0.008 0.000 0.000
#> SRR1202649 2 0.3716 0.7319 0.000 0.812 0.152 0.024 0.012
#> SRR1202650 2 0.1341 0.8243 0.000 0.944 0.056 0.000 0.000
#> SRR1202651 2 0.1041 0.8248 0.000 0.964 0.004 0.032 0.000
#> SRR1202843 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1202845 2 0.0510 0.8347 0.000 0.984 0.016 0.000 0.000
#> SRR1202847 2 0.0579 0.8349 0.000 0.984 0.008 0.008 0.000
#> SRR1202846 2 0.0451 0.8353 0.000 0.988 0.008 0.004 0.000
#> SRR1202945 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.6934 0.2135 0.548 0.012 0.020 0.200 0.220
#> SRR1203008 1 0.1805 0.9332 0.944 0.012 0.020 0.008 0.016
#> SRR1203010 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203132 2 0.2732 0.7523 0.000 0.840 0.160 0.000 0.000
#> SRR1203131 2 0.3937 0.5969 0.000 0.736 0.252 0.008 0.004
#> SRR1203133 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.1549 0.9375 0.944 0.000 0.000 0.040 0.016
#> SRR1203800 1 0.0324 0.9847 0.992 0.000 0.000 0.004 0.004
#> SRR1203801 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203827 4 0.7215 -0.2442 0.000 0.016 0.300 0.344 0.340
#> SRR1203828 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203842 4 0.2772 0.1682 0.000 0.052 0.044 0.892 0.012
#> SRR1203843 1 0.0000 0.9919 1.000 0.000 0.000 0.000 0.000
#> SRR1203845 2 0.1282 0.8179 0.000 0.952 0.004 0.044 0.000
#> SRR1203844 2 0.1357 0.8160 0.000 0.948 0.004 0.048 0.000
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 3 0.1204 0.8245 0.000 0.000 0.944 0.000 0.000 NA
#> SRR1201590 3 0.1003 0.8361 0.000 0.000 0.964 0.004 0.004 NA
#> SRR1201593 3 0.1387 0.8179 0.000 0.000 0.932 0.000 0.000 NA
#> SRR1201592 3 0.1471 0.8231 0.000 0.000 0.932 0.004 0.000 NA
#> SRR1201617 3 0.1444 0.8182 0.000 0.000 0.928 0.000 0.000 NA
#> SRR1201616 3 0.1471 0.8231 0.000 0.000 0.932 0.004 0.000 NA
#> SRR1201619 3 0.1890 0.8195 0.000 0.000 0.916 0.000 0.060 NA
#> SRR1201618 3 0.2544 0.7950 0.000 0.000 0.864 0.004 0.120 NA
#> SRR1201620 3 0.1674 0.8195 0.000 0.004 0.924 0.004 0.000 NA
#> SRR1201621 3 0.1327 0.8198 0.000 0.000 0.936 0.000 0.000 NA
#> SRR1201623 3 0.4242 -0.1868 0.000 0.000 0.536 0.000 0.448 NA
#> SRR1201622 5 0.4105 0.6708 0.000 0.000 0.348 0.000 0.632 NA
#> SRR1201624 5 0.3828 -0.1492 0.000 0.028 0.016 0.044 0.820 NA
#> SRR1201625 5 0.3347 0.5541 0.000 0.004 0.152 0.004 0.812 NA
#> SRR1201626 4 0.2039 0.0000 0.000 0.020 0.000 0.904 0.076 NA
#> SRR1201627 5 0.5665 0.6406 0.000 0.000 0.304 0.088 0.572 NA
#> SRR1201628 3 0.3859 0.4995 0.000 0.000 0.692 0.000 0.288 NA
#> SRR1201629 3 0.3588 0.6887 0.000 0.000 0.776 0.000 0.180 NA
#> SRR1201630 3 0.1464 0.8367 0.000 0.000 0.944 0.004 0.016 NA
#> SRR1201631 3 0.1370 0.8364 0.000 0.000 0.948 0.004 0.012 NA
#> SRR1201641 3 0.1341 0.8322 0.000 0.000 0.948 0.000 0.024 NA
#> SRR1201640 3 0.1719 0.8333 0.000 0.000 0.932 0.004 0.032 NA
#> SRR1201643 3 0.2972 0.7660 0.000 0.000 0.836 0.000 0.128 NA
#> SRR1201644 3 0.2954 0.7755 0.000 0.000 0.844 0.000 0.108 NA
#> SRR1201661 3 0.1410 0.8352 0.000 0.000 0.944 0.004 0.008 NA
#> SRR1201662 3 0.1493 0.8328 0.000 0.000 0.936 0.004 0.004 NA
#> SRR1201663 5 0.3316 0.5494 0.000 0.008 0.152 0.000 0.812 NA
#> SRR1201664 5 0.3231 0.6358 0.000 0.000 0.200 0.000 0.784 NA
#> SRR1201665 3 0.1382 0.8346 0.000 0.000 0.948 0.008 0.008 NA
#> SRR1201666 3 0.0653 0.8384 0.000 0.000 0.980 0.004 0.004 NA
#> SRR1201667 3 0.0653 0.8384 0.000 0.000 0.980 0.004 0.004 NA
#> SRR1201668 5 0.3546 0.4960 0.000 0.012 0.136 0.004 0.812 NA
#> SRR1201670 5 0.3487 0.6490 0.000 0.000 0.224 0.000 0.756 NA
#> SRR1201669 5 0.3487 0.6490 0.000 0.000 0.224 0.000 0.756 NA
#> SRR1201673 3 0.2680 0.7806 0.000 0.000 0.860 0.000 0.108 NA
#> SRR1201672 3 0.2633 0.7840 0.000 0.000 0.864 0.000 0.104 NA
#> SRR1201671 3 0.2980 0.7386 0.000 0.000 0.808 0.000 0.180 NA
#> SRR1201677 3 0.2706 0.7816 0.000 0.000 0.860 0.000 0.104 NA
#> SRR1201676 3 0.2752 0.7780 0.000 0.000 0.856 0.000 0.108 NA
#> SRR1201675 3 0.2586 0.7874 0.000 0.000 0.868 0.000 0.100 NA
#> SRR1201674 3 0.2706 0.7816 0.000 0.000 0.860 0.000 0.104 NA
#> SRR1201678 3 0.2680 0.7806 0.000 0.000 0.860 0.000 0.108 NA
#> SRR1201682 3 0.0291 0.8384 0.000 0.000 0.992 0.004 0.000 NA
#> SRR1201683 3 0.0291 0.8384 0.000 0.000 0.992 0.004 0.000 NA
#> SRR1201680 3 0.0291 0.8384 0.000 0.000 0.992 0.004 0.000 NA
#> SRR1201681 3 0.0291 0.8384 0.000 0.000 0.992 0.004 0.000 NA
#> SRR1201679 3 0.1138 0.8384 0.000 0.000 0.960 0.004 0.012 NA
#> SRR1201686 5 0.3229 0.5952 0.000 0.004 0.172 0.000 0.804 NA
#> SRR1201687 5 0.3263 0.6014 0.000 0.004 0.176 0.000 0.800 NA
#> SRR1201688 5 0.3229 0.5952 0.000 0.004 0.172 0.000 0.804 NA
#> SRR1201689 5 0.3263 0.6014 0.000 0.004 0.176 0.000 0.800 NA
#> SRR1201685 5 0.3443 0.3594 0.000 0.016 0.096 0.008 0.836 NA
#> SRR1201692 3 0.3268 0.7366 0.000 0.000 0.812 0.000 0.144 NA
#> SRR1201691 3 0.3307 0.7317 0.000 0.000 0.808 0.000 0.148 NA
#> SRR1201690 3 0.3695 0.6131 0.000 0.000 0.732 0.000 0.244 NA
#> SRR1201696 3 0.3268 0.7366 0.000 0.000 0.812 0.000 0.144 NA
#> SRR1201695 3 0.3307 0.7317 0.000 0.000 0.808 0.000 0.148 NA
#> SRR1201694 3 0.3190 0.7450 0.000 0.000 0.820 0.000 0.136 NA
#> SRR1201693 3 0.3268 0.7366 0.000 0.000 0.812 0.000 0.144 NA
#> SRR1201697 3 0.3268 0.7366 0.000 0.000 0.812 0.000 0.144 NA
#> SRR1201698 3 0.3150 0.7589 0.000 0.000 0.828 0.000 0.120 NA
#> SRR1201700 3 0.4250 -0.2120 0.000 0.000 0.528 0.000 0.456 NA
#> SRR1201708 3 0.4543 0.2203 0.000 0.000 0.604 0.004 0.356 NA
#> SRR1201707 3 0.4531 0.2373 0.000 0.000 0.608 0.004 0.352 NA
#> SRR1201706 3 0.4554 0.2025 0.000 0.000 0.600 0.004 0.360 NA
#> SRR1201702 3 0.4543 0.2204 0.000 0.000 0.604 0.004 0.356 NA
#> SRR1201705 3 0.4531 0.2373 0.000 0.000 0.608 0.004 0.352 NA
#> SRR1201701 3 0.4566 0.1843 0.000 0.000 0.596 0.004 0.364 NA
#> SRR1201704 3 0.4543 0.2203 0.000 0.000 0.604 0.004 0.356 NA
#> SRR1201703 3 0.4566 0.1843 0.000 0.000 0.596 0.004 0.364 NA
#> SRR1201716 5 0.4072 0.5123 0.000 0.000 0.448 0.000 0.544 NA
#> SRR1201715 5 0.4076 0.5018 0.000 0.000 0.452 0.000 0.540 NA
#> SRR1201717 5 0.4072 0.5123 0.000 0.000 0.448 0.000 0.544 NA
#> SRR1201712 5 0.4072 0.5123 0.000 0.000 0.448 0.000 0.544 NA
#> SRR1201709 5 0.3833 0.6757 0.000 0.000 0.344 0.000 0.648 NA
#> SRR1201711 5 0.4067 0.5205 0.000 0.000 0.444 0.000 0.548 NA
#> SRR1201714 5 0.4169 0.4889 0.000 0.000 0.456 0.000 0.532 NA
#> SRR1201713 5 0.4169 0.4889 0.000 0.000 0.456 0.000 0.532 NA
#> SRR1201710 5 0.4080 0.4909 0.000 0.000 0.456 0.000 0.536 NA
#> SRR1201719 3 0.1296 0.8363 0.000 0.000 0.948 0.004 0.004 NA
#> SRR1201718 3 0.1340 0.8370 0.000 0.000 0.948 0.004 0.008 NA
#> SRR1201721 3 0.3652 0.6840 0.000 0.000 0.768 0.000 0.188 NA
#> SRR1201720 3 0.4170 0.4263 0.000 0.000 0.660 0.000 0.308 NA
#> SRR1201723 5 0.3261 0.6397 0.000 0.000 0.204 0.000 0.780 NA
#> SRR1201722 5 0.3603 0.5386 0.000 0.008 0.148 0.008 0.804 NA
#> SRR1201725 3 0.1462 0.8357 0.000 0.000 0.936 0.000 0.008 NA
#> SRR1201724 3 0.1693 0.8358 0.000 0.000 0.932 0.004 0.020 NA
#> SRR1201726 5 0.4062 0.6814 0.000 0.000 0.316 0.000 0.660 NA
#> SRR1201727 3 0.4584 -0.2587 0.000 0.000 0.512 0.000 0.452 NA
#> SRR1201731 3 0.3516 0.7163 0.000 0.000 0.788 0.000 0.164 NA
#> SRR1201730 3 0.3456 0.7153 0.000 0.000 0.788 0.000 0.172 NA
#> SRR1201734 3 0.1349 0.8249 0.000 0.000 0.940 0.004 0.000 NA
#> SRR1201733 3 0.1555 0.8270 0.000 0.000 0.932 0.004 0.004 NA
#> SRR1201736 3 0.2152 0.8288 0.000 0.000 0.904 0.004 0.068 NA
#> SRR1201737 3 0.1657 0.8265 0.000 0.000 0.928 0.000 0.056 NA
#> SRR1201739 3 0.1082 0.8311 0.000 0.000 0.956 0.004 0.000 NA
#> SRR1201738 3 0.1453 0.8343 0.000 0.000 0.944 0.008 0.008 NA
#> SRR1201742 3 0.2213 0.8121 0.000 0.000 0.888 0.004 0.100 NA
#> SRR1201743 3 0.2176 0.8088 0.000 0.000 0.896 0.000 0.080 NA
#> SRR1201745 3 0.1700 0.8101 0.000 0.004 0.916 0.000 0.000 NA
#> SRR1201744 3 0.3021 0.7622 0.000 0.056 0.860 0.004 0.008 NA
#> SRR1201749 3 0.1261 0.8395 0.000 0.000 0.952 0.000 0.024 NA
#> SRR1201750 3 0.0820 0.8372 0.000 0.000 0.972 0.000 0.016 NA
#> SRR1201752 3 0.3388 0.7086 0.000 0.000 0.792 0.000 0.172 NA
#> SRR1201751 3 0.3743 0.5972 0.000 0.000 0.724 0.000 0.252 NA
#> SRR1201754 3 0.1588 0.8240 0.000 0.000 0.924 0.004 0.000 NA
#> SRR1201753 3 0.1615 0.8259 0.000 0.000 0.928 0.004 0.004 NA
#> SRR1201758 5 0.2854 -0.0459 0.000 0.024 0.020 0.004 0.872 NA
#> SRR1201759 5 0.2933 0.3916 0.000 0.008 0.096 0.004 0.860 NA
#> SRR1201760 3 0.4011 0.4639 0.000 0.000 0.672 0.000 0.304 NA
#> SRR1201761 3 0.4023 0.5790 0.000 0.000 0.720 0.004 0.240 NA
#> SRR1201763 5 0.3973 0.6418 0.000 0.004 0.216 0.008 0.744 NA
#> SRR1201762 5 0.7183 -0.7432 0.000 0.068 0.012 0.324 0.400 NA
#> SRR1201764 3 0.3600 0.7735 0.000 0.004 0.820 0.016 0.108 NA
#> SRR1201766 3 0.1232 0.8384 0.000 0.000 0.956 0.004 0.016 NA
#> SRR1201768 3 0.0909 0.8372 0.000 0.000 0.968 0.000 0.012 NA
#> SRR1201769 3 0.0909 0.8372 0.000 0.000 0.968 0.000 0.012 NA
#> SRR1201767 3 0.0909 0.8372 0.000 0.000 0.968 0.000 0.012 NA
#> SRR1201770 3 0.0909 0.8372 0.000 0.000 0.968 0.000 0.012 NA
#> SRR1201771 3 0.0993 0.8375 0.000 0.000 0.964 0.000 0.012 NA
#> SRR1201772 3 0.0909 0.8372 0.000 0.000 0.968 0.000 0.012 NA
#> SRR1201773 3 0.0909 0.8372 0.000 0.000 0.968 0.000 0.012 NA
#> SRR1201774 3 0.0909 0.8372 0.000 0.000 0.968 0.000 0.012 NA
#> SRR1201786 3 0.0632 0.8360 0.000 0.000 0.976 0.000 0.000 NA
#> SRR1201784 3 0.0632 0.8360 0.000 0.000 0.976 0.000 0.000 NA
#> SRR1201785 3 0.0632 0.8360 0.000 0.000 0.976 0.000 0.000 NA
#> SRR1201778 3 0.1003 0.8342 0.000 0.000 0.964 0.004 0.004 NA
#> SRR1201779 3 0.0632 0.8360 0.000 0.000 0.976 0.000 0.000 NA
#> SRR1201781 3 0.0632 0.8360 0.000 0.000 0.976 0.000 0.000 NA
#> SRR1201780 3 0.0632 0.8360 0.000 0.000 0.976 0.000 0.000 NA
#> SRR1201783 3 0.0632 0.8360 0.000 0.000 0.976 0.000 0.000 NA
#> SRR1201782 3 0.0632 0.8360 0.000 0.000 0.976 0.000 0.000 NA
#> SRR1201798 3 0.1267 0.8227 0.000 0.000 0.940 0.000 0.000 NA
#> SRR1201797 3 0.1267 0.8227 0.000 0.000 0.940 0.000 0.000 NA
#> SRR1201796 3 0.1267 0.8227 0.000 0.000 0.940 0.000 0.000 NA
#> SRR1201795 3 0.1267 0.8227 0.000 0.000 0.940 0.000 0.000 NA
#> SRR1201799 3 0.1267 0.8227 0.000 0.000 0.940 0.000 0.000 NA
#> SRR1201794 3 0.1267 0.8227 0.000 0.000 0.940 0.000 0.000 NA
#> SRR1201793 3 0.1267 0.8227 0.000 0.000 0.940 0.000 0.000 NA
#> SRR1201792 3 0.1267 0.8227 0.000 0.000 0.940 0.000 0.000 NA
#> SRR1201791 3 0.1267 0.8249 0.000 0.000 0.940 0.000 0.000 NA
#> SRR1201807 3 0.1387 0.8179 0.000 0.000 0.932 0.000 0.000 NA
#> SRR1201808 3 0.1387 0.8179 0.000 0.000 0.932 0.000 0.000 NA
#> SRR1201803 3 0.1387 0.8179 0.000 0.000 0.932 0.000 0.000 NA
#> SRR1201804 3 0.1387 0.8179 0.000 0.000 0.932 0.000 0.000 NA
#> SRR1201805 3 0.1387 0.8179 0.000 0.000 0.932 0.000 0.000 NA
#> SRR1201806 3 0.1387 0.8179 0.000 0.000 0.932 0.000 0.000 NA
#> SRR1201801 3 0.1387 0.8179 0.000 0.000 0.932 0.000 0.000 NA
#> SRR1201802 3 0.1387 0.8179 0.000 0.000 0.932 0.000 0.000 NA
#> SRR1201800 3 0.1204 0.8245 0.000 0.000 0.944 0.000 0.000 NA
#> SRR1201814 3 0.1075 0.8302 0.000 0.000 0.952 0.000 0.000 NA
#> SRR1201816 3 0.1075 0.8302 0.000 0.000 0.952 0.000 0.000 NA
#> SRR1201815 3 0.1075 0.8302 0.000 0.000 0.952 0.000 0.000 NA
#> SRR1201819 3 0.1075 0.8302 0.000 0.000 0.952 0.000 0.000 NA
#> SRR1201820 3 0.1075 0.8302 0.000 0.000 0.952 0.000 0.000 NA
#> SRR1201813 3 0.1007 0.8302 0.000 0.000 0.956 0.000 0.000 NA
#> SRR1201817 3 0.1075 0.8302 0.000 0.000 0.952 0.000 0.000 NA
#> SRR1201818 3 0.1075 0.8302 0.000 0.000 0.952 0.000 0.000 NA
#> SRR1201825 5 0.4204 0.6700 0.000 0.000 0.272 0.004 0.688 NA
#> SRR1201827 3 0.2046 0.8140 0.000 0.000 0.908 0.000 0.060 NA
#> SRR1201828 3 0.2046 0.8140 0.000 0.000 0.908 0.000 0.060 NA
#> SRR1201826 3 0.2558 0.8036 0.000 0.000 0.868 0.000 0.104 NA
#> SRR1201829 3 0.2046 0.8140 0.000 0.000 0.908 0.000 0.060 NA
#> SRR1201830 3 0.2046 0.8140 0.000 0.000 0.908 0.000 0.060 NA
#> SRR1201831 3 0.2046 0.8140 0.000 0.000 0.908 0.000 0.060 NA
#> SRR1201832 3 0.2046 0.8140 0.000 0.000 0.908 0.000 0.060 NA
#> SRR1201833 3 0.2106 0.8118 0.000 0.000 0.904 0.000 0.064 NA
#> SRR1201865 3 0.3821 0.6243 0.000 0.000 0.740 0.000 0.220 NA
#> SRR1201866 3 0.3821 0.6243 0.000 0.000 0.740 0.000 0.220 NA
#> SRR1201867 3 0.3808 0.6142 0.000 0.000 0.736 0.000 0.228 NA
#> SRR1201861 3 0.3821 0.6243 0.000 0.000 0.740 0.000 0.220 NA
#> SRR1201862 3 0.3755 0.6302 0.000 0.000 0.744 0.000 0.220 NA
#> SRR1201863 3 0.3821 0.6243 0.000 0.000 0.740 0.000 0.220 NA
#> SRR1201859 3 0.4337 -0.3289 0.000 0.000 0.500 0.000 0.480 NA
#> SRR1201864 3 0.3821 0.6243 0.000 0.000 0.740 0.000 0.220 NA
#> SRR1201860 3 0.3808 0.6142 0.000 0.000 0.736 0.000 0.228 NA
#> SRR1201873 5 0.4172 0.4764 0.000 0.000 0.460 0.000 0.528 NA
#> SRR1201871 5 0.4170 0.6831 0.000 0.000 0.328 0.004 0.648 NA
#> SRR1201872 5 0.4262 0.4213 0.000 0.000 0.476 0.000 0.508 NA
#> SRR1201980 3 0.3408 0.7307 0.000 0.000 0.800 0.000 0.152 NA
#> SRR1201979 3 0.3658 0.6568 0.000 0.000 0.752 0.000 0.216 NA
#> SRR1201982 3 0.2843 0.7790 0.000 0.000 0.848 0.000 0.116 NA
#> SRR1201981 3 0.3283 0.7433 0.000 0.000 0.804 0.000 0.160 NA
#> SRR1201998 3 0.2365 0.8087 0.000 0.000 0.888 0.000 0.072 NA
#> SRR1201996 3 0.2065 0.8249 0.000 0.000 0.912 0.004 0.052 NA
#> SRR1201997 3 0.1865 0.8263 0.000 0.000 0.920 0.000 0.040 NA
#> SRR1202005 3 0.1615 0.8295 0.000 0.000 0.928 0.004 0.004 NA
#> SRR1202006 3 0.1531 0.8258 0.000 0.000 0.928 0.004 0.000 NA
#> SRR1202088 3 0.4042 0.4157 0.000 0.000 0.664 0.004 0.316 NA
#> SRR1202087 5 0.4107 0.4881 0.000 0.000 0.452 0.004 0.540 NA
#> SRR1202093 3 0.1625 0.8262 0.000 0.000 0.928 0.000 0.060 NA
#> SRR1202092 3 0.1918 0.8155 0.000 0.000 0.904 0.000 0.088 NA
#> SRR1202288 3 0.2198 0.8171 0.000 0.012 0.908 0.008 0.008 NA
#> SRR1202289 3 0.1387 0.8179 0.000 0.000 0.932 0.000 0.000 NA
#> SRR1202299 3 0.1204 0.8245 0.000 0.000 0.944 0.000 0.000 NA
#> SRR1202298 3 0.1204 0.8245 0.000 0.000 0.944 0.000 0.000 NA
#> SRR1202303 3 0.3148 0.7747 0.000 0.000 0.840 0.004 0.092 NA
#> SRR1202372 3 0.1204 0.8250 0.000 0.000 0.944 0.000 0.000 NA
#> SRR1202371 3 0.1668 0.8252 0.000 0.000 0.928 0.004 0.008 NA
#> SRR1202563 3 0.1965 0.8355 0.000 0.008 0.924 0.004 0.024 NA
#> SRR1202565 3 0.1116 0.8377 0.000 0.000 0.960 0.004 0.008 NA
#> SRR1202564 3 0.1155 0.8366 0.000 0.000 0.956 0.004 0.004 NA
#> SRR1202649 3 0.2697 0.8141 0.000 0.004 0.872 0.004 0.092 NA
#> SRR1202650 3 0.1693 0.8360 0.000 0.000 0.932 0.004 0.044 NA
#> SRR1202651 3 0.1411 0.8298 0.000 0.000 0.936 0.004 0.000 NA
#> SRR1202843 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1202844 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1202845 3 0.1644 0.8366 0.000 0.000 0.932 0.004 0.012 NA
#> SRR1202847 3 0.1477 0.8376 0.000 0.000 0.940 0.004 0.008 NA
#> SRR1202846 3 0.1477 0.8376 0.000 0.000 0.940 0.004 0.008 NA
#> SRR1202945 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1202949 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1202977 1 0.0363 0.9735 0.988 0.000 0.000 0.000 0.000 NA
#> SRR1202978 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1202979 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1202990 1 0.0146 0.9785 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1202999 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203005 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203006 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203007 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203009 1 0.7988 -0.2944 0.388 0.136 0.008 0.152 0.032 NA
#> SRR1203008 1 0.1570 0.9339 0.948 0.004 0.012 0.008 0.020 NA
#> SRR1203010 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203011 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203025 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203026 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203027 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203061 1 0.1411 0.9302 0.936 0.004 0.000 0.000 0.000 NA
#> SRR1203089 1 0.0146 0.9785 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1203125 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203128 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203129 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203130 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203132 3 0.3332 0.7403 0.000 0.000 0.808 0.000 0.144 NA
#> SRR1203131 3 0.3745 0.6186 0.000 0.000 0.732 0.000 0.240 NA
#> SRR1203133 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203138 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203760 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203761 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203770 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203771 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203772 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203773 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203774 1 0.1082 0.9487 0.956 0.000 0.000 0.004 0.000 NA
#> SRR1203775 1 0.3622 0.7081 0.760 0.024 0.000 0.004 0.000 NA
#> SRR1203800 1 0.2692 0.8221 0.840 0.012 0.000 0.000 0.000 NA
#> SRR1203801 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203802 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203803 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203804 1 0.0790 0.9589 0.968 0.000 0.000 0.000 0.000 NA
#> SRR1203805 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203806 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203807 1 0.1075 0.9450 0.952 0.000 0.000 0.000 0.000 NA
#> SRR1203808 1 0.0603 0.9681 0.980 0.000 0.000 0.004 0.000 NA
#> SRR1203811 1 0.1219 0.9417 0.948 0.004 0.000 0.000 0.000 NA
#> SRR1203812 1 0.0363 0.9735 0.988 0.000 0.000 0.000 0.000 NA
#> SRR1203813 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203814 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203815 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203816 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203817 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203818 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203819 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203822 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203823 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203824 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203825 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203826 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203827 2 0.7307 0.0878 0.000 0.328 0.004 0.080 0.284 NA
#> SRR1203828 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203829 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203830 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203831 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203832 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203833 1 0.0260 0.9760 0.992 0.000 0.000 0.000 0.000 NA
#> SRR1203834 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203835 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203836 1 0.0146 0.9785 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1203837 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203838 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203839 1 0.0000 0.9809 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203842 2 0.3187 0.0877 0.000 0.864 0.048 0.028 0.048 NA
#> SRR1203843 1 0.0260 0.9760 0.992 0.000 0.000 0.000 0.000 NA
#> SRR1203845 3 0.1700 0.8181 0.000 0.000 0.916 0.004 0.000 NA
#> SRR1203844 3 0.1753 0.8157 0.000 0.000 0.912 0.004 0.000 NA
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["CV", "hclust"]
# you can also extract it by
# res = res_list["CV:hclust"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'CV' method.
#> Subgroups are detected by 'hclust' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 3.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 0.598 0.900 0.945 0.10035 0.972 0.972
#> 3 3 1.000 0.995 0.997 3.10527 0.615 0.604
#> 4 4 1.000 0.993 0.999 0.01409 0.995 0.991
#> 5 5 1.000 0.987 0.998 0.00157 1.000 1.000
#> 6 6 1.000 0.986 0.997 0.00442 1.000 1.000
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 3
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0.0000 0.934 0.000 1.000
#> SRR1201590 2 0.0000 0.934 0.000 1.000
#> SRR1201593 2 0.0000 0.934 0.000 1.000
#> SRR1201592 2 0.0000 0.934 0.000 1.000
#> SRR1201617 2 0.0000 0.934 0.000 1.000
#> SRR1201616 2 0.0000 0.934 0.000 1.000
#> SRR1201619 2 0.0000 0.934 0.000 1.000
#> SRR1201618 2 0.0000 0.934 0.000 1.000
#> SRR1201620 2 0.0000 0.934 0.000 1.000
#> SRR1201621 2 0.0000 0.934 0.000 1.000
#> SRR1201623 2 0.0000 0.934 0.000 1.000
#> SRR1201622 2 0.0000 0.934 0.000 1.000
#> SRR1201624 2 0.0672 0.929 0.008 0.992
#> SRR1201625 1 0.7219 1.000 0.800 0.200
#> SRR1201626 2 0.5408 0.853 0.124 0.876
#> SRR1201627 1 0.7219 1.000 0.800 0.200
#> SRR1201628 2 0.0000 0.934 0.000 1.000
#> SRR1201629 2 0.0000 0.934 0.000 1.000
#> SRR1201630 2 0.0000 0.934 0.000 1.000
#> SRR1201631 2 0.0000 0.934 0.000 1.000
#> SRR1201641 2 0.0000 0.934 0.000 1.000
#> SRR1201640 2 0.0000 0.934 0.000 1.000
#> SRR1201643 2 0.0000 0.934 0.000 1.000
#> SRR1201644 2 0.0000 0.934 0.000 1.000
#> SRR1201661 2 0.0000 0.934 0.000 1.000
#> SRR1201662 2 0.0000 0.934 0.000 1.000
#> SRR1201663 2 0.0000 0.934 0.000 1.000
#> SRR1201664 2 0.0000 0.934 0.000 1.000
#> SRR1201665 2 0.0000 0.934 0.000 1.000
#> SRR1201666 2 0.0000 0.934 0.000 1.000
#> SRR1201667 2 0.0000 0.934 0.000 1.000
#> SRR1201668 2 0.0000 0.934 0.000 1.000
#> SRR1201670 2 0.0000 0.934 0.000 1.000
#> SRR1201669 2 0.0000 0.934 0.000 1.000
#> SRR1201673 2 0.0000 0.934 0.000 1.000
#> SRR1201672 2 0.0000 0.934 0.000 1.000
#> SRR1201671 2 0.0000 0.934 0.000 1.000
#> SRR1201677 2 0.0000 0.934 0.000 1.000
#> SRR1201676 2 0.0000 0.934 0.000 1.000
#> SRR1201675 2 0.0000 0.934 0.000 1.000
#> SRR1201674 2 0.0000 0.934 0.000 1.000
#> SRR1201678 2 0.0000 0.934 0.000 1.000
#> SRR1201682 2 0.0000 0.934 0.000 1.000
#> SRR1201683 2 0.0000 0.934 0.000 1.000
#> SRR1201680 2 0.0000 0.934 0.000 1.000
#> SRR1201681 2 0.0000 0.934 0.000 1.000
#> SRR1201679 2 0.0000 0.934 0.000 1.000
#> SRR1201686 2 0.0000 0.934 0.000 1.000
#> SRR1201687 2 0.0000 0.934 0.000 1.000
#> SRR1201688 2 0.0000 0.934 0.000 1.000
#> SRR1201689 2 0.0000 0.934 0.000 1.000
#> SRR1201685 2 0.0000 0.934 0.000 1.000
#> SRR1201692 2 0.0000 0.934 0.000 1.000
#> SRR1201691 2 0.0000 0.934 0.000 1.000
#> SRR1201690 2 0.0000 0.934 0.000 1.000
#> SRR1201696 2 0.0000 0.934 0.000 1.000
#> SRR1201695 2 0.0000 0.934 0.000 1.000
#> SRR1201694 2 0.0000 0.934 0.000 1.000
#> SRR1201693 2 0.0000 0.934 0.000 1.000
#> SRR1201697 2 0.0000 0.934 0.000 1.000
#> SRR1201698 2 0.0000 0.934 0.000 1.000
#> SRR1201700 2 0.0000 0.934 0.000 1.000
#> SRR1201708 2 0.0000 0.934 0.000 1.000
#> SRR1201707 2 0.0000 0.934 0.000 1.000
#> SRR1201706 2 0.0000 0.934 0.000 1.000
#> SRR1201702 2 0.0000 0.934 0.000 1.000
#> SRR1201705 2 0.0000 0.934 0.000 1.000
#> SRR1201701 2 0.0000 0.934 0.000 1.000
#> SRR1201704 2 0.0000 0.934 0.000 1.000
#> SRR1201703 2 0.0000 0.934 0.000 1.000
#> SRR1201716 2 0.0000 0.934 0.000 1.000
#> SRR1201715 2 0.0000 0.934 0.000 1.000
#> SRR1201717 2 0.0000 0.934 0.000 1.000
#> SRR1201712 2 0.0000 0.934 0.000 1.000
#> SRR1201709 2 0.0000 0.934 0.000 1.000
#> SRR1201711 2 0.0000 0.934 0.000 1.000
#> SRR1201714 2 0.0000 0.934 0.000 1.000
#> SRR1201713 2 0.0000 0.934 0.000 1.000
#> SRR1201710 2 0.0000 0.934 0.000 1.000
#> SRR1201719 2 0.0000 0.934 0.000 1.000
#> SRR1201718 2 0.0000 0.934 0.000 1.000
#> SRR1201721 2 0.0000 0.934 0.000 1.000
#> SRR1201720 2 0.0000 0.934 0.000 1.000
#> SRR1201723 2 0.0000 0.934 0.000 1.000
#> SRR1201722 2 0.0000 0.934 0.000 1.000
#> SRR1201725 2 0.0000 0.934 0.000 1.000
#> SRR1201724 2 0.0000 0.934 0.000 1.000
#> SRR1201726 2 0.0000 0.934 0.000 1.000
#> SRR1201727 2 0.0000 0.934 0.000 1.000
#> SRR1201731 2 0.0000 0.934 0.000 1.000
#> SRR1201730 2 0.0000 0.934 0.000 1.000
#> SRR1201734 2 0.0000 0.934 0.000 1.000
#> SRR1201733 2 0.0000 0.934 0.000 1.000
#> SRR1201736 2 0.0000 0.934 0.000 1.000
#> SRR1201737 2 0.0000 0.934 0.000 1.000
#> SRR1201739 2 0.0000 0.934 0.000 1.000
#> SRR1201738 2 0.0000 0.934 0.000 1.000
#> SRR1201742 2 0.0000 0.934 0.000 1.000
#> SRR1201743 2 0.0000 0.934 0.000 1.000
#> SRR1201745 2 0.0000 0.934 0.000 1.000
#> SRR1201744 2 0.0000 0.934 0.000 1.000
#> SRR1201749 2 0.0000 0.934 0.000 1.000
#> SRR1201750 2 0.0000 0.934 0.000 1.000
#> SRR1201752 2 0.0000 0.934 0.000 1.000
#> SRR1201751 2 0.0000 0.934 0.000 1.000
#> SRR1201754 2 0.0000 0.934 0.000 1.000
#> SRR1201753 2 0.0000 0.934 0.000 1.000
#> SRR1201758 2 0.1414 0.922 0.020 0.980
#> SRR1201759 2 0.0000 0.934 0.000 1.000
#> SRR1201760 2 0.0000 0.934 0.000 1.000
#> SRR1201761 2 0.0000 0.934 0.000 1.000
#> SRR1201763 1 0.7219 1.000 0.800 0.200
#> SRR1201762 2 0.5408 0.853 0.124 0.876
#> SRR1201764 2 0.0672 0.927 0.008 0.992
#> SRR1201766 2 0.0000 0.934 0.000 1.000
#> SRR1201768 2 0.0000 0.934 0.000 1.000
#> SRR1201769 2 0.0000 0.934 0.000 1.000
#> SRR1201767 2 0.0000 0.934 0.000 1.000
#> SRR1201770 2 0.0000 0.934 0.000 1.000
#> SRR1201771 2 0.0000 0.934 0.000 1.000
#> SRR1201772 2 0.0000 0.934 0.000 1.000
#> SRR1201773 2 0.0000 0.934 0.000 1.000
#> SRR1201774 2 0.0000 0.934 0.000 1.000
#> SRR1201786 2 0.0000 0.934 0.000 1.000
#> SRR1201784 2 0.0000 0.934 0.000 1.000
#> SRR1201785 2 0.0000 0.934 0.000 1.000
#> SRR1201778 2 0.0000 0.934 0.000 1.000
#> SRR1201779 2 0.0000 0.934 0.000 1.000
#> SRR1201781 2 0.0000 0.934 0.000 1.000
#> SRR1201780 2 0.0000 0.934 0.000 1.000
#> SRR1201783 2 0.0000 0.934 0.000 1.000
#> SRR1201782 2 0.0000 0.934 0.000 1.000
#> SRR1201798 2 0.0000 0.934 0.000 1.000
#> SRR1201797 2 0.0000 0.934 0.000 1.000
#> SRR1201796 2 0.0000 0.934 0.000 1.000
#> SRR1201795 2 0.0000 0.934 0.000 1.000
#> SRR1201799 2 0.0000 0.934 0.000 1.000
#> SRR1201794 2 0.0000 0.934 0.000 1.000
#> SRR1201793 2 0.0000 0.934 0.000 1.000
#> SRR1201792 2 0.0000 0.934 0.000 1.000
#> SRR1201791 2 0.0000 0.934 0.000 1.000
#> SRR1201807 2 0.0000 0.934 0.000 1.000
#> SRR1201808 2 0.0000 0.934 0.000 1.000
#> SRR1201803 2 0.0000 0.934 0.000 1.000
#> SRR1201804 2 0.0000 0.934 0.000 1.000
#> SRR1201805 2 0.0000 0.934 0.000 1.000
#> SRR1201806 2 0.0000 0.934 0.000 1.000
#> SRR1201801 2 0.0000 0.934 0.000 1.000
#> SRR1201802 2 0.0000 0.934 0.000 1.000
#> SRR1201800 2 0.0000 0.934 0.000 1.000
#> SRR1201814 2 0.0000 0.934 0.000 1.000
#> SRR1201816 2 0.0000 0.934 0.000 1.000
#> SRR1201815 2 0.0000 0.934 0.000 1.000
#> SRR1201819 2 0.0000 0.934 0.000 1.000
#> SRR1201820 2 0.0000 0.934 0.000 1.000
#> SRR1201813 2 0.0000 0.934 0.000 1.000
#> SRR1201817 2 0.0000 0.934 0.000 1.000
#> SRR1201818 2 0.0000 0.934 0.000 1.000
#> SRR1201825 2 0.0000 0.934 0.000 1.000
#> SRR1201827 2 0.0000 0.934 0.000 1.000
#> SRR1201828 2 0.0000 0.934 0.000 1.000
#> SRR1201826 2 0.0000 0.934 0.000 1.000
#> SRR1201829 2 0.0000 0.934 0.000 1.000
#> SRR1201830 2 0.0000 0.934 0.000 1.000
#> SRR1201831 2 0.0000 0.934 0.000 1.000
#> SRR1201832 2 0.0000 0.934 0.000 1.000
#> SRR1201833 2 0.0000 0.934 0.000 1.000
#> SRR1201865 2 0.0000 0.934 0.000 1.000
#> SRR1201866 2 0.0000 0.934 0.000 1.000
#> SRR1201867 2 0.0000 0.934 0.000 1.000
#> SRR1201861 2 0.0000 0.934 0.000 1.000
#> SRR1201862 2 0.0000 0.934 0.000 1.000
#> SRR1201863 2 0.0000 0.934 0.000 1.000
#> SRR1201859 2 0.0000 0.934 0.000 1.000
#> SRR1201864 2 0.0000 0.934 0.000 1.000
#> SRR1201860 2 0.0000 0.934 0.000 1.000
#> SRR1201873 2 0.0000 0.934 0.000 1.000
#> SRR1201871 2 0.0000 0.934 0.000 1.000
#> SRR1201872 2 0.0000 0.934 0.000 1.000
#> SRR1201980 2 0.0000 0.934 0.000 1.000
#> SRR1201979 2 0.0000 0.934 0.000 1.000
#> SRR1201982 2 0.0000 0.934 0.000 1.000
#> SRR1201981 2 0.0000 0.934 0.000 1.000
#> SRR1201998 2 0.0000 0.934 0.000 1.000
#> SRR1201996 2 0.0000 0.934 0.000 1.000
#> SRR1201997 2 0.0000 0.934 0.000 1.000
#> SRR1202005 2 0.0000 0.934 0.000 1.000
#> SRR1202006 2 0.0000 0.934 0.000 1.000
#> SRR1202088 2 0.0000 0.934 0.000 1.000
#> SRR1202087 2 0.0000 0.934 0.000 1.000
#> SRR1202093 2 0.0000 0.934 0.000 1.000
#> SRR1202092 2 0.0000 0.934 0.000 1.000
#> SRR1202288 2 0.0000 0.934 0.000 1.000
#> SRR1202289 2 0.0000 0.934 0.000 1.000
#> SRR1202299 2 0.0000 0.934 0.000 1.000
#> SRR1202298 2 0.0000 0.934 0.000 1.000
#> SRR1202303 1 0.7219 1.000 0.800 0.200
#> SRR1202372 2 0.0000 0.934 0.000 1.000
#> SRR1202371 2 0.0000 0.934 0.000 1.000
#> SRR1202563 2 0.0000 0.934 0.000 1.000
#> SRR1202565 2 0.0000 0.934 0.000 1.000
#> SRR1202564 2 0.0000 0.934 0.000 1.000
#> SRR1202649 2 0.0000 0.934 0.000 1.000
#> SRR1202650 2 0.0000 0.934 0.000 1.000
#> SRR1202651 2 0.0000 0.934 0.000 1.000
#> SRR1202843 2 0.7219 0.799 0.200 0.800
#> SRR1202844 2 0.7219 0.799 0.200 0.800
#> SRR1202845 2 0.0000 0.934 0.000 1.000
#> SRR1202847 2 0.0000 0.934 0.000 1.000
#> SRR1202846 2 0.0000 0.934 0.000 1.000
#> SRR1202945 2 0.7219 0.799 0.200 0.800
#> SRR1202949 2 0.7219 0.799 0.200 0.800
#> SRR1202977 2 0.7219 0.799 0.200 0.800
#> SRR1202978 2 0.7219 0.799 0.200 0.800
#> SRR1202979 2 0.7219 0.799 0.200 0.800
#> SRR1202990 2 0.7219 0.799 0.200 0.800
#> SRR1202999 2 0.7219 0.799 0.200 0.800
#> SRR1203005 2 0.7219 0.799 0.200 0.800
#> SRR1203006 2 0.7219 0.799 0.200 0.800
#> SRR1203007 2 0.7219 0.799 0.200 0.800
#> SRR1203009 2 0.7219 0.799 0.200 0.800
#> SRR1203008 2 0.7219 0.799 0.200 0.800
#> SRR1203010 2 0.7219 0.799 0.200 0.800
#> SRR1203011 2 0.7219 0.799 0.200 0.800
#> SRR1203025 2 0.7219 0.799 0.200 0.800
#> SRR1203026 2 0.7219 0.799 0.200 0.800
#> SRR1203027 2 0.7219 0.799 0.200 0.800
#> SRR1203061 2 0.7219 0.799 0.200 0.800
#> SRR1203089 2 0.7219 0.799 0.200 0.800
#> SRR1203125 2 0.7219 0.799 0.200 0.800
#> SRR1203128 2 0.7219 0.799 0.200 0.800
#> SRR1203129 2 0.7219 0.799 0.200 0.800
#> SRR1203130 2 0.7219 0.799 0.200 0.800
#> SRR1203132 2 0.0000 0.934 0.000 1.000
#> SRR1203131 2 0.0000 0.934 0.000 1.000
#> SRR1203133 2 0.7219 0.799 0.200 0.800
#> SRR1203138 2 0.7219 0.799 0.200 0.800
#> SRR1203760 2 0.7219 0.799 0.200 0.800
#> SRR1203761 2 0.7219 0.799 0.200 0.800
#> SRR1203770 2 0.7219 0.799 0.200 0.800
#> SRR1203771 2 0.7219 0.799 0.200 0.800
#> SRR1203772 2 0.7219 0.799 0.200 0.800
#> SRR1203773 2 0.7219 0.799 0.200 0.800
#> SRR1203774 2 0.7219 0.799 0.200 0.800
#> SRR1203775 2 0.7219 0.799 0.200 0.800
#> SRR1203800 2 0.7219 0.799 0.200 0.800
#> SRR1203801 2 0.7219 0.799 0.200 0.800
#> SRR1203802 2 0.7219 0.799 0.200 0.800
#> SRR1203803 2 0.7219 0.799 0.200 0.800
#> SRR1203804 2 0.7219 0.799 0.200 0.800
#> SRR1203805 2 0.7219 0.799 0.200 0.800
#> SRR1203806 2 0.7219 0.799 0.200 0.800
#> SRR1203807 2 0.7219 0.799 0.200 0.800
#> SRR1203808 2 0.7219 0.799 0.200 0.800
#> SRR1203811 2 0.7219 0.799 0.200 0.800
#> SRR1203812 2 0.7219 0.799 0.200 0.800
#> SRR1203813 2 0.7219 0.799 0.200 0.800
#> SRR1203814 2 0.7219 0.799 0.200 0.800
#> SRR1203815 2 0.7219 0.799 0.200 0.800
#> SRR1203816 2 0.7219 0.799 0.200 0.800
#> SRR1203817 2 0.7219 0.799 0.200 0.800
#> SRR1203818 2 0.7219 0.799 0.200 0.800
#> SRR1203819 2 0.7219 0.799 0.200 0.800
#> SRR1203822 2 0.7219 0.799 0.200 0.800
#> SRR1203823 2 0.7219 0.799 0.200 0.800
#> SRR1203824 2 0.7219 0.799 0.200 0.800
#> SRR1203825 2 0.7219 0.799 0.200 0.800
#> SRR1203826 2 0.7219 0.799 0.200 0.800
#> SRR1203827 2 0.7219 0.799 0.200 0.800
#> SRR1203828 2 0.7219 0.799 0.200 0.800
#> SRR1203829 2 0.7219 0.799 0.200 0.800
#> SRR1203830 2 0.7219 0.799 0.200 0.800
#> SRR1203831 2 0.7219 0.799 0.200 0.800
#> SRR1203832 2 0.7219 0.799 0.200 0.800
#> SRR1203833 2 0.7219 0.799 0.200 0.800
#> SRR1203834 2 0.7219 0.799 0.200 0.800
#> SRR1203835 2 0.7219 0.799 0.200 0.800
#> SRR1203836 2 0.7219 0.799 0.200 0.800
#> SRR1203837 2 0.7219 0.799 0.200 0.800
#> SRR1203838 2 0.7219 0.799 0.200 0.800
#> SRR1203839 2 0.7219 0.799 0.200 0.800
#> SRR1203842 2 0.7219 0.799 0.200 0.800
#> SRR1203843 2 0.7219 0.799 0.200 0.800
#> SRR1203845 2 0.0000 0.934 0.000 1.000
#> SRR1203844 2 0.0000 0.934 0.000 1.000
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201590 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201593 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201592 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201617 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201616 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201619 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201618 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201620 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201621 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201623 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201622 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201624 1 0.6625 0.539 0.744 0.176 0.080
#> SRR1201625 3 0.0000 1.000 0.000 0.000 1.000
#> SRR1201626 1 0.2448 0.910 0.924 0.000 0.076
#> SRR1201627 3 0.0000 1.000 0.000 0.000 1.000
#> SRR1201628 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201629 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201630 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201631 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201641 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201640 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201643 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201644 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201661 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201662 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201663 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201664 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201665 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201666 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201667 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201668 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201670 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201669 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201673 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201672 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201671 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201677 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201676 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201675 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201674 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201678 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201682 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201683 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201680 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201681 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201679 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201686 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201687 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201688 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201689 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201685 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201692 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201691 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201690 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201696 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201695 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201694 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201693 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201697 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201698 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201700 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201708 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201707 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201706 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201702 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201705 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201701 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201704 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201703 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201716 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201715 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201717 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201712 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201709 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201711 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201714 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201713 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201710 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201719 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201718 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201721 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201720 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201723 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201722 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201725 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201724 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201726 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201727 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201731 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201730 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201734 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201733 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201736 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201737 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201739 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201738 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201742 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201743 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201745 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201744 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201749 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201750 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201752 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201751 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201754 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201753 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201758 2 0.0892 0.976 0.020 0.980 0.000
#> SRR1201759 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201760 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201761 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201763 3 0.0000 1.000 0.000 0.000 1.000
#> SRR1201762 1 0.2448 0.910 0.924 0.000 0.076
#> SRR1201764 2 0.0661 0.988 0.004 0.988 0.008
#> SRR1201766 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201768 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201769 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201767 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201770 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201771 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201772 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201773 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201774 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201786 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201784 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201785 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201778 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201779 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201781 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201780 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201783 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201782 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201798 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201797 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201796 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201795 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201799 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201794 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201793 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201792 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201791 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201807 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201808 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201803 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201804 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201805 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201806 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201801 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201802 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201800 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201814 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201816 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201815 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201819 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201820 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201813 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201817 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201818 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201825 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201827 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201828 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201826 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201829 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201830 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201831 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201832 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201833 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201865 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201866 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201867 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201861 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201862 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201863 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201859 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201864 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201860 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201873 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201871 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201872 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201980 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201979 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201982 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201981 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201998 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201996 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1201997 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202005 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202006 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202088 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202087 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202093 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202092 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202288 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202289 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202299 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202298 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202303 3 0.0000 1.000 0.000 0.000 1.000
#> SRR1202372 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202371 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202563 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202565 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202564 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202649 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202650 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202651 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202843 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1202844 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1202845 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202847 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202846 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1202945 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1202949 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1202977 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1202978 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1202979 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1202990 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1202999 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203005 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203006 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203007 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203009 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203008 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203010 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203011 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203025 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203026 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203027 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203061 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203089 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203125 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203128 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203129 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203130 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203132 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1203131 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1203133 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203138 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203760 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203761 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203770 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203771 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203772 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203773 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203774 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203775 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203800 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203801 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203802 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203803 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203804 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203805 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203806 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203807 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203808 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203811 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203812 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203813 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203814 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203815 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203816 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203817 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203818 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203819 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203822 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203823 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203824 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203825 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203826 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203827 1 0.1411 0.935 0.964 0.036 0.000
#> SRR1203828 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203829 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203830 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203831 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203832 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203833 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203834 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203835 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203836 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203837 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203838 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203839 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203842 1 0.1411 0.935 0.964 0.036 0.000
#> SRR1203843 1 0.0237 0.991 0.996 0.004 0.000
#> SRR1203845 2 0.0000 1.000 0.000 1.000 0.000
#> SRR1203844 2 0.0000 1.000 0.000 1.000 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201590 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201593 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201592 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201617 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201616 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201619 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201618 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201620 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201621 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201623 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201622 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201624 4 0.3494 0.294 0.000 0.172 0.004 0.824
#> SRR1201625 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1201626 4 0.0336 0.512 0.008 0.000 0.000 0.992
#> SRR1201627 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1201628 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201629 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201630 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201631 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201641 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201640 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201643 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201644 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201661 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201662 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201663 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201664 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201665 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201666 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201667 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201668 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201670 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201669 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201673 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201672 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201671 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201677 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201676 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201675 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201674 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201678 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201682 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201683 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201680 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201681 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201679 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201686 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201687 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201688 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201689 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201685 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201692 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201691 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201690 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201696 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201695 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201694 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201693 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201697 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201698 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201700 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201708 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201707 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201706 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201702 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201705 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201701 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201704 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201703 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201716 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201715 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201717 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201712 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201709 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201711 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201714 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201713 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201710 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201719 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201718 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201721 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201720 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201723 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201722 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201725 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201724 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201726 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201727 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201731 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201730 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201734 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201733 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201736 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201737 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201739 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201738 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201742 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201743 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201745 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201744 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201749 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201750 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201752 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201751 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201754 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201753 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201758 2 0.0707 0.975 0.020 0.980 0.000 0.000
#> SRR1201759 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201760 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201761 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201763 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1201762 4 0.0188 0.512 0.004 0.000 0.000 0.996
#> SRR1201764 2 0.0524 0.987 0.000 0.988 0.008 0.004
#> SRR1201766 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201768 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201769 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201767 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201770 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201771 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201772 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201773 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201774 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201786 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201784 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201785 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201778 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201779 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201781 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201780 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201783 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201782 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201798 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201797 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201796 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201795 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201799 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201794 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201793 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201792 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201791 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201807 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201808 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201803 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201804 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201805 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201806 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201801 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201802 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201800 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201814 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201816 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201815 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201819 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201820 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201813 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201817 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201818 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201825 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201827 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201828 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201826 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201829 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201830 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201831 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201832 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201833 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201865 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201866 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201867 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201861 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201862 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201863 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201859 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201864 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201860 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201873 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201871 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201872 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201980 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201979 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201982 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201981 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201998 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201996 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1201997 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202005 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202006 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202088 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202087 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202093 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202092 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202288 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202289 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202299 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202298 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202303 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1202372 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202371 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202563 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202565 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202564 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202649 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202650 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202651 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202843 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1202845 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202847 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202846 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1202945 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203132 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1203131 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1203133 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203827 1 0.1022 0.938 0.968 0.032 0.000 0.000
#> SRR1203828 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203842 1 0.1022 0.938 0.968 0.032 0.000 0.000
#> SRR1203843 1 0.0000 0.998 1.000 0.000 0.000 0.000
#> SRR1203845 2 0.0000 1.000 0.000 1.000 0.000 0.000
#> SRR1203844 2 0.0000 1.000 0.000 1.000 0.000 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201590 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201593 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201592 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201617 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201616 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201619 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201618 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201620 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201621 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201623 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201622 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201624 4 0.3584 0.171 0.000 0.108 0.004 0.832 0.056
#> SRR1201625 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201626 5 0.0000 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1201627 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201628 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201629 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201630 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201631 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201641 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201640 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201643 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201644 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201661 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201662 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201663 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201664 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201665 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201666 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201667 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201668 2 0.0162 0.995 0.000 0.996 0.000 0.004 0.000
#> SRR1201670 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201669 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201673 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201672 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201671 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201677 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201676 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201675 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201674 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201678 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201682 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201683 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201680 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201681 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201679 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201686 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201687 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201688 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201689 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201685 2 0.0290 0.991 0.000 0.992 0.000 0.008 0.000
#> SRR1201692 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201691 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201690 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201696 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201695 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201694 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201693 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201697 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201698 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201700 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201708 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201707 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201706 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201702 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201705 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201701 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201704 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201703 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201716 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201715 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201717 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201712 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201709 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201711 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201714 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201713 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201710 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201719 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201718 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201721 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201720 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201723 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201722 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201725 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201724 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201726 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201727 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201731 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201730 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201734 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201733 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201736 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201737 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201739 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201738 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201742 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201743 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201745 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201744 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201749 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201750 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201752 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201751 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201754 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201753 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201758 2 0.0898 0.967 0.020 0.972 0.000 0.008 0.000
#> SRR1201759 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201760 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201761 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201763 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201762 4 0.3816 -0.360 0.000 0.000 0.000 0.696 0.304
#> SRR1201764 2 0.1331 0.947 0.000 0.952 0.008 0.040 0.000
#> SRR1201766 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201768 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201769 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201767 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201770 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201771 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201772 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201773 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201774 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201786 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201784 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201785 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201778 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201779 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201781 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201780 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201783 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201782 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201798 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201797 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201796 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201795 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201799 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201794 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201793 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201792 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201791 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201807 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201808 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201803 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201804 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201805 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201806 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201801 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201802 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201800 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201814 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201816 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201815 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201819 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201820 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201813 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201817 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201818 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201825 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201827 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201828 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201826 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201829 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201830 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201831 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201832 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201833 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201865 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201866 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201867 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201861 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201862 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201863 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201859 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201864 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201860 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201873 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201871 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201872 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201980 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201979 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201982 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201981 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201998 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201996 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201997 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202005 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202006 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202088 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202087 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202093 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202092 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202288 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202289 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202299 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202298 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202303 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1202372 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202371 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202563 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202565 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202564 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202649 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202650 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202651 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202843 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1202845 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202847 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202846 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202945 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203132 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1203131 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1203133 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203827 1 0.0880 0.937 0.968 0.032 0.000 0.000 0.000
#> SRR1203828 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203842 1 0.0880 0.937 0.968 0.032 0.000 0.000 0.000
#> SRR1203843 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000
#> SRR1203845 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
#> SRR1203844 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201590 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201593 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201592 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201617 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201616 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201619 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201618 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201620 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201621 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201623 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201622 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201624 2 0.3259 0.000 0.000 0.772 0.000 0.000 0.012 0.216
#> SRR1201625 4 0.0000 1.000 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201626 5 0.0146 0.000 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1201627 4 0.0000 1.000 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201628 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201629 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201630 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201631 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201641 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201640 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201643 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201644 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201661 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201662 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201663 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201664 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201665 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201666 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201667 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201668 3 0.0146 0.994 0.000 0.004 0.996 0.000 0.000 0.000
#> SRR1201670 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201669 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201673 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201672 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201671 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201677 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201676 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201675 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201674 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201678 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201682 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201683 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201680 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201681 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201679 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201686 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201687 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201688 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201689 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201685 3 0.0547 0.978 0.000 0.020 0.980 0.000 0.000 0.000
#> SRR1201692 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201691 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201690 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201696 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201695 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201694 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201693 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201697 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201698 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201700 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201708 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201707 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201706 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201702 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201705 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201701 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201704 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201703 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201716 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201715 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201717 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201712 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201709 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201711 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201714 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201713 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201710 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201719 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201718 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201721 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201720 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201723 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201722 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201725 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201724 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201726 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201727 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201731 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201730 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201734 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201733 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201736 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201737 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201739 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201738 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201742 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201743 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201745 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201744 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201749 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201750 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201752 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201751 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201754 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201753 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201758 3 0.1092 0.956 0.020 0.020 0.960 0.000 0.000 0.000
#> SRR1201759 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201760 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201761 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201763 4 0.0000 1.000 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201762 6 0.0000 0.000 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1201764 3 0.3744 0.614 0.000 0.264 0.720 0.008 0.004 0.004
#> SRR1201766 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201768 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201769 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201767 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201770 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201771 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201772 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201773 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201774 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201786 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201784 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201785 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201778 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201779 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201781 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201780 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201783 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201782 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201798 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201797 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201796 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201795 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201799 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201794 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201793 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201792 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201791 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201807 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201808 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201803 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201804 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201805 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201806 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201801 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201802 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201800 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201814 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201816 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201815 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201819 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201820 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201813 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201817 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201818 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201825 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201827 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201828 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201826 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201829 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201830 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201831 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201832 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201833 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201865 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201866 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201867 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201861 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201862 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201863 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201859 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201864 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201860 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201873 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201871 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201872 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201980 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201979 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201982 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201981 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201998 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201996 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201997 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202005 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202006 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202088 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202087 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202093 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202092 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202288 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202289 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202299 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202298 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202303 4 0.0000 1.000 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1202372 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202371 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202563 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202565 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202564 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202649 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202650 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202651 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202843 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202845 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202847 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202846 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1202945 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1203131 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1203133 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203827 1 0.0790 0.937 0.968 0.000 0.032 0.000 0.000 0.000
#> SRR1203828 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203842 1 0.0790 0.937 0.968 0.000 0.032 0.000 0.000 0.000
#> SRR1203843 1 0.0000 0.998 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203845 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1203844 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["CV", "kmeans"]
# you can also extract it by
# res = res_list["CV:kmeans"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'CV' method.
#> Subgroups are detected by 'kmeans' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 2.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 0.991 0.991 0.3831 0.611 0.611
#> 3 3 0.631 0.884 0.896 0.5145 0.769 0.623
#> 4 4 0.716 0.815 0.857 0.1538 0.996 0.988
#> 5 5 0.778 0.815 0.836 0.0698 0.866 0.649
#> 6 6 0.755 0.797 0.843 0.0516 0.942 0.788
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 2
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0.0000 0.997 0.000 1.000
#> SRR1201590 2 0.0000 0.997 0.000 1.000
#> SRR1201593 2 0.0000 0.997 0.000 1.000
#> SRR1201592 2 0.0000 0.997 0.000 1.000
#> SRR1201617 2 0.0000 0.997 0.000 1.000
#> SRR1201616 2 0.0000 0.997 0.000 1.000
#> SRR1201619 2 0.0000 0.997 0.000 1.000
#> SRR1201618 2 0.0000 0.997 0.000 1.000
#> SRR1201620 2 0.0000 0.997 0.000 1.000
#> SRR1201621 2 0.0000 0.997 0.000 1.000
#> SRR1201623 2 0.0000 0.997 0.000 1.000
#> SRR1201622 2 0.0000 0.997 0.000 1.000
#> SRR1201624 2 0.5294 0.868 0.120 0.880
#> SRR1201625 2 0.1414 0.979 0.020 0.980
#> SRR1201626 1 0.6048 0.836 0.852 0.148
#> SRR1201627 2 0.1414 0.979 0.020 0.980
#> SRR1201628 2 0.0000 0.997 0.000 1.000
#> SRR1201629 2 0.0000 0.997 0.000 1.000
#> SRR1201630 2 0.0000 0.997 0.000 1.000
#> SRR1201631 2 0.0000 0.997 0.000 1.000
#> SRR1201641 2 0.0000 0.997 0.000 1.000
#> SRR1201640 2 0.0000 0.997 0.000 1.000
#> SRR1201643 2 0.0000 0.997 0.000 1.000
#> SRR1201644 2 0.0000 0.997 0.000 1.000
#> SRR1201661 2 0.0000 0.997 0.000 1.000
#> SRR1201662 2 0.0000 0.997 0.000 1.000
#> SRR1201663 2 0.0000 0.997 0.000 1.000
#> SRR1201664 2 0.0000 0.997 0.000 1.000
#> SRR1201665 2 0.0000 0.997 0.000 1.000
#> SRR1201666 2 0.0000 0.997 0.000 1.000
#> SRR1201667 2 0.0000 0.997 0.000 1.000
#> SRR1201668 2 0.0000 0.997 0.000 1.000
#> SRR1201670 2 0.0000 0.997 0.000 1.000
#> SRR1201669 2 0.0000 0.997 0.000 1.000
#> SRR1201673 2 0.0000 0.997 0.000 1.000
#> SRR1201672 2 0.0000 0.997 0.000 1.000
#> SRR1201671 2 0.0000 0.997 0.000 1.000
#> SRR1201677 2 0.0000 0.997 0.000 1.000
#> SRR1201676 2 0.0000 0.997 0.000 1.000
#> SRR1201675 2 0.0000 0.997 0.000 1.000
#> SRR1201674 2 0.0000 0.997 0.000 1.000
#> SRR1201678 2 0.0000 0.997 0.000 1.000
#> SRR1201682 2 0.0000 0.997 0.000 1.000
#> SRR1201683 2 0.0000 0.997 0.000 1.000
#> SRR1201680 2 0.0000 0.997 0.000 1.000
#> SRR1201681 2 0.0000 0.997 0.000 1.000
#> SRR1201679 2 0.0000 0.997 0.000 1.000
#> SRR1201686 2 0.0000 0.997 0.000 1.000
#> SRR1201687 2 0.0000 0.997 0.000 1.000
#> SRR1201688 2 0.0000 0.997 0.000 1.000
#> SRR1201689 2 0.0000 0.997 0.000 1.000
#> SRR1201685 2 0.0000 0.997 0.000 1.000
#> SRR1201692 2 0.0000 0.997 0.000 1.000
#> SRR1201691 2 0.0000 0.997 0.000 1.000
#> SRR1201690 2 0.0000 0.997 0.000 1.000
#> SRR1201696 2 0.0000 0.997 0.000 1.000
#> SRR1201695 2 0.0000 0.997 0.000 1.000
#> SRR1201694 2 0.0000 0.997 0.000 1.000
#> SRR1201693 2 0.0000 0.997 0.000 1.000
#> SRR1201697 2 0.0000 0.997 0.000 1.000
#> SRR1201698 2 0.0000 0.997 0.000 1.000
#> SRR1201700 2 0.0000 0.997 0.000 1.000
#> SRR1201708 2 0.0000 0.997 0.000 1.000
#> SRR1201707 2 0.0000 0.997 0.000 1.000
#> SRR1201706 2 0.0000 0.997 0.000 1.000
#> SRR1201702 2 0.0000 0.997 0.000 1.000
#> SRR1201705 2 0.0000 0.997 0.000 1.000
#> SRR1201701 2 0.0000 0.997 0.000 1.000
#> SRR1201704 2 0.0000 0.997 0.000 1.000
#> SRR1201703 2 0.0000 0.997 0.000 1.000
#> SRR1201716 2 0.0000 0.997 0.000 1.000
#> SRR1201715 2 0.0000 0.997 0.000 1.000
#> SRR1201717 2 0.0000 0.997 0.000 1.000
#> SRR1201712 2 0.0000 0.997 0.000 1.000
#> SRR1201709 2 0.0000 0.997 0.000 1.000
#> SRR1201711 2 0.0000 0.997 0.000 1.000
#> SRR1201714 2 0.0000 0.997 0.000 1.000
#> SRR1201713 2 0.0000 0.997 0.000 1.000
#> SRR1201710 2 0.0000 0.997 0.000 1.000
#> SRR1201719 2 0.0000 0.997 0.000 1.000
#> SRR1201718 2 0.0000 0.997 0.000 1.000
#> SRR1201721 2 0.0000 0.997 0.000 1.000
#> SRR1201720 2 0.0000 0.997 0.000 1.000
#> SRR1201723 2 0.0000 0.997 0.000 1.000
#> SRR1201722 2 0.0000 0.997 0.000 1.000
#> SRR1201725 2 0.0000 0.997 0.000 1.000
#> SRR1201724 2 0.0000 0.997 0.000 1.000
#> SRR1201726 2 0.0000 0.997 0.000 1.000
#> SRR1201727 2 0.0000 0.997 0.000 1.000
#> SRR1201731 2 0.0000 0.997 0.000 1.000
#> SRR1201730 2 0.0000 0.997 0.000 1.000
#> SRR1201734 2 0.0000 0.997 0.000 1.000
#> SRR1201733 2 0.0000 0.997 0.000 1.000
#> SRR1201736 2 0.0000 0.997 0.000 1.000
#> SRR1201737 2 0.0000 0.997 0.000 1.000
#> SRR1201739 2 0.0000 0.997 0.000 1.000
#> SRR1201738 2 0.0000 0.997 0.000 1.000
#> SRR1201742 2 0.0000 0.997 0.000 1.000
#> SRR1201743 2 0.0000 0.997 0.000 1.000
#> SRR1201745 2 0.0000 0.997 0.000 1.000
#> SRR1201744 2 0.0000 0.997 0.000 1.000
#> SRR1201749 2 0.0000 0.997 0.000 1.000
#> SRR1201750 2 0.0000 0.997 0.000 1.000
#> SRR1201752 2 0.0000 0.997 0.000 1.000
#> SRR1201751 2 0.0000 0.997 0.000 1.000
#> SRR1201754 2 0.0000 0.997 0.000 1.000
#> SRR1201753 2 0.0000 0.997 0.000 1.000
#> SRR1201758 1 0.9775 0.331 0.588 0.412
#> SRR1201759 2 0.0000 0.997 0.000 1.000
#> SRR1201760 2 0.0000 0.997 0.000 1.000
#> SRR1201761 2 0.0000 0.997 0.000 1.000
#> SRR1201763 2 0.1414 0.979 0.020 0.980
#> SRR1201762 2 0.8386 0.634 0.268 0.732
#> SRR1201764 2 0.0000 0.997 0.000 1.000
#> SRR1201766 2 0.0000 0.997 0.000 1.000
#> SRR1201768 2 0.0000 0.997 0.000 1.000
#> SRR1201769 2 0.0000 0.997 0.000 1.000
#> SRR1201767 2 0.0000 0.997 0.000 1.000
#> SRR1201770 2 0.0000 0.997 0.000 1.000
#> SRR1201771 2 0.0000 0.997 0.000 1.000
#> SRR1201772 2 0.0000 0.997 0.000 1.000
#> SRR1201773 2 0.0000 0.997 0.000 1.000
#> SRR1201774 2 0.0000 0.997 0.000 1.000
#> SRR1201786 2 0.0000 0.997 0.000 1.000
#> SRR1201784 2 0.0000 0.997 0.000 1.000
#> SRR1201785 2 0.0000 0.997 0.000 1.000
#> SRR1201778 2 0.0000 0.997 0.000 1.000
#> SRR1201779 2 0.0000 0.997 0.000 1.000
#> SRR1201781 2 0.0000 0.997 0.000 1.000
#> SRR1201780 2 0.0000 0.997 0.000 1.000
#> SRR1201783 2 0.0000 0.997 0.000 1.000
#> SRR1201782 2 0.0000 0.997 0.000 1.000
#> SRR1201798 2 0.0000 0.997 0.000 1.000
#> SRR1201797 2 0.0000 0.997 0.000 1.000
#> SRR1201796 2 0.0000 0.997 0.000 1.000
#> SRR1201795 2 0.0000 0.997 0.000 1.000
#> SRR1201799 2 0.0000 0.997 0.000 1.000
#> SRR1201794 2 0.0000 0.997 0.000 1.000
#> SRR1201793 2 0.0000 0.997 0.000 1.000
#> SRR1201792 2 0.0000 0.997 0.000 1.000
#> SRR1201791 2 0.0000 0.997 0.000 1.000
#> SRR1201807 2 0.0000 0.997 0.000 1.000
#> SRR1201808 2 0.0000 0.997 0.000 1.000
#> SRR1201803 2 0.0000 0.997 0.000 1.000
#> SRR1201804 2 0.0000 0.997 0.000 1.000
#> SRR1201805 2 0.0000 0.997 0.000 1.000
#> SRR1201806 2 0.0000 0.997 0.000 1.000
#> SRR1201801 2 0.0000 0.997 0.000 1.000
#> SRR1201802 2 0.0000 0.997 0.000 1.000
#> SRR1201800 2 0.0000 0.997 0.000 1.000
#> SRR1201814 2 0.0000 0.997 0.000 1.000
#> SRR1201816 2 0.0000 0.997 0.000 1.000
#> SRR1201815 2 0.0000 0.997 0.000 1.000
#> SRR1201819 2 0.0000 0.997 0.000 1.000
#> SRR1201820 2 0.0000 0.997 0.000 1.000
#> SRR1201813 2 0.0000 0.997 0.000 1.000
#> SRR1201817 2 0.0000 0.997 0.000 1.000
#> SRR1201818 2 0.0000 0.997 0.000 1.000
#> SRR1201825 2 0.0000 0.997 0.000 1.000
#> SRR1201827 2 0.0938 0.986 0.012 0.988
#> SRR1201828 2 0.0938 0.986 0.012 0.988
#> SRR1201826 2 0.0000 0.997 0.000 1.000
#> SRR1201829 2 0.0938 0.986 0.012 0.988
#> SRR1201830 2 0.0938 0.986 0.012 0.988
#> SRR1201831 2 0.0938 0.986 0.012 0.988
#> SRR1201832 2 0.0938 0.986 0.012 0.988
#> SRR1201833 2 0.0938 0.986 0.012 0.988
#> SRR1201865 2 0.0000 0.997 0.000 1.000
#> SRR1201866 2 0.0000 0.997 0.000 1.000
#> SRR1201867 2 0.0000 0.997 0.000 1.000
#> SRR1201861 2 0.0000 0.997 0.000 1.000
#> SRR1201862 2 0.0000 0.997 0.000 1.000
#> SRR1201863 2 0.0000 0.997 0.000 1.000
#> SRR1201859 2 0.0000 0.997 0.000 1.000
#> SRR1201864 2 0.0000 0.997 0.000 1.000
#> SRR1201860 2 0.0000 0.997 0.000 1.000
#> SRR1201873 2 0.0000 0.997 0.000 1.000
#> SRR1201871 2 0.0000 0.997 0.000 1.000
#> SRR1201872 2 0.0000 0.997 0.000 1.000
#> SRR1201980 2 0.0000 0.997 0.000 1.000
#> SRR1201979 2 0.0000 0.997 0.000 1.000
#> SRR1201982 2 0.0000 0.997 0.000 1.000
#> SRR1201981 2 0.0000 0.997 0.000 1.000
#> SRR1201998 2 0.0000 0.997 0.000 1.000
#> SRR1201996 2 0.0000 0.997 0.000 1.000
#> SRR1201997 2 0.0000 0.997 0.000 1.000
#> SRR1202005 2 0.0000 0.997 0.000 1.000
#> SRR1202006 2 0.0000 0.997 0.000 1.000
#> SRR1202088 2 0.0000 0.997 0.000 1.000
#> SRR1202087 2 0.0000 0.997 0.000 1.000
#> SRR1202093 2 0.0000 0.997 0.000 1.000
#> SRR1202092 2 0.0000 0.997 0.000 1.000
#> SRR1202288 2 0.0000 0.997 0.000 1.000
#> SRR1202289 2 0.0000 0.997 0.000 1.000
#> SRR1202299 2 0.0000 0.997 0.000 1.000
#> SRR1202298 2 0.0000 0.997 0.000 1.000
#> SRR1202303 2 0.1414 0.979 0.020 0.980
#> SRR1202372 2 0.0000 0.997 0.000 1.000
#> SRR1202371 2 0.0000 0.997 0.000 1.000
#> SRR1202563 2 0.0000 0.997 0.000 1.000
#> SRR1202565 2 0.0000 0.997 0.000 1.000
#> SRR1202564 2 0.0000 0.997 0.000 1.000
#> SRR1202649 2 0.0376 0.994 0.004 0.996
#> SRR1202650 2 0.0000 0.997 0.000 1.000
#> SRR1202651 2 0.0000 0.997 0.000 1.000
#> SRR1202843 1 0.1414 0.993 0.980 0.020
#> SRR1202844 1 0.1414 0.993 0.980 0.020
#> SRR1202845 2 0.0000 0.997 0.000 1.000
#> SRR1202847 2 0.0000 0.997 0.000 1.000
#> SRR1202846 2 0.0000 0.997 0.000 1.000
#> SRR1202945 1 0.1414 0.993 0.980 0.020
#> SRR1202949 1 0.1414 0.993 0.980 0.020
#> SRR1202977 1 0.1414 0.993 0.980 0.020
#> SRR1202978 1 0.1414 0.993 0.980 0.020
#> SRR1202979 1 0.1414 0.993 0.980 0.020
#> SRR1202990 1 0.1414 0.993 0.980 0.020
#> SRR1202999 1 0.1414 0.993 0.980 0.020
#> SRR1203005 1 0.1414 0.993 0.980 0.020
#> SRR1203006 1 0.1414 0.993 0.980 0.020
#> SRR1203007 1 0.1414 0.993 0.980 0.020
#> SRR1203009 1 0.1414 0.993 0.980 0.020
#> SRR1203008 1 0.1414 0.993 0.980 0.020
#> SRR1203010 1 0.1414 0.993 0.980 0.020
#> SRR1203011 1 0.1414 0.993 0.980 0.020
#> SRR1203025 1 0.1414 0.993 0.980 0.020
#> SRR1203026 1 0.1414 0.993 0.980 0.020
#> SRR1203027 1 0.1414 0.993 0.980 0.020
#> SRR1203061 1 0.1414 0.993 0.980 0.020
#> SRR1203089 1 0.1414 0.993 0.980 0.020
#> SRR1203125 1 0.1414 0.993 0.980 0.020
#> SRR1203128 1 0.1414 0.993 0.980 0.020
#> SRR1203129 1 0.1414 0.993 0.980 0.020
#> SRR1203130 1 0.1414 0.993 0.980 0.020
#> SRR1203132 2 0.0000 0.997 0.000 1.000
#> SRR1203131 2 0.0000 0.997 0.000 1.000
#> SRR1203133 1 0.1414 0.993 0.980 0.020
#> SRR1203138 1 0.1414 0.993 0.980 0.020
#> SRR1203760 1 0.1414 0.993 0.980 0.020
#> SRR1203761 1 0.1414 0.993 0.980 0.020
#> SRR1203770 1 0.1414 0.993 0.980 0.020
#> SRR1203771 1 0.1414 0.993 0.980 0.020
#> SRR1203772 1 0.1414 0.993 0.980 0.020
#> SRR1203773 1 0.1414 0.993 0.980 0.020
#> SRR1203774 1 0.1414 0.993 0.980 0.020
#> SRR1203775 1 0.1414 0.993 0.980 0.020
#> SRR1203800 1 0.1414 0.993 0.980 0.020
#> SRR1203801 1 0.1414 0.993 0.980 0.020
#> SRR1203802 1 0.1414 0.993 0.980 0.020
#> SRR1203803 1 0.1414 0.993 0.980 0.020
#> SRR1203804 1 0.1414 0.993 0.980 0.020
#> SRR1203805 1 0.1414 0.993 0.980 0.020
#> SRR1203806 1 0.1414 0.993 0.980 0.020
#> SRR1203807 1 0.1414 0.993 0.980 0.020
#> SRR1203808 1 0.1414 0.993 0.980 0.020
#> SRR1203811 1 0.1414 0.993 0.980 0.020
#> SRR1203812 1 0.1414 0.993 0.980 0.020
#> SRR1203813 1 0.1414 0.993 0.980 0.020
#> SRR1203814 1 0.1414 0.993 0.980 0.020
#> SRR1203815 1 0.1414 0.993 0.980 0.020
#> SRR1203816 1 0.1414 0.993 0.980 0.020
#> SRR1203817 1 0.1414 0.993 0.980 0.020
#> SRR1203818 1 0.1414 0.993 0.980 0.020
#> SRR1203819 1 0.1414 0.993 0.980 0.020
#> SRR1203822 1 0.1414 0.993 0.980 0.020
#> SRR1203823 1 0.1414 0.993 0.980 0.020
#> SRR1203824 1 0.1414 0.993 0.980 0.020
#> SRR1203825 1 0.1414 0.993 0.980 0.020
#> SRR1203826 1 0.1414 0.993 0.980 0.020
#> SRR1203827 1 0.1414 0.993 0.980 0.020
#> SRR1203828 1 0.1414 0.993 0.980 0.020
#> SRR1203829 1 0.1414 0.993 0.980 0.020
#> SRR1203830 1 0.1414 0.993 0.980 0.020
#> SRR1203831 1 0.1414 0.993 0.980 0.020
#> SRR1203832 1 0.1414 0.993 0.980 0.020
#> SRR1203833 1 0.1414 0.993 0.980 0.020
#> SRR1203834 1 0.1414 0.993 0.980 0.020
#> SRR1203835 1 0.1414 0.993 0.980 0.020
#> SRR1203836 1 0.1414 0.993 0.980 0.020
#> SRR1203837 1 0.1414 0.993 0.980 0.020
#> SRR1203838 1 0.1414 0.993 0.980 0.020
#> SRR1203839 1 0.1414 0.993 0.980 0.020
#> SRR1203842 1 0.1414 0.993 0.980 0.020
#> SRR1203843 1 0.1414 0.993 0.980 0.020
#> SRR1203845 2 0.0000 0.997 0.000 1.000
#> SRR1203844 2 0.0000 0.997 0.000 1.000
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201590 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201593 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201592 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201617 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201616 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201619 2 0.296 0.828 0.000 0.900 0.100
#> SRR1201618 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201620 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201621 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201623 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201622 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201624 3 0.164 0.693 0.016 0.020 0.964
#> SRR1201625 2 0.489 0.598 0.000 0.772 0.228
#> SRR1201626 3 0.506 0.299 0.244 0.000 0.756
#> SRR1201627 2 0.489 0.598 0.000 0.772 0.228
#> SRR1201628 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201629 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201630 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201631 2 0.263 0.834 0.000 0.916 0.084
#> SRR1201641 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201640 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201643 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201644 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201661 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201662 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201663 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201664 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201665 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201666 2 0.424 0.784 0.000 0.824 0.176
#> SRR1201667 2 0.424 0.784 0.000 0.824 0.176
#> SRR1201668 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201670 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201669 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201673 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201672 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201671 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201677 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201676 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201675 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201674 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201678 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201682 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201683 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201680 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201681 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201679 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201686 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201687 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201688 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201689 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201685 3 0.489 0.952 0.000 0.228 0.772
#> SRR1201692 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201691 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201690 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201696 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201695 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201694 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201693 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201697 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201698 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201700 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201708 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201707 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201706 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201702 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201705 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201701 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201704 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201703 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201716 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201715 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201717 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201712 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201709 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201711 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201714 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201713 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201710 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201719 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201718 3 0.525 0.929 0.000 0.264 0.736
#> SRR1201721 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201720 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201723 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201722 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201725 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201724 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201726 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201727 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201731 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201730 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201734 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201733 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201736 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201737 2 0.406 0.792 0.000 0.836 0.164
#> SRR1201739 2 0.429 0.781 0.000 0.820 0.180
#> SRR1201738 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201742 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201743 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201745 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201744 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201749 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201750 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201752 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201751 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201754 2 0.216 0.840 0.000 0.936 0.064
#> SRR1201753 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201758 3 0.710 0.640 0.216 0.080 0.704
#> SRR1201759 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201760 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201761 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201763 2 0.489 0.598 0.000 0.772 0.228
#> SRR1201762 3 0.321 0.629 0.084 0.012 0.904
#> SRR1201764 3 0.406 0.868 0.000 0.164 0.836
#> SRR1201766 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201768 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201769 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201767 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201770 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201771 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201772 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201773 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201774 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201786 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201784 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201785 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201778 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201779 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201781 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201780 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201783 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201782 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201798 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201797 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201796 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201795 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201799 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201794 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201793 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201792 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201791 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201807 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201808 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201803 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201804 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201805 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201806 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201801 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201802 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201800 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201814 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201816 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201815 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201819 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201820 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201813 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201817 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201818 2 0.484 0.749 0.000 0.776 0.224
#> SRR1201825 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201827 2 0.288 0.763 0.000 0.904 0.096
#> SRR1201828 2 0.288 0.763 0.000 0.904 0.096
#> SRR1201826 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201829 2 0.288 0.763 0.000 0.904 0.096
#> SRR1201830 2 0.288 0.763 0.000 0.904 0.096
#> SRR1201831 2 0.288 0.763 0.000 0.904 0.096
#> SRR1201832 2 0.288 0.763 0.000 0.904 0.096
#> SRR1201833 2 0.288 0.763 0.000 0.904 0.096
#> SRR1201865 2 0.304 0.826 0.000 0.896 0.104
#> SRR1201866 2 0.304 0.826 0.000 0.896 0.104
#> SRR1201867 2 0.304 0.826 0.000 0.896 0.104
#> SRR1201861 2 0.304 0.826 0.000 0.896 0.104
#> SRR1201862 2 0.304 0.826 0.000 0.896 0.104
#> SRR1201863 2 0.304 0.826 0.000 0.896 0.104
#> SRR1201859 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201864 2 0.304 0.826 0.000 0.896 0.104
#> SRR1201860 2 0.304 0.826 0.000 0.896 0.104
#> SRR1201873 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201871 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201872 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201980 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201979 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201982 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201981 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201998 2 0.000 0.856 0.000 1.000 0.000
#> SRR1201996 3 0.502 0.968 0.000 0.240 0.760
#> SRR1201997 2 0.000 0.856 0.000 1.000 0.000
#> SRR1202005 2 0.525 0.676 0.000 0.736 0.264
#> SRR1202006 2 0.000 0.856 0.000 1.000 0.000
#> SRR1202088 2 0.000 0.856 0.000 1.000 0.000
#> SRR1202087 3 0.506 0.962 0.000 0.244 0.756
#> SRR1202093 2 0.000 0.856 0.000 1.000 0.000
#> SRR1202092 3 0.502 0.968 0.000 0.240 0.760
#> SRR1202288 3 0.502 0.968 0.000 0.240 0.760
#> SRR1202289 2 0.484 0.749 0.000 0.776 0.224
#> SRR1202299 2 0.484 0.749 0.000 0.776 0.224
#> SRR1202298 3 0.502 0.968 0.000 0.240 0.760
#> SRR1202303 2 0.489 0.598 0.000 0.772 0.228
#> SRR1202372 2 0.484 0.749 0.000 0.776 0.224
#> SRR1202371 3 0.502 0.968 0.000 0.240 0.760
#> SRR1202563 3 0.502 0.968 0.000 0.240 0.760
#> SRR1202565 2 0.000 0.856 0.000 1.000 0.000
#> SRR1202564 2 0.000 0.856 0.000 1.000 0.000
#> SRR1202649 3 0.502 0.968 0.000 0.240 0.760
#> SRR1202650 3 0.502 0.968 0.000 0.240 0.760
#> SRR1202651 2 0.216 0.840 0.000 0.936 0.064
#> SRR1202843 1 0.000 1.000 1.000 0.000 0.000
#> SRR1202844 1 0.000 1.000 1.000 0.000 0.000
#> SRR1202845 3 0.502 0.968 0.000 0.240 0.760
#> SRR1202847 2 0.236 0.838 0.000 0.928 0.072
#> SRR1202846 2 0.207 0.842 0.000 0.940 0.060
#> SRR1202945 1 0.000 1.000 1.000 0.000 0.000
#> SRR1202949 1 0.000 1.000 1.000 0.000 0.000
#> SRR1202977 1 0.000 1.000 1.000 0.000 0.000
#> SRR1202978 1 0.000 1.000 1.000 0.000 0.000
#> SRR1202979 1 0.000 1.000 1.000 0.000 0.000
#> SRR1202990 1 0.000 1.000 1.000 0.000 0.000
#> SRR1202999 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203005 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203006 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203007 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203009 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203008 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203010 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203011 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203025 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203026 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203027 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203061 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203089 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203125 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203128 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203129 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203130 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203132 2 0.000 0.856 0.000 1.000 0.000
#> SRR1203131 3 0.502 0.968 0.000 0.240 0.760
#> SRR1203133 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203138 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203760 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203761 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203770 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203771 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203772 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203773 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203774 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203775 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203800 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203801 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203802 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203803 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203804 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203805 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203806 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203807 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203808 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203811 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203812 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203813 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203814 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203815 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203816 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203817 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203818 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203819 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203822 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203823 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203824 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203825 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203826 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203827 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203828 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203829 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203830 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203831 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203832 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203833 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203834 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203835 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203836 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203837 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203838 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203839 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203842 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203843 1 0.000 1.000 1.000 0.000 0.000
#> SRR1203845 2 0.000 0.856 0.000 1.000 0.000
#> SRR1203844 3 0.502 0.968 0.000 0.240 0.760
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.5105 0.726 0.000 0.564 0.432 0.004
#> SRR1201590 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201593 2 0.5105 0.726 0.000 0.564 0.432 0.004
#> SRR1201592 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201617 2 0.5105 0.726 0.000 0.564 0.432 0.004
#> SRR1201616 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201619 2 0.4776 0.744 0.000 0.624 0.376 0.000
#> SRR1201618 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201620 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201621 2 0.4933 0.727 0.000 0.568 0.432 0.000
#> SRR1201623 2 0.3157 0.753 0.000 0.852 0.144 0.004
#> SRR1201622 3 0.5430 0.898 0.000 0.036 0.664 0.300
#> SRR1201624 4 0.3975 0.910 0.000 0.000 0.240 0.760
#> SRR1201625 2 0.4907 0.153 0.000 0.580 0.000 0.420
#> SRR1201626 4 0.4764 0.953 0.032 0.000 0.220 0.748
#> SRR1201627 2 0.4907 0.153 0.000 0.580 0.000 0.420
#> SRR1201628 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201629 2 0.0592 0.726 0.000 0.984 0.000 0.016
#> SRR1201630 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201631 2 0.4761 0.745 0.000 0.628 0.372 0.000
#> SRR1201641 2 0.4134 0.756 0.000 0.740 0.260 0.000
#> SRR1201640 3 0.5083 0.891 0.000 0.036 0.716 0.248
#> SRR1201643 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201644 2 0.3569 0.757 0.000 0.804 0.196 0.000
#> SRR1201661 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201662 2 0.4304 0.757 0.000 0.716 0.284 0.000
#> SRR1201663 3 0.5453 0.895 0.000 0.036 0.660 0.304
#> SRR1201664 2 0.1118 0.718 0.000 0.964 0.000 0.036
#> SRR1201665 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201666 2 0.5004 0.739 0.000 0.604 0.392 0.004
#> SRR1201667 2 0.5004 0.739 0.000 0.604 0.392 0.004
#> SRR1201668 3 0.5453 0.895 0.000 0.036 0.660 0.304
#> SRR1201670 2 0.1211 0.718 0.000 0.960 0.000 0.040
#> SRR1201669 2 0.1211 0.718 0.000 0.960 0.000 0.040
#> SRR1201673 2 0.0000 0.731 0.000 1.000 0.000 0.000
#> SRR1201672 2 0.0000 0.731 0.000 1.000 0.000 0.000
#> SRR1201671 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201677 2 0.0000 0.731 0.000 1.000 0.000 0.000
#> SRR1201676 2 0.0000 0.731 0.000 1.000 0.000 0.000
#> SRR1201675 2 0.0000 0.731 0.000 1.000 0.000 0.000
#> SRR1201674 2 0.0000 0.731 0.000 1.000 0.000 0.000
#> SRR1201678 2 0.0000 0.731 0.000 1.000 0.000 0.000
#> SRR1201682 2 0.4222 0.755 0.000 0.728 0.272 0.000
#> SRR1201683 2 0.4222 0.755 0.000 0.728 0.272 0.000
#> SRR1201680 2 0.4222 0.755 0.000 0.728 0.272 0.000
#> SRR1201681 2 0.4222 0.755 0.000 0.728 0.272 0.000
#> SRR1201679 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201686 2 0.1211 0.718 0.000 0.960 0.000 0.040
#> SRR1201687 2 0.1211 0.718 0.000 0.960 0.000 0.040
#> SRR1201688 2 0.1211 0.718 0.000 0.960 0.000 0.040
#> SRR1201689 2 0.1211 0.718 0.000 0.960 0.000 0.040
#> SRR1201685 3 0.5376 0.537 0.000 0.016 0.588 0.396
#> SRR1201692 2 0.0592 0.726 0.000 0.984 0.000 0.016
#> SRR1201691 2 0.0592 0.726 0.000 0.984 0.000 0.016
#> SRR1201690 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201696 2 0.0592 0.726 0.000 0.984 0.000 0.016
#> SRR1201695 2 0.0592 0.726 0.000 0.984 0.000 0.016
#> SRR1201694 2 0.0592 0.726 0.000 0.984 0.000 0.016
#> SRR1201693 2 0.0592 0.726 0.000 0.984 0.000 0.016
#> SRR1201697 2 0.0592 0.726 0.000 0.984 0.000 0.016
#> SRR1201698 2 0.0592 0.726 0.000 0.984 0.000 0.016
#> SRR1201700 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201708 2 0.0817 0.722 0.000 0.976 0.000 0.024
#> SRR1201707 2 0.0817 0.722 0.000 0.976 0.000 0.024
#> SRR1201706 2 0.0817 0.722 0.000 0.976 0.000 0.024
#> SRR1201702 2 0.0817 0.722 0.000 0.976 0.000 0.024
#> SRR1201705 2 0.0817 0.722 0.000 0.976 0.000 0.024
#> SRR1201701 2 0.0817 0.722 0.000 0.976 0.000 0.024
#> SRR1201704 2 0.0817 0.722 0.000 0.976 0.000 0.024
#> SRR1201703 2 0.0817 0.722 0.000 0.976 0.000 0.024
#> SRR1201716 2 0.0921 0.722 0.000 0.972 0.000 0.028
#> SRR1201715 2 0.0921 0.722 0.000 0.972 0.000 0.028
#> SRR1201717 2 0.0921 0.722 0.000 0.972 0.000 0.028
#> SRR1201712 2 0.0921 0.722 0.000 0.972 0.000 0.028
#> SRR1201709 3 0.5282 0.929 0.000 0.036 0.688 0.276
#> SRR1201711 2 0.0921 0.722 0.000 0.972 0.000 0.028
#> SRR1201714 2 0.0921 0.722 0.000 0.972 0.000 0.028
#> SRR1201713 2 0.0921 0.722 0.000 0.972 0.000 0.028
#> SRR1201710 2 0.0921 0.722 0.000 0.972 0.000 0.028
#> SRR1201719 2 0.2408 0.749 0.000 0.896 0.104 0.000
#> SRR1201718 3 0.4820 0.648 0.000 0.060 0.772 0.168
#> SRR1201721 2 0.0817 0.722 0.000 0.976 0.000 0.024
#> SRR1201720 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201723 2 0.1118 0.718 0.000 0.964 0.000 0.036
#> SRR1201722 3 0.5453 0.895 0.000 0.036 0.660 0.304
#> SRR1201725 2 0.0657 0.729 0.000 0.984 0.004 0.012
#> SRR1201724 3 0.4818 0.824 0.000 0.036 0.748 0.216
#> SRR1201726 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201727 2 0.0817 0.722 0.000 0.976 0.000 0.024
#> SRR1201731 2 0.0817 0.722 0.000 0.976 0.000 0.024
#> SRR1201730 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201734 2 0.5105 0.726 0.000 0.564 0.432 0.004
#> SRR1201733 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201736 3 0.5430 0.898 0.000 0.036 0.664 0.300
#> SRR1201737 2 0.4991 0.740 0.000 0.608 0.388 0.004
#> SRR1201739 2 0.5016 0.738 0.000 0.600 0.396 0.004
#> SRR1201738 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201742 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201743 2 0.4382 0.754 0.000 0.704 0.296 0.000
#> SRR1201745 2 0.4941 0.725 0.000 0.564 0.436 0.000
#> SRR1201744 3 0.5453 0.895 0.000 0.036 0.660 0.304
#> SRR1201749 3 0.5334 0.920 0.000 0.036 0.680 0.284
#> SRR1201750 2 0.4933 0.727 0.000 0.568 0.432 0.000
#> SRR1201752 2 0.0000 0.731 0.000 1.000 0.000 0.000
#> SRR1201751 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201754 2 0.4746 0.745 0.000 0.632 0.368 0.000
#> SRR1201753 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201758 3 0.5814 0.292 0.024 0.004 0.544 0.428
#> SRR1201759 2 0.1118 0.718 0.000 0.964 0.000 0.036
#> SRR1201760 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201761 2 0.0592 0.726 0.000 0.984 0.000 0.016
#> SRR1201763 2 0.4907 0.153 0.000 0.580 0.000 0.420
#> SRR1201762 4 0.4764 0.953 0.032 0.000 0.220 0.748
#> SRR1201764 3 0.5285 0.246 0.000 0.008 0.524 0.468
#> SRR1201766 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201768 2 0.5112 0.723 0.000 0.560 0.436 0.004
#> SRR1201769 2 0.5112 0.723 0.000 0.560 0.436 0.004
#> SRR1201767 2 0.5112 0.723 0.000 0.560 0.436 0.004
#> SRR1201770 2 0.5112 0.723 0.000 0.560 0.436 0.004
#> SRR1201771 2 0.5112 0.723 0.000 0.560 0.436 0.004
#> SRR1201772 2 0.5112 0.723 0.000 0.560 0.436 0.004
#> SRR1201773 2 0.5112 0.723 0.000 0.560 0.436 0.004
#> SRR1201774 2 0.5112 0.723 0.000 0.560 0.436 0.004
#> SRR1201786 2 0.5112 0.723 0.000 0.560 0.436 0.004
#> SRR1201784 2 0.5112 0.723 0.000 0.560 0.436 0.004
#> SRR1201785 2 0.5112 0.723 0.000 0.560 0.436 0.004
#> SRR1201778 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201779 2 0.5112 0.723 0.000 0.560 0.436 0.004
#> SRR1201781 2 0.5112 0.723 0.000 0.560 0.436 0.004
#> SRR1201780 2 0.5112 0.723 0.000 0.560 0.436 0.004
#> SRR1201783 2 0.5112 0.723 0.000 0.560 0.436 0.004
#> SRR1201782 2 0.5112 0.723 0.000 0.560 0.436 0.004
#> SRR1201798 2 0.5105 0.726 0.000 0.564 0.432 0.004
#> SRR1201797 2 0.5105 0.726 0.000 0.564 0.432 0.004
#> SRR1201796 2 0.5105 0.726 0.000 0.564 0.432 0.004
#> SRR1201795 2 0.5105 0.726 0.000 0.564 0.432 0.004
#> SRR1201799 2 0.5105 0.726 0.000 0.564 0.432 0.004
#> SRR1201794 2 0.5105 0.726 0.000 0.564 0.432 0.004
#> SRR1201793 2 0.5105 0.726 0.000 0.564 0.432 0.004
#> SRR1201792 2 0.5105 0.726 0.000 0.564 0.432 0.004
#> SRR1201791 3 0.4781 0.815 0.000 0.036 0.752 0.212
#> SRR1201807 2 0.4933 0.727 0.000 0.568 0.432 0.000
#> SRR1201808 2 0.4933 0.727 0.000 0.568 0.432 0.000
#> SRR1201803 2 0.4933 0.727 0.000 0.568 0.432 0.000
#> SRR1201804 2 0.4933 0.727 0.000 0.568 0.432 0.000
#> SRR1201805 2 0.4933 0.727 0.000 0.568 0.432 0.000
#> SRR1201806 2 0.4933 0.727 0.000 0.568 0.432 0.000
#> SRR1201801 2 0.4933 0.727 0.000 0.568 0.432 0.000
#> SRR1201802 2 0.4933 0.727 0.000 0.568 0.432 0.000
#> SRR1201800 3 0.5228 0.927 0.000 0.036 0.696 0.268
#> SRR1201814 2 0.4933 0.727 0.000 0.568 0.432 0.000
#> SRR1201816 2 0.4933 0.727 0.000 0.568 0.432 0.000
#> SRR1201815 2 0.4933 0.727 0.000 0.568 0.432 0.000
#> SRR1201819 2 0.4933 0.727 0.000 0.568 0.432 0.000
#> SRR1201820 2 0.4933 0.727 0.000 0.568 0.432 0.000
#> SRR1201813 3 0.3999 0.641 0.000 0.036 0.824 0.140
#> SRR1201817 2 0.4933 0.727 0.000 0.568 0.432 0.000
#> SRR1201818 2 0.4933 0.727 0.000 0.568 0.432 0.000
#> SRR1201825 3 0.5453 0.895 0.000 0.036 0.660 0.304
#> SRR1201827 2 0.3444 0.575 0.000 0.816 0.000 0.184
#> SRR1201828 2 0.3444 0.575 0.000 0.816 0.000 0.184
#> SRR1201826 3 0.5453 0.895 0.000 0.036 0.660 0.304
#> SRR1201829 2 0.3444 0.575 0.000 0.816 0.000 0.184
#> SRR1201830 2 0.3444 0.575 0.000 0.816 0.000 0.184
#> SRR1201831 2 0.3444 0.575 0.000 0.816 0.000 0.184
#> SRR1201832 2 0.3444 0.575 0.000 0.816 0.000 0.184
#> SRR1201833 2 0.3444 0.575 0.000 0.816 0.000 0.184
#> SRR1201865 2 0.4262 0.755 0.000 0.756 0.236 0.008
#> SRR1201866 2 0.4262 0.755 0.000 0.756 0.236 0.008
#> SRR1201867 2 0.4262 0.755 0.000 0.756 0.236 0.008
#> SRR1201861 2 0.4262 0.755 0.000 0.756 0.236 0.008
#> SRR1201862 2 0.4262 0.755 0.000 0.756 0.236 0.008
#> SRR1201863 2 0.4262 0.755 0.000 0.756 0.236 0.008
#> SRR1201859 3 0.5453 0.895 0.000 0.036 0.660 0.304
#> SRR1201864 2 0.4262 0.755 0.000 0.756 0.236 0.008
#> SRR1201860 2 0.4262 0.755 0.000 0.756 0.236 0.008
#> SRR1201873 2 0.0921 0.723 0.000 0.972 0.000 0.028
#> SRR1201871 3 0.5453 0.895 0.000 0.036 0.660 0.304
#> SRR1201872 2 0.0921 0.723 0.000 0.972 0.000 0.028
#> SRR1201980 2 0.0592 0.726 0.000 0.984 0.000 0.016
#> SRR1201979 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201982 2 0.0592 0.726 0.000 0.984 0.000 0.016
#> SRR1201981 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1201998 2 0.2216 0.747 0.000 0.908 0.092 0.000
#> SRR1201996 3 0.5200 0.921 0.000 0.036 0.700 0.264
#> SRR1201997 2 0.3123 0.755 0.000 0.844 0.156 0.000
#> SRR1202005 2 0.5143 0.699 0.000 0.540 0.456 0.004
#> SRR1202006 2 0.4477 0.754 0.000 0.688 0.312 0.000
#> SRR1202088 2 0.3636 0.756 0.000 0.820 0.172 0.008
#> SRR1202087 3 0.5663 0.855 0.000 0.060 0.676 0.264
#> SRR1202093 2 0.4720 0.752 0.000 0.672 0.324 0.004
#> SRR1202092 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1202288 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1202289 2 0.5105 0.726 0.000 0.564 0.432 0.004
#> SRR1202299 2 0.4933 0.727 0.000 0.568 0.432 0.000
#> SRR1202298 3 0.3948 0.631 0.000 0.036 0.828 0.136
#> SRR1202303 2 0.4907 0.153 0.000 0.580 0.000 0.420
#> SRR1202372 2 0.4933 0.727 0.000 0.568 0.432 0.000
#> SRR1202371 3 0.5282 0.929 0.000 0.036 0.688 0.276
#> SRR1202563 3 0.5453 0.895 0.000 0.036 0.660 0.304
#> SRR1202565 2 0.4193 0.756 0.000 0.732 0.268 0.000
#> SRR1202564 2 0.4193 0.756 0.000 0.732 0.268 0.000
#> SRR1202649 3 0.5453 0.895 0.000 0.036 0.660 0.304
#> SRR1202650 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1202651 2 0.4746 0.745 0.000 0.632 0.368 0.000
#> SRR1202843 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1202845 3 0.5256 0.933 0.000 0.036 0.692 0.272
#> SRR1202847 2 0.4643 0.751 0.000 0.656 0.344 0.000
#> SRR1202846 2 0.4624 0.752 0.000 0.660 0.340 0.000
#> SRR1202945 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1202949 1 0.1938 0.956 0.936 0.000 0.012 0.052
#> SRR1202977 1 0.1938 0.956 0.936 0.000 0.012 0.052
#> SRR1202978 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1202990 1 0.1938 0.956 0.936 0.000 0.012 0.052
#> SRR1202999 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203009 1 0.1938 0.956 0.936 0.000 0.012 0.052
#> SRR1203008 1 0.1938 0.956 0.936 0.000 0.012 0.052
#> SRR1203010 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203025 1 0.1489 0.966 0.952 0.000 0.004 0.044
#> SRR1203026 1 0.1398 0.968 0.956 0.000 0.004 0.040
#> SRR1203027 1 0.0779 0.979 0.980 0.000 0.004 0.016
#> SRR1203061 1 0.0895 0.977 0.976 0.000 0.004 0.020
#> SRR1203089 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203132 2 0.0592 0.726 0.000 0.984 0.000 0.016
#> SRR1203131 3 0.5334 0.920 0.000 0.036 0.680 0.284
#> SRR1203133 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203771 1 0.1938 0.956 0.936 0.000 0.012 0.052
#> SRR1203772 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203774 1 0.0188 0.985 0.996 0.000 0.000 0.004
#> SRR1203775 1 0.0779 0.979 0.980 0.000 0.004 0.016
#> SRR1203800 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203804 1 0.1938 0.956 0.936 0.000 0.012 0.052
#> SRR1203805 1 0.1938 0.956 0.936 0.000 0.012 0.052
#> SRR1203806 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203807 1 0.0895 0.977 0.976 0.000 0.004 0.020
#> SRR1203808 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203812 1 0.1938 0.956 0.936 0.000 0.012 0.052
#> SRR1203813 1 0.1489 0.966 0.952 0.000 0.004 0.044
#> SRR1203814 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203823 1 0.0469 0.982 0.988 0.000 0.000 0.012
#> SRR1203824 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203827 1 0.1938 0.956 0.936 0.000 0.012 0.052
#> SRR1203828 1 0.1489 0.966 0.952 0.000 0.004 0.044
#> SRR1203829 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203831 1 0.0524 0.982 0.988 0.000 0.004 0.008
#> SRR1203832 1 0.1938 0.956 0.936 0.000 0.012 0.052
#> SRR1203833 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203834 1 0.1305 0.970 0.960 0.000 0.004 0.036
#> SRR1203835 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203836 1 0.1489 0.966 0.952 0.000 0.004 0.044
#> SRR1203837 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203842 1 0.1938 0.956 0.936 0.000 0.012 0.052
#> SRR1203843 1 0.0000 0.986 1.000 0.000 0.000 0.000
#> SRR1203845 2 0.4543 0.752 0.000 0.676 0.324 0.000
#> SRR1203844 3 0.4956 0.859 0.000 0.036 0.732 0.232
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.1469 0.8478 0.000 0.948 0.000 0.016 0.036
#> SRR1201590 5 0.1168 0.9489 0.000 0.032 0.000 0.008 0.960
#> SRR1201593 2 0.1469 0.8478 0.000 0.948 0.000 0.016 0.036
#> SRR1201592 5 0.1281 0.9494 0.000 0.032 0.000 0.012 0.956
#> SRR1201617 2 0.1469 0.8478 0.000 0.948 0.000 0.016 0.036
#> SRR1201616 5 0.1168 0.9489 0.000 0.032 0.000 0.008 0.960
#> SRR1201619 2 0.0324 0.8288 0.000 0.992 0.004 0.000 0.004
#> SRR1201618 5 0.1168 0.9489 0.000 0.032 0.000 0.008 0.960
#> SRR1201620 5 0.1168 0.9489 0.000 0.032 0.000 0.008 0.960
#> SRR1201621 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1201623 2 0.4517 -0.3489 0.000 0.600 0.388 0.012 0.000
#> SRR1201622 5 0.1195 0.9469 0.000 0.028 0.000 0.012 0.960
#> SRR1201624 4 0.5990 0.9663 0.000 0.000 0.152 0.568 0.280
#> SRR1201625 3 0.4490 -0.1329 0.000 0.052 0.724 0.224 0.000
#> SRR1201626 4 0.6292 0.9836 0.012 0.000 0.156 0.572 0.260
#> SRR1201627 3 0.4490 -0.1329 0.000 0.052 0.724 0.224 0.000
#> SRR1201628 5 0.1281 0.9483 0.000 0.032 0.000 0.012 0.956
#> SRR1201629 3 0.4702 0.8318 0.000 0.432 0.552 0.016 0.000
#> SRR1201630 5 0.1281 0.9483 0.000 0.032 0.000 0.012 0.956
#> SRR1201631 2 0.2448 0.7267 0.000 0.892 0.088 0.020 0.000
#> SRR1201641 2 0.3821 0.4505 0.000 0.764 0.216 0.020 0.000
#> SRR1201640 5 0.2067 0.9217 0.000 0.048 0.000 0.032 0.920
#> SRR1201643 5 0.1281 0.9483 0.000 0.032 0.000 0.012 0.956
#> SRR1201644 2 0.4419 0.0432 0.000 0.668 0.312 0.020 0.000
#> SRR1201661 5 0.1568 0.9435 0.000 0.036 0.000 0.020 0.944
#> SRR1201662 2 0.3278 0.6026 0.000 0.824 0.156 0.020 0.000
#> SRR1201663 5 0.1588 0.9435 0.000 0.028 0.008 0.016 0.948
#> SRR1201664 3 0.4557 0.8585 0.000 0.404 0.584 0.012 0.000
#> SRR1201665 5 0.1168 0.9489 0.000 0.032 0.000 0.008 0.960
#> SRR1201666 2 0.0912 0.8361 0.000 0.972 0.000 0.016 0.012
#> SRR1201667 2 0.0912 0.8361 0.000 0.972 0.000 0.016 0.012
#> SRR1201668 5 0.1596 0.9422 0.000 0.028 0.012 0.012 0.948
#> SRR1201670 3 0.4473 0.8560 0.000 0.412 0.580 0.008 0.000
#> SRR1201669 3 0.4473 0.8560 0.000 0.412 0.580 0.008 0.000
#> SRR1201673 3 0.4302 0.7647 0.000 0.480 0.520 0.000 0.000
#> SRR1201672 3 0.4302 0.7647 0.000 0.480 0.520 0.000 0.000
#> SRR1201671 5 0.1168 0.9489 0.000 0.032 0.000 0.008 0.960
#> SRR1201677 3 0.4302 0.7647 0.000 0.480 0.520 0.000 0.000
#> SRR1201676 3 0.4302 0.7647 0.000 0.480 0.520 0.000 0.000
#> SRR1201675 3 0.4302 0.7647 0.000 0.480 0.520 0.000 0.000
#> SRR1201674 3 0.4302 0.7647 0.000 0.480 0.520 0.000 0.000
#> SRR1201678 3 0.4302 0.7647 0.000 0.480 0.520 0.000 0.000
#> SRR1201682 2 0.1124 0.7895 0.000 0.960 0.036 0.004 0.000
#> SRR1201683 2 0.1124 0.7895 0.000 0.960 0.036 0.004 0.000
#> SRR1201680 2 0.1124 0.7895 0.000 0.960 0.036 0.004 0.000
#> SRR1201681 2 0.1124 0.7895 0.000 0.960 0.036 0.004 0.000
#> SRR1201679 5 0.1168 0.9489 0.000 0.032 0.000 0.008 0.960
#> SRR1201686 3 0.4547 0.8514 0.000 0.400 0.588 0.012 0.000
#> SRR1201687 3 0.4547 0.8514 0.000 0.400 0.588 0.012 0.000
#> SRR1201688 3 0.4547 0.8514 0.000 0.400 0.588 0.012 0.000
#> SRR1201689 3 0.4547 0.8514 0.000 0.400 0.588 0.012 0.000
#> SRR1201685 5 0.1503 0.8750 0.000 0.008 0.020 0.020 0.952
#> SRR1201692 3 0.4375 0.8524 0.000 0.420 0.576 0.004 0.000
#> SRR1201691 3 0.4375 0.8524 0.000 0.420 0.576 0.004 0.000
#> SRR1201690 5 0.1281 0.9483 0.000 0.032 0.000 0.012 0.956
#> SRR1201696 3 0.4375 0.8524 0.000 0.420 0.576 0.004 0.000
#> SRR1201695 3 0.4375 0.8524 0.000 0.420 0.576 0.004 0.000
#> SRR1201694 3 0.4375 0.8524 0.000 0.420 0.576 0.004 0.000
#> SRR1201693 3 0.4375 0.8524 0.000 0.420 0.576 0.004 0.000
#> SRR1201697 3 0.4375 0.8524 0.000 0.420 0.576 0.004 0.000
#> SRR1201698 3 0.4375 0.8524 0.000 0.420 0.576 0.004 0.000
#> SRR1201700 5 0.1281 0.9483 0.000 0.032 0.000 0.012 0.956
#> SRR1201708 3 0.4192 0.8613 0.000 0.404 0.596 0.000 0.000
#> SRR1201707 3 0.4192 0.8613 0.000 0.404 0.596 0.000 0.000
#> SRR1201706 3 0.4192 0.8613 0.000 0.404 0.596 0.000 0.000
#> SRR1201702 3 0.4192 0.8613 0.000 0.404 0.596 0.000 0.000
#> SRR1201705 3 0.4192 0.8613 0.000 0.404 0.596 0.000 0.000
#> SRR1201701 3 0.4192 0.8613 0.000 0.404 0.596 0.000 0.000
#> SRR1201704 3 0.4192 0.8613 0.000 0.404 0.596 0.000 0.000
#> SRR1201703 3 0.4192 0.8613 0.000 0.404 0.596 0.000 0.000
#> SRR1201716 3 0.4192 0.8613 0.000 0.404 0.596 0.000 0.000
#> SRR1201715 3 0.4192 0.8613 0.000 0.404 0.596 0.000 0.000
#> SRR1201717 3 0.4192 0.8613 0.000 0.404 0.596 0.000 0.000
#> SRR1201712 3 0.4192 0.8613 0.000 0.404 0.596 0.000 0.000
#> SRR1201709 5 0.1386 0.9476 0.000 0.032 0.000 0.016 0.952
#> SRR1201711 3 0.4192 0.8613 0.000 0.404 0.596 0.000 0.000
#> SRR1201714 3 0.4192 0.8613 0.000 0.404 0.596 0.000 0.000
#> SRR1201713 3 0.4192 0.8613 0.000 0.404 0.596 0.000 0.000
#> SRR1201710 3 0.4192 0.8613 0.000 0.404 0.596 0.000 0.000
#> SRR1201719 2 0.4675 -0.3289 0.000 0.600 0.380 0.020 0.000
#> SRR1201718 5 0.3229 0.7835 0.000 0.128 0.000 0.032 0.840
#> SRR1201721 3 0.4341 0.8603 0.000 0.404 0.592 0.004 0.000
#> SRR1201720 5 0.1281 0.9483 0.000 0.032 0.000 0.012 0.956
#> SRR1201723 3 0.4192 0.8613 0.000 0.404 0.596 0.000 0.000
#> SRR1201722 5 0.1588 0.9435 0.000 0.028 0.008 0.016 0.948
#> SRR1201725 3 0.4781 0.8333 0.000 0.428 0.552 0.020 0.000
#> SRR1201724 5 0.2344 0.9004 0.000 0.064 0.000 0.032 0.904
#> SRR1201726 5 0.1281 0.9483 0.000 0.032 0.000 0.012 0.956
#> SRR1201727 3 0.4192 0.8613 0.000 0.404 0.596 0.000 0.000
#> SRR1201731 3 0.4192 0.8613 0.000 0.404 0.596 0.000 0.000
#> SRR1201730 5 0.1836 0.9340 0.000 0.036 0.000 0.032 0.932
#> SRR1201734 2 0.1469 0.8478 0.000 0.948 0.000 0.016 0.036
#> SRR1201733 5 0.1168 0.9489 0.000 0.032 0.000 0.008 0.960
#> SRR1201736 5 0.1243 0.9469 0.000 0.028 0.004 0.008 0.960
#> SRR1201737 2 0.0912 0.8361 0.000 0.972 0.000 0.016 0.012
#> SRR1201739 2 0.0912 0.8361 0.000 0.972 0.000 0.016 0.012
#> SRR1201738 5 0.1386 0.9462 0.000 0.032 0.000 0.016 0.952
#> SRR1201742 5 0.1168 0.9489 0.000 0.032 0.000 0.008 0.960
#> SRR1201743 2 0.1124 0.7895 0.000 0.960 0.036 0.004 0.000
#> SRR1201745 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1201744 5 0.1483 0.9439 0.000 0.028 0.012 0.008 0.952
#> SRR1201749 5 0.1243 0.9469 0.000 0.028 0.004 0.008 0.960
#> SRR1201750 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1201752 3 0.4420 0.8152 0.000 0.448 0.548 0.004 0.000
#> SRR1201751 5 0.1281 0.9483 0.000 0.032 0.000 0.012 0.956
#> SRR1201754 2 0.1195 0.8022 0.000 0.960 0.028 0.012 0.000
#> SRR1201753 5 0.1281 0.9494 0.000 0.032 0.000 0.012 0.956
#> SRR1201758 5 0.3771 0.6068 0.004 0.000 0.036 0.156 0.804
#> SRR1201759 3 0.4537 0.8533 0.000 0.396 0.592 0.012 0.000
#> SRR1201760 5 0.1281 0.9483 0.000 0.032 0.000 0.012 0.956
#> SRR1201761 3 0.4375 0.8524 0.000 0.420 0.576 0.004 0.000
#> SRR1201763 3 0.4490 -0.1329 0.000 0.052 0.724 0.224 0.000
#> SRR1201762 4 0.6292 0.9836 0.012 0.000 0.156 0.572 0.260
#> SRR1201764 5 0.4073 0.4502 0.000 0.000 0.032 0.216 0.752
#> SRR1201766 5 0.1386 0.9462 0.000 0.032 0.000 0.016 0.952
#> SRR1201768 2 0.1469 0.8471 0.000 0.948 0.000 0.016 0.036
#> SRR1201769 2 0.1469 0.8471 0.000 0.948 0.000 0.016 0.036
#> SRR1201767 2 0.1469 0.8471 0.000 0.948 0.000 0.016 0.036
#> SRR1201770 2 0.1469 0.8471 0.000 0.948 0.000 0.016 0.036
#> SRR1201771 2 0.1469 0.8471 0.000 0.948 0.000 0.016 0.036
#> SRR1201772 2 0.1469 0.8471 0.000 0.948 0.000 0.016 0.036
#> SRR1201773 2 0.1469 0.8471 0.000 0.948 0.000 0.016 0.036
#> SRR1201774 2 0.1469 0.8471 0.000 0.948 0.000 0.016 0.036
#> SRR1201786 2 0.1469 0.8471 0.000 0.948 0.000 0.016 0.036
#> SRR1201784 2 0.1469 0.8471 0.000 0.948 0.000 0.016 0.036
#> SRR1201785 2 0.1469 0.8471 0.000 0.948 0.000 0.016 0.036
#> SRR1201778 5 0.1329 0.9484 0.000 0.032 0.004 0.008 0.956
#> SRR1201779 2 0.1469 0.8471 0.000 0.948 0.000 0.016 0.036
#> SRR1201781 2 0.1469 0.8471 0.000 0.948 0.000 0.016 0.036
#> SRR1201780 2 0.1469 0.8471 0.000 0.948 0.000 0.016 0.036
#> SRR1201783 2 0.1469 0.8471 0.000 0.948 0.000 0.016 0.036
#> SRR1201782 2 0.1469 0.8471 0.000 0.948 0.000 0.016 0.036
#> SRR1201798 2 0.1469 0.8478 0.000 0.948 0.000 0.016 0.036
#> SRR1201797 2 0.1469 0.8478 0.000 0.948 0.000 0.016 0.036
#> SRR1201796 2 0.1469 0.8478 0.000 0.948 0.000 0.016 0.036
#> SRR1201795 2 0.1469 0.8478 0.000 0.948 0.000 0.016 0.036
#> SRR1201799 2 0.1469 0.8478 0.000 0.948 0.000 0.016 0.036
#> SRR1201794 2 0.1469 0.8478 0.000 0.948 0.000 0.016 0.036
#> SRR1201793 2 0.1469 0.8478 0.000 0.948 0.000 0.016 0.036
#> SRR1201792 2 0.1469 0.8478 0.000 0.948 0.000 0.016 0.036
#> SRR1201791 5 0.2915 0.8113 0.000 0.116 0.000 0.024 0.860
#> SRR1201807 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1201808 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1201803 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1201804 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1201805 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1201806 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1201801 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1201802 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1201800 5 0.1408 0.9430 0.000 0.044 0.000 0.008 0.948
#> SRR1201814 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1201816 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1201815 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1201819 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1201820 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1201813 5 0.3081 0.7521 0.000 0.156 0.000 0.012 0.832
#> SRR1201817 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1201818 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1201825 5 0.1195 0.9451 0.000 0.028 0.012 0.000 0.960
#> SRR1201827 3 0.5287 0.6421 0.000 0.260 0.648 0.092 0.000
#> SRR1201828 3 0.5287 0.6421 0.000 0.260 0.648 0.092 0.000
#> SRR1201826 5 0.1596 0.9421 0.000 0.028 0.012 0.012 0.948
#> SRR1201829 3 0.5287 0.6421 0.000 0.260 0.648 0.092 0.000
#> SRR1201830 3 0.5287 0.6421 0.000 0.260 0.648 0.092 0.000
#> SRR1201831 3 0.5287 0.6421 0.000 0.260 0.648 0.092 0.000
#> SRR1201832 3 0.5287 0.6421 0.000 0.260 0.648 0.092 0.000
#> SRR1201833 3 0.5287 0.6421 0.000 0.260 0.648 0.092 0.000
#> SRR1201865 2 0.5177 0.2866 0.000 0.676 0.260 0.024 0.040
#> SRR1201866 2 0.5177 0.2866 0.000 0.676 0.260 0.024 0.040
#> SRR1201867 2 0.5177 0.2866 0.000 0.676 0.260 0.024 0.040
#> SRR1201861 2 0.5177 0.2866 0.000 0.676 0.260 0.024 0.040
#> SRR1201862 2 0.5177 0.2866 0.000 0.676 0.260 0.024 0.040
#> SRR1201863 2 0.5177 0.2866 0.000 0.676 0.260 0.024 0.040
#> SRR1201859 5 0.1356 0.9448 0.000 0.028 0.012 0.004 0.956
#> SRR1201864 2 0.5177 0.2866 0.000 0.676 0.260 0.024 0.040
#> SRR1201860 2 0.5177 0.2866 0.000 0.676 0.260 0.024 0.040
#> SRR1201873 3 0.4590 0.8502 0.000 0.420 0.568 0.012 0.000
#> SRR1201871 5 0.1483 0.9451 0.000 0.028 0.012 0.008 0.952
#> SRR1201872 3 0.4590 0.8502 0.000 0.420 0.568 0.012 0.000
#> SRR1201980 3 0.4375 0.8524 0.000 0.420 0.576 0.004 0.000
#> SRR1201979 5 0.1281 0.9483 0.000 0.032 0.000 0.012 0.956
#> SRR1201982 3 0.4767 0.8429 0.000 0.420 0.560 0.020 0.000
#> SRR1201981 5 0.1281 0.9483 0.000 0.032 0.000 0.012 0.956
#> SRR1201998 2 0.4697 -0.3642 0.000 0.592 0.388 0.020 0.000
#> SRR1201996 5 0.1915 0.9304 0.000 0.040 0.000 0.032 0.928
#> SRR1201997 2 0.4473 -0.0288 0.000 0.656 0.324 0.020 0.000
#> SRR1202005 2 0.3850 0.7256 0.000 0.824 0.032 0.028 0.116
#> SRR1202006 2 0.3106 0.6350 0.000 0.840 0.140 0.020 0.000
#> SRR1202088 2 0.4040 0.2543 0.000 0.724 0.260 0.016 0.000
#> SRR1202087 5 0.2848 0.8248 0.000 0.104 0.000 0.028 0.868
#> SRR1202093 2 0.1117 0.8056 0.000 0.964 0.020 0.016 0.000
#> SRR1202092 5 0.1281 0.9481 0.000 0.032 0.000 0.012 0.956
#> SRR1202288 5 0.1329 0.9484 0.000 0.032 0.004 0.008 0.956
#> SRR1202289 2 0.1469 0.8478 0.000 0.948 0.000 0.016 0.036
#> SRR1202299 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1202298 5 0.3750 0.5785 0.000 0.232 0.000 0.012 0.756
#> SRR1202303 3 0.4490 -0.1329 0.000 0.052 0.724 0.224 0.000
#> SRR1202372 2 0.1124 0.8485 0.000 0.960 0.004 0.000 0.036
#> SRR1202371 5 0.1243 0.9469 0.000 0.028 0.004 0.008 0.960
#> SRR1202563 5 0.1195 0.9451 0.000 0.028 0.012 0.000 0.960
#> SRR1202565 2 0.3427 0.5296 0.000 0.796 0.192 0.012 0.000
#> SRR1202564 2 0.3427 0.5296 0.000 0.796 0.192 0.012 0.000
#> SRR1202649 5 0.1195 0.9451 0.000 0.028 0.012 0.000 0.960
#> SRR1202650 5 0.1168 0.9489 0.000 0.032 0.000 0.008 0.960
#> SRR1202651 2 0.1740 0.7718 0.000 0.932 0.056 0.012 0.000
#> SRR1202843 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1202844 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1202845 5 0.1485 0.9457 0.000 0.032 0.000 0.020 0.948
#> SRR1202847 2 0.2921 0.6689 0.000 0.856 0.124 0.020 0.000
#> SRR1202846 2 0.2969 0.6614 0.000 0.852 0.128 0.020 0.000
#> SRR1202945 1 0.0000 0.9482 1.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.3336 0.8100 0.772 0.000 0.000 0.228 0.000
#> SRR1202977 1 0.3336 0.8100 0.772 0.000 0.000 0.228 0.000
#> SRR1202978 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1202979 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1202990 1 0.3336 0.8100 0.772 0.000 0.000 0.228 0.000
#> SRR1202999 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203005 1 0.0000 0.9482 1.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203007 1 0.0000 0.9482 1.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.3336 0.8100 0.772 0.000 0.000 0.228 0.000
#> SRR1203008 1 0.3336 0.8100 0.772 0.000 0.000 0.228 0.000
#> SRR1203010 1 0.0162 0.9474 0.996 0.000 0.000 0.004 0.000
#> SRR1203011 1 0.0000 0.9482 1.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.2377 0.8865 0.872 0.000 0.000 0.128 0.000
#> SRR1203026 1 0.2280 0.8917 0.880 0.000 0.000 0.120 0.000
#> SRR1203027 1 0.1270 0.9283 0.948 0.000 0.000 0.052 0.000
#> SRR1203061 1 0.1671 0.9164 0.924 0.000 0.000 0.076 0.000
#> SRR1203089 1 0.0510 0.9455 0.984 0.000 0.000 0.016 0.000
#> SRR1203125 1 0.0000 0.9482 1.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203129 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203130 1 0.0000 0.9482 1.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.4767 0.8429 0.000 0.420 0.560 0.020 0.000
#> SRR1203131 5 0.1195 0.9469 0.000 0.028 0.000 0.012 0.960
#> SRR1203133 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203138 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203760 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203761 1 0.0000 0.9482 1.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203771 1 0.3305 0.8136 0.776 0.000 0.000 0.224 0.000
#> SRR1203772 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203773 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203774 1 0.0404 0.9450 0.988 0.000 0.000 0.012 0.000
#> SRR1203775 1 0.1478 0.9224 0.936 0.000 0.000 0.064 0.000
#> SRR1203800 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203801 1 0.0000 0.9482 1.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9482 1.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9482 1.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.3336 0.8100 0.772 0.000 0.000 0.228 0.000
#> SRR1203805 1 0.3274 0.8170 0.780 0.000 0.000 0.220 0.000
#> SRR1203806 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203807 1 0.1544 0.9205 0.932 0.000 0.000 0.068 0.000
#> SRR1203808 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203811 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203812 1 0.3336 0.8100 0.772 0.000 0.000 0.228 0.000
#> SRR1203813 1 0.2280 0.8918 0.880 0.000 0.000 0.120 0.000
#> SRR1203814 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203815 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203816 1 0.0000 0.9482 1.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9482 1.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203819 1 0.0000 0.9482 1.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9482 1.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0963 0.9359 0.964 0.000 0.000 0.036 0.000
#> SRR1203824 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203825 1 0.0000 0.9482 1.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203827 1 0.3612 0.8022 0.764 0.000 0.008 0.228 0.000
#> SRR1203828 1 0.2424 0.8839 0.868 0.000 0.000 0.132 0.000
#> SRR1203829 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203830 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203831 1 0.0880 0.9370 0.968 0.000 0.000 0.032 0.000
#> SRR1203832 1 0.3336 0.8100 0.772 0.000 0.000 0.228 0.000
#> SRR1203833 1 0.0000 0.9482 1.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.2280 0.8918 0.880 0.000 0.000 0.120 0.000
#> SRR1203835 1 0.0000 0.9482 1.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.2329 0.8892 0.876 0.000 0.000 0.124 0.000
#> SRR1203837 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203838 1 0.0000 0.9482 1.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9482 1.000 0.000 0.000 0.000 0.000
#> SRR1203842 1 0.3612 0.8022 0.764 0.000 0.008 0.228 0.000
#> SRR1203843 1 0.0162 0.9481 0.996 0.000 0.000 0.004 0.000
#> SRR1203845 2 0.2616 0.7055 0.000 0.880 0.100 0.020 0.000
#> SRR1203844 5 0.2124 0.9173 0.000 0.056 0.000 0.028 0.916
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 2 0.3512 0.9345 0.000 0.772 0.196 0.000 0.032 NA
#> SRR1201590 5 0.1036 0.8907 0.000 0.008 0.004 0.000 0.964 NA
#> SRR1201593 2 0.3512 0.9345 0.000 0.772 0.196 0.000 0.032 NA
#> SRR1201592 5 0.1036 0.8907 0.000 0.008 0.004 0.000 0.964 NA
#> SRR1201617 2 0.3512 0.9345 0.000 0.772 0.196 0.000 0.032 NA
#> SRR1201616 5 0.0951 0.8916 0.000 0.008 0.004 0.000 0.968 NA
#> SRR1201619 2 0.3808 0.9054 0.000 0.736 0.228 0.000 0.000 NA
#> SRR1201618 5 0.0862 0.8921 0.000 0.008 0.004 0.000 0.972 NA
#> SRR1201620 5 0.1036 0.8907 0.000 0.008 0.004 0.000 0.964 NA
#> SRR1201621 2 0.4256 0.9321 0.000 0.740 0.196 0.000 0.032 NA
#> SRR1201623 3 0.3516 0.6257 0.000 0.164 0.788 0.000 0.000 NA
#> SRR1201622 5 0.2841 0.8822 0.000 0.020 0.004 0.008 0.860 NA
#> SRR1201624 4 0.1267 0.9949 0.000 0.000 0.000 0.940 0.060 NA
#> SRR1201625 3 0.7219 -0.2184 0.000 0.128 0.376 0.164 0.000 NA
#> SRR1201626 4 0.1204 0.9975 0.000 0.000 0.000 0.944 0.056 NA
#> SRR1201627 3 0.7219 -0.2184 0.000 0.128 0.376 0.164 0.000 NA
#> SRR1201628 5 0.2483 0.8897 0.000 0.024 0.004 0.016 0.896 NA
#> SRR1201629 3 0.1370 0.8024 0.000 0.012 0.948 0.004 0.000 NA
#> SRR1201630 5 0.2183 0.8923 0.000 0.020 0.004 0.012 0.912 NA
#> SRR1201631 2 0.5060 0.4739 0.000 0.500 0.440 0.012 0.000 NA
#> SRR1201641 3 0.4926 0.0654 0.000 0.360 0.580 0.012 0.000 NA
#> SRR1201640 5 0.2630 0.8861 0.000 0.024 0.004 0.020 0.888 NA
#> SRR1201643 5 0.2422 0.8901 0.000 0.024 0.004 0.016 0.900 NA
#> SRR1201644 3 0.4315 0.4678 0.000 0.244 0.704 0.012 0.000 NA
#> SRR1201661 5 0.2571 0.8872 0.000 0.024 0.004 0.020 0.892 NA
#> SRR1201662 3 0.5067 -0.3361 0.000 0.452 0.488 0.012 0.000 NA
#> SRR1201663 5 0.3998 0.8246 0.000 0.036 0.004 0.016 0.768 NA
#> SRR1201664 3 0.1332 0.8031 0.000 0.012 0.952 0.008 0.000 NA
#> SRR1201665 5 0.0951 0.8913 0.000 0.008 0.004 0.000 0.968 NA
#> SRR1201666 2 0.3136 0.9111 0.000 0.768 0.228 0.000 0.000 NA
#> SRR1201667 2 0.3136 0.9111 0.000 0.768 0.228 0.000 0.000 NA
#> SRR1201668 5 0.3236 0.7966 0.000 0.024 0.000 0.000 0.796 NA
#> SRR1201670 3 0.1577 0.8021 0.000 0.016 0.940 0.008 0.000 NA
#> SRR1201669 3 0.1577 0.8021 0.000 0.016 0.940 0.008 0.000 NA
#> SRR1201673 3 0.1578 0.7940 0.000 0.048 0.936 0.004 0.000 NA
#> SRR1201672 3 0.1578 0.7940 0.000 0.048 0.936 0.004 0.000 NA
#> SRR1201671 5 0.1053 0.8957 0.000 0.012 0.004 0.000 0.964 NA
#> SRR1201677 3 0.1578 0.7940 0.000 0.048 0.936 0.004 0.000 NA
#> SRR1201676 3 0.1578 0.7940 0.000 0.048 0.936 0.004 0.000 NA
#> SRR1201675 3 0.1578 0.7940 0.000 0.048 0.936 0.004 0.000 NA
#> SRR1201674 3 0.1578 0.7940 0.000 0.048 0.936 0.004 0.000 NA
#> SRR1201678 3 0.1578 0.7940 0.000 0.048 0.936 0.004 0.000 NA
#> SRR1201682 2 0.3904 0.9014 0.000 0.732 0.232 0.004 0.000 NA
#> SRR1201683 2 0.3904 0.9014 0.000 0.732 0.232 0.004 0.000 NA
#> SRR1201680 2 0.3904 0.9014 0.000 0.732 0.232 0.004 0.000 NA
#> SRR1201681 2 0.3904 0.9014 0.000 0.732 0.232 0.004 0.000 NA
#> SRR1201679 5 0.0665 0.8932 0.000 0.008 0.004 0.000 0.980 NA
#> SRR1201686 3 0.1750 0.7903 0.000 0.012 0.932 0.016 0.000 NA
#> SRR1201687 3 0.1750 0.7903 0.000 0.012 0.932 0.016 0.000 NA
#> SRR1201688 3 0.1750 0.7903 0.000 0.012 0.932 0.016 0.000 NA
#> SRR1201689 3 0.1750 0.7903 0.000 0.012 0.932 0.016 0.000 NA
#> SRR1201685 5 0.3873 0.7677 0.000 0.020 0.000 0.032 0.772 NA
#> SRR1201692 3 0.0405 0.8131 0.000 0.008 0.988 0.000 0.000 NA
#> SRR1201691 3 0.0405 0.8131 0.000 0.008 0.988 0.000 0.000 NA
#> SRR1201690 5 0.2543 0.8889 0.000 0.024 0.004 0.016 0.892 NA
#> SRR1201696 3 0.0405 0.8131 0.000 0.008 0.988 0.000 0.000 NA
#> SRR1201695 3 0.0405 0.8131 0.000 0.008 0.988 0.000 0.000 NA
#> SRR1201694 3 0.0405 0.8131 0.000 0.008 0.988 0.000 0.000 NA
#> SRR1201693 3 0.0405 0.8131 0.000 0.008 0.988 0.000 0.000 NA
#> SRR1201697 3 0.0405 0.8131 0.000 0.008 0.988 0.000 0.000 NA
#> SRR1201698 3 0.0405 0.8131 0.000 0.008 0.988 0.000 0.000 NA
#> SRR1201700 5 0.2508 0.8898 0.000 0.024 0.004 0.012 0.892 NA
#> SRR1201708 3 0.0000 0.8135 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201707 3 0.0000 0.8135 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201706 3 0.0000 0.8135 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201702 3 0.0000 0.8135 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201705 3 0.0000 0.8135 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201701 3 0.0000 0.8135 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201704 3 0.0000 0.8135 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201703 3 0.0000 0.8135 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201716 3 0.0291 0.8134 0.000 0.000 0.992 0.004 0.000 NA
#> SRR1201715 3 0.0291 0.8134 0.000 0.000 0.992 0.004 0.000 NA
#> SRR1201717 3 0.0291 0.8134 0.000 0.000 0.992 0.004 0.000 NA
#> SRR1201712 3 0.0291 0.8134 0.000 0.000 0.992 0.004 0.000 NA
#> SRR1201709 5 0.2601 0.8883 0.000 0.024 0.004 0.016 0.888 NA
#> SRR1201711 3 0.0291 0.8134 0.000 0.000 0.992 0.004 0.000 NA
#> SRR1201714 3 0.0291 0.8134 0.000 0.000 0.992 0.004 0.000 NA
#> SRR1201713 3 0.0291 0.8134 0.000 0.000 0.992 0.004 0.000 NA
#> SRR1201710 3 0.0291 0.8134 0.000 0.000 0.992 0.004 0.000 NA
#> SRR1201719 3 0.3994 0.5673 0.000 0.196 0.752 0.012 0.000 NA
#> SRR1201718 5 0.3411 0.8591 0.000 0.040 0.012 0.028 0.848 NA
#> SRR1201721 3 0.0291 0.8137 0.000 0.000 0.992 0.004 0.000 NA
#> SRR1201720 5 0.2601 0.8884 0.000 0.024 0.004 0.016 0.888 NA
#> SRR1201723 3 0.0665 0.8062 0.000 0.008 0.980 0.008 0.000 NA
#> SRR1201722 5 0.3998 0.8246 0.000 0.036 0.004 0.016 0.768 NA
#> SRR1201725 3 0.1536 0.8013 0.000 0.020 0.944 0.012 0.000 NA
#> SRR1201724 5 0.2961 0.8777 0.000 0.024 0.008 0.028 0.872 NA
#> SRR1201726 5 0.2543 0.8889 0.000 0.024 0.004 0.016 0.892 NA
#> SRR1201727 3 0.0000 0.8135 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201731 3 0.0291 0.8137 0.000 0.000 0.992 0.004 0.000 NA
#> SRR1201730 5 0.2882 0.8816 0.000 0.024 0.008 0.024 0.876 NA
#> SRR1201734 2 0.3512 0.9345 0.000 0.772 0.196 0.000 0.032 NA
#> SRR1201733 5 0.0951 0.8913 0.000 0.008 0.004 0.000 0.968 NA
#> SRR1201736 5 0.1707 0.8812 0.000 0.012 0.004 0.000 0.928 NA
#> SRR1201737 2 0.3136 0.9111 0.000 0.768 0.228 0.000 0.000 NA
#> SRR1201739 2 0.3136 0.9111 0.000 0.768 0.228 0.000 0.000 NA
#> SRR1201738 5 0.0870 0.8926 0.000 0.012 0.004 0.000 0.972 NA
#> SRR1201742 5 0.0665 0.8931 0.000 0.008 0.004 0.000 0.980 NA
#> SRR1201743 2 0.3766 0.9037 0.000 0.736 0.232 0.000 0.000 NA
#> SRR1201745 2 0.4295 0.9297 0.000 0.740 0.192 0.000 0.036 NA
#> SRR1201744 5 0.2320 0.8638 0.000 0.024 0.004 0.000 0.892 NA
#> SRR1201749 5 0.1442 0.8862 0.000 0.012 0.004 0.000 0.944 NA
#> SRR1201750 2 0.4256 0.9321 0.000 0.740 0.196 0.000 0.032 NA
#> SRR1201752 3 0.1492 0.7971 0.000 0.024 0.940 0.000 0.000 NA
#> SRR1201751 5 0.2508 0.8898 0.000 0.024 0.004 0.012 0.892 NA
#> SRR1201754 2 0.4600 0.7937 0.000 0.648 0.300 0.012 0.000 NA
#> SRR1201753 5 0.1026 0.8972 0.000 0.008 0.004 0.008 0.968 NA
#> SRR1201758 5 0.5189 0.5365 0.000 0.024 0.000 0.072 0.624 NA
#> SRR1201759 3 0.1844 0.7869 0.000 0.016 0.928 0.016 0.000 NA
#> SRR1201760 5 0.2483 0.8897 0.000 0.024 0.004 0.016 0.896 NA
#> SRR1201761 3 0.0717 0.8118 0.000 0.008 0.976 0.000 0.000 NA
#> SRR1201763 3 0.7219 -0.2184 0.000 0.128 0.376 0.164 0.000 NA
#> SRR1201762 4 0.1204 0.9975 0.000 0.000 0.000 0.944 0.056 NA
#> SRR1201764 5 0.5646 0.0295 0.000 0.016 0.000 0.428 0.460 NA
#> SRR1201766 5 0.1036 0.8907 0.000 0.008 0.004 0.000 0.964 NA
#> SRR1201768 2 0.3652 0.9335 0.000 0.768 0.196 0.000 0.032 NA
#> SRR1201769 2 0.3652 0.9335 0.000 0.768 0.196 0.000 0.032 NA
#> SRR1201767 2 0.3652 0.9335 0.000 0.768 0.196 0.000 0.032 NA
#> SRR1201770 2 0.3652 0.9335 0.000 0.768 0.196 0.000 0.032 NA
#> SRR1201771 2 0.3652 0.9335 0.000 0.768 0.196 0.000 0.032 NA
#> SRR1201772 2 0.3652 0.9335 0.000 0.768 0.196 0.000 0.032 NA
#> SRR1201773 2 0.3652 0.9335 0.000 0.768 0.196 0.000 0.032 NA
#> SRR1201774 2 0.3652 0.9335 0.000 0.768 0.196 0.000 0.032 NA
#> SRR1201786 2 0.3652 0.9335 0.000 0.768 0.196 0.000 0.032 NA
#> SRR1201784 2 0.3652 0.9335 0.000 0.768 0.196 0.000 0.032 NA
#> SRR1201785 2 0.3652 0.9335 0.000 0.768 0.196 0.000 0.032 NA
#> SRR1201778 5 0.1442 0.8862 0.000 0.012 0.004 0.000 0.944 NA
#> SRR1201779 2 0.3652 0.9335 0.000 0.768 0.196 0.000 0.032 NA
#> SRR1201781 2 0.3652 0.9335 0.000 0.768 0.196 0.000 0.032 NA
#> SRR1201780 2 0.3652 0.9335 0.000 0.768 0.196 0.000 0.032 NA
#> SRR1201783 2 0.3652 0.9335 0.000 0.768 0.196 0.000 0.032 NA
#> SRR1201782 2 0.3652 0.9335 0.000 0.768 0.196 0.000 0.032 NA
#> SRR1201798 2 0.3512 0.9345 0.000 0.772 0.196 0.000 0.032 NA
#> SRR1201797 2 0.3512 0.9345 0.000 0.772 0.196 0.000 0.032 NA
#> SRR1201796 2 0.3512 0.9345 0.000 0.772 0.196 0.000 0.032 NA
#> SRR1201795 2 0.3512 0.9345 0.000 0.772 0.196 0.000 0.032 NA
#> SRR1201799 2 0.3512 0.9345 0.000 0.772 0.196 0.000 0.032 NA
#> SRR1201794 2 0.3512 0.9345 0.000 0.772 0.196 0.000 0.032 NA
#> SRR1201793 2 0.3512 0.9345 0.000 0.772 0.196 0.000 0.032 NA
#> SRR1201792 2 0.3512 0.9345 0.000 0.772 0.196 0.000 0.032 NA
#> SRR1201791 5 0.1956 0.8466 0.000 0.080 0.004 0.000 0.908 NA
#> SRR1201807 2 0.4256 0.9321 0.000 0.740 0.196 0.000 0.032 NA
#> SRR1201808 2 0.4256 0.9321 0.000 0.740 0.196 0.000 0.032 NA
#> SRR1201803 2 0.4256 0.9321 0.000 0.740 0.196 0.000 0.032 NA
#> SRR1201804 2 0.4256 0.9321 0.000 0.740 0.196 0.000 0.032 NA
#> SRR1201805 2 0.4256 0.9321 0.000 0.740 0.196 0.000 0.032 NA
#> SRR1201806 2 0.4256 0.9321 0.000 0.740 0.196 0.000 0.032 NA
#> SRR1201801 2 0.4256 0.9321 0.000 0.740 0.196 0.000 0.032 NA
#> SRR1201802 2 0.4256 0.9321 0.000 0.740 0.196 0.000 0.032 NA
#> SRR1201800 5 0.1138 0.8901 0.000 0.012 0.004 0.000 0.960 NA
#> SRR1201814 2 0.4256 0.9321 0.000 0.740 0.196 0.000 0.032 NA
#> SRR1201816 2 0.4256 0.9321 0.000 0.740 0.196 0.000 0.032 NA
#> SRR1201815 2 0.4256 0.9321 0.000 0.740 0.196 0.000 0.032 NA
#> SRR1201819 2 0.4256 0.9321 0.000 0.740 0.196 0.000 0.032 NA
#> SRR1201820 2 0.4256 0.9321 0.000 0.740 0.196 0.000 0.032 NA
#> SRR1201813 5 0.2306 0.8220 0.000 0.092 0.004 0.000 0.888 NA
#> SRR1201817 2 0.4256 0.9321 0.000 0.740 0.196 0.000 0.032 NA
#> SRR1201818 2 0.4256 0.9321 0.000 0.740 0.196 0.000 0.032 NA
#> SRR1201825 5 0.3176 0.8316 0.000 0.016 0.004 0.008 0.824 NA
#> SRR1201827 3 0.5027 0.5158 0.000 0.052 0.680 0.052 0.000 NA
#> SRR1201828 3 0.5027 0.5158 0.000 0.052 0.680 0.052 0.000 NA
#> SRR1201826 5 0.2688 0.8885 0.000 0.024 0.004 0.020 0.884 NA
#> SRR1201829 3 0.5027 0.5158 0.000 0.052 0.680 0.052 0.000 NA
#> SRR1201830 3 0.5027 0.5158 0.000 0.052 0.680 0.052 0.000 NA
#> SRR1201831 3 0.5027 0.5158 0.000 0.052 0.680 0.052 0.000 NA
#> SRR1201832 3 0.5027 0.5158 0.000 0.052 0.680 0.052 0.000 NA
#> SRR1201833 3 0.5027 0.5158 0.000 0.052 0.680 0.052 0.000 NA
#> SRR1201865 3 0.5350 0.3488 0.000 0.276 0.620 0.008 0.016 NA
#> SRR1201866 3 0.5350 0.3488 0.000 0.276 0.620 0.008 0.016 NA
#> SRR1201867 3 0.5350 0.3488 0.000 0.276 0.620 0.008 0.016 NA
#> SRR1201861 3 0.5350 0.3488 0.000 0.276 0.620 0.008 0.016 NA
#> SRR1201862 3 0.5350 0.3488 0.000 0.276 0.620 0.008 0.016 NA
#> SRR1201863 3 0.5350 0.3488 0.000 0.276 0.620 0.008 0.016 NA
#> SRR1201859 5 0.2971 0.8284 0.000 0.020 0.004 0.000 0.832 NA
#> SRR1201864 3 0.5350 0.3488 0.000 0.276 0.620 0.008 0.016 NA
#> SRR1201860 3 0.5350 0.3488 0.000 0.276 0.620 0.008 0.016 NA
#> SRR1201873 3 0.1116 0.8110 0.000 0.008 0.960 0.004 0.000 NA
#> SRR1201871 5 0.3593 0.8374 0.000 0.024 0.004 0.008 0.788 NA
#> SRR1201872 3 0.1116 0.8110 0.000 0.008 0.960 0.004 0.000 NA
#> SRR1201980 3 0.0551 0.8128 0.000 0.008 0.984 0.004 0.000 NA
#> SRR1201979 5 0.2450 0.8903 0.000 0.024 0.004 0.012 0.896 NA
#> SRR1201982 3 0.1167 0.8081 0.000 0.008 0.960 0.012 0.000 NA
#> SRR1201981 5 0.2359 0.8903 0.000 0.024 0.004 0.016 0.904 NA
#> SRR1201998 3 0.3836 0.6017 0.000 0.176 0.772 0.012 0.000 NA
#> SRR1201996 5 0.2713 0.8840 0.000 0.024 0.004 0.024 0.884 NA
#> SRR1201997 3 0.4216 0.5020 0.000 0.228 0.720 0.012 0.000 NA
#> SRR1202005 2 0.6703 0.6480 0.000 0.536 0.240 0.016 0.140 NA
#> SRR1202006 2 0.5060 0.4757 0.000 0.500 0.440 0.012 0.000 NA
#> SRR1202088 3 0.4225 -0.2662 0.000 0.480 0.508 0.004 0.000 NA
#> SRR1202087 5 0.3344 0.7947 0.000 0.104 0.008 0.000 0.828 NA
#> SRR1202093 2 0.3136 0.9111 0.000 0.768 0.228 0.000 0.000 NA
#> SRR1202092 5 0.0767 0.8927 0.000 0.008 0.004 0.000 0.976 NA
#> SRR1202288 5 0.1442 0.8862 0.000 0.012 0.004 0.000 0.944 NA
#> SRR1202289 2 0.3512 0.9345 0.000 0.772 0.196 0.000 0.032 NA
#> SRR1202299 2 0.4256 0.9321 0.000 0.740 0.196 0.000 0.032 NA
#> SRR1202298 5 0.3154 0.6681 0.000 0.184 0.004 0.000 0.800 NA
#> SRR1202303 3 0.7219 -0.2184 0.000 0.128 0.376 0.164 0.000 NA
#> SRR1202372 2 0.4256 0.9321 0.000 0.740 0.196 0.000 0.032 NA
#> SRR1202371 5 0.1370 0.8874 0.000 0.012 0.004 0.000 0.948 NA
#> SRR1202563 5 0.2846 0.8487 0.000 0.016 0.004 0.008 0.856 NA
#> SRR1202565 3 0.4935 -0.0533 0.000 0.388 0.556 0.012 0.000 NA
#> SRR1202564 3 0.4935 -0.0533 0.000 0.388 0.556 0.012 0.000 NA
#> SRR1202649 5 0.3058 0.8367 0.000 0.016 0.004 0.008 0.836 NA
#> SRR1202650 5 0.0665 0.8931 0.000 0.008 0.004 0.000 0.980 NA
#> SRR1202651 2 0.4810 0.6793 0.000 0.588 0.360 0.012 0.000 NA
#> SRR1202843 1 0.0458 0.9155 0.984 0.016 0.000 0.000 0.000 NA
#> SRR1202844 1 0.0363 0.9161 0.988 0.012 0.000 0.000 0.000 NA
#> SRR1202845 5 0.2295 0.8905 0.000 0.024 0.004 0.016 0.908 NA
#> SRR1202847 2 0.5070 0.4141 0.000 0.480 0.460 0.012 0.000 NA
#> SRR1202846 2 0.5070 0.4141 0.000 0.480 0.460 0.012 0.000 NA
#> SRR1202945 1 0.0146 0.9163 0.996 0.004 0.000 0.000 0.000 NA
#> SRR1202949 1 0.3607 0.6839 0.652 0.000 0.000 0.000 0.000 NA
#> SRR1202977 1 0.3607 0.6839 0.652 0.000 0.000 0.000 0.000 NA
#> SRR1202978 1 0.0458 0.9141 0.984 0.016 0.000 0.000 0.000 NA
#> SRR1202979 1 0.0458 0.9161 0.984 0.016 0.000 0.000 0.000 NA
#> SRR1202990 1 0.3607 0.6839 0.652 0.000 0.000 0.000 0.000 NA
#> SRR1202999 1 0.0547 0.9160 0.980 0.020 0.000 0.000 0.000 NA
#> SRR1203005 1 0.0547 0.9161 0.980 0.020 0.000 0.000 0.000 NA
#> SRR1203006 1 0.0547 0.9148 0.980 0.020 0.000 0.000 0.000 NA
#> SRR1203007 1 0.0547 0.9148 0.980 0.020 0.000 0.000 0.000 NA
#> SRR1203009 1 0.3607 0.6839 0.652 0.000 0.000 0.000 0.000 NA
#> SRR1203008 1 0.3607 0.6839 0.652 0.000 0.000 0.000 0.000 NA
#> SRR1203010 1 0.0260 0.9163 0.992 0.008 0.000 0.000 0.000 NA
#> SRR1203011 1 0.0260 0.9163 0.992 0.008 0.000 0.000 0.000 NA
#> SRR1203025 1 0.2912 0.8283 0.816 0.012 0.000 0.000 0.000 NA
#> SRR1203026 1 0.2814 0.8294 0.820 0.008 0.000 0.000 0.000 NA
#> SRR1203027 1 0.2163 0.8779 0.892 0.016 0.000 0.000 0.000 NA
#> SRR1203061 1 0.2311 0.8709 0.880 0.016 0.000 0.000 0.000 NA
#> SRR1203089 1 0.0717 0.9133 0.976 0.016 0.000 0.000 0.000 NA
#> SRR1203125 1 0.0508 0.9142 0.984 0.012 0.000 0.000 0.000 NA
#> SRR1203128 1 0.0547 0.9148 0.980 0.020 0.000 0.000 0.000 NA
#> SRR1203129 1 0.0547 0.9148 0.980 0.020 0.000 0.000 0.000 NA
#> SRR1203130 1 0.0363 0.9158 0.988 0.012 0.000 0.000 0.000 NA
#> SRR1203132 3 0.1078 0.8092 0.000 0.008 0.964 0.012 0.000 NA
#> SRR1203131 5 0.2422 0.8901 0.000 0.024 0.004 0.016 0.900 NA
#> SRR1203133 1 0.0547 0.9148 0.980 0.020 0.000 0.000 0.000 NA
#> SRR1203138 1 0.0547 0.9148 0.980 0.020 0.000 0.000 0.000 NA
#> SRR1203760 1 0.0458 0.9141 0.984 0.016 0.000 0.000 0.000 NA
#> SRR1203761 1 0.0458 0.9141 0.984 0.016 0.000 0.000 0.000 NA
#> SRR1203770 1 0.0547 0.9148 0.980 0.020 0.000 0.000 0.000 NA
#> SRR1203771 1 0.3531 0.7034 0.672 0.000 0.000 0.000 0.000 NA
#> SRR1203772 1 0.0547 0.9148 0.980 0.020 0.000 0.000 0.000 NA
#> SRR1203773 1 0.0458 0.9141 0.984 0.016 0.000 0.000 0.000 NA
#> SRR1203774 1 0.1074 0.9080 0.960 0.012 0.000 0.000 0.000 NA
#> SRR1203775 1 0.2019 0.8802 0.900 0.012 0.000 0.000 0.000 NA
#> SRR1203800 1 0.0363 0.9143 0.988 0.012 0.000 0.000 0.000 NA
#> SRR1203801 1 0.0458 0.9151 0.984 0.016 0.000 0.000 0.000 NA
#> SRR1203802 1 0.0632 0.9148 0.976 0.024 0.000 0.000 0.000 NA
#> SRR1203803 1 0.0547 0.9148 0.980 0.020 0.000 0.000 0.000 NA
#> SRR1203804 1 0.3607 0.6839 0.652 0.000 0.000 0.000 0.000 NA
#> SRR1203805 1 0.3636 0.7095 0.676 0.004 0.000 0.000 0.000 NA
#> SRR1203806 1 0.0632 0.9148 0.976 0.024 0.000 0.000 0.000 NA
#> SRR1203807 1 0.2112 0.8798 0.896 0.016 0.000 0.000 0.000 NA
#> SRR1203808 1 0.0547 0.9150 0.980 0.020 0.000 0.000 0.000 NA
#> SRR1203811 1 0.0458 0.9161 0.984 0.016 0.000 0.000 0.000 NA
#> SRR1203812 1 0.3607 0.6839 0.652 0.000 0.000 0.000 0.000 NA
#> SRR1203813 1 0.2877 0.8313 0.820 0.012 0.000 0.000 0.000 NA
#> SRR1203814 1 0.0547 0.9148 0.980 0.020 0.000 0.000 0.000 NA
#> SRR1203815 1 0.0260 0.9161 0.992 0.008 0.000 0.000 0.000 NA
#> SRR1203816 1 0.0547 0.9148 0.980 0.020 0.000 0.000 0.000 NA
#> SRR1203817 1 0.0363 0.9163 0.988 0.012 0.000 0.000 0.000 NA
#> SRR1203818 1 0.0458 0.9162 0.984 0.016 0.000 0.000 0.000 NA
#> SRR1203819 1 0.0363 0.9161 0.988 0.012 0.000 0.000 0.000 NA
#> SRR1203822 1 0.0363 0.9164 0.988 0.012 0.000 0.000 0.000 NA
#> SRR1203823 1 0.1075 0.9029 0.952 0.000 0.000 0.000 0.000 NA
#> SRR1203824 1 0.0547 0.9148 0.980 0.020 0.000 0.000 0.000 NA
#> SRR1203825 1 0.0547 0.9148 0.980 0.020 0.000 0.000 0.000 NA
#> SRR1203826 1 0.0632 0.9148 0.976 0.024 0.000 0.000 0.000 NA
#> SRR1203827 1 0.3769 0.6683 0.640 0.004 0.000 0.000 0.000 NA
#> SRR1203828 1 0.2980 0.8237 0.808 0.012 0.000 0.000 0.000 NA
#> SRR1203829 1 0.0260 0.9162 0.992 0.008 0.000 0.000 0.000 NA
#> SRR1203830 1 0.0632 0.9148 0.976 0.024 0.000 0.000 0.000 NA
#> SRR1203831 1 0.1391 0.9024 0.944 0.016 0.000 0.000 0.000 NA
#> SRR1203832 1 0.3607 0.6839 0.652 0.000 0.000 0.000 0.000 NA
#> SRR1203833 1 0.0363 0.9143 0.988 0.012 0.000 0.000 0.000 NA
#> SRR1203834 1 0.2768 0.8397 0.832 0.012 0.000 0.000 0.000 NA
#> SRR1203835 1 0.0363 0.9158 0.988 0.012 0.000 0.000 0.000 NA
#> SRR1203836 1 0.2877 0.8312 0.820 0.012 0.000 0.000 0.000 NA
#> SRR1203837 1 0.0458 0.9155 0.984 0.016 0.000 0.000 0.000 NA
#> SRR1203838 1 0.0146 0.9164 0.996 0.004 0.000 0.000 0.000 NA
#> SRR1203839 1 0.0458 0.9154 0.984 0.016 0.000 0.000 0.000 NA
#> SRR1203842 1 0.3769 0.6683 0.640 0.004 0.000 0.000 0.000 NA
#> SRR1203843 1 0.0458 0.9141 0.984 0.016 0.000 0.000 0.000 NA
#> SRR1203845 2 0.5012 0.5834 0.000 0.540 0.400 0.012 0.000 NA
#> SRR1203844 5 0.2526 0.8898 0.000 0.028 0.004 0.020 0.896 NA
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 3)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["CV", "skmeans"]
# you can also extract it by
# res = res_list["CV:skmeans"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'CV' method.
#> Subgroups are detected by 'skmeans' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 4.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 0.922 0.939 0.975 0.4254 0.583 0.583
#> 3 3 0.696 0.831 0.900 0.5323 0.730 0.545
#> 4 4 0.977 0.932 0.970 0.1417 0.875 0.652
#> 5 5 0.887 0.845 0.910 0.0344 0.957 0.837
#> 6 6 0.841 0.747 0.845 0.0279 0.977 0.903
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 4
#> attr(,"optional")
#> [1] 2
There is also optional best \(k\) = 2 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0.0000 0.972 0.000 1.000
#> SRR1201590 2 0.1633 0.953 0.024 0.976
#> SRR1201593 2 0.0000 0.972 0.000 1.000
#> SRR1201592 2 0.0000 0.972 0.000 1.000
#> SRR1201617 2 0.0000 0.972 0.000 1.000
#> SRR1201616 2 0.5408 0.855 0.124 0.876
#> SRR1201619 2 0.0000 0.972 0.000 1.000
#> SRR1201618 2 0.3733 0.910 0.072 0.928
#> SRR1201620 2 0.4562 0.886 0.096 0.904
#> SRR1201621 2 0.0000 0.972 0.000 1.000
#> SRR1201623 2 0.0000 0.972 0.000 1.000
#> SRR1201622 2 0.2948 0.929 0.052 0.948
#> SRR1201624 1 0.0000 0.976 1.000 0.000
#> SRR1201625 2 0.0000 0.972 0.000 1.000
#> SRR1201626 1 0.0000 0.976 1.000 0.000
#> SRR1201627 2 0.0000 0.972 0.000 1.000
#> SRR1201628 2 0.0000 0.972 0.000 1.000
#> SRR1201629 2 0.0000 0.972 0.000 1.000
#> SRR1201630 2 0.6801 0.787 0.180 0.820
#> SRR1201631 2 0.0000 0.972 0.000 1.000
#> SRR1201641 2 0.0000 0.972 0.000 1.000
#> SRR1201640 2 0.0000 0.972 0.000 1.000
#> SRR1201643 2 0.0376 0.969 0.004 0.996
#> SRR1201644 2 0.0000 0.972 0.000 1.000
#> SRR1201661 2 0.6531 0.802 0.168 0.832
#> SRR1201662 2 0.0000 0.972 0.000 1.000
#> SRR1201663 2 0.6438 0.807 0.164 0.836
#> SRR1201664 2 0.0000 0.972 0.000 1.000
#> SRR1201665 2 0.8327 0.658 0.264 0.736
#> SRR1201666 2 0.0000 0.972 0.000 1.000
#> SRR1201667 2 0.0000 0.972 0.000 1.000
#> SRR1201668 1 0.9833 0.237 0.576 0.424
#> SRR1201670 2 0.0000 0.972 0.000 1.000
#> SRR1201669 2 0.0000 0.972 0.000 1.000
#> SRR1201673 2 0.0000 0.972 0.000 1.000
#> SRR1201672 2 0.0000 0.972 0.000 1.000
#> SRR1201671 2 0.0000 0.972 0.000 1.000
#> SRR1201677 2 0.0000 0.972 0.000 1.000
#> SRR1201676 2 0.0000 0.972 0.000 1.000
#> SRR1201675 2 0.0000 0.972 0.000 1.000
#> SRR1201674 2 0.0000 0.972 0.000 1.000
#> SRR1201678 2 0.0000 0.972 0.000 1.000
#> SRR1201682 2 0.0000 0.972 0.000 1.000
#> SRR1201683 2 0.0000 0.972 0.000 1.000
#> SRR1201680 2 0.0000 0.972 0.000 1.000
#> SRR1201681 2 0.0000 0.972 0.000 1.000
#> SRR1201679 2 0.0000 0.972 0.000 1.000
#> SRR1201686 2 0.0000 0.972 0.000 1.000
#> SRR1201687 2 0.0000 0.972 0.000 1.000
#> SRR1201688 2 0.0000 0.972 0.000 1.000
#> SRR1201689 2 0.0000 0.972 0.000 1.000
#> SRR1201685 1 0.0000 0.976 1.000 0.000
#> SRR1201692 2 0.0000 0.972 0.000 1.000
#> SRR1201691 2 0.0000 0.972 0.000 1.000
#> SRR1201690 2 0.2423 0.940 0.040 0.960
#> SRR1201696 2 0.0000 0.972 0.000 1.000
#> SRR1201695 2 0.0000 0.972 0.000 1.000
#> SRR1201694 2 0.0000 0.972 0.000 1.000
#> SRR1201693 2 0.0000 0.972 0.000 1.000
#> SRR1201697 2 0.0000 0.972 0.000 1.000
#> SRR1201698 2 0.0000 0.972 0.000 1.000
#> SRR1201700 2 0.0000 0.972 0.000 1.000
#> SRR1201708 2 0.0000 0.972 0.000 1.000
#> SRR1201707 2 0.0000 0.972 0.000 1.000
#> SRR1201706 2 0.0000 0.972 0.000 1.000
#> SRR1201702 2 0.0000 0.972 0.000 1.000
#> SRR1201705 2 0.0000 0.972 0.000 1.000
#> SRR1201701 2 0.0000 0.972 0.000 1.000
#> SRR1201704 2 0.0000 0.972 0.000 1.000
#> SRR1201703 2 0.0000 0.972 0.000 1.000
#> SRR1201716 2 0.0000 0.972 0.000 1.000
#> SRR1201715 2 0.0000 0.972 0.000 1.000
#> SRR1201717 2 0.0000 0.972 0.000 1.000
#> SRR1201712 2 0.0000 0.972 0.000 1.000
#> SRR1201709 2 0.0000 0.972 0.000 1.000
#> SRR1201711 2 0.0000 0.972 0.000 1.000
#> SRR1201714 2 0.0000 0.972 0.000 1.000
#> SRR1201713 2 0.0000 0.972 0.000 1.000
#> SRR1201710 2 0.0000 0.972 0.000 1.000
#> SRR1201719 2 0.0000 0.972 0.000 1.000
#> SRR1201718 2 0.0000 0.972 0.000 1.000
#> SRR1201721 2 0.0000 0.972 0.000 1.000
#> SRR1201720 2 0.0000 0.972 0.000 1.000
#> SRR1201723 2 0.0000 0.972 0.000 1.000
#> SRR1201722 2 0.7219 0.759 0.200 0.800
#> SRR1201725 2 0.0000 0.972 0.000 1.000
#> SRR1201724 2 0.0000 0.972 0.000 1.000
#> SRR1201726 2 0.1414 0.957 0.020 0.980
#> SRR1201727 2 0.0000 0.972 0.000 1.000
#> SRR1201731 2 0.0000 0.972 0.000 1.000
#> SRR1201730 2 0.0000 0.972 0.000 1.000
#> SRR1201734 2 0.0000 0.972 0.000 1.000
#> SRR1201733 2 0.7376 0.748 0.208 0.792
#> SRR1201736 2 0.9710 0.363 0.400 0.600
#> SRR1201737 2 0.0000 0.972 0.000 1.000
#> SRR1201739 2 0.0000 0.972 0.000 1.000
#> SRR1201738 2 0.0000 0.972 0.000 1.000
#> SRR1201742 2 0.0000 0.972 0.000 1.000
#> SRR1201743 2 0.0000 0.972 0.000 1.000
#> SRR1201745 2 0.0000 0.972 0.000 1.000
#> SRR1201744 1 0.2236 0.941 0.964 0.036
#> SRR1201749 2 0.9710 0.363 0.400 0.600
#> SRR1201750 2 0.0000 0.972 0.000 1.000
#> SRR1201752 2 0.0000 0.972 0.000 1.000
#> SRR1201751 2 0.0000 0.972 0.000 1.000
#> SRR1201754 2 0.0000 0.972 0.000 1.000
#> SRR1201753 2 0.7219 0.759 0.200 0.800
#> SRR1201758 1 0.0000 0.976 1.000 0.000
#> SRR1201759 2 0.0000 0.972 0.000 1.000
#> SRR1201760 2 0.2948 0.929 0.052 0.948
#> SRR1201761 2 0.0000 0.972 0.000 1.000
#> SRR1201763 2 0.0000 0.972 0.000 1.000
#> SRR1201762 1 0.0000 0.976 1.000 0.000
#> SRR1201764 2 0.9909 0.233 0.444 0.556
#> SRR1201766 2 0.0672 0.966 0.008 0.992
#> SRR1201768 2 0.0000 0.972 0.000 1.000
#> SRR1201769 2 0.0000 0.972 0.000 1.000
#> SRR1201767 2 0.0000 0.972 0.000 1.000
#> SRR1201770 2 0.0000 0.972 0.000 1.000
#> SRR1201771 2 0.0000 0.972 0.000 1.000
#> SRR1201772 2 0.0000 0.972 0.000 1.000
#> SRR1201773 2 0.0000 0.972 0.000 1.000
#> SRR1201774 2 0.0000 0.972 0.000 1.000
#> SRR1201786 2 0.0000 0.972 0.000 1.000
#> SRR1201784 2 0.0000 0.972 0.000 1.000
#> SRR1201785 2 0.0000 0.972 0.000 1.000
#> SRR1201778 2 0.9710 0.363 0.400 0.600
#> SRR1201779 2 0.0000 0.972 0.000 1.000
#> SRR1201781 2 0.0000 0.972 0.000 1.000
#> SRR1201780 2 0.0000 0.972 0.000 1.000
#> SRR1201783 2 0.0000 0.972 0.000 1.000
#> SRR1201782 2 0.0000 0.972 0.000 1.000
#> SRR1201798 2 0.0000 0.972 0.000 1.000
#> SRR1201797 2 0.0000 0.972 0.000 1.000
#> SRR1201796 2 0.0000 0.972 0.000 1.000
#> SRR1201795 2 0.0000 0.972 0.000 1.000
#> SRR1201799 2 0.0000 0.972 0.000 1.000
#> SRR1201794 2 0.0000 0.972 0.000 1.000
#> SRR1201793 2 0.0000 0.972 0.000 1.000
#> SRR1201792 2 0.0000 0.972 0.000 1.000
#> SRR1201791 2 0.0000 0.972 0.000 1.000
#> SRR1201807 2 0.0000 0.972 0.000 1.000
#> SRR1201808 2 0.0000 0.972 0.000 1.000
#> SRR1201803 2 0.0000 0.972 0.000 1.000
#> SRR1201804 2 0.0000 0.972 0.000 1.000
#> SRR1201805 2 0.0000 0.972 0.000 1.000
#> SRR1201806 2 0.0000 0.972 0.000 1.000
#> SRR1201801 2 0.0000 0.972 0.000 1.000
#> SRR1201802 2 0.0000 0.972 0.000 1.000
#> SRR1201800 2 0.0000 0.972 0.000 1.000
#> SRR1201814 2 0.0000 0.972 0.000 1.000
#> SRR1201816 2 0.0000 0.972 0.000 1.000
#> SRR1201815 2 0.0000 0.972 0.000 1.000
#> SRR1201819 2 0.0000 0.972 0.000 1.000
#> SRR1201820 2 0.0000 0.972 0.000 1.000
#> SRR1201813 2 0.0000 0.972 0.000 1.000
#> SRR1201817 2 0.0000 0.972 0.000 1.000
#> SRR1201818 2 0.0000 0.972 0.000 1.000
#> SRR1201825 1 0.9710 0.311 0.600 0.400
#> SRR1201827 2 0.0000 0.972 0.000 1.000
#> SRR1201828 2 0.0000 0.972 0.000 1.000
#> SRR1201826 2 0.5519 0.850 0.128 0.872
#> SRR1201829 2 0.0000 0.972 0.000 1.000
#> SRR1201830 2 0.0000 0.972 0.000 1.000
#> SRR1201831 2 0.0000 0.972 0.000 1.000
#> SRR1201832 2 0.0000 0.972 0.000 1.000
#> SRR1201833 2 0.0000 0.972 0.000 1.000
#> SRR1201865 2 0.0000 0.972 0.000 1.000
#> SRR1201866 2 0.0000 0.972 0.000 1.000
#> SRR1201867 2 0.0000 0.972 0.000 1.000
#> SRR1201861 2 0.0000 0.972 0.000 1.000
#> SRR1201862 2 0.0000 0.972 0.000 1.000
#> SRR1201863 2 0.0000 0.972 0.000 1.000
#> SRR1201859 1 0.9710 0.311 0.600 0.400
#> SRR1201864 2 0.0000 0.972 0.000 1.000
#> SRR1201860 2 0.0000 0.972 0.000 1.000
#> SRR1201873 2 0.0000 0.972 0.000 1.000
#> SRR1201871 2 0.8144 0.678 0.252 0.748
#> SRR1201872 2 0.0000 0.972 0.000 1.000
#> SRR1201980 2 0.0000 0.972 0.000 1.000
#> SRR1201979 2 0.0000 0.972 0.000 1.000
#> SRR1201982 2 0.0000 0.972 0.000 1.000
#> SRR1201981 2 0.6801 0.786 0.180 0.820
#> SRR1201998 2 0.0000 0.972 0.000 1.000
#> SRR1201996 2 0.0000 0.972 0.000 1.000
#> SRR1201997 2 0.0000 0.972 0.000 1.000
#> SRR1202005 2 0.0000 0.972 0.000 1.000
#> SRR1202006 2 0.0000 0.972 0.000 1.000
#> SRR1202088 2 0.0000 0.972 0.000 1.000
#> SRR1202087 2 0.0000 0.972 0.000 1.000
#> SRR1202093 2 0.0000 0.972 0.000 1.000
#> SRR1202092 2 0.0000 0.972 0.000 1.000
#> SRR1202288 2 0.9710 0.363 0.400 0.600
#> SRR1202289 2 0.0000 0.972 0.000 1.000
#> SRR1202299 2 0.0000 0.972 0.000 1.000
#> SRR1202298 2 0.0000 0.972 0.000 1.000
#> SRR1202303 2 0.0000 0.972 0.000 1.000
#> SRR1202372 2 0.0000 0.972 0.000 1.000
#> SRR1202371 2 0.9710 0.363 0.400 0.600
#> SRR1202563 1 0.9686 0.322 0.604 0.396
#> SRR1202565 2 0.0000 0.972 0.000 1.000
#> SRR1202564 2 0.0000 0.972 0.000 1.000
#> SRR1202649 1 0.7299 0.726 0.796 0.204
#> SRR1202650 2 0.4939 0.873 0.108 0.892
#> SRR1202651 2 0.0000 0.972 0.000 1.000
#> SRR1202843 1 0.0000 0.976 1.000 0.000
#> SRR1202844 1 0.0000 0.976 1.000 0.000
#> SRR1202845 2 0.4690 0.881 0.100 0.900
#> SRR1202847 2 0.0000 0.972 0.000 1.000
#> SRR1202846 2 0.0000 0.972 0.000 1.000
#> SRR1202945 1 0.0000 0.976 1.000 0.000
#> SRR1202949 1 0.0000 0.976 1.000 0.000
#> SRR1202977 1 0.0000 0.976 1.000 0.000
#> SRR1202978 1 0.0000 0.976 1.000 0.000
#> SRR1202979 1 0.0000 0.976 1.000 0.000
#> SRR1202990 1 0.0000 0.976 1.000 0.000
#> SRR1202999 1 0.0000 0.976 1.000 0.000
#> SRR1203005 1 0.0000 0.976 1.000 0.000
#> SRR1203006 1 0.0000 0.976 1.000 0.000
#> SRR1203007 1 0.0000 0.976 1.000 0.000
#> SRR1203009 1 0.0000 0.976 1.000 0.000
#> SRR1203008 1 0.0000 0.976 1.000 0.000
#> SRR1203010 1 0.0000 0.976 1.000 0.000
#> SRR1203011 1 0.0000 0.976 1.000 0.000
#> SRR1203025 1 0.0000 0.976 1.000 0.000
#> SRR1203026 1 0.0000 0.976 1.000 0.000
#> SRR1203027 1 0.0000 0.976 1.000 0.000
#> SRR1203061 1 0.0000 0.976 1.000 0.000
#> SRR1203089 1 0.0000 0.976 1.000 0.000
#> SRR1203125 1 0.0000 0.976 1.000 0.000
#> SRR1203128 1 0.0000 0.976 1.000 0.000
#> SRR1203129 1 0.0000 0.976 1.000 0.000
#> SRR1203130 1 0.0000 0.976 1.000 0.000
#> SRR1203132 2 0.0000 0.972 0.000 1.000
#> SRR1203131 2 0.7219 0.759 0.200 0.800
#> SRR1203133 1 0.0000 0.976 1.000 0.000
#> SRR1203138 1 0.0000 0.976 1.000 0.000
#> SRR1203760 1 0.0000 0.976 1.000 0.000
#> SRR1203761 1 0.0000 0.976 1.000 0.000
#> SRR1203770 1 0.0000 0.976 1.000 0.000
#> SRR1203771 1 0.0000 0.976 1.000 0.000
#> SRR1203772 1 0.0000 0.976 1.000 0.000
#> SRR1203773 1 0.0000 0.976 1.000 0.000
#> SRR1203774 1 0.0000 0.976 1.000 0.000
#> SRR1203775 1 0.0000 0.976 1.000 0.000
#> SRR1203800 1 0.0000 0.976 1.000 0.000
#> SRR1203801 1 0.0000 0.976 1.000 0.000
#> SRR1203802 1 0.0000 0.976 1.000 0.000
#> SRR1203803 1 0.0000 0.976 1.000 0.000
#> SRR1203804 1 0.0000 0.976 1.000 0.000
#> SRR1203805 1 0.0000 0.976 1.000 0.000
#> SRR1203806 1 0.0000 0.976 1.000 0.000
#> SRR1203807 1 0.0000 0.976 1.000 0.000
#> SRR1203808 1 0.0000 0.976 1.000 0.000
#> SRR1203811 1 0.0000 0.976 1.000 0.000
#> SRR1203812 1 0.0000 0.976 1.000 0.000
#> SRR1203813 1 0.0000 0.976 1.000 0.000
#> SRR1203814 1 0.0000 0.976 1.000 0.000
#> SRR1203815 1 0.0000 0.976 1.000 0.000
#> SRR1203816 1 0.0000 0.976 1.000 0.000
#> SRR1203817 1 0.0000 0.976 1.000 0.000
#> SRR1203818 1 0.0000 0.976 1.000 0.000
#> SRR1203819 1 0.0000 0.976 1.000 0.000
#> SRR1203822 1 0.0000 0.976 1.000 0.000
#> SRR1203823 1 0.0000 0.976 1.000 0.000
#> SRR1203824 1 0.0000 0.976 1.000 0.000
#> SRR1203825 1 0.0000 0.976 1.000 0.000
#> SRR1203826 1 0.0000 0.976 1.000 0.000
#> SRR1203827 1 0.0000 0.976 1.000 0.000
#> SRR1203828 1 0.0000 0.976 1.000 0.000
#> SRR1203829 1 0.0000 0.976 1.000 0.000
#> SRR1203830 1 0.0000 0.976 1.000 0.000
#> SRR1203831 1 0.0000 0.976 1.000 0.000
#> SRR1203832 1 0.0000 0.976 1.000 0.000
#> SRR1203833 1 0.0000 0.976 1.000 0.000
#> SRR1203834 1 0.0000 0.976 1.000 0.000
#> SRR1203835 1 0.0000 0.976 1.000 0.000
#> SRR1203836 1 0.0000 0.976 1.000 0.000
#> SRR1203837 1 0.0000 0.976 1.000 0.000
#> SRR1203838 1 0.0000 0.976 1.000 0.000
#> SRR1203839 1 0.0000 0.976 1.000 0.000
#> SRR1203842 1 0.0000 0.976 1.000 0.000
#> SRR1203843 1 0.0000 0.976 1.000 0.000
#> SRR1203845 2 0.0000 0.972 0.000 1.000
#> SRR1203844 2 0.2778 0.932 0.048 0.952
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201590 2 0.0000 0.7507 0.000 1.000 0.000
#> SRR1201593 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201592 2 0.0000 0.7507 0.000 1.000 0.000
#> SRR1201617 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201616 2 0.0000 0.7507 0.000 1.000 0.000
#> SRR1201619 2 0.4931 0.8361 0.000 0.768 0.232
#> SRR1201618 2 0.0000 0.7507 0.000 1.000 0.000
#> SRR1201620 2 0.0000 0.7507 0.000 1.000 0.000
#> SRR1201621 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201623 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201622 3 0.5517 0.6638 0.004 0.268 0.728
#> SRR1201624 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1201625 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201626 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1201627 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201628 3 0.5733 0.6093 0.000 0.324 0.676
#> SRR1201629 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201630 2 0.0592 0.7464 0.012 0.988 0.000
#> SRR1201631 3 0.4605 0.6111 0.000 0.204 0.796
#> SRR1201641 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201640 2 0.4291 0.6119 0.000 0.820 0.180
#> SRR1201643 3 0.6252 0.4020 0.000 0.444 0.556
#> SRR1201644 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201661 2 0.4539 0.6410 0.016 0.836 0.148
#> SRR1201662 3 0.4346 0.6501 0.000 0.184 0.816
#> SRR1201663 3 0.4887 0.6944 0.000 0.228 0.772
#> SRR1201664 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201665 2 0.0747 0.7446 0.016 0.984 0.000
#> SRR1201666 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201667 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201668 3 0.9702 0.2260 0.320 0.236 0.444
#> SRR1201670 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201669 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201673 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201672 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201671 2 0.3816 0.6564 0.000 0.852 0.148
#> SRR1201677 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201676 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201675 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201674 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201678 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201682 2 0.5859 0.7053 0.000 0.656 0.344
#> SRR1201683 2 0.5859 0.7053 0.000 0.656 0.344
#> SRR1201680 2 0.5859 0.7053 0.000 0.656 0.344
#> SRR1201681 2 0.5859 0.7053 0.000 0.656 0.344
#> SRR1201679 2 0.0000 0.7507 0.000 1.000 0.000
#> SRR1201686 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201687 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201688 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201689 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201685 1 0.3686 0.8498 0.860 0.140 0.000
#> SRR1201692 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201691 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201690 3 0.4887 0.6944 0.000 0.228 0.772
#> SRR1201696 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201695 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201694 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201693 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201697 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201698 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201700 3 0.4887 0.6944 0.000 0.228 0.772
#> SRR1201708 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201707 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201706 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201702 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201705 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201701 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201704 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201703 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201716 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201715 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201717 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201712 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201709 3 0.4887 0.6944 0.000 0.228 0.772
#> SRR1201711 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201714 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201713 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201710 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201719 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201718 3 0.6309 0.2542 0.000 0.496 0.504
#> SRR1201721 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201720 3 0.4887 0.6944 0.000 0.228 0.772
#> SRR1201723 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201722 3 0.5450 0.6859 0.012 0.228 0.760
#> SRR1201725 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201724 2 0.6079 0.1521 0.000 0.612 0.388
#> SRR1201726 3 0.4887 0.6944 0.000 0.228 0.772
#> SRR1201727 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201731 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201730 3 0.4887 0.6944 0.000 0.228 0.772
#> SRR1201734 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201733 2 0.0000 0.7507 0.000 1.000 0.000
#> SRR1201736 2 0.4062 0.6348 0.164 0.836 0.000
#> SRR1201737 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201739 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201738 2 0.0000 0.7507 0.000 1.000 0.000
#> SRR1201742 2 0.0000 0.7507 0.000 1.000 0.000
#> SRR1201743 2 0.5882 0.6990 0.000 0.652 0.348
#> SRR1201745 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201744 1 0.6095 0.4340 0.608 0.392 0.000
#> SRR1201749 2 0.3686 0.6629 0.140 0.860 0.000
#> SRR1201750 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201752 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201751 3 0.4974 0.6898 0.000 0.236 0.764
#> SRR1201754 2 0.6180 0.5788 0.000 0.584 0.416
#> SRR1201753 2 0.0747 0.7446 0.016 0.984 0.000
#> SRR1201758 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1201759 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201760 3 0.6318 0.5566 0.008 0.356 0.636
#> SRR1201761 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201763 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201762 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1201764 3 0.6647 0.3204 0.396 0.012 0.592
#> SRR1201766 2 0.0000 0.7507 0.000 1.000 0.000
#> SRR1201768 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201769 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201767 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201770 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201771 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201772 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201773 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201774 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201786 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201784 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201785 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201778 2 0.1753 0.7282 0.048 0.952 0.000
#> SRR1201779 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201781 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201780 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201783 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201782 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201798 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201797 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201796 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201795 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201799 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201794 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201793 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201792 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201791 2 0.0000 0.7507 0.000 1.000 0.000
#> SRR1201807 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201808 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201803 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201804 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201805 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201806 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201801 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201802 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201800 2 0.0000 0.7507 0.000 1.000 0.000
#> SRR1201814 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201816 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201815 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201819 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201820 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201813 2 0.0237 0.7526 0.000 0.996 0.004
#> SRR1201817 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201818 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1201825 2 0.9411 -0.0105 0.380 0.444 0.176
#> SRR1201827 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201828 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201826 3 0.4887 0.6944 0.000 0.228 0.772
#> SRR1201829 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201830 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201831 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201832 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201833 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201865 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201866 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201867 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201861 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201862 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201863 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201859 2 0.6045 0.2212 0.380 0.620 0.000
#> SRR1201864 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201860 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201873 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201871 3 0.6105 0.6600 0.024 0.252 0.724
#> SRR1201872 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201980 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201979 3 0.5254 0.6702 0.000 0.264 0.736
#> SRR1201982 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201981 3 0.6816 0.3149 0.012 0.472 0.516
#> SRR1201998 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1201996 2 0.4178 0.6235 0.000 0.828 0.172
#> SRR1201997 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1202005 2 0.6215 0.5526 0.000 0.572 0.428
#> SRR1202006 3 0.6095 0.0313 0.000 0.392 0.608
#> SRR1202088 3 0.4504 0.6290 0.000 0.196 0.804
#> SRR1202087 2 0.6140 0.5451 0.000 0.596 0.404
#> SRR1202093 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1202092 2 0.0000 0.7507 0.000 1.000 0.000
#> SRR1202288 2 0.0892 0.7430 0.020 0.980 0.000
#> SRR1202289 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1202299 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1202298 2 0.0000 0.7507 0.000 1.000 0.000
#> SRR1202303 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1202372 2 0.4887 0.8396 0.000 0.772 0.228
#> SRR1202371 2 0.4399 0.6034 0.188 0.812 0.000
#> SRR1202563 2 0.6045 0.2212 0.380 0.620 0.000
#> SRR1202565 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1202564 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1202649 2 0.6305 -0.1207 0.484 0.516 0.000
#> SRR1202650 2 0.0237 0.7493 0.004 0.996 0.000
#> SRR1202651 3 0.6168 -0.0595 0.000 0.412 0.588
#> SRR1202843 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1202845 2 0.4291 0.6126 0.000 0.820 0.180
#> SRR1202847 3 0.4346 0.6501 0.000 0.184 0.816
#> SRR1202846 3 0.4346 0.6501 0.000 0.184 0.816
#> SRR1202945 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203009 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203008 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203010 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203132 3 0.0000 0.8961 0.000 0.000 1.000
#> SRR1203131 3 0.6897 0.3970 0.016 0.436 0.548
#> SRR1203133 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203827 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203828 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203842 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203843 1 0.0000 0.9934 1.000 0.000 0.000
#> SRR1203845 3 0.6307 -0.3422 0.000 0.488 0.512
#> SRR1203844 2 0.0000 0.7507 0.000 1.000 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201590 4 0.0336 0.9709 0.000 0.008 0.000 0.992
#> SRR1201593 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201592 4 0.0817 0.9617 0.000 0.024 0.000 0.976
#> SRR1201617 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201616 4 0.1211 0.9494 0.000 0.040 0.000 0.960
#> SRR1201619 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201618 4 0.0188 0.9723 0.000 0.004 0.000 0.996
#> SRR1201620 4 0.0469 0.9690 0.000 0.012 0.000 0.988
#> SRR1201621 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201623 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201622 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1201624 1 0.0336 0.9883 0.992 0.000 0.008 0.000
#> SRR1201625 3 0.0000 0.9633 0.000 0.000 1.000 0.000
#> SRR1201626 1 0.0336 0.9883 0.992 0.000 0.008 0.000
#> SRR1201627 3 0.0000 0.9633 0.000 0.000 1.000 0.000
#> SRR1201628 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1201629 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201630 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1201631 3 0.4605 0.4923 0.000 0.336 0.664 0.000
#> SRR1201641 3 0.1211 0.9419 0.000 0.040 0.960 0.000
#> SRR1201640 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1201643 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1201644 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201661 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1201662 3 0.4431 0.5620 0.000 0.304 0.696 0.000
#> SRR1201663 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1201664 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201665 4 0.0188 0.9723 0.000 0.004 0.000 0.996
#> SRR1201666 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201667 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201668 4 0.0188 0.9723 0.000 0.004 0.000 0.996
#> SRR1201670 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201669 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201673 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201672 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201671 4 0.0188 0.9723 0.000 0.004 0.000 0.996
#> SRR1201677 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201676 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201675 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201674 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201678 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201682 2 0.0336 0.9391 0.000 0.992 0.008 0.000
#> SRR1201683 2 0.0336 0.9391 0.000 0.992 0.008 0.000
#> SRR1201680 2 0.0336 0.9391 0.000 0.992 0.008 0.000
#> SRR1201681 2 0.0336 0.9391 0.000 0.992 0.008 0.000
#> SRR1201679 4 0.0592 0.9671 0.000 0.016 0.000 0.984
#> SRR1201686 3 0.0000 0.9633 0.000 0.000 1.000 0.000
#> SRR1201687 3 0.0000 0.9633 0.000 0.000 1.000 0.000
#> SRR1201688 3 0.0000 0.9633 0.000 0.000 1.000 0.000
#> SRR1201689 3 0.0000 0.9633 0.000 0.000 1.000 0.000
#> SRR1201685 1 0.4776 0.3833 0.624 0.000 0.000 0.376
#> SRR1201692 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201691 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201690 4 0.0336 0.9687 0.000 0.000 0.008 0.992
#> SRR1201696 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201695 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201694 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201693 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201697 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201698 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201700 4 0.1637 0.9255 0.000 0.000 0.060 0.940
#> SRR1201708 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201707 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201706 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201702 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201705 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201701 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201704 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201703 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201716 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201715 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201717 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201712 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201709 4 0.0188 0.9711 0.000 0.000 0.004 0.996
#> SRR1201711 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201714 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201713 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201710 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201719 3 0.0592 0.9629 0.000 0.016 0.984 0.000
#> SRR1201718 4 0.2773 0.8987 0.000 0.028 0.072 0.900
#> SRR1201721 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201720 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1201723 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201722 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1201725 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201724 4 0.2021 0.9312 0.000 0.024 0.040 0.936
#> SRR1201726 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1201727 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201731 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201730 4 0.3837 0.7166 0.000 0.000 0.224 0.776
#> SRR1201734 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201733 4 0.0469 0.9691 0.000 0.012 0.000 0.988
#> SRR1201736 4 0.0188 0.9723 0.000 0.004 0.000 0.996
#> SRR1201737 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201739 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201738 2 0.4730 0.4102 0.000 0.636 0.000 0.364
#> SRR1201742 4 0.0188 0.9723 0.000 0.004 0.000 0.996
#> SRR1201743 2 0.0336 0.9391 0.000 0.992 0.008 0.000
#> SRR1201745 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201744 4 0.4220 0.6730 0.248 0.004 0.000 0.748
#> SRR1201749 4 0.0188 0.9723 0.000 0.004 0.000 0.996
#> SRR1201750 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201752 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201751 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1201754 2 0.4382 0.5687 0.000 0.704 0.296 0.000
#> SRR1201753 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1201758 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1201759 3 0.0000 0.9633 0.000 0.000 1.000 0.000
#> SRR1201760 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1201761 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201763 3 0.0000 0.9633 0.000 0.000 1.000 0.000
#> SRR1201762 1 0.0336 0.9883 0.992 0.000 0.008 0.000
#> SRR1201764 3 0.7088 0.1337 0.392 0.000 0.480 0.128
#> SRR1201766 4 0.1637 0.9326 0.000 0.060 0.000 0.940
#> SRR1201768 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201769 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201767 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201770 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201771 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201772 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201773 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201774 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201786 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201784 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201785 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201778 4 0.0188 0.9723 0.000 0.004 0.000 0.996
#> SRR1201779 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201781 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201780 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201783 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201782 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201798 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201797 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201796 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201795 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201799 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201794 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201793 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201792 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201791 2 0.3569 0.7276 0.000 0.804 0.000 0.196
#> SRR1201807 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201808 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201803 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201804 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201805 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201806 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201801 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201802 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201800 4 0.2647 0.8656 0.000 0.120 0.000 0.880
#> SRR1201814 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201816 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201815 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201819 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201820 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201813 2 0.4564 0.4929 0.000 0.672 0.000 0.328
#> SRR1201817 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201818 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1201825 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1201827 3 0.0000 0.9633 0.000 0.000 1.000 0.000
#> SRR1201828 3 0.0000 0.9633 0.000 0.000 1.000 0.000
#> SRR1201826 4 0.2149 0.9016 0.000 0.000 0.088 0.912
#> SRR1201829 3 0.0000 0.9633 0.000 0.000 1.000 0.000
#> SRR1201830 3 0.0000 0.9633 0.000 0.000 1.000 0.000
#> SRR1201831 3 0.0000 0.9633 0.000 0.000 1.000 0.000
#> SRR1201832 3 0.0000 0.9633 0.000 0.000 1.000 0.000
#> SRR1201833 3 0.0000 0.9633 0.000 0.000 1.000 0.000
#> SRR1201865 3 0.0592 0.9631 0.000 0.016 0.984 0.000
#> SRR1201866 3 0.0592 0.9631 0.000 0.016 0.984 0.000
#> SRR1201867 3 0.0592 0.9631 0.000 0.016 0.984 0.000
#> SRR1201861 3 0.0592 0.9631 0.000 0.016 0.984 0.000
#> SRR1201862 3 0.0592 0.9631 0.000 0.016 0.984 0.000
#> SRR1201863 3 0.0592 0.9631 0.000 0.016 0.984 0.000
#> SRR1201859 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1201864 3 0.0592 0.9631 0.000 0.016 0.984 0.000
#> SRR1201860 3 0.0592 0.9631 0.000 0.016 0.984 0.000
#> SRR1201873 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201871 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1201872 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201980 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201979 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1201982 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201981 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1201998 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1201996 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1201997 3 0.0592 0.9629 0.000 0.016 0.984 0.000
#> SRR1202005 2 0.4817 0.3650 0.000 0.612 0.388 0.000
#> SRR1202006 2 0.4998 0.0442 0.000 0.512 0.488 0.000
#> SRR1202088 3 0.4994 0.0543 0.000 0.480 0.520 0.000
#> SRR1202087 2 0.6464 0.4011 0.000 0.596 0.096 0.308
#> SRR1202093 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1202092 4 0.1792 0.9241 0.000 0.068 0.000 0.932
#> SRR1202288 4 0.0188 0.9723 0.000 0.004 0.000 0.996
#> SRR1202289 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1202299 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1202298 2 0.4543 0.5123 0.000 0.676 0.000 0.324
#> SRR1202303 3 0.0000 0.9633 0.000 0.000 1.000 0.000
#> SRR1202372 2 0.0188 0.9423 0.000 0.996 0.004 0.000
#> SRR1202371 4 0.0188 0.9723 0.000 0.004 0.000 0.996
#> SRR1202563 4 0.0592 0.9628 0.016 0.000 0.000 0.984
#> SRR1202565 3 0.1389 0.9341 0.000 0.048 0.952 0.000
#> SRR1202564 3 0.1474 0.9300 0.000 0.052 0.948 0.000
#> SRR1202649 4 0.1557 0.9272 0.056 0.000 0.000 0.944
#> SRR1202650 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1202651 2 0.4888 0.2994 0.000 0.588 0.412 0.000
#> SRR1202843 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1202845 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1202847 3 0.4406 0.5701 0.000 0.300 0.700 0.000
#> SRR1202846 3 0.4406 0.5701 0.000 0.300 0.700 0.000
#> SRR1202945 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203132 3 0.0336 0.9678 0.000 0.008 0.992 0.000
#> SRR1203131 4 0.0000 0.9728 0.000 0.000 0.000 1.000
#> SRR1203133 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203827 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203828 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203842 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203843 1 0.0000 0.9947 1.000 0.000 0.000 0.000
#> SRR1203845 2 0.4843 0.3441 0.000 0.604 0.396 0.000
#> SRR1203844 4 0.1940 0.9121 0.000 0.076 0.000 0.924
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201590 5 0.0404 0.8509 0.000 0.000 0.000 0.012 0.988
#> SRR1201593 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201592 5 0.1741 0.8458 0.000 0.040 0.000 0.024 0.936
#> SRR1201617 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201616 5 0.2172 0.8228 0.000 0.076 0.000 0.016 0.908
#> SRR1201619 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1201618 5 0.0703 0.8567 0.000 0.000 0.000 0.024 0.976
#> SRR1201620 5 0.1082 0.8452 0.000 0.028 0.000 0.008 0.964
#> SRR1201621 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1201623 3 0.0290 0.8444 0.000 0.000 0.992 0.008 0.000
#> SRR1201622 5 0.3452 0.8527 0.000 0.000 0.000 0.244 0.756
#> SRR1201624 1 0.3966 0.5529 0.664 0.000 0.000 0.336 0.000
#> SRR1201625 4 0.4262 0.8639 0.000 0.000 0.440 0.560 0.000
#> SRR1201626 1 0.2471 0.8477 0.864 0.000 0.000 0.136 0.000
#> SRR1201627 4 0.4262 0.8639 0.000 0.000 0.440 0.560 0.000
#> SRR1201628 5 0.3480 0.8462 0.000 0.000 0.000 0.248 0.752
#> SRR1201629 3 0.0000 0.8459 0.000 0.000 1.000 0.000 0.000
#> SRR1201630 5 0.3274 0.8560 0.000 0.000 0.000 0.220 0.780
#> SRR1201631 3 0.3844 0.5454 0.000 0.164 0.792 0.044 0.000
#> SRR1201641 3 0.1469 0.8113 0.000 0.016 0.948 0.036 0.000
#> SRR1201640 5 0.4003 0.8455 0.000 0.008 0.008 0.244 0.740
#> SRR1201643 5 0.3508 0.8465 0.000 0.000 0.000 0.252 0.748
#> SRR1201644 3 0.0963 0.8248 0.000 0.000 0.964 0.036 0.000
#> SRR1201661 5 0.3616 0.8502 0.000 0.004 0.004 0.224 0.768
#> SRR1201662 3 0.3531 0.5898 0.000 0.148 0.816 0.036 0.000
#> SRR1201663 5 0.3949 0.8208 0.000 0.000 0.000 0.332 0.668
#> SRR1201664 3 0.1671 0.7940 0.000 0.000 0.924 0.076 0.000
#> SRR1201665 5 0.0609 0.8523 0.000 0.000 0.000 0.020 0.980
#> SRR1201666 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201667 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201668 5 0.2732 0.8323 0.000 0.000 0.000 0.160 0.840
#> SRR1201670 3 0.3551 0.5306 0.000 0.008 0.772 0.220 0.000
#> SRR1201669 3 0.3551 0.5306 0.000 0.008 0.772 0.220 0.000
#> SRR1201673 3 0.0451 0.8426 0.000 0.008 0.988 0.004 0.000
#> SRR1201672 3 0.0451 0.8426 0.000 0.008 0.988 0.004 0.000
#> SRR1201671 5 0.2179 0.8666 0.000 0.000 0.000 0.112 0.888
#> SRR1201677 3 0.0451 0.8426 0.000 0.008 0.988 0.004 0.000
#> SRR1201676 3 0.0451 0.8426 0.000 0.008 0.988 0.004 0.000
#> SRR1201675 3 0.0451 0.8426 0.000 0.008 0.988 0.004 0.000
#> SRR1201674 3 0.0451 0.8426 0.000 0.008 0.988 0.004 0.000
#> SRR1201678 3 0.0451 0.8426 0.000 0.008 0.988 0.004 0.000
#> SRR1201682 2 0.2293 0.8573 0.000 0.900 0.084 0.016 0.000
#> SRR1201683 2 0.2293 0.8573 0.000 0.900 0.084 0.016 0.000
#> SRR1201680 2 0.2293 0.8573 0.000 0.900 0.084 0.016 0.000
#> SRR1201681 2 0.2293 0.8573 0.000 0.900 0.084 0.016 0.000
#> SRR1201679 5 0.2144 0.8352 0.000 0.068 0.000 0.020 0.912
#> SRR1201686 3 0.3534 0.4573 0.000 0.000 0.744 0.256 0.000
#> SRR1201687 3 0.3534 0.4573 0.000 0.000 0.744 0.256 0.000
#> SRR1201688 3 0.3534 0.4573 0.000 0.000 0.744 0.256 0.000
#> SRR1201689 3 0.3534 0.4573 0.000 0.000 0.744 0.256 0.000
#> SRR1201685 1 0.5708 0.2395 0.556 0.000 0.000 0.096 0.348
#> SRR1201692 3 0.0000 0.8459 0.000 0.000 1.000 0.000 0.000
#> SRR1201691 3 0.0000 0.8459 0.000 0.000 1.000 0.000 0.000
#> SRR1201690 5 0.4193 0.8415 0.000 0.000 0.024 0.256 0.720
#> SRR1201696 3 0.0000 0.8459 0.000 0.000 1.000 0.000 0.000
#> SRR1201695 3 0.0000 0.8459 0.000 0.000 1.000 0.000 0.000
#> SRR1201694 3 0.0000 0.8459 0.000 0.000 1.000 0.000 0.000
#> SRR1201693 3 0.0000 0.8459 0.000 0.000 1.000 0.000 0.000
#> SRR1201697 3 0.0000 0.8459 0.000 0.000 1.000 0.000 0.000
#> SRR1201698 3 0.0000 0.8459 0.000 0.000 1.000 0.000 0.000
#> SRR1201700 5 0.6365 0.5603 0.000 0.000 0.212 0.272 0.516
#> SRR1201708 3 0.0162 0.8453 0.000 0.000 0.996 0.004 0.000
#> SRR1201707 3 0.0162 0.8453 0.000 0.000 0.996 0.004 0.000
#> SRR1201706 3 0.0162 0.8453 0.000 0.000 0.996 0.004 0.000
#> SRR1201702 3 0.0162 0.8453 0.000 0.000 0.996 0.004 0.000
#> SRR1201705 3 0.0162 0.8453 0.000 0.000 0.996 0.004 0.000
#> SRR1201701 3 0.0162 0.8453 0.000 0.000 0.996 0.004 0.000
#> SRR1201704 3 0.0162 0.8453 0.000 0.000 0.996 0.004 0.000
#> SRR1201703 3 0.0162 0.8453 0.000 0.000 0.996 0.004 0.000
#> SRR1201716 3 0.0290 0.8453 0.000 0.000 0.992 0.008 0.000
#> SRR1201715 3 0.0290 0.8453 0.000 0.000 0.992 0.008 0.000
#> SRR1201717 3 0.0290 0.8453 0.000 0.000 0.992 0.008 0.000
#> SRR1201712 3 0.0290 0.8453 0.000 0.000 0.992 0.008 0.000
#> SRR1201709 5 0.4697 0.8013 0.000 0.000 0.036 0.304 0.660
#> SRR1201711 3 0.0290 0.8453 0.000 0.000 0.992 0.008 0.000
#> SRR1201714 3 0.0290 0.8453 0.000 0.000 0.992 0.008 0.000
#> SRR1201713 3 0.0290 0.8453 0.000 0.000 0.992 0.008 0.000
#> SRR1201710 3 0.0290 0.8453 0.000 0.000 0.992 0.008 0.000
#> SRR1201719 3 0.1124 0.8221 0.000 0.004 0.960 0.036 0.000
#> SRR1201718 5 0.7459 0.3442 0.000 0.040 0.292 0.252 0.416
#> SRR1201721 3 0.0000 0.8459 0.000 0.000 1.000 0.000 0.000
#> SRR1201720 5 0.4854 0.8091 0.000 0.000 0.060 0.260 0.680
#> SRR1201723 3 0.1270 0.8012 0.000 0.000 0.948 0.052 0.000
#> SRR1201722 5 0.3876 0.8252 0.000 0.000 0.000 0.316 0.684
#> SRR1201725 3 0.0794 0.8302 0.000 0.000 0.972 0.028 0.000
#> SRR1201724 5 0.6691 0.5774 0.000 0.016 0.200 0.260 0.524
#> SRR1201726 5 0.4668 0.8185 0.000 0.000 0.044 0.272 0.684
#> SRR1201727 3 0.0162 0.8453 0.000 0.000 0.996 0.004 0.000
#> SRR1201731 3 0.0000 0.8459 0.000 0.000 1.000 0.000 0.000
#> SRR1201730 3 0.6698 -0.2485 0.000 0.000 0.412 0.248 0.340
#> SRR1201734 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201733 5 0.1012 0.8474 0.000 0.012 0.000 0.020 0.968
#> SRR1201736 5 0.0963 0.8449 0.000 0.000 0.000 0.036 0.964
#> SRR1201737 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201739 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201738 2 0.4538 0.4024 0.000 0.620 0.000 0.016 0.364
#> SRR1201742 5 0.1282 0.8615 0.000 0.004 0.000 0.044 0.952
#> SRR1201743 2 0.1914 0.8826 0.000 0.924 0.060 0.016 0.000
#> SRR1201745 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1201744 5 0.3321 0.7310 0.136 0.000 0.000 0.032 0.832
#> SRR1201749 5 0.0794 0.8467 0.000 0.000 0.000 0.028 0.972
#> SRR1201750 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1201752 3 0.0000 0.8459 0.000 0.000 1.000 0.000 0.000
#> SRR1201751 5 0.3561 0.8473 0.000 0.000 0.000 0.260 0.740
#> SRR1201754 2 0.5059 0.1737 0.000 0.548 0.416 0.036 0.000
#> SRR1201753 5 0.2074 0.8654 0.000 0.000 0.000 0.104 0.896
#> SRR1201758 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1201759 3 0.3534 0.4573 0.000 0.000 0.744 0.256 0.000
#> SRR1201760 5 0.3242 0.8548 0.000 0.000 0.000 0.216 0.784
#> SRR1201761 3 0.0000 0.8459 0.000 0.000 1.000 0.000 0.000
#> SRR1201763 4 0.4262 0.8639 0.000 0.000 0.440 0.560 0.000
#> SRR1201762 1 0.2516 0.8430 0.860 0.000 0.000 0.140 0.000
#> SRR1201764 4 0.5911 0.4347 0.204 0.000 0.108 0.656 0.032
#> SRR1201766 5 0.2873 0.7774 0.000 0.128 0.000 0.016 0.856
#> SRR1201768 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201769 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201767 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201770 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201771 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201772 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201773 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201774 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201786 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201784 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201785 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201778 5 0.0703 0.8461 0.000 0.000 0.000 0.024 0.976
#> SRR1201779 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201781 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201780 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201783 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201782 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201798 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201797 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201796 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201795 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201799 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201794 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201793 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201792 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1201791 2 0.4067 0.5546 0.000 0.692 0.000 0.008 0.300
#> SRR1201807 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1201808 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1201803 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1201804 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1201805 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1201806 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1201801 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1201802 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1201800 5 0.2864 0.7581 0.000 0.136 0.000 0.012 0.852
#> SRR1201814 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1201816 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1201815 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1201819 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1201820 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1201813 2 0.4812 0.3831 0.000 0.600 0.000 0.028 0.372
#> SRR1201817 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1201818 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1201825 5 0.2329 0.8574 0.000 0.000 0.000 0.124 0.876
#> SRR1201827 4 0.4268 0.8644 0.000 0.000 0.444 0.556 0.000
#> SRR1201828 4 0.4268 0.8644 0.000 0.000 0.444 0.556 0.000
#> SRR1201826 4 0.4527 0.1409 0.000 0.000 0.064 0.732 0.204
#> SRR1201829 4 0.4268 0.8644 0.000 0.000 0.444 0.556 0.000
#> SRR1201830 4 0.4268 0.8644 0.000 0.000 0.444 0.556 0.000
#> SRR1201831 4 0.4268 0.8644 0.000 0.000 0.444 0.556 0.000
#> SRR1201832 4 0.4268 0.8644 0.000 0.000 0.444 0.556 0.000
#> SRR1201833 4 0.4268 0.8644 0.000 0.000 0.444 0.556 0.000
#> SRR1201865 3 0.2516 0.7341 0.000 0.000 0.860 0.140 0.000
#> SRR1201866 3 0.2516 0.7341 0.000 0.000 0.860 0.140 0.000
#> SRR1201867 3 0.2516 0.7341 0.000 0.000 0.860 0.140 0.000
#> SRR1201861 3 0.2516 0.7341 0.000 0.000 0.860 0.140 0.000
#> SRR1201862 3 0.2516 0.7341 0.000 0.000 0.860 0.140 0.000
#> SRR1201863 3 0.2516 0.7341 0.000 0.000 0.860 0.140 0.000
#> SRR1201859 5 0.1792 0.8429 0.000 0.000 0.000 0.084 0.916
#> SRR1201864 3 0.2516 0.7341 0.000 0.000 0.860 0.140 0.000
#> SRR1201860 3 0.2516 0.7341 0.000 0.000 0.860 0.140 0.000
#> SRR1201873 3 0.0404 0.8427 0.000 0.000 0.988 0.012 0.000
#> SRR1201871 5 0.3336 0.8580 0.000 0.000 0.000 0.228 0.772
#> SRR1201872 3 0.0404 0.8427 0.000 0.000 0.988 0.012 0.000
#> SRR1201980 3 0.0000 0.8459 0.000 0.000 1.000 0.000 0.000
#> SRR1201979 5 0.3750 0.8520 0.000 0.000 0.012 0.232 0.756
#> SRR1201982 3 0.0609 0.8357 0.000 0.000 0.980 0.020 0.000
#> SRR1201981 5 0.3508 0.8465 0.000 0.000 0.000 0.252 0.748
#> SRR1201998 3 0.0963 0.8248 0.000 0.000 0.964 0.036 0.000
#> SRR1201996 5 0.4089 0.8416 0.000 0.004 0.016 0.244 0.736
#> SRR1201997 3 0.1124 0.8221 0.000 0.004 0.960 0.036 0.000
#> SRR1202005 3 0.6618 -0.0304 0.000 0.380 0.456 0.152 0.012
#> SRR1202006 3 0.4786 0.2474 0.000 0.308 0.652 0.040 0.000
#> SRR1202088 2 0.4359 0.1812 0.000 0.584 0.412 0.004 0.000
#> SRR1202087 2 0.7143 0.3715 0.000 0.568 0.168 0.104 0.160
#> SRR1202093 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1202092 5 0.2416 0.8090 0.000 0.100 0.000 0.012 0.888
#> SRR1202288 5 0.0609 0.8468 0.000 0.000 0.000 0.020 0.980
#> SRR1202289 2 0.0000 0.9404 0.000 1.000 0.000 0.000 0.000
#> SRR1202299 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1202298 2 0.4861 0.2369 0.000 0.548 0.000 0.024 0.428
#> SRR1202303 4 0.4262 0.8639 0.000 0.000 0.440 0.560 0.000
#> SRR1202372 2 0.0510 0.9379 0.000 0.984 0.000 0.016 0.000
#> SRR1202371 5 0.0609 0.8467 0.000 0.000 0.000 0.020 0.980
#> SRR1202563 5 0.2233 0.8491 0.016 0.000 0.000 0.080 0.904
#> SRR1202565 3 0.1836 0.7932 0.000 0.032 0.932 0.036 0.000
#> SRR1202564 3 0.1836 0.7932 0.000 0.032 0.932 0.036 0.000
#> SRR1202649 5 0.3176 0.8155 0.064 0.000 0.000 0.080 0.856
#> SRR1202650 5 0.1851 0.8650 0.000 0.000 0.000 0.088 0.912
#> SRR1202651 3 0.4969 0.1440 0.000 0.376 0.588 0.036 0.000
#> SRR1202843 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1202845 5 0.3607 0.8462 0.000 0.000 0.004 0.244 0.752
#> SRR1202847 3 0.3531 0.5898 0.000 0.148 0.816 0.036 0.000
#> SRR1202846 3 0.3531 0.5898 0.000 0.148 0.816 0.036 0.000
#> SRR1202945 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.0162 0.8446 0.000 0.000 0.996 0.004 0.000
#> SRR1203131 5 0.3508 0.8479 0.000 0.000 0.000 0.252 0.748
#> SRR1203133 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203827 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203828 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203842 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203843 1 0.0000 0.9863 1.000 0.000 0.000 0.000 0.000
#> SRR1203845 3 0.5142 0.1048 0.000 0.392 0.564 0.044 0.000
#> SRR1203844 5 0.5624 0.7466 0.000 0.140 0.004 0.208 0.648
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201590 6 0.4253 0.6921 0.000 0.016 0.000 0.000 0.460 0.524
#> SRR1201593 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201592 6 0.5472 0.6032 0.000 0.124 0.000 0.000 0.412 0.464
#> SRR1201617 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201616 6 0.5651 0.5850 0.000 0.152 0.000 0.000 0.400 0.448
#> SRR1201619 2 0.2649 0.8772 0.000 0.880 0.016 0.028 0.000 0.076
#> SRR1201618 5 0.4096 -0.6310 0.000 0.000 0.000 0.008 0.508 0.484
#> SRR1201620 6 0.4609 0.6938 0.000 0.040 0.000 0.000 0.420 0.540
#> SRR1201621 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1201623 3 0.0891 0.8010 0.000 0.000 0.968 0.008 0.000 0.024
#> SRR1201622 5 0.4808 0.2711 0.000 0.000 0.000 0.092 0.636 0.272
#> SRR1201624 4 0.4184 -0.0294 0.484 0.000 0.000 0.504 0.000 0.012
#> SRR1201625 4 0.3151 0.8796 0.000 0.000 0.252 0.748 0.000 0.000
#> SRR1201626 1 0.3240 0.6606 0.752 0.000 0.000 0.244 0.000 0.004
#> SRR1201627 4 0.3151 0.8796 0.000 0.000 0.252 0.748 0.000 0.000
#> SRR1201628 5 0.1615 0.5482 0.000 0.000 0.004 0.004 0.928 0.064
#> SRR1201629 3 0.0436 0.8038 0.000 0.000 0.988 0.004 0.004 0.004
#> SRR1201630 5 0.2320 0.4514 0.000 0.000 0.000 0.004 0.864 0.132
#> SRR1201631 3 0.5064 0.6398 0.000 0.064 0.744 0.036 0.100 0.056
#> SRR1201641 3 0.3763 0.7087 0.000 0.004 0.816 0.032 0.100 0.048
#> SRR1201640 5 0.2377 0.5407 0.000 0.000 0.024 0.008 0.892 0.076
#> SRR1201643 5 0.0862 0.5478 0.000 0.000 0.004 0.008 0.972 0.016
#> SRR1201644 3 0.3189 0.7269 0.000 0.000 0.844 0.020 0.100 0.036
#> SRR1201661 5 0.1845 0.5374 0.000 0.000 0.008 0.004 0.916 0.072
#> SRR1201662 3 0.4823 0.6550 0.000 0.056 0.760 0.032 0.100 0.052
#> SRR1201663 5 0.5181 0.3789 0.000 0.000 0.004 0.112 0.604 0.280
#> SRR1201664 3 0.3551 0.6715 0.000 0.000 0.792 0.060 0.000 0.148
#> SRR1201665 6 0.4089 0.6786 0.000 0.008 0.000 0.000 0.468 0.524
#> SRR1201666 2 0.0405 0.9033 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1201667 2 0.0405 0.9033 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1201668 6 0.4893 0.3296 0.000 0.000 0.000 0.076 0.340 0.584
#> SRR1201670 3 0.5553 0.4474 0.000 0.024 0.624 0.168 0.000 0.184
#> SRR1201669 3 0.5553 0.4474 0.000 0.024 0.624 0.168 0.000 0.184
#> SRR1201673 3 0.1296 0.7961 0.000 0.004 0.952 0.012 0.000 0.032
#> SRR1201672 3 0.1296 0.7961 0.000 0.004 0.952 0.012 0.000 0.032
#> SRR1201671 5 0.4152 -0.1690 0.000 0.000 0.000 0.032 0.664 0.304
#> SRR1201677 3 0.1296 0.7961 0.000 0.004 0.952 0.012 0.000 0.032
#> SRR1201676 3 0.1296 0.7961 0.000 0.004 0.952 0.012 0.000 0.032
#> SRR1201675 3 0.1296 0.7961 0.000 0.004 0.952 0.012 0.000 0.032
#> SRR1201674 3 0.1296 0.7961 0.000 0.004 0.952 0.012 0.000 0.032
#> SRR1201678 3 0.1296 0.7961 0.000 0.004 0.952 0.012 0.000 0.032
#> SRR1201682 2 0.4596 0.7048 0.000 0.728 0.172 0.028 0.000 0.072
#> SRR1201683 2 0.4596 0.7048 0.000 0.728 0.172 0.028 0.000 0.072
#> SRR1201680 2 0.4596 0.7048 0.000 0.728 0.172 0.028 0.000 0.072
#> SRR1201681 2 0.4596 0.7048 0.000 0.728 0.172 0.028 0.000 0.072
#> SRR1201679 5 0.5830 -0.5084 0.000 0.160 0.000 0.004 0.420 0.416
#> SRR1201686 3 0.5375 0.3776 0.000 0.000 0.588 0.208 0.000 0.204
#> SRR1201687 3 0.5375 0.3776 0.000 0.000 0.588 0.208 0.000 0.204
#> SRR1201688 3 0.5375 0.3776 0.000 0.000 0.588 0.208 0.000 0.204
#> SRR1201689 3 0.5375 0.3776 0.000 0.000 0.588 0.208 0.000 0.204
#> SRR1201685 1 0.6706 -0.2212 0.400 0.000 0.000 0.056 0.176 0.368
#> SRR1201692 3 0.0000 0.8049 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201691 3 0.0000 0.8049 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201690 5 0.2545 0.5601 0.000 0.000 0.020 0.024 0.888 0.068
#> SRR1201696 3 0.0000 0.8049 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201695 3 0.0000 0.8049 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201694 3 0.0000 0.8049 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201693 3 0.0000 0.8049 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201697 3 0.0000 0.8049 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201698 3 0.0000 0.8049 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201700 5 0.5568 0.3587 0.000 0.000 0.244 0.036 0.616 0.104
#> SRR1201708 3 0.0405 0.8040 0.000 0.000 0.988 0.008 0.000 0.004
#> SRR1201707 3 0.0405 0.8040 0.000 0.000 0.988 0.008 0.000 0.004
#> SRR1201706 3 0.0405 0.8040 0.000 0.000 0.988 0.008 0.000 0.004
#> SRR1201702 3 0.0405 0.8040 0.000 0.000 0.988 0.008 0.000 0.004
#> SRR1201705 3 0.0405 0.8040 0.000 0.000 0.988 0.008 0.000 0.004
#> SRR1201701 3 0.0405 0.8040 0.000 0.000 0.988 0.008 0.000 0.004
#> SRR1201704 3 0.0405 0.8040 0.000 0.000 0.988 0.008 0.000 0.004
#> SRR1201703 3 0.0405 0.8040 0.000 0.000 0.988 0.008 0.000 0.004
#> SRR1201716 3 0.0891 0.8005 0.000 0.000 0.968 0.008 0.000 0.024
#> SRR1201715 3 0.0891 0.8005 0.000 0.000 0.968 0.008 0.000 0.024
#> SRR1201717 3 0.0891 0.8005 0.000 0.000 0.968 0.008 0.000 0.024
#> SRR1201712 3 0.0891 0.8005 0.000 0.000 0.968 0.008 0.000 0.024
#> SRR1201709 5 0.6048 0.3836 0.000 0.000 0.088 0.100 0.596 0.216
#> SRR1201711 3 0.0891 0.8005 0.000 0.000 0.968 0.008 0.000 0.024
#> SRR1201714 3 0.0891 0.8005 0.000 0.000 0.968 0.008 0.000 0.024
#> SRR1201713 3 0.0891 0.8005 0.000 0.000 0.968 0.008 0.000 0.024
#> SRR1201710 3 0.0891 0.8005 0.000 0.000 0.968 0.008 0.000 0.024
#> SRR1201719 3 0.3406 0.7188 0.000 0.000 0.832 0.024 0.100 0.044
#> SRR1201718 5 0.4654 0.3964 0.000 0.004 0.212 0.012 0.704 0.068
#> SRR1201721 3 0.0508 0.8023 0.000 0.000 0.984 0.004 0.000 0.012
#> SRR1201720 5 0.2728 0.5457 0.000 0.000 0.080 0.008 0.872 0.040
#> SRR1201723 3 0.1341 0.7927 0.000 0.000 0.948 0.024 0.000 0.028
#> SRR1201722 5 0.5041 0.3931 0.000 0.000 0.008 0.088 0.624 0.280
#> SRR1201725 3 0.3069 0.7315 0.000 0.000 0.852 0.020 0.096 0.032
#> SRR1201724 5 0.4333 0.4232 0.000 0.004 0.188 0.008 0.736 0.064
#> SRR1201726 5 0.3155 0.5382 0.000 0.000 0.068 0.004 0.840 0.088
#> SRR1201727 3 0.0291 0.8040 0.000 0.000 0.992 0.004 0.000 0.004
#> SRR1201731 3 0.1148 0.7983 0.000 0.000 0.960 0.016 0.004 0.020
#> SRR1201730 5 0.4217 0.3549 0.000 0.000 0.296 0.008 0.672 0.024
#> SRR1201734 2 0.0146 0.9055 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1201733 6 0.4666 0.7009 0.000 0.044 0.000 0.000 0.420 0.536
#> SRR1201736 6 0.3930 0.6994 0.000 0.000 0.000 0.004 0.420 0.576
#> SRR1201737 2 0.0405 0.9033 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1201739 2 0.0146 0.9055 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1201738 2 0.4669 0.5245 0.000 0.692 0.000 0.004 0.108 0.196
#> SRR1201742 5 0.4172 -0.3651 0.000 0.008 0.000 0.008 0.608 0.376
#> SRR1201743 2 0.4075 0.7778 0.000 0.784 0.116 0.028 0.000 0.072
#> SRR1201745 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1201744 6 0.5435 0.5306 0.120 0.000 0.000 0.004 0.332 0.544
#> SRR1201749 6 0.3950 0.7010 0.000 0.000 0.000 0.004 0.432 0.564
#> SRR1201750 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1201752 3 0.0000 0.8049 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201751 5 0.4324 0.4851 0.000 0.000 0.032 0.076 0.764 0.128
#> SRR1201754 3 0.6478 0.0869 0.000 0.396 0.448 0.036 0.024 0.096
#> SRR1201753 5 0.3738 -0.0583 0.000 0.004 0.000 0.004 0.680 0.312
#> SRR1201758 1 0.0405 0.9739 0.988 0.000 0.000 0.004 0.000 0.008
#> SRR1201759 3 0.5328 0.3915 0.000 0.000 0.596 0.200 0.000 0.204
#> SRR1201760 5 0.2147 0.5188 0.000 0.000 0.000 0.020 0.896 0.084
#> SRR1201761 3 0.0291 0.8040 0.000 0.000 0.992 0.004 0.000 0.004
#> SRR1201763 4 0.3151 0.8796 0.000 0.000 0.252 0.748 0.000 0.000
#> SRR1201762 1 0.3373 0.6483 0.744 0.000 0.000 0.248 0.000 0.008
#> SRR1201764 4 0.4676 0.6274 0.064 0.000 0.056 0.768 0.092 0.020
#> SRR1201766 6 0.5748 0.5535 0.000 0.176 0.000 0.000 0.360 0.464
#> SRR1201768 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201769 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201767 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201770 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201771 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201772 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201773 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201774 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201786 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201784 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201785 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201778 6 0.3930 0.7109 0.000 0.004 0.000 0.000 0.420 0.576
#> SRR1201779 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201781 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201780 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201783 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201782 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201798 2 0.0146 0.9055 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1201797 2 0.0146 0.9055 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1201796 2 0.0146 0.9055 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1201795 2 0.0146 0.9055 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1201799 2 0.0146 0.9055 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1201794 2 0.0146 0.9055 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1201793 2 0.0146 0.9055 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1201792 2 0.0146 0.9055 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1201791 2 0.4781 0.4662 0.000 0.672 0.000 0.000 0.140 0.188
#> SRR1201807 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1201808 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1201803 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1201804 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1201805 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1201806 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1201801 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1201802 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1201800 6 0.5601 0.5607 0.000 0.136 0.000 0.004 0.348 0.512
#> SRR1201814 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1201816 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1201815 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1201819 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1201820 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1201813 2 0.6003 0.3049 0.000 0.532 0.000 0.020 0.180 0.268
#> SRR1201817 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1201818 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1201825 5 0.4681 -0.3358 0.000 0.000 0.000 0.044 0.524 0.432
#> SRR1201827 4 0.3175 0.8797 0.000 0.000 0.256 0.744 0.000 0.000
#> SRR1201828 4 0.3175 0.8797 0.000 0.000 0.256 0.744 0.000 0.000
#> SRR1201826 4 0.5300 0.4908 0.000 0.000 0.068 0.672 0.192 0.068
#> SRR1201829 4 0.3175 0.8797 0.000 0.000 0.256 0.744 0.000 0.000
#> SRR1201830 4 0.3175 0.8797 0.000 0.000 0.256 0.744 0.000 0.000
#> SRR1201831 4 0.3175 0.8797 0.000 0.000 0.256 0.744 0.000 0.000
#> SRR1201832 4 0.3175 0.8797 0.000 0.000 0.256 0.744 0.000 0.000
#> SRR1201833 4 0.3175 0.8797 0.000 0.000 0.256 0.744 0.000 0.000
#> SRR1201865 3 0.5958 0.4948 0.000 0.000 0.596 0.164 0.048 0.192
#> SRR1201866 3 0.5958 0.4948 0.000 0.000 0.596 0.164 0.048 0.192
#> SRR1201867 3 0.5958 0.4948 0.000 0.000 0.596 0.164 0.048 0.192
#> SRR1201861 3 0.5958 0.4948 0.000 0.000 0.596 0.164 0.048 0.192
#> SRR1201862 3 0.5958 0.4948 0.000 0.000 0.596 0.164 0.048 0.192
#> SRR1201863 3 0.5958 0.4948 0.000 0.000 0.596 0.164 0.048 0.192
#> SRR1201859 6 0.4756 0.5395 0.000 0.000 0.000 0.052 0.408 0.540
#> SRR1201864 3 0.5958 0.4948 0.000 0.000 0.596 0.164 0.048 0.192
#> SRR1201860 3 0.5958 0.4948 0.000 0.000 0.596 0.164 0.048 0.192
#> SRR1201873 3 0.1049 0.7971 0.000 0.000 0.960 0.008 0.000 0.032
#> SRR1201871 5 0.4371 0.2323 0.000 0.000 0.000 0.052 0.664 0.284
#> SRR1201872 3 0.1049 0.7971 0.000 0.000 0.960 0.008 0.000 0.032
#> SRR1201980 3 0.0520 0.8024 0.000 0.000 0.984 0.008 0.000 0.008
#> SRR1201979 5 0.2669 0.5464 0.000 0.000 0.004 0.024 0.864 0.108
#> SRR1201982 3 0.2478 0.7546 0.000 0.000 0.888 0.012 0.076 0.024
#> SRR1201981 5 0.0972 0.5444 0.000 0.000 0.000 0.008 0.964 0.028
#> SRR1201998 3 0.3189 0.7269 0.000 0.000 0.844 0.020 0.100 0.036
#> SRR1201996 5 0.2731 0.5325 0.000 0.000 0.044 0.012 0.876 0.068
#> SRR1201997 3 0.3406 0.7188 0.000 0.000 0.832 0.024 0.100 0.044
#> SRR1202005 3 0.7501 0.0287 0.000 0.168 0.376 0.036 0.348 0.072
#> SRR1202006 3 0.5894 0.5304 0.000 0.140 0.668 0.036 0.100 0.056
#> SRR1202088 2 0.4646 0.2564 0.000 0.580 0.380 0.008 0.000 0.032
#> SRR1202087 2 0.7359 0.2083 0.000 0.488 0.148 0.072 0.052 0.240
#> SRR1202093 2 0.0508 0.9017 0.000 0.984 0.000 0.004 0.000 0.012
#> SRR1202092 6 0.5859 0.5862 0.000 0.152 0.000 0.008 0.380 0.460
#> SRR1202288 6 0.4039 0.7108 0.000 0.008 0.000 0.000 0.424 0.568
#> SRR1202289 2 0.0000 0.9059 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1202299 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1202298 2 0.6091 0.1062 0.000 0.492 0.000 0.016 0.188 0.304
#> SRR1202303 4 0.3151 0.8796 0.000 0.000 0.252 0.748 0.000 0.000
#> SRR1202372 2 0.2009 0.8912 0.000 0.908 0.000 0.024 0.000 0.068
#> SRR1202371 6 0.3823 0.7019 0.000 0.000 0.000 0.000 0.436 0.564
#> SRR1202563 6 0.5403 0.5591 0.048 0.000 0.000 0.032 0.428 0.492
#> SRR1202565 3 0.3708 0.7271 0.000 0.028 0.832 0.036 0.024 0.080
#> SRR1202564 3 0.3708 0.7271 0.000 0.028 0.832 0.036 0.024 0.080
#> SRR1202649 6 0.5940 0.4616 0.096 0.000 0.000 0.036 0.388 0.480
#> SRR1202650 5 0.3862 -0.3828 0.000 0.000 0.000 0.004 0.608 0.388
#> SRR1202651 3 0.6175 0.3411 0.000 0.280 0.568 0.036 0.024 0.092
#> SRR1202843 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202845 5 0.1075 0.5469 0.000 0.000 0.000 0.000 0.952 0.048
#> SRR1202847 3 0.4762 0.6593 0.000 0.056 0.764 0.032 0.100 0.048
#> SRR1202846 3 0.4762 0.6593 0.000 0.056 0.764 0.032 0.100 0.048
#> SRR1202945 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0146 0.9811 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203008 1 0.0146 0.9811 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203010 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.1364 0.7905 0.000 0.000 0.952 0.012 0.020 0.016
#> SRR1203131 5 0.1812 0.5164 0.000 0.000 0.000 0.008 0.912 0.080
#> SRR1203133 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203827 1 0.0146 0.9811 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203828 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203842 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203843 1 0.0000 0.9846 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203845 3 0.6529 0.3915 0.000 0.224 0.580 0.036 0.100 0.060
#> SRR1203844 5 0.3870 0.4072 0.000 0.072 0.000 0.012 0.788 0.128
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["CV", "pam"]
# you can also extract it by
# res = res_list["CV:pam"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'CV' method.
#> Subgroups are detected by 'pam' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 5.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 0.987 0.994 0.3915 0.611 0.611
#> 3 3 0.965 0.946 0.974 0.6797 0.730 0.558
#> 4 4 0.829 0.844 0.866 0.0821 0.867 0.633
#> 5 5 0.926 0.929 0.964 0.0570 0.974 0.901
#> 6 6 0.814 0.750 0.820 0.0335 0.948 0.792
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 5
#> attr(,"optional")
#> [1] 2 3
There is also optional best \(k\) = 2 3 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0.0000 0.995 0.000 1.000
#> SRR1201590 2 0.0000 0.995 0.000 1.000
#> SRR1201593 2 0.0000 0.995 0.000 1.000
#> SRR1201592 2 0.0000 0.995 0.000 1.000
#> SRR1201617 2 0.0000 0.995 0.000 1.000
#> SRR1201616 2 0.0000 0.995 0.000 1.000
#> SRR1201619 2 0.0000 0.995 0.000 1.000
#> SRR1201618 2 0.0000 0.995 0.000 1.000
#> SRR1201620 2 0.0000 0.995 0.000 1.000
#> SRR1201621 2 0.0000 0.995 0.000 1.000
#> SRR1201623 2 0.0000 0.995 0.000 1.000
#> SRR1201622 2 0.0000 0.995 0.000 1.000
#> SRR1201624 2 0.0000 0.995 0.000 1.000
#> SRR1201625 2 0.0000 0.995 0.000 1.000
#> SRR1201626 1 0.8909 0.558 0.692 0.308
#> SRR1201627 2 0.0000 0.995 0.000 1.000
#> SRR1201628 2 0.0000 0.995 0.000 1.000
#> SRR1201629 2 0.0000 0.995 0.000 1.000
#> SRR1201630 2 0.0000 0.995 0.000 1.000
#> SRR1201631 2 0.0000 0.995 0.000 1.000
#> SRR1201641 2 0.0000 0.995 0.000 1.000
#> SRR1201640 2 0.0000 0.995 0.000 1.000
#> SRR1201643 2 0.0000 0.995 0.000 1.000
#> SRR1201644 2 0.0000 0.995 0.000 1.000
#> SRR1201661 2 0.0000 0.995 0.000 1.000
#> SRR1201662 2 0.0000 0.995 0.000 1.000
#> SRR1201663 2 0.0000 0.995 0.000 1.000
#> SRR1201664 2 0.0000 0.995 0.000 1.000
#> SRR1201665 2 0.0000 0.995 0.000 1.000
#> SRR1201666 2 0.0000 0.995 0.000 1.000
#> SRR1201667 2 0.0000 0.995 0.000 1.000
#> SRR1201668 2 0.0000 0.995 0.000 1.000
#> SRR1201670 2 0.0000 0.995 0.000 1.000
#> SRR1201669 2 0.0000 0.995 0.000 1.000
#> SRR1201673 2 0.0000 0.995 0.000 1.000
#> SRR1201672 2 0.0000 0.995 0.000 1.000
#> SRR1201671 2 0.0000 0.995 0.000 1.000
#> SRR1201677 2 0.0000 0.995 0.000 1.000
#> SRR1201676 2 0.0000 0.995 0.000 1.000
#> SRR1201675 2 0.0000 0.995 0.000 1.000
#> SRR1201674 2 0.0000 0.995 0.000 1.000
#> SRR1201678 2 0.0000 0.995 0.000 1.000
#> SRR1201682 2 0.0000 0.995 0.000 1.000
#> SRR1201683 2 0.0000 0.995 0.000 1.000
#> SRR1201680 2 0.0000 0.995 0.000 1.000
#> SRR1201681 2 0.0000 0.995 0.000 1.000
#> SRR1201679 2 0.0000 0.995 0.000 1.000
#> SRR1201686 2 0.0000 0.995 0.000 1.000
#> SRR1201687 2 0.0000 0.995 0.000 1.000
#> SRR1201688 2 0.0000 0.995 0.000 1.000
#> SRR1201689 2 0.0000 0.995 0.000 1.000
#> SRR1201685 2 0.7056 0.765 0.192 0.808
#> SRR1201692 2 0.0000 0.995 0.000 1.000
#> SRR1201691 2 0.0000 0.995 0.000 1.000
#> SRR1201690 2 0.0000 0.995 0.000 1.000
#> SRR1201696 2 0.0000 0.995 0.000 1.000
#> SRR1201695 2 0.0000 0.995 0.000 1.000
#> SRR1201694 2 0.0000 0.995 0.000 1.000
#> SRR1201693 2 0.0000 0.995 0.000 1.000
#> SRR1201697 2 0.0000 0.995 0.000 1.000
#> SRR1201698 2 0.0000 0.995 0.000 1.000
#> SRR1201700 2 0.0000 0.995 0.000 1.000
#> SRR1201708 2 0.0000 0.995 0.000 1.000
#> SRR1201707 2 0.0000 0.995 0.000 1.000
#> SRR1201706 2 0.0000 0.995 0.000 1.000
#> SRR1201702 2 0.0000 0.995 0.000 1.000
#> SRR1201705 2 0.0000 0.995 0.000 1.000
#> SRR1201701 2 0.0000 0.995 0.000 1.000
#> SRR1201704 2 0.0000 0.995 0.000 1.000
#> SRR1201703 2 0.0000 0.995 0.000 1.000
#> SRR1201716 2 0.0000 0.995 0.000 1.000
#> SRR1201715 2 0.0000 0.995 0.000 1.000
#> SRR1201717 2 0.0000 0.995 0.000 1.000
#> SRR1201712 2 0.0000 0.995 0.000 1.000
#> SRR1201709 2 0.0000 0.995 0.000 1.000
#> SRR1201711 2 0.0000 0.995 0.000 1.000
#> SRR1201714 2 0.0000 0.995 0.000 1.000
#> SRR1201713 2 0.0000 0.995 0.000 1.000
#> SRR1201710 2 0.0000 0.995 0.000 1.000
#> SRR1201719 2 0.0000 0.995 0.000 1.000
#> SRR1201718 2 0.0000 0.995 0.000 1.000
#> SRR1201721 2 0.0000 0.995 0.000 1.000
#> SRR1201720 2 0.0000 0.995 0.000 1.000
#> SRR1201723 2 0.0000 0.995 0.000 1.000
#> SRR1201722 2 0.0000 0.995 0.000 1.000
#> SRR1201725 2 0.0000 0.995 0.000 1.000
#> SRR1201724 2 0.0000 0.995 0.000 1.000
#> SRR1201726 2 0.0000 0.995 0.000 1.000
#> SRR1201727 2 0.0000 0.995 0.000 1.000
#> SRR1201731 2 0.0000 0.995 0.000 1.000
#> SRR1201730 2 0.0000 0.995 0.000 1.000
#> SRR1201734 2 0.0000 0.995 0.000 1.000
#> SRR1201733 2 0.0000 0.995 0.000 1.000
#> SRR1201736 2 0.0000 0.995 0.000 1.000
#> SRR1201737 2 0.0000 0.995 0.000 1.000
#> SRR1201739 2 0.0000 0.995 0.000 1.000
#> SRR1201738 2 0.0000 0.995 0.000 1.000
#> SRR1201742 2 0.0000 0.995 0.000 1.000
#> SRR1201743 2 0.0000 0.995 0.000 1.000
#> SRR1201745 2 0.0000 0.995 0.000 1.000
#> SRR1201744 2 0.7219 0.753 0.200 0.800
#> SRR1201749 2 0.0000 0.995 0.000 1.000
#> SRR1201750 2 0.0000 0.995 0.000 1.000
#> SRR1201752 2 0.0000 0.995 0.000 1.000
#> SRR1201751 2 0.0000 0.995 0.000 1.000
#> SRR1201754 2 0.0000 0.995 0.000 1.000
#> SRR1201753 2 0.0000 0.995 0.000 1.000
#> SRR1201758 1 0.7219 0.748 0.800 0.200
#> SRR1201759 2 0.0000 0.995 0.000 1.000
#> SRR1201760 2 0.0000 0.995 0.000 1.000
#> SRR1201761 2 0.0000 0.995 0.000 1.000
#> SRR1201763 2 0.0000 0.995 0.000 1.000
#> SRR1201762 2 0.8499 0.623 0.276 0.724
#> SRR1201764 2 0.0000 0.995 0.000 1.000
#> SRR1201766 2 0.0000 0.995 0.000 1.000
#> SRR1201768 2 0.0000 0.995 0.000 1.000
#> SRR1201769 2 0.0000 0.995 0.000 1.000
#> SRR1201767 2 0.0000 0.995 0.000 1.000
#> SRR1201770 2 0.0000 0.995 0.000 1.000
#> SRR1201771 2 0.0000 0.995 0.000 1.000
#> SRR1201772 2 0.0000 0.995 0.000 1.000
#> SRR1201773 2 0.0000 0.995 0.000 1.000
#> SRR1201774 2 0.0000 0.995 0.000 1.000
#> SRR1201786 2 0.0000 0.995 0.000 1.000
#> SRR1201784 2 0.0000 0.995 0.000 1.000
#> SRR1201785 2 0.0000 0.995 0.000 1.000
#> SRR1201778 2 0.0376 0.991 0.004 0.996
#> SRR1201779 2 0.0000 0.995 0.000 1.000
#> SRR1201781 2 0.0000 0.995 0.000 1.000
#> SRR1201780 2 0.0000 0.995 0.000 1.000
#> SRR1201783 2 0.0000 0.995 0.000 1.000
#> SRR1201782 2 0.0000 0.995 0.000 1.000
#> SRR1201798 2 0.0000 0.995 0.000 1.000
#> SRR1201797 2 0.0000 0.995 0.000 1.000
#> SRR1201796 2 0.0000 0.995 0.000 1.000
#> SRR1201795 2 0.0000 0.995 0.000 1.000
#> SRR1201799 2 0.0000 0.995 0.000 1.000
#> SRR1201794 2 0.0000 0.995 0.000 1.000
#> SRR1201793 2 0.0000 0.995 0.000 1.000
#> SRR1201792 2 0.0000 0.995 0.000 1.000
#> SRR1201791 2 0.0000 0.995 0.000 1.000
#> SRR1201807 2 0.0000 0.995 0.000 1.000
#> SRR1201808 2 0.0000 0.995 0.000 1.000
#> SRR1201803 2 0.0000 0.995 0.000 1.000
#> SRR1201804 2 0.0000 0.995 0.000 1.000
#> SRR1201805 2 0.0000 0.995 0.000 1.000
#> SRR1201806 2 0.0000 0.995 0.000 1.000
#> SRR1201801 2 0.0000 0.995 0.000 1.000
#> SRR1201802 2 0.0000 0.995 0.000 1.000
#> SRR1201800 2 0.0000 0.995 0.000 1.000
#> SRR1201814 2 0.0000 0.995 0.000 1.000
#> SRR1201816 2 0.0000 0.995 0.000 1.000
#> SRR1201815 2 0.0000 0.995 0.000 1.000
#> SRR1201819 2 0.0000 0.995 0.000 1.000
#> SRR1201820 2 0.0000 0.995 0.000 1.000
#> SRR1201813 2 0.0000 0.995 0.000 1.000
#> SRR1201817 2 0.0000 0.995 0.000 1.000
#> SRR1201818 2 0.0000 0.995 0.000 1.000
#> SRR1201825 2 0.3114 0.938 0.056 0.944
#> SRR1201827 2 0.0000 0.995 0.000 1.000
#> SRR1201828 2 0.0000 0.995 0.000 1.000
#> SRR1201826 2 0.0000 0.995 0.000 1.000
#> SRR1201829 2 0.0000 0.995 0.000 1.000
#> SRR1201830 2 0.0000 0.995 0.000 1.000
#> SRR1201831 2 0.0000 0.995 0.000 1.000
#> SRR1201832 2 0.0000 0.995 0.000 1.000
#> SRR1201833 2 0.0000 0.995 0.000 1.000
#> SRR1201865 2 0.0000 0.995 0.000 1.000
#> SRR1201866 2 0.0000 0.995 0.000 1.000
#> SRR1201867 2 0.0000 0.995 0.000 1.000
#> SRR1201861 2 0.0000 0.995 0.000 1.000
#> SRR1201862 2 0.0000 0.995 0.000 1.000
#> SRR1201863 2 0.0000 0.995 0.000 1.000
#> SRR1201859 2 0.0376 0.991 0.004 0.996
#> SRR1201864 2 0.0000 0.995 0.000 1.000
#> SRR1201860 2 0.0000 0.995 0.000 1.000
#> SRR1201873 2 0.0000 0.995 0.000 1.000
#> SRR1201871 2 0.0000 0.995 0.000 1.000
#> SRR1201872 2 0.0000 0.995 0.000 1.000
#> SRR1201980 2 0.0000 0.995 0.000 1.000
#> SRR1201979 2 0.0000 0.995 0.000 1.000
#> SRR1201982 2 0.0000 0.995 0.000 1.000
#> SRR1201981 2 0.0000 0.995 0.000 1.000
#> SRR1201998 2 0.0000 0.995 0.000 1.000
#> SRR1201996 2 0.0000 0.995 0.000 1.000
#> SRR1201997 2 0.0000 0.995 0.000 1.000
#> SRR1202005 2 0.0000 0.995 0.000 1.000
#> SRR1202006 2 0.0000 0.995 0.000 1.000
#> SRR1202088 2 0.0000 0.995 0.000 1.000
#> SRR1202087 2 0.0000 0.995 0.000 1.000
#> SRR1202093 2 0.0000 0.995 0.000 1.000
#> SRR1202092 2 0.0000 0.995 0.000 1.000
#> SRR1202288 2 0.0000 0.995 0.000 1.000
#> SRR1202289 2 0.0000 0.995 0.000 1.000
#> SRR1202299 2 0.0000 0.995 0.000 1.000
#> SRR1202298 2 0.0000 0.995 0.000 1.000
#> SRR1202303 2 0.0000 0.995 0.000 1.000
#> SRR1202372 2 0.0000 0.995 0.000 1.000
#> SRR1202371 2 0.0376 0.991 0.004 0.996
#> SRR1202563 2 0.5629 0.848 0.132 0.868
#> SRR1202565 2 0.0000 0.995 0.000 1.000
#> SRR1202564 2 0.0000 0.995 0.000 1.000
#> SRR1202649 2 0.7219 0.753 0.200 0.800
#> SRR1202650 2 0.0000 0.995 0.000 1.000
#> SRR1202651 2 0.0000 0.995 0.000 1.000
#> SRR1202843 1 0.0000 0.993 1.000 0.000
#> SRR1202844 1 0.0000 0.993 1.000 0.000
#> SRR1202845 2 0.0000 0.995 0.000 1.000
#> SRR1202847 2 0.0000 0.995 0.000 1.000
#> SRR1202846 2 0.0000 0.995 0.000 1.000
#> SRR1202945 1 0.0000 0.993 1.000 0.000
#> SRR1202949 1 0.0000 0.993 1.000 0.000
#> SRR1202977 1 0.0000 0.993 1.000 0.000
#> SRR1202978 1 0.0000 0.993 1.000 0.000
#> SRR1202979 1 0.0000 0.993 1.000 0.000
#> SRR1202990 1 0.0000 0.993 1.000 0.000
#> SRR1202999 1 0.0000 0.993 1.000 0.000
#> SRR1203005 1 0.0000 0.993 1.000 0.000
#> SRR1203006 1 0.0000 0.993 1.000 0.000
#> SRR1203007 1 0.0000 0.993 1.000 0.000
#> SRR1203009 1 0.0000 0.993 1.000 0.000
#> SRR1203008 1 0.0000 0.993 1.000 0.000
#> SRR1203010 1 0.0000 0.993 1.000 0.000
#> SRR1203011 1 0.0000 0.993 1.000 0.000
#> SRR1203025 1 0.0000 0.993 1.000 0.000
#> SRR1203026 1 0.0000 0.993 1.000 0.000
#> SRR1203027 1 0.0000 0.993 1.000 0.000
#> SRR1203061 1 0.0000 0.993 1.000 0.000
#> SRR1203089 1 0.0000 0.993 1.000 0.000
#> SRR1203125 1 0.0000 0.993 1.000 0.000
#> SRR1203128 1 0.0000 0.993 1.000 0.000
#> SRR1203129 1 0.0000 0.993 1.000 0.000
#> SRR1203130 1 0.0000 0.993 1.000 0.000
#> SRR1203132 2 0.0000 0.995 0.000 1.000
#> SRR1203131 2 0.0000 0.995 0.000 1.000
#> SRR1203133 1 0.0000 0.993 1.000 0.000
#> SRR1203138 1 0.0000 0.993 1.000 0.000
#> SRR1203760 1 0.0000 0.993 1.000 0.000
#> SRR1203761 1 0.0000 0.993 1.000 0.000
#> SRR1203770 1 0.0000 0.993 1.000 0.000
#> SRR1203771 1 0.0000 0.993 1.000 0.000
#> SRR1203772 1 0.0000 0.993 1.000 0.000
#> SRR1203773 1 0.0000 0.993 1.000 0.000
#> SRR1203774 1 0.0000 0.993 1.000 0.000
#> SRR1203775 1 0.0000 0.993 1.000 0.000
#> SRR1203800 1 0.0000 0.993 1.000 0.000
#> SRR1203801 1 0.0000 0.993 1.000 0.000
#> SRR1203802 1 0.0000 0.993 1.000 0.000
#> SRR1203803 1 0.0000 0.993 1.000 0.000
#> SRR1203804 1 0.0000 0.993 1.000 0.000
#> SRR1203805 1 0.0000 0.993 1.000 0.000
#> SRR1203806 1 0.0000 0.993 1.000 0.000
#> SRR1203807 1 0.0000 0.993 1.000 0.000
#> SRR1203808 1 0.0000 0.993 1.000 0.000
#> SRR1203811 1 0.0000 0.993 1.000 0.000
#> SRR1203812 1 0.0000 0.993 1.000 0.000
#> SRR1203813 1 0.0000 0.993 1.000 0.000
#> SRR1203814 1 0.0000 0.993 1.000 0.000
#> SRR1203815 1 0.0000 0.993 1.000 0.000
#> SRR1203816 1 0.0000 0.993 1.000 0.000
#> SRR1203817 1 0.0000 0.993 1.000 0.000
#> SRR1203818 1 0.0000 0.993 1.000 0.000
#> SRR1203819 1 0.0000 0.993 1.000 0.000
#> SRR1203822 1 0.0000 0.993 1.000 0.000
#> SRR1203823 1 0.0000 0.993 1.000 0.000
#> SRR1203824 1 0.0000 0.993 1.000 0.000
#> SRR1203825 1 0.0000 0.993 1.000 0.000
#> SRR1203826 1 0.0000 0.993 1.000 0.000
#> SRR1203827 1 0.0000 0.993 1.000 0.000
#> SRR1203828 1 0.0000 0.993 1.000 0.000
#> SRR1203829 1 0.0000 0.993 1.000 0.000
#> SRR1203830 1 0.0000 0.993 1.000 0.000
#> SRR1203831 1 0.0000 0.993 1.000 0.000
#> SRR1203832 1 0.0000 0.993 1.000 0.000
#> SRR1203833 1 0.0000 0.993 1.000 0.000
#> SRR1203834 1 0.0000 0.993 1.000 0.000
#> SRR1203835 1 0.0000 0.993 1.000 0.000
#> SRR1203836 1 0.0000 0.993 1.000 0.000
#> SRR1203837 1 0.0000 0.993 1.000 0.000
#> SRR1203838 1 0.0000 0.993 1.000 0.000
#> SRR1203839 1 0.0000 0.993 1.000 0.000
#> SRR1203842 1 0.0000 0.993 1.000 0.000
#> SRR1203843 1 0.0000 0.993 1.000 0.000
#> SRR1203845 2 0.0000 0.995 0.000 1.000
#> SRR1203844 2 0.0000 0.995 0.000 1.000
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201590 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201593 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201592 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201617 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201616 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201619 3 0.1529 0.9436 0.000 0.040 0.960
#> SRR1201618 3 0.2165 0.9238 0.000 0.064 0.936
#> SRR1201620 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201621 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201623 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201622 2 0.3192 0.8692 0.000 0.888 0.112
#> SRR1201624 2 0.0661 0.9664 0.004 0.988 0.008
#> SRR1201625 2 0.0424 0.9652 0.000 0.992 0.008
#> SRR1201626 1 0.6967 0.5354 0.668 0.044 0.288
#> SRR1201627 2 0.0424 0.9652 0.000 0.992 0.008
#> SRR1201628 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201629 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201630 3 0.1031 0.9556 0.000 0.024 0.976
#> SRR1201631 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201641 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201640 2 0.3941 0.8151 0.000 0.844 0.156
#> SRR1201643 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201644 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201661 3 0.6215 0.2804 0.000 0.428 0.572
#> SRR1201662 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201663 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201664 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201665 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201666 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201667 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201668 3 0.1964 0.9292 0.000 0.056 0.944
#> SRR1201670 2 0.1289 0.9496 0.000 0.968 0.032
#> SRR1201669 2 0.1411 0.9462 0.000 0.964 0.036
#> SRR1201673 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201672 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201671 2 0.4796 0.7214 0.000 0.780 0.220
#> SRR1201677 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201676 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201675 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201674 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201678 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201682 3 0.2165 0.9227 0.000 0.064 0.936
#> SRR1201683 3 0.2878 0.8925 0.000 0.096 0.904
#> SRR1201680 3 0.2066 0.9269 0.000 0.060 0.940
#> SRR1201681 3 0.2878 0.8930 0.000 0.096 0.904
#> SRR1201679 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201686 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201687 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201688 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201689 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201685 2 0.8043 0.5668 0.228 0.644 0.128
#> SRR1201692 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201691 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201690 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201696 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201695 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201694 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201693 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201697 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201698 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201700 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201708 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201707 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201706 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201702 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201705 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201701 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201704 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201703 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201716 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201715 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201717 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201712 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201709 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201711 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201714 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201713 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201710 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201719 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201718 2 0.0237 0.9694 0.000 0.996 0.004
#> SRR1201721 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201720 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201723 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201722 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201725 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201724 3 0.6305 0.0948 0.000 0.484 0.516
#> SRR1201726 2 0.1860 0.9305 0.000 0.948 0.052
#> SRR1201727 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201731 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201730 2 0.1643 0.9378 0.000 0.956 0.044
#> SRR1201734 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201733 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201736 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201737 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201739 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201738 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201742 3 0.1289 0.9495 0.000 0.032 0.968
#> SRR1201743 3 0.1753 0.9370 0.000 0.048 0.952
#> SRR1201745 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201744 3 0.3879 0.8106 0.152 0.000 0.848
#> SRR1201749 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201750 3 0.0592 0.9640 0.000 0.012 0.988
#> SRR1201752 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201751 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201754 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201753 3 0.2878 0.8942 0.000 0.096 0.904
#> SRR1201758 1 0.4555 0.7407 0.800 0.200 0.000
#> SRR1201759 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201760 2 0.1031 0.9561 0.000 0.976 0.024
#> SRR1201761 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201763 2 0.0424 0.9652 0.000 0.992 0.008
#> SRR1201762 2 0.8014 0.5191 0.268 0.628 0.104
#> SRR1201764 2 0.5178 0.6658 0.000 0.744 0.256
#> SRR1201766 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201768 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201769 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201767 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201770 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201771 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201772 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201773 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201774 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201786 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201784 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201785 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201778 3 0.0475 0.9624 0.004 0.004 0.992
#> SRR1201779 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201781 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201780 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201783 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201782 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201798 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201797 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201796 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201795 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201799 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201794 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201793 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201792 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201791 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201807 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201808 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201803 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201804 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201805 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201806 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201801 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201802 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201800 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201814 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201816 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201815 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201819 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201820 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201813 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201817 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201818 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1201825 2 0.4845 0.8390 0.052 0.844 0.104
#> SRR1201827 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201828 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201826 2 0.0592 0.9653 0.000 0.988 0.012
#> SRR1201829 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201830 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201831 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201832 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201833 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201865 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201866 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201867 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201861 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201862 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201863 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201859 3 0.3500 0.8667 0.004 0.116 0.880
#> SRR1201864 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201860 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1201873 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201871 2 0.0424 0.9681 0.000 0.992 0.008
#> SRR1201872 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201980 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201979 2 0.0892 0.9594 0.000 0.980 0.020
#> SRR1201982 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201981 2 0.3340 0.8591 0.000 0.880 0.120
#> SRR1201998 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1201996 2 0.6274 0.1501 0.000 0.544 0.456
#> SRR1201997 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1202005 2 0.5016 0.6767 0.000 0.760 0.240
#> SRR1202006 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1202088 3 0.0592 0.9640 0.000 0.012 0.988
#> SRR1202087 3 0.0747 0.9613 0.000 0.016 0.984
#> SRR1202093 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1202092 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1202288 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1202289 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1202299 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1202298 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1202303 2 0.0424 0.9652 0.000 0.992 0.008
#> SRR1202372 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1202371 3 0.0424 0.9666 0.000 0.008 0.992
#> SRR1202563 3 0.7147 0.7014 0.124 0.156 0.720
#> SRR1202565 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1202564 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1202649 3 0.4784 0.7425 0.200 0.004 0.796
#> SRR1202650 3 0.5465 0.6151 0.000 0.288 0.712
#> SRR1202651 2 0.0237 0.9705 0.000 0.996 0.004
#> SRR1202843 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1202845 3 0.6204 0.2747 0.000 0.424 0.576
#> SRR1202847 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1202846 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1202945 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203009 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203008 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203010 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203132 2 0.0000 0.9712 0.000 1.000 0.000
#> SRR1203131 2 0.1411 0.9453 0.000 0.964 0.036
#> SRR1203133 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203827 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203828 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203842 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203843 1 0.0000 0.9927 1.000 0.000 0.000
#> SRR1203845 2 0.6140 0.3063 0.000 0.596 0.404
#> SRR1203844 3 0.0592 0.9640 0.000 0.012 0.988
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201590 2 0.1022 0.9307 0.000 0.968 0.000 0.032
#> SRR1201593 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201592 2 0.4193 0.6151 0.000 0.732 0.000 0.268
#> SRR1201617 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201616 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201619 2 0.1302 0.9132 0.000 0.956 0.000 0.044
#> SRR1201618 4 0.4866 0.3080 0.000 0.404 0.000 0.596
#> SRR1201620 2 0.4164 0.6217 0.000 0.736 0.000 0.264
#> SRR1201621 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201623 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201622 4 0.2081 0.6995 0.000 0.084 0.000 0.916
#> SRR1201624 4 0.0376 0.7346 0.004 0.004 0.000 0.992
#> SRR1201625 3 0.0000 0.3848 0.000 0.000 1.000 0.000
#> SRR1201626 1 0.6397 0.5424 0.652 0.184 0.000 0.164
#> SRR1201627 3 0.0000 0.3848 0.000 0.000 1.000 0.000
#> SRR1201628 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201629 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201630 4 0.4985 0.1133 0.000 0.468 0.000 0.532
#> SRR1201631 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201641 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201640 4 0.2216 0.6949 0.000 0.092 0.000 0.908
#> SRR1201643 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201644 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201661 4 0.4040 0.5842 0.000 0.248 0.000 0.752
#> SRR1201662 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201663 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201664 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201665 2 0.2469 0.8525 0.000 0.892 0.000 0.108
#> SRR1201666 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201667 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201668 2 0.4008 0.6604 0.000 0.756 0.000 0.244
#> SRR1201670 3 0.5768 0.8910 0.000 0.028 0.516 0.456
#> SRR1201669 3 0.5846 0.8836 0.000 0.032 0.516 0.452
#> SRR1201673 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201672 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201671 4 0.2760 0.6695 0.000 0.128 0.000 0.872
#> SRR1201677 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201676 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201675 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201674 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201678 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201682 2 0.0817 0.9341 0.000 0.976 0.000 0.024
#> SRR1201683 2 0.1211 0.9179 0.000 0.960 0.000 0.040
#> SRR1201680 2 0.1022 0.9265 0.000 0.968 0.000 0.032
#> SRR1201681 2 0.1211 0.9181 0.000 0.960 0.000 0.040
#> SRR1201679 2 0.1637 0.9049 0.000 0.940 0.000 0.060
#> SRR1201686 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201687 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201688 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201689 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201685 4 0.5022 0.5128 0.220 0.044 0.000 0.736
#> SRR1201692 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201691 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201690 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201696 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201695 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201694 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201693 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201697 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201698 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201700 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201708 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201707 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201706 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201702 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201705 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201701 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201704 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201703 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201716 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201715 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201717 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201712 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201709 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201711 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201714 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201713 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201710 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201719 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201718 4 0.0188 0.7353 0.000 0.004 0.000 0.996
#> SRR1201721 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201720 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201723 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201722 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201725 4 0.4955 -0.8025 0.000 0.000 0.444 0.556
#> SRR1201724 4 0.3726 0.6084 0.000 0.212 0.000 0.788
#> SRR1201726 4 0.1474 0.7166 0.000 0.052 0.000 0.948
#> SRR1201727 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201731 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201730 4 0.1389 0.7173 0.000 0.048 0.000 0.952
#> SRR1201734 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201733 2 0.2011 0.8836 0.000 0.920 0.000 0.080
#> SRR1201736 2 0.4804 0.3523 0.000 0.616 0.000 0.384
#> SRR1201737 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201739 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201738 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201742 4 0.4972 0.1577 0.000 0.456 0.000 0.544
#> SRR1201743 2 0.1637 0.8938 0.000 0.940 0.000 0.060
#> SRR1201745 2 0.0188 0.9520 0.000 0.996 0.000 0.004
#> SRR1201744 4 0.7169 0.2491 0.148 0.344 0.000 0.508
#> SRR1201749 4 0.4996 0.0545 0.000 0.484 0.000 0.516
#> SRR1201750 2 0.0469 0.9450 0.000 0.988 0.000 0.012
#> SRR1201752 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201751 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201754 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201753 4 0.4804 0.3601 0.000 0.384 0.000 0.616
#> SRR1201758 1 0.3610 0.7402 0.800 0.000 0.000 0.200
#> SRR1201759 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201760 4 0.0707 0.7311 0.000 0.020 0.000 0.980
#> SRR1201761 4 0.0188 0.7302 0.000 0.000 0.004 0.996
#> SRR1201763 3 0.0000 0.3848 0.000 0.000 1.000 0.000
#> SRR1201762 4 0.4996 0.5367 0.192 0.056 0.000 0.752
#> SRR1201764 4 0.3444 0.6293 0.000 0.184 0.000 0.816
#> SRR1201766 2 0.0469 0.9464 0.000 0.988 0.000 0.012
#> SRR1201768 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201769 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201767 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201770 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201771 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201772 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201773 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201774 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201786 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201784 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201785 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201778 2 0.3569 0.7348 0.000 0.804 0.000 0.196
#> SRR1201779 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201781 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201780 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201783 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201782 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201798 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201797 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201796 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201795 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201799 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201794 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201793 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201792 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201791 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201807 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201808 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201803 2 0.0188 0.9520 0.000 0.996 0.000 0.004
#> SRR1201804 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201805 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201806 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201801 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201802 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201800 2 0.4994 0.0515 0.000 0.520 0.000 0.480
#> SRR1201814 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201816 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201815 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201819 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201820 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201813 4 0.5000 0.0122 0.000 0.496 0.000 0.504
#> SRR1201817 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1201818 2 0.0188 0.9520 0.000 0.996 0.000 0.004
#> SRR1201825 4 0.2928 0.6843 0.052 0.052 0.000 0.896
#> SRR1201827 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201828 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201826 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201829 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201830 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201831 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201832 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201833 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201865 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201866 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201867 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201861 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201862 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201863 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201859 4 0.4888 0.2861 0.000 0.412 0.000 0.588
#> SRR1201864 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201860 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201873 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201871 4 0.0188 0.7358 0.000 0.004 0.000 0.996
#> SRR1201872 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201980 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1201979 4 0.0592 0.7322 0.000 0.016 0.000 0.984
#> SRR1201982 4 0.4790 -0.6402 0.000 0.000 0.380 0.620
#> SRR1201981 4 0.1940 0.7043 0.000 0.076 0.000 0.924
#> SRR1201998 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1201996 4 0.4040 0.5864 0.000 0.248 0.000 0.752
#> SRR1201997 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1202005 4 0.2149 0.6947 0.000 0.088 0.000 0.912
#> SRR1202006 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1202088 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1202087 2 0.0336 0.9482 0.000 0.992 0.000 0.008
#> SRR1202093 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1202092 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1202288 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1202289 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1202299 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1202298 2 0.4697 0.4249 0.000 0.644 0.000 0.356
#> SRR1202303 3 0.0000 0.3848 0.000 0.000 1.000 0.000
#> SRR1202372 2 0.0000 0.9544 0.000 1.000 0.000 0.000
#> SRR1202371 2 0.4713 0.4153 0.000 0.640 0.000 0.360
#> SRR1202563 4 0.6701 0.4080 0.120 0.296 0.000 0.584
#> SRR1202565 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1202564 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1202649 4 0.7328 0.3284 0.200 0.276 0.000 0.524
#> SRR1202650 4 0.4406 0.5460 0.000 0.300 0.000 0.700
#> SRR1202651 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1202843 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1202845 4 0.4454 0.5348 0.000 0.308 0.000 0.692
#> SRR1202847 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1202846 4 0.0000 0.7363 0.000 0.000 0.000 1.000
#> SRR1202945 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203132 3 0.4996 0.9415 0.000 0.000 0.516 0.484
#> SRR1203131 4 0.0469 0.7337 0.000 0.012 0.000 0.988
#> SRR1203133 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203827 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203828 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203842 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203843 1 0.0000 0.9927 1.000 0.000 0.000 0.000
#> SRR1203845 4 0.3688 0.6092 0.000 0.208 0.000 0.792
#> SRR1203844 4 0.4996 0.0545 0.000 0.484 0.000 0.516
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201590 2 0.1043 0.9206 0.000 0.960 0.000 0 0.040
#> SRR1201593 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201592 2 0.4161 0.3256 0.000 0.608 0.000 0 0.392
#> SRR1201617 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201616 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201619 2 0.0162 0.9602 0.000 0.996 0.000 0 0.004
#> SRR1201618 5 0.0000 0.8744 0.000 0.000 0.000 0 1.000
#> SRR1201620 2 0.4297 0.0597 0.000 0.528 0.000 0 0.472
#> SRR1201621 2 0.0162 0.9602 0.000 0.996 0.000 0 0.004
#> SRR1201623 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1201622 5 0.0000 0.8744 0.000 0.000 0.000 0 1.000
#> SRR1201624 5 0.0162 0.8766 0.000 0.000 0.004 0 0.996
#> SRR1201625 4 0.0000 1.0000 0.000 0.000 0.000 1 0.000
#> SRR1201626 1 0.4367 0.3149 0.620 0.008 0.000 0 0.372
#> SRR1201627 4 0.0000 1.0000 0.000 0.000 0.000 1 0.000
#> SRR1201628 5 0.1851 0.9033 0.000 0.000 0.088 0 0.912
#> SRR1201629 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1201630 5 0.1851 0.8504 0.000 0.088 0.000 0 0.912
#> SRR1201631 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1201641 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1201640 5 0.2124 0.9036 0.000 0.004 0.096 0 0.900
#> SRR1201643 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1201644 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1201661 5 0.2344 0.8758 0.000 0.064 0.032 0 0.904
#> SRR1201662 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1201663 5 0.0162 0.8766 0.000 0.000 0.004 0 0.996
#> SRR1201664 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201665 2 0.2852 0.7397 0.000 0.828 0.000 0 0.172
#> SRR1201666 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201667 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201668 2 0.4161 0.3722 0.000 0.608 0.000 0 0.392
#> SRR1201670 3 0.0703 0.9599 0.000 0.024 0.976 0 0.000
#> SRR1201669 3 0.0794 0.9542 0.000 0.028 0.972 0 0.000
#> SRR1201673 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201672 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201671 5 0.2193 0.9031 0.000 0.008 0.092 0 0.900
#> SRR1201677 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201676 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201675 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201674 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201678 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201682 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201683 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201680 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201681 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201679 2 0.3074 0.7071 0.000 0.804 0.000 0 0.196
#> SRR1201686 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201687 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201688 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201689 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201685 5 0.3086 0.6536 0.180 0.000 0.004 0 0.816
#> SRR1201692 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201691 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201690 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1201696 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201695 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201694 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201693 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201697 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201698 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201700 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1201708 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201707 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201706 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201702 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201705 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201701 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201704 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201703 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201716 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201715 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201717 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201712 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201709 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1201711 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201714 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201713 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201710 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201719 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1201718 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1201721 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201720 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1201723 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201722 5 0.1478 0.8989 0.000 0.000 0.064 0 0.936
#> SRR1201725 3 0.1732 0.8751 0.000 0.000 0.920 0 0.080
#> SRR1201724 5 0.2426 0.8785 0.000 0.064 0.036 0 0.900
#> SRR1201726 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1201727 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201731 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201730 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1201734 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201733 2 0.2127 0.8325 0.000 0.892 0.000 0 0.108
#> SRR1201736 5 0.4278 0.1863 0.000 0.452 0.000 0 0.548
#> SRR1201737 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201739 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201738 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201742 5 0.2561 0.7865 0.000 0.144 0.000 0 0.856
#> SRR1201743 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201745 2 0.0963 0.9291 0.000 0.964 0.000 0 0.036
#> SRR1201744 5 0.4723 0.6677 0.128 0.136 0.000 0 0.736
#> SRR1201749 5 0.1608 0.8510 0.000 0.072 0.000 0 0.928
#> SRR1201750 2 0.0162 0.9602 0.000 0.996 0.000 0 0.004
#> SRR1201752 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201751 5 0.1671 0.9017 0.000 0.000 0.076 0 0.924
#> SRR1201754 5 0.1965 0.9032 0.000 0.000 0.096 0 0.904
#> SRR1201753 5 0.1965 0.8450 0.000 0.096 0.000 0 0.904
#> SRR1201758 1 0.3305 0.6637 0.776 0.000 0.000 0 0.224
#> SRR1201759 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201760 5 0.1671 0.9017 0.000 0.000 0.076 0 0.924
#> SRR1201761 5 0.2074 0.9002 0.000 0.000 0.104 0 0.896
#> SRR1201763 4 0.0000 1.0000 0.000 0.000 0.000 1 0.000
#> SRR1201762 5 0.2389 0.7558 0.116 0.000 0.004 0 0.880
#> SRR1201764 5 0.2124 0.9036 0.000 0.004 0.096 0 0.900
#> SRR1201766 2 0.0794 0.9349 0.000 0.972 0.000 0 0.028
#> SRR1201768 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201769 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201767 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201770 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201771 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201772 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201773 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201774 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201786 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201784 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201785 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201778 2 0.3274 0.6648 0.000 0.780 0.000 0 0.220
#> SRR1201779 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201781 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201780 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201783 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201782 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201798 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201797 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201796 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201795 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201799 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201794 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201793 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201792 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201791 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1201807 2 0.0162 0.9602 0.000 0.996 0.000 0 0.004
#> SRR1201808 2 0.0162 0.9602 0.000 0.996 0.000 0 0.004
#> SRR1201803 2 0.0404 0.9540 0.000 0.988 0.000 0 0.012
#> SRR1201804 2 0.0162 0.9602 0.000 0.996 0.000 0 0.004
#> SRR1201805 2 0.0162 0.9602 0.000 0.996 0.000 0 0.004
#> SRR1201806 2 0.0162 0.9602 0.000 0.996 0.000 0 0.004
#> SRR1201801 2 0.0162 0.9602 0.000 0.996 0.000 0 0.004
#> SRR1201802 2 0.0162 0.9602 0.000 0.996 0.000 0 0.004
#> SRR1201800 5 0.2690 0.7779 0.000 0.156 0.000 0 0.844
#> SRR1201814 2 0.0162 0.9602 0.000 0.996 0.000 0 0.004
#> SRR1201816 2 0.0510 0.9502 0.000 0.984 0.000 0 0.016
#> SRR1201815 2 0.0162 0.9602 0.000 0.996 0.000 0 0.004
#> SRR1201819 2 0.0162 0.9602 0.000 0.996 0.000 0 0.004
#> SRR1201820 2 0.0162 0.9602 0.000 0.996 0.000 0 0.004
#> SRR1201813 5 0.3452 0.6523 0.000 0.244 0.000 0 0.756
#> SRR1201817 2 0.0162 0.9602 0.000 0.996 0.000 0 0.004
#> SRR1201818 2 0.0703 0.9420 0.000 0.976 0.000 0 0.024
#> SRR1201825 5 0.0000 0.8744 0.000 0.000 0.000 0 1.000
#> SRR1201827 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201828 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201826 5 0.1908 0.9036 0.000 0.000 0.092 0 0.908
#> SRR1201829 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201830 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201831 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201832 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201833 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201865 5 0.0162 0.8766 0.000 0.000 0.004 0 0.996
#> SRR1201866 5 0.0162 0.8766 0.000 0.000 0.004 0 0.996
#> SRR1201867 5 0.0162 0.8766 0.000 0.000 0.004 0 0.996
#> SRR1201861 5 0.0162 0.8766 0.000 0.000 0.004 0 0.996
#> SRR1201862 5 0.0162 0.8766 0.000 0.000 0.004 0 0.996
#> SRR1201863 5 0.0162 0.8766 0.000 0.000 0.004 0 0.996
#> SRR1201859 5 0.0000 0.8744 0.000 0.000 0.000 0 1.000
#> SRR1201864 5 0.0162 0.8766 0.000 0.000 0.004 0 0.996
#> SRR1201860 5 0.0162 0.8766 0.000 0.000 0.004 0 0.996
#> SRR1201873 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1201871 5 0.0162 0.8766 0.000 0.000 0.004 0 0.996
#> SRR1201872 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1201980 3 0.0000 0.9918 0.000 0.000 1.000 0 0.000
#> SRR1201979 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1201982 3 0.2813 0.7244 0.000 0.000 0.832 0 0.168
#> SRR1201981 5 0.2124 0.9036 0.000 0.004 0.096 0 0.900
#> SRR1201998 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1201996 5 0.2370 0.8916 0.000 0.040 0.056 0 0.904
#> SRR1201997 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1202005 5 0.2376 0.8895 0.000 0.044 0.052 0 0.904
#> SRR1202006 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1202088 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1202087 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1202093 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1202092 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1202288 2 0.0510 0.9503 0.000 0.984 0.000 0 0.016
#> SRR1202289 2 0.0000 0.9617 0.000 1.000 0.000 0 0.000
#> SRR1202299 2 0.0162 0.9602 0.000 0.996 0.000 0 0.004
#> SRR1202298 5 0.4278 0.2257 0.000 0.452 0.000 0 0.548
#> SRR1202303 4 0.0000 1.0000 0.000 0.000 0.000 1 0.000
#> SRR1202372 2 0.0162 0.9602 0.000 0.996 0.000 0 0.004
#> SRR1202371 5 0.4210 0.3442 0.000 0.412 0.000 0 0.588
#> SRR1202563 5 0.0404 0.8687 0.012 0.000 0.000 0 0.988
#> SRR1202565 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1202564 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1202649 5 0.2732 0.6856 0.160 0.000 0.000 0 0.840
#> SRR1202650 5 0.0000 0.8744 0.000 0.000 0.000 0 1.000
#> SRR1202651 5 0.1965 0.9032 0.000 0.000 0.096 0 0.904
#> SRR1202843 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1202844 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1202845 5 0.2378 0.8873 0.000 0.048 0.048 0 0.904
#> SRR1202847 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1202846 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1202945 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1202949 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1202977 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1202978 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1202979 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1202990 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1202999 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203005 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203006 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203007 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203009 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203008 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203010 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203011 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203025 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203026 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203027 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203061 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203089 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203125 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203128 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203129 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203130 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203132 3 0.0162 0.9866 0.000 0.000 0.996 0 0.004
#> SRR1203131 5 0.2020 0.9032 0.000 0.000 0.100 0 0.900
#> SRR1203133 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203138 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203760 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203761 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203770 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203771 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203772 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203773 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203774 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203775 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203800 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203801 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203802 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203803 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203804 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203805 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203806 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203807 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203808 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203811 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203812 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203813 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203814 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203815 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203816 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203817 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203818 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203819 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203822 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203823 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203824 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203825 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203826 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203827 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203828 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203829 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203830 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203831 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203832 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203833 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203834 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203835 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203836 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203837 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203838 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203839 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203842 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203843 1 0.0000 0.9894 1.000 0.000 0.000 0 0.000
#> SRR1203845 5 0.2124 0.8488 0.000 0.096 0.004 0 0.900
#> SRR1203844 5 0.1965 0.8450 0.000 0.096 0.000 0 0.904
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201590 6 0.3665 0.0334 0.000 0.252 0.000 0.000 0.020 0.728
#> SRR1201593 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201592 6 0.4544 0.5158 0.000 0.076 0.000 0.000 0.256 0.668
#> SRR1201617 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201616 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201619 6 0.0000 0.7030 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1201618 5 0.3950 0.2542 0.000 0.000 0.000 0.004 0.564 0.432
#> SRR1201620 6 0.3351 0.4335 0.000 0.000 0.000 0.000 0.288 0.712
#> SRR1201621 6 0.0000 0.7030 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1201623 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1201622 5 0.2135 0.3059 0.000 0.000 0.000 0.128 0.872 0.000
#> SRR1201624 5 0.3833 -0.1396 0.000 0.000 0.000 0.444 0.556 0.000
#> SRR1201625 4 0.3833 1.0000 0.000 0.444 0.000 0.556 0.000 0.000
#> SRR1201626 1 0.5219 0.3697 0.604 0.004 0.000 0.272 0.120 0.000
#> SRR1201627 4 0.3833 1.0000 0.000 0.444 0.000 0.556 0.000 0.000
#> SRR1201628 5 0.3747 0.5622 0.000 0.000 0.396 0.000 0.604 0.000
#> SRR1201629 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1201630 5 0.3907 0.2926 0.000 0.004 0.000 0.000 0.588 0.408
#> SRR1201631 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1201641 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1201640 5 0.5581 0.5816 0.000 0.016 0.260 0.000 0.588 0.136
#> SRR1201643 5 0.4159 0.5611 0.000 0.000 0.396 0.000 0.588 0.016
#> SRR1201644 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1201661 5 0.4591 0.3164 0.000 0.024 0.012 0.000 0.588 0.376
#> SRR1201662 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1201663 5 0.2854 0.2327 0.000 0.000 0.000 0.208 0.792 0.000
#> SRR1201664 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201665 2 0.5631 0.5859 0.000 0.508 0.000 0.000 0.168 0.324
#> SRR1201666 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201667 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201668 5 0.6979 -0.2415 0.000 0.136 0.000 0.228 0.480 0.156
#> SRR1201670 3 0.0717 0.9477 0.000 0.008 0.976 0.000 0.000 0.016
#> SRR1201669 3 0.1003 0.9345 0.000 0.016 0.964 0.000 0.000 0.020
#> SRR1201673 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201672 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201671 5 0.4459 0.5650 0.000 0.012 0.384 0.000 0.588 0.016
#> SRR1201677 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201676 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201675 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201674 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201678 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201682 6 0.3995 -0.8482 0.000 0.480 0.004 0.000 0.000 0.516
#> SRR1201683 6 0.4091 -0.8354 0.000 0.472 0.008 0.000 0.000 0.520
#> SRR1201680 6 0.3996 -0.8561 0.000 0.484 0.004 0.000 0.000 0.512
#> SRR1201681 6 0.4093 -0.8430 0.000 0.476 0.008 0.000 0.000 0.516
#> SRR1201679 6 0.2135 0.6332 0.000 0.000 0.000 0.000 0.128 0.872
#> SRR1201686 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201687 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201688 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201689 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201685 5 0.5529 -0.1538 0.176 0.000 0.000 0.276 0.548 0.000
#> SRR1201692 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201691 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201690 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1201696 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201695 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201694 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201693 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201697 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201698 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201700 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1201708 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201707 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201706 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201702 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201705 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201701 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201704 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201703 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201716 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201715 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201717 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201712 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201709 5 0.4356 0.5651 0.000 0.000 0.360 0.032 0.608 0.000
#> SRR1201711 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201714 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201713 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201710 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201719 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1201718 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1201721 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201720 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1201723 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201722 5 0.3653 0.5854 0.000 0.000 0.300 0.008 0.692 0.000
#> SRR1201725 3 0.0865 0.9319 0.000 0.000 0.964 0.000 0.036 0.000
#> SRR1201724 5 0.5318 0.4542 0.000 0.252 0.160 0.000 0.588 0.000
#> SRR1201726 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1201727 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201731 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201730 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1201734 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201733 2 0.5347 0.6240 0.000 0.480 0.000 0.000 0.108 0.412
#> SRR1201736 5 0.6129 -0.3406 0.000 0.324 0.000 0.000 0.348 0.328
#> SRR1201737 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201739 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201738 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201742 5 0.5000 0.2099 0.000 0.088 0.000 0.000 0.580 0.332
#> SRR1201743 2 0.3862 0.9266 0.000 0.524 0.000 0.000 0.000 0.476
#> SRR1201745 6 0.0632 0.6914 0.000 0.000 0.000 0.000 0.024 0.976
#> SRR1201744 6 0.5322 0.1756 0.128 0.000 0.000 0.000 0.316 0.556
#> SRR1201749 6 0.3789 0.1028 0.000 0.000 0.000 0.000 0.416 0.584
#> SRR1201750 6 0.0146 0.6973 0.000 0.004 0.000 0.000 0.000 0.996
#> SRR1201752 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201751 5 0.3390 0.5881 0.000 0.000 0.296 0.000 0.704 0.000
#> SRR1201754 5 0.3782 0.2917 0.000 0.000 0.000 0.000 0.588 0.412
#> SRR1201753 5 0.3782 0.2917 0.000 0.000 0.000 0.000 0.588 0.412
#> SRR1201758 1 0.4332 0.3839 0.616 0.000 0.000 0.032 0.352 0.000
#> SRR1201759 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201760 5 0.3464 0.5860 0.000 0.000 0.312 0.000 0.688 0.000
#> SRR1201761 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1201763 4 0.3833 1.0000 0.000 0.444 0.000 0.556 0.000 0.000
#> SRR1201762 5 0.4524 -0.0864 0.048 0.000 0.000 0.336 0.616 0.000
#> SRR1201764 5 0.5607 0.4019 0.000 0.000 0.408 0.144 0.448 0.000
#> SRR1201766 2 0.4429 0.9162 0.000 0.548 0.000 0.000 0.028 0.424
#> SRR1201768 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201769 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201767 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201770 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201771 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201772 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201773 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201774 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201786 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201784 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201785 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201778 6 0.2389 0.6339 0.000 0.008 0.000 0.000 0.128 0.864
#> SRR1201779 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201781 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201780 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201783 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201782 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201798 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201797 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201796 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201795 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201799 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201794 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201793 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201792 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201791 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1201807 6 0.0000 0.7030 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1201808 6 0.0000 0.7030 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1201803 6 0.0000 0.7030 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1201804 6 0.0000 0.7030 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1201805 6 0.0000 0.7030 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1201806 6 0.0000 0.7030 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1201801 6 0.0000 0.7030 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1201802 6 0.0000 0.7030 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1201800 6 0.3782 0.1111 0.000 0.000 0.000 0.000 0.412 0.588
#> SRR1201814 6 0.0000 0.7030 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1201816 6 0.0000 0.7030 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1201815 6 0.0000 0.7030 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1201819 6 0.0000 0.7030 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1201820 6 0.0000 0.7030 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1201813 6 0.3482 0.3833 0.000 0.000 0.000 0.000 0.316 0.684
#> SRR1201817 6 0.0000 0.7030 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1201818 6 0.0000 0.7030 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1201825 5 0.2631 0.2604 0.000 0.000 0.000 0.180 0.820 0.000
#> SRR1201827 3 0.2454 0.8355 0.000 0.000 0.840 0.160 0.000 0.000
#> SRR1201828 3 0.2454 0.8355 0.000 0.000 0.840 0.160 0.000 0.000
#> SRR1201826 5 0.3782 0.5753 0.000 0.000 0.360 0.000 0.636 0.004
#> SRR1201829 3 0.2454 0.8355 0.000 0.000 0.840 0.160 0.000 0.000
#> SRR1201830 3 0.2454 0.8355 0.000 0.000 0.840 0.160 0.000 0.000
#> SRR1201831 3 0.2454 0.8355 0.000 0.000 0.840 0.160 0.000 0.000
#> SRR1201832 3 0.2454 0.8355 0.000 0.000 0.840 0.160 0.000 0.000
#> SRR1201833 3 0.2454 0.8355 0.000 0.000 0.840 0.160 0.000 0.000
#> SRR1201865 5 0.3330 0.1499 0.000 0.000 0.000 0.284 0.716 0.000
#> SRR1201866 5 0.3330 0.1499 0.000 0.000 0.000 0.284 0.716 0.000
#> SRR1201867 5 0.3330 0.1499 0.000 0.000 0.000 0.284 0.716 0.000
#> SRR1201861 5 0.3330 0.1499 0.000 0.000 0.000 0.284 0.716 0.000
#> SRR1201862 5 0.3330 0.1499 0.000 0.000 0.000 0.284 0.716 0.000
#> SRR1201863 5 0.3468 0.1441 0.000 0.000 0.000 0.284 0.712 0.004
#> SRR1201859 5 0.3468 0.1441 0.000 0.000 0.000 0.284 0.712 0.004
#> SRR1201864 5 0.3330 0.1499 0.000 0.000 0.000 0.284 0.716 0.000
#> SRR1201860 5 0.3330 0.1499 0.000 0.000 0.000 0.284 0.716 0.000
#> SRR1201873 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1201871 5 0.2562 0.2650 0.000 0.000 0.000 0.172 0.828 0.000
#> SRR1201872 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1201980 3 0.0000 0.9727 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201979 5 0.3747 0.5621 0.000 0.000 0.396 0.000 0.604 0.000
#> SRR1201982 3 0.1863 0.8286 0.000 0.000 0.896 0.000 0.104 0.000
#> SRR1201981 5 0.4002 0.5567 0.000 0.008 0.404 0.000 0.588 0.000
#> SRR1201998 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1201996 5 0.5821 0.5551 0.000 0.028 0.216 0.000 0.588 0.168
#> SRR1201997 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1202005 5 0.3782 0.2917 0.000 0.000 0.000 0.000 0.588 0.412
#> SRR1202006 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1202088 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1202087 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1202093 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1202092 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1202288 6 0.2402 0.4933 0.000 0.120 0.000 0.000 0.012 0.868
#> SRR1202289 2 0.3833 0.9809 0.000 0.556 0.000 0.000 0.000 0.444
#> SRR1202299 6 0.0000 0.7030 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1202298 6 0.3101 0.5199 0.000 0.000 0.000 0.000 0.244 0.756
#> SRR1202303 4 0.3833 1.0000 0.000 0.444 0.000 0.556 0.000 0.000
#> SRR1202372 6 0.0000 0.7030 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1202371 6 0.3929 0.4332 0.000 0.000 0.000 0.028 0.272 0.700
#> SRR1202563 5 0.1914 0.3476 0.016 0.000 0.000 0.056 0.920 0.008
#> SRR1202565 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1202564 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1202649 5 0.3717 0.1314 0.160 0.000 0.000 0.064 0.776 0.000
#> SRR1202650 5 0.3782 0.2861 0.000 0.000 0.000 0.000 0.588 0.412
#> SRR1202651 5 0.3782 0.2917 0.000 0.000 0.000 0.000 0.588 0.412
#> SRR1202843 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202845 5 0.3782 0.2917 0.000 0.000 0.000 0.000 0.588 0.412
#> SRR1202847 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1202846 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1202945 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.0146 0.9684 0.000 0.000 0.996 0.000 0.004 0.000
#> SRR1203131 5 0.3782 0.5540 0.000 0.000 0.412 0.000 0.588 0.000
#> SRR1203133 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203827 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203828 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203842 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203843 1 0.0000 0.9887 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203845 5 0.5206 0.4135 0.000 0.284 0.128 0.000 0.588 0.000
#> SRR1203844 5 0.3782 0.2917 0.000 0.000 0.000 0.000 0.588 0.412
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["CV", "mclust"]
# you can also extract it by
# res = res_list["CV:mclust"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'CV' method.
#> Subgroups are detected by 'mclust' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 2.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 0.590 0.917 0.945 0.4026 0.625 0.625
#> 3 3 0.609 0.755 0.868 0.3802 0.864 0.782
#> 4 4 0.786 0.870 0.928 0.2295 0.831 0.658
#> 5 5 0.812 0.816 0.894 0.1180 0.863 0.607
#> 6 6 0.845 0.822 0.890 0.0559 0.908 0.632
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 2
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0.0000 0.925 0.000 1.000
#> SRR1201590 2 0.5842 0.884 0.140 0.860
#> SRR1201593 2 0.0000 0.925 0.000 1.000
#> SRR1201592 2 0.5842 0.884 0.140 0.860
#> SRR1201617 2 0.0000 0.925 0.000 1.000
#> SRR1201616 2 0.5842 0.884 0.140 0.860
#> SRR1201619 2 0.0000 0.925 0.000 1.000
#> SRR1201618 2 0.5842 0.884 0.140 0.860
#> SRR1201620 2 0.5842 0.884 0.140 0.860
#> SRR1201621 2 0.0000 0.925 0.000 1.000
#> SRR1201623 2 0.0000 0.925 0.000 1.000
#> SRR1201622 2 0.5842 0.884 0.140 0.860
#> SRR1201624 2 0.9087 0.665 0.324 0.676
#> SRR1201625 2 0.9044 0.672 0.320 0.680
#> SRR1201626 2 0.9087 0.665 0.324 0.676
#> SRR1201627 2 0.9044 0.672 0.320 0.680
#> SRR1201628 2 0.5842 0.884 0.140 0.860
#> SRR1201629 2 0.0000 0.925 0.000 1.000
#> SRR1201630 2 0.5842 0.884 0.140 0.860
#> SRR1201631 2 0.0000 0.925 0.000 1.000
#> SRR1201641 2 0.0000 0.925 0.000 1.000
#> SRR1201640 2 0.5842 0.884 0.140 0.860
#> SRR1201643 2 0.5842 0.884 0.140 0.860
#> SRR1201644 2 0.0000 0.925 0.000 1.000
#> SRR1201661 2 0.5842 0.884 0.140 0.860
#> SRR1201662 2 0.0000 0.925 0.000 1.000
#> SRR1201663 2 0.5842 0.884 0.140 0.860
#> SRR1201664 2 0.3431 0.910 0.064 0.936
#> SRR1201665 2 0.5842 0.884 0.140 0.860
#> SRR1201666 2 0.0000 0.925 0.000 1.000
#> SRR1201667 2 0.0000 0.925 0.000 1.000
#> SRR1201668 2 0.5842 0.884 0.140 0.860
#> SRR1201670 2 0.0000 0.925 0.000 1.000
#> SRR1201669 2 0.0000 0.925 0.000 1.000
#> SRR1201673 2 0.0000 0.925 0.000 1.000
#> SRR1201672 2 0.0000 0.925 0.000 1.000
#> SRR1201671 2 0.5842 0.884 0.140 0.860
#> SRR1201677 2 0.0000 0.925 0.000 1.000
#> SRR1201676 2 0.0000 0.925 0.000 1.000
#> SRR1201675 2 0.0000 0.925 0.000 1.000
#> SRR1201674 2 0.0000 0.925 0.000 1.000
#> SRR1201678 2 0.0000 0.925 0.000 1.000
#> SRR1201682 2 0.0000 0.925 0.000 1.000
#> SRR1201683 2 0.0000 0.925 0.000 1.000
#> SRR1201680 2 0.0000 0.925 0.000 1.000
#> SRR1201681 2 0.0000 0.925 0.000 1.000
#> SRR1201679 2 0.5842 0.884 0.140 0.860
#> SRR1201686 2 0.5842 0.884 0.140 0.860
#> SRR1201687 2 0.5842 0.884 0.140 0.860
#> SRR1201688 2 0.5842 0.884 0.140 0.860
#> SRR1201689 2 0.5842 0.884 0.140 0.860
#> SRR1201685 2 0.6048 0.879 0.148 0.852
#> SRR1201692 2 0.0000 0.925 0.000 1.000
#> SRR1201691 2 0.0000 0.925 0.000 1.000
#> SRR1201690 2 0.5842 0.884 0.140 0.860
#> SRR1201696 2 0.0000 0.925 0.000 1.000
#> SRR1201695 2 0.0000 0.925 0.000 1.000
#> SRR1201694 2 0.0000 0.925 0.000 1.000
#> SRR1201693 2 0.0000 0.925 0.000 1.000
#> SRR1201697 2 0.0000 0.925 0.000 1.000
#> SRR1201698 2 0.0000 0.925 0.000 1.000
#> SRR1201700 2 0.5842 0.884 0.140 0.860
#> SRR1201708 2 0.0000 0.925 0.000 1.000
#> SRR1201707 2 0.0000 0.925 0.000 1.000
#> SRR1201706 2 0.0000 0.925 0.000 1.000
#> SRR1201702 2 0.0000 0.925 0.000 1.000
#> SRR1201705 2 0.0000 0.925 0.000 1.000
#> SRR1201701 2 0.0000 0.925 0.000 1.000
#> SRR1201704 2 0.0000 0.925 0.000 1.000
#> SRR1201703 2 0.0000 0.925 0.000 1.000
#> SRR1201716 2 0.0000 0.925 0.000 1.000
#> SRR1201715 2 0.0000 0.925 0.000 1.000
#> SRR1201717 2 0.0000 0.925 0.000 1.000
#> SRR1201712 2 0.0000 0.925 0.000 1.000
#> SRR1201709 2 0.5842 0.884 0.140 0.860
#> SRR1201711 2 0.0000 0.925 0.000 1.000
#> SRR1201714 2 0.0000 0.925 0.000 1.000
#> SRR1201713 2 0.0000 0.925 0.000 1.000
#> SRR1201710 2 0.0000 0.925 0.000 1.000
#> SRR1201719 2 0.0000 0.925 0.000 1.000
#> SRR1201718 2 0.5842 0.884 0.140 0.860
#> SRR1201721 2 0.0000 0.925 0.000 1.000
#> SRR1201720 2 0.5842 0.884 0.140 0.860
#> SRR1201723 2 0.0000 0.925 0.000 1.000
#> SRR1201722 2 0.5842 0.884 0.140 0.860
#> SRR1201725 2 0.0000 0.925 0.000 1.000
#> SRR1201724 2 0.5842 0.884 0.140 0.860
#> SRR1201726 2 0.5842 0.884 0.140 0.860
#> SRR1201727 2 0.0000 0.925 0.000 1.000
#> SRR1201731 2 0.0000 0.925 0.000 1.000
#> SRR1201730 2 0.5842 0.884 0.140 0.860
#> SRR1201734 2 0.0000 0.925 0.000 1.000
#> SRR1201733 2 0.5842 0.884 0.140 0.860
#> SRR1201736 2 0.5842 0.884 0.140 0.860
#> SRR1201737 2 0.0000 0.925 0.000 1.000
#> SRR1201739 2 0.0000 0.925 0.000 1.000
#> SRR1201738 2 0.5842 0.884 0.140 0.860
#> SRR1201742 2 0.5842 0.884 0.140 0.860
#> SRR1201743 2 0.0000 0.925 0.000 1.000
#> SRR1201745 2 0.0376 0.924 0.004 0.996
#> SRR1201744 2 0.5842 0.884 0.140 0.860
#> SRR1201749 2 0.5842 0.884 0.140 0.860
#> SRR1201750 2 0.0000 0.925 0.000 1.000
#> SRR1201752 2 0.0000 0.925 0.000 1.000
#> SRR1201751 2 0.5842 0.884 0.140 0.860
#> SRR1201754 2 0.0000 0.925 0.000 1.000
#> SRR1201753 2 0.5842 0.884 0.140 0.860
#> SRR1201758 2 0.6048 0.879 0.148 0.852
#> SRR1201759 2 0.5629 0.888 0.132 0.868
#> SRR1201760 2 0.5842 0.884 0.140 0.860
#> SRR1201761 2 0.0000 0.925 0.000 1.000
#> SRR1201763 2 0.9044 0.672 0.320 0.680
#> SRR1201762 2 0.9087 0.665 0.324 0.676
#> SRR1201764 2 0.9087 0.665 0.324 0.676
#> SRR1201766 2 0.5842 0.884 0.140 0.860
#> SRR1201768 2 0.0000 0.925 0.000 1.000
#> SRR1201769 2 0.0000 0.925 0.000 1.000
#> SRR1201767 2 0.0000 0.925 0.000 1.000
#> SRR1201770 2 0.0000 0.925 0.000 1.000
#> SRR1201771 2 0.0000 0.925 0.000 1.000
#> SRR1201772 2 0.0000 0.925 0.000 1.000
#> SRR1201773 2 0.0000 0.925 0.000 1.000
#> SRR1201774 2 0.0000 0.925 0.000 1.000
#> SRR1201786 2 0.0000 0.925 0.000 1.000
#> SRR1201784 2 0.0000 0.925 0.000 1.000
#> SRR1201785 2 0.0000 0.925 0.000 1.000
#> SRR1201778 2 0.5842 0.884 0.140 0.860
#> SRR1201779 2 0.0000 0.925 0.000 1.000
#> SRR1201781 2 0.0000 0.925 0.000 1.000
#> SRR1201780 2 0.0000 0.925 0.000 1.000
#> SRR1201783 2 0.0000 0.925 0.000 1.000
#> SRR1201782 2 0.0000 0.925 0.000 1.000
#> SRR1201798 2 0.0000 0.925 0.000 1.000
#> SRR1201797 2 0.0000 0.925 0.000 1.000
#> SRR1201796 2 0.0000 0.925 0.000 1.000
#> SRR1201795 2 0.0000 0.925 0.000 1.000
#> SRR1201799 2 0.0000 0.925 0.000 1.000
#> SRR1201794 2 0.0000 0.925 0.000 1.000
#> SRR1201793 2 0.0000 0.925 0.000 1.000
#> SRR1201792 2 0.0000 0.925 0.000 1.000
#> SRR1201791 2 0.5842 0.884 0.140 0.860
#> SRR1201807 2 0.0000 0.925 0.000 1.000
#> SRR1201808 2 0.0000 0.925 0.000 1.000
#> SRR1201803 2 0.0000 0.925 0.000 1.000
#> SRR1201804 2 0.0000 0.925 0.000 1.000
#> SRR1201805 2 0.0000 0.925 0.000 1.000
#> SRR1201806 2 0.0000 0.925 0.000 1.000
#> SRR1201801 2 0.0000 0.925 0.000 1.000
#> SRR1201802 2 0.0000 0.925 0.000 1.000
#> SRR1201800 2 0.5842 0.884 0.140 0.860
#> SRR1201814 2 0.0000 0.925 0.000 1.000
#> SRR1201816 2 0.0000 0.925 0.000 1.000
#> SRR1201815 2 0.0000 0.925 0.000 1.000
#> SRR1201819 2 0.0000 0.925 0.000 1.000
#> SRR1201820 2 0.0000 0.925 0.000 1.000
#> SRR1201813 2 0.5842 0.884 0.140 0.860
#> SRR1201817 2 0.0000 0.925 0.000 1.000
#> SRR1201818 2 0.0000 0.925 0.000 1.000
#> SRR1201825 2 0.5842 0.884 0.140 0.860
#> SRR1201827 2 0.9044 0.672 0.320 0.680
#> SRR1201828 2 0.9044 0.672 0.320 0.680
#> SRR1201826 2 0.9044 0.672 0.320 0.680
#> SRR1201829 2 0.9044 0.672 0.320 0.680
#> SRR1201830 2 0.9044 0.672 0.320 0.680
#> SRR1201831 2 0.9044 0.672 0.320 0.680
#> SRR1201832 2 0.9044 0.672 0.320 0.680
#> SRR1201833 2 0.9044 0.672 0.320 0.680
#> SRR1201865 2 0.3274 0.911 0.060 0.940
#> SRR1201866 2 0.3274 0.911 0.060 0.940
#> SRR1201867 2 0.3274 0.911 0.060 0.940
#> SRR1201861 2 0.3274 0.911 0.060 0.940
#> SRR1201862 2 0.3274 0.911 0.060 0.940
#> SRR1201863 2 0.3274 0.911 0.060 0.940
#> SRR1201859 2 0.5842 0.884 0.140 0.860
#> SRR1201864 2 0.3274 0.911 0.060 0.940
#> SRR1201860 2 0.4022 0.905 0.080 0.920
#> SRR1201873 2 0.0000 0.925 0.000 1.000
#> SRR1201871 2 0.5946 0.881 0.144 0.856
#> SRR1201872 2 0.0000 0.925 0.000 1.000
#> SRR1201980 2 0.0000 0.925 0.000 1.000
#> SRR1201979 2 0.5842 0.884 0.140 0.860
#> SRR1201982 2 0.0000 0.925 0.000 1.000
#> SRR1201981 2 0.5842 0.884 0.140 0.860
#> SRR1201998 2 0.0000 0.925 0.000 1.000
#> SRR1201996 2 0.5842 0.884 0.140 0.860
#> SRR1201997 2 0.0000 0.925 0.000 1.000
#> SRR1202005 2 0.5178 0.894 0.116 0.884
#> SRR1202006 2 0.0000 0.925 0.000 1.000
#> SRR1202088 2 0.0000 0.925 0.000 1.000
#> SRR1202087 2 0.5842 0.884 0.140 0.860
#> SRR1202093 2 0.0000 0.925 0.000 1.000
#> SRR1202092 2 0.5842 0.884 0.140 0.860
#> SRR1202288 2 0.5842 0.884 0.140 0.860
#> SRR1202289 2 0.0000 0.925 0.000 1.000
#> SRR1202299 2 0.0000 0.925 0.000 1.000
#> SRR1202298 2 0.5842 0.884 0.140 0.860
#> SRR1202303 2 0.9044 0.672 0.320 0.680
#> SRR1202372 2 0.0000 0.925 0.000 1.000
#> SRR1202371 2 0.5842 0.884 0.140 0.860
#> SRR1202563 2 0.5946 0.881 0.144 0.856
#> SRR1202565 2 0.0000 0.925 0.000 1.000
#> SRR1202564 2 0.0000 0.925 0.000 1.000
#> SRR1202649 2 0.5946 0.881 0.144 0.856
#> SRR1202650 2 0.5842 0.884 0.140 0.860
#> SRR1202651 2 0.0000 0.925 0.000 1.000
#> SRR1202843 1 0.0000 0.998 1.000 0.000
#> SRR1202844 1 0.0000 0.998 1.000 0.000
#> SRR1202845 2 0.5946 0.881 0.144 0.856
#> SRR1202847 2 0.5059 0.895 0.112 0.888
#> SRR1202846 2 0.5294 0.892 0.120 0.880
#> SRR1202945 1 0.0000 0.998 1.000 0.000
#> SRR1202949 1 0.0000 0.998 1.000 0.000
#> SRR1202977 1 0.0000 0.998 1.000 0.000
#> SRR1202978 1 0.0000 0.998 1.000 0.000
#> SRR1202979 1 0.0000 0.998 1.000 0.000
#> SRR1202990 1 0.0000 0.998 1.000 0.000
#> SRR1202999 1 0.0000 0.998 1.000 0.000
#> SRR1203005 1 0.0000 0.998 1.000 0.000
#> SRR1203006 1 0.0000 0.998 1.000 0.000
#> SRR1203007 1 0.0000 0.998 1.000 0.000
#> SRR1203009 1 0.3114 0.932 0.944 0.056
#> SRR1203008 1 0.3114 0.932 0.944 0.056
#> SRR1203010 1 0.0000 0.998 1.000 0.000
#> SRR1203011 1 0.0000 0.998 1.000 0.000
#> SRR1203025 1 0.0000 0.998 1.000 0.000
#> SRR1203026 1 0.0000 0.998 1.000 0.000
#> SRR1203027 1 0.0000 0.998 1.000 0.000
#> SRR1203061 1 0.0000 0.998 1.000 0.000
#> SRR1203089 1 0.0000 0.998 1.000 0.000
#> SRR1203125 1 0.0000 0.998 1.000 0.000
#> SRR1203128 1 0.0000 0.998 1.000 0.000
#> SRR1203129 1 0.0000 0.998 1.000 0.000
#> SRR1203130 1 0.0000 0.998 1.000 0.000
#> SRR1203132 2 0.0000 0.925 0.000 1.000
#> SRR1203131 2 0.5842 0.884 0.140 0.860
#> SRR1203133 1 0.0000 0.998 1.000 0.000
#> SRR1203138 1 0.0000 0.998 1.000 0.000
#> SRR1203760 1 0.0000 0.998 1.000 0.000
#> SRR1203761 1 0.0000 0.998 1.000 0.000
#> SRR1203770 1 0.0000 0.998 1.000 0.000
#> SRR1203771 1 0.0000 0.998 1.000 0.000
#> SRR1203772 1 0.0000 0.998 1.000 0.000
#> SRR1203773 1 0.0000 0.998 1.000 0.000
#> SRR1203774 1 0.0000 0.998 1.000 0.000
#> SRR1203775 1 0.0000 0.998 1.000 0.000
#> SRR1203800 1 0.0000 0.998 1.000 0.000
#> SRR1203801 1 0.0000 0.998 1.000 0.000
#> SRR1203802 1 0.0000 0.998 1.000 0.000
#> SRR1203803 1 0.0000 0.998 1.000 0.000
#> SRR1203804 1 0.0000 0.998 1.000 0.000
#> SRR1203805 1 0.0000 0.998 1.000 0.000
#> SRR1203806 1 0.0000 0.998 1.000 0.000
#> SRR1203807 1 0.0000 0.998 1.000 0.000
#> SRR1203808 1 0.0000 0.998 1.000 0.000
#> SRR1203811 1 0.0000 0.998 1.000 0.000
#> SRR1203812 1 0.0000 0.998 1.000 0.000
#> SRR1203813 1 0.0000 0.998 1.000 0.000
#> SRR1203814 1 0.0000 0.998 1.000 0.000
#> SRR1203815 1 0.0000 0.998 1.000 0.000
#> SRR1203816 1 0.0000 0.998 1.000 0.000
#> SRR1203817 1 0.0000 0.998 1.000 0.000
#> SRR1203818 1 0.0000 0.998 1.000 0.000
#> SRR1203819 1 0.0000 0.998 1.000 0.000
#> SRR1203822 1 0.0000 0.998 1.000 0.000
#> SRR1203823 1 0.0000 0.998 1.000 0.000
#> SRR1203824 1 0.0000 0.998 1.000 0.000
#> SRR1203825 1 0.0000 0.998 1.000 0.000
#> SRR1203826 1 0.0000 0.998 1.000 0.000
#> SRR1203827 2 0.9129 0.658 0.328 0.672
#> SRR1203828 1 0.0000 0.998 1.000 0.000
#> SRR1203829 1 0.0000 0.998 1.000 0.000
#> SRR1203830 1 0.0000 0.998 1.000 0.000
#> SRR1203831 1 0.0000 0.998 1.000 0.000
#> SRR1203832 1 0.0000 0.998 1.000 0.000
#> SRR1203833 1 0.0000 0.998 1.000 0.000
#> SRR1203834 1 0.0000 0.998 1.000 0.000
#> SRR1203835 1 0.0000 0.998 1.000 0.000
#> SRR1203836 1 0.0000 0.998 1.000 0.000
#> SRR1203837 1 0.0000 0.998 1.000 0.000
#> SRR1203838 1 0.0000 0.998 1.000 0.000
#> SRR1203839 1 0.0000 0.998 1.000 0.000
#> SRR1203842 2 0.9129 0.658 0.328 0.672
#> SRR1203843 1 0.0000 0.998 1.000 0.000
#> SRR1203845 2 0.0000 0.925 0.000 1.000
#> SRR1203844 2 0.5842 0.884 0.140 0.860
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201590 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201593 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201592 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201617 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201616 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201619 2 0.0747 0.759 0.000 0.984 0.016
#> SRR1201618 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201620 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201621 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201623 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201622 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201624 3 0.5325 0.887 0.004 0.248 0.748
#> SRR1201625 3 0.5098 0.889 0.000 0.248 0.752
#> SRR1201626 3 0.5098 0.889 0.000 0.248 0.752
#> SRR1201627 3 0.5098 0.889 0.000 0.248 0.752
#> SRR1201628 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201629 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201630 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201631 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201641 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201640 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201643 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201644 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201661 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201662 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201663 3 0.6299 0.585 0.000 0.476 0.524
#> SRR1201664 2 0.4750 0.556 0.000 0.784 0.216
#> SRR1201665 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201666 2 0.1289 0.756 0.000 0.968 0.032
#> SRR1201667 2 0.1289 0.756 0.000 0.968 0.032
#> SRR1201668 3 0.5905 0.830 0.000 0.352 0.648
#> SRR1201670 2 0.1163 0.749 0.000 0.972 0.028
#> SRR1201669 2 0.0592 0.757 0.000 0.988 0.012
#> SRR1201673 2 0.1289 0.756 0.000 0.968 0.032
#> SRR1201672 2 0.1289 0.756 0.000 0.968 0.032
#> SRR1201671 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201677 2 0.1289 0.756 0.000 0.968 0.032
#> SRR1201676 2 0.1289 0.756 0.000 0.968 0.032
#> SRR1201675 2 0.1289 0.756 0.000 0.968 0.032
#> SRR1201674 2 0.1289 0.756 0.000 0.968 0.032
#> SRR1201678 2 0.1289 0.756 0.000 0.968 0.032
#> SRR1201682 2 0.1289 0.756 0.000 0.968 0.032
#> SRR1201683 2 0.1289 0.756 0.000 0.968 0.032
#> SRR1201680 2 0.1289 0.756 0.000 0.968 0.032
#> SRR1201681 2 0.1289 0.756 0.000 0.968 0.032
#> SRR1201679 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201686 3 0.6274 0.669 0.000 0.456 0.544
#> SRR1201687 3 0.6252 0.695 0.000 0.444 0.556
#> SRR1201688 3 0.6280 0.659 0.000 0.460 0.540
#> SRR1201689 3 0.6286 0.648 0.000 0.464 0.536
#> SRR1201685 3 0.5835 0.841 0.000 0.340 0.660
#> SRR1201692 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201691 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201690 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201696 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201695 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201694 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201693 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201697 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201698 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201700 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201708 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201707 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201706 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201702 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201705 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201701 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201704 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201703 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201716 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201715 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201717 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201712 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201709 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201711 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201714 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201713 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201710 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201719 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201718 2 0.4121 0.621 0.000 0.832 0.168
#> SRR1201721 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201720 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201723 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201722 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201725 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201724 2 0.4399 0.596 0.000 0.812 0.188
#> SRR1201726 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201727 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201731 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201730 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201734 2 0.4887 0.650 0.000 0.772 0.228
#> SRR1201733 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201736 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201737 2 0.1289 0.756 0.000 0.968 0.032
#> SRR1201739 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201738 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201742 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201743 2 0.1289 0.756 0.000 0.968 0.032
#> SRR1201745 2 0.3619 0.678 0.000 0.864 0.136
#> SRR1201744 3 0.5905 0.830 0.000 0.352 0.648
#> SRR1201749 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201750 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201752 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201751 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201754 2 0.0237 0.762 0.000 0.996 0.004
#> SRR1201753 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201758 3 0.6205 0.844 0.008 0.336 0.656
#> SRR1201759 3 0.6026 0.809 0.000 0.376 0.624
#> SRR1201760 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201761 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201763 3 0.5098 0.889 0.000 0.248 0.752
#> SRR1201762 3 0.5325 0.887 0.004 0.248 0.748
#> SRR1201764 3 0.5098 0.889 0.000 0.248 0.752
#> SRR1201766 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201768 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201769 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201767 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201770 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201771 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201772 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201773 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201774 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201786 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201784 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201785 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201778 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201779 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201781 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201780 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201783 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201782 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201798 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201797 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201796 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201795 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201799 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201794 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201793 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201792 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201791 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201807 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201808 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201803 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201804 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201805 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201806 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201801 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201802 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201800 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201814 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201816 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201815 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201819 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201820 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201813 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201817 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201818 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1201825 2 0.6168 -0.151 0.000 0.588 0.412
#> SRR1201827 3 0.5098 0.889 0.000 0.248 0.752
#> SRR1201828 3 0.5098 0.889 0.000 0.248 0.752
#> SRR1201826 3 0.5098 0.889 0.000 0.248 0.752
#> SRR1201829 3 0.5098 0.889 0.000 0.248 0.752
#> SRR1201830 3 0.5098 0.889 0.000 0.248 0.752
#> SRR1201831 3 0.5098 0.889 0.000 0.248 0.752
#> SRR1201832 3 0.5098 0.889 0.000 0.248 0.752
#> SRR1201833 3 0.5098 0.889 0.000 0.248 0.752
#> SRR1201865 2 0.1753 0.736 0.000 0.952 0.048
#> SRR1201866 2 0.1753 0.736 0.000 0.952 0.048
#> SRR1201867 2 0.1643 0.738 0.000 0.956 0.044
#> SRR1201861 2 0.1643 0.738 0.000 0.956 0.044
#> SRR1201862 2 0.1753 0.736 0.000 0.952 0.048
#> SRR1201863 2 0.1643 0.738 0.000 0.956 0.044
#> SRR1201859 2 0.6267 -0.337 0.000 0.548 0.452
#> SRR1201864 2 0.1753 0.736 0.000 0.952 0.048
#> SRR1201860 2 0.1753 0.736 0.000 0.952 0.048
#> SRR1201873 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201871 2 0.5138 0.503 0.000 0.748 0.252
#> SRR1201872 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201980 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201979 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201982 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201981 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201998 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1201996 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1201997 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1202005 2 0.1964 0.731 0.000 0.944 0.056
#> SRR1202006 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1202088 2 0.1289 0.756 0.000 0.968 0.032
#> SRR1202087 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1202093 2 0.1289 0.756 0.000 0.968 0.032
#> SRR1202092 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1202288 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1202289 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1202299 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1202298 2 0.4887 0.541 0.000 0.772 0.228
#> SRR1202303 3 0.5098 0.889 0.000 0.248 0.752
#> SRR1202372 2 0.5098 0.642 0.000 0.752 0.248
#> SRR1202371 2 0.5138 0.502 0.000 0.748 0.252
#> SRR1202563 3 0.6267 0.652 0.000 0.452 0.548
#> SRR1202565 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1202564 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1202649 3 0.5926 0.826 0.000 0.356 0.644
#> SRR1202650 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1202651 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1202843 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1202844 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1202845 2 0.5254 0.473 0.000 0.736 0.264
#> SRR1202847 2 0.3551 0.661 0.000 0.868 0.132
#> SRR1202846 2 0.3619 0.657 0.000 0.864 0.136
#> SRR1202945 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1202949 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1202977 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1202978 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1202979 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1202990 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1202999 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203005 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203006 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203007 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203009 1 0.1289 0.964 0.968 0.000 0.032
#> SRR1203008 1 0.1289 0.964 0.968 0.000 0.032
#> SRR1203010 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203011 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203025 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203026 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203027 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203061 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203089 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203125 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203128 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203129 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203130 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203132 2 0.0000 0.762 0.000 1.000 0.000
#> SRR1203131 2 0.5098 0.511 0.000 0.752 0.248
#> SRR1203133 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203138 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203760 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203761 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203770 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203771 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203772 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203773 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203774 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203775 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203800 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203801 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203802 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203803 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203804 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203805 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203806 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203807 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203808 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203811 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203812 1 0.1163 0.968 0.972 0.000 0.028
#> SRR1203813 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203814 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203815 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203816 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203817 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203818 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203819 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203822 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203823 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203824 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203825 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203826 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203827 3 0.7782 0.831 0.100 0.248 0.652
#> SRR1203828 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203829 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203830 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203831 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203832 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203833 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203834 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203835 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203836 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203837 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203838 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203839 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203842 3 0.7782 0.831 0.100 0.248 0.652
#> SRR1203843 1 0.0000 0.999 1.000 0.000 0.000
#> SRR1203845 2 0.0747 0.760 0.000 0.984 0.016
#> SRR1203844 2 0.5098 0.511 0.000 0.752 0.248
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.0707 0.9582 0.000 0.980 0.020 0.000
#> SRR1201590 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201593 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201592 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201617 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201616 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201619 3 0.1637 0.8449 0.000 0.060 0.940 0.000
#> SRR1201618 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201620 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201621 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201623 3 0.0188 0.8499 0.000 0.004 0.996 0.000
#> SRR1201622 3 0.3123 0.8181 0.000 0.000 0.844 0.156
#> SRR1201624 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1201625 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1201626 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1201627 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1201628 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201629 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201630 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201631 3 0.1716 0.8438 0.000 0.064 0.936 0.000
#> SRR1201641 3 0.1474 0.8486 0.000 0.052 0.948 0.000
#> SRR1201640 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201643 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201644 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201661 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201662 3 0.2149 0.8303 0.000 0.088 0.912 0.000
#> SRR1201663 3 0.4985 0.1495 0.000 0.000 0.532 0.468
#> SRR1201664 3 0.2081 0.8395 0.000 0.000 0.916 0.084
#> SRR1201665 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201666 3 0.4040 0.6661 0.000 0.248 0.752 0.000
#> SRR1201667 3 0.4008 0.6709 0.000 0.244 0.756 0.000
#> SRR1201668 4 0.4564 0.5219 0.000 0.000 0.328 0.672
#> SRR1201670 3 0.1576 0.8481 0.000 0.004 0.948 0.048
#> SRR1201669 3 0.1489 0.8487 0.000 0.004 0.952 0.044
#> SRR1201673 3 0.3400 0.7464 0.000 0.180 0.820 0.000
#> SRR1201672 3 0.3400 0.7464 0.000 0.180 0.820 0.000
#> SRR1201671 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201677 3 0.3400 0.7464 0.000 0.180 0.820 0.000
#> SRR1201676 3 0.3400 0.7464 0.000 0.180 0.820 0.000
#> SRR1201675 3 0.3400 0.7464 0.000 0.180 0.820 0.000
#> SRR1201674 3 0.3400 0.7464 0.000 0.180 0.820 0.000
#> SRR1201678 3 0.3400 0.7464 0.000 0.180 0.820 0.000
#> SRR1201682 3 0.3400 0.7464 0.000 0.180 0.820 0.000
#> SRR1201683 3 0.3400 0.7464 0.000 0.180 0.820 0.000
#> SRR1201680 3 0.3400 0.7464 0.000 0.180 0.820 0.000
#> SRR1201681 3 0.3400 0.7464 0.000 0.180 0.820 0.000
#> SRR1201679 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201686 4 0.4830 0.3916 0.000 0.000 0.392 0.608
#> SRR1201687 4 0.4830 0.3918 0.000 0.000 0.392 0.608
#> SRR1201688 4 0.4907 0.3093 0.000 0.000 0.420 0.580
#> SRR1201689 4 0.4933 0.2693 0.000 0.000 0.432 0.568
#> SRR1201685 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1201692 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201691 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201690 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201696 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201695 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201694 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201693 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201697 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201698 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201700 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201708 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201707 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201706 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201702 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201705 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201701 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201704 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201703 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201716 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201715 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201717 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201712 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201709 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201711 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201714 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201713 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201710 3 0.1211 0.8519 0.000 0.040 0.960 0.000
#> SRR1201719 3 0.1474 0.8486 0.000 0.052 0.948 0.000
#> SRR1201718 3 0.3024 0.8206 0.000 0.000 0.852 0.148
#> SRR1201721 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201720 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201723 3 0.1929 0.8539 0.000 0.024 0.940 0.036
#> SRR1201722 3 0.4277 0.6694 0.000 0.000 0.720 0.280
#> SRR1201725 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201724 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201726 3 0.3123 0.8159 0.000 0.000 0.844 0.156
#> SRR1201727 3 0.1767 0.8535 0.000 0.044 0.944 0.012
#> SRR1201731 3 0.1635 0.8530 0.000 0.044 0.948 0.008
#> SRR1201730 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201734 2 0.3764 0.6597 0.000 0.784 0.216 0.000
#> SRR1201733 3 0.3123 0.8159 0.000 0.000 0.844 0.156
#> SRR1201736 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201737 3 0.2149 0.8315 0.000 0.088 0.912 0.000
#> SRR1201739 2 0.4713 0.3763 0.000 0.640 0.360 0.000
#> SRR1201738 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201742 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201743 3 0.2814 0.7924 0.000 0.132 0.868 0.000
#> SRR1201745 3 0.3004 0.8366 0.000 0.048 0.892 0.060
#> SRR1201744 4 0.3801 0.6834 0.000 0.000 0.220 0.780
#> SRR1201749 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201750 3 0.2921 0.7888 0.000 0.140 0.860 0.000
#> SRR1201752 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201751 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201754 3 0.4697 0.4576 0.000 0.356 0.644 0.000
#> SRR1201753 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201758 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1201759 4 0.3123 0.7621 0.000 0.000 0.156 0.844
#> SRR1201760 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201761 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201763 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1201762 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1201764 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1201766 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201768 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201769 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201767 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201770 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201771 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201772 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201773 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201774 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201786 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201784 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201785 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201778 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201779 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201781 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201780 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201783 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201782 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201798 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201797 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201796 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201795 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201799 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201794 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201793 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201792 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201791 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201807 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201808 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201803 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201804 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201805 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201806 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201801 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201802 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201800 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201814 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201816 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201815 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201819 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201820 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201813 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201817 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201818 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1201825 3 0.4193 0.6891 0.000 0.000 0.732 0.268
#> SRR1201827 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1201828 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1201826 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1201829 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1201830 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1201831 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1201832 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1201833 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1201865 3 0.0469 0.8500 0.000 0.000 0.988 0.012
#> SRR1201866 3 0.0469 0.8500 0.000 0.000 0.988 0.012
#> SRR1201867 3 0.0469 0.8500 0.000 0.000 0.988 0.012
#> SRR1201861 3 0.0592 0.8500 0.000 0.000 0.984 0.016
#> SRR1201862 3 0.0469 0.8500 0.000 0.000 0.988 0.012
#> SRR1201863 3 0.0469 0.8500 0.000 0.000 0.988 0.012
#> SRR1201859 3 0.3942 0.7390 0.000 0.000 0.764 0.236
#> SRR1201864 3 0.0469 0.8500 0.000 0.000 0.988 0.012
#> SRR1201860 3 0.1716 0.8444 0.000 0.000 0.936 0.064
#> SRR1201873 3 0.0188 0.8499 0.000 0.004 0.996 0.000
#> SRR1201871 3 0.4040 0.7249 0.000 0.000 0.752 0.248
#> SRR1201872 3 0.0336 0.8504 0.000 0.008 0.992 0.000
#> SRR1201980 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1201979 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201982 3 0.1389 0.8502 0.000 0.048 0.952 0.000
#> SRR1201981 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201998 3 0.1474 0.8486 0.000 0.052 0.948 0.000
#> SRR1201996 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1201997 3 0.1474 0.8486 0.000 0.052 0.948 0.000
#> SRR1202005 3 0.5412 0.7350 0.000 0.168 0.736 0.096
#> SRR1202006 3 0.3266 0.7592 0.000 0.168 0.832 0.000
#> SRR1202088 3 0.3024 0.7782 0.000 0.148 0.852 0.000
#> SRR1202087 3 0.3024 0.8206 0.000 0.000 0.852 0.148
#> SRR1202093 3 0.3486 0.7378 0.000 0.188 0.812 0.000
#> SRR1202092 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1202288 3 0.3123 0.8159 0.000 0.000 0.844 0.156
#> SRR1202289 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1202299 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1202298 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1202303 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1202372 2 0.0000 0.9821 0.000 1.000 0.000 0.000
#> SRR1202371 3 0.3123 0.8159 0.000 0.000 0.844 0.156
#> SRR1202563 3 0.4996 0.0719 0.000 0.000 0.516 0.484
#> SRR1202565 3 0.1474 0.8486 0.000 0.052 0.948 0.000
#> SRR1202564 3 0.1474 0.8486 0.000 0.052 0.948 0.000
#> SRR1202649 4 0.4916 0.2728 0.000 0.000 0.424 0.576
#> SRR1202650 3 0.3123 0.8164 0.000 0.000 0.844 0.156
#> SRR1202651 3 0.2760 0.7998 0.000 0.128 0.872 0.000
#> SRR1202843 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1202845 3 0.3726 0.7697 0.000 0.000 0.788 0.212
#> SRR1202847 3 0.5293 0.7653 0.000 0.100 0.748 0.152
#> SRR1202846 3 0.5293 0.7653 0.000 0.100 0.748 0.152
#> SRR1202945 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203009 1 0.2814 0.8605 0.868 0.000 0.000 0.132
#> SRR1203008 1 0.2814 0.8605 0.868 0.000 0.000 0.132
#> SRR1203010 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203132 3 0.1302 0.8518 0.000 0.044 0.956 0.000
#> SRR1203131 3 0.3074 0.8190 0.000 0.000 0.848 0.152
#> SRR1203133 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203812 1 0.0921 0.9705 0.972 0.000 0.000 0.028
#> SRR1203813 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203826 1 0.0188 0.9923 0.996 0.000 0.000 0.004
#> SRR1203827 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1203828 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203842 4 0.0000 0.8586 0.000 0.000 0.000 1.000
#> SRR1203843 1 0.0000 0.9960 1.000 0.000 0.000 0.000
#> SRR1203845 3 0.4804 0.3934 0.000 0.384 0.616 0.000
#> SRR1203844 3 0.3074 0.8190 0.000 0.000 0.848 0.152
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.2515 0.87656 0.000 0.904 0.044 0.008 0.044
#> SRR1201590 5 0.0404 0.82629 0.000 0.000 0.012 0.000 0.988
#> SRR1201593 2 0.0794 0.94055 0.000 0.972 0.028 0.000 0.000
#> SRR1201592 5 0.0404 0.82629 0.000 0.000 0.012 0.000 0.988
#> SRR1201617 2 0.0794 0.94055 0.000 0.972 0.028 0.000 0.000
#> SRR1201616 5 0.0404 0.82629 0.000 0.000 0.012 0.000 0.988
#> SRR1201619 3 0.5625 0.49186 0.000 0.012 0.564 0.056 0.368
#> SRR1201618 5 0.0609 0.83046 0.000 0.000 0.020 0.000 0.980
#> SRR1201620 5 0.0404 0.82629 0.000 0.000 0.012 0.000 0.988
#> SRR1201621 2 0.0865 0.94086 0.000 0.972 0.024 0.000 0.004
#> SRR1201623 5 0.4295 0.57362 0.000 0.004 0.248 0.024 0.724
#> SRR1201622 5 0.0703 0.82988 0.000 0.000 0.024 0.000 0.976
#> SRR1201624 4 0.1608 0.97140 0.000 0.000 0.000 0.928 0.072
#> SRR1201625 4 0.1608 0.97140 0.000 0.000 0.000 0.928 0.072
#> SRR1201626 4 0.1608 0.97140 0.000 0.000 0.000 0.928 0.072
#> SRR1201627 4 0.1608 0.97140 0.000 0.000 0.000 0.928 0.072
#> SRR1201628 5 0.0609 0.83046 0.000 0.000 0.020 0.000 0.980
#> SRR1201629 3 0.3989 0.68569 0.000 0.004 0.728 0.008 0.260
#> SRR1201630 5 0.0609 0.83013 0.000 0.000 0.020 0.000 0.980
#> SRR1201631 5 0.6995 0.05873 0.000 0.132 0.288 0.056 0.524
#> SRR1201641 5 0.5573 0.08291 0.000 0.008 0.388 0.056 0.548
#> SRR1201640 5 0.0609 0.83046 0.000 0.000 0.020 0.000 0.980
#> SRR1201643 5 0.0609 0.83046 0.000 0.000 0.020 0.000 0.980
#> SRR1201644 3 0.4556 0.68175 0.000 0.004 0.680 0.024 0.292
#> SRR1201661 5 0.0609 0.83046 0.000 0.000 0.020 0.000 0.980
#> SRR1201662 3 0.6995 0.47161 0.000 0.120 0.504 0.056 0.320
#> SRR1201663 5 0.0798 0.82897 0.000 0.000 0.008 0.016 0.976
#> SRR1201664 5 0.3791 0.73043 0.000 0.000 0.112 0.076 0.812
#> SRR1201665 5 0.0404 0.82629 0.000 0.000 0.012 0.000 0.988
#> SRR1201666 5 0.7532 -0.03490 0.000 0.216 0.288 0.056 0.440
#> SRR1201667 5 0.7532 -0.03490 0.000 0.216 0.288 0.056 0.440
#> SRR1201668 5 0.1952 0.79615 0.000 0.000 0.004 0.084 0.912
#> SRR1201670 5 0.4286 0.46911 0.000 0.004 0.340 0.004 0.652
#> SRR1201669 5 0.4302 0.46000 0.000 0.004 0.344 0.004 0.648
#> SRR1201673 3 0.5158 0.71967 0.000 0.032 0.716 0.056 0.196
#> SRR1201672 3 0.5158 0.71967 0.000 0.032 0.716 0.056 0.196
#> SRR1201671 5 0.0609 0.83046 0.000 0.000 0.020 0.000 0.980
#> SRR1201677 3 0.5158 0.71967 0.000 0.032 0.716 0.056 0.196
#> SRR1201676 3 0.5158 0.71967 0.000 0.032 0.716 0.056 0.196
#> SRR1201675 3 0.5158 0.71967 0.000 0.032 0.716 0.056 0.196
#> SRR1201674 3 0.5158 0.71967 0.000 0.032 0.716 0.056 0.196
#> SRR1201678 3 0.5158 0.71967 0.000 0.032 0.716 0.056 0.196
#> SRR1201682 3 0.5312 0.71947 0.000 0.044 0.712 0.056 0.188
#> SRR1201683 3 0.5312 0.71947 0.000 0.044 0.712 0.056 0.188
#> SRR1201680 3 0.5312 0.71947 0.000 0.044 0.712 0.056 0.188
#> SRR1201681 3 0.5312 0.71947 0.000 0.044 0.712 0.056 0.188
#> SRR1201679 5 0.0609 0.82806 0.000 0.000 0.020 0.000 0.980
#> SRR1201686 5 0.4519 0.63596 0.000 0.000 0.052 0.228 0.720
#> SRR1201687 5 0.4519 0.63596 0.000 0.000 0.052 0.228 0.720
#> SRR1201688 5 0.4519 0.63596 0.000 0.000 0.052 0.228 0.720
#> SRR1201689 5 0.4519 0.63596 0.000 0.000 0.052 0.228 0.720
#> SRR1201685 4 0.1908 0.95007 0.000 0.000 0.000 0.908 0.092
#> SRR1201692 3 0.2352 0.77878 0.000 0.004 0.896 0.008 0.092
#> SRR1201691 3 0.2228 0.78074 0.000 0.004 0.900 0.004 0.092
#> SRR1201690 5 0.0609 0.83046 0.000 0.000 0.020 0.000 0.980
#> SRR1201696 3 0.2228 0.78074 0.000 0.004 0.900 0.004 0.092
#> SRR1201695 3 0.2068 0.78023 0.000 0.004 0.904 0.000 0.092
#> SRR1201694 3 0.2720 0.78091 0.000 0.004 0.880 0.020 0.096
#> SRR1201693 3 0.2068 0.78023 0.000 0.004 0.904 0.000 0.092
#> SRR1201697 3 0.2068 0.78023 0.000 0.004 0.904 0.000 0.092
#> SRR1201698 3 0.2919 0.78134 0.000 0.004 0.868 0.024 0.104
#> SRR1201700 5 0.0703 0.82988 0.000 0.000 0.024 0.000 0.976
#> SRR1201708 3 0.2568 0.77590 0.000 0.004 0.888 0.016 0.092
#> SRR1201707 3 0.2464 0.77759 0.000 0.004 0.892 0.012 0.092
#> SRR1201706 3 0.2568 0.77590 0.000 0.004 0.888 0.016 0.092
#> SRR1201702 3 0.2464 0.77763 0.000 0.004 0.892 0.012 0.092
#> SRR1201705 3 0.2568 0.77590 0.000 0.004 0.888 0.016 0.092
#> SRR1201701 3 0.2464 0.77759 0.000 0.004 0.892 0.012 0.092
#> SRR1201704 3 0.2464 0.77997 0.000 0.004 0.892 0.012 0.092
#> SRR1201703 3 0.2568 0.77590 0.000 0.004 0.888 0.016 0.092
#> SRR1201716 3 0.2463 0.78012 0.000 0.004 0.888 0.008 0.100
#> SRR1201715 3 0.2463 0.78012 0.000 0.004 0.888 0.008 0.100
#> SRR1201717 3 0.2463 0.78012 0.000 0.004 0.888 0.008 0.100
#> SRR1201712 3 0.2463 0.78012 0.000 0.004 0.888 0.008 0.100
#> SRR1201709 5 0.0609 0.83046 0.000 0.000 0.020 0.000 0.980
#> SRR1201711 3 0.2463 0.78012 0.000 0.004 0.888 0.008 0.100
#> SRR1201714 3 0.2463 0.78012 0.000 0.004 0.888 0.008 0.100
#> SRR1201713 3 0.2463 0.78012 0.000 0.004 0.888 0.008 0.100
#> SRR1201710 3 0.2463 0.78012 0.000 0.004 0.888 0.008 0.100
#> SRR1201719 3 0.4912 0.69697 0.000 0.008 0.700 0.056 0.236
#> SRR1201718 5 0.0880 0.82710 0.000 0.000 0.032 0.000 0.968
#> SRR1201721 3 0.4033 0.70992 0.000 0.004 0.744 0.016 0.236
#> SRR1201720 5 0.0609 0.83046 0.000 0.000 0.020 0.000 0.980
#> SRR1201723 5 0.3585 0.63744 0.000 0.004 0.220 0.004 0.772
#> SRR1201722 5 0.0898 0.82797 0.000 0.000 0.008 0.020 0.972
#> SRR1201725 3 0.4798 0.66149 0.000 0.008 0.684 0.036 0.272
#> SRR1201724 5 0.1571 0.81150 0.000 0.000 0.060 0.004 0.936
#> SRR1201726 5 0.0609 0.83046 0.000 0.000 0.020 0.000 0.980
#> SRR1201727 5 0.4524 0.07064 0.000 0.004 0.420 0.004 0.572
#> SRR1201731 5 0.4664 -0.00199 0.000 0.004 0.436 0.008 0.552
#> SRR1201730 5 0.0703 0.82994 0.000 0.000 0.024 0.000 0.976
#> SRR1201734 2 0.4888 0.67927 0.000 0.752 0.064 0.032 0.152
#> SRR1201733 5 0.0404 0.82629 0.000 0.000 0.012 0.000 0.988
#> SRR1201736 5 0.0290 0.82943 0.000 0.000 0.008 0.000 0.992
#> SRR1201737 5 0.6625 -0.16371 0.000 0.068 0.416 0.056 0.460
#> SRR1201739 2 0.5107 0.68707 0.000 0.744 0.144 0.056 0.056
#> SRR1201738 5 0.0404 0.82629 0.000 0.000 0.012 0.000 0.988
#> SRR1201742 5 0.0703 0.83057 0.000 0.000 0.024 0.000 0.976
#> SRR1201743 3 0.5060 0.70401 0.000 0.016 0.700 0.056 0.228
#> SRR1201745 5 0.4198 0.72675 0.000 0.036 0.032 0.132 0.800
#> SRR1201744 4 0.4560 0.11254 0.000 0.000 0.008 0.508 0.484
#> SRR1201749 5 0.0290 0.83031 0.000 0.000 0.008 0.000 0.992
#> SRR1201750 5 0.6948 0.29318 0.000 0.240 0.152 0.056 0.552
#> SRR1201752 3 0.4085 0.74284 0.000 0.004 0.760 0.028 0.208
#> SRR1201751 5 0.0609 0.83046 0.000 0.000 0.020 0.000 0.980
#> SRR1201754 2 0.7731 -0.20456 0.000 0.368 0.264 0.056 0.312
#> SRR1201753 5 0.0162 0.82954 0.000 0.000 0.004 0.000 0.996
#> SRR1201758 4 0.1792 0.95993 0.000 0.000 0.000 0.916 0.084
#> SRR1201759 5 0.4287 0.11560 0.000 0.000 0.000 0.460 0.540
#> SRR1201760 5 0.0703 0.82988 0.000 0.000 0.024 0.000 0.976
#> SRR1201761 5 0.4974 -0.11435 0.000 0.004 0.488 0.020 0.488
#> SRR1201763 4 0.1608 0.97140 0.000 0.000 0.000 0.928 0.072
#> SRR1201762 4 0.1608 0.97140 0.000 0.000 0.000 0.928 0.072
#> SRR1201764 4 0.1608 0.97140 0.000 0.000 0.000 0.928 0.072
#> SRR1201766 5 0.0404 0.82629 0.000 0.000 0.012 0.000 0.988
#> SRR1201768 2 0.0000 0.94599 0.000 1.000 0.000 0.000 0.000
#> SRR1201769 2 0.0000 0.94599 0.000 1.000 0.000 0.000 0.000
#> SRR1201767 2 0.0000 0.94599 0.000 1.000 0.000 0.000 0.000
#> SRR1201770 2 0.0000 0.94599 0.000 1.000 0.000 0.000 0.000
#> SRR1201771 2 0.0000 0.94599 0.000 1.000 0.000 0.000 0.000
#> SRR1201772 2 0.0000 0.94599 0.000 1.000 0.000 0.000 0.000
#> SRR1201773 2 0.0000 0.94599 0.000 1.000 0.000 0.000 0.000
#> SRR1201774 2 0.0000 0.94599 0.000 1.000 0.000 0.000 0.000
#> SRR1201786 2 0.0000 0.94599 0.000 1.000 0.000 0.000 0.000
#> SRR1201784 2 0.0000 0.94599 0.000 1.000 0.000 0.000 0.000
#> SRR1201785 2 0.0000 0.94599 0.000 1.000 0.000 0.000 0.000
#> SRR1201778 5 0.0404 0.82629 0.000 0.000 0.012 0.000 0.988
#> SRR1201779 2 0.0000 0.94599 0.000 1.000 0.000 0.000 0.000
#> SRR1201781 2 0.0000 0.94599 0.000 1.000 0.000 0.000 0.000
#> SRR1201780 2 0.0000 0.94599 0.000 1.000 0.000 0.000 0.000
#> SRR1201783 2 0.0162 0.94684 0.000 0.996 0.004 0.000 0.000
#> SRR1201782 2 0.0000 0.94599 0.000 1.000 0.000 0.000 0.000
#> SRR1201798 2 0.0510 0.94535 0.000 0.984 0.016 0.000 0.000
#> SRR1201797 2 0.0510 0.94535 0.000 0.984 0.016 0.000 0.000
#> SRR1201796 2 0.0510 0.94535 0.000 0.984 0.016 0.000 0.000
#> SRR1201795 2 0.0510 0.94535 0.000 0.984 0.016 0.000 0.000
#> SRR1201799 2 0.0510 0.94535 0.000 0.984 0.016 0.000 0.000
#> SRR1201794 2 0.0510 0.94535 0.000 0.984 0.016 0.000 0.000
#> SRR1201793 2 0.0510 0.94535 0.000 0.984 0.016 0.000 0.000
#> SRR1201792 2 0.0510 0.94535 0.000 0.984 0.016 0.000 0.000
#> SRR1201791 5 0.0404 0.82629 0.000 0.000 0.012 0.000 0.988
#> SRR1201807 2 0.0609 0.94598 0.000 0.980 0.020 0.000 0.000
#> SRR1201808 2 0.0609 0.94598 0.000 0.980 0.020 0.000 0.000
#> SRR1201803 2 0.0609 0.94598 0.000 0.980 0.020 0.000 0.000
#> SRR1201804 2 0.0609 0.94598 0.000 0.980 0.020 0.000 0.000
#> SRR1201805 2 0.0609 0.94598 0.000 0.980 0.020 0.000 0.000
#> SRR1201806 2 0.0609 0.94598 0.000 0.980 0.020 0.000 0.000
#> SRR1201801 2 0.0609 0.94598 0.000 0.980 0.020 0.000 0.000
#> SRR1201802 2 0.0609 0.94598 0.000 0.980 0.020 0.000 0.000
#> SRR1201800 5 0.0404 0.82629 0.000 0.000 0.012 0.000 0.988
#> SRR1201814 2 0.0609 0.94504 0.000 0.980 0.020 0.000 0.000
#> SRR1201816 2 0.0609 0.94504 0.000 0.980 0.020 0.000 0.000
#> SRR1201815 2 0.0609 0.94504 0.000 0.980 0.020 0.000 0.000
#> SRR1201819 2 0.0609 0.94504 0.000 0.980 0.020 0.000 0.000
#> SRR1201820 2 0.0609 0.94504 0.000 0.980 0.020 0.000 0.000
#> SRR1201813 5 0.0290 0.82760 0.000 0.000 0.008 0.000 0.992
#> SRR1201817 2 0.0609 0.94504 0.000 0.980 0.020 0.000 0.000
#> SRR1201818 2 0.0609 0.94504 0.000 0.980 0.020 0.000 0.000
#> SRR1201825 5 0.0566 0.82906 0.000 0.000 0.004 0.012 0.984
#> SRR1201827 4 0.1608 0.97140 0.000 0.000 0.000 0.928 0.072
#> SRR1201828 4 0.1608 0.97140 0.000 0.000 0.000 0.928 0.072
#> SRR1201826 4 0.1608 0.97140 0.000 0.000 0.000 0.928 0.072
#> SRR1201829 4 0.1608 0.97140 0.000 0.000 0.000 0.928 0.072
#> SRR1201830 4 0.1608 0.97140 0.000 0.000 0.000 0.928 0.072
#> SRR1201831 4 0.1608 0.97140 0.000 0.000 0.000 0.928 0.072
#> SRR1201832 4 0.1608 0.97140 0.000 0.000 0.000 0.928 0.072
#> SRR1201833 4 0.1608 0.97140 0.000 0.000 0.000 0.928 0.072
#> SRR1201865 5 0.3988 0.61894 0.000 0.000 0.252 0.016 0.732
#> SRR1201866 5 0.3988 0.61894 0.000 0.000 0.252 0.016 0.732
#> SRR1201867 5 0.4014 0.61333 0.000 0.000 0.256 0.016 0.728
#> SRR1201861 5 0.4014 0.61333 0.000 0.000 0.256 0.016 0.728
#> SRR1201862 5 0.3988 0.61894 0.000 0.000 0.252 0.016 0.732
#> SRR1201863 5 0.4014 0.61333 0.000 0.000 0.256 0.016 0.728
#> SRR1201859 5 0.0510 0.83041 0.000 0.000 0.016 0.000 0.984
#> SRR1201864 5 0.3988 0.61894 0.000 0.000 0.252 0.016 0.732
#> SRR1201860 5 0.3160 0.69321 0.000 0.000 0.188 0.004 0.808
#> SRR1201873 5 0.4438 0.36186 0.000 0.004 0.384 0.004 0.608
#> SRR1201871 5 0.1597 0.81150 0.000 0.000 0.012 0.048 0.940
#> SRR1201872 5 0.4580 0.10708 0.000 0.004 0.460 0.004 0.532
#> SRR1201980 3 0.3870 0.64441 0.000 0.004 0.732 0.004 0.260
#> SRR1201979 5 0.0703 0.82988 0.000 0.000 0.024 0.000 0.976
#> SRR1201982 3 0.3737 0.73495 0.000 0.004 0.764 0.008 0.224
#> SRR1201981 5 0.0609 0.83046 0.000 0.000 0.020 0.000 0.980
#> SRR1201998 3 0.5611 0.33495 0.000 0.008 0.528 0.056 0.408
#> SRR1201996 5 0.0703 0.82984 0.000 0.000 0.024 0.000 0.976
#> SRR1201997 3 0.5623 0.31156 0.000 0.008 0.520 0.056 0.416
#> SRR1202005 5 0.3544 0.65554 0.000 0.200 0.008 0.004 0.788
#> SRR1202006 3 0.6668 0.61053 0.000 0.144 0.596 0.056 0.204
#> SRR1202088 3 0.5984 0.37710 0.000 0.024 0.492 0.056 0.428
#> SRR1202087 5 0.1386 0.82304 0.000 0.000 0.032 0.016 0.952
#> SRR1202093 3 0.6631 0.48843 0.000 0.080 0.528 0.056 0.336
#> SRR1202092 5 0.0510 0.82715 0.000 0.000 0.016 0.000 0.984
#> SRR1202288 5 0.0404 0.82629 0.000 0.000 0.012 0.000 0.988
#> SRR1202289 2 0.0794 0.94055 0.000 0.972 0.028 0.000 0.000
#> SRR1202299 2 0.0880 0.93891 0.000 0.968 0.032 0.000 0.000
#> SRR1202298 5 0.0404 0.82629 0.000 0.000 0.012 0.000 0.988
#> SRR1202303 4 0.1608 0.97140 0.000 0.000 0.000 0.928 0.072
#> SRR1202372 2 0.0992 0.93866 0.000 0.968 0.024 0.000 0.008
#> SRR1202371 5 0.0404 0.82629 0.000 0.000 0.012 0.000 0.988
#> SRR1202563 5 0.0955 0.82295 0.000 0.000 0.004 0.028 0.968
#> SRR1202565 3 0.4828 0.70915 0.000 0.008 0.712 0.056 0.224
#> SRR1202564 3 0.4769 0.71265 0.000 0.008 0.720 0.056 0.216
#> SRR1202649 5 0.0693 0.82941 0.000 0.000 0.008 0.012 0.980
#> SRR1202650 5 0.0671 0.83083 0.000 0.000 0.016 0.004 0.980
#> SRR1202651 3 0.6848 0.58303 0.000 0.140 0.564 0.056 0.240
#> SRR1202843 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1202845 5 0.1908 0.77125 0.000 0.000 0.000 0.092 0.908
#> SRR1202847 5 0.4418 0.64174 0.000 0.180 0.060 0.004 0.756
#> SRR1202846 5 0.4418 0.64174 0.000 0.180 0.060 0.004 0.756
#> SRR1202945 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.1082 0.96521 0.964 0.000 0.000 0.028 0.008
#> SRR1203008 1 0.1082 0.96521 0.964 0.000 0.000 0.028 0.008
#> SRR1203010 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.4870 0.29955 0.000 0.004 0.532 0.016 0.448
#> SRR1203131 5 0.0703 0.82988 0.000 0.000 0.024 0.000 0.976
#> SRR1203133 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0162 0.99507 0.996 0.000 0.000 0.004 0.000
#> SRR1203807 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0510 0.98414 0.984 0.000 0.000 0.016 0.000
#> SRR1203813 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0404 0.98783 0.988 0.000 0.000 0.012 0.000
#> SRR1203827 4 0.1608 0.97140 0.000 0.000 0.000 0.928 0.072
#> SRR1203828 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203842 4 0.1608 0.97140 0.000 0.000 0.000 0.928 0.072
#> SRR1203843 1 0.0000 0.99856 1.000 0.000 0.000 0.000 0.000
#> SRR1203845 2 0.7511 0.00740 0.000 0.444 0.248 0.052 0.256
#> SRR1203844 5 0.0290 0.82661 0.000 0.000 0.008 0.000 0.992
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 2 0.4220 0.6172 0.000 0.664 0.004 0.000 0.028 0.304
#> SRR1201590 5 0.1075 0.8991 0.000 0.000 0.000 0.000 0.952 0.048
#> SRR1201593 2 0.2454 0.8427 0.000 0.840 0.000 0.000 0.000 0.160
#> SRR1201592 5 0.1007 0.9020 0.000 0.000 0.000 0.000 0.956 0.044
#> SRR1201617 2 0.2454 0.8427 0.000 0.840 0.000 0.000 0.000 0.160
#> SRR1201616 5 0.1204 0.8951 0.000 0.000 0.000 0.000 0.944 0.056
#> SRR1201619 6 0.3419 0.8085 0.000 0.008 0.096 0.000 0.072 0.824
#> SRR1201618 5 0.0146 0.9074 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1201620 5 0.0790 0.9056 0.000 0.000 0.000 0.000 0.968 0.032
#> SRR1201621 2 0.2595 0.8393 0.000 0.836 0.004 0.000 0.000 0.160
#> SRR1201623 3 0.5688 0.4352 0.000 0.004 0.472 0.000 0.384 0.140
#> SRR1201622 5 0.1082 0.8893 0.000 0.000 0.040 0.004 0.956 0.000
#> SRR1201624 4 0.0000 0.8524 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201625 4 0.0000 0.8524 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201626 4 0.0000 0.8524 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201627 4 0.0000 0.8524 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201628 5 0.0000 0.9070 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1201629 3 0.3845 0.7073 0.000 0.000 0.772 0.000 0.088 0.140
#> SRR1201630 5 0.0146 0.9074 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1201631 6 0.3352 0.7595 0.000 0.008 0.032 0.000 0.148 0.812
#> SRR1201641 6 0.2889 0.8103 0.000 0.004 0.044 0.000 0.096 0.856
#> SRR1201640 5 0.0508 0.9062 0.000 0.000 0.012 0.000 0.984 0.004
#> SRR1201643 5 0.0000 0.9070 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1201644 3 0.5443 0.5490 0.000 0.000 0.572 0.000 0.184 0.244
#> SRR1201661 5 0.0146 0.9074 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1201662 6 0.2224 0.8175 0.000 0.012 0.020 0.000 0.064 0.904
#> SRR1201663 5 0.1340 0.8859 0.000 0.000 0.040 0.008 0.948 0.004
#> SRR1201664 4 0.5745 0.1288 0.000 0.000 0.036 0.448 0.444 0.072
#> SRR1201665 5 0.0865 0.9033 0.000 0.000 0.000 0.000 0.964 0.036
#> SRR1201666 6 0.2128 0.8119 0.000 0.032 0.004 0.000 0.056 0.908
#> SRR1201667 6 0.2052 0.8130 0.000 0.028 0.004 0.000 0.056 0.912
#> SRR1201668 5 0.2445 0.8463 0.000 0.000 0.040 0.060 0.892 0.008
#> SRR1201670 5 0.7367 -0.2931 0.000 0.000 0.332 0.204 0.336 0.128
#> SRR1201669 5 0.7388 -0.3061 0.000 0.000 0.332 0.204 0.332 0.132
#> SRR1201673 6 0.4728 0.7340 0.000 0.024 0.232 0.000 0.056 0.688
#> SRR1201672 6 0.4728 0.7340 0.000 0.024 0.232 0.000 0.056 0.688
#> SRR1201671 5 0.0291 0.9071 0.000 0.000 0.004 0.000 0.992 0.004
#> SRR1201677 6 0.4728 0.7340 0.000 0.024 0.232 0.000 0.056 0.688
#> SRR1201676 6 0.4752 0.7294 0.000 0.024 0.236 0.000 0.056 0.684
#> SRR1201675 6 0.4728 0.7340 0.000 0.024 0.232 0.000 0.056 0.688
#> SRR1201674 6 0.4752 0.7294 0.000 0.024 0.236 0.000 0.056 0.684
#> SRR1201678 6 0.4728 0.7340 0.000 0.024 0.232 0.000 0.056 0.688
#> SRR1201682 6 0.2880 0.8247 0.000 0.024 0.048 0.000 0.056 0.872
#> SRR1201683 6 0.2815 0.8245 0.000 0.024 0.044 0.000 0.056 0.876
#> SRR1201680 6 0.2815 0.8245 0.000 0.024 0.044 0.000 0.056 0.876
#> SRR1201681 6 0.2815 0.8245 0.000 0.024 0.044 0.000 0.056 0.876
#> SRR1201679 5 0.0632 0.9065 0.000 0.000 0.000 0.000 0.976 0.024
#> SRR1201686 4 0.5246 0.4208 0.000 0.000 0.012 0.548 0.368 0.072
#> SRR1201687 4 0.5246 0.4208 0.000 0.000 0.012 0.548 0.368 0.072
#> SRR1201688 4 0.5246 0.4208 0.000 0.000 0.012 0.548 0.368 0.072
#> SRR1201689 4 0.5246 0.4208 0.000 0.000 0.012 0.548 0.368 0.072
#> SRR1201685 4 0.3697 0.7850 0.000 0.000 0.040 0.820 0.080 0.060
#> SRR1201692 3 0.2260 0.7201 0.000 0.000 0.860 0.000 0.000 0.140
#> SRR1201691 3 0.2340 0.7153 0.000 0.000 0.852 0.000 0.000 0.148
#> SRR1201690 5 0.0000 0.9070 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1201696 3 0.2378 0.7130 0.000 0.000 0.848 0.000 0.000 0.152
#> SRR1201695 3 0.2340 0.7155 0.000 0.000 0.852 0.000 0.000 0.148
#> SRR1201694 3 0.2597 0.6960 0.000 0.000 0.824 0.000 0.000 0.176
#> SRR1201693 3 0.2219 0.7220 0.000 0.000 0.864 0.000 0.000 0.136
#> SRR1201697 3 0.2454 0.7072 0.000 0.000 0.840 0.000 0.000 0.160
#> SRR1201698 3 0.2838 0.6845 0.000 0.000 0.808 0.000 0.004 0.188
#> SRR1201700 5 0.0146 0.9068 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201708 3 0.1610 0.7385 0.000 0.000 0.916 0.000 0.000 0.084
#> SRR1201707 3 0.1556 0.7385 0.000 0.000 0.920 0.000 0.000 0.080
#> SRR1201706 3 0.1610 0.7385 0.000 0.000 0.916 0.000 0.000 0.084
#> SRR1201702 3 0.1663 0.7381 0.000 0.000 0.912 0.000 0.000 0.088
#> SRR1201705 3 0.1714 0.7375 0.000 0.000 0.908 0.000 0.000 0.092
#> SRR1201701 3 0.1610 0.7387 0.000 0.000 0.916 0.000 0.000 0.084
#> SRR1201704 3 0.1957 0.7325 0.000 0.000 0.888 0.000 0.000 0.112
#> SRR1201703 3 0.1501 0.7383 0.000 0.000 0.924 0.000 0.000 0.076
#> SRR1201716 3 0.1411 0.7384 0.000 0.000 0.936 0.000 0.004 0.060
#> SRR1201715 3 0.1349 0.7372 0.000 0.000 0.940 0.000 0.004 0.056
#> SRR1201717 3 0.1411 0.7384 0.000 0.000 0.936 0.000 0.004 0.060
#> SRR1201712 3 0.1471 0.7392 0.000 0.000 0.932 0.000 0.004 0.064
#> SRR1201709 5 0.0146 0.9058 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1201711 3 0.1349 0.7372 0.000 0.000 0.940 0.000 0.004 0.056
#> SRR1201714 3 0.1349 0.7372 0.000 0.000 0.940 0.000 0.004 0.056
#> SRR1201713 3 0.1471 0.7392 0.000 0.000 0.932 0.000 0.004 0.064
#> SRR1201710 3 0.1411 0.7372 0.000 0.000 0.936 0.000 0.004 0.060
#> SRR1201719 6 0.3821 0.7852 0.000 0.004 0.156 0.000 0.064 0.776
#> SRR1201718 5 0.2442 0.7797 0.000 0.000 0.144 0.000 0.852 0.004
#> SRR1201721 3 0.3901 0.6995 0.000 0.000 0.768 0.000 0.096 0.136
#> SRR1201720 5 0.0146 0.9068 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201723 5 0.7250 -0.0617 0.000 0.000 0.136 0.300 0.396 0.168
#> SRR1201722 5 0.1226 0.8871 0.000 0.000 0.040 0.004 0.952 0.004
#> SRR1201725 6 0.4945 0.6590 0.000 0.004 0.240 0.000 0.108 0.648
#> SRR1201724 5 0.3141 0.6882 0.000 0.000 0.200 0.000 0.788 0.012
#> SRR1201726 5 0.0146 0.9058 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1201727 3 0.5980 0.4531 0.000 0.000 0.500 0.008 0.276 0.216
#> SRR1201731 3 0.5962 0.3947 0.000 0.004 0.488 0.000 0.260 0.248
#> SRR1201730 5 0.2340 0.7713 0.000 0.000 0.148 0.000 0.852 0.000
#> SRR1201734 2 0.4847 0.2835 0.000 0.532 0.004 0.000 0.048 0.416
#> SRR1201733 5 0.1204 0.8967 0.000 0.000 0.000 0.000 0.944 0.056
#> SRR1201736 5 0.0363 0.9066 0.000 0.000 0.000 0.000 0.988 0.012
#> SRR1201737 6 0.2307 0.8206 0.000 0.012 0.024 0.000 0.064 0.900
#> SRR1201739 6 0.4356 0.0955 0.000 0.432 0.004 0.000 0.016 0.548
#> SRR1201738 5 0.1141 0.8972 0.000 0.000 0.000 0.000 0.948 0.052
#> SRR1201742 5 0.0458 0.9065 0.000 0.000 0.000 0.000 0.984 0.016
#> SRR1201743 6 0.2957 0.8238 0.000 0.016 0.056 0.000 0.064 0.864
#> SRR1201745 5 0.4712 0.4939 0.000 0.040 0.000 0.020 0.652 0.288
#> SRR1201744 5 0.5395 0.2841 0.000 0.000 0.040 0.352 0.560 0.048
#> SRR1201749 5 0.0363 0.9072 0.000 0.000 0.000 0.000 0.988 0.012
#> SRR1201750 6 0.5093 0.7232 0.000 0.172 0.028 0.000 0.116 0.684
#> SRR1201752 3 0.4565 0.6240 0.000 0.004 0.680 0.000 0.072 0.244
#> SRR1201751 5 0.0146 0.9068 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201754 6 0.4702 0.7110 0.000 0.200 0.028 0.000 0.064 0.708
#> SRR1201753 5 0.0458 0.9077 0.000 0.000 0.000 0.000 0.984 0.016
#> SRR1201758 4 0.2389 0.8172 0.000 0.000 0.000 0.888 0.052 0.060
#> SRR1201759 4 0.5048 0.4753 0.000 0.000 0.008 0.580 0.344 0.068
#> SRR1201760 5 0.0000 0.9070 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1201761 3 0.5344 0.5854 0.000 0.000 0.588 0.000 0.172 0.240
#> SRR1201763 4 0.0000 0.8524 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201762 4 0.0000 0.8524 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201764 4 0.0000 0.8524 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201766 5 0.1141 0.8976 0.000 0.000 0.000 0.000 0.948 0.052
#> SRR1201768 2 0.0000 0.8954 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201769 2 0.0000 0.8954 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201767 2 0.0000 0.8954 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201770 2 0.0000 0.8954 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201771 2 0.0000 0.8954 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201772 2 0.0000 0.8954 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201773 2 0.0000 0.8954 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201774 2 0.0000 0.8954 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201786 2 0.0000 0.8954 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201784 2 0.0146 0.8953 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1201785 2 0.0000 0.8954 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201778 5 0.0713 0.9061 0.000 0.000 0.000 0.000 0.972 0.028
#> SRR1201779 2 0.0000 0.8954 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201781 2 0.0000 0.8954 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201780 2 0.0000 0.8954 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201783 2 0.0000 0.8954 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201782 2 0.0000 0.8954 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201798 2 0.2260 0.8504 0.000 0.860 0.000 0.000 0.000 0.140
#> SRR1201797 2 0.2260 0.8504 0.000 0.860 0.000 0.000 0.000 0.140
#> SRR1201796 2 0.2260 0.8504 0.000 0.860 0.000 0.000 0.000 0.140
#> SRR1201795 2 0.2260 0.8504 0.000 0.860 0.000 0.000 0.000 0.140
#> SRR1201799 2 0.2260 0.8504 0.000 0.860 0.000 0.000 0.000 0.140
#> SRR1201794 2 0.2260 0.8504 0.000 0.860 0.000 0.000 0.000 0.140
#> SRR1201793 2 0.2260 0.8504 0.000 0.860 0.000 0.000 0.000 0.140
#> SRR1201792 2 0.2260 0.8504 0.000 0.860 0.000 0.000 0.000 0.140
#> SRR1201791 5 0.1204 0.8951 0.000 0.000 0.000 0.000 0.944 0.056
#> SRR1201807 2 0.1663 0.8943 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201808 2 0.1663 0.8943 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201803 2 0.1663 0.8943 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201804 2 0.1663 0.8943 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201805 2 0.1663 0.8943 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201806 2 0.1663 0.8943 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201801 2 0.1663 0.8943 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201802 2 0.1663 0.8943 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201800 5 0.0547 0.9064 0.000 0.000 0.000 0.000 0.980 0.020
#> SRR1201814 2 0.1663 0.8943 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201816 2 0.1663 0.8943 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201815 2 0.1663 0.8943 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201819 2 0.1663 0.8943 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201820 2 0.1663 0.8943 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201813 5 0.0547 0.9064 0.000 0.000 0.000 0.000 0.980 0.020
#> SRR1201817 2 0.1663 0.8943 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201818 2 0.1663 0.8943 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201825 5 0.1649 0.8791 0.000 0.000 0.040 0.016 0.936 0.008
#> SRR1201827 4 0.0000 0.8524 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201828 4 0.0000 0.8524 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201826 4 0.0458 0.8480 0.000 0.000 0.000 0.984 0.000 0.016
#> SRR1201829 4 0.0000 0.8524 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201830 4 0.0000 0.8524 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201831 4 0.0000 0.8524 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201832 4 0.0000 0.8524 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201833 4 0.0000 0.8524 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201865 3 0.4344 0.5059 0.000 0.000 0.612 0.000 0.356 0.032
#> SRR1201866 3 0.4319 0.5188 0.000 0.000 0.620 0.000 0.348 0.032
#> SRR1201867 3 0.4319 0.5188 0.000 0.000 0.620 0.000 0.348 0.032
#> SRR1201861 3 0.4319 0.5188 0.000 0.000 0.620 0.000 0.348 0.032
#> SRR1201862 3 0.4264 0.5130 0.000 0.000 0.620 0.000 0.352 0.028
#> SRR1201863 3 0.4264 0.5130 0.000 0.000 0.620 0.000 0.352 0.028
#> SRR1201859 5 0.1938 0.8698 0.000 0.000 0.040 0.036 0.920 0.004
#> SRR1201864 3 0.4264 0.5130 0.000 0.000 0.620 0.000 0.352 0.028
#> SRR1201860 3 0.4839 0.2762 0.000 0.000 0.508 0.012 0.448 0.032
#> SRR1201873 3 0.4066 0.6113 0.000 0.000 0.692 0.000 0.272 0.036
#> SRR1201871 5 0.1442 0.8848 0.000 0.000 0.040 0.012 0.944 0.004
#> SRR1201872 3 0.3956 0.6246 0.000 0.000 0.712 0.000 0.252 0.036
#> SRR1201980 3 0.4548 0.6146 0.000 0.000 0.672 0.000 0.080 0.248
#> SRR1201979 5 0.0146 0.9068 0.000 0.000 0.004 0.000 0.996 0.000
#> SRR1201982 3 0.4749 0.5152 0.000 0.000 0.648 0.000 0.092 0.260
#> SRR1201981 5 0.0000 0.9070 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1201998 6 0.3393 0.8027 0.000 0.004 0.108 0.000 0.068 0.820
#> SRR1201996 5 0.0692 0.9036 0.000 0.000 0.020 0.000 0.976 0.004
#> SRR1201997 6 0.2830 0.8138 0.000 0.004 0.068 0.000 0.064 0.864
#> SRR1202005 5 0.3473 0.7348 0.000 0.136 0.012 0.000 0.812 0.040
#> SRR1202006 6 0.4402 0.7748 0.000 0.120 0.048 0.000 0.068 0.764
#> SRR1202088 6 0.5642 0.5277 0.000 0.024 0.288 0.000 0.112 0.576
#> SRR1202087 5 0.2981 0.7596 0.000 0.000 0.160 0.000 0.820 0.020
#> SRR1202093 6 0.2466 0.8197 0.000 0.028 0.024 0.000 0.052 0.896
#> SRR1202092 5 0.1196 0.9017 0.000 0.000 0.008 0.000 0.952 0.040
#> SRR1202288 5 0.1204 0.8967 0.000 0.000 0.000 0.000 0.944 0.056
#> SRR1202289 2 0.2491 0.8393 0.000 0.836 0.000 0.000 0.000 0.164
#> SRR1202299 2 0.1663 0.8943 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1202298 5 0.0547 0.9064 0.000 0.000 0.000 0.000 0.980 0.020
#> SRR1202303 4 0.0000 0.8524 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1202372 2 0.3230 0.7946 0.000 0.776 0.012 0.000 0.000 0.212
#> SRR1202371 5 0.1204 0.8967 0.000 0.000 0.000 0.000 0.944 0.056
#> SRR1202563 5 0.2485 0.8484 0.000 0.000 0.040 0.056 0.892 0.012
#> SRR1202565 6 0.2393 0.8211 0.000 0.004 0.040 0.000 0.064 0.892
#> SRR1202564 6 0.2322 0.8202 0.000 0.004 0.036 0.000 0.064 0.896
#> SRR1202649 5 0.2675 0.8330 0.000 0.000 0.040 0.076 0.876 0.008
#> SRR1202650 5 0.0146 0.9074 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1202651 6 0.4058 0.8108 0.000 0.056 0.064 0.000 0.084 0.796
#> SRR1202843 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202845 5 0.2294 0.8470 0.000 0.000 0.000 0.072 0.892 0.036
#> SRR1202847 6 0.5200 0.4941 0.000 0.004 0.068 0.020 0.280 0.628
#> SRR1202846 6 0.5168 0.4943 0.000 0.004 0.064 0.020 0.284 0.628
#> SRR1202945 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0146 0.9952 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1202977 1 0.0291 0.9922 0.992 0.000 0.000 0.004 0.000 0.004
#> SRR1202978 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0146 0.9952 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1202999 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.1340 0.9507 0.948 0.000 0.000 0.040 0.004 0.008
#> SRR1203008 1 0.1340 0.9507 0.948 0.000 0.000 0.040 0.004 0.008
#> SRR1203010 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.5113 0.5822 0.000 0.000 0.628 0.000 0.204 0.168
#> SRR1203131 5 0.0000 0.9070 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1203133 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0146 0.9952 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203772 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0146 0.9952 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203805 1 0.0146 0.9952 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203806 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0717 0.9781 0.976 0.000 0.000 0.016 0.000 0.008
#> SRR1203813 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0260 0.9913 0.992 0.000 0.000 0.008 0.000 0.000
#> SRR1203827 4 0.2698 0.8180 0.000 0.000 0.040 0.880 0.016 0.064
#> SRR1203828 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0146 0.9952 0.996 0.000 0.000 0.000 0.000 0.004
#> SRR1203833 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203842 4 0.2840 0.8168 0.004 0.000 0.040 0.876 0.016 0.064
#> SRR1203843 1 0.0000 0.9978 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203845 6 0.4970 0.6175 0.000 0.248 0.016 0.000 0.080 0.656
#> SRR1203844 5 0.1075 0.8985 0.000 0.000 0.000 0.000 0.952 0.048
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["CV", "NMF"]
# you can also extract it by
# res = res_list["CV:NMF"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'CV' method.
#> Subgroups are detected by 'NMF' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 2.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 0.982 0.993 0.3835 0.614 0.614
#> 3 3 0.746 0.871 0.936 0.4836 0.822 0.711
#> 4 4 0.590 0.711 0.800 0.1898 0.863 0.703
#> 5 5 0.664 0.677 0.806 0.0951 0.833 0.557
#> 6 6 0.736 0.679 0.819 0.0463 0.913 0.677
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 2
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0.0000 0.997 0.000 1.000
#> SRR1201590 2 0.0000 0.997 0.000 1.000
#> SRR1201593 2 0.0000 0.997 0.000 1.000
#> SRR1201592 2 0.0000 0.997 0.000 1.000
#> SRR1201617 2 0.0000 0.997 0.000 1.000
#> SRR1201616 2 0.0000 0.997 0.000 1.000
#> SRR1201619 2 0.0000 0.997 0.000 1.000
#> SRR1201618 2 0.0000 0.997 0.000 1.000
#> SRR1201620 2 0.0000 0.997 0.000 1.000
#> SRR1201621 2 0.0000 0.997 0.000 1.000
#> SRR1201623 2 0.0000 0.997 0.000 1.000
#> SRR1201622 2 0.0000 0.997 0.000 1.000
#> SRR1201624 2 0.7528 0.716 0.216 0.784
#> SRR1201625 2 0.0000 0.997 0.000 1.000
#> SRR1201626 1 0.9686 0.357 0.604 0.396
#> SRR1201627 2 0.0000 0.997 0.000 1.000
#> SRR1201628 2 0.0000 0.997 0.000 1.000
#> SRR1201629 2 0.0000 0.997 0.000 1.000
#> SRR1201630 2 0.0000 0.997 0.000 1.000
#> SRR1201631 2 0.0000 0.997 0.000 1.000
#> SRR1201641 2 0.0000 0.997 0.000 1.000
#> SRR1201640 2 0.0000 0.997 0.000 1.000
#> SRR1201643 2 0.0000 0.997 0.000 1.000
#> SRR1201644 2 0.0000 0.997 0.000 1.000
#> SRR1201661 2 0.0000 0.997 0.000 1.000
#> SRR1201662 2 0.0000 0.997 0.000 1.000
#> SRR1201663 2 0.0000 0.997 0.000 1.000
#> SRR1201664 2 0.0000 0.997 0.000 1.000
#> SRR1201665 2 0.0000 0.997 0.000 1.000
#> SRR1201666 2 0.0000 0.997 0.000 1.000
#> SRR1201667 2 0.0000 0.997 0.000 1.000
#> SRR1201668 2 0.0000 0.997 0.000 1.000
#> SRR1201670 2 0.0000 0.997 0.000 1.000
#> SRR1201669 2 0.0000 0.997 0.000 1.000
#> SRR1201673 2 0.0000 0.997 0.000 1.000
#> SRR1201672 2 0.0000 0.997 0.000 1.000
#> SRR1201671 2 0.0000 0.997 0.000 1.000
#> SRR1201677 2 0.0000 0.997 0.000 1.000
#> SRR1201676 2 0.0000 0.997 0.000 1.000
#> SRR1201675 2 0.0000 0.997 0.000 1.000
#> SRR1201674 2 0.0000 0.997 0.000 1.000
#> SRR1201678 2 0.0000 0.997 0.000 1.000
#> SRR1201682 2 0.0000 0.997 0.000 1.000
#> SRR1201683 2 0.0000 0.997 0.000 1.000
#> SRR1201680 2 0.0000 0.997 0.000 1.000
#> SRR1201681 2 0.0000 0.997 0.000 1.000
#> SRR1201679 2 0.0000 0.997 0.000 1.000
#> SRR1201686 2 0.0000 0.997 0.000 1.000
#> SRR1201687 2 0.0000 0.997 0.000 1.000
#> SRR1201688 2 0.0000 0.997 0.000 1.000
#> SRR1201689 2 0.0000 0.997 0.000 1.000
#> SRR1201685 2 0.0000 0.997 0.000 1.000
#> SRR1201692 2 0.0000 0.997 0.000 1.000
#> SRR1201691 2 0.0000 0.997 0.000 1.000
#> SRR1201690 2 0.0000 0.997 0.000 1.000
#> SRR1201696 2 0.0000 0.997 0.000 1.000
#> SRR1201695 2 0.0000 0.997 0.000 1.000
#> SRR1201694 2 0.0000 0.997 0.000 1.000
#> SRR1201693 2 0.0000 0.997 0.000 1.000
#> SRR1201697 2 0.0000 0.997 0.000 1.000
#> SRR1201698 2 0.0000 0.997 0.000 1.000
#> SRR1201700 2 0.0000 0.997 0.000 1.000
#> SRR1201708 2 0.0000 0.997 0.000 1.000
#> SRR1201707 2 0.0000 0.997 0.000 1.000
#> SRR1201706 2 0.0000 0.997 0.000 1.000
#> SRR1201702 2 0.0000 0.997 0.000 1.000
#> SRR1201705 2 0.0000 0.997 0.000 1.000
#> SRR1201701 2 0.0000 0.997 0.000 1.000
#> SRR1201704 2 0.0000 0.997 0.000 1.000
#> SRR1201703 2 0.0000 0.997 0.000 1.000
#> SRR1201716 2 0.0000 0.997 0.000 1.000
#> SRR1201715 2 0.0000 0.997 0.000 1.000
#> SRR1201717 2 0.0000 0.997 0.000 1.000
#> SRR1201712 2 0.0000 0.997 0.000 1.000
#> SRR1201709 2 0.0000 0.997 0.000 1.000
#> SRR1201711 2 0.0000 0.997 0.000 1.000
#> SRR1201714 2 0.0000 0.997 0.000 1.000
#> SRR1201713 2 0.0000 0.997 0.000 1.000
#> SRR1201710 2 0.0000 0.997 0.000 1.000
#> SRR1201719 2 0.0000 0.997 0.000 1.000
#> SRR1201718 2 0.0000 0.997 0.000 1.000
#> SRR1201721 2 0.0000 0.997 0.000 1.000
#> SRR1201720 2 0.0000 0.997 0.000 1.000
#> SRR1201723 2 0.0000 0.997 0.000 1.000
#> SRR1201722 2 0.0000 0.997 0.000 1.000
#> SRR1201725 2 0.0000 0.997 0.000 1.000
#> SRR1201724 2 0.0000 0.997 0.000 1.000
#> SRR1201726 2 0.0000 0.997 0.000 1.000
#> SRR1201727 2 0.0000 0.997 0.000 1.000
#> SRR1201731 2 0.0000 0.997 0.000 1.000
#> SRR1201730 2 0.0000 0.997 0.000 1.000
#> SRR1201734 2 0.0000 0.997 0.000 1.000
#> SRR1201733 2 0.0000 0.997 0.000 1.000
#> SRR1201736 2 0.0000 0.997 0.000 1.000
#> SRR1201737 2 0.0000 0.997 0.000 1.000
#> SRR1201739 2 0.0000 0.997 0.000 1.000
#> SRR1201738 2 0.0000 0.997 0.000 1.000
#> SRR1201742 2 0.0000 0.997 0.000 1.000
#> SRR1201743 2 0.0000 0.997 0.000 1.000
#> SRR1201745 2 0.0000 0.997 0.000 1.000
#> SRR1201744 2 0.0000 0.997 0.000 1.000
#> SRR1201749 2 0.0000 0.997 0.000 1.000
#> SRR1201750 2 0.0000 0.997 0.000 1.000
#> SRR1201752 2 0.0000 0.997 0.000 1.000
#> SRR1201751 2 0.0000 0.997 0.000 1.000
#> SRR1201754 2 0.0000 0.997 0.000 1.000
#> SRR1201753 2 0.0000 0.997 0.000 1.000
#> SRR1201758 2 0.0000 0.997 0.000 1.000
#> SRR1201759 2 0.0000 0.997 0.000 1.000
#> SRR1201760 2 0.0000 0.997 0.000 1.000
#> SRR1201761 2 0.0000 0.997 0.000 1.000
#> SRR1201763 2 0.0000 0.997 0.000 1.000
#> SRR1201762 1 0.9998 0.050 0.508 0.492
#> SRR1201764 2 0.0672 0.989 0.008 0.992
#> SRR1201766 2 0.0000 0.997 0.000 1.000
#> SRR1201768 2 0.0000 0.997 0.000 1.000
#> SRR1201769 2 0.0000 0.997 0.000 1.000
#> SRR1201767 2 0.0000 0.997 0.000 1.000
#> SRR1201770 2 0.0000 0.997 0.000 1.000
#> SRR1201771 2 0.0000 0.997 0.000 1.000
#> SRR1201772 2 0.0000 0.997 0.000 1.000
#> SRR1201773 2 0.0000 0.997 0.000 1.000
#> SRR1201774 2 0.0000 0.997 0.000 1.000
#> SRR1201786 2 0.0000 0.997 0.000 1.000
#> SRR1201784 2 0.0000 0.997 0.000 1.000
#> SRR1201785 2 0.0000 0.997 0.000 1.000
#> SRR1201778 2 0.0000 0.997 0.000 1.000
#> SRR1201779 2 0.0000 0.997 0.000 1.000
#> SRR1201781 2 0.0000 0.997 0.000 1.000
#> SRR1201780 2 0.0000 0.997 0.000 1.000
#> SRR1201783 2 0.0000 0.997 0.000 1.000
#> SRR1201782 2 0.0000 0.997 0.000 1.000
#> SRR1201798 2 0.0000 0.997 0.000 1.000
#> SRR1201797 2 0.0000 0.997 0.000 1.000
#> SRR1201796 2 0.0000 0.997 0.000 1.000
#> SRR1201795 2 0.0000 0.997 0.000 1.000
#> SRR1201799 2 0.0000 0.997 0.000 1.000
#> SRR1201794 2 0.0000 0.997 0.000 1.000
#> SRR1201793 2 0.0000 0.997 0.000 1.000
#> SRR1201792 2 0.0000 0.997 0.000 1.000
#> SRR1201791 2 0.0000 0.997 0.000 1.000
#> SRR1201807 2 0.0000 0.997 0.000 1.000
#> SRR1201808 2 0.0000 0.997 0.000 1.000
#> SRR1201803 2 0.0000 0.997 0.000 1.000
#> SRR1201804 2 0.0000 0.997 0.000 1.000
#> SRR1201805 2 0.0000 0.997 0.000 1.000
#> SRR1201806 2 0.0000 0.997 0.000 1.000
#> SRR1201801 2 0.0000 0.997 0.000 1.000
#> SRR1201802 2 0.0000 0.997 0.000 1.000
#> SRR1201800 2 0.0000 0.997 0.000 1.000
#> SRR1201814 2 0.0000 0.997 0.000 1.000
#> SRR1201816 2 0.0000 0.997 0.000 1.000
#> SRR1201815 2 0.0000 0.997 0.000 1.000
#> SRR1201819 2 0.0000 0.997 0.000 1.000
#> SRR1201820 2 0.0000 0.997 0.000 1.000
#> SRR1201813 2 0.0000 0.997 0.000 1.000
#> SRR1201817 2 0.0000 0.997 0.000 1.000
#> SRR1201818 2 0.0000 0.997 0.000 1.000
#> SRR1201825 2 0.0000 0.997 0.000 1.000
#> SRR1201827 2 0.0000 0.997 0.000 1.000
#> SRR1201828 2 0.0000 0.997 0.000 1.000
#> SRR1201826 2 0.0000 0.997 0.000 1.000
#> SRR1201829 2 0.0000 0.997 0.000 1.000
#> SRR1201830 2 0.0000 0.997 0.000 1.000
#> SRR1201831 2 0.0000 0.997 0.000 1.000
#> SRR1201832 2 0.0000 0.997 0.000 1.000
#> SRR1201833 2 0.0000 0.997 0.000 1.000
#> SRR1201865 2 0.0000 0.997 0.000 1.000
#> SRR1201866 2 0.0000 0.997 0.000 1.000
#> SRR1201867 2 0.0000 0.997 0.000 1.000
#> SRR1201861 2 0.0000 0.997 0.000 1.000
#> SRR1201862 2 0.0000 0.997 0.000 1.000
#> SRR1201863 2 0.0000 0.997 0.000 1.000
#> SRR1201859 2 0.0000 0.997 0.000 1.000
#> SRR1201864 2 0.0000 0.997 0.000 1.000
#> SRR1201860 2 0.0000 0.997 0.000 1.000
#> SRR1201873 2 0.0000 0.997 0.000 1.000
#> SRR1201871 2 0.0000 0.997 0.000 1.000
#> SRR1201872 2 0.0000 0.997 0.000 1.000
#> SRR1201980 2 0.0000 0.997 0.000 1.000
#> SRR1201979 2 0.0000 0.997 0.000 1.000
#> SRR1201982 2 0.0000 0.997 0.000 1.000
#> SRR1201981 2 0.0000 0.997 0.000 1.000
#> SRR1201998 2 0.0000 0.997 0.000 1.000
#> SRR1201996 2 0.0000 0.997 0.000 1.000
#> SRR1201997 2 0.0000 0.997 0.000 1.000
#> SRR1202005 2 0.0000 0.997 0.000 1.000
#> SRR1202006 2 0.0000 0.997 0.000 1.000
#> SRR1202088 2 0.0000 0.997 0.000 1.000
#> SRR1202087 2 0.0000 0.997 0.000 1.000
#> SRR1202093 2 0.0000 0.997 0.000 1.000
#> SRR1202092 2 0.0000 0.997 0.000 1.000
#> SRR1202288 2 0.0000 0.997 0.000 1.000
#> SRR1202289 2 0.0000 0.997 0.000 1.000
#> SRR1202299 2 0.0000 0.997 0.000 1.000
#> SRR1202298 2 0.0000 0.997 0.000 1.000
#> SRR1202303 2 0.0000 0.997 0.000 1.000
#> SRR1202372 2 0.0000 0.997 0.000 1.000
#> SRR1202371 2 0.0000 0.997 0.000 1.000
#> SRR1202563 2 0.0000 0.997 0.000 1.000
#> SRR1202565 2 0.0000 0.997 0.000 1.000
#> SRR1202564 2 0.0000 0.997 0.000 1.000
#> SRR1202649 2 0.0000 0.997 0.000 1.000
#> SRR1202650 2 0.0000 0.997 0.000 1.000
#> SRR1202651 2 0.0000 0.997 0.000 1.000
#> SRR1202843 1 0.0000 0.981 1.000 0.000
#> SRR1202844 1 0.0000 0.981 1.000 0.000
#> SRR1202845 2 0.0000 0.997 0.000 1.000
#> SRR1202847 2 0.0000 0.997 0.000 1.000
#> SRR1202846 2 0.0000 0.997 0.000 1.000
#> SRR1202945 1 0.0000 0.981 1.000 0.000
#> SRR1202949 1 0.0000 0.981 1.000 0.000
#> SRR1202977 1 0.0000 0.981 1.000 0.000
#> SRR1202978 1 0.0000 0.981 1.000 0.000
#> SRR1202979 1 0.0000 0.981 1.000 0.000
#> SRR1202990 1 0.0000 0.981 1.000 0.000
#> SRR1202999 1 0.0000 0.981 1.000 0.000
#> SRR1203005 1 0.0000 0.981 1.000 0.000
#> SRR1203006 1 0.0000 0.981 1.000 0.000
#> SRR1203007 1 0.0000 0.981 1.000 0.000
#> SRR1203009 1 0.2778 0.935 0.952 0.048
#> SRR1203008 1 0.3114 0.927 0.944 0.056
#> SRR1203010 1 0.0000 0.981 1.000 0.000
#> SRR1203011 1 0.0000 0.981 1.000 0.000
#> SRR1203025 1 0.0000 0.981 1.000 0.000
#> SRR1203026 1 0.0000 0.981 1.000 0.000
#> SRR1203027 1 0.0000 0.981 1.000 0.000
#> SRR1203061 1 0.0000 0.981 1.000 0.000
#> SRR1203089 1 0.0000 0.981 1.000 0.000
#> SRR1203125 1 0.0000 0.981 1.000 0.000
#> SRR1203128 1 0.0000 0.981 1.000 0.000
#> SRR1203129 1 0.0000 0.981 1.000 0.000
#> SRR1203130 1 0.0000 0.981 1.000 0.000
#> SRR1203132 2 0.0000 0.997 0.000 1.000
#> SRR1203131 2 0.0000 0.997 0.000 1.000
#> SRR1203133 1 0.0000 0.981 1.000 0.000
#> SRR1203138 1 0.0000 0.981 1.000 0.000
#> SRR1203760 1 0.0000 0.981 1.000 0.000
#> SRR1203761 1 0.0000 0.981 1.000 0.000
#> SRR1203770 1 0.0000 0.981 1.000 0.000
#> SRR1203771 1 0.0000 0.981 1.000 0.000
#> SRR1203772 1 0.0000 0.981 1.000 0.000
#> SRR1203773 1 0.0000 0.981 1.000 0.000
#> SRR1203774 1 0.0000 0.981 1.000 0.000
#> SRR1203775 1 0.0000 0.981 1.000 0.000
#> SRR1203800 1 0.0000 0.981 1.000 0.000
#> SRR1203801 1 0.0000 0.981 1.000 0.000
#> SRR1203802 1 0.0000 0.981 1.000 0.000
#> SRR1203803 1 0.0000 0.981 1.000 0.000
#> SRR1203804 1 0.0000 0.981 1.000 0.000
#> SRR1203805 1 0.0000 0.981 1.000 0.000
#> SRR1203806 1 0.0000 0.981 1.000 0.000
#> SRR1203807 1 0.0000 0.981 1.000 0.000
#> SRR1203808 1 0.0000 0.981 1.000 0.000
#> SRR1203811 1 0.0000 0.981 1.000 0.000
#> SRR1203812 1 0.0000 0.981 1.000 0.000
#> SRR1203813 1 0.0000 0.981 1.000 0.000
#> SRR1203814 1 0.0000 0.981 1.000 0.000
#> SRR1203815 1 0.0000 0.981 1.000 0.000
#> SRR1203816 1 0.0000 0.981 1.000 0.000
#> SRR1203817 1 0.0000 0.981 1.000 0.000
#> SRR1203818 1 0.0000 0.981 1.000 0.000
#> SRR1203819 1 0.0000 0.981 1.000 0.000
#> SRR1203822 1 0.0000 0.981 1.000 0.000
#> SRR1203823 1 0.0000 0.981 1.000 0.000
#> SRR1203824 1 0.0000 0.981 1.000 0.000
#> SRR1203825 1 0.0000 0.981 1.000 0.000
#> SRR1203826 1 0.0000 0.981 1.000 0.000
#> SRR1203827 2 0.9358 0.440 0.352 0.648
#> SRR1203828 1 0.0000 0.981 1.000 0.000
#> SRR1203829 1 0.0000 0.981 1.000 0.000
#> SRR1203830 1 0.0000 0.981 1.000 0.000
#> SRR1203831 1 0.0000 0.981 1.000 0.000
#> SRR1203832 1 0.0000 0.981 1.000 0.000
#> SRR1203833 1 0.0000 0.981 1.000 0.000
#> SRR1203834 1 0.0000 0.981 1.000 0.000
#> SRR1203835 1 0.0000 0.981 1.000 0.000
#> SRR1203836 1 0.0000 0.981 1.000 0.000
#> SRR1203837 1 0.0000 0.981 1.000 0.000
#> SRR1203838 1 0.0000 0.981 1.000 0.000
#> SRR1203839 1 0.0000 0.981 1.000 0.000
#> SRR1203842 1 0.9710 0.347 0.600 0.400
#> SRR1203843 1 0.0000 0.981 1.000 0.000
#> SRR1203845 2 0.0000 0.997 0.000 1.000
#> SRR1203844 2 0.0000 0.997 0.000 1.000
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201590 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201593 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201592 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201617 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201616 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201619 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201618 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201620 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201621 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201623 2 0.3340 0.8496 0.000 0.880 0.120
#> SRR1201622 2 0.4452 0.7889 0.000 0.808 0.192
#> SRR1201624 3 0.3412 0.7003 0.124 0.000 0.876
#> SRR1201625 3 0.0000 0.8328 0.000 0.000 1.000
#> SRR1201626 3 0.4291 0.6245 0.180 0.000 0.820
#> SRR1201627 3 0.0000 0.8328 0.000 0.000 1.000
#> SRR1201628 2 0.4504 0.7848 0.000 0.804 0.196
#> SRR1201629 2 0.4796 0.7499 0.000 0.780 0.220
#> SRR1201630 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201631 2 0.0424 0.9130 0.000 0.992 0.008
#> SRR1201641 2 0.1031 0.9072 0.000 0.976 0.024
#> SRR1201640 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201643 2 0.4235 0.8050 0.000 0.824 0.176
#> SRR1201644 2 0.3267 0.8526 0.000 0.884 0.116
#> SRR1201661 2 0.1643 0.8980 0.000 0.956 0.044
#> SRR1201662 2 0.1163 0.9054 0.000 0.972 0.028
#> SRR1201663 2 0.6111 0.3988 0.000 0.604 0.396
#> SRR1201664 3 0.2625 0.8423 0.000 0.084 0.916
#> SRR1201665 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201666 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201667 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201668 2 0.3192 0.8565 0.000 0.888 0.112
#> SRR1201670 3 0.2261 0.8420 0.000 0.068 0.932
#> SRR1201669 3 0.2796 0.8419 0.000 0.092 0.908
#> SRR1201673 2 0.1163 0.9026 0.000 0.972 0.028
#> SRR1201672 2 0.0892 0.9073 0.000 0.980 0.020
#> SRR1201671 2 0.0592 0.9119 0.000 0.988 0.012
#> SRR1201677 2 0.1163 0.9026 0.000 0.972 0.028
#> SRR1201676 2 0.1031 0.9050 0.000 0.976 0.024
#> SRR1201675 2 0.1031 0.9050 0.000 0.976 0.024
#> SRR1201674 2 0.0892 0.9073 0.000 0.980 0.020
#> SRR1201678 2 0.0747 0.9094 0.000 0.984 0.016
#> SRR1201682 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201683 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201680 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201681 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201679 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201686 3 0.0237 0.8348 0.000 0.004 0.996
#> SRR1201687 3 0.0237 0.8348 0.000 0.004 0.996
#> SRR1201688 3 0.0237 0.8348 0.000 0.004 0.996
#> SRR1201689 3 0.0237 0.8348 0.000 0.004 0.996
#> SRR1201685 2 0.6126 0.3900 0.000 0.600 0.400
#> SRR1201692 2 0.5591 0.6127 0.000 0.696 0.304
#> SRR1201691 2 0.5291 0.6784 0.000 0.732 0.268
#> SRR1201690 2 0.4654 0.7707 0.000 0.792 0.208
#> SRR1201696 2 0.5058 0.7167 0.000 0.756 0.244
#> SRR1201695 2 0.5497 0.6349 0.000 0.708 0.292
#> SRR1201694 2 0.5058 0.7160 0.000 0.756 0.244
#> SRR1201693 2 0.5560 0.6225 0.000 0.700 0.300
#> SRR1201697 2 0.5650 0.5951 0.000 0.688 0.312
#> SRR1201698 2 0.4931 0.7337 0.000 0.768 0.232
#> SRR1201700 2 0.4178 0.8084 0.000 0.828 0.172
#> SRR1201708 3 0.4399 0.8074 0.000 0.188 0.812
#> SRR1201707 3 0.4291 0.8143 0.000 0.180 0.820
#> SRR1201706 3 0.4235 0.8175 0.000 0.176 0.824
#> SRR1201702 3 0.4178 0.8200 0.000 0.172 0.828
#> SRR1201705 3 0.4235 0.8175 0.000 0.176 0.824
#> SRR1201701 3 0.4121 0.8222 0.000 0.168 0.832
#> SRR1201704 3 0.4178 0.8202 0.000 0.172 0.828
#> SRR1201703 3 0.4121 0.8222 0.000 0.168 0.832
#> SRR1201716 3 0.4931 0.7550 0.000 0.232 0.768
#> SRR1201715 3 0.4842 0.7664 0.000 0.224 0.776
#> SRR1201717 3 0.4887 0.7602 0.000 0.228 0.772
#> SRR1201712 3 0.5138 0.7246 0.000 0.252 0.748
#> SRR1201709 2 0.5650 0.6045 0.000 0.688 0.312
#> SRR1201711 3 0.4931 0.7565 0.000 0.232 0.768
#> SRR1201714 3 0.5138 0.7246 0.000 0.252 0.748
#> SRR1201713 3 0.4974 0.7494 0.000 0.236 0.764
#> SRR1201710 3 0.5178 0.7177 0.000 0.256 0.744
#> SRR1201719 2 0.1289 0.9036 0.000 0.968 0.032
#> SRR1201718 2 0.0892 0.9090 0.000 0.980 0.020
#> SRR1201721 3 0.6286 0.1637 0.000 0.464 0.536
#> SRR1201720 2 0.4504 0.7848 0.000 0.804 0.196
#> SRR1201723 3 0.0237 0.8348 0.000 0.004 0.996
#> SRR1201722 2 0.6111 0.3988 0.000 0.604 0.396
#> SRR1201725 2 0.2796 0.8734 0.000 0.908 0.092
#> SRR1201724 2 0.3941 0.8229 0.000 0.844 0.156
#> SRR1201726 2 0.3619 0.8395 0.000 0.864 0.136
#> SRR1201727 3 0.1163 0.8387 0.000 0.028 0.972
#> SRR1201731 3 0.4931 0.7635 0.000 0.232 0.768
#> SRR1201730 2 0.3752 0.8313 0.000 0.856 0.144
#> SRR1201734 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201733 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201736 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201737 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201739 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201738 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201742 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201743 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201745 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201744 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201749 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201750 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201752 2 0.3686 0.8358 0.000 0.860 0.140
#> SRR1201751 2 0.4504 0.7848 0.000 0.804 0.196
#> SRR1201754 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201753 2 0.1860 0.8943 0.000 0.948 0.052
#> SRR1201758 2 0.6305 0.0808 0.000 0.516 0.484
#> SRR1201759 3 0.0237 0.8348 0.000 0.004 0.996
#> SRR1201760 2 0.3941 0.8229 0.000 0.844 0.156
#> SRR1201761 2 0.5016 0.7226 0.000 0.760 0.240
#> SRR1201763 3 0.0000 0.8328 0.000 0.000 1.000
#> SRR1201762 3 0.4504 0.6018 0.196 0.000 0.804
#> SRR1201764 3 0.6225 0.2616 0.000 0.432 0.568
#> SRR1201766 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201768 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201769 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201767 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201770 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201771 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201772 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201773 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201774 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201786 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201784 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201785 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201778 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201779 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201781 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201780 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201783 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201782 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201798 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201797 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201796 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201795 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201799 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201794 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201793 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201792 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201791 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201807 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201808 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201803 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201804 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201805 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201806 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201801 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201802 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201800 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201814 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201816 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201815 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201819 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201820 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201813 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201817 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201818 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1201825 2 0.4504 0.7848 0.000 0.804 0.196
#> SRR1201827 3 0.0000 0.8328 0.000 0.000 1.000
#> SRR1201828 3 0.0000 0.8328 0.000 0.000 1.000
#> SRR1201826 2 0.5760 0.5733 0.000 0.672 0.328
#> SRR1201829 3 0.0000 0.8328 0.000 0.000 1.000
#> SRR1201830 3 0.0000 0.8328 0.000 0.000 1.000
#> SRR1201831 3 0.0000 0.8328 0.000 0.000 1.000
#> SRR1201832 3 0.0000 0.8328 0.000 0.000 1.000
#> SRR1201833 3 0.0000 0.8328 0.000 0.000 1.000
#> SRR1201865 2 0.4002 0.8174 0.000 0.840 0.160
#> SRR1201866 2 0.4002 0.8174 0.000 0.840 0.160
#> SRR1201867 2 0.4062 0.8139 0.000 0.836 0.164
#> SRR1201861 2 0.4062 0.8139 0.000 0.836 0.164
#> SRR1201862 2 0.4062 0.8139 0.000 0.836 0.164
#> SRR1201863 2 0.4002 0.8174 0.000 0.840 0.160
#> SRR1201859 2 0.0592 0.9123 0.000 0.988 0.012
#> SRR1201864 2 0.4178 0.8073 0.000 0.828 0.172
#> SRR1201860 2 0.4235 0.8041 0.000 0.824 0.176
#> SRR1201873 2 0.5968 0.4845 0.000 0.636 0.364
#> SRR1201871 2 0.4399 0.7938 0.000 0.812 0.188
#> SRR1201872 2 0.6062 0.4344 0.000 0.616 0.384
#> SRR1201980 2 0.5363 0.6647 0.000 0.724 0.276
#> SRR1201979 2 0.2165 0.8880 0.000 0.936 0.064
#> SRR1201982 2 0.4796 0.7502 0.000 0.780 0.220
#> SRR1201981 2 0.4178 0.8083 0.000 0.828 0.172
#> SRR1201998 2 0.2356 0.8823 0.000 0.928 0.072
#> SRR1201996 2 0.0892 0.9089 0.000 0.980 0.020
#> SRR1201997 2 0.2066 0.8894 0.000 0.940 0.060
#> SRR1202005 2 0.0237 0.9141 0.000 0.996 0.004
#> SRR1202006 2 0.0424 0.9130 0.000 0.992 0.008
#> SRR1202088 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1202087 2 0.0592 0.9123 0.000 0.988 0.012
#> SRR1202093 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1202092 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1202288 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1202289 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1202299 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1202298 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1202303 3 0.0000 0.8328 0.000 0.000 1.000
#> SRR1202372 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1202371 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1202563 2 0.2959 0.8678 0.000 0.900 0.100
#> SRR1202565 2 0.0237 0.9140 0.000 0.996 0.004
#> SRR1202564 2 0.0237 0.9140 0.000 0.996 0.004
#> SRR1202649 2 0.1964 0.8934 0.000 0.944 0.056
#> SRR1202650 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1202651 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1202843 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1202845 2 0.3116 0.8592 0.000 0.892 0.108
#> SRR1202847 2 0.2066 0.8894 0.000 0.940 0.060
#> SRR1202846 2 0.2165 0.8871 0.000 0.936 0.064
#> SRR1202945 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203009 1 0.1636 0.9512 0.964 0.016 0.020
#> SRR1203008 1 0.2926 0.9081 0.924 0.040 0.036
#> SRR1203010 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203132 2 0.6008 0.4595 0.000 0.628 0.372
#> SRR1203131 2 0.4504 0.7848 0.000 0.804 0.196
#> SRR1203133 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203827 2 0.5902 0.5151 0.316 0.680 0.004
#> SRR1203828 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203842 1 0.6204 0.1709 0.576 0.424 0.000
#> SRR1203843 1 0.0000 0.9894 1.000 0.000 0.000
#> SRR1203845 2 0.0000 0.9151 0.000 1.000 0.000
#> SRR1203844 2 0.0000 0.9151 0.000 1.000 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.1724 0.7564 0.000 0.948 0.032 0.020
#> SRR1201590 2 0.4767 0.5780 0.000 0.724 0.256 0.020
#> SRR1201593 2 0.1510 0.7590 0.000 0.956 0.016 0.028
#> SRR1201592 2 0.4079 0.6583 0.000 0.800 0.180 0.020
#> SRR1201617 2 0.0937 0.7620 0.000 0.976 0.012 0.012
#> SRR1201616 2 0.4035 0.6608 0.000 0.804 0.176 0.020
#> SRR1201619 2 0.4532 0.7300 0.000 0.792 0.156 0.052
#> SRR1201618 2 0.5428 0.3530 0.000 0.600 0.380 0.020
#> SRR1201620 2 0.4323 0.6372 0.000 0.776 0.204 0.020
#> SRR1201621 2 0.1209 0.7656 0.000 0.964 0.032 0.004
#> SRR1201623 2 0.5973 0.5719 0.000 0.612 0.332 0.056
#> SRR1201622 3 0.3999 0.6325 0.000 0.140 0.824 0.036
#> SRR1201624 3 0.5398 0.2550 0.016 0.000 0.580 0.404
#> SRR1201625 4 0.2704 0.5538 0.000 0.000 0.124 0.876
#> SRR1201626 4 0.3280 0.5275 0.016 0.000 0.124 0.860
#> SRR1201627 4 0.2300 0.6341 0.000 0.028 0.048 0.924
#> SRR1201628 3 0.4238 0.6150 0.000 0.176 0.796 0.028
#> SRR1201629 2 0.6027 0.6685 0.000 0.684 0.192 0.124
#> SRR1201630 2 0.5337 0.4316 0.000 0.564 0.424 0.012
#> SRR1201631 2 0.4405 0.7319 0.000 0.800 0.152 0.048
#> SRR1201641 2 0.4514 0.7273 0.000 0.796 0.148 0.056
#> SRR1201640 2 0.4877 0.5066 0.000 0.592 0.408 0.000
#> SRR1201643 3 0.5138 0.1404 0.000 0.392 0.600 0.008
#> SRR1201644 2 0.5122 0.7149 0.000 0.756 0.164 0.080
#> SRR1201661 2 0.5193 0.5056 0.000 0.580 0.412 0.008
#> SRR1201662 2 0.5141 0.6993 0.000 0.756 0.160 0.084
#> SRR1201663 3 0.3037 0.5984 0.000 0.020 0.880 0.100
#> SRR1201664 3 0.4289 0.5425 0.000 0.032 0.796 0.172
#> SRR1201665 2 0.5323 0.4136 0.000 0.628 0.352 0.020
#> SRR1201666 2 0.1388 0.7635 0.000 0.960 0.012 0.028
#> SRR1201667 2 0.1388 0.7656 0.000 0.960 0.012 0.028
#> SRR1201668 3 0.4595 0.5365 0.000 0.176 0.780 0.044
#> SRR1201670 3 0.4711 0.4793 0.000 0.024 0.740 0.236
#> SRR1201669 3 0.4644 0.4843 0.000 0.024 0.748 0.228
#> SRR1201673 2 0.5265 0.6933 0.000 0.748 0.160 0.092
#> SRR1201672 2 0.5141 0.6993 0.000 0.756 0.160 0.084
#> SRR1201671 3 0.5606 0.0394 0.000 0.480 0.500 0.020
#> SRR1201677 2 0.5204 0.6964 0.000 0.752 0.160 0.088
#> SRR1201676 2 0.5265 0.6933 0.000 0.748 0.160 0.092
#> SRR1201675 2 0.5265 0.6933 0.000 0.748 0.160 0.092
#> SRR1201674 2 0.5186 0.7009 0.000 0.752 0.164 0.084
#> SRR1201678 2 0.5141 0.6993 0.000 0.756 0.160 0.084
#> SRR1201682 2 0.5032 0.7050 0.000 0.764 0.156 0.080
#> SRR1201683 2 0.5032 0.7050 0.000 0.764 0.156 0.080
#> SRR1201680 2 0.5032 0.7050 0.000 0.764 0.156 0.080
#> SRR1201681 2 0.5032 0.7050 0.000 0.764 0.156 0.080
#> SRR1201679 2 0.4855 0.5605 0.000 0.712 0.268 0.020
#> SRR1201686 3 0.4053 0.5093 0.000 0.004 0.768 0.228
#> SRR1201687 3 0.4053 0.5093 0.000 0.004 0.768 0.228
#> SRR1201688 3 0.4053 0.5093 0.000 0.004 0.768 0.228
#> SRR1201689 3 0.4053 0.5093 0.000 0.004 0.768 0.228
#> SRR1201685 3 0.4353 0.5016 0.000 0.012 0.756 0.232
#> SRR1201692 2 0.6243 0.6351 0.000 0.668 0.172 0.160
#> SRR1201691 2 0.5849 0.6686 0.000 0.704 0.164 0.132
#> SRR1201690 3 0.3958 0.6273 0.000 0.160 0.816 0.024
#> SRR1201696 2 0.5883 0.6756 0.000 0.700 0.172 0.128
#> SRR1201695 2 0.6119 0.6448 0.000 0.680 0.168 0.152
#> SRR1201694 2 0.5972 0.6685 0.000 0.692 0.176 0.132
#> SRR1201693 2 0.6282 0.6382 0.000 0.664 0.176 0.160
#> SRR1201697 2 0.6204 0.6351 0.000 0.672 0.168 0.160
#> SRR1201698 2 0.5842 0.6699 0.000 0.704 0.168 0.128
#> SRR1201700 3 0.3625 0.6269 0.000 0.160 0.828 0.012
#> SRR1201708 4 0.7193 0.5548 0.000 0.240 0.208 0.552
#> SRR1201707 4 0.7034 0.5984 0.000 0.220 0.204 0.576
#> SRR1201706 4 0.6977 0.6108 0.000 0.212 0.204 0.584
#> SRR1201702 4 0.6917 0.6197 0.000 0.204 0.204 0.592
#> SRR1201705 4 0.7065 0.5996 0.000 0.216 0.212 0.572
#> SRR1201701 4 0.6854 0.6263 0.000 0.196 0.204 0.600
#> SRR1201704 4 0.7007 0.6084 0.000 0.208 0.212 0.580
#> SRR1201703 4 0.6883 0.6238 0.000 0.192 0.212 0.596
#> SRR1201716 3 0.6049 0.3741 0.000 0.120 0.680 0.200
#> SRR1201715 3 0.6184 0.3465 0.000 0.120 0.664 0.216
#> SRR1201717 3 0.5820 0.4173 0.000 0.108 0.700 0.192
#> SRR1201712 3 0.5823 0.4121 0.000 0.120 0.704 0.176
#> SRR1201709 3 0.3176 0.6111 0.000 0.036 0.880 0.084
#> SRR1201711 3 0.6152 0.3577 0.000 0.120 0.668 0.212
#> SRR1201714 3 0.6049 0.3785 0.000 0.120 0.680 0.200
#> SRR1201713 3 0.6184 0.3458 0.000 0.120 0.664 0.216
#> SRR1201710 3 0.5863 0.4068 0.000 0.120 0.700 0.180
#> SRR1201719 2 0.5141 0.6993 0.000 0.756 0.160 0.084
#> SRR1201718 2 0.4888 0.5049 0.000 0.588 0.412 0.000
#> SRR1201721 2 0.7072 0.4296 0.000 0.560 0.172 0.268
#> SRR1201720 3 0.3856 0.6335 0.000 0.136 0.832 0.032
#> SRR1201723 3 0.5284 0.4123 0.000 0.040 0.696 0.264
#> SRR1201722 3 0.3280 0.5901 0.000 0.016 0.860 0.124
#> SRR1201725 2 0.5440 0.6838 0.000 0.736 0.160 0.104
#> SRR1201724 2 0.5337 0.4705 0.000 0.564 0.424 0.012
#> SRR1201726 3 0.3377 0.6319 0.000 0.140 0.848 0.012
#> SRR1201727 4 0.6403 0.6188 0.000 0.112 0.260 0.628
#> SRR1201731 2 0.7282 0.1693 0.000 0.492 0.160 0.348
#> SRR1201730 3 0.4661 0.5392 0.000 0.256 0.728 0.016
#> SRR1201734 2 0.1256 0.7584 0.000 0.964 0.028 0.008
#> SRR1201733 2 0.4079 0.6581 0.000 0.800 0.180 0.020
#> SRR1201736 2 0.5600 0.0376 0.000 0.512 0.468 0.020
#> SRR1201737 2 0.2021 0.7659 0.000 0.936 0.024 0.040
#> SRR1201739 2 0.2521 0.7449 0.000 0.912 0.024 0.064
#> SRR1201738 2 0.4035 0.6609 0.000 0.804 0.176 0.020
#> SRR1201742 2 0.5414 0.3638 0.000 0.604 0.376 0.020
#> SRR1201743 2 0.4686 0.7242 0.000 0.788 0.144 0.068
#> SRR1201745 2 0.1474 0.7503 0.000 0.948 0.052 0.000
#> SRR1201744 2 0.4642 0.5968 0.000 0.740 0.240 0.020
#> SRR1201749 2 0.5213 0.4617 0.000 0.652 0.328 0.020
#> SRR1201750 2 0.3143 0.7598 0.000 0.876 0.100 0.024
#> SRR1201752 2 0.5527 0.6978 0.000 0.728 0.168 0.104
#> SRR1201751 3 0.4199 0.6233 0.000 0.164 0.804 0.032
#> SRR1201754 2 0.4174 0.7319 0.000 0.816 0.140 0.044
#> SRR1201753 2 0.5024 0.5906 0.000 0.632 0.360 0.008
#> SRR1201758 3 0.4040 0.4921 0.000 0.000 0.752 0.248
#> SRR1201759 3 0.4040 0.4870 0.000 0.000 0.752 0.248
#> SRR1201760 3 0.3895 0.6143 0.000 0.184 0.804 0.012
#> SRR1201761 2 0.6248 0.6504 0.000 0.656 0.224 0.120
#> SRR1201763 4 0.2443 0.6241 0.000 0.024 0.060 0.916
#> SRR1201762 4 0.5574 0.3368 0.048 0.000 0.284 0.668
#> SRR1201764 3 0.4500 0.4212 0.000 0.000 0.684 0.316
#> SRR1201766 2 0.4284 0.6398 0.000 0.780 0.200 0.020
#> SRR1201768 2 0.2021 0.7421 0.000 0.932 0.056 0.012
#> SRR1201769 2 0.1767 0.7468 0.000 0.944 0.044 0.012
#> SRR1201767 2 0.2376 0.7336 0.000 0.916 0.068 0.016
#> SRR1201770 2 0.1807 0.7456 0.000 0.940 0.052 0.008
#> SRR1201771 2 0.1890 0.7439 0.000 0.936 0.056 0.008
#> SRR1201772 2 0.2142 0.7395 0.000 0.928 0.056 0.016
#> SRR1201773 2 0.1635 0.7484 0.000 0.948 0.044 0.008
#> SRR1201774 2 0.2376 0.7336 0.000 0.916 0.068 0.016
#> SRR1201786 2 0.2843 0.7184 0.000 0.892 0.088 0.020
#> SRR1201784 2 0.2563 0.7276 0.000 0.908 0.072 0.020
#> SRR1201785 2 0.2706 0.7225 0.000 0.900 0.080 0.020
#> SRR1201778 2 0.4882 0.5552 0.000 0.708 0.272 0.020
#> SRR1201779 2 0.2706 0.7225 0.000 0.900 0.080 0.020
#> SRR1201781 2 0.2843 0.7184 0.000 0.892 0.088 0.020
#> SRR1201780 2 0.2843 0.7184 0.000 0.892 0.088 0.020
#> SRR1201783 2 0.2775 0.7212 0.000 0.896 0.084 0.020
#> SRR1201782 2 0.2775 0.7212 0.000 0.896 0.084 0.020
#> SRR1201798 2 0.2124 0.7552 0.000 0.932 0.028 0.040
#> SRR1201797 2 0.1833 0.7568 0.000 0.944 0.032 0.024
#> SRR1201796 2 0.2227 0.7538 0.000 0.928 0.036 0.036
#> SRR1201795 2 0.1733 0.7586 0.000 0.948 0.028 0.024
#> SRR1201799 2 0.2892 0.7435 0.000 0.896 0.036 0.068
#> SRR1201794 2 0.1837 0.7562 0.000 0.944 0.028 0.028
#> SRR1201793 2 0.2197 0.7516 0.000 0.928 0.024 0.048
#> SRR1201792 2 0.1837 0.7578 0.000 0.944 0.028 0.028
#> SRR1201791 2 0.3757 0.6764 0.000 0.828 0.152 0.020
#> SRR1201807 2 0.0592 0.7660 0.000 0.984 0.016 0.000
#> SRR1201808 2 0.0707 0.7666 0.000 0.980 0.020 0.000
#> SRR1201803 2 0.0817 0.7663 0.000 0.976 0.024 0.000
#> SRR1201804 2 0.0817 0.7663 0.000 0.976 0.024 0.000
#> SRR1201805 2 0.0817 0.7663 0.000 0.976 0.024 0.000
#> SRR1201806 2 0.0707 0.7640 0.000 0.980 0.020 0.000
#> SRR1201801 2 0.0707 0.7661 0.000 0.980 0.020 0.000
#> SRR1201802 2 0.0707 0.7666 0.000 0.980 0.020 0.000
#> SRR1201800 2 0.4035 0.6610 0.000 0.804 0.176 0.020
#> SRR1201814 2 0.1722 0.7685 0.000 0.944 0.048 0.008
#> SRR1201816 2 0.1584 0.7677 0.000 0.952 0.036 0.012
#> SRR1201815 2 0.1305 0.7682 0.000 0.960 0.036 0.004
#> SRR1201819 2 0.1356 0.7679 0.000 0.960 0.032 0.008
#> SRR1201820 2 0.1706 0.7676 0.000 0.948 0.036 0.016
#> SRR1201813 2 0.4121 0.6546 0.000 0.796 0.184 0.020
#> SRR1201817 2 0.2111 0.7661 0.000 0.932 0.044 0.024
#> SRR1201818 2 0.1767 0.7677 0.000 0.944 0.044 0.012
#> SRR1201825 3 0.3856 0.6291 0.000 0.136 0.832 0.032
#> SRR1201827 4 0.3497 0.7249 0.000 0.104 0.036 0.860
#> SRR1201828 4 0.3080 0.7177 0.000 0.096 0.024 0.880
#> SRR1201826 3 0.5021 0.5089 0.000 0.036 0.724 0.240
#> SRR1201829 4 0.3616 0.7244 0.000 0.112 0.036 0.852
#> SRR1201830 4 0.3638 0.7214 0.000 0.120 0.032 0.848
#> SRR1201831 4 0.3205 0.7220 0.000 0.104 0.024 0.872
#> SRR1201832 4 0.3497 0.7249 0.000 0.104 0.036 0.860
#> SRR1201833 4 0.3523 0.7242 0.000 0.112 0.032 0.856
#> SRR1201865 2 0.5596 0.5841 0.000 0.632 0.332 0.036
#> SRR1201866 2 0.5587 0.5423 0.000 0.600 0.372 0.028
#> SRR1201867 2 0.5496 0.5438 0.000 0.604 0.372 0.024
#> SRR1201861 2 0.5632 0.5742 0.000 0.624 0.340 0.036
#> SRR1201862 2 0.5632 0.5764 0.000 0.624 0.340 0.036
#> SRR1201863 2 0.5577 0.5852 0.000 0.636 0.328 0.036
#> SRR1201859 3 0.5062 0.5068 0.000 0.300 0.680 0.020
#> SRR1201864 2 0.5713 0.5744 0.000 0.620 0.340 0.040
#> SRR1201860 2 0.5730 0.5587 0.000 0.616 0.344 0.040
#> SRR1201873 3 0.4789 0.5354 0.000 0.172 0.772 0.056
#> SRR1201871 3 0.3498 0.6184 0.000 0.160 0.832 0.008
#> SRR1201872 3 0.5091 0.5151 0.000 0.180 0.752 0.068
#> SRR1201980 2 0.5938 0.6616 0.000 0.696 0.168 0.136
#> SRR1201979 3 0.4706 0.5556 0.000 0.248 0.732 0.020
#> SRR1201982 2 0.5985 0.6530 0.000 0.692 0.168 0.140
#> SRR1201981 3 0.5026 0.3778 0.000 0.312 0.672 0.016
#> SRR1201998 2 0.5204 0.7006 0.000 0.752 0.160 0.088
#> SRR1201996 2 0.4964 0.5596 0.000 0.616 0.380 0.004
#> SRR1201997 2 0.5204 0.6969 0.000 0.752 0.160 0.088
#> SRR1202005 2 0.4134 0.7085 0.000 0.740 0.260 0.000
#> SRR1202006 2 0.4829 0.7133 0.000 0.776 0.156 0.068
#> SRR1202088 2 0.3959 0.7618 0.000 0.840 0.092 0.068
#> SRR1202087 3 0.5062 0.5041 0.000 0.300 0.680 0.020
#> SRR1202093 2 0.2596 0.7522 0.000 0.908 0.024 0.068
#> SRR1202092 2 0.5271 0.4377 0.000 0.640 0.340 0.020
#> SRR1202288 2 0.4642 0.5968 0.000 0.740 0.240 0.020
#> SRR1202289 2 0.1820 0.7503 0.000 0.944 0.036 0.020
#> SRR1202299 2 0.1022 0.7545 0.000 0.968 0.032 0.000
#> SRR1202298 2 0.4079 0.6581 0.000 0.800 0.180 0.020
#> SRR1202303 4 0.2363 0.6243 0.000 0.024 0.056 0.920
#> SRR1202372 2 0.0927 0.7665 0.000 0.976 0.016 0.008
#> SRR1202371 2 0.4675 0.5907 0.000 0.736 0.244 0.020
#> SRR1202563 3 0.5057 0.4733 0.000 0.340 0.648 0.012
#> SRR1202565 2 0.4804 0.7194 0.000 0.780 0.148 0.072
#> SRR1202564 2 0.4852 0.7181 0.000 0.776 0.152 0.072
#> SRR1202649 3 0.5291 0.4910 0.000 0.324 0.652 0.024
#> SRR1202650 2 0.5339 0.4054 0.000 0.624 0.356 0.020
#> SRR1202651 2 0.4541 0.7248 0.000 0.796 0.144 0.060
#> SRR1202843 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1202845 2 0.5183 0.4850 0.000 0.584 0.408 0.008
#> SRR1202847 2 0.4872 0.7149 0.000 0.776 0.148 0.076
#> SRR1202846 2 0.4938 0.7127 0.000 0.772 0.148 0.080
#> SRR1202945 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203009 1 0.3411 0.8569 0.876 0.008 0.084 0.032
#> SRR1203008 1 0.3285 0.8766 0.892 0.024 0.052 0.032
#> SRR1203010 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203132 2 0.6433 0.5994 0.000 0.648 0.164 0.188
#> SRR1203131 3 0.4418 0.6148 0.000 0.184 0.784 0.032
#> SRR1203133 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203827 3 0.8117 0.4817 0.112 0.184 0.584 0.120
#> SRR1203828 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203842 1 0.7134 0.0967 0.532 0.312 0.156 0.000
#> SRR1203843 1 0.0000 0.9882 1.000 0.000 0.000 0.000
#> SRR1203845 2 0.5011 0.7057 0.000 0.764 0.160 0.076
#> SRR1203844 2 0.3266 0.7186 0.000 0.832 0.168 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.1205 0.8301 0.000 0.956 0.040 0.000 0.004
#> SRR1201590 2 0.2438 0.7866 0.000 0.900 0.040 0.000 0.060
#> SRR1201593 2 0.2011 0.8252 0.000 0.908 0.088 0.000 0.004
#> SRR1201592 2 0.2426 0.7926 0.000 0.900 0.064 0.000 0.036
#> SRR1201617 2 0.1608 0.8296 0.000 0.928 0.072 0.000 0.000
#> SRR1201616 2 0.1818 0.8036 0.000 0.932 0.044 0.000 0.024
#> SRR1201619 2 0.5136 0.4780 0.000 0.624 0.332 0.028 0.016
#> SRR1201618 2 0.5921 0.2829 0.000 0.568 0.136 0.000 0.296
#> SRR1201620 2 0.2124 0.7947 0.000 0.916 0.056 0.000 0.028
#> SRR1201621 2 0.3088 0.7798 0.000 0.828 0.164 0.004 0.004
#> SRR1201623 3 0.4713 0.5670 0.000 0.088 0.740 0.004 0.168
#> SRR1201622 5 0.3817 0.6430 0.000 0.004 0.252 0.004 0.740
#> SRR1201624 4 0.4655 0.5238 0.004 0.000 0.012 0.600 0.384
#> SRR1201625 4 0.2535 0.7465 0.000 0.000 0.032 0.892 0.076
#> SRR1201626 4 0.1864 0.7342 0.004 0.000 0.004 0.924 0.068
#> SRR1201627 4 0.1997 0.7568 0.000 0.000 0.036 0.924 0.040
#> SRR1201628 5 0.5432 0.5052 0.000 0.064 0.392 0.000 0.544
#> SRR1201629 3 0.1943 0.6357 0.000 0.056 0.924 0.000 0.020
#> SRR1201630 3 0.6515 0.1484 0.000 0.328 0.464 0.000 0.208
#> SRR1201631 3 0.3934 0.5464 0.000 0.276 0.716 0.000 0.008
#> SRR1201641 3 0.3519 0.5908 0.000 0.216 0.776 0.000 0.008
#> SRR1201640 3 0.6506 0.1852 0.000 0.324 0.468 0.000 0.208
#> SRR1201643 3 0.6497 -0.2391 0.000 0.188 0.420 0.000 0.392
#> SRR1201644 3 0.3276 0.6224 0.000 0.132 0.836 0.000 0.032
#> SRR1201661 3 0.6651 0.0776 0.000 0.300 0.444 0.000 0.256
#> SRR1201662 3 0.3554 0.5927 0.000 0.216 0.776 0.004 0.004
#> SRR1201663 5 0.3209 0.6354 0.000 0.000 0.180 0.008 0.812
#> SRR1201664 5 0.4651 0.4989 0.000 0.000 0.372 0.020 0.608
#> SRR1201665 2 0.4083 0.6168 0.000 0.744 0.028 0.000 0.228
#> SRR1201666 2 0.1768 0.8310 0.000 0.924 0.072 0.000 0.004
#> SRR1201667 2 0.1892 0.8293 0.000 0.916 0.080 0.000 0.004
#> SRR1201668 5 0.2835 0.4764 0.000 0.112 0.016 0.004 0.868
#> SRR1201670 5 0.4077 0.4019 0.000 0.012 0.124 0.060 0.804
#> SRR1201669 5 0.3849 0.4208 0.000 0.012 0.116 0.052 0.820
#> SRR1201673 3 0.6552 0.2945 0.000 0.272 0.564 0.132 0.032
#> SRR1201672 3 0.6531 0.2971 0.000 0.284 0.560 0.124 0.032
#> SRR1201671 5 0.6599 0.3484 0.000 0.264 0.272 0.000 0.464
#> SRR1201677 3 0.6514 0.2980 0.000 0.280 0.564 0.124 0.032
#> SRR1201676 3 0.6552 0.2945 0.000 0.272 0.564 0.132 0.032
#> SRR1201675 3 0.6534 0.2961 0.000 0.276 0.564 0.128 0.032
#> SRR1201674 3 0.6570 0.2940 0.000 0.276 0.560 0.132 0.032
#> SRR1201678 3 0.6488 0.2986 0.000 0.292 0.560 0.116 0.032
#> SRR1201682 2 0.5668 0.2296 0.000 0.516 0.424 0.040 0.020
#> SRR1201683 2 0.5579 0.2809 0.000 0.536 0.408 0.036 0.020
#> SRR1201680 2 0.5572 0.2915 0.000 0.540 0.404 0.036 0.020
#> SRR1201681 2 0.5657 0.2511 0.000 0.524 0.416 0.040 0.020
#> SRR1201679 2 0.3239 0.7458 0.000 0.852 0.080 0.000 0.068
#> SRR1201686 5 0.2903 0.5197 0.000 0.000 0.080 0.048 0.872
#> SRR1201687 5 0.2708 0.5236 0.000 0.000 0.072 0.044 0.884
#> SRR1201688 5 0.2782 0.5209 0.000 0.000 0.072 0.048 0.880
#> SRR1201689 5 0.2708 0.5252 0.000 0.000 0.072 0.044 0.884
#> SRR1201685 5 0.1804 0.5085 0.000 0.012 0.024 0.024 0.940
#> SRR1201692 3 0.1682 0.6352 0.000 0.044 0.940 0.004 0.012
#> SRR1201691 3 0.1682 0.6352 0.000 0.044 0.940 0.004 0.012
#> SRR1201690 5 0.5151 0.5170 0.000 0.044 0.396 0.000 0.560
#> SRR1201696 3 0.1757 0.6352 0.000 0.048 0.936 0.004 0.012
#> SRR1201695 3 0.1682 0.6352 0.000 0.044 0.940 0.004 0.012
#> SRR1201694 3 0.1862 0.6351 0.000 0.048 0.932 0.004 0.016
#> SRR1201693 3 0.1960 0.6345 0.000 0.048 0.928 0.004 0.020
#> SRR1201697 3 0.1695 0.6346 0.000 0.044 0.940 0.008 0.008
#> SRR1201698 3 0.1597 0.6351 0.000 0.048 0.940 0.000 0.012
#> SRR1201700 5 0.4425 0.5409 0.000 0.008 0.392 0.000 0.600
#> SRR1201708 3 0.3146 0.6042 0.000 0.028 0.876 0.056 0.040
#> SRR1201707 3 0.3135 0.6049 0.000 0.028 0.876 0.060 0.036
#> SRR1201706 3 0.2970 0.6067 0.000 0.028 0.884 0.060 0.028
#> SRR1201702 3 0.3327 0.6008 0.000 0.028 0.864 0.072 0.036
#> SRR1201705 3 0.3354 0.6039 0.000 0.028 0.864 0.064 0.044
#> SRR1201701 3 0.3388 0.6000 0.000 0.028 0.860 0.076 0.036
#> SRR1201704 3 0.3439 0.5963 0.000 0.024 0.856 0.080 0.040
#> SRR1201703 3 0.3379 0.5953 0.000 0.024 0.860 0.076 0.040
#> SRR1201716 3 0.4743 0.3901 0.000 0.004 0.700 0.048 0.248
#> SRR1201715 3 0.4673 0.4269 0.000 0.004 0.716 0.052 0.228
#> SRR1201717 3 0.4701 0.3894 0.000 0.004 0.700 0.044 0.252
#> SRR1201712 3 0.4532 0.4065 0.000 0.004 0.712 0.036 0.248
#> SRR1201709 5 0.4162 0.6118 0.000 0.004 0.312 0.004 0.680
#> SRR1201711 3 0.4549 0.4443 0.000 0.004 0.728 0.048 0.220
#> SRR1201714 3 0.4509 0.4392 0.000 0.004 0.728 0.044 0.224
#> SRR1201713 3 0.4457 0.4594 0.000 0.004 0.740 0.048 0.208
#> SRR1201710 3 0.4578 0.4164 0.000 0.004 0.712 0.040 0.244
#> SRR1201719 3 0.3234 0.6254 0.000 0.144 0.836 0.008 0.012
#> SRR1201718 3 0.6476 0.1944 0.000 0.260 0.496 0.000 0.244
#> SRR1201721 3 0.1869 0.6282 0.000 0.036 0.936 0.012 0.016
#> SRR1201720 5 0.5086 0.5190 0.000 0.040 0.396 0.000 0.564
#> SRR1201723 5 0.5752 0.3353 0.000 0.000 0.384 0.092 0.524
#> SRR1201722 5 0.2833 0.6152 0.000 0.004 0.140 0.004 0.852
#> SRR1201725 3 0.2857 0.6326 0.000 0.112 0.868 0.012 0.008
#> SRR1201724 3 0.6624 0.0712 0.000 0.264 0.456 0.000 0.280
#> SRR1201726 5 0.4630 0.5312 0.000 0.016 0.396 0.000 0.588
#> SRR1201727 3 0.3752 0.5596 0.000 0.008 0.828 0.092 0.072
#> SRR1201731 3 0.2494 0.6159 0.000 0.032 0.904 0.056 0.008
#> SRR1201730 5 0.5962 0.3606 0.000 0.108 0.424 0.000 0.468
#> SRR1201734 2 0.1608 0.8295 0.000 0.928 0.072 0.000 0.000
#> SRR1201733 2 0.1582 0.8062 0.000 0.944 0.028 0.000 0.028
#> SRR1201736 2 0.4378 0.5608 0.000 0.716 0.036 0.000 0.248
#> SRR1201737 2 0.3196 0.7555 0.000 0.804 0.192 0.000 0.004
#> SRR1201739 2 0.2286 0.8182 0.000 0.888 0.108 0.000 0.004
#> SRR1201738 2 0.1485 0.8090 0.000 0.948 0.020 0.000 0.032
#> SRR1201742 2 0.5740 0.3299 0.000 0.600 0.128 0.000 0.272
#> SRR1201743 2 0.5346 0.3147 0.000 0.552 0.404 0.028 0.016
#> SRR1201745 2 0.2773 0.7932 0.000 0.836 0.164 0.000 0.000
#> SRR1201744 2 0.2685 0.7697 0.000 0.880 0.092 0.000 0.028
#> SRR1201749 2 0.3535 0.7282 0.000 0.832 0.080 0.000 0.088
#> SRR1201750 2 0.3797 0.6984 0.000 0.756 0.232 0.004 0.008
#> SRR1201752 3 0.2906 0.6357 0.000 0.080 0.880 0.028 0.012
#> SRR1201751 5 0.4808 0.5790 0.000 0.032 0.348 0.000 0.620
#> SRR1201754 3 0.4954 0.3748 0.000 0.380 0.592 0.012 0.016
#> SRR1201753 3 0.6477 0.1785 0.000 0.340 0.464 0.000 0.196
#> SRR1201758 5 0.2236 0.4622 0.000 0.000 0.024 0.068 0.908
#> SRR1201759 5 0.2922 0.5182 0.000 0.000 0.072 0.056 0.872
#> SRR1201760 5 0.5264 0.5187 0.000 0.052 0.392 0.000 0.556
#> SRR1201761 3 0.2588 0.6201 0.000 0.048 0.892 0.000 0.060
#> SRR1201763 4 0.2077 0.7570 0.000 0.000 0.040 0.920 0.040
#> SRR1201762 4 0.3706 0.6851 0.012 0.000 0.012 0.796 0.180
#> SRR1201764 4 0.6150 0.3432 0.008 0.000 0.280 0.572 0.140
#> SRR1201766 2 0.1568 0.8072 0.000 0.944 0.020 0.000 0.036
#> SRR1201768 2 0.0955 0.8283 0.000 0.968 0.028 0.000 0.004
#> SRR1201769 2 0.0955 0.8283 0.000 0.968 0.028 0.000 0.004
#> SRR1201767 2 0.0865 0.8273 0.000 0.972 0.024 0.000 0.004
#> SRR1201770 2 0.1124 0.8299 0.000 0.960 0.036 0.000 0.004
#> SRR1201771 2 0.0955 0.8283 0.000 0.968 0.028 0.000 0.004
#> SRR1201772 2 0.0955 0.8283 0.000 0.968 0.028 0.000 0.004
#> SRR1201773 2 0.0880 0.8296 0.000 0.968 0.032 0.000 0.000
#> SRR1201774 2 0.0865 0.8273 0.000 0.972 0.024 0.000 0.004
#> SRR1201786 2 0.0566 0.8235 0.000 0.984 0.012 0.000 0.004
#> SRR1201784 2 0.0671 0.8249 0.000 0.980 0.016 0.000 0.004
#> SRR1201785 2 0.0566 0.8235 0.000 0.984 0.012 0.000 0.004
#> SRR1201778 2 0.2520 0.7779 0.000 0.896 0.048 0.000 0.056
#> SRR1201779 2 0.0771 0.8261 0.000 0.976 0.020 0.000 0.004
#> SRR1201781 2 0.0566 0.8235 0.000 0.984 0.012 0.000 0.004
#> SRR1201780 2 0.0566 0.8235 0.000 0.984 0.012 0.000 0.004
#> SRR1201783 2 0.0566 0.8235 0.000 0.984 0.012 0.000 0.004
#> SRR1201782 2 0.0566 0.8235 0.000 0.984 0.012 0.000 0.004
#> SRR1201798 2 0.1831 0.8287 0.000 0.920 0.076 0.000 0.004
#> SRR1201797 2 0.1638 0.8304 0.000 0.932 0.064 0.000 0.004
#> SRR1201796 2 0.1638 0.8304 0.000 0.932 0.064 0.000 0.004
#> SRR1201795 2 0.1638 0.8304 0.000 0.932 0.064 0.000 0.004
#> SRR1201799 2 0.1892 0.8276 0.000 0.916 0.080 0.000 0.004
#> SRR1201794 2 0.1197 0.8308 0.000 0.952 0.048 0.000 0.000
#> SRR1201793 2 0.2011 0.8253 0.000 0.908 0.088 0.000 0.004
#> SRR1201792 2 0.1768 0.8294 0.000 0.924 0.072 0.000 0.004
#> SRR1201791 2 0.1211 0.8101 0.000 0.960 0.016 0.000 0.024
#> SRR1201807 2 0.2890 0.7852 0.000 0.836 0.160 0.000 0.004
#> SRR1201808 2 0.2890 0.7851 0.000 0.836 0.160 0.000 0.004
#> SRR1201803 2 0.3128 0.7760 0.000 0.824 0.168 0.004 0.004
#> SRR1201804 2 0.2806 0.7915 0.000 0.844 0.152 0.000 0.004
#> SRR1201805 2 0.3088 0.7798 0.000 0.828 0.164 0.004 0.004
#> SRR1201806 2 0.2648 0.7931 0.000 0.848 0.152 0.000 0.000
#> SRR1201801 2 0.2561 0.7982 0.000 0.856 0.144 0.000 0.000
#> SRR1201802 2 0.2806 0.7921 0.000 0.844 0.152 0.004 0.000
#> SRR1201800 2 0.1741 0.8043 0.000 0.936 0.040 0.000 0.024
#> SRR1201814 2 0.3475 0.7593 0.000 0.804 0.180 0.012 0.004
#> SRR1201816 2 0.3475 0.7593 0.000 0.804 0.180 0.012 0.004
#> SRR1201815 2 0.3365 0.7618 0.000 0.808 0.180 0.008 0.004
#> SRR1201819 2 0.3437 0.7637 0.000 0.808 0.176 0.012 0.004
#> SRR1201820 2 0.3475 0.7593 0.000 0.804 0.180 0.012 0.004
#> SRR1201813 2 0.1914 0.8078 0.000 0.924 0.060 0.000 0.016
#> SRR1201817 2 0.3511 0.7552 0.000 0.800 0.184 0.012 0.004
#> SRR1201818 2 0.3548 0.7499 0.000 0.796 0.188 0.012 0.004
#> SRR1201825 5 0.3835 0.6459 0.000 0.012 0.244 0.000 0.744
#> SRR1201827 4 0.3947 0.7543 0.000 0.008 0.236 0.748 0.008
#> SRR1201828 4 0.3935 0.7597 0.000 0.012 0.220 0.760 0.008
#> SRR1201826 4 0.6929 0.1656 0.000 0.028 0.272 0.508 0.192
#> SRR1201829 4 0.4289 0.7151 0.000 0.012 0.272 0.708 0.008
#> SRR1201830 4 0.3835 0.7419 0.000 0.012 0.244 0.744 0.000
#> SRR1201831 4 0.3705 0.7649 0.000 0.012 0.192 0.788 0.008
#> SRR1201832 4 0.3996 0.7544 0.000 0.012 0.228 0.752 0.008
#> SRR1201833 4 0.3728 0.7470 0.000 0.008 0.244 0.748 0.000
#> SRR1201865 3 0.5883 0.4193 0.000 0.136 0.604 0.004 0.256
#> SRR1201866 3 0.6030 0.1841 0.000 0.112 0.532 0.004 0.352
#> SRR1201867 3 0.6134 0.2570 0.000 0.132 0.540 0.004 0.324
#> SRR1201861 3 0.5927 0.3881 0.000 0.132 0.592 0.004 0.272
#> SRR1201862 3 0.6056 0.3618 0.000 0.124 0.576 0.008 0.292
#> SRR1201863 3 0.6119 0.4302 0.000 0.148 0.600 0.012 0.240
#> SRR1201859 5 0.5394 0.6033 0.000 0.132 0.208 0.000 0.660
#> SRR1201864 3 0.6215 0.3744 0.000 0.140 0.576 0.012 0.272
#> SRR1201860 3 0.6043 0.3087 0.000 0.116 0.568 0.008 0.308
#> SRR1201873 3 0.4210 0.0010 0.000 0.000 0.588 0.000 0.412
#> SRR1201871 5 0.3890 0.6425 0.000 0.012 0.252 0.000 0.736
#> SRR1201872 3 0.4166 0.1865 0.000 0.000 0.648 0.004 0.348
#> SRR1201980 3 0.1522 0.6337 0.000 0.044 0.944 0.000 0.012
#> SRR1201979 5 0.5803 0.4847 0.000 0.100 0.368 0.000 0.532
#> SRR1201982 3 0.1704 0.6377 0.000 0.068 0.928 0.000 0.004
#> SRR1201981 5 0.6300 0.3021 0.000 0.152 0.420 0.000 0.428
#> SRR1201998 3 0.2338 0.6343 0.000 0.112 0.884 0.000 0.004
#> SRR1201996 3 0.6687 0.0324 0.000 0.304 0.432 0.000 0.264
#> SRR1201997 3 0.2806 0.6240 0.000 0.152 0.844 0.000 0.004
#> SRR1202005 3 0.5707 0.3667 0.000 0.364 0.544 0.000 0.092
#> SRR1202006 3 0.4086 0.5448 0.000 0.284 0.704 0.000 0.012
#> SRR1202088 2 0.5077 0.2688 0.000 0.536 0.428 0.000 0.036
#> SRR1202087 5 0.4455 0.2434 0.000 0.404 0.008 0.000 0.588
#> SRR1202093 2 0.3171 0.7668 0.000 0.816 0.176 0.000 0.008
#> SRR1202092 2 0.3266 0.6756 0.000 0.796 0.004 0.000 0.200
#> SRR1202288 2 0.2304 0.7885 0.000 0.908 0.044 0.000 0.048
#> SRR1202289 2 0.1168 0.8291 0.000 0.960 0.032 0.000 0.008
#> SRR1202299 2 0.2127 0.8174 0.000 0.892 0.108 0.000 0.000
#> SRR1202298 2 0.1493 0.8089 0.000 0.948 0.028 0.000 0.024
#> SRR1202303 4 0.2074 0.7565 0.000 0.000 0.036 0.920 0.044
#> SRR1202372 2 0.2848 0.7883 0.000 0.840 0.156 0.000 0.004
#> SRR1202371 2 0.2344 0.7875 0.000 0.904 0.064 0.000 0.032
#> SRR1202563 5 0.6756 0.3748 0.000 0.236 0.316 0.004 0.444
#> SRR1202565 3 0.4342 0.5746 0.000 0.248 0.724 0.012 0.016
#> SRR1202564 3 0.4262 0.5730 0.000 0.252 0.724 0.008 0.016
#> SRR1202649 5 0.6555 0.4636 0.000 0.212 0.284 0.004 0.500
#> SRR1202650 2 0.6775 -0.3074 0.000 0.376 0.348 0.000 0.276
#> SRR1202651 3 0.4931 0.4500 0.000 0.344 0.624 0.016 0.016
#> SRR1202843 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1202845 3 0.6684 0.0360 0.000 0.288 0.436 0.000 0.276
#> SRR1202847 3 0.3809 0.5627 0.000 0.256 0.736 0.000 0.008
#> SRR1202846 3 0.3768 0.5829 0.000 0.228 0.760 0.004 0.008
#> SRR1202945 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.4272 0.7980 0.828 0.040 0.028 0.068 0.036
#> SRR1203008 1 0.3353 0.8508 0.876 0.048 0.020 0.024 0.032
#> SRR1203010 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.1800 0.6331 0.000 0.048 0.932 0.000 0.020
#> SRR1203131 5 0.5499 0.4904 0.000 0.068 0.400 0.000 0.532
#> SRR1203133 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203827 5 0.8209 0.0253 0.104 0.336 0.036 0.104 0.420
#> SRR1203828 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203842 1 0.7329 -0.0529 0.432 0.388 0.084 0.004 0.092
#> SRR1203843 1 0.0000 0.9864 1.000 0.000 0.000 0.000 0.000
#> SRR1203845 3 0.4665 0.5279 0.000 0.304 0.668 0.012 0.016
#> SRR1203844 2 0.4905 -0.1158 0.000 0.500 0.476 0.000 0.024
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 2 0.1010 0.88321 0.000 0.960 0.000 0.000 0.004 0.036
#> SRR1201590 2 0.2432 0.84995 0.000 0.892 0.072 0.000 0.020 0.016
#> SRR1201593 2 0.1462 0.88091 0.000 0.936 0.008 0.000 0.000 0.056
#> SRR1201592 2 0.3438 0.75428 0.000 0.764 0.220 0.000 0.008 0.008
#> SRR1201617 2 0.1398 0.88177 0.000 0.940 0.008 0.000 0.000 0.052
#> SRR1201616 2 0.2512 0.83738 0.000 0.868 0.116 0.000 0.008 0.008
#> SRR1201619 2 0.4060 0.50816 0.000 0.644 0.008 0.000 0.008 0.340
#> SRR1201618 2 0.5716 0.38058 0.000 0.560 0.232 0.000 0.200 0.008
#> SRR1201620 2 0.2611 0.83034 0.000 0.864 0.116 0.000 0.012 0.008
#> SRR1201621 2 0.3013 0.84483 0.000 0.844 0.068 0.000 0.000 0.088
#> SRR1201623 6 0.6423 0.32609 0.000 0.032 0.348 0.000 0.184 0.436
#> SRR1201622 5 0.4184 0.15876 0.000 0.000 0.484 0.000 0.504 0.012
#> SRR1201624 4 0.1649 0.88875 0.000 0.000 0.000 0.932 0.036 0.032
#> SRR1201625 4 0.0291 0.90942 0.000 0.000 0.000 0.992 0.004 0.004
#> SRR1201626 4 0.0692 0.90716 0.000 0.000 0.000 0.976 0.004 0.020
#> SRR1201627 4 0.0405 0.90875 0.000 0.000 0.000 0.988 0.004 0.008
#> SRR1201628 3 0.2255 0.61578 0.000 0.016 0.892 0.000 0.088 0.004
#> SRR1201629 3 0.4571 0.41217 0.000 0.024 0.664 0.000 0.028 0.284
#> SRR1201630 3 0.1901 0.64195 0.000 0.076 0.912 0.000 0.004 0.008
#> SRR1201631 3 0.3775 0.60981 0.000 0.092 0.780 0.000 0.000 0.128
#> SRR1201641 3 0.3834 0.60405 0.000 0.084 0.772 0.000 0.000 0.144
#> SRR1201640 3 0.1701 0.64283 0.000 0.072 0.920 0.000 0.008 0.000
#> SRR1201643 3 0.1480 0.64136 0.000 0.040 0.940 0.000 0.020 0.000
#> SRR1201644 3 0.3090 0.63719 0.000 0.056 0.848 0.000 0.008 0.088
#> SRR1201661 3 0.1788 0.64258 0.000 0.076 0.916 0.000 0.004 0.004
#> SRR1201662 3 0.3375 0.62709 0.000 0.088 0.816 0.000 0.000 0.096
#> SRR1201663 5 0.3778 0.52020 0.000 0.000 0.288 0.000 0.696 0.016
#> SRR1201664 5 0.5650 0.21786 0.000 0.000 0.344 0.004 0.508 0.144
#> SRR1201665 2 0.4387 0.73026 0.000 0.748 0.072 0.000 0.156 0.024
#> SRR1201666 2 0.1719 0.87878 0.000 0.924 0.000 0.000 0.016 0.060
#> SRR1201667 2 0.1719 0.87754 0.000 0.924 0.000 0.000 0.016 0.060
#> SRR1201668 5 0.2784 0.51208 0.000 0.064 0.040 0.000 0.876 0.020
#> SRR1201670 5 0.3532 0.51948 0.000 0.024 0.016 0.004 0.808 0.148
#> SRR1201669 5 0.3210 0.52003 0.000 0.020 0.016 0.004 0.836 0.124
#> SRR1201673 6 0.3161 0.35311 0.000 0.156 0.012 0.008 0.004 0.820
#> SRR1201672 6 0.3198 0.35176 0.000 0.160 0.012 0.008 0.004 0.816
#> SRR1201671 3 0.5642 0.22948 0.000 0.112 0.576 0.000 0.288 0.024
#> SRR1201677 6 0.3198 0.35294 0.000 0.160 0.012 0.008 0.004 0.816
#> SRR1201676 6 0.3085 0.35111 0.000 0.148 0.012 0.008 0.004 0.828
#> SRR1201675 6 0.3198 0.35294 0.000 0.160 0.012 0.008 0.004 0.816
#> SRR1201674 6 0.3161 0.35311 0.000 0.156 0.012 0.008 0.004 0.820
#> SRR1201678 6 0.3234 0.35262 0.000 0.164 0.012 0.008 0.004 0.812
#> SRR1201682 6 0.4234 0.03034 0.000 0.440 0.016 0.000 0.000 0.544
#> SRR1201683 6 0.4238 0.01810 0.000 0.444 0.016 0.000 0.000 0.540
#> SRR1201680 6 0.4253 -0.03786 0.000 0.460 0.016 0.000 0.000 0.524
#> SRR1201681 6 0.4242 0.00561 0.000 0.448 0.016 0.000 0.000 0.536
#> SRR1201679 2 0.3246 0.78088 0.000 0.812 0.160 0.000 0.016 0.012
#> SRR1201686 5 0.2278 0.58357 0.000 0.000 0.052 0.004 0.900 0.044
#> SRR1201687 5 0.2278 0.58357 0.000 0.000 0.052 0.004 0.900 0.044
#> SRR1201688 5 0.2278 0.58357 0.000 0.000 0.052 0.004 0.900 0.044
#> SRR1201689 5 0.2209 0.58245 0.000 0.000 0.052 0.004 0.904 0.040
#> SRR1201685 5 0.2057 0.54231 0.000 0.016 0.044 0.004 0.920 0.016
#> SRR1201692 3 0.4770 0.11028 0.000 0.016 0.532 0.000 0.024 0.428
#> SRR1201691 3 0.4699 0.13527 0.000 0.016 0.536 0.000 0.020 0.428
#> SRR1201690 3 0.2512 0.59452 0.000 0.008 0.868 0.000 0.116 0.008
#> SRR1201696 3 0.4780 0.20862 0.000 0.016 0.564 0.000 0.028 0.392
#> SRR1201695 3 0.4842 0.07060 0.000 0.016 0.524 0.000 0.028 0.432
#> SRR1201694 3 0.4702 0.21887 0.000 0.016 0.572 0.000 0.024 0.388
#> SRR1201693 3 0.4629 0.28646 0.000 0.012 0.596 0.000 0.028 0.364
#> SRR1201697 3 0.4719 0.06646 0.000 0.020 0.516 0.000 0.016 0.448
#> SRR1201698 3 0.4620 0.25367 0.000 0.016 0.580 0.000 0.020 0.384
#> SRR1201700 3 0.2558 0.55310 0.000 0.000 0.840 0.000 0.156 0.004
#> SRR1201708 6 0.5548 0.21828 0.000 0.016 0.436 0.004 0.072 0.472
#> SRR1201707 6 0.5465 0.18568 0.000 0.016 0.448 0.004 0.064 0.468
#> SRR1201706 6 0.5394 0.27970 0.000 0.016 0.412 0.004 0.060 0.508
#> SRR1201702 6 0.5436 0.28886 0.000 0.016 0.408 0.004 0.064 0.508
#> SRR1201705 6 0.5521 0.29371 0.000 0.016 0.404 0.004 0.072 0.504
#> SRR1201701 6 0.5413 0.31676 0.000 0.016 0.392 0.004 0.064 0.524
#> SRR1201704 6 0.5407 0.32170 0.000 0.016 0.388 0.004 0.064 0.528
#> SRR1201703 6 0.5553 0.31131 0.000 0.016 0.396 0.004 0.076 0.508
#> SRR1201716 6 0.6266 0.33988 0.000 0.004 0.352 0.004 0.244 0.396
#> SRR1201715 6 0.6243 0.34322 0.000 0.004 0.352 0.004 0.236 0.404
#> SRR1201717 6 0.6266 0.33988 0.000 0.004 0.352 0.004 0.244 0.396
#> SRR1201712 6 0.6260 0.33054 0.000 0.004 0.360 0.004 0.240 0.392
#> SRR1201709 3 0.4199 0.17874 0.000 0.000 0.600 0.000 0.380 0.020
#> SRR1201711 6 0.6252 0.34662 0.000 0.004 0.348 0.004 0.240 0.404
#> SRR1201714 6 0.6252 0.34527 0.000 0.004 0.348 0.004 0.240 0.404
#> SRR1201713 6 0.6248 0.34903 0.000 0.004 0.344 0.004 0.240 0.408
#> SRR1201710 6 0.6270 0.32662 0.000 0.004 0.360 0.004 0.244 0.388
#> SRR1201719 3 0.3663 0.61263 0.000 0.068 0.784 0.000 0.000 0.148
#> SRR1201718 3 0.1728 0.64534 0.000 0.064 0.924 0.000 0.004 0.008
#> SRR1201721 3 0.4660 0.38276 0.000 0.024 0.644 0.000 0.028 0.304
#> SRR1201720 3 0.1700 0.61569 0.000 0.004 0.916 0.000 0.080 0.000
#> SRR1201723 5 0.6188 0.20305 0.000 0.000 0.212 0.016 0.476 0.296
#> SRR1201722 5 0.3711 0.54619 0.000 0.000 0.260 0.000 0.720 0.020
#> SRR1201725 3 0.3807 0.58174 0.000 0.052 0.756 0.000 0.000 0.192
#> SRR1201724 3 0.1588 0.64267 0.000 0.072 0.924 0.000 0.004 0.000
#> SRR1201726 3 0.1700 0.61404 0.000 0.004 0.916 0.000 0.080 0.000
#> SRR1201727 3 0.5707 0.01848 0.000 0.004 0.520 0.008 0.120 0.348
#> SRR1201731 3 0.4391 0.40297 0.000 0.028 0.644 0.000 0.008 0.320
#> SRR1201730 3 0.1492 0.63687 0.000 0.024 0.940 0.000 0.036 0.000
#> SRR1201734 2 0.1542 0.88318 0.000 0.936 0.008 0.000 0.004 0.052
#> SRR1201733 2 0.2257 0.85827 0.000 0.904 0.060 0.000 0.020 0.016
#> SRR1201736 2 0.4770 0.59493 0.000 0.660 0.056 0.000 0.268 0.016
#> SRR1201737 2 0.2358 0.86114 0.000 0.876 0.000 0.000 0.016 0.108
#> SRR1201739 2 0.1806 0.87349 0.000 0.908 0.000 0.000 0.004 0.088
#> SRR1201738 2 0.1932 0.86359 0.000 0.924 0.040 0.000 0.020 0.016
#> SRR1201742 2 0.5973 0.29231 0.000 0.532 0.256 0.000 0.196 0.016
#> SRR1201743 2 0.4227 0.13036 0.000 0.496 0.008 0.000 0.004 0.492
#> SRR1201745 2 0.2856 0.85334 0.000 0.856 0.076 0.000 0.000 0.068
#> SRR1201744 2 0.3300 0.77979 0.000 0.812 0.156 0.000 0.016 0.016
#> SRR1201749 2 0.3448 0.79624 0.000 0.816 0.108 0.000 0.072 0.004
#> SRR1201750 2 0.3152 0.77433 0.000 0.792 0.004 0.000 0.008 0.196
#> SRR1201752 6 0.4885 0.23164 0.000 0.040 0.392 0.000 0.012 0.556
#> SRR1201751 3 0.3616 0.45732 0.000 0.008 0.748 0.000 0.232 0.012
#> SRR1201754 3 0.5480 0.34215 0.000 0.184 0.564 0.000 0.000 0.252
#> SRR1201753 3 0.2070 0.62403 0.000 0.100 0.892 0.000 0.000 0.008
#> SRR1201758 5 0.2186 0.56581 0.000 0.000 0.056 0.012 0.908 0.024
#> SRR1201759 5 0.2321 0.58211 0.000 0.000 0.052 0.008 0.900 0.040
#> SRR1201760 3 0.2262 0.61670 0.000 0.016 0.896 0.000 0.080 0.008
#> SRR1201761 3 0.4936 0.35744 0.000 0.016 0.632 0.000 0.060 0.292
#> SRR1201763 4 0.0146 0.90769 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1201762 4 0.0790 0.90176 0.000 0.000 0.000 0.968 0.032 0.000
#> SRR1201764 4 0.2400 0.80929 0.000 0.000 0.116 0.872 0.008 0.004
#> SRR1201766 2 0.2068 0.85806 0.000 0.916 0.048 0.000 0.020 0.016
#> SRR1201768 2 0.0622 0.88214 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1201769 2 0.0622 0.88289 0.000 0.980 0.000 0.000 0.008 0.012
#> SRR1201767 2 0.0820 0.88198 0.000 0.972 0.000 0.000 0.016 0.012
#> SRR1201770 2 0.0914 0.88262 0.000 0.968 0.000 0.000 0.016 0.016
#> SRR1201771 2 0.0725 0.88268 0.000 0.976 0.000 0.000 0.012 0.012
#> SRR1201772 2 0.0725 0.88228 0.000 0.976 0.000 0.000 0.012 0.012
#> SRR1201773 2 0.0820 0.88259 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1201774 2 0.0603 0.88062 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1201786 2 0.0458 0.87925 0.000 0.984 0.000 0.000 0.016 0.000
#> SRR1201784 2 0.0363 0.88004 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1201785 2 0.0458 0.87925 0.000 0.984 0.000 0.000 0.016 0.000
#> SRR1201778 2 0.2627 0.84135 0.000 0.884 0.064 0.000 0.036 0.016
#> SRR1201779 2 0.0458 0.87925 0.000 0.984 0.000 0.000 0.016 0.000
#> SRR1201781 2 0.0458 0.87925 0.000 0.984 0.000 0.000 0.016 0.000
#> SRR1201780 2 0.0547 0.87805 0.000 0.980 0.000 0.000 0.020 0.000
#> SRR1201783 2 0.0458 0.87925 0.000 0.984 0.000 0.000 0.016 0.000
#> SRR1201782 2 0.0458 0.87925 0.000 0.984 0.000 0.000 0.016 0.000
#> SRR1201798 2 0.1285 0.88207 0.000 0.944 0.000 0.000 0.004 0.052
#> SRR1201797 2 0.1152 0.88305 0.000 0.952 0.000 0.000 0.004 0.044
#> SRR1201796 2 0.1285 0.88207 0.000 0.944 0.000 0.000 0.004 0.052
#> SRR1201795 2 0.1082 0.88303 0.000 0.956 0.000 0.000 0.004 0.040
#> SRR1201799 2 0.1349 0.88157 0.000 0.940 0.000 0.000 0.004 0.056
#> SRR1201794 2 0.1010 0.88333 0.000 0.960 0.000 0.000 0.004 0.036
#> SRR1201793 2 0.1531 0.87893 0.000 0.928 0.000 0.000 0.004 0.068
#> SRR1201792 2 0.1219 0.88253 0.000 0.948 0.000 0.000 0.004 0.048
#> SRR1201791 2 0.1679 0.86875 0.000 0.936 0.036 0.000 0.012 0.016
#> SRR1201807 2 0.2487 0.86069 0.000 0.876 0.032 0.000 0.000 0.092
#> SRR1201808 2 0.2537 0.86105 0.000 0.872 0.032 0.000 0.000 0.096
#> SRR1201803 2 0.2728 0.85292 0.000 0.860 0.040 0.000 0.000 0.100
#> SRR1201804 2 0.2527 0.86268 0.000 0.876 0.040 0.000 0.000 0.084
#> SRR1201805 2 0.2560 0.85820 0.000 0.872 0.036 0.000 0.000 0.092
#> SRR1201806 2 0.2527 0.86268 0.000 0.876 0.040 0.000 0.000 0.084
#> SRR1201801 2 0.2462 0.86040 0.000 0.876 0.028 0.000 0.000 0.096
#> SRR1201802 2 0.2510 0.85799 0.000 0.872 0.028 0.000 0.000 0.100
#> SRR1201800 2 0.2373 0.84419 0.000 0.880 0.104 0.000 0.008 0.008
#> SRR1201814 2 0.2744 0.82418 0.000 0.840 0.016 0.000 0.000 0.144
#> SRR1201816 2 0.2744 0.82418 0.000 0.840 0.016 0.000 0.000 0.144
#> SRR1201815 2 0.2744 0.82418 0.000 0.840 0.016 0.000 0.000 0.144
#> SRR1201819 2 0.2704 0.82804 0.000 0.844 0.016 0.000 0.000 0.140
#> SRR1201820 2 0.2744 0.82418 0.000 0.840 0.016 0.000 0.000 0.144
#> SRR1201813 2 0.2466 0.84010 0.000 0.872 0.112 0.000 0.008 0.008
#> SRR1201817 2 0.2744 0.82418 0.000 0.840 0.016 0.000 0.000 0.144
#> SRR1201818 2 0.2821 0.81563 0.000 0.832 0.016 0.000 0.000 0.152
#> SRR1201825 3 0.4218 -0.04498 0.000 0.000 0.556 0.000 0.428 0.016
#> SRR1201827 4 0.2255 0.90545 0.000 0.016 0.004 0.892 0.000 0.088
#> SRR1201828 4 0.2039 0.91099 0.000 0.016 0.004 0.908 0.000 0.072
#> SRR1201826 4 0.3934 0.62592 0.000 0.000 0.204 0.752 0.016 0.028
#> SRR1201829 4 0.2592 0.88739 0.000 0.016 0.004 0.864 0.000 0.116
#> SRR1201830 4 0.2255 0.90493 0.000 0.016 0.004 0.892 0.000 0.088
#> SRR1201831 4 0.1923 0.91258 0.000 0.016 0.004 0.916 0.000 0.064
#> SRR1201832 4 0.2039 0.91132 0.000 0.016 0.004 0.908 0.000 0.072
#> SRR1201833 4 0.2356 0.90189 0.000 0.016 0.004 0.884 0.000 0.096
#> SRR1201865 5 0.7064 0.09209 0.000 0.064 0.312 0.000 0.324 0.300
#> SRR1201866 5 0.6720 0.29907 0.000 0.048 0.312 0.000 0.424 0.216
#> SRR1201867 5 0.6881 0.25774 0.000 0.056 0.324 0.000 0.388 0.232
#> SRR1201861 5 0.7048 0.17259 0.000 0.064 0.312 0.000 0.344 0.280
#> SRR1201862 5 0.7083 0.19479 0.000 0.072 0.276 0.000 0.372 0.280
#> SRR1201863 3 0.7115 -0.17038 0.000 0.072 0.332 0.000 0.272 0.324
#> SRR1201859 5 0.6057 0.26990 0.000 0.124 0.400 0.000 0.448 0.028
#> SRR1201864 5 0.7088 0.15677 0.000 0.068 0.320 0.000 0.332 0.280
#> SRR1201860 5 0.6856 0.22473 0.000 0.048 0.320 0.000 0.372 0.260
#> SRR1201873 3 0.5608 0.18112 0.000 0.000 0.540 0.000 0.260 0.200
#> SRR1201871 3 0.4181 -0.14597 0.000 0.000 0.512 0.000 0.476 0.012
#> SRR1201872 3 0.5643 0.14623 0.000 0.000 0.536 0.000 0.248 0.216
#> SRR1201980 3 0.4423 0.38059 0.000 0.020 0.644 0.000 0.016 0.320
#> SRR1201979 3 0.2547 0.59812 0.000 0.016 0.868 0.000 0.112 0.004
#> SRR1201982 3 0.3900 0.57972 0.000 0.048 0.764 0.000 0.008 0.180
#> SRR1201981 3 0.1793 0.63868 0.000 0.036 0.928 0.000 0.032 0.004
#> SRR1201998 3 0.3426 0.62349 0.000 0.068 0.808 0.000 0.000 0.124
#> SRR1201996 3 0.1788 0.64258 0.000 0.076 0.916 0.000 0.004 0.004
#> SRR1201997 3 0.3426 0.62391 0.000 0.068 0.808 0.000 0.000 0.124
#> SRR1202005 3 0.1812 0.64186 0.000 0.080 0.912 0.000 0.000 0.008
#> SRR1202006 3 0.3563 0.61477 0.000 0.108 0.800 0.000 0.000 0.092
#> SRR1202088 2 0.4064 0.72180 0.000 0.740 0.004 0.000 0.056 0.200
#> SRR1202087 5 0.4433 0.04141 0.000 0.416 0.016 0.000 0.560 0.008
#> SRR1202093 2 0.2176 0.86541 0.000 0.896 0.000 0.000 0.024 0.080
#> SRR1202092 2 0.3626 0.75349 0.000 0.784 0.028 0.000 0.176 0.012
#> SRR1202288 2 0.2862 0.83626 0.000 0.872 0.052 0.000 0.056 0.020
#> SRR1202289 2 0.0777 0.88380 0.000 0.972 0.000 0.000 0.004 0.024
#> SRR1202299 2 0.1970 0.87788 0.000 0.912 0.028 0.000 0.000 0.060
#> SRR1202298 2 0.1956 0.85791 0.000 0.908 0.080 0.000 0.008 0.004
#> SRR1202303 4 0.0291 0.90865 0.000 0.000 0.000 0.992 0.004 0.004
#> SRR1202372 2 0.2218 0.85834 0.000 0.884 0.012 0.000 0.000 0.104
#> SRR1202371 2 0.2637 0.83805 0.000 0.876 0.088 0.000 0.024 0.012
#> SRR1202563 3 0.5761 0.23491 0.000 0.120 0.600 0.000 0.240 0.040
#> SRR1202565 3 0.5063 0.40292 0.000 0.112 0.604 0.000 0.000 0.284
#> SRR1202564 3 0.5011 0.42343 0.000 0.112 0.616 0.000 0.000 0.272
#> SRR1202649 3 0.6094 0.00822 0.000 0.148 0.524 0.000 0.296 0.032
#> SRR1202650 3 0.4715 0.49498 0.000 0.164 0.712 0.000 0.108 0.016
#> SRR1202651 3 0.5595 0.25642 0.000 0.164 0.516 0.000 0.000 0.320
#> SRR1202843 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202845 3 0.1732 0.64371 0.000 0.072 0.920 0.000 0.004 0.004
#> SRR1202847 3 0.3423 0.62481 0.000 0.088 0.812 0.000 0.000 0.100
#> SRR1202846 3 0.3686 0.61512 0.000 0.088 0.788 0.000 0.000 0.124
#> SRR1202945 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.4845 0.72903 0.772 0.012 0.028 0.048 0.084 0.056
#> SRR1203008 1 0.3197 0.84840 0.868 0.008 0.048 0.044 0.008 0.024
#> SRR1203010 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.3452 0.57312 0.000 0.016 0.788 0.000 0.012 0.184
#> SRR1203131 3 0.1693 0.63086 0.000 0.020 0.932 0.000 0.044 0.004
#> SRR1203133 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203827 5 0.8095 0.15607 0.092 0.320 0.064 0.040 0.408 0.076
#> SRR1203828 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203842 1 0.8105 -0.12388 0.376 0.304 0.128 0.004 0.120 0.068
#> SRR1203843 1 0.0000 0.98587 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203845 3 0.3782 0.59557 0.000 0.124 0.780 0.000 0.000 0.096
#> SRR1203844 3 0.2218 0.62462 0.000 0.104 0.884 0.000 0.000 0.012
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["MAD", "hclust"]
# you can also extract it by
# res = res_list["MAD:hclust"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'MAD' method.
#> Subgroups are detected by 'hclust' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 2.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 0.997 0.999 0.3841 0.618 0.618
#> 3 3 1.000 0.974 0.987 0.0911 0.979 0.967
#> 4 4 1.000 0.978 0.987 0.0191 0.990 0.983
#> 5 5 0.871 0.956 0.971 0.0390 1.000 1.000
#> 6 6 0.815 0.931 0.960 0.0526 0.985 0.974
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 2
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0.000 0.998 0.000 1.000
#> SRR1201590 2 0.000 0.998 0.000 1.000
#> SRR1201593 2 0.000 0.998 0.000 1.000
#> SRR1201592 2 0.000 0.998 0.000 1.000
#> SRR1201617 2 0.000 0.998 0.000 1.000
#> SRR1201616 2 0.000 0.998 0.000 1.000
#> SRR1201619 2 0.000 0.998 0.000 1.000
#> SRR1201618 2 0.000 0.998 0.000 1.000
#> SRR1201620 2 0.000 0.998 0.000 1.000
#> SRR1201621 2 0.000 0.998 0.000 1.000
#> SRR1201623 2 0.000 0.998 0.000 1.000
#> SRR1201622 2 0.000 0.998 0.000 1.000
#> SRR1201624 2 0.000 0.998 0.000 1.000
#> SRR1201625 2 0.000 0.998 0.000 1.000
#> SRR1201626 2 0.706 0.764 0.192 0.808
#> SRR1201627 2 0.000 0.998 0.000 1.000
#> SRR1201628 2 0.000 0.998 0.000 1.000
#> SRR1201629 2 0.000 0.998 0.000 1.000
#> SRR1201630 2 0.000 0.998 0.000 1.000
#> SRR1201631 2 0.000 0.998 0.000 1.000
#> SRR1201641 2 0.000 0.998 0.000 1.000
#> SRR1201640 2 0.000 0.998 0.000 1.000
#> SRR1201643 2 0.000 0.998 0.000 1.000
#> SRR1201644 2 0.000 0.998 0.000 1.000
#> SRR1201661 2 0.000 0.998 0.000 1.000
#> SRR1201662 2 0.000 0.998 0.000 1.000
#> SRR1201663 2 0.000 0.998 0.000 1.000
#> SRR1201664 2 0.000 0.998 0.000 1.000
#> SRR1201665 2 0.000 0.998 0.000 1.000
#> SRR1201666 2 0.000 0.998 0.000 1.000
#> SRR1201667 2 0.000 0.998 0.000 1.000
#> SRR1201668 2 0.000 0.998 0.000 1.000
#> SRR1201670 2 0.000 0.998 0.000 1.000
#> SRR1201669 2 0.000 0.998 0.000 1.000
#> SRR1201673 2 0.000 0.998 0.000 1.000
#> SRR1201672 2 0.000 0.998 0.000 1.000
#> SRR1201671 2 0.000 0.998 0.000 1.000
#> SRR1201677 2 0.000 0.998 0.000 1.000
#> SRR1201676 2 0.000 0.998 0.000 1.000
#> SRR1201675 2 0.000 0.998 0.000 1.000
#> SRR1201674 2 0.000 0.998 0.000 1.000
#> SRR1201678 2 0.000 0.998 0.000 1.000
#> SRR1201682 2 0.000 0.998 0.000 1.000
#> SRR1201683 2 0.000 0.998 0.000 1.000
#> SRR1201680 2 0.000 0.998 0.000 1.000
#> SRR1201681 2 0.000 0.998 0.000 1.000
#> SRR1201679 2 0.000 0.998 0.000 1.000
#> SRR1201686 2 0.000 0.998 0.000 1.000
#> SRR1201687 2 0.000 0.998 0.000 1.000
#> SRR1201688 2 0.000 0.998 0.000 1.000
#> SRR1201689 2 0.000 0.998 0.000 1.000
#> SRR1201685 2 0.000 0.998 0.000 1.000
#> SRR1201692 2 0.000 0.998 0.000 1.000
#> SRR1201691 2 0.000 0.998 0.000 1.000
#> SRR1201690 2 0.000 0.998 0.000 1.000
#> SRR1201696 2 0.000 0.998 0.000 1.000
#> SRR1201695 2 0.000 0.998 0.000 1.000
#> SRR1201694 2 0.000 0.998 0.000 1.000
#> SRR1201693 2 0.000 0.998 0.000 1.000
#> SRR1201697 2 0.000 0.998 0.000 1.000
#> SRR1201698 2 0.000 0.998 0.000 1.000
#> SRR1201700 2 0.000 0.998 0.000 1.000
#> SRR1201708 2 0.000 0.998 0.000 1.000
#> SRR1201707 2 0.000 0.998 0.000 1.000
#> SRR1201706 2 0.000 0.998 0.000 1.000
#> SRR1201702 2 0.000 0.998 0.000 1.000
#> SRR1201705 2 0.000 0.998 0.000 1.000
#> SRR1201701 2 0.000 0.998 0.000 1.000
#> SRR1201704 2 0.000 0.998 0.000 1.000
#> SRR1201703 2 0.000 0.998 0.000 1.000
#> SRR1201716 2 0.000 0.998 0.000 1.000
#> SRR1201715 2 0.000 0.998 0.000 1.000
#> SRR1201717 2 0.000 0.998 0.000 1.000
#> SRR1201712 2 0.000 0.998 0.000 1.000
#> SRR1201709 2 0.000 0.998 0.000 1.000
#> SRR1201711 2 0.000 0.998 0.000 1.000
#> SRR1201714 2 0.000 0.998 0.000 1.000
#> SRR1201713 2 0.000 0.998 0.000 1.000
#> SRR1201710 2 0.000 0.998 0.000 1.000
#> SRR1201719 2 0.000 0.998 0.000 1.000
#> SRR1201718 2 0.000 0.998 0.000 1.000
#> SRR1201721 2 0.000 0.998 0.000 1.000
#> SRR1201720 2 0.000 0.998 0.000 1.000
#> SRR1201723 2 0.000 0.998 0.000 1.000
#> SRR1201722 2 0.000 0.998 0.000 1.000
#> SRR1201725 2 0.000 0.998 0.000 1.000
#> SRR1201724 2 0.000 0.998 0.000 1.000
#> SRR1201726 2 0.000 0.998 0.000 1.000
#> SRR1201727 2 0.000 0.998 0.000 1.000
#> SRR1201731 2 0.000 0.998 0.000 1.000
#> SRR1201730 2 0.000 0.998 0.000 1.000
#> SRR1201734 2 0.000 0.998 0.000 1.000
#> SRR1201733 2 0.000 0.998 0.000 1.000
#> SRR1201736 2 0.000 0.998 0.000 1.000
#> SRR1201737 2 0.000 0.998 0.000 1.000
#> SRR1201739 2 0.000 0.998 0.000 1.000
#> SRR1201738 2 0.000 0.998 0.000 1.000
#> SRR1201742 2 0.000 0.998 0.000 1.000
#> SRR1201743 2 0.000 0.998 0.000 1.000
#> SRR1201745 2 0.000 0.998 0.000 1.000
#> SRR1201744 2 0.000 0.998 0.000 1.000
#> SRR1201749 2 0.000 0.998 0.000 1.000
#> SRR1201750 2 0.000 0.998 0.000 1.000
#> SRR1201752 2 0.000 0.998 0.000 1.000
#> SRR1201751 2 0.000 0.998 0.000 1.000
#> SRR1201754 2 0.000 0.998 0.000 1.000
#> SRR1201753 2 0.000 0.998 0.000 1.000
#> SRR1201758 2 0.000 0.998 0.000 1.000
#> SRR1201759 2 0.000 0.998 0.000 1.000
#> SRR1201760 2 0.000 0.998 0.000 1.000
#> SRR1201761 2 0.000 0.998 0.000 1.000
#> SRR1201763 2 0.000 0.998 0.000 1.000
#> SRR1201762 2 0.574 0.843 0.136 0.864
#> SRR1201764 2 0.000 0.998 0.000 1.000
#> SRR1201766 2 0.000 0.998 0.000 1.000
#> SRR1201768 2 0.000 0.998 0.000 1.000
#> SRR1201769 2 0.000 0.998 0.000 1.000
#> SRR1201767 2 0.000 0.998 0.000 1.000
#> SRR1201770 2 0.000 0.998 0.000 1.000
#> SRR1201771 2 0.000 0.998 0.000 1.000
#> SRR1201772 2 0.000 0.998 0.000 1.000
#> SRR1201773 2 0.000 0.998 0.000 1.000
#> SRR1201774 2 0.000 0.998 0.000 1.000
#> SRR1201786 2 0.000 0.998 0.000 1.000
#> SRR1201784 2 0.000 0.998 0.000 1.000
#> SRR1201785 2 0.000 0.998 0.000 1.000
#> SRR1201778 2 0.000 0.998 0.000 1.000
#> SRR1201779 2 0.000 0.998 0.000 1.000
#> SRR1201781 2 0.000 0.998 0.000 1.000
#> SRR1201780 2 0.000 0.998 0.000 1.000
#> SRR1201783 2 0.000 0.998 0.000 1.000
#> SRR1201782 2 0.000 0.998 0.000 1.000
#> SRR1201798 2 0.000 0.998 0.000 1.000
#> SRR1201797 2 0.000 0.998 0.000 1.000
#> SRR1201796 2 0.000 0.998 0.000 1.000
#> SRR1201795 2 0.000 0.998 0.000 1.000
#> SRR1201799 2 0.000 0.998 0.000 1.000
#> SRR1201794 2 0.000 0.998 0.000 1.000
#> SRR1201793 2 0.000 0.998 0.000 1.000
#> SRR1201792 2 0.000 0.998 0.000 1.000
#> SRR1201791 2 0.000 0.998 0.000 1.000
#> SRR1201807 2 0.000 0.998 0.000 1.000
#> SRR1201808 2 0.000 0.998 0.000 1.000
#> SRR1201803 2 0.000 0.998 0.000 1.000
#> SRR1201804 2 0.000 0.998 0.000 1.000
#> SRR1201805 2 0.000 0.998 0.000 1.000
#> SRR1201806 2 0.000 0.998 0.000 1.000
#> SRR1201801 2 0.000 0.998 0.000 1.000
#> SRR1201802 2 0.000 0.998 0.000 1.000
#> SRR1201800 2 0.000 0.998 0.000 1.000
#> SRR1201814 2 0.000 0.998 0.000 1.000
#> SRR1201816 2 0.000 0.998 0.000 1.000
#> SRR1201815 2 0.000 0.998 0.000 1.000
#> SRR1201819 2 0.000 0.998 0.000 1.000
#> SRR1201820 2 0.000 0.998 0.000 1.000
#> SRR1201813 2 0.000 0.998 0.000 1.000
#> SRR1201817 2 0.000 0.998 0.000 1.000
#> SRR1201818 2 0.000 0.998 0.000 1.000
#> SRR1201825 2 0.000 0.998 0.000 1.000
#> SRR1201827 2 0.000 0.998 0.000 1.000
#> SRR1201828 2 0.000 0.998 0.000 1.000
#> SRR1201826 2 0.000 0.998 0.000 1.000
#> SRR1201829 2 0.000 0.998 0.000 1.000
#> SRR1201830 2 0.000 0.998 0.000 1.000
#> SRR1201831 2 0.000 0.998 0.000 1.000
#> SRR1201832 2 0.000 0.998 0.000 1.000
#> SRR1201833 2 0.000 0.998 0.000 1.000
#> SRR1201865 2 0.000 0.998 0.000 1.000
#> SRR1201866 2 0.000 0.998 0.000 1.000
#> SRR1201867 2 0.000 0.998 0.000 1.000
#> SRR1201861 2 0.000 0.998 0.000 1.000
#> SRR1201862 2 0.000 0.998 0.000 1.000
#> SRR1201863 2 0.000 0.998 0.000 1.000
#> SRR1201859 2 0.000 0.998 0.000 1.000
#> SRR1201864 2 0.000 0.998 0.000 1.000
#> SRR1201860 2 0.000 0.998 0.000 1.000
#> SRR1201873 2 0.000 0.998 0.000 1.000
#> SRR1201871 2 0.000 0.998 0.000 1.000
#> SRR1201872 2 0.000 0.998 0.000 1.000
#> SRR1201980 2 0.000 0.998 0.000 1.000
#> SRR1201979 2 0.000 0.998 0.000 1.000
#> SRR1201982 2 0.000 0.998 0.000 1.000
#> SRR1201981 2 0.000 0.998 0.000 1.000
#> SRR1201998 2 0.000 0.998 0.000 1.000
#> SRR1201996 2 0.000 0.998 0.000 1.000
#> SRR1201997 2 0.000 0.998 0.000 1.000
#> SRR1202005 2 0.000 0.998 0.000 1.000
#> SRR1202006 2 0.000 0.998 0.000 1.000
#> SRR1202088 2 0.000 0.998 0.000 1.000
#> SRR1202087 2 0.000 0.998 0.000 1.000
#> SRR1202093 2 0.000 0.998 0.000 1.000
#> SRR1202092 2 0.000 0.998 0.000 1.000
#> SRR1202288 2 0.000 0.998 0.000 1.000
#> SRR1202289 2 0.000 0.998 0.000 1.000
#> SRR1202299 2 0.000 0.998 0.000 1.000
#> SRR1202298 2 0.000 0.998 0.000 1.000
#> SRR1202303 2 0.000 0.998 0.000 1.000
#> SRR1202372 2 0.000 0.998 0.000 1.000
#> SRR1202371 2 0.000 0.998 0.000 1.000
#> SRR1202563 2 0.000 0.998 0.000 1.000
#> SRR1202565 2 0.000 0.998 0.000 1.000
#> SRR1202564 2 0.000 0.998 0.000 1.000
#> SRR1202649 2 0.000 0.998 0.000 1.000
#> SRR1202650 2 0.000 0.998 0.000 1.000
#> SRR1202651 2 0.000 0.998 0.000 1.000
#> SRR1202843 1 0.000 1.000 1.000 0.000
#> SRR1202844 1 0.000 1.000 1.000 0.000
#> SRR1202845 2 0.000 0.998 0.000 1.000
#> SRR1202847 2 0.000 0.998 0.000 1.000
#> SRR1202846 2 0.000 0.998 0.000 1.000
#> SRR1202945 1 0.000 1.000 1.000 0.000
#> SRR1202949 1 0.000 1.000 1.000 0.000
#> SRR1202977 1 0.000 1.000 1.000 0.000
#> SRR1202978 1 0.000 1.000 1.000 0.000
#> SRR1202979 1 0.000 1.000 1.000 0.000
#> SRR1202990 1 0.000 1.000 1.000 0.000
#> SRR1202999 1 0.000 1.000 1.000 0.000
#> SRR1203005 1 0.000 1.000 1.000 0.000
#> SRR1203006 1 0.000 1.000 1.000 0.000
#> SRR1203007 1 0.000 1.000 1.000 0.000
#> SRR1203009 1 0.000 1.000 1.000 0.000
#> SRR1203008 1 0.000 1.000 1.000 0.000
#> SRR1203010 1 0.000 1.000 1.000 0.000
#> SRR1203011 1 0.000 1.000 1.000 0.000
#> SRR1203025 1 0.000 1.000 1.000 0.000
#> SRR1203026 1 0.000 1.000 1.000 0.000
#> SRR1203027 1 0.000 1.000 1.000 0.000
#> SRR1203061 1 0.000 1.000 1.000 0.000
#> SRR1203089 1 0.000 1.000 1.000 0.000
#> SRR1203125 1 0.000 1.000 1.000 0.000
#> SRR1203128 1 0.000 1.000 1.000 0.000
#> SRR1203129 1 0.000 1.000 1.000 0.000
#> SRR1203130 1 0.000 1.000 1.000 0.000
#> SRR1203132 2 0.000 0.998 0.000 1.000
#> SRR1203131 2 0.000 0.998 0.000 1.000
#> SRR1203133 1 0.000 1.000 1.000 0.000
#> SRR1203138 1 0.000 1.000 1.000 0.000
#> SRR1203760 1 0.000 1.000 1.000 0.000
#> SRR1203761 1 0.000 1.000 1.000 0.000
#> SRR1203770 1 0.000 1.000 1.000 0.000
#> SRR1203771 1 0.000 1.000 1.000 0.000
#> SRR1203772 1 0.000 1.000 1.000 0.000
#> SRR1203773 1 0.000 1.000 1.000 0.000
#> SRR1203774 1 0.000 1.000 1.000 0.000
#> SRR1203775 1 0.000 1.000 1.000 0.000
#> SRR1203800 1 0.000 1.000 1.000 0.000
#> SRR1203801 1 0.000 1.000 1.000 0.000
#> SRR1203802 1 0.000 1.000 1.000 0.000
#> SRR1203803 1 0.000 1.000 1.000 0.000
#> SRR1203804 1 0.000 1.000 1.000 0.000
#> SRR1203805 1 0.000 1.000 1.000 0.000
#> SRR1203806 1 0.000 1.000 1.000 0.000
#> SRR1203807 1 0.000 1.000 1.000 0.000
#> SRR1203808 1 0.000 1.000 1.000 0.000
#> SRR1203811 1 0.000 1.000 1.000 0.000
#> SRR1203812 1 0.000 1.000 1.000 0.000
#> SRR1203813 1 0.000 1.000 1.000 0.000
#> SRR1203814 1 0.000 1.000 1.000 0.000
#> SRR1203815 1 0.000 1.000 1.000 0.000
#> SRR1203816 1 0.000 1.000 1.000 0.000
#> SRR1203817 1 0.000 1.000 1.000 0.000
#> SRR1203818 1 0.000 1.000 1.000 0.000
#> SRR1203819 1 0.000 1.000 1.000 0.000
#> SRR1203822 1 0.000 1.000 1.000 0.000
#> SRR1203823 1 0.000 1.000 1.000 0.000
#> SRR1203824 1 0.000 1.000 1.000 0.000
#> SRR1203825 1 0.000 1.000 1.000 0.000
#> SRR1203826 1 0.000 1.000 1.000 0.000
#> SRR1203827 1 0.000 1.000 1.000 0.000
#> SRR1203828 1 0.000 1.000 1.000 0.000
#> SRR1203829 1 0.000 1.000 1.000 0.000
#> SRR1203830 1 0.000 1.000 1.000 0.000
#> SRR1203831 1 0.000 1.000 1.000 0.000
#> SRR1203832 1 0.000 1.000 1.000 0.000
#> SRR1203833 1 0.000 1.000 1.000 0.000
#> SRR1203834 1 0.000 1.000 1.000 0.000
#> SRR1203835 1 0.000 1.000 1.000 0.000
#> SRR1203836 1 0.000 1.000 1.000 0.000
#> SRR1203837 1 0.000 1.000 1.000 0.000
#> SRR1203838 1 0.000 1.000 1.000 0.000
#> SRR1203839 1 0.000 1.000 1.000 0.000
#> SRR1203842 1 0.000 1.000 1.000 0.000
#> SRR1203843 1 0.000 1.000 1.000 0.000
#> SRR1203845 2 0.000 0.998 0.000 1.000
#> SRR1203844 2 0.000 0.998 0.000 1.000
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201590 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201593 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201592 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201617 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201616 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201619 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201618 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201620 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201621 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201623 2 0.0237 0.9790 0.000 0.996 0.004
#> SRR1201622 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201624 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201625 3 0.0000 1.0000 0.000 0.000 1.000
#> SRR1201626 2 0.9340 0.0365 0.192 0.500 0.308
#> SRR1201627 3 0.0000 1.0000 0.000 0.000 1.000
#> SRR1201628 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201629 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201630 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201631 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201641 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201640 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201643 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201644 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201661 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201662 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201663 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201664 2 0.2537 0.9277 0.000 0.920 0.080
#> SRR1201665 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201666 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201667 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201668 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201670 2 0.2537 0.9277 0.000 0.920 0.080
#> SRR1201669 2 0.2537 0.9277 0.000 0.920 0.080
#> SRR1201673 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201672 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201671 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201677 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201676 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201675 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201674 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201678 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201682 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201683 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201680 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201681 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201679 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201686 2 0.2537 0.9277 0.000 0.920 0.080
#> SRR1201687 2 0.2537 0.9277 0.000 0.920 0.080
#> SRR1201688 2 0.2537 0.9277 0.000 0.920 0.080
#> SRR1201689 2 0.2537 0.9277 0.000 0.920 0.080
#> SRR1201685 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201692 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201691 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201690 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201696 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201695 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201694 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201693 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201697 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201698 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201700 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201708 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201707 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201706 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201702 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201705 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201701 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201704 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201703 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201716 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201715 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201717 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201712 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201709 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201711 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201714 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201713 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201710 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201719 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201718 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201721 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201720 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201723 2 0.2537 0.9277 0.000 0.920 0.080
#> SRR1201722 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201725 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201724 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201726 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201727 2 0.2261 0.9377 0.000 0.932 0.068
#> SRR1201731 2 0.2261 0.9377 0.000 0.932 0.068
#> SRR1201730 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201734 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201733 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201736 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201737 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201739 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201738 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201742 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201743 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201745 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201744 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201749 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201750 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201752 2 0.1860 0.9487 0.000 0.948 0.052
#> SRR1201751 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201754 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201753 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201758 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201759 2 0.2537 0.9277 0.000 0.920 0.080
#> SRR1201760 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201761 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201763 3 0.0000 1.0000 0.000 0.000 1.000
#> SRR1201762 2 0.8803 0.1780 0.136 0.544 0.320
#> SRR1201764 2 0.1031 0.9638 0.000 0.976 0.024
#> SRR1201766 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201768 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201769 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201767 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201770 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201771 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201772 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201773 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201774 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201786 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201784 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201785 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201778 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201779 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201781 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201780 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201783 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201782 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201798 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201797 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201796 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201795 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201799 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201794 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201793 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201792 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201791 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201807 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201808 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201803 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201804 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201805 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201806 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201801 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201802 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201800 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201814 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201816 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201815 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201819 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201820 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201813 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201817 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201818 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201825 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201827 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201828 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201826 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201829 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201830 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201831 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201832 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201833 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201865 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201866 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201867 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201861 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201862 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201863 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201859 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201864 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201860 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201873 2 0.0424 0.9766 0.000 0.992 0.008
#> SRR1201871 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201872 2 0.0424 0.9766 0.000 0.992 0.008
#> SRR1201980 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201979 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201982 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1201981 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201998 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201996 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1201997 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202005 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202006 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202088 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202087 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202093 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202092 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202288 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202289 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202299 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202298 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202303 3 0.0000 1.0000 0.000 0.000 1.000
#> SRR1202372 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202371 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202563 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202565 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202564 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202649 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202650 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202651 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202843 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1202844 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1202845 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202847 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202846 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1202945 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1202949 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1202977 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1202978 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1202979 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1202990 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1202999 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203005 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203006 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203007 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203009 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203008 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203010 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203011 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203025 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203026 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203027 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203061 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203089 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203125 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203128 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203129 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203130 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203132 2 0.2165 0.9407 0.000 0.936 0.064
#> SRR1203131 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1203133 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203138 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203760 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203761 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203770 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203771 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203772 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203773 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203774 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203775 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203800 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203801 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203802 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203803 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203804 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203805 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203806 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203807 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203808 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203811 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203812 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203813 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203814 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203815 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203816 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203817 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203818 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203819 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203822 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203823 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203824 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203825 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203826 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203827 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203828 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203829 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203830 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203831 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203832 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203833 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203834 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203835 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203836 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203837 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203838 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203839 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203842 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203843 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203845 2 0.0000 0.9813 0.000 1.000 0.000
#> SRR1203844 2 0.0000 0.9813 0.000 1.000 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201590 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1201593 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201592 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1201617 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201616 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1201619 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201618 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1201620 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1201621 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201623 2 0.0188 0.982 0.000 0.996 0.004 0.000
#> SRR1201622 2 0.0336 0.981 0.000 0.992 0.000 0.008
#> SRR1201624 2 0.1118 0.962 0.000 0.964 0.000 0.036
#> SRR1201625 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1201626 4 0.0817 0.653 0.024 0.000 0.000 0.976
#> SRR1201627 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1201628 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201629 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201630 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201631 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201641 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201640 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201643 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201644 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201661 2 0.0188 0.981 0.000 0.996 0.000 0.004
#> SRR1201662 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201663 2 0.0188 0.982 0.000 0.996 0.000 0.004
#> SRR1201664 2 0.2197 0.929 0.000 0.916 0.080 0.004
#> SRR1201665 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1201666 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201667 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201668 2 0.0707 0.975 0.000 0.980 0.000 0.020
#> SRR1201670 2 0.2197 0.929 0.000 0.916 0.080 0.004
#> SRR1201669 2 0.2197 0.929 0.000 0.916 0.080 0.004
#> SRR1201673 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201672 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201671 2 0.0469 0.979 0.000 0.988 0.000 0.012
#> SRR1201677 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201676 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201675 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201674 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201678 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201682 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201683 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201680 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201681 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201679 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1201686 2 0.2197 0.929 0.000 0.916 0.080 0.004
#> SRR1201687 2 0.2197 0.929 0.000 0.916 0.080 0.004
#> SRR1201688 2 0.2197 0.929 0.000 0.916 0.080 0.004
#> SRR1201689 2 0.2197 0.929 0.000 0.916 0.080 0.004
#> SRR1201685 2 0.0921 0.969 0.000 0.972 0.000 0.028
#> SRR1201692 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201691 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201690 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201696 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201695 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201694 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201693 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201697 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201698 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201700 2 0.0188 0.982 0.000 0.996 0.000 0.004
#> SRR1201708 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201707 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201706 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201702 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201705 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201701 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201704 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201703 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201716 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201715 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201717 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201712 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201709 2 0.0188 0.982 0.000 0.996 0.000 0.004
#> SRR1201711 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201714 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201713 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201710 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201719 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201718 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201721 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201720 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201723 2 0.2197 0.929 0.000 0.916 0.080 0.004
#> SRR1201722 2 0.0188 0.982 0.000 0.996 0.000 0.004
#> SRR1201725 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201724 2 0.0188 0.982 0.000 0.996 0.000 0.004
#> SRR1201726 2 0.0188 0.982 0.000 0.996 0.000 0.004
#> SRR1201727 2 0.1978 0.939 0.000 0.928 0.068 0.004
#> SRR1201731 2 0.1978 0.939 0.000 0.928 0.068 0.004
#> SRR1201730 2 0.0188 0.982 0.000 0.996 0.000 0.004
#> SRR1201734 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201733 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1201736 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1201737 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201739 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201738 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1201742 2 0.0469 0.979 0.000 0.988 0.000 0.012
#> SRR1201743 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201745 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201744 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1201749 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1201750 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201752 2 0.1661 0.950 0.000 0.944 0.052 0.004
#> SRR1201751 2 0.0469 0.979 0.000 0.988 0.000 0.012
#> SRR1201754 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201753 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1201758 2 0.1022 0.966 0.000 0.968 0.000 0.032
#> SRR1201759 2 0.2197 0.929 0.000 0.916 0.080 0.004
#> SRR1201760 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201761 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201763 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1201762 4 0.4831 0.592 0.000 0.040 0.208 0.752
#> SRR1201764 2 0.1284 0.962 0.000 0.964 0.024 0.012
#> SRR1201766 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1201768 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201769 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201767 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201770 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201771 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201772 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201773 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201774 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201786 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201784 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201785 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201778 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1201779 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201781 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201780 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201783 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201782 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201798 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201797 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201796 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201795 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201799 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201794 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201793 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201792 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201791 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1201807 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201808 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201803 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201804 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201805 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201806 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201801 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201802 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201800 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1201814 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201816 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201815 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201819 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201820 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201813 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1201817 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201818 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201825 2 0.0592 0.977 0.000 0.984 0.000 0.016
#> SRR1201827 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201828 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201826 2 0.0188 0.981 0.000 0.996 0.000 0.004
#> SRR1201829 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201830 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201831 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201832 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201833 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201865 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201866 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201867 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201861 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201862 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201863 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201859 2 0.0469 0.979 0.000 0.988 0.000 0.012
#> SRR1201864 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201860 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201873 2 0.0336 0.980 0.000 0.992 0.008 0.000
#> SRR1201871 2 0.0188 0.982 0.000 0.996 0.000 0.004
#> SRR1201872 2 0.0336 0.980 0.000 0.992 0.008 0.000
#> SRR1201980 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201979 2 0.0188 0.982 0.000 0.996 0.000 0.004
#> SRR1201982 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1201981 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201998 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201996 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1201997 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1202005 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1202006 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1202088 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1202087 2 0.0336 0.981 0.000 0.992 0.000 0.008
#> SRR1202093 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1202092 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1202288 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1202289 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1202299 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1202298 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1202303 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1202372 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1202371 2 0.0336 0.980 0.000 0.992 0.000 0.008
#> SRR1202563 2 0.0188 0.981 0.000 0.996 0.000 0.004
#> SRR1202565 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1202564 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1202649 2 0.0188 0.981 0.000 0.996 0.000 0.004
#> SRR1202650 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1202651 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1202843 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1202845 2 0.0188 0.981 0.000 0.996 0.000 0.004
#> SRR1202847 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1202846 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1202945 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203132 2 0.1902 0.942 0.000 0.932 0.064 0.004
#> SRR1203131 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1203133 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203827 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203828 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203842 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203843 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203845 2 0.0000 0.983 0.000 1.000 0.000 0.000
#> SRR1203844 2 0.0188 0.981 0.000 0.996 0.000 0.004
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201590 2 0.1197 0.945 0 0.952 0.000 0.000 0.048
#> SRR1201593 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201592 2 0.1197 0.945 0 0.952 0.000 0.000 0.048
#> SRR1201617 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201616 2 0.1197 0.945 0 0.952 0.000 0.000 0.048
#> SRR1201619 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201618 2 0.1197 0.948 0 0.952 0.000 0.000 0.048
#> SRR1201620 2 0.1197 0.945 0 0.952 0.000 0.000 0.048
#> SRR1201621 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201623 2 0.0671 0.961 0 0.980 0.000 0.004 0.016
#> SRR1201622 2 0.1043 0.957 0 0.960 0.000 0.000 0.040
#> SRR1201624 2 0.2763 0.872 0 0.848 0.004 0.000 0.148
#> SRR1201625 4 0.0000 1.000 0 0.000 0.000 1.000 0.000
#> SRR1201626 3 0.0000 0.000 0 0.000 1.000 0.000 0.000
#> SRR1201627 4 0.0000 1.000 0 0.000 0.000 1.000 0.000
#> SRR1201628 2 0.0794 0.961 0 0.972 0.000 0.000 0.028
#> SRR1201629 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201630 2 0.0404 0.963 0 0.988 0.000 0.000 0.012
#> SRR1201631 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201641 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201640 2 0.0162 0.964 0 0.996 0.000 0.000 0.004
#> SRR1201643 2 0.0609 0.960 0 0.980 0.000 0.000 0.020
#> SRR1201644 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201661 2 0.1121 0.947 0 0.956 0.000 0.000 0.044
#> SRR1201662 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201663 2 0.1197 0.951 0 0.952 0.000 0.000 0.048
#> SRR1201664 2 0.2903 0.900 0 0.872 0.000 0.080 0.048
#> SRR1201665 2 0.1197 0.945 0 0.952 0.000 0.000 0.048
#> SRR1201666 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201667 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201668 2 0.2230 0.911 0 0.884 0.000 0.000 0.116
#> SRR1201670 2 0.2903 0.900 0 0.872 0.000 0.080 0.048
#> SRR1201669 2 0.2903 0.900 0 0.872 0.000 0.080 0.048
#> SRR1201673 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201672 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201671 2 0.1270 0.953 0 0.948 0.000 0.000 0.052
#> SRR1201677 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201676 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201675 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201674 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201678 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201682 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201683 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201680 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201681 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201679 2 0.1197 0.945 0 0.952 0.000 0.000 0.048
#> SRR1201686 2 0.2903 0.900 0 0.872 0.000 0.080 0.048
#> SRR1201687 2 0.2903 0.900 0 0.872 0.000 0.080 0.048
#> SRR1201688 2 0.2903 0.900 0 0.872 0.000 0.080 0.048
#> SRR1201689 2 0.2903 0.900 0 0.872 0.000 0.080 0.048
#> SRR1201685 2 0.2516 0.886 0 0.860 0.000 0.000 0.140
#> SRR1201692 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201691 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201690 2 0.0609 0.962 0 0.980 0.000 0.000 0.020
#> SRR1201696 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201695 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201694 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201693 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201697 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201698 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201700 2 0.1121 0.953 0 0.956 0.000 0.000 0.044
#> SRR1201708 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201707 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201706 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201702 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201705 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201701 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201704 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201703 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201716 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201715 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201717 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201712 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201709 2 0.1197 0.951 0 0.952 0.000 0.000 0.048
#> SRR1201711 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201714 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201713 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201710 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201719 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201718 2 0.0703 0.959 0 0.976 0.000 0.000 0.024
#> SRR1201721 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201720 2 0.0703 0.961 0 0.976 0.000 0.000 0.024
#> SRR1201723 2 0.2903 0.900 0 0.872 0.000 0.080 0.048
#> SRR1201722 2 0.1197 0.951 0 0.952 0.000 0.000 0.048
#> SRR1201725 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201724 2 0.1121 0.955 0 0.956 0.000 0.000 0.044
#> SRR1201726 2 0.1197 0.953 0 0.952 0.000 0.000 0.048
#> SRR1201727 2 0.2719 0.909 0 0.884 0.000 0.068 0.048
#> SRR1201731 2 0.2491 0.917 0 0.896 0.000 0.068 0.036
#> SRR1201730 2 0.1121 0.955 0 0.956 0.000 0.000 0.044
#> SRR1201734 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201733 2 0.1197 0.945 0 0.952 0.000 0.000 0.048
#> SRR1201736 2 0.1544 0.941 0 0.932 0.000 0.000 0.068
#> SRR1201737 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201739 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201738 2 0.1197 0.945 0 0.952 0.000 0.000 0.048
#> SRR1201742 2 0.1043 0.955 0 0.960 0.000 0.000 0.040
#> SRR1201743 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201745 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201744 2 0.1197 0.945 0 0.952 0.000 0.000 0.048
#> SRR1201749 2 0.1121 0.947 0 0.956 0.000 0.000 0.044
#> SRR1201750 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201752 2 0.2139 0.930 0 0.916 0.000 0.052 0.032
#> SRR1201751 2 0.1197 0.955 0 0.952 0.000 0.000 0.048
#> SRR1201754 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201753 2 0.1121 0.947 0 0.956 0.000 0.000 0.044
#> SRR1201758 2 0.2648 0.872 0 0.848 0.000 0.000 0.152
#> SRR1201759 2 0.2903 0.900 0 0.872 0.000 0.080 0.048
#> SRR1201760 2 0.0510 0.962 0 0.984 0.000 0.000 0.016
#> SRR1201761 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201763 4 0.0000 1.000 0 0.000 0.000 1.000 0.000
#> SRR1201762 5 0.2818 0.000 0 0.012 0.132 0.000 0.856
#> SRR1201764 2 0.2761 0.896 0 0.872 0.000 0.024 0.104
#> SRR1201766 2 0.1197 0.945 0 0.952 0.000 0.000 0.048
#> SRR1201768 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201769 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201767 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201770 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201771 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201772 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201773 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201774 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201786 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201784 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201785 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201778 2 0.1197 0.945 0 0.952 0.000 0.000 0.048
#> SRR1201779 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201781 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201780 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201783 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201782 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201798 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201797 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201796 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201795 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201799 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201794 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201793 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201792 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201791 2 0.1197 0.945 0 0.952 0.000 0.000 0.048
#> SRR1201807 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201808 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201803 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201804 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201805 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201806 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201801 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201802 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201800 2 0.1197 0.945 0 0.952 0.000 0.000 0.048
#> SRR1201814 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201816 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201815 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201819 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201820 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201813 2 0.1197 0.945 0 0.952 0.000 0.000 0.048
#> SRR1201817 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201818 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201825 2 0.1965 0.926 0 0.904 0.000 0.000 0.096
#> SRR1201827 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201828 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201826 2 0.1121 0.950 0 0.956 0.000 0.000 0.044
#> SRR1201829 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201830 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201831 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201832 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201833 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201865 2 0.0510 0.962 0 0.984 0.000 0.000 0.016
#> SRR1201866 2 0.0510 0.962 0 0.984 0.000 0.000 0.016
#> SRR1201867 2 0.0510 0.962 0 0.984 0.000 0.000 0.016
#> SRR1201861 2 0.0510 0.962 0 0.984 0.000 0.000 0.016
#> SRR1201862 2 0.0510 0.962 0 0.984 0.000 0.000 0.016
#> SRR1201863 2 0.0510 0.962 0 0.984 0.000 0.000 0.016
#> SRR1201859 2 0.1341 0.949 0 0.944 0.000 0.000 0.056
#> SRR1201864 2 0.0510 0.962 0 0.984 0.000 0.000 0.016
#> SRR1201860 2 0.0510 0.962 0 0.984 0.000 0.000 0.016
#> SRR1201873 2 0.0798 0.960 0 0.976 0.000 0.008 0.016
#> SRR1201871 2 0.1197 0.956 0 0.952 0.000 0.000 0.048
#> SRR1201872 2 0.0798 0.960 0 0.976 0.000 0.008 0.016
#> SRR1201980 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201979 2 0.1121 0.953 0 0.956 0.000 0.000 0.044
#> SRR1201982 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1201981 2 0.0404 0.963 0 0.988 0.000 0.000 0.012
#> SRR1201998 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201996 2 0.0963 0.953 0 0.964 0.000 0.000 0.036
#> SRR1201997 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1202005 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1202006 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1202088 2 0.0162 0.964 0 0.996 0.000 0.000 0.004
#> SRR1202087 2 0.1341 0.951 0 0.944 0.000 0.000 0.056
#> SRR1202093 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1202092 2 0.1197 0.945 0 0.952 0.000 0.000 0.048
#> SRR1202288 2 0.1197 0.945 0 0.952 0.000 0.000 0.048
#> SRR1202289 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1202299 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1202298 2 0.1197 0.945 0 0.952 0.000 0.000 0.048
#> SRR1202303 4 0.0000 1.000 0 0.000 0.000 1.000 0.000
#> SRR1202372 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1202371 2 0.1197 0.945 0 0.952 0.000 0.000 0.048
#> SRR1202563 2 0.1197 0.948 0 0.952 0.000 0.000 0.048
#> SRR1202565 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1202564 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1202649 2 0.1121 0.950 0 0.956 0.000 0.000 0.044
#> SRR1202650 2 0.0794 0.959 0 0.972 0.000 0.000 0.028
#> SRR1202651 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1202843 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202845 2 0.1121 0.947 0 0.956 0.000 0.000 0.044
#> SRR1202847 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1202846 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1202945 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203132 2 0.2426 0.919 0 0.900 0.000 0.064 0.036
#> SRR1203131 2 0.0703 0.961 0 0.976 0.000 0.000 0.024
#> SRR1203133 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203827 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203828 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203842 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203843 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203845 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1203844 2 0.1121 0.947 0 0.956 0.000 0.000 0.044
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201590 3 0.1204 0.922 0 0.000 0.944 0.000 0.056 0
#> SRR1201593 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201592 3 0.1204 0.922 0 0.000 0.944 0.000 0.056 0
#> SRR1201617 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201616 3 0.1204 0.922 0 0.000 0.944 0.000 0.056 0
#> SRR1201619 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201618 3 0.1204 0.927 0 0.000 0.944 0.000 0.056 0
#> SRR1201620 3 0.1204 0.922 0 0.000 0.944 0.000 0.056 0
#> SRR1201621 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201623 3 0.0858 0.940 0 0.000 0.968 0.004 0.028 0
#> SRR1201622 3 0.1910 0.901 0 0.000 0.892 0.000 0.108 0
#> SRR1201624 5 0.1349 0.579 0 0.004 0.056 0.000 0.940 0
#> SRR1201625 4 0.0000 1.000 0 0.000 0.000 1.000 0.000 0
#> SRR1201626 2 0.0000 0.000 0 1.000 0.000 0.000 0.000 0
#> SRR1201627 4 0.0000 1.000 0 0.000 0.000 1.000 0.000 0
#> SRR1201628 3 0.1204 0.932 0 0.000 0.944 0.000 0.056 0
#> SRR1201629 3 0.2384 0.892 0 0.000 0.888 0.064 0.048 0
#> SRR1201630 3 0.0865 0.938 0 0.000 0.964 0.000 0.036 0
#> SRR1201631 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201641 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201640 3 0.0363 0.944 0 0.000 0.988 0.000 0.012 0
#> SRR1201643 3 0.0865 0.939 0 0.000 0.964 0.000 0.036 0
#> SRR1201644 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201661 3 0.1267 0.922 0 0.000 0.940 0.000 0.060 0
#> SRR1201662 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201663 3 0.2178 0.877 0 0.000 0.868 0.000 0.132 0
#> SRR1201664 3 0.3586 0.803 0 0.000 0.796 0.080 0.124 0
#> SRR1201665 3 0.1204 0.922 0 0.000 0.944 0.000 0.056 0
#> SRR1201666 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201667 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201668 3 0.3747 0.366 0 0.000 0.604 0.000 0.396 0
#> SRR1201670 3 0.3586 0.803 0 0.000 0.796 0.080 0.124 0
#> SRR1201669 3 0.3586 0.803 0 0.000 0.796 0.080 0.124 0
#> SRR1201673 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201672 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201671 3 0.1444 0.927 0 0.000 0.928 0.000 0.072 0
#> SRR1201677 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201676 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201675 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201674 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201678 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201682 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201683 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201680 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201681 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201679 3 0.1075 0.927 0 0.000 0.952 0.000 0.048 0
#> SRR1201686 3 0.3586 0.803 0 0.000 0.796 0.080 0.124 0
#> SRR1201687 3 0.3586 0.803 0 0.000 0.796 0.080 0.124 0
#> SRR1201688 3 0.3586 0.803 0 0.000 0.796 0.080 0.124 0
#> SRR1201689 3 0.3586 0.803 0 0.000 0.796 0.080 0.124 0
#> SRR1201685 5 0.2697 0.465 0 0.000 0.188 0.000 0.812 0
#> SRR1201692 3 0.2448 0.889 0 0.000 0.884 0.064 0.052 0
#> SRR1201691 3 0.2448 0.889 0 0.000 0.884 0.064 0.052 0
#> SRR1201690 3 0.1141 0.932 0 0.000 0.948 0.000 0.052 0
#> SRR1201696 3 0.2448 0.889 0 0.000 0.884 0.064 0.052 0
#> SRR1201695 3 0.2448 0.889 0 0.000 0.884 0.064 0.052 0
#> SRR1201694 3 0.2448 0.889 0 0.000 0.884 0.064 0.052 0
#> SRR1201693 3 0.2448 0.889 0 0.000 0.884 0.064 0.052 0
#> SRR1201697 3 0.2448 0.889 0 0.000 0.884 0.064 0.052 0
#> SRR1201698 3 0.2448 0.889 0 0.000 0.884 0.064 0.052 0
#> SRR1201700 3 0.1714 0.910 0 0.000 0.908 0.000 0.092 0
#> SRR1201708 3 0.2448 0.889 0 0.000 0.884 0.064 0.052 0
#> SRR1201707 3 0.2448 0.889 0 0.000 0.884 0.064 0.052 0
#> SRR1201706 3 0.2448 0.889 0 0.000 0.884 0.064 0.052 0
#> SRR1201702 3 0.2448 0.889 0 0.000 0.884 0.064 0.052 0
#> SRR1201705 3 0.2448 0.889 0 0.000 0.884 0.064 0.052 0
#> SRR1201701 3 0.2448 0.889 0 0.000 0.884 0.064 0.052 0
#> SRR1201704 3 0.2448 0.889 0 0.000 0.884 0.064 0.052 0
#> SRR1201703 3 0.2448 0.889 0 0.000 0.884 0.064 0.052 0
#> SRR1201716 3 0.2511 0.886 0 0.000 0.880 0.064 0.056 0
#> SRR1201715 3 0.2511 0.886 0 0.000 0.880 0.064 0.056 0
#> SRR1201717 3 0.2511 0.886 0 0.000 0.880 0.064 0.056 0
#> SRR1201712 3 0.2511 0.886 0 0.000 0.880 0.064 0.056 0
#> SRR1201709 3 0.2048 0.888 0 0.000 0.880 0.000 0.120 0
#> SRR1201711 3 0.2511 0.886 0 0.000 0.880 0.064 0.056 0
#> SRR1201714 3 0.2511 0.886 0 0.000 0.880 0.064 0.056 0
#> SRR1201713 3 0.2511 0.886 0 0.000 0.880 0.064 0.056 0
#> SRR1201710 3 0.2511 0.886 0 0.000 0.880 0.064 0.056 0
#> SRR1201719 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201718 3 0.0790 0.940 0 0.000 0.968 0.000 0.032 0
#> SRR1201721 3 0.2448 0.889 0 0.000 0.884 0.064 0.052 0
#> SRR1201720 3 0.1444 0.925 0 0.000 0.928 0.000 0.072 0
#> SRR1201723 3 0.3586 0.803 0 0.000 0.796 0.080 0.124 0
#> SRR1201722 3 0.2219 0.873 0 0.000 0.864 0.000 0.136 0
#> SRR1201725 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201724 3 0.1267 0.934 0 0.000 0.940 0.000 0.060 0
#> SRR1201726 3 0.1863 0.902 0 0.000 0.896 0.000 0.104 0
#> SRR1201727 3 0.3297 0.831 0 0.000 0.820 0.068 0.112 0
#> SRR1201731 3 0.2442 0.889 0 0.000 0.884 0.068 0.048 0
#> SRR1201730 3 0.1610 0.916 0 0.000 0.916 0.000 0.084 0
#> SRR1201734 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201733 3 0.1204 0.922 0 0.000 0.944 0.000 0.056 0
#> SRR1201736 3 0.1444 0.922 0 0.000 0.928 0.000 0.072 0
#> SRR1201737 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201739 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201738 3 0.1204 0.922 0 0.000 0.944 0.000 0.056 0
#> SRR1201742 3 0.1267 0.931 0 0.000 0.940 0.000 0.060 0
#> SRR1201743 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201745 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201744 3 0.1204 0.922 0 0.000 0.944 0.000 0.056 0
#> SRR1201749 3 0.1141 0.925 0 0.000 0.948 0.000 0.052 0
#> SRR1201750 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201752 3 0.2201 0.901 0 0.000 0.900 0.052 0.048 0
#> SRR1201751 3 0.1501 0.925 0 0.000 0.924 0.000 0.076 0
#> SRR1201754 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201753 3 0.1141 0.925 0 0.000 0.948 0.000 0.052 0
#> SRR1201758 5 0.1204 0.586 0 0.000 0.056 0.000 0.944 0
#> SRR1201759 3 0.3586 0.803 0 0.000 0.796 0.080 0.124 0
#> SRR1201760 3 0.1141 0.932 0 0.000 0.948 0.000 0.052 0
#> SRR1201761 3 0.2448 0.889 0 0.000 0.884 0.064 0.052 0
#> SRR1201763 4 0.0000 1.000 0 0.000 0.000 1.000 0.000 0
#> SRR1201762 6 0.0000 0.000 0 0.000 0.000 0.000 0.000 1
#> SRR1201764 3 0.3025 0.826 0 0.000 0.820 0.024 0.156 0
#> SRR1201766 3 0.1204 0.922 0 0.000 0.944 0.000 0.056 0
#> SRR1201768 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201769 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201767 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201770 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201771 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201772 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201773 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201774 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201786 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201784 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201785 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201778 3 0.1204 0.922 0 0.000 0.944 0.000 0.056 0
#> SRR1201779 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201781 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201780 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201783 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201782 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201798 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201797 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201796 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201795 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201799 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201794 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201793 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201792 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201791 3 0.1204 0.922 0 0.000 0.944 0.000 0.056 0
#> SRR1201807 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201808 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201803 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201804 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201805 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201806 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201801 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201802 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201800 3 0.1204 0.922 0 0.000 0.944 0.000 0.056 0
#> SRR1201814 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201816 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201815 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201819 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201820 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201813 3 0.1204 0.922 0 0.000 0.944 0.000 0.056 0
#> SRR1201817 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201818 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201825 3 0.2178 0.879 0 0.000 0.868 0.000 0.132 0
#> SRR1201827 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201828 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201826 3 0.1267 0.927 0 0.000 0.940 0.000 0.060 0
#> SRR1201829 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201830 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201831 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201832 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201833 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201865 3 0.0547 0.943 0 0.000 0.980 0.000 0.020 0
#> SRR1201866 3 0.0547 0.943 0 0.000 0.980 0.000 0.020 0
#> SRR1201867 3 0.0547 0.943 0 0.000 0.980 0.000 0.020 0
#> SRR1201861 3 0.0547 0.943 0 0.000 0.980 0.000 0.020 0
#> SRR1201862 3 0.0547 0.943 0 0.000 0.980 0.000 0.020 0
#> SRR1201863 3 0.0547 0.943 0 0.000 0.980 0.000 0.020 0
#> SRR1201859 3 0.1663 0.913 0 0.000 0.912 0.000 0.088 0
#> SRR1201864 3 0.0547 0.943 0 0.000 0.980 0.000 0.020 0
#> SRR1201860 3 0.0547 0.943 0 0.000 0.980 0.000 0.020 0
#> SRR1201873 3 0.0972 0.939 0 0.000 0.964 0.008 0.028 0
#> SRR1201871 3 0.1663 0.918 0 0.000 0.912 0.000 0.088 0
#> SRR1201872 3 0.0972 0.939 0 0.000 0.964 0.008 0.028 0
#> SRR1201980 3 0.2448 0.889 0 0.000 0.884 0.064 0.052 0
#> SRR1201979 3 0.1814 0.904 0 0.000 0.900 0.000 0.100 0
#> SRR1201982 3 0.2384 0.892 0 0.000 0.888 0.064 0.048 0
#> SRR1201981 3 0.0713 0.942 0 0.000 0.972 0.000 0.028 0
#> SRR1201998 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1201996 3 0.0937 0.933 0 0.000 0.960 0.000 0.040 0
#> SRR1201997 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1202005 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1202006 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1202088 3 0.0146 0.946 0 0.000 0.996 0.000 0.004 0
#> SRR1202087 3 0.2003 0.893 0 0.000 0.884 0.000 0.116 0
#> SRR1202093 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1202092 3 0.1204 0.922 0 0.000 0.944 0.000 0.056 0
#> SRR1202288 3 0.1204 0.922 0 0.000 0.944 0.000 0.056 0
#> SRR1202289 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1202299 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1202298 3 0.1204 0.922 0 0.000 0.944 0.000 0.056 0
#> SRR1202303 4 0.0000 1.000 0 0.000 0.000 1.000 0.000 0
#> SRR1202372 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1202371 3 0.1204 0.922 0 0.000 0.944 0.000 0.056 0
#> SRR1202563 3 0.1204 0.926 0 0.000 0.944 0.000 0.056 0
#> SRR1202565 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1202564 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1202649 3 0.1141 0.927 0 0.000 0.948 0.000 0.052 0
#> SRR1202650 3 0.1141 0.935 0 0.000 0.948 0.000 0.052 0
#> SRR1202651 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1202843 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1202844 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1202845 3 0.1141 0.924 0 0.000 0.948 0.000 0.052 0
#> SRR1202847 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1202846 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1202945 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1202949 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1202977 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1202978 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1202979 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1202990 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1202999 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203005 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203006 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203007 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203009 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203008 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203010 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203011 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203025 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203026 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203027 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203061 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203089 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203125 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203128 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203129 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203130 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203132 3 0.2384 0.892 0 0.000 0.888 0.064 0.048 0
#> SRR1203131 3 0.1141 0.933 0 0.000 0.948 0.000 0.052 0
#> SRR1203133 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203138 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203760 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203761 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203770 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203771 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203772 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203773 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203774 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203775 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203800 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203801 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203802 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203803 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203804 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203805 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203806 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203807 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203808 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203811 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203812 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203813 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203814 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203815 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203816 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203817 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203818 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203819 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203822 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203823 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203824 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203825 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203826 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203827 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203828 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203829 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203830 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203831 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203832 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203833 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203834 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203835 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203836 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203837 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203838 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203839 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203842 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203843 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0
#> SRR1203845 3 0.0000 0.947 0 0.000 1.000 0.000 0.000 0
#> SRR1203844 3 0.1141 0.924 0 0.000 0.948 0.000 0.052 0
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["MAD", "kmeans"]
# you can also extract it by
# res = res_list["MAD:kmeans"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'MAD' method.
#> Subgroups are detected by 'kmeans' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 2.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.3830 0.618 0.618
#> 3 3 0.731 0.861 0.870 0.5999 0.768 0.624
#> 4 4 0.826 0.873 0.843 0.1403 0.850 0.617
#> 5 5 0.739 0.875 0.861 0.0558 0.958 0.845
#> 6 6 0.730 0.823 0.847 0.0430 1.000 1.000
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 2
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0 1 0 1
#> SRR1201590 2 0 1 0 1
#> SRR1201593 2 0 1 0 1
#> SRR1201592 2 0 1 0 1
#> SRR1201617 2 0 1 0 1
#> SRR1201616 2 0 1 0 1
#> SRR1201619 2 0 1 0 1
#> SRR1201618 2 0 1 0 1
#> SRR1201620 2 0 1 0 1
#> SRR1201621 2 0 1 0 1
#> SRR1201623 2 0 1 0 1
#> SRR1201622 2 0 1 0 1
#> SRR1201624 2 0 1 0 1
#> SRR1201625 2 0 1 0 1
#> SRR1201626 2 0 1 0 1
#> SRR1201627 2 0 1 0 1
#> SRR1201628 2 0 1 0 1
#> SRR1201629 2 0 1 0 1
#> SRR1201630 2 0 1 0 1
#> SRR1201631 2 0 1 0 1
#> SRR1201641 2 0 1 0 1
#> SRR1201640 2 0 1 0 1
#> SRR1201643 2 0 1 0 1
#> SRR1201644 2 0 1 0 1
#> SRR1201661 2 0 1 0 1
#> SRR1201662 2 0 1 0 1
#> SRR1201663 2 0 1 0 1
#> SRR1201664 2 0 1 0 1
#> SRR1201665 2 0 1 0 1
#> SRR1201666 2 0 1 0 1
#> SRR1201667 2 0 1 0 1
#> SRR1201668 2 0 1 0 1
#> SRR1201670 2 0 1 0 1
#> SRR1201669 2 0 1 0 1
#> SRR1201673 2 0 1 0 1
#> SRR1201672 2 0 1 0 1
#> SRR1201671 2 0 1 0 1
#> SRR1201677 2 0 1 0 1
#> SRR1201676 2 0 1 0 1
#> SRR1201675 2 0 1 0 1
#> SRR1201674 2 0 1 0 1
#> SRR1201678 2 0 1 0 1
#> SRR1201682 2 0 1 0 1
#> SRR1201683 2 0 1 0 1
#> SRR1201680 2 0 1 0 1
#> SRR1201681 2 0 1 0 1
#> SRR1201679 2 0 1 0 1
#> SRR1201686 2 0 1 0 1
#> SRR1201687 2 0 1 0 1
#> SRR1201688 2 0 1 0 1
#> SRR1201689 2 0 1 0 1
#> SRR1201685 2 0 1 0 1
#> SRR1201692 2 0 1 0 1
#> SRR1201691 2 0 1 0 1
#> SRR1201690 2 0 1 0 1
#> SRR1201696 2 0 1 0 1
#> SRR1201695 2 0 1 0 1
#> SRR1201694 2 0 1 0 1
#> SRR1201693 2 0 1 0 1
#> SRR1201697 2 0 1 0 1
#> SRR1201698 2 0 1 0 1
#> SRR1201700 2 0 1 0 1
#> SRR1201708 2 0 1 0 1
#> SRR1201707 2 0 1 0 1
#> SRR1201706 2 0 1 0 1
#> SRR1201702 2 0 1 0 1
#> SRR1201705 2 0 1 0 1
#> SRR1201701 2 0 1 0 1
#> SRR1201704 2 0 1 0 1
#> SRR1201703 2 0 1 0 1
#> SRR1201716 2 0 1 0 1
#> SRR1201715 2 0 1 0 1
#> SRR1201717 2 0 1 0 1
#> SRR1201712 2 0 1 0 1
#> SRR1201709 2 0 1 0 1
#> SRR1201711 2 0 1 0 1
#> SRR1201714 2 0 1 0 1
#> SRR1201713 2 0 1 0 1
#> SRR1201710 2 0 1 0 1
#> SRR1201719 2 0 1 0 1
#> SRR1201718 2 0 1 0 1
#> SRR1201721 2 0 1 0 1
#> SRR1201720 2 0 1 0 1
#> SRR1201723 2 0 1 0 1
#> SRR1201722 2 0 1 0 1
#> SRR1201725 2 0 1 0 1
#> SRR1201724 2 0 1 0 1
#> SRR1201726 2 0 1 0 1
#> SRR1201727 2 0 1 0 1
#> SRR1201731 2 0 1 0 1
#> SRR1201730 2 0 1 0 1
#> SRR1201734 2 0 1 0 1
#> SRR1201733 2 0 1 0 1
#> SRR1201736 2 0 1 0 1
#> SRR1201737 2 0 1 0 1
#> SRR1201739 2 0 1 0 1
#> SRR1201738 2 0 1 0 1
#> SRR1201742 2 0 1 0 1
#> SRR1201743 2 0 1 0 1
#> SRR1201745 2 0 1 0 1
#> SRR1201744 2 0 1 0 1
#> SRR1201749 2 0 1 0 1
#> SRR1201750 2 0 1 0 1
#> SRR1201752 2 0 1 0 1
#> SRR1201751 2 0 1 0 1
#> SRR1201754 2 0 1 0 1
#> SRR1201753 2 0 1 0 1
#> SRR1201758 2 0 1 0 1
#> SRR1201759 2 0 1 0 1
#> SRR1201760 2 0 1 0 1
#> SRR1201761 2 0 1 0 1
#> SRR1201763 2 0 1 0 1
#> SRR1201762 2 0 1 0 1
#> SRR1201764 2 0 1 0 1
#> SRR1201766 2 0 1 0 1
#> SRR1201768 2 0 1 0 1
#> SRR1201769 2 0 1 0 1
#> SRR1201767 2 0 1 0 1
#> SRR1201770 2 0 1 0 1
#> SRR1201771 2 0 1 0 1
#> SRR1201772 2 0 1 0 1
#> SRR1201773 2 0 1 0 1
#> SRR1201774 2 0 1 0 1
#> SRR1201786 2 0 1 0 1
#> SRR1201784 2 0 1 0 1
#> SRR1201785 2 0 1 0 1
#> SRR1201778 2 0 1 0 1
#> SRR1201779 2 0 1 0 1
#> SRR1201781 2 0 1 0 1
#> SRR1201780 2 0 1 0 1
#> SRR1201783 2 0 1 0 1
#> SRR1201782 2 0 1 0 1
#> SRR1201798 2 0 1 0 1
#> SRR1201797 2 0 1 0 1
#> SRR1201796 2 0 1 0 1
#> SRR1201795 2 0 1 0 1
#> SRR1201799 2 0 1 0 1
#> SRR1201794 2 0 1 0 1
#> SRR1201793 2 0 1 0 1
#> SRR1201792 2 0 1 0 1
#> SRR1201791 2 0 1 0 1
#> SRR1201807 2 0 1 0 1
#> SRR1201808 2 0 1 0 1
#> SRR1201803 2 0 1 0 1
#> SRR1201804 2 0 1 0 1
#> SRR1201805 2 0 1 0 1
#> SRR1201806 2 0 1 0 1
#> SRR1201801 2 0 1 0 1
#> SRR1201802 2 0 1 0 1
#> SRR1201800 2 0 1 0 1
#> SRR1201814 2 0 1 0 1
#> SRR1201816 2 0 1 0 1
#> SRR1201815 2 0 1 0 1
#> SRR1201819 2 0 1 0 1
#> SRR1201820 2 0 1 0 1
#> SRR1201813 2 0 1 0 1
#> SRR1201817 2 0 1 0 1
#> SRR1201818 2 0 1 0 1
#> SRR1201825 2 0 1 0 1
#> SRR1201827 2 0 1 0 1
#> SRR1201828 2 0 1 0 1
#> SRR1201826 2 0 1 0 1
#> SRR1201829 2 0 1 0 1
#> SRR1201830 2 0 1 0 1
#> SRR1201831 2 0 1 0 1
#> SRR1201832 2 0 1 0 1
#> SRR1201833 2 0 1 0 1
#> SRR1201865 2 0 1 0 1
#> SRR1201866 2 0 1 0 1
#> SRR1201867 2 0 1 0 1
#> SRR1201861 2 0 1 0 1
#> SRR1201862 2 0 1 0 1
#> SRR1201863 2 0 1 0 1
#> SRR1201859 2 0 1 0 1
#> SRR1201864 2 0 1 0 1
#> SRR1201860 2 0 1 0 1
#> SRR1201873 2 0 1 0 1
#> SRR1201871 2 0 1 0 1
#> SRR1201872 2 0 1 0 1
#> SRR1201980 2 0 1 0 1
#> SRR1201979 2 0 1 0 1
#> SRR1201982 2 0 1 0 1
#> SRR1201981 2 0 1 0 1
#> SRR1201998 2 0 1 0 1
#> SRR1201996 2 0 1 0 1
#> SRR1201997 2 0 1 0 1
#> SRR1202005 2 0 1 0 1
#> SRR1202006 2 0 1 0 1
#> SRR1202088 2 0 1 0 1
#> SRR1202087 2 0 1 0 1
#> SRR1202093 2 0 1 0 1
#> SRR1202092 2 0 1 0 1
#> SRR1202288 2 0 1 0 1
#> SRR1202289 2 0 1 0 1
#> SRR1202299 2 0 1 0 1
#> SRR1202298 2 0 1 0 1
#> SRR1202303 2 0 1 0 1
#> SRR1202372 2 0 1 0 1
#> SRR1202371 2 0 1 0 1
#> SRR1202563 2 0 1 0 1
#> SRR1202565 2 0 1 0 1
#> SRR1202564 2 0 1 0 1
#> SRR1202649 2 0 1 0 1
#> SRR1202650 2 0 1 0 1
#> SRR1202651 2 0 1 0 1
#> SRR1202843 1 0 1 1 0
#> SRR1202844 1 0 1 1 0
#> SRR1202845 2 0 1 0 1
#> SRR1202847 2 0 1 0 1
#> SRR1202846 2 0 1 0 1
#> SRR1202945 1 0 1 1 0
#> SRR1202949 1 0 1 1 0
#> SRR1202977 1 0 1 1 0
#> SRR1202978 1 0 1 1 0
#> SRR1202979 1 0 1 1 0
#> SRR1202990 1 0 1 1 0
#> SRR1202999 1 0 1 1 0
#> SRR1203005 1 0 1 1 0
#> SRR1203006 1 0 1 1 0
#> SRR1203007 1 0 1 1 0
#> SRR1203009 1 0 1 1 0
#> SRR1203008 1 0 1 1 0
#> SRR1203010 1 0 1 1 0
#> SRR1203011 1 0 1 1 0
#> SRR1203025 1 0 1 1 0
#> SRR1203026 1 0 1 1 0
#> SRR1203027 1 0 1 1 0
#> SRR1203061 1 0 1 1 0
#> SRR1203089 1 0 1 1 0
#> SRR1203125 1 0 1 1 0
#> SRR1203128 1 0 1 1 0
#> SRR1203129 1 0 1 1 0
#> SRR1203130 1 0 1 1 0
#> SRR1203132 2 0 1 0 1
#> SRR1203131 2 0 1 0 1
#> SRR1203133 1 0 1 1 0
#> SRR1203138 1 0 1 1 0
#> SRR1203760 1 0 1 1 0
#> SRR1203761 1 0 1 1 0
#> SRR1203770 1 0 1 1 0
#> SRR1203771 1 0 1 1 0
#> SRR1203772 1 0 1 1 0
#> SRR1203773 1 0 1 1 0
#> SRR1203774 1 0 1 1 0
#> SRR1203775 1 0 1 1 0
#> SRR1203800 1 0 1 1 0
#> SRR1203801 1 0 1 1 0
#> SRR1203802 1 0 1 1 0
#> SRR1203803 1 0 1 1 0
#> SRR1203804 1 0 1 1 0
#> SRR1203805 1 0 1 1 0
#> SRR1203806 1 0 1 1 0
#> SRR1203807 1 0 1 1 0
#> SRR1203808 1 0 1 1 0
#> SRR1203811 1 0 1 1 0
#> SRR1203812 1 0 1 1 0
#> SRR1203813 1 0 1 1 0
#> SRR1203814 1 0 1 1 0
#> SRR1203815 1 0 1 1 0
#> SRR1203816 1 0 1 1 0
#> SRR1203817 1 0 1 1 0
#> SRR1203818 1 0 1 1 0
#> SRR1203819 1 0 1 1 0
#> SRR1203822 1 0 1 1 0
#> SRR1203823 1 0 1 1 0
#> SRR1203824 1 0 1 1 0
#> SRR1203825 1 0 1 1 0
#> SRR1203826 1 0 1 1 0
#> SRR1203827 1 0 1 1 0
#> SRR1203828 1 0 1 1 0
#> SRR1203829 1 0 1 1 0
#> SRR1203830 1 0 1 1 0
#> SRR1203831 1 0 1 1 0
#> SRR1203832 1 0 1 1 0
#> SRR1203833 1 0 1 1 0
#> SRR1203834 1 0 1 1 0
#> SRR1203835 1 0 1 1 0
#> SRR1203836 1 0 1 1 0
#> SRR1203837 1 0 1 1 0
#> SRR1203838 1 0 1 1 0
#> SRR1203839 1 0 1 1 0
#> SRR1203842 1 0 1 1 0
#> SRR1203843 1 0 1 1 0
#> SRR1203845 2 0 1 0 1
#> SRR1203844 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201590 3 0.2261 0.982 0.000 0.068 0.932
#> SRR1201593 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201592 3 0.2261 0.982 0.000 0.068 0.932
#> SRR1201617 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201616 3 0.2261 0.982 0.000 0.068 0.932
#> SRR1201619 2 0.5216 0.723 0.000 0.740 0.260
#> SRR1201618 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1201620 3 0.2261 0.982 0.000 0.068 0.932
#> SRR1201621 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201623 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201622 3 0.2261 0.983 0.000 0.068 0.932
#> SRR1201624 3 0.2356 0.981 0.000 0.072 0.928
#> SRR1201625 2 0.1289 0.788 0.000 0.968 0.032
#> SRR1201626 3 0.2356 0.981 0.000 0.072 0.928
#> SRR1201627 2 0.1289 0.788 0.000 0.968 0.032
#> SRR1201628 3 0.2261 0.983 0.000 0.068 0.932
#> SRR1201629 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201630 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1201631 2 0.5058 0.732 0.000 0.756 0.244
#> SRR1201641 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201640 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1201643 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1201644 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201661 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1201662 2 0.0424 0.812 0.000 0.992 0.008
#> SRR1201663 3 0.2356 0.981 0.000 0.072 0.928
#> SRR1201664 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201665 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1201666 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201667 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201668 3 0.2356 0.981 0.000 0.072 0.928
#> SRR1201670 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201669 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201673 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201672 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201671 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1201677 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201676 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201675 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201674 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201678 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201682 2 0.0424 0.812 0.000 0.992 0.008
#> SRR1201683 2 0.0424 0.812 0.000 0.992 0.008
#> SRR1201680 2 0.0424 0.812 0.000 0.992 0.008
#> SRR1201681 2 0.0424 0.812 0.000 0.992 0.008
#> SRR1201679 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1201686 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201687 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201688 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201689 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201685 3 0.2356 0.981 0.000 0.072 0.928
#> SRR1201692 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201691 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201690 3 0.2356 0.981 0.000 0.072 0.928
#> SRR1201696 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201695 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201694 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201693 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201697 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201698 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201700 3 0.2711 0.961 0.000 0.088 0.912
#> SRR1201708 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201707 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201706 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201702 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201705 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201701 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201704 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201703 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201716 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201715 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201717 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201712 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201709 3 0.3192 0.928 0.000 0.112 0.888
#> SRR1201711 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201714 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201713 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201710 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201719 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201718 3 0.6154 0.105 0.000 0.408 0.592
#> SRR1201721 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201720 3 0.2356 0.981 0.000 0.072 0.928
#> SRR1201723 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201722 3 0.2448 0.976 0.000 0.076 0.924
#> SRR1201725 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201724 3 0.3412 0.902 0.000 0.124 0.876
#> SRR1201726 3 0.2356 0.981 0.000 0.072 0.928
#> SRR1201727 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201731 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201730 3 0.2356 0.981 0.000 0.072 0.928
#> SRR1201734 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201733 3 0.2261 0.982 0.000 0.068 0.932
#> SRR1201736 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1201737 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201739 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201738 3 0.2261 0.982 0.000 0.068 0.932
#> SRR1201742 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1201743 2 0.0592 0.812 0.000 0.988 0.012
#> SRR1201745 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201744 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1201749 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1201750 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201752 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201751 3 0.2356 0.981 0.000 0.072 0.928
#> SRR1201754 2 0.4931 0.738 0.000 0.768 0.232
#> SRR1201753 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1201758 3 0.2356 0.981 0.000 0.072 0.928
#> SRR1201759 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201760 3 0.2261 0.983 0.000 0.068 0.932
#> SRR1201761 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201763 2 0.1289 0.788 0.000 0.968 0.032
#> SRR1201762 3 0.2356 0.981 0.000 0.072 0.928
#> SRR1201764 3 0.2261 0.983 0.000 0.068 0.932
#> SRR1201766 3 0.2261 0.982 0.000 0.068 0.932
#> SRR1201768 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201769 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201767 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201770 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201771 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201772 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201773 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201774 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201786 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201784 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201785 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201778 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1201779 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201781 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201780 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201783 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201782 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201798 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201797 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201796 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201795 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201799 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201794 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201793 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201792 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201791 3 0.2261 0.982 0.000 0.068 0.932
#> SRR1201807 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201808 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201803 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201804 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201805 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201806 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201801 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201802 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201800 3 0.2261 0.982 0.000 0.068 0.932
#> SRR1201814 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201816 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201815 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201819 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201820 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201813 3 0.2261 0.982 0.000 0.068 0.932
#> SRR1201817 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201818 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1201825 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1201827 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201828 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201826 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1201829 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201830 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201831 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201832 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201833 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201865 2 0.3412 0.784 0.000 0.876 0.124
#> SRR1201866 2 0.3412 0.784 0.000 0.876 0.124
#> SRR1201867 2 0.3412 0.784 0.000 0.876 0.124
#> SRR1201861 2 0.3412 0.784 0.000 0.876 0.124
#> SRR1201862 2 0.3412 0.784 0.000 0.876 0.124
#> SRR1201863 2 0.3412 0.784 0.000 0.876 0.124
#> SRR1201859 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1201864 2 0.3412 0.784 0.000 0.876 0.124
#> SRR1201860 2 0.3412 0.784 0.000 0.876 0.124
#> SRR1201873 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201871 3 0.2261 0.983 0.000 0.068 0.932
#> SRR1201872 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201980 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1201979 3 0.2356 0.981 0.000 0.072 0.928
#> SRR1201982 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201981 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1201998 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1201996 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1201997 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1202005 2 0.5926 0.650 0.000 0.644 0.356
#> SRR1202006 2 0.4796 0.744 0.000 0.780 0.220
#> SRR1202088 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1202087 3 0.2796 0.960 0.000 0.092 0.908
#> SRR1202093 2 0.5016 0.733 0.000 0.760 0.240
#> SRR1202092 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1202288 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1202289 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1202299 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1202298 3 0.2261 0.982 0.000 0.068 0.932
#> SRR1202303 2 0.1289 0.788 0.000 0.968 0.032
#> SRR1202372 2 0.5859 0.670 0.000 0.656 0.344
#> SRR1202371 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1202563 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1202565 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1202564 2 0.0000 0.813 0.000 1.000 0.000
#> SRR1202649 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1202650 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1202651 2 0.4750 0.746 0.000 0.784 0.216
#> SRR1202843 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1202844 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1202845 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1202847 2 0.5706 0.686 0.000 0.680 0.320
#> SRR1202846 2 0.5706 0.686 0.000 0.680 0.320
#> SRR1202945 1 0.0237 0.991 0.996 0.000 0.004
#> SRR1202949 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1202977 1 0.1163 0.987 0.972 0.000 0.028
#> SRR1202978 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1202979 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1202990 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1202999 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203005 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203006 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203007 1 0.0892 0.989 0.980 0.000 0.020
#> SRR1203009 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203008 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203010 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203011 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203025 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203026 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203027 1 0.0237 0.991 0.996 0.000 0.004
#> SRR1203061 1 0.0237 0.991 0.996 0.000 0.004
#> SRR1203089 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203125 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203128 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203129 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203130 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203132 2 0.0237 0.813 0.000 0.996 0.004
#> SRR1203131 3 0.2165 0.984 0.000 0.064 0.936
#> SRR1203133 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203138 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203760 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203761 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203770 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203771 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203772 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203773 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203774 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203775 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203800 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203801 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203802 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203803 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203804 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203805 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203806 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203807 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203808 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203811 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203812 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203813 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203814 1 0.0237 0.991 0.996 0.000 0.004
#> SRR1203815 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203816 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203817 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203818 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203819 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203822 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203823 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203824 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203825 1 0.0424 0.990 0.992 0.000 0.008
#> SRR1203826 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203827 1 0.1163 0.987 0.972 0.000 0.028
#> SRR1203828 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203829 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203830 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203831 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203832 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203833 1 0.1031 0.988 0.976 0.000 0.024
#> SRR1203834 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203835 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203836 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203837 1 0.1289 0.987 0.968 0.000 0.032
#> SRR1203838 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203839 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203842 1 0.1163 0.987 0.972 0.000 0.028
#> SRR1203843 1 0.0000 0.991 1.000 0.000 0.000
#> SRR1203845 2 0.5216 0.723 0.000 0.740 0.260
#> SRR1203844 3 0.2261 0.982 0.000 0.068 0.932
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201590 4 0.3333 0.9304 0.000 0.088 0.040 0.872
#> SRR1201593 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201592 4 0.4939 0.8099 0.000 0.220 0.040 0.740
#> SRR1201617 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201616 4 0.4423 0.8684 0.000 0.168 0.040 0.792
#> SRR1201619 2 0.0592 0.8472 0.000 0.984 0.016 0.000
#> SRR1201618 4 0.3128 0.9346 0.000 0.076 0.040 0.884
#> SRR1201620 4 0.3821 0.9110 0.000 0.120 0.040 0.840
#> SRR1201621 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201623 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201622 4 0.1798 0.9312 0.000 0.040 0.016 0.944
#> SRR1201624 4 0.4826 0.7868 0.000 0.020 0.264 0.716
#> SRR1201625 3 0.5403 0.9231 0.000 0.348 0.628 0.024
#> SRR1201626 4 0.4826 0.7868 0.000 0.020 0.264 0.716
#> SRR1201627 3 0.5403 0.9231 0.000 0.348 0.628 0.024
#> SRR1201628 4 0.2222 0.9375 0.000 0.060 0.016 0.924
#> SRR1201629 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201630 4 0.1940 0.9368 0.000 0.076 0.000 0.924
#> SRR1201631 2 0.2530 0.7035 0.000 0.888 0.112 0.000
#> SRR1201641 3 0.4955 0.8748 0.000 0.444 0.556 0.000
#> SRR1201640 4 0.2216 0.9338 0.000 0.092 0.000 0.908
#> SRR1201643 4 0.2124 0.9379 0.000 0.068 0.008 0.924
#> SRR1201644 3 0.4877 0.9442 0.000 0.408 0.592 0.000
#> SRR1201661 4 0.2149 0.9350 0.000 0.088 0.000 0.912
#> SRR1201662 2 0.2704 0.6795 0.000 0.876 0.124 0.000
#> SRR1201663 4 0.3107 0.9107 0.000 0.036 0.080 0.884
#> SRR1201664 3 0.4905 0.9681 0.000 0.364 0.632 0.004
#> SRR1201665 4 0.3128 0.9346 0.000 0.076 0.040 0.884
#> SRR1201666 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201667 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201668 4 0.3013 0.9082 0.000 0.032 0.080 0.888
#> SRR1201670 3 0.4746 0.9736 0.000 0.368 0.632 0.000
#> SRR1201669 3 0.4746 0.9736 0.000 0.368 0.632 0.000
#> SRR1201673 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201672 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201671 4 0.2222 0.9375 0.000 0.060 0.016 0.924
#> SRR1201677 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201676 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201675 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201674 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201678 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201682 2 0.1557 0.7908 0.000 0.944 0.056 0.000
#> SRR1201683 2 0.1557 0.7908 0.000 0.944 0.056 0.000
#> SRR1201680 2 0.1557 0.7908 0.000 0.944 0.056 0.000
#> SRR1201681 2 0.1557 0.7908 0.000 0.944 0.056 0.000
#> SRR1201679 4 0.3587 0.9218 0.000 0.104 0.040 0.856
#> SRR1201686 3 0.4746 0.9736 0.000 0.368 0.632 0.000
#> SRR1201687 3 0.4746 0.9736 0.000 0.368 0.632 0.000
#> SRR1201688 3 0.4746 0.9736 0.000 0.368 0.632 0.000
#> SRR1201689 3 0.4746 0.9736 0.000 0.368 0.632 0.000
#> SRR1201685 4 0.4797 0.7895 0.000 0.020 0.260 0.720
#> SRR1201692 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201691 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201690 4 0.2256 0.9365 0.000 0.056 0.020 0.924
#> SRR1201696 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201695 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201694 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201693 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201697 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201698 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201700 4 0.2411 0.9274 0.000 0.040 0.040 0.920
#> SRR1201708 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201707 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201706 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201702 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201705 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201701 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201704 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201703 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201716 3 0.4776 0.9809 0.000 0.376 0.624 0.000
#> SRR1201715 3 0.4776 0.9809 0.000 0.376 0.624 0.000
#> SRR1201717 3 0.4776 0.9809 0.000 0.376 0.624 0.000
#> SRR1201712 3 0.4776 0.9809 0.000 0.376 0.624 0.000
#> SRR1201709 4 0.2313 0.9229 0.000 0.032 0.044 0.924
#> SRR1201711 3 0.4776 0.9809 0.000 0.376 0.624 0.000
#> SRR1201714 3 0.4776 0.9809 0.000 0.376 0.624 0.000
#> SRR1201713 3 0.4776 0.9809 0.000 0.376 0.624 0.000
#> SRR1201710 3 0.4776 0.9809 0.000 0.376 0.624 0.000
#> SRR1201719 3 0.4855 0.9567 0.000 0.400 0.600 0.000
#> SRR1201718 4 0.4539 0.7308 0.000 0.272 0.008 0.720
#> SRR1201721 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201720 4 0.2256 0.9364 0.000 0.056 0.020 0.924
#> SRR1201723 3 0.4761 0.9777 0.000 0.372 0.628 0.000
#> SRR1201722 4 0.3149 0.9056 0.000 0.032 0.088 0.880
#> SRR1201725 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201724 4 0.3257 0.8913 0.000 0.152 0.004 0.844
#> SRR1201726 4 0.2224 0.9293 0.000 0.040 0.032 0.928
#> SRR1201727 3 0.4776 0.9809 0.000 0.376 0.624 0.000
#> SRR1201731 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201730 4 0.2313 0.9306 0.000 0.044 0.032 0.924
#> SRR1201734 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201733 4 0.3333 0.9304 0.000 0.088 0.040 0.872
#> SRR1201736 4 0.3128 0.9346 0.000 0.076 0.040 0.884
#> SRR1201737 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201739 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201738 4 0.4939 0.8105 0.000 0.220 0.040 0.740
#> SRR1201742 4 0.3128 0.9346 0.000 0.076 0.040 0.884
#> SRR1201743 2 0.1118 0.8218 0.000 0.964 0.036 0.000
#> SRR1201745 2 0.0804 0.8532 0.000 0.980 0.012 0.008
#> SRR1201744 4 0.3128 0.9346 0.000 0.076 0.040 0.884
#> SRR1201749 4 0.3128 0.9346 0.000 0.076 0.040 0.884
#> SRR1201750 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201752 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201751 4 0.2222 0.9375 0.000 0.060 0.016 0.924
#> SRR1201754 2 0.0592 0.8472 0.000 0.984 0.016 0.000
#> SRR1201753 4 0.3399 0.9286 0.000 0.092 0.040 0.868
#> SRR1201758 4 0.4826 0.7868 0.000 0.020 0.264 0.716
#> SRR1201759 3 0.4655 0.8845 0.000 0.312 0.684 0.004
#> SRR1201760 4 0.2222 0.9375 0.000 0.060 0.016 0.924
#> SRR1201761 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201763 3 0.5403 0.9231 0.000 0.348 0.628 0.024
#> SRR1201762 4 0.4826 0.7868 0.000 0.020 0.264 0.716
#> SRR1201764 4 0.2411 0.9269 0.000 0.040 0.040 0.920
#> SRR1201766 4 0.4285 0.8805 0.000 0.156 0.040 0.804
#> SRR1201768 2 0.0336 0.8665 0.000 0.992 0.000 0.008
#> SRR1201769 2 0.0336 0.8665 0.000 0.992 0.000 0.008
#> SRR1201767 2 0.0336 0.8665 0.000 0.992 0.000 0.008
#> SRR1201770 2 0.0336 0.8665 0.000 0.992 0.000 0.008
#> SRR1201771 2 0.0336 0.8665 0.000 0.992 0.000 0.008
#> SRR1201772 2 0.0336 0.8665 0.000 0.992 0.000 0.008
#> SRR1201773 2 0.0336 0.8665 0.000 0.992 0.000 0.008
#> SRR1201774 2 0.0336 0.8665 0.000 0.992 0.000 0.008
#> SRR1201786 2 0.0336 0.8665 0.000 0.992 0.000 0.008
#> SRR1201784 2 0.0336 0.8665 0.000 0.992 0.000 0.008
#> SRR1201785 2 0.0336 0.8665 0.000 0.992 0.000 0.008
#> SRR1201778 4 0.3128 0.9346 0.000 0.076 0.040 0.884
#> SRR1201779 2 0.0336 0.8665 0.000 0.992 0.000 0.008
#> SRR1201781 2 0.0336 0.8665 0.000 0.992 0.000 0.008
#> SRR1201780 2 0.0336 0.8665 0.000 0.992 0.000 0.008
#> SRR1201783 2 0.0336 0.8665 0.000 0.992 0.000 0.008
#> SRR1201782 2 0.0336 0.8665 0.000 0.992 0.000 0.008
#> SRR1201798 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201797 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201796 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201795 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201799 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201794 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201793 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201792 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201791 2 0.5778 0.0517 0.000 0.604 0.040 0.356
#> SRR1201807 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201808 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201803 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201804 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201805 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201806 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201801 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201802 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201800 2 0.6005 -0.2620 0.000 0.500 0.040 0.460
#> SRR1201814 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201816 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201815 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201819 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201820 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201813 2 0.5713 0.1001 0.000 0.620 0.040 0.340
#> SRR1201817 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201818 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1201825 4 0.1798 0.9312 0.000 0.040 0.016 0.944
#> SRR1201827 3 0.5099 0.9773 0.000 0.380 0.612 0.008
#> SRR1201828 3 0.5099 0.9773 0.000 0.380 0.612 0.008
#> SRR1201826 4 0.2222 0.9375 0.000 0.060 0.016 0.924
#> SRR1201829 3 0.5099 0.9773 0.000 0.380 0.612 0.008
#> SRR1201830 3 0.5099 0.9773 0.000 0.380 0.612 0.008
#> SRR1201831 3 0.5099 0.9773 0.000 0.380 0.612 0.008
#> SRR1201832 3 0.5099 0.9773 0.000 0.380 0.612 0.008
#> SRR1201833 3 0.5099 0.9773 0.000 0.380 0.612 0.008
#> SRR1201865 2 0.6139 -0.5074 0.000 0.544 0.404 0.052
#> SRR1201866 2 0.6139 -0.5074 0.000 0.544 0.404 0.052
#> SRR1201867 2 0.6139 -0.5074 0.000 0.544 0.404 0.052
#> SRR1201861 2 0.6139 -0.5074 0.000 0.544 0.404 0.052
#> SRR1201862 2 0.6139 -0.5074 0.000 0.544 0.404 0.052
#> SRR1201863 2 0.6139 -0.5074 0.000 0.544 0.404 0.052
#> SRR1201859 4 0.1557 0.9360 0.000 0.056 0.000 0.944
#> SRR1201864 2 0.6139 -0.5074 0.000 0.544 0.404 0.052
#> SRR1201860 2 0.6139 -0.5074 0.000 0.544 0.404 0.052
#> SRR1201873 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201871 4 0.1798 0.9312 0.000 0.040 0.016 0.944
#> SRR1201872 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201980 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201979 4 0.2256 0.9365 0.000 0.056 0.020 0.924
#> SRR1201982 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1201981 4 0.2222 0.9375 0.000 0.060 0.016 0.924
#> SRR1201998 3 0.4804 0.9786 0.000 0.384 0.616 0.000
#> SRR1201996 4 0.2216 0.9338 0.000 0.092 0.000 0.908
#> SRR1201997 3 0.4877 0.9442 0.000 0.408 0.592 0.000
#> SRR1202005 2 0.2197 0.7825 0.000 0.916 0.004 0.080
#> SRR1202006 2 0.1557 0.8015 0.000 0.944 0.056 0.000
#> SRR1202088 3 0.4994 0.7957 0.000 0.480 0.520 0.000
#> SRR1202087 4 0.3612 0.9182 0.000 0.100 0.044 0.856
#> SRR1202093 2 0.0188 0.8611 0.000 0.996 0.004 0.000
#> SRR1202092 4 0.3399 0.9298 0.000 0.092 0.040 0.868
#> SRR1202288 4 0.3128 0.9346 0.000 0.076 0.040 0.884
#> SRR1202289 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1202299 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1202298 2 0.5793 0.0407 0.000 0.600 0.040 0.360
#> SRR1202303 3 0.5403 0.9231 0.000 0.348 0.628 0.024
#> SRR1202372 2 0.0188 0.8687 0.000 0.996 0.000 0.004
#> SRR1202371 4 0.3128 0.9346 0.000 0.076 0.040 0.884
#> SRR1202563 4 0.1743 0.9363 0.000 0.056 0.004 0.940
#> SRR1202565 3 0.4877 0.9442 0.000 0.408 0.592 0.000
#> SRR1202564 3 0.4877 0.9442 0.000 0.408 0.592 0.000
#> SRR1202649 4 0.1743 0.9363 0.000 0.056 0.004 0.940
#> SRR1202650 4 0.2125 0.9370 0.000 0.076 0.004 0.920
#> SRR1202651 2 0.1637 0.7954 0.000 0.940 0.060 0.000
#> SRR1202843 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1202844 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1202845 4 0.1940 0.9368 0.000 0.076 0.000 0.924
#> SRR1202847 2 0.1302 0.8184 0.000 0.956 0.044 0.000
#> SRR1202846 2 0.1302 0.8184 0.000 0.956 0.044 0.000
#> SRR1202945 1 0.0188 0.9762 0.996 0.000 0.004 0.000
#> SRR1202949 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1202977 1 0.1545 0.9715 0.952 0.000 0.040 0.008
#> SRR1202978 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1202979 1 0.0707 0.9752 0.980 0.000 0.020 0.000
#> SRR1202990 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1202999 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1203005 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203006 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203007 1 0.1584 0.9715 0.952 0.000 0.036 0.012
#> SRR1203009 1 0.1854 0.9691 0.940 0.000 0.048 0.012
#> SRR1203008 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1203010 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1203011 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1203025 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1203026 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1203027 1 0.0779 0.9752 0.980 0.000 0.016 0.004
#> SRR1203061 1 0.0336 0.9762 0.992 0.000 0.008 0.000
#> SRR1203089 1 0.0000 0.9762 1.000 0.000 0.000 0.000
#> SRR1203125 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203128 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203129 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203130 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203132 3 0.4790 0.9824 0.000 0.380 0.620 0.000
#> SRR1203131 4 0.2222 0.9375 0.000 0.060 0.016 0.924
#> SRR1203133 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203138 1 0.1854 0.9689 0.940 0.000 0.048 0.012
#> SRR1203760 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203761 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203770 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203771 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1203772 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1203773 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203774 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1203775 1 0.1854 0.9689 0.940 0.000 0.048 0.012
#> SRR1203800 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1203801 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203802 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203803 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203804 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1203805 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1203806 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203807 1 0.0188 0.9762 0.996 0.000 0.004 0.000
#> SRR1203808 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203811 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203812 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1203813 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1203814 1 0.0000 0.9762 1.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9762 1.000 0.000 0.000 0.000
#> SRR1203816 1 0.0592 0.9763 0.984 0.000 0.016 0.000
#> SRR1203817 1 0.0188 0.9761 0.996 0.000 0.004 0.000
#> SRR1203818 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1203819 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203822 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203823 1 0.0817 0.9763 0.976 0.000 0.024 0.000
#> SRR1203824 1 0.0188 0.9762 0.996 0.000 0.004 0.000
#> SRR1203825 1 0.1151 0.9738 0.968 0.000 0.024 0.008
#> SRR1203826 1 0.1854 0.9689 0.940 0.000 0.048 0.012
#> SRR1203827 1 0.3464 0.9226 0.860 0.000 0.108 0.032
#> SRR1203828 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1203829 1 0.0524 0.9763 0.988 0.000 0.008 0.004
#> SRR1203830 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203831 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1203832 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1203833 1 0.1767 0.9699 0.944 0.000 0.044 0.012
#> SRR1203834 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203835 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203836 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203837 1 0.1938 0.9682 0.936 0.000 0.052 0.012
#> SRR1203838 1 0.0188 0.9761 0.996 0.000 0.004 0.000
#> SRR1203839 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203842 1 0.3367 0.9237 0.864 0.000 0.108 0.028
#> SRR1203843 1 0.0336 0.9759 0.992 0.000 0.008 0.000
#> SRR1203845 2 0.0817 0.8421 0.000 0.976 0.024 0.000
#> SRR1203844 4 0.4088 0.8041 0.000 0.232 0.004 0.764
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.4169 0.9335 0.000 0.732 0.240 0.028 0.000
#> SRR1201590 5 0.2989 0.8046 0.000 0.072 0.000 0.060 0.868
#> SRR1201593 2 0.4169 0.9335 0.000 0.732 0.240 0.028 0.000
#> SRR1201592 5 0.4390 0.6447 0.000 0.156 0.000 0.084 0.760
#> SRR1201617 2 0.4169 0.9335 0.000 0.732 0.240 0.028 0.000
#> SRR1201616 5 0.3966 0.7083 0.000 0.132 0.000 0.072 0.796
#> SRR1201619 2 0.4325 0.9215 0.000 0.724 0.240 0.036 0.000
#> SRR1201618 5 0.2504 0.8208 0.000 0.040 0.000 0.064 0.896
#> SRR1201620 5 0.3454 0.7711 0.000 0.100 0.000 0.064 0.836
#> SRR1201621 2 0.3906 0.9300 0.000 0.744 0.240 0.016 0.000
#> SRR1201623 3 0.1412 0.9130 0.000 0.008 0.952 0.036 0.004
#> SRR1201622 5 0.1331 0.8266 0.000 0.000 0.008 0.040 0.952
#> SRR1201624 4 0.4491 0.9897 0.000 0.004 0.008 0.624 0.364
#> SRR1201625 3 0.3380 0.8307 0.000 0.028 0.840 0.124 0.008
#> SRR1201626 4 0.4974 0.9866 0.000 0.024 0.008 0.604 0.364
#> SRR1201627 3 0.3380 0.8307 0.000 0.028 0.840 0.124 0.008
#> SRR1201628 5 0.0992 0.8346 0.000 0.000 0.008 0.024 0.968
#> SRR1201629 3 0.0865 0.9143 0.000 0.004 0.972 0.024 0.000
#> SRR1201630 5 0.0613 0.8423 0.000 0.004 0.004 0.008 0.984
#> SRR1201631 2 0.5499 0.6377 0.000 0.532 0.408 0.056 0.004
#> SRR1201641 3 0.3437 0.7813 0.000 0.120 0.832 0.048 0.000
#> SRR1201640 5 0.1243 0.8368 0.000 0.008 0.004 0.028 0.960
#> SRR1201643 5 0.1116 0.8365 0.000 0.004 0.004 0.028 0.964
#> SRR1201644 3 0.3315 0.8234 0.000 0.084 0.856 0.052 0.008
#> SRR1201661 5 0.1560 0.8345 0.000 0.020 0.004 0.028 0.948
#> SRR1201662 2 0.5393 0.5658 0.000 0.504 0.440 0.056 0.000
#> SRR1201663 5 0.2674 0.7205 0.000 0.000 0.012 0.120 0.868
#> SRR1201664 3 0.1914 0.8944 0.000 0.000 0.924 0.060 0.016
#> SRR1201665 5 0.2504 0.8208 0.000 0.040 0.000 0.064 0.896
#> SRR1201666 2 0.4398 0.9324 0.000 0.720 0.240 0.040 0.000
#> SRR1201667 2 0.4398 0.9324 0.000 0.720 0.240 0.040 0.000
#> SRR1201668 5 0.3239 0.7231 0.000 0.004 0.012 0.156 0.828
#> SRR1201670 3 0.2017 0.8944 0.000 0.000 0.912 0.080 0.008
#> SRR1201669 3 0.2017 0.8944 0.000 0.000 0.912 0.080 0.008
#> SRR1201673 3 0.1469 0.9112 0.000 0.016 0.948 0.036 0.000
#> SRR1201672 3 0.1469 0.9112 0.000 0.016 0.948 0.036 0.000
#> SRR1201671 5 0.0898 0.8439 0.000 0.000 0.008 0.020 0.972
#> SRR1201677 3 0.1469 0.9112 0.000 0.016 0.948 0.036 0.000
#> SRR1201676 3 0.1469 0.9112 0.000 0.016 0.948 0.036 0.000
#> SRR1201675 3 0.1469 0.9112 0.000 0.016 0.948 0.036 0.000
#> SRR1201674 3 0.1469 0.9112 0.000 0.016 0.948 0.036 0.000
#> SRR1201678 3 0.1469 0.9112 0.000 0.016 0.948 0.036 0.000
#> SRR1201682 2 0.4668 0.8917 0.000 0.684 0.272 0.044 0.000
#> SRR1201683 2 0.4668 0.8917 0.000 0.684 0.272 0.044 0.000
#> SRR1201680 2 0.4668 0.8917 0.000 0.684 0.272 0.044 0.000
#> SRR1201681 2 0.4668 0.8917 0.000 0.684 0.272 0.044 0.000
#> SRR1201679 5 0.2983 0.8043 0.000 0.076 0.000 0.056 0.868
#> SRR1201686 3 0.2193 0.8884 0.000 0.000 0.900 0.092 0.008
#> SRR1201687 3 0.2193 0.8884 0.000 0.000 0.900 0.092 0.008
#> SRR1201688 3 0.2193 0.8884 0.000 0.000 0.900 0.092 0.008
#> SRR1201689 3 0.2193 0.8884 0.000 0.000 0.900 0.092 0.008
#> SRR1201685 4 0.4354 0.9861 0.000 0.000 0.008 0.624 0.368
#> SRR1201692 3 0.0162 0.9176 0.000 0.004 0.996 0.000 0.000
#> SRR1201691 3 0.0162 0.9176 0.000 0.004 0.996 0.000 0.000
#> SRR1201690 5 0.0992 0.8346 0.000 0.000 0.008 0.024 0.968
#> SRR1201696 3 0.0162 0.9176 0.000 0.004 0.996 0.000 0.000
#> SRR1201695 3 0.0162 0.9176 0.000 0.004 0.996 0.000 0.000
#> SRR1201694 3 0.0162 0.9176 0.000 0.004 0.996 0.000 0.000
#> SRR1201693 3 0.0162 0.9176 0.000 0.004 0.996 0.000 0.000
#> SRR1201697 3 0.0162 0.9176 0.000 0.004 0.996 0.000 0.000
#> SRR1201698 3 0.0162 0.9176 0.000 0.004 0.996 0.000 0.000
#> SRR1201700 5 0.1444 0.8259 0.000 0.000 0.012 0.040 0.948
#> SRR1201708 3 0.0324 0.9179 0.000 0.004 0.992 0.004 0.000
#> SRR1201707 3 0.0324 0.9179 0.000 0.004 0.992 0.004 0.000
#> SRR1201706 3 0.0324 0.9179 0.000 0.004 0.992 0.004 0.000
#> SRR1201702 3 0.0324 0.9179 0.000 0.004 0.992 0.004 0.000
#> SRR1201705 3 0.0324 0.9179 0.000 0.004 0.992 0.004 0.000
#> SRR1201701 3 0.0324 0.9179 0.000 0.004 0.992 0.004 0.000
#> SRR1201704 3 0.0324 0.9179 0.000 0.004 0.992 0.004 0.000
#> SRR1201703 3 0.0324 0.9179 0.000 0.004 0.992 0.004 0.000
#> SRR1201716 3 0.0880 0.9142 0.000 0.000 0.968 0.032 0.000
#> SRR1201715 3 0.0880 0.9142 0.000 0.000 0.968 0.032 0.000
#> SRR1201717 3 0.0880 0.9142 0.000 0.000 0.968 0.032 0.000
#> SRR1201712 3 0.0880 0.9142 0.000 0.000 0.968 0.032 0.000
#> SRR1201709 5 0.1942 0.8011 0.000 0.000 0.012 0.068 0.920
#> SRR1201711 3 0.0880 0.9142 0.000 0.000 0.968 0.032 0.000
#> SRR1201714 3 0.0880 0.9142 0.000 0.000 0.968 0.032 0.000
#> SRR1201713 3 0.0880 0.9142 0.000 0.000 0.968 0.032 0.000
#> SRR1201710 3 0.0880 0.9142 0.000 0.000 0.968 0.032 0.000
#> SRR1201719 3 0.2719 0.8498 0.000 0.068 0.884 0.048 0.000
#> SRR1201718 5 0.4549 0.5668 0.000 0.096 0.052 0.060 0.792
#> SRR1201721 3 0.0162 0.9176 0.000 0.004 0.996 0.000 0.000
#> SRR1201720 5 0.1082 0.8344 0.000 0.000 0.008 0.028 0.964
#> SRR1201723 3 0.1430 0.9080 0.000 0.000 0.944 0.052 0.004
#> SRR1201722 5 0.2674 0.7205 0.000 0.000 0.012 0.120 0.868
#> SRR1201725 3 0.1484 0.9027 0.000 0.008 0.944 0.048 0.000
#> SRR1201724 5 0.2537 0.7913 0.000 0.024 0.016 0.056 0.904
#> SRR1201726 5 0.1168 0.8327 0.000 0.000 0.008 0.032 0.960
#> SRR1201727 3 0.0451 0.9177 0.000 0.004 0.988 0.008 0.000
#> SRR1201731 3 0.0324 0.9175 0.000 0.004 0.992 0.004 0.000
#> SRR1201730 5 0.1522 0.8295 0.000 0.000 0.012 0.044 0.944
#> SRR1201734 2 0.4248 0.9340 0.000 0.728 0.240 0.032 0.000
#> SRR1201733 5 0.3051 0.8010 0.000 0.076 0.000 0.060 0.864
#> SRR1201736 5 0.2504 0.8208 0.000 0.040 0.000 0.064 0.896
#> SRR1201737 2 0.4248 0.9340 0.000 0.728 0.240 0.032 0.000
#> SRR1201739 2 0.4248 0.9340 0.000 0.728 0.240 0.032 0.000
#> SRR1201738 5 0.4355 0.6364 0.000 0.164 0.000 0.076 0.760
#> SRR1201742 5 0.2291 0.8254 0.000 0.036 0.000 0.056 0.908
#> SRR1201743 2 0.4527 0.9047 0.000 0.700 0.260 0.040 0.000
#> SRR1201745 2 0.3981 0.9136 0.000 0.764 0.212 0.012 0.012
#> SRR1201744 5 0.2504 0.8208 0.000 0.040 0.000 0.064 0.896
#> SRR1201749 5 0.2504 0.8208 0.000 0.040 0.000 0.064 0.896
#> SRR1201750 2 0.3807 0.9303 0.000 0.748 0.240 0.012 0.000
#> SRR1201752 3 0.0566 0.9162 0.000 0.004 0.984 0.012 0.000
#> SRR1201751 5 0.0992 0.8346 0.000 0.000 0.008 0.024 0.968
#> SRR1201754 2 0.4844 0.8755 0.000 0.668 0.280 0.052 0.000
#> SRR1201753 5 0.2790 0.8157 0.000 0.052 0.000 0.068 0.880
#> SRR1201758 4 0.4341 0.9889 0.000 0.000 0.008 0.628 0.364
#> SRR1201759 3 0.3061 0.8245 0.000 0.000 0.844 0.136 0.020
#> SRR1201760 5 0.1082 0.8344 0.000 0.000 0.008 0.028 0.964
#> SRR1201761 3 0.0324 0.9178 0.000 0.004 0.992 0.004 0.000
#> SRR1201763 3 0.3380 0.8307 0.000 0.028 0.840 0.124 0.008
#> SRR1201762 4 0.4974 0.9866 0.000 0.024 0.008 0.604 0.364
#> SRR1201764 5 0.2358 0.7799 0.000 0.000 0.008 0.104 0.888
#> SRR1201766 5 0.3791 0.7366 0.000 0.112 0.000 0.076 0.812
#> SRR1201768 2 0.4295 0.9330 0.000 0.732 0.236 0.028 0.004
#> SRR1201769 2 0.4295 0.9330 0.000 0.732 0.236 0.028 0.004
#> SRR1201767 2 0.4295 0.9330 0.000 0.732 0.236 0.028 0.004
#> SRR1201770 2 0.4295 0.9330 0.000 0.732 0.236 0.028 0.004
#> SRR1201771 2 0.4295 0.9330 0.000 0.732 0.236 0.028 0.004
#> SRR1201772 2 0.4295 0.9330 0.000 0.732 0.236 0.028 0.004
#> SRR1201773 2 0.4295 0.9330 0.000 0.732 0.236 0.028 0.004
#> SRR1201774 2 0.4295 0.9330 0.000 0.732 0.236 0.028 0.004
#> SRR1201786 2 0.4295 0.9330 0.000 0.732 0.236 0.028 0.004
#> SRR1201784 2 0.4295 0.9330 0.000 0.732 0.236 0.028 0.004
#> SRR1201785 2 0.4295 0.9330 0.000 0.732 0.236 0.028 0.004
#> SRR1201778 5 0.2580 0.8192 0.000 0.044 0.000 0.064 0.892
#> SRR1201779 2 0.4295 0.9330 0.000 0.732 0.236 0.028 0.004
#> SRR1201781 2 0.4295 0.9330 0.000 0.732 0.236 0.028 0.004
#> SRR1201780 2 0.4295 0.9330 0.000 0.732 0.236 0.028 0.004
#> SRR1201783 2 0.4295 0.9330 0.000 0.732 0.236 0.028 0.004
#> SRR1201782 2 0.4295 0.9330 0.000 0.732 0.236 0.028 0.004
#> SRR1201798 2 0.4248 0.9340 0.000 0.728 0.240 0.032 0.000
#> SRR1201797 2 0.4248 0.9340 0.000 0.728 0.240 0.032 0.000
#> SRR1201796 2 0.4248 0.9340 0.000 0.728 0.240 0.032 0.000
#> SRR1201795 2 0.4248 0.9340 0.000 0.728 0.240 0.032 0.000
#> SRR1201799 2 0.4248 0.9340 0.000 0.728 0.240 0.032 0.000
#> SRR1201794 2 0.4248 0.9340 0.000 0.728 0.240 0.032 0.000
#> SRR1201793 2 0.4248 0.9340 0.000 0.728 0.240 0.032 0.000
#> SRR1201792 2 0.4248 0.9340 0.000 0.728 0.240 0.032 0.000
#> SRR1201791 5 0.5579 0.0933 0.000 0.420 0.000 0.072 0.508
#> SRR1201807 2 0.3906 0.9300 0.000 0.744 0.240 0.016 0.000
#> SRR1201808 2 0.3906 0.9300 0.000 0.744 0.240 0.016 0.000
#> SRR1201803 2 0.3906 0.9300 0.000 0.744 0.240 0.016 0.000
#> SRR1201804 2 0.3906 0.9300 0.000 0.744 0.240 0.016 0.000
#> SRR1201805 2 0.3906 0.9300 0.000 0.744 0.240 0.016 0.000
#> SRR1201806 2 0.3906 0.9300 0.000 0.744 0.240 0.016 0.000
#> SRR1201801 2 0.3906 0.9300 0.000 0.744 0.240 0.016 0.000
#> SRR1201802 2 0.3906 0.9300 0.000 0.744 0.240 0.016 0.000
#> SRR1201800 5 0.4928 0.4009 0.000 0.284 0.000 0.056 0.660
#> SRR1201814 2 0.3906 0.9300 0.000 0.744 0.240 0.016 0.000
#> SRR1201816 2 0.3906 0.9300 0.000 0.744 0.240 0.016 0.000
#> SRR1201815 2 0.3906 0.9300 0.000 0.744 0.240 0.016 0.000
#> SRR1201819 2 0.3906 0.9300 0.000 0.744 0.240 0.016 0.000
#> SRR1201820 2 0.3906 0.9300 0.000 0.744 0.240 0.016 0.000
#> SRR1201813 2 0.4956 0.1916 0.000 0.636 0.000 0.048 0.316
#> SRR1201817 2 0.3906 0.9300 0.000 0.744 0.240 0.016 0.000
#> SRR1201818 2 0.3906 0.9300 0.000 0.744 0.240 0.016 0.000
#> SRR1201825 5 0.1697 0.8282 0.000 0.000 0.008 0.060 0.932
#> SRR1201827 3 0.1041 0.9127 0.000 0.000 0.964 0.032 0.004
#> SRR1201828 3 0.1041 0.9127 0.000 0.000 0.964 0.032 0.004
#> SRR1201826 5 0.0898 0.8383 0.000 0.000 0.008 0.020 0.972
#> SRR1201829 3 0.1041 0.9127 0.000 0.000 0.964 0.032 0.004
#> SRR1201830 3 0.1041 0.9127 0.000 0.000 0.964 0.032 0.004
#> SRR1201831 3 0.1041 0.9127 0.000 0.000 0.964 0.032 0.004
#> SRR1201832 3 0.1041 0.9127 0.000 0.000 0.964 0.032 0.004
#> SRR1201833 3 0.1041 0.9127 0.000 0.000 0.964 0.032 0.004
#> SRR1201865 3 0.5582 0.6401 0.000 0.152 0.708 0.052 0.088
#> SRR1201866 3 0.5582 0.6401 0.000 0.152 0.708 0.052 0.088
#> SRR1201867 3 0.5582 0.6401 0.000 0.152 0.708 0.052 0.088
#> SRR1201861 3 0.5582 0.6401 0.000 0.152 0.708 0.052 0.088
#> SRR1201862 3 0.5582 0.6401 0.000 0.152 0.708 0.052 0.088
#> SRR1201863 3 0.5582 0.6401 0.000 0.152 0.708 0.052 0.088
#> SRR1201859 5 0.1525 0.8406 0.000 0.012 0.004 0.036 0.948
#> SRR1201864 3 0.5582 0.6401 0.000 0.152 0.708 0.052 0.088
#> SRR1201860 3 0.5582 0.6401 0.000 0.152 0.708 0.052 0.088
#> SRR1201873 3 0.0955 0.9148 0.000 0.000 0.968 0.028 0.004
#> SRR1201871 5 0.1331 0.8266 0.000 0.000 0.008 0.040 0.952
#> SRR1201872 3 0.0955 0.9148 0.000 0.000 0.968 0.028 0.004
#> SRR1201980 3 0.0324 0.9175 0.000 0.004 0.992 0.004 0.000
#> SRR1201979 5 0.1082 0.8344 0.000 0.000 0.008 0.028 0.964
#> SRR1201982 3 0.1124 0.9105 0.000 0.004 0.960 0.036 0.000
#> SRR1201981 5 0.1251 0.8331 0.000 0.000 0.008 0.036 0.956
#> SRR1201998 3 0.2228 0.8790 0.000 0.040 0.912 0.048 0.000
#> SRR1201996 5 0.1710 0.8261 0.000 0.016 0.004 0.040 0.940
#> SRR1201997 3 0.3090 0.8237 0.000 0.088 0.860 0.052 0.000
#> SRR1202005 2 0.6724 0.7574 0.000 0.576 0.244 0.056 0.124
#> SRR1202006 2 0.5160 0.7930 0.000 0.608 0.336 0.056 0.000
#> SRR1202088 3 0.4010 0.6934 0.000 0.160 0.784 0.056 0.000
#> SRR1202087 5 0.3926 0.7490 0.000 0.048 0.020 0.112 0.820
#> SRR1202093 2 0.4398 0.9324 0.000 0.720 0.240 0.040 0.000
#> SRR1202092 5 0.3362 0.7805 0.000 0.076 0.000 0.080 0.844
#> SRR1202288 5 0.2654 0.8173 0.000 0.048 0.000 0.064 0.888
#> SRR1202289 2 0.4169 0.9335 0.000 0.732 0.240 0.028 0.000
#> SRR1202299 2 0.3906 0.9300 0.000 0.744 0.240 0.016 0.000
#> SRR1202298 2 0.4801 0.2747 0.000 0.668 0.000 0.048 0.284
#> SRR1202303 3 0.3380 0.8307 0.000 0.028 0.840 0.124 0.008
#> SRR1202372 2 0.3906 0.9300 0.000 0.744 0.240 0.016 0.000
#> SRR1202371 5 0.2504 0.8208 0.000 0.040 0.000 0.064 0.896
#> SRR1202563 5 0.1377 0.8395 0.000 0.020 0.004 0.020 0.956
#> SRR1202565 3 0.3019 0.8281 0.000 0.088 0.864 0.048 0.000
#> SRR1202564 3 0.3019 0.8281 0.000 0.088 0.864 0.048 0.000
#> SRR1202649 5 0.1525 0.8406 0.000 0.012 0.004 0.036 0.948
#> SRR1202650 5 0.0740 0.8430 0.000 0.008 0.004 0.008 0.980
#> SRR1202651 2 0.5084 0.8019 0.000 0.616 0.332 0.052 0.000
#> SRR1202843 1 0.0693 0.9425 0.980 0.012 0.000 0.008 0.000
#> SRR1202844 1 0.0693 0.9425 0.980 0.012 0.000 0.008 0.000
#> SRR1202845 5 0.0613 0.8430 0.000 0.008 0.004 0.004 0.984
#> SRR1202847 2 0.5294 0.7944 0.000 0.608 0.332 0.056 0.004
#> SRR1202846 2 0.5294 0.7944 0.000 0.608 0.332 0.056 0.004
#> SRR1202945 1 0.0162 0.9444 0.996 0.000 0.000 0.004 0.000
#> SRR1202949 1 0.2843 0.9211 0.876 0.048 0.000 0.076 0.000
#> SRR1202977 1 0.2580 0.9268 0.892 0.044 0.000 0.064 0.000
#> SRR1202978 1 0.0671 0.9428 0.980 0.016 0.000 0.004 0.000
#> SRR1202979 1 0.0510 0.9440 0.984 0.000 0.000 0.016 0.000
#> SRR1202990 1 0.2843 0.9211 0.876 0.048 0.000 0.076 0.000
#> SRR1202999 1 0.2843 0.9211 0.876 0.048 0.000 0.076 0.000
#> SRR1203005 1 0.0693 0.9425 0.980 0.012 0.000 0.008 0.000
#> SRR1203006 1 0.0579 0.9431 0.984 0.008 0.000 0.008 0.000
#> SRR1203007 1 0.2193 0.9339 0.912 0.028 0.000 0.060 0.000
#> SRR1203009 1 0.2708 0.9245 0.884 0.044 0.000 0.072 0.000
#> SRR1203008 1 0.2843 0.9211 0.876 0.048 0.000 0.076 0.000
#> SRR1203010 1 0.2843 0.9211 0.876 0.048 0.000 0.076 0.000
#> SRR1203011 1 0.2770 0.9229 0.880 0.044 0.000 0.076 0.000
#> SRR1203025 1 0.2569 0.9273 0.892 0.040 0.000 0.068 0.000
#> SRR1203026 1 0.2843 0.9211 0.876 0.048 0.000 0.076 0.000
#> SRR1203027 1 0.0771 0.9430 0.976 0.004 0.000 0.020 0.000
#> SRR1203061 1 0.0290 0.9442 0.992 0.000 0.000 0.008 0.000
#> SRR1203089 1 0.0451 0.9441 0.988 0.004 0.000 0.008 0.000
#> SRR1203125 1 0.0912 0.9438 0.972 0.012 0.000 0.016 0.000
#> SRR1203128 1 0.0798 0.9416 0.976 0.016 0.000 0.008 0.000
#> SRR1203129 1 0.0798 0.9416 0.976 0.016 0.000 0.008 0.000
#> SRR1203130 1 0.0798 0.9416 0.976 0.016 0.000 0.008 0.000
#> SRR1203132 3 0.0865 0.9145 0.000 0.004 0.972 0.024 0.000
#> SRR1203131 5 0.1082 0.8344 0.000 0.000 0.008 0.028 0.964
#> SRR1203133 1 0.0693 0.9425 0.980 0.012 0.000 0.008 0.000
#> SRR1203138 1 0.2473 0.9282 0.896 0.032 0.000 0.072 0.000
#> SRR1203760 1 0.0798 0.9416 0.976 0.016 0.000 0.008 0.000
#> SRR1203761 1 0.0798 0.9416 0.976 0.016 0.000 0.008 0.000
#> SRR1203770 1 0.0693 0.9425 0.980 0.012 0.000 0.008 0.000
#> SRR1203771 1 0.2843 0.9211 0.876 0.048 0.000 0.076 0.000
#> SRR1203772 1 0.2843 0.9211 0.876 0.048 0.000 0.076 0.000
#> SRR1203773 1 0.0798 0.9416 0.976 0.016 0.000 0.008 0.000
#> SRR1203774 1 0.2694 0.9245 0.884 0.040 0.000 0.076 0.000
#> SRR1203775 1 0.2450 0.9283 0.896 0.028 0.000 0.076 0.000
#> SRR1203800 1 0.2770 0.9228 0.880 0.044 0.000 0.076 0.000
#> SRR1203801 1 0.0798 0.9416 0.976 0.016 0.000 0.008 0.000
#> SRR1203802 1 0.0798 0.9416 0.976 0.016 0.000 0.008 0.000
#> SRR1203803 1 0.0798 0.9416 0.976 0.016 0.000 0.008 0.000
#> SRR1203804 1 0.2843 0.9211 0.876 0.048 0.000 0.076 0.000
#> SRR1203805 1 0.2843 0.9211 0.876 0.048 0.000 0.076 0.000
#> SRR1203806 1 0.0693 0.9425 0.980 0.012 0.000 0.008 0.000
#> SRR1203807 1 0.0451 0.9443 0.988 0.004 0.000 0.008 0.000
#> SRR1203808 1 0.0798 0.9416 0.976 0.016 0.000 0.008 0.000
#> SRR1203811 1 0.0798 0.9416 0.976 0.016 0.000 0.008 0.000
#> SRR1203812 1 0.2843 0.9211 0.876 0.048 0.000 0.076 0.000
#> SRR1203813 1 0.2843 0.9211 0.876 0.048 0.000 0.076 0.000
#> SRR1203814 1 0.0404 0.9437 0.988 0.000 0.000 0.012 0.000
#> SRR1203815 1 0.0290 0.9439 0.992 0.000 0.000 0.008 0.000
#> SRR1203816 1 0.0693 0.9446 0.980 0.008 0.000 0.012 0.000
#> SRR1203817 1 0.0451 0.9440 0.988 0.004 0.000 0.008 0.000
#> SRR1203818 1 0.2843 0.9211 0.876 0.048 0.000 0.076 0.000
#> SRR1203819 1 0.0693 0.9425 0.980 0.012 0.000 0.008 0.000
#> SRR1203822 1 0.0798 0.9416 0.976 0.016 0.000 0.008 0.000
#> SRR1203823 1 0.1399 0.9429 0.952 0.020 0.000 0.028 0.000
#> SRR1203824 1 0.0807 0.9449 0.976 0.012 0.000 0.012 0.000
#> SRR1203825 1 0.0865 0.9428 0.972 0.004 0.000 0.024 0.000
#> SRR1203826 1 0.2554 0.9286 0.892 0.036 0.000 0.072 0.000
#> SRR1203827 1 0.4807 0.7959 0.728 0.140 0.000 0.132 0.000
#> SRR1203828 1 0.2694 0.9244 0.884 0.040 0.000 0.076 0.000
#> SRR1203829 1 0.0693 0.9438 0.980 0.012 0.000 0.008 0.000
#> SRR1203830 1 0.0693 0.9425 0.980 0.012 0.000 0.008 0.000
#> SRR1203831 1 0.2843 0.9211 0.876 0.048 0.000 0.076 0.000
#> SRR1203832 1 0.2843 0.9211 0.876 0.048 0.000 0.076 0.000
#> SRR1203833 1 0.2300 0.9320 0.904 0.024 0.000 0.072 0.000
#> SRR1203834 1 0.0798 0.9416 0.976 0.016 0.000 0.008 0.000
#> SRR1203835 1 0.0798 0.9416 0.976 0.016 0.000 0.008 0.000
#> SRR1203836 1 0.0798 0.9416 0.976 0.016 0.000 0.008 0.000
#> SRR1203837 1 0.2473 0.9282 0.896 0.032 0.000 0.072 0.000
#> SRR1203838 1 0.0404 0.9441 0.988 0.000 0.000 0.012 0.000
#> SRR1203839 1 0.0807 0.9434 0.976 0.012 0.000 0.012 0.000
#> SRR1203842 1 0.4764 0.7973 0.732 0.140 0.000 0.128 0.000
#> SRR1203843 1 0.0798 0.9416 0.976 0.016 0.000 0.008 0.000
#> SRR1203845 2 0.4949 0.8639 0.000 0.656 0.288 0.056 0.000
#> SRR1203844 5 0.3030 0.7643 0.000 0.088 0.004 0.040 0.868
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 2 0.3818 0.9029 0.000 0.784 0.128 0.004 0.000 NA
#> SRR1201590 5 0.3820 0.7026 0.000 0.004 0.000 0.004 0.660 NA
#> SRR1201593 2 0.3818 0.9029 0.000 0.784 0.128 0.004 0.000 NA
#> SRR1201592 5 0.4554 0.6499 0.000 0.036 0.000 0.004 0.600 NA
#> SRR1201617 2 0.3818 0.9029 0.000 0.784 0.128 0.004 0.000 NA
#> SRR1201616 5 0.4341 0.6670 0.000 0.024 0.000 0.004 0.616 NA
#> SRR1201619 2 0.2890 0.8908 0.000 0.848 0.124 0.012 0.000 NA
#> SRR1201618 5 0.3565 0.7180 0.000 0.000 0.000 0.004 0.692 NA
#> SRR1201620 5 0.4122 0.7038 0.000 0.020 0.000 0.004 0.660 NA
#> SRR1201621 2 0.2135 0.8967 0.000 0.872 0.128 0.000 0.000 NA
#> SRR1201623 3 0.1592 0.8760 0.000 0.012 0.944 0.024 0.004 NA
#> SRR1201622 5 0.1500 0.7338 0.000 0.000 0.000 0.052 0.936 NA
#> SRR1201624 4 0.2669 0.9703 0.000 0.000 0.000 0.836 0.156 NA
#> SRR1201625 3 0.3656 0.7983 0.000 0.012 0.808 0.072 0.000 NA
#> SRR1201626 4 0.3736 0.9669 0.000 0.020 0.000 0.788 0.160 NA
#> SRR1201627 3 0.3656 0.7983 0.000 0.012 0.808 0.072 0.000 NA
#> SRR1201628 5 0.1007 0.7448 0.000 0.000 0.000 0.044 0.956 NA
#> SRR1201629 3 0.0405 0.8831 0.000 0.000 0.988 0.008 0.000 NA
#> SRR1201630 5 0.0935 0.7660 0.000 0.004 0.000 0.000 0.964 NA
#> SRR1201631 2 0.5403 0.6406 0.000 0.616 0.292 0.020 0.020 NA
#> SRR1201641 3 0.4197 0.7001 0.000 0.176 0.752 0.020 0.000 NA
#> SRR1201640 5 0.1605 0.7595 0.000 0.004 0.000 0.016 0.936 NA
#> SRR1201643 5 0.0622 0.7560 0.000 0.000 0.000 0.008 0.980 NA
#> SRR1201644 3 0.4364 0.7397 0.000 0.140 0.768 0.024 0.012 NA
#> SRR1201661 5 0.1606 0.7630 0.000 0.004 0.000 0.008 0.932 NA
#> SRR1201662 2 0.5374 0.5507 0.000 0.576 0.340 0.020 0.008 NA
#> SRR1201663 5 0.3710 0.5740 0.000 0.004 0.000 0.144 0.788 NA
#> SRR1201664 3 0.3811 0.7933 0.000 0.008 0.820 0.052 0.036 NA
#> SRR1201665 5 0.3619 0.7131 0.000 0.000 0.000 0.004 0.680 NA
#> SRR1201666 2 0.4163 0.8999 0.000 0.768 0.128 0.016 0.000 NA
#> SRR1201667 2 0.4163 0.8999 0.000 0.768 0.128 0.016 0.000 NA
#> SRR1201668 5 0.4382 0.5691 0.000 0.004 0.000 0.164 0.728 NA
#> SRR1201670 3 0.3913 0.7914 0.000 0.008 0.788 0.072 0.004 NA
#> SRR1201669 3 0.3913 0.7914 0.000 0.008 0.788 0.072 0.004 NA
#> SRR1201673 3 0.1821 0.8730 0.000 0.008 0.928 0.024 0.000 NA
#> SRR1201672 3 0.1821 0.8730 0.000 0.008 0.928 0.024 0.000 NA
#> SRR1201671 5 0.1049 0.7667 0.000 0.000 0.000 0.008 0.960 NA
#> SRR1201677 3 0.1821 0.8730 0.000 0.008 0.928 0.024 0.000 NA
#> SRR1201676 3 0.1821 0.8730 0.000 0.008 0.928 0.024 0.000 NA
#> SRR1201675 3 0.1821 0.8730 0.000 0.008 0.928 0.024 0.000 NA
#> SRR1201674 3 0.1821 0.8730 0.000 0.008 0.928 0.024 0.000 NA
#> SRR1201678 3 0.1821 0.8730 0.000 0.008 0.928 0.024 0.000 NA
#> SRR1201682 2 0.3606 0.8588 0.000 0.788 0.172 0.016 0.000 NA
#> SRR1201683 2 0.3606 0.8588 0.000 0.788 0.172 0.016 0.000 NA
#> SRR1201680 2 0.3606 0.8588 0.000 0.788 0.172 0.016 0.000 NA
#> SRR1201681 2 0.3606 0.8588 0.000 0.788 0.172 0.016 0.000 NA
#> SRR1201679 5 0.4106 0.7064 0.000 0.020 0.000 0.004 0.664 NA
#> SRR1201686 3 0.3985 0.7841 0.000 0.008 0.784 0.084 0.004 NA
#> SRR1201687 3 0.3985 0.7841 0.000 0.008 0.784 0.084 0.004 NA
#> SRR1201688 3 0.3985 0.7841 0.000 0.008 0.784 0.084 0.004 NA
#> SRR1201689 3 0.3985 0.7841 0.000 0.008 0.784 0.084 0.004 NA
#> SRR1201685 4 0.3555 0.9427 0.000 0.000 0.000 0.776 0.184 NA
#> SRR1201692 3 0.0000 0.8828 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201691 3 0.0000 0.8828 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201690 5 0.0865 0.7468 0.000 0.000 0.000 0.036 0.964 NA
#> SRR1201696 3 0.0000 0.8828 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201695 3 0.0000 0.8828 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201694 3 0.0000 0.8828 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201693 3 0.0000 0.8828 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201697 3 0.0000 0.8828 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201698 3 0.0000 0.8828 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201700 5 0.1904 0.7264 0.000 0.004 0.004 0.048 0.924 NA
#> SRR1201708 3 0.0405 0.8830 0.000 0.000 0.988 0.008 0.000 NA
#> SRR1201707 3 0.0405 0.8830 0.000 0.000 0.988 0.008 0.000 NA
#> SRR1201706 3 0.0405 0.8830 0.000 0.000 0.988 0.008 0.000 NA
#> SRR1201702 3 0.0405 0.8830 0.000 0.000 0.988 0.008 0.000 NA
#> SRR1201705 3 0.0405 0.8830 0.000 0.000 0.988 0.008 0.000 NA
#> SRR1201701 3 0.0405 0.8830 0.000 0.000 0.988 0.008 0.000 NA
#> SRR1201704 3 0.0405 0.8830 0.000 0.000 0.988 0.008 0.000 NA
#> SRR1201703 3 0.0405 0.8830 0.000 0.000 0.988 0.008 0.000 NA
#> SRR1201716 3 0.0909 0.8815 0.000 0.000 0.968 0.020 0.000 NA
#> SRR1201715 3 0.0909 0.8815 0.000 0.000 0.968 0.020 0.000 NA
#> SRR1201717 3 0.0909 0.8815 0.000 0.000 0.968 0.020 0.000 NA
#> SRR1201712 3 0.0909 0.8815 0.000 0.000 0.968 0.020 0.000 NA
#> SRR1201709 5 0.2886 0.6686 0.000 0.004 0.000 0.072 0.860 NA
#> SRR1201711 3 0.0909 0.8815 0.000 0.000 0.968 0.020 0.000 NA
#> SRR1201714 3 0.0909 0.8815 0.000 0.000 0.968 0.020 0.000 NA
#> SRR1201713 3 0.0909 0.8815 0.000 0.000 0.968 0.020 0.000 NA
#> SRR1201710 3 0.0909 0.8815 0.000 0.000 0.968 0.020 0.000 NA
#> SRR1201719 3 0.3605 0.7830 0.000 0.108 0.816 0.020 0.000 NA
#> SRR1201718 5 0.4303 0.6131 0.000 0.080 0.032 0.020 0.792 NA
#> SRR1201721 3 0.0146 0.8830 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1201720 5 0.1245 0.7447 0.000 0.000 0.000 0.032 0.952 NA
#> SRR1201723 3 0.2461 0.8513 0.000 0.004 0.888 0.044 0.000 NA
#> SRR1201722 5 0.3748 0.5685 0.000 0.004 0.000 0.148 0.784 NA
#> SRR1201725 3 0.2521 0.8437 0.000 0.032 0.892 0.020 0.000 NA
#> SRR1201724 5 0.2405 0.7353 0.000 0.008 0.004 0.016 0.892 NA
#> SRR1201726 5 0.1367 0.7393 0.000 0.000 0.000 0.044 0.944 NA
#> SRR1201727 3 0.0622 0.8823 0.000 0.000 0.980 0.008 0.000 NA
#> SRR1201731 3 0.0603 0.8817 0.000 0.000 0.980 0.004 0.000 NA
#> SRR1201730 5 0.1938 0.7373 0.000 0.000 0.004 0.040 0.920 NA
#> SRR1201734 2 0.3818 0.9029 0.000 0.784 0.128 0.004 0.000 NA
#> SRR1201733 5 0.3805 0.7043 0.000 0.004 0.000 0.004 0.664 NA
#> SRR1201736 5 0.3584 0.7163 0.000 0.000 0.000 0.004 0.688 NA
#> SRR1201737 2 0.3826 0.9016 0.000 0.784 0.124 0.004 0.000 NA
#> SRR1201739 2 0.3867 0.9025 0.000 0.780 0.128 0.004 0.000 NA
#> SRR1201738 5 0.4456 0.6443 0.000 0.028 0.000 0.004 0.596 NA
#> SRR1201742 5 0.3290 0.7377 0.000 0.000 0.000 0.004 0.744 NA
#> SRR1201743 2 0.3219 0.8799 0.000 0.820 0.148 0.012 0.000 NA
#> SRR1201745 2 0.2651 0.8684 0.000 0.872 0.088 0.000 0.004 NA
#> SRR1201744 5 0.3738 0.7135 0.000 0.004 0.000 0.004 0.680 NA
#> SRR1201749 5 0.3721 0.7154 0.000 0.004 0.000 0.004 0.684 NA
#> SRR1201750 2 0.2092 0.8960 0.000 0.876 0.124 0.000 0.000 NA
#> SRR1201752 3 0.0000 0.8828 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201751 5 0.0865 0.7468 0.000 0.000 0.000 0.036 0.964 NA
#> SRR1201754 2 0.4086 0.8178 0.000 0.752 0.188 0.016 0.000 NA
#> SRR1201753 5 0.3665 0.7223 0.000 0.004 0.000 0.004 0.696 NA
#> SRR1201758 4 0.2896 0.9676 0.000 0.000 0.000 0.824 0.160 NA
#> SRR1201759 3 0.4870 0.6948 0.000 0.004 0.728 0.116 0.036 NA
#> SRR1201760 5 0.0865 0.7468 0.000 0.000 0.000 0.036 0.964 NA
#> SRR1201761 3 0.0000 0.8828 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201763 3 0.3656 0.7983 0.000 0.012 0.808 0.072 0.000 NA
#> SRR1201762 4 0.3736 0.9669 0.000 0.020 0.000 0.788 0.160 NA
#> SRR1201764 5 0.2706 0.6641 0.000 0.000 0.000 0.160 0.832 NA
#> SRR1201766 5 0.4467 0.6413 0.000 0.028 0.000 0.004 0.592 NA
#> SRR1201768 2 0.3922 0.8989 0.000 0.776 0.124 0.004 0.000 NA
#> SRR1201769 2 0.3922 0.8989 0.000 0.776 0.124 0.004 0.000 NA
#> SRR1201767 2 0.3922 0.8989 0.000 0.776 0.124 0.004 0.000 NA
#> SRR1201770 2 0.3922 0.8989 0.000 0.776 0.124 0.004 0.000 NA
#> SRR1201771 2 0.3922 0.8989 0.000 0.776 0.124 0.004 0.000 NA
#> SRR1201772 2 0.3922 0.8989 0.000 0.776 0.124 0.004 0.000 NA
#> SRR1201773 2 0.3922 0.8989 0.000 0.776 0.124 0.004 0.000 NA
#> SRR1201774 2 0.3922 0.8989 0.000 0.776 0.124 0.004 0.000 NA
#> SRR1201786 2 0.3922 0.8989 0.000 0.776 0.124 0.004 0.000 NA
#> SRR1201784 2 0.3922 0.8989 0.000 0.776 0.124 0.004 0.000 NA
#> SRR1201785 2 0.3922 0.8989 0.000 0.776 0.124 0.004 0.000 NA
#> SRR1201778 5 0.3636 0.7119 0.000 0.000 0.000 0.004 0.676 NA
#> SRR1201779 2 0.3922 0.8989 0.000 0.776 0.124 0.004 0.000 NA
#> SRR1201781 2 0.3922 0.8989 0.000 0.776 0.124 0.004 0.000 NA
#> SRR1201780 2 0.3922 0.8989 0.000 0.776 0.124 0.004 0.000 NA
#> SRR1201783 2 0.3922 0.8989 0.000 0.776 0.124 0.004 0.000 NA
#> SRR1201782 2 0.3922 0.8989 0.000 0.776 0.124 0.004 0.000 NA
#> SRR1201798 2 0.3818 0.9029 0.000 0.784 0.128 0.004 0.000 NA
#> SRR1201797 2 0.3818 0.9029 0.000 0.784 0.128 0.004 0.000 NA
#> SRR1201796 2 0.3818 0.9029 0.000 0.784 0.128 0.004 0.000 NA
#> SRR1201795 2 0.3818 0.9029 0.000 0.784 0.128 0.004 0.000 NA
#> SRR1201799 2 0.3818 0.9029 0.000 0.784 0.128 0.004 0.000 NA
#> SRR1201794 2 0.3818 0.9029 0.000 0.784 0.128 0.004 0.000 NA
#> SRR1201793 2 0.3818 0.9029 0.000 0.784 0.128 0.004 0.000 NA
#> SRR1201792 2 0.3818 0.9029 0.000 0.784 0.128 0.004 0.000 NA
#> SRR1201791 5 0.5818 0.3369 0.000 0.184 0.000 0.000 0.424 NA
#> SRR1201807 2 0.2135 0.8967 0.000 0.872 0.128 0.000 0.000 NA
#> SRR1201808 2 0.2135 0.8967 0.000 0.872 0.128 0.000 0.000 NA
#> SRR1201803 2 0.2135 0.8967 0.000 0.872 0.128 0.000 0.000 NA
#> SRR1201804 2 0.2135 0.8967 0.000 0.872 0.128 0.000 0.000 NA
#> SRR1201805 2 0.2135 0.8967 0.000 0.872 0.128 0.000 0.000 NA
#> SRR1201806 2 0.2135 0.8967 0.000 0.872 0.128 0.000 0.000 NA
#> SRR1201801 2 0.2135 0.8967 0.000 0.872 0.128 0.000 0.000 NA
#> SRR1201802 2 0.2135 0.8967 0.000 0.872 0.128 0.000 0.000 NA
#> SRR1201800 5 0.5389 0.5819 0.000 0.116 0.000 0.004 0.552 NA
#> SRR1201814 2 0.2135 0.8967 0.000 0.872 0.128 0.000 0.000 NA
#> SRR1201816 2 0.2135 0.8967 0.000 0.872 0.128 0.000 0.000 NA
#> SRR1201815 2 0.2135 0.8967 0.000 0.872 0.128 0.000 0.000 NA
#> SRR1201819 2 0.2135 0.8967 0.000 0.872 0.128 0.000 0.000 NA
#> SRR1201820 2 0.2135 0.8967 0.000 0.872 0.128 0.000 0.000 NA
#> SRR1201813 2 0.6039 -0.1615 0.000 0.412 0.000 0.000 0.264 NA
#> SRR1201817 2 0.2135 0.8967 0.000 0.872 0.128 0.000 0.000 NA
#> SRR1201818 2 0.2135 0.8967 0.000 0.872 0.128 0.000 0.000 NA
#> SRR1201825 5 0.1970 0.7395 0.000 0.000 0.000 0.060 0.912 NA
#> SRR1201827 3 0.1498 0.8743 0.000 0.000 0.940 0.032 0.000 NA
#> SRR1201828 3 0.1498 0.8743 0.000 0.000 0.940 0.032 0.000 NA
#> SRR1201826 5 0.1010 0.7523 0.000 0.000 0.000 0.036 0.960 NA
#> SRR1201829 3 0.1498 0.8743 0.000 0.000 0.940 0.032 0.000 NA
#> SRR1201830 3 0.1498 0.8743 0.000 0.000 0.940 0.032 0.000 NA
#> SRR1201831 3 0.1498 0.8743 0.000 0.000 0.940 0.032 0.000 NA
#> SRR1201832 3 0.1498 0.8743 0.000 0.000 0.940 0.032 0.000 NA
#> SRR1201833 3 0.1498 0.8743 0.000 0.000 0.940 0.032 0.000 NA
#> SRR1201865 3 0.6370 0.5097 0.000 0.200 0.588 0.052 0.140 NA
#> SRR1201866 3 0.6370 0.5097 0.000 0.200 0.588 0.052 0.140 NA
#> SRR1201867 3 0.6370 0.5097 0.000 0.200 0.588 0.052 0.140 NA
#> SRR1201861 3 0.6370 0.5097 0.000 0.200 0.588 0.052 0.140 NA
#> SRR1201862 3 0.6370 0.5097 0.000 0.200 0.588 0.052 0.140 NA
#> SRR1201863 3 0.6370 0.5097 0.000 0.200 0.588 0.052 0.140 NA
#> SRR1201859 5 0.2923 0.7563 0.000 0.000 0.000 0.052 0.848 NA
#> SRR1201864 3 0.6370 0.5097 0.000 0.200 0.588 0.052 0.140 NA
#> SRR1201860 3 0.6370 0.5097 0.000 0.200 0.588 0.052 0.140 NA
#> SRR1201873 3 0.1457 0.8761 0.000 0.004 0.948 0.028 0.004 NA
#> SRR1201871 5 0.1563 0.7332 0.000 0.000 0.000 0.056 0.932 NA
#> SRR1201872 3 0.1457 0.8761 0.000 0.004 0.948 0.028 0.004 NA
#> SRR1201980 3 0.0000 0.8828 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1201979 5 0.1010 0.7458 0.000 0.000 0.000 0.036 0.960 NA
#> SRR1201982 3 0.1657 0.8633 0.000 0.000 0.928 0.016 0.000 NA
#> SRR1201981 5 0.0725 0.7561 0.000 0.000 0.000 0.012 0.976 NA
#> SRR1201998 3 0.3211 0.8123 0.000 0.076 0.848 0.020 0.000 NA
#> SRR1201996 5 0.2036 0.7483 0.000 0.008 0.000 0.016 0.912 NA
#> SRR1201997 3 0.3900 0.7535 0.000 0.136 0.788 0.020 0.000 NA
#> SRR1202005 2 0.6238 0.6484 0.000 0.616 0.160 0.020 0.144 NA
#> SRR1202006 2 0.5009 0.7184 0.000 0.664 0.252 0.020 0.008 NA
#> SRR1202088 3 0.4122 0.7031 0.000 0.160 0.764 0.020 0.000 NA
#> SRR1202087 5 0.4737 0.6312 0.000 0.020 0.008 0.064 0.716 NA
#> SRR1202093 2 0.4123 0.8991 0.000 0.772 0.124 0.016 0.000 NA
#> SRR1202092 5 0.4062 0.6886 0.000 0.012 0.000 0.004 0.640 NA
#> SRR1202288 5 0.3636 0.7111 0.000 0.000 0.000 0.004 0.676 NA
#> SRR1202289 2 0.3818 0.9029 0.000 0.784 0.128 0.004 0.000 NA
#> SRR1202299 2 0.2135 0.8967 0.000 0.872 0.128 0.000 0.000 NA
#> SRR1202298 2 0.5787 0.0328 0.000 0.480 0.000 0.000 0.196 NA
#> SRR1202303 3 0.3656 0.7983 0.000 0.012 0.808 0.072 0.000 NA
#> SRR1202372 2 0.2135 0.8967 0.000 0.872 0.128 0.000 0.000 NA
#> SRR1202371 5 0.3738 0.7135 0.000 0.004 0.000 0.004 0.680 NA
#> SRR1202563 5 0.2896 0.7545 0.000 0.000 0.000 0.016 0.824 NA
#> SRR1202565 3 0.3483 0.7672 0.000 0.144 0.808 0.012 0.000 NA
#> SRR1202564 3 0.3483 0.7672 0.000 0.144 0.808 0.012 0.000 NA
#> SRR1202649 5 0.3054 0.7561 0.000 0.000 0.000 0.036 0.828 NA
#> SRR1202650 5 0.2445 0.7652 0.000 0.004 0.000 0.008 0.868 NA
#> SRR1202651 2 0.4471 0.7369 0.000 0.688 0.256 0.016 0.000 NA
#> SRR1202843 1 0.0146 0.9141 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1202844 1 0.0000 0.9144 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1202845 5 0.1429 0.7670 0.000 0.004 0.000 0.004 0.940 NA
#> SRR1202847 2 0.5248 0.7142 0.000 0.656 0.248 0.020 0.020 NA
#> SRR1202846 2 0.5248 0.7142 0.000 0.656 0.248 0.020 0.020 NA
#> SRR1202945 1 0.0458 0.9156 0.984 0.000 0.000 0.000 0.000 NA
#> SRR1202949 1 0.3470 0.8691 0.792 0.012 0.000 0.020 0.000 NA
#> SRR1202977 1 0.3219 0.8811 0.820 0.012 0.000 0.020 0.000 NA
#> SRR1202978 1 0.0000 0.9144 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1202979 1 0.1219 0.9131 0.948 0.004 0.000 0.000 0.000 NA
#> SRR1202990 1 0.3470 0.8691 0.792 0.012 0.000 0.020 0.000 NA
#> SRR1202999 1 0.3436 0.8703 0.796 0.012 0.000 0.020 0.000 NA
#> SRR1203005 1 0.0000 0.9144 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203006 1 0.0000 0.9144 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203007 1 0.2405 0.8987 0.880 0.004 0.000 0.016 0.000 NA
#> SRR1203009 1 0.3436 0.8710 0.796 0.012 0.000 0.020 0.000 NA
#> SRR1203008 1 0.3470 0.8691 0.792 0.012 0.000 0.020 0.000 NA
#> SRR1203010 1 0.3503 0.8691 0.788 0.012 0.000 0.020 0.000 NA
#> SRR1203011 1 0.3219 0.8786 0.808 0.008 0.000 0.016 0.000 NA
#> SRR1203025 1 0.3147 0.8800 0.816 0.008 0.000 0.016 0.000 NA
#> SRR1203026 1 0.3503 0.8691 0.788 0.012 0.000 0.020 0.000 NA
#> SRR1203027 1 0.1285 0.9128 0.944 0.004 0.000 0.000 0.000 NA
#> SRR1203061 1 0.0632 0.9151 0.976 0.000 0.000 0.000 0.000 NA
#> SRR1203089 1 0.0260 0.9149 0.992 0.000 0.000 0.000 0.000 NA
#> SRR1203125 1 0.0260 0.9155 0.992 0.000 0.000 0.000 0.000 NA
#> SRR1203128 1 0.0146 0.9138 0.996 0.000 0.000 0.004 0.000 NA
#> SRR1203129 1 0.0146 0.9138 0.996 0.000 0.000 0.004 0.000 NA
#> SRR1203130 1 0.0146 0.9138 0.996 0.000 0.000 0.004 0.000 NA
#> SRR1203132 3 0.0713 0.8802 0.000 0.000 0.972 0.000 0.000 NA
#> SRR1203131 5 0.0547 0.7533 0.000 0.000 0.000 0.020 0.980 NA
#> SRR1203133 1 0.0146 0.9138 0.996 0.000 0.000 0.004 0.000 NA
#> SRR1203138 1 0.2957 0.8871 0.836 0.008 0.000 0.016 0.000 NA
#> SRR1203760 1 0.0146 0.9138 0.996 0.000 0.000 0.004 0.000 NA
#> SRR1203761 1 0.0291 0.9144 0.992 0.000 0.000 0.004 0.000 NA
#> SRR1203770 1 0.0000 0.9144 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203771 1 0.3503 0.8691 0.788 0.012 0.000 0.020 0.000 NA
#> SRR1203772 1 0.3470 0.8703 0.792 0.012 0.000 0.020 0.000 NA
#> SRR1203773 1 0.0146 0.9138 0.996 0.000 0.000 0.004 0.000 NA
#> SRR1203774 1 0.3338 0.8733 0.800 0.008 0.000 0.020 0.000 NA
#> SRR1203775 1 0.3232 0.8800 0.812 0.008 0.000 0.020 0.000 NA
#> SRR1203800 1 0.3470 0.8691 0.792 0.012 0.000 0.020 0.000 NA
#> SRR1203801 1 0.0146 0.9138 0.996 0.000 0.000 0.004 0.000 NA
#> SRR1203802 1 0.0146 0.9141 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1203803 1 0.0146 0.9138 0.996 0.000 0.000 0.004 0.000 NA
#> SRR1203804 1 0.3470 0.8691 0.792 0.012 0.000 0.020 0.000 NA
#> SRR1203805 1 0.3470 0.8691 0.792 0.012 0.000 0.020 0.000 NA
#> SRR1203806 1 0.0146 0.9141 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1203807 1 0.0508 0.9154 0.984 0.000 0.000 0.004 0.000 NA
#> SRR1203808 1 0.0146 0.9138 0.996 0.000 0.000 0.004 0.000 NA
#> SRR1203811 1 0.0146 0.9138 0.996 0.000 0.000 0.004 0.000 NA
#> SRR1203812 1 0.3470 0.8691 0.792 0.012 0.000 0.020 0.000 NA
#> SRR1203813 1 0.3406 0.8713 0.792 0.008 0.000 0.020 0.000 NA
#> SRR1203814 1 0.0458 0.9155 0.984 0.000 0.000 0.000 0.000 NA
#> SRR1203815 1 0.0865 0.9149 0.964 0.000 0.000 0.000 0.000 NA
#> SRR1203816 1 0.0458 0.9156 0.984 0.000 0.000 0.000 0.000 NA
#> SRR1203817 1 0.0458 0.9154 0.984 0.000 0.000 0.000 0.000 NA
#> SRR1203818 1 0.3436 0.8703 0.796 0.012 0.000 0.020 0.000 NA
#> SRR1203819 1 0.0000 0.9144 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203822 1 0.0146 0.9138 0.996 0.000 0.000 0.004 0.000 NA
#> SRR1203823 1 0.1065 0.9147 0.964 0.008 0.000 0.008 0.000 NA
#> SRR1203824 1 0.0632 0.9158 0.976 0.000 0.000 0.000 0.000 NA
#> SRR1203825 1 0.1477 0.9115 0.940 0.008 0.000 0.004 0.000 NA
#> SRR1203826 1 0.3257 0.8800 0.816 0.012 0.000 0.020 0.000 NA
#> SRR1203827 1 0.5741 0.6333 0.604 0.084 0.000 0.060 0.000 NA
#> SRR1203828 1 0.3338 0.8733 0.800 0.008 0.000 0.020 0.000 NA
#> SRR1203829 1 0.0000 0.9144 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203830 1 0.0146 0.9141 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1203831 1 0.3470 0.8691 0.792 0.012 0.000 0.020 0.000 NA
#> SRR1203832 1 0.3470 0.8691 0.792 0.012 0.000 0.020 0.000 NA
#> SRR1203833 1 0.2611 0.8956 0.864 0.008 0.000 0.012 0.000 NA
#> SRR1203834 1 0.0291 0.9144 0.992 0.000 0.000 0.004 0.000 NA
#> SRR1203835 1 0.0146 0.9138 0.996 0.000 0.000 0.004 0.000 NA
#> SRR1203836 1 0.0291 0.9144 0.992 0.000 0.000 0.004 0.000 NA
#> SRR1203837 1 0.2834 0.8902 0.848 0.008 0.000 0.016 0.000 NA
#> SRR1203838 1 0.0777 0.9153 0.972 0.000 0.000 0.004 0.000 NA
#> SRR1203839 1 0.0146 0.9141 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1203842 1 0.5745 0.6354 0.608 0.088 0.000 0.060 0.000 NA
#> SRR1203843 1 0.0291 0.9144 0.992 0.000 0.000 0.004 0.000 NA
#> SRR1203845 2 0.4597 0.7992 0.000 0.728 0.188 0.020 0.008 NA
#> SRR1203844 5 0.4073 0.7230 0.000 0.028 0.000 0.016 0.732 NA
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["MAD", "skmeans"]
# you can also extract it by
# res = res_list["MAD:skmeans"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'MAD' method.
#> Subgroups are detected by 'skmeans' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 4.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 0.988 0.995 0.4029 0.598 0.598
#> 3 3 0.950 0.931 0.970 0.6356 0.726 0.548
#> 4 4 0.953 0.920 0.966 0.1260 0.888 0.683
#> 5 5 0.852 0.779 0.899 0.0361 0.951 0.818
#> 6 6 0.820 0.718 0.849 0.0305 0.971 0.881
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 4
#> attr(,"optional")
#> [1] 2 3
There is also optional best \(k\) = 2 3 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0.000 0.996 0.000 1.000
#> SRR1201590 2 0.000 0.996 0.000 1.000
#> SRR1201593 2 0.000 0.996 0.000 1.000
#> SRR1201592 2 0.000 0.996 0.000 1.000
#> SRR1201617 2 0.000 0.996 0.000 1.000
#> SRR1201616 2 0.000 0.996 0.000 1.000
#> SRR1201619 2 0.000 0.996 0.000 1.000
#> SRR1201618 2 0.000 0.996 0.000 1.000
#> SRR1201620 2 0.000 0.996 0.000 1.000
#> SRR1201621 2 0.000 0.996 0.000 1.000
#> SRR1201623 2 0.000 0.996 0.000 1.000
#> SRR1201622 2 0.000 0.996 0.000 1.000
#> SRR1201624 1 0.563 0.846 0.868 0.132
#> SRR1201625 2 0.000 0.996 0.000 1.000
#> SRR1201626 1 0.000 0.991 1.000 0.000
#> SRR1201627 2 0.000 0.996 0.000 1.000
#> SRR1201628 2 0.000 0.996 0.000 1.000
#> SRR1201629 2 0.000 0.996 0.000 1.000
#> SRR1201630 2 0.000 0.996 0.000 1.000
#> SRR1201631 2 0.000 0.996 0.000 1.000
#> SRR1201641 2 0.000 0.996 0.000 1.000
#> SRR1201640 2 0.000 0.996 0.000 1.000
#> SRR1201643 2 0.000 0.996 0.000 1.000
#> SRR1201644 2 0.000 0.996 0.000 1.000
#> SRR1201661 2 0.000 0.996 0.000 1.000
#> SRR1201662 2 0.000 0.996 0.000 1.000
#> SRR1201663 2 0.000 0.996 0.000 1.000
#> SRR1201664 2 0.000 0.996 0.000 1.000
#> SRR1201665 2 0.000 0.996 0.000 1.000
#> SRR1201666 2 0.000 0.996 0.000 1.000
#> SRR1201667 2 0.000 0.996 0.000 1.000
#> SRR1201668 2 0.000 0.996 0.000 1.000
#> SRR1201670 2 0.000 0.996 0.000 1.000
#> SRR1201669 2 0.000 0.996 0.000 1.000
#> SRR1201673 2 0.000 0.996 0.000 1.000
#> SRR1201672 2 0.000 0.996 0.000 1.000
#> SRR1201671 2 0.000 0.996 0.000 1.000
#> SRR1201677 2 0.000 0.996 0.000 1.000
#> SRR1201676 2 0.000 0.996 0.000 1.000
#> SRR1201675 2 0.000 0.996 0.000 1.000
#> SRR1201674 2 0.000 0.996 0.000 1.000
#> SRR1201678 2 0.000 0.996 0.000 1.000
#> SRR1201682 2 0.000 0.996 0.000 1.000
#> SRR1201683 2 0.000 0.996 0.000 1.000
#> SRR1201680 2 0.000 0.996 0.000 1.000
#> SRR1201681 2 0.000 0.996 0.000 1.000
#> SRR1201679 2 0.000 0.996 0.000 1.000
#> SRR1201686 2 0.000 0.996 0.000 1.000
#> SRR1201687 2 0.000 0.996 0.000 1.000
#> SRR1201688 2 0.000 0.996 0.000 1.000
#> SRR1201689 2 0.000 0.996 0.000 1.000
#> SRR1201685 1 0.595 0.831 0.856 0.144
#> SRR1201692 2 0.000 0.996 0.000 1.000
#> SRR1201691 2 0.000 0.996 0.000 1.000
#> SRR1201690 2 0.000 0.996 0.000 1.000
#> SRR1201696 2 0.000 0.996 0.000 1.000
#> SRR1201695 2 0.000 0.996 0.000 1.000
#> SRR1201694 2 0.000 0.996 0.000 1.000
#> SRR1201693 2 0.000 0.996 0.000 1.000
#> SRR1201697 2 0.000 0.996 0.000 1.000
#> SRR1201698 2 0.000 0.996 0.000 1.000
#> SRR1201700 2 0.000 0.996 0.000 1.000
#> SRR1201708 2 0.000 0.996 0.000 1.000
#> SRR1201707 2 0.000 0.996 0.000 1.000
#> SRR1201706 2 0.000 0.996 0.000 1.000
#> SRR1201702 2 0.000 0.996 0.000 1.000
#> SRR1201705 2 0.000 0.996 0.000 1.000
#> SRR1201701 2 0.000 0.996 0.000 1.000
#> SRR1201704 2 0.000 0.996 0.000 1.000
#> SRR1201703 2 0.000 0.996 0.000 1.000
#> SRR1201716 2 0.000 0.996 0.000 1.000
#> SRR1201715 2 0.000 0.996 0.000 1.000
#> SRR1201717 2 0.000 0.996 0.000 1.000
#> SRR1201712 2 0.000 0.996 0.000 1.000
#> SRR1201709 2 0.000 0.996 0.000 1.000
#> SRR1201711 2 0.000 0.996 0.000 1.000
#> SRR1201714 2 0.000 0.996 0.000 1.000
#> SRR1201713 2 0.000 0.996 0.000 1.000
#> SRR1201710 2 0.000 0.996 0.000 1.000
#> SRR1201719 2 0.000 0.996 0.000 1.000
#> SRR1201718 2 0.000 0.996 0.000 1.000
#> SRR1201721 2 0.000 0.996 0.000 1.000
#> SRR1201720 2 0.000 0.996 0.000 1.000
#> SRR1201723 2 0.000 0.996 0.000 1.000
#> SRR1201722 2 0.000 0.996 0.000 1.000
#> SRR1201725 2 0.000 0.996 0.000 1.000
#> SRR1201724 2 0.000 0.996 0.000 1.000
#> SRR1201726 2 0.000 0.996 0.000 1.000
#> SRR1201727 2 0.000 0.996 0.000 1.000
#> SRR1201731 2 0.000 0.996 0.000 1.000
#> SRR1201730 2 0.000 0.996 0.000 1.000
#> SRR1201734 2 0.000 0.996 0.000 1.000
#> SRR1201733 2 0.000 0.996 0.000 1.000
#> SRR1201736 2 0.000 0.996 0.000 1.000
#> SRR1201737 2 0.000 0.996 0.000 1.000
#> SRR1201739 2 0.000 0.996 0.000 1.000
#> SRR1201738 2 0.000 0.996 0.000 1.000
#> SRR1201742 2 0.000 0.996 0.000 1.000
#> SRR1201743 2 0.000 0.996 0.000 1.000
#> SRR1201745 2 0.000 0.996 0.000 1.000
#> SRR1201744 1 0.966 0.355 0.608 0.392
#> SRR1201749 2 0.000 0.996 0.000 1.000
#> SRR1201750 2 0.000 0.996 0.000 1.000
#> SRR1201752 2 0.000 0.996 0.000 1.000
#> SRR1201751 2 0.000 0.996 0.000 1.000
#> SRR1201754 2 0.000 0.996 0.000 1.000
#> SRR1201753 2 0.000 0.996 0.000 1.000
#> SRR1201758 1 0.000 0.991 1.000 0.000
#> SRR1201759 2 0.000 0.996 0.000 1.000
#> SRR1201760 2 0.000 0.996 0.000 1.000
#> SRR1201761 2 0.000 0.996 0.000 1.000
#> SRR1201763 2 0.000 0.996 0.000 1.000
#> SRR1201762 1 0.000 0.991 1.000 0.000
#> SRR1201764 2 0.722 0.750 0.200 0.800
#> SRR1201766 2 0.000 0.996 0.000 1.000
#> SRR1201768 2 0.000 0.996 0.000 1.000
#> SRR1201769 2 0.000 0.996 0.000 1.000
#> SRR1201767 2 0.000 0.996 0.000 1.000
#> SRR1201770 2 0.000 0.996 0.000 1.000
#> SRR1201771 2 0.000 0.996 0.000 1.000
#> SRR1201772 2 0.000 0.996 0.000 1.000
#> SRR1201773 2 0.000 0.996 0.000 1.000
#> SRR1201774 2 0.000 0.996 0.000 1.000
#> SRR1201786 2 0.000 0.996 0.000 1.000
#> SRR1201784 2 0.000 0.996 0.000 1.000
#> SRR1201785 2 0.000 0.996 0.000 1.000
#> SRR1201778 2 0.722 0.750 0.200 0.800
#> SRR1201779 2 0.000 0.996 0.000 1.000
#> SRR1201781 2 0.000 0.996 0.000 1.000
#> SRR1201780 2 0.000 0.996 0.000 1.000
#> SRR1201783 2 0.000 0.996 0.000 1.000
#> SRR1201782 2 0.000 0.996 0.000 1.000
#> SRR1201798 2 0.000 0.996 0.000 1.000
#> SRR1201797 2 0.000 0.996 0.000 1.000
#> SRR1201796 2 0.000 0.996 0.000 1.000
#> SRR1201795 2 0.000 0.996 0.000 1.000
#> SRR1201799 2 0.000 0.996 0.000 1.000
#> SRR1201794 2 0.000 0.996 0.000 1.000
#> SRR1201793 2 0.000 0.996 0.000 1.000
#> SRR1201792 2 0.000 0.996 0.000 1.000
#> SRR1201791 2 0.000 0.996 0.000 1.000
#> SRR1201807 2 0.000 0.996 0.000 1.000
#> SRR1201808 2 0.000 0.996 0.000 1.000
#> SRR1201803 2 0.000 0.996 0.000 1.000
#> SRR1201804 2 0.000 0.996 0.000 1.000
#> SRR1201805 2 0.000 0.996 0.000 1.000
#> SRR1201806 2 0.000 0.996 0.000 1.000
#> SRR1201801 2 0.000 0.996 0.000 1.000
#> SRR1201802 2 0.000 0.996 0.000 1.000
#> SRR1201800 2 0.000 0.996 0.000 1.000
#> SRR1201814 2 0.000 0.996 0.000 1.000
#> SRR1201816 2 0.000 0.996 0.000 1.000
#> SRR1201815 2 0.000 0.996 0.000 1.000
#> SRR1201819 2 0.000 0.996 0.000 1.000
#> SRR1201820 2 0.000 0.996 0.000 1.000
#> SRR1201813 2 0.000 0.996 0.000 1.000
#> SRR1201817 2 0.000 0.996 0.000 1.000
#> SRR1201818 2 0.000 0.996 0.000 1.000
#> SRR1201825 2 0.000 0.996 0.000 1.000
#> SRR1201827 2 0.000 0.996 0.000 1.000
#> SRR1201828 2 0.000 0.996 0.000 1.000
#> SRR1201826 2 0.000 0.996 0.000 1.000
#> SRR1201829 2 0.000 0.996 0.000 1.000
#> SRR1201830 2 0.000 0.996 0.000 1.000
#> SRR1201831 2 0.000 0.996 0.000 1.000
#> SRR1201832 2 0.000 0.996 0.000 1.000
#> SRR1201833 2 0.000 0.996 0.000 1.000
#> SRR1201865 2 0.000 0.996 0.000 1.000
#> SRR1201866 2 0.000 0.996 0.000 1.000
#> SRR1201867 2 0.000 0.996 0.000 1.000
#> SRR1201861 2 0.000 0.996 0.000 1.000
#> SRR1201862 2 0.000 0.996 0.000 1.000
#> SRR1201863 2 0.000 0.996 0.000 1.000
#> SRR1201859 2 0.584 0.837 0.140 0.860
#> SRR1201864 2 0.000 0.996 0.000 1.000
#> SRR1201860 2 0.000 0.996 0.000 1.000
#> SRR1201873 2 0.000 0.996 0.000 1.000
#> SRR1201871 2 0.000 0.996 0.000 1.000
#> SRR1201872 2 0.000 0.996 0.000 1.000
#> SRR1201980 2 0.000 0.996 0.000 1.000
#> SRR1201979 2 0.000 0.996 0.000 1.000
#> SRR1201982 2 0.000 0.996 0.000 1.000
#> SRR1201981 2 0.000 0.996 0.000 1.000
#> SRR1201998 2 0.000 0.996 0.000 1.000
#> SRR1201996 2 0.000 0.996 0.000 1.000
#> SRR1201997 2 0.000 0.996 0.000 1.000
#> SRR1202005 2 0.000 0.996 0.000 1.000
#> SRR1202006 2 0.000 0.996 0.000 1.000
#> SRR1202088 2 0.000 0.996 0.000 1.000
#> SRR1202087 2 0.000 0.996 0.000 1.000
#> SRR1202093 2 0.000 0.996 0.000 1.000
#> SRR1202092 2 0.000 0.996 0.000 1.000
#> SRR1202288 2 0.000 0.996 0.000 1.000
#> SRR1202289 2 0.000 0.996 0.000 1.000
#> SRR1202299 2 0.000 0.996 0.000 1.000
#> SRR1202298 2 0.000 0.996 0.000 1.000
#> SRR1202303 2 0.000 0.996 0.000 1.000
#> SRR1202372 2 0.000 0.996 0.000 1.000
#> SRR1202371 2 0.000 0.996 0.000 1.000
#> SRR1202563 2 0.163 0.972 0.024 0.976
#> SRR1202565 2 0.000 0.996 0.000 1.000
#> SRR1202564 2 0.000 0.996 0.000 1.000
#> SRR1202649 2 0.714 0.757 0.196 0.804
#> SRR1202650 2 0.000 0.996 0.000 1.000
#> SRR1202651 2 0.000 0.996 0.000 1.000
#> SRR1202843 1 0.000 0.991 1.000 0.000
#> SRR1202844 1 0.000 0.991 1.000 0.000
#> SRR1202845 2 0.000 0.996 0.000 1.000
#> SRR1202847 2 0.000 0.996 0.000 1.000
#> SRR1202846 2 0.000 0.996 0.000 1.000
#> SRR1202945 1 0.000 0.991 1.000 0.000
#> SRR1202949 1 0.000 0.991 1.000 0.000
#> SRR1202977 1 0.000 0.991 1.000 0.000
#> SRR1202978 1 0.000 0.991 1.000 0.000
#> SRR1202979 1 0.000 0.991 1.000 0.000
#> SRR1202990 1 0.000 0.991 1.000 0.000
#> SRR1202999 1 0.000 0.991 1.000 0.000
#> SRR1203005 1 0.000 0.991 1.000 0.000
#> SRR1203006 1 0.000 0.991 1.000 0.000
#> SRR1203007 1 0.000 0.991 1.000 0.000
#> SRR1203009 1 0.000 0.991 1.000 0.000
#> SRR1203008 1 0.000 0.991 1.000 0.000
#> SRR1203010 1 0.000 0.991 1.000 0.000
#> SRR1203011 1 0.000 0.991 1.000 0.000
#> SRR1203025 1 0.000 0.991 1.000 0.000
#> SRR1203026 1 0.000 0.991 1.000 0.000
#> SRR1203027 1 0.000 0.991 1.000 0.000
#> SRR1203061 1 0.000 0.991 1.000 0.000
#> SRR1203089 1 0.000 0.991 1.000 0.000
#> SRR1203125 1 0.000 0.991 1.000 0.000
#> SRR1203128 1 0.000 0.991 1.000 0.000
#> SRR1203129 1 0.000 0.991 1.000 0.000
#> SRR1203130 1 0.000 0.991 1.000 0.000
#> SRR1203132 2 0.000 0.996 0.000 1.000
#> SRR1203131 2 0.000 0.996 0.000 1.000
#> SRR1203133 1 0.000 0.991 1.000 0.000
#> SRR1203138 1 0.000 0.991 1.000 0.000
#> SRR1203760 1 0.000 0.991 1.000 0.000
#> SRR1203761 1 0.000 0.991 1.000 0.000
#> SRR1203770 1 0.000 0.991 1.000 0.000
#> SRR1203771 1 0.000 0.991 1.000 0.000
#> SRR1203772 1 0.000 0.991 1.000 0.000
#> SRR1203773 1 0.000 0.991 1.000 0.000
#> SRR1203774 1 0.000 0.991 1.000 0.000
#> SRR1203775 1 0.000 0.991 1.000 0.000
#> SRR1203800 1 0.000 0.991 1.000 0.000
#> SRR1203801 1 0.000 0.991 1.000 0.000
#> SRR1203802 1 0.000 0.991 1.000 0.000
#> SRR1203803 1 0.000 0.991 1.000 0.000
#> SRR1203804 1 0.000 0.991 1.000 0.000
#> SRR1203805 1 0.000 0.991 1.000 0.000
#> SRR1203806 1 0.000 0.991 1.000 0.000
#> SRR1203807 1 0.000 0.991 1.000 0.000
#> SRR1203808 1 0.000 0.991 1.000 0.000
#> SRR1203811 1 0.000 0.991 1.000 0.000
#> SRR1203812 1 0.000 0.991 1.000 0.000
#> SRR1203813 1 0.000 0.991 1.000 0.000
#> SRR1203814 1 0.000 0.991 1.000 0.000
#> SRR1203815 1 0.000 0.991 1.000 0.000
#> SRR1203816 1 0.000 0.991 1.000 0.000
#> SRR1203817 1 0.000 0.991 1.000 0.000
#> SRR1203818 1 0.000 0.991 1.000 0.000
#> SRR1203819 1 0.000 0.991 1.000 0.000
#> SRR1203822 1 0.000 0.991 1.000 0.000
#> SRR1203823 1 0.000 0.991 1.000 0.000
#> SRR1203824 1 0.000 0.991 1.000 0.000
#> SRR1203825 1 0.000 0.991 1.000 0.000
#> SRR1203826 1 0.000 0.991 1.000 0.000
#> SRR1203827 1 0.000 0.991 1.000 0.000
#> SRR1203828 1 0.000 0.991 1.000 0.000
#> SRR1203829 1 0.000 0.991 1.000 0.000
#> SRR1203830 1 0.000 0.991 1.000 0.000
#> SRR1203831 1 0.000 0.991 1.000 0.000
#> SRR1203832 1 0.000 0.991 1.000 0.000
#> SRR1203833 1 0.000 0.991 1.000 0.000
#> SRR1203834 1 0.000 0.991 1.000 0.000
#> SRR1203835 1 0.000 0.991 1.000 0.000
#> SRR1203836 1 0.000 0.991 1.000 0.000
#> SRR1203837 1 0.000 0.991 1.000 0.000
#> SRR1203838 1 0.000 0.991 1.000 0.000
#> SRR1203839 1 0.000 0.991 1.000 0.000
#> SRR1203842 1 0.000 0.991 1.000 0.000
#> SRR1203843 1 0.000 0.991 1.000 0.000
#> SRR1203845 2 0.000 0.996 0.000 1.000
#> SRR1203844 2 0.000 0.996 0.000 1.000
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201590 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1201593 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201592 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1201617 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201616 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1201619 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201618 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1201620 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1201621 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201623 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201622 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1201624 2 0.4915 0.758 0.184 0.804 0.012
#> SRR1201625 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201626 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1201627 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201628 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1201629 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201630 3 0.6302 0.103 0.000 0.480 0.520
#> SRR1201631 2 0.5098 0.648 0.000 0.752 0.248
#> SRR1201641 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201640 2 0.4796 0.715 0.000 0.780 0.220
#> SRR1201643 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1201644 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201661 3 0.6154 0.338 0.000 0.408 0.592
#> SRR1201662 2 0.6008 0.367 0.000 0.628 0.372
#> SRR1201663 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1201664 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201665 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1201666 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201667 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201668 2 0.0892 0.957 0.000 0.980 0.020
#> SRR1201670 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201669 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201673 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201672 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201671 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1201677 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201676 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201675 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201674 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201678 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201682 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201683 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201680 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201681 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201679 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1201686 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201687 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201688 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201689 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201685 2 0.4861 0.765 0.180 0.808 0.012
#> SRR1201692 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201691 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201690 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1201696 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201695 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201694 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201693 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201697 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201698 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201700 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1201708 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201707 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201706 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201702 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201705 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201701 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201704 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201703 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201716 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201715 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201717 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201712 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201709 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1201711 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201714 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201713 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201710 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201719 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201718 2 0.3941 0.795 0.000 0.844 0.156
#> SRR1201721 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201720 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1201723 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201722 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1201725 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201724 2 0.1860 0.927 0.000 0.948 0.052
#> SRR1201726 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1201727 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201731 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201730 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1201734 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201733 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1201736 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1201737 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201739 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201738 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1201742 3 0.0237 0.940 0.000 0.004 0.996
#> SRR1201743 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201745 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201744 3 0.5591 0.559 0.304 0.000 0.696
#> SRR1201749 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1201750 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201752 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201751 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1201754 3 0.4605 0.746 0.000 0.204 0.796
#> SRR1201753 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1201758 1 0.0237 0.996 0.996 0.000 0.004
#> SRR1201759 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201760 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1201761 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201763 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201762 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1201764 2 0.3989 0.839 0.124 0.864 0.012
#> SRR1201766 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1201768 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201769 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201767 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201770 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201771 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201772 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201773 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201774 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201786 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201784 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201785 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201778 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1201779 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201781 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201780 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201783 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201782 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201798 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201797 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201796 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201795 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201799 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201794 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201793 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201792 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201791 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1201807 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201808 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201803 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201804 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201805 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201806 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201801 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201802 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201800 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1201814 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201816 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201815 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201819 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201820 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201813 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1201817 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201818 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1201825 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1201827 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201828 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201826 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1201829 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201830 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201831 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201832 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201833 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201865 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201866 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201867 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201861 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201862 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201863 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201859 2 0.3722 0.875 0.088 0.888 0.024
#> SRR1201864 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201860 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201873 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201871 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1201872 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201980 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201979 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1201982 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201981 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1201998 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1201996 2 0.5650 0.541 0.000 0.688 0.312
#> SRR1201997 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1202005 3 0.6111 0.398 0.000 0.396 0.604
#> SRR1202006 3 0.6126 0.388 0.000 0.400 0.600
#> SRR1202088 2 0.4452 0.746 0.000 0.808 0.192
#> SRR1202087 2 0.4452 0.746 0.000 0.808 0.192
#> SRR1202093 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1202092 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1202288 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1202289 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1202299 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1202298 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1202303 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1202372 3 0.0592 0.947 0.000 0.012 0.988
#> SRR1202371 3 0.0000 0.941 0.000 0.000 1.000
#> SRR1202563 3 0.6330 0.365 0.004 0.396 0.600
#> SRR1202565 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1202564 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1202649 3 0.5850 0.718 0.188 0.040 0.772
#> SRR1202650 3 0.6168 0.327 0.000 0.412 0.588
#> SRR1202651 3 0.6126 0.388 0.000 0.400 0.600
#> SRR1202843 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202844 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202845 3 0.5882 0.483 0.000 0.348 0.652
#> SRR1202847 2 0.6215 0.195 0.000 0.572 0.428
#> SRR1202846 2 0.6215 0.195 0.000 0.572 0.428
#> SRR1202945 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202949 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202977 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202978 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202979 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202990 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202999 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203005 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203006 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203007 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203009 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203008 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203010 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203011 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203025 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203026 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203027 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203061 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203089 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203125 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203128 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203129 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203130 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203132 2 0.0000 0.967 0.000 1.000 0.000
#> SRR1203131 2 0.0592 0.960 0.000 0.988 0.012
#> SRR1203133 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203138 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203760 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203761 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203770 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203771 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203772 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203773 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203774 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203775 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203800 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203801 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203802 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203803 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203804 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203805 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203806 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203807 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203808 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203811 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203812 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203813 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203814 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203815 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203816 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203817 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203818 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203819 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203822 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203823 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203824 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203825 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203826 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203827 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203828 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203829 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203830 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203831 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203832 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203833 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203834 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203835 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203836 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203837 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203838 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203839 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203842 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203843 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203845 3 0.5678 0.568 0.000 0.316 0.684
#> SRR1203844 3 0.2878 0.862 0.000 0.096 0.904
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201590 4 0.4500 0.5680 0.000 0.316 0.000 0.684
#> SRR1201593 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201592 2 0.1792 0.8855 0.000 0.932 0.000 0.068
#> SRR1201617 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201616 2 0.3024 0.7959 0.000 0.852 0.000 0.148
#> SRR1201619 2 0.0592 0.9309 0.000 0.984 0.016 0.000
#> SRR1201618 4 0.0469 0.9238 0.000 0.012 0.000 0.988
#> SRR1201620 2 0.4431 0.5333 0.000 0.696 0.000 0.304
#> SRR1201621 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201623 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201622 4 0.0188 0.9253 0.000 0.000 0.004 0.996
#> SRR1201624 4 0.3528 0.7632 0.000 0.000 0.192 0.808
#> SRR1201625 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201626 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1201627 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201628 4 0.0000 0.9249 0.000 0.000 0.000 1.000
#> SRR1201629 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201630 4 0.0336 0.9245 0.000 0.008 0.000 0.992
#> SRR1201631 3 0.4535 0.5612 0.000 0.292 0.704 0.004
#> SRR1201641 3 0.0188 0.9652 0.000 0.000 0.996 0.004
#> SRR1201640 4 0.0592 0.9229 0.000 0.000 0.016 0.984
#> SRR1201643 4 0.0188 0.9255 0.000 0.000 0.004 0.996
#> SRR1201644 3 0.0188 0.9652 0.000 0.000 0.996 0.004
#> SRR1201661 4 0.0524 0.9249 0.000 0.008 0.004 0.988
#> SRR1201662 3 0.4837 0.4365 0.000 0.348 0.648 0.004
#> SRR1201663 4 0.0817 0.9200 0.000 0.000 0.024 0.976
#> SRR1201664 3 0.0592 0.9561 0.000 0.000 0.984 0.016
#> SRR1201665 4 0.0817 0.9196 0.000 0.024 0.000 0.976
#> SRR1201666 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201667 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201668 4 0.0188 0.9253 0.000 0.000 0.004 0.996
#> SRR1201670 3 0.0592 0.9561 0.000 0.000 0.984 0.016
#> SRR1201669 3 0.0592 0.9561 0.000 0.000 0.984 0.016
#> SRR1201673 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201672 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201671 4 0.0336 0.9256 0.000 0.000 0.008 0.992
#> SRR1201677 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201676 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201675 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201674 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201678 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201682 2 0.2216 0.8604 0.000 0.908 0.092 0.000
#> SRR1201683 2 0.2216 0.8604 0.000 0.908 0.092 0.000
#> SRR1201680 2 0.2216 0.8604 0.000 0.908 0.092 0.000
#> SRR1201681 2 0.2216 0.8604 0.000 0.908 0.092 0.000
#> SRR1201679 4 0.3311 0.7918 0.000 0.172 0.000 0.828
#> SRR1201686 3 0.0592 0.9561 0.000 0.000 0.984 0.016
#> SRR1201687 3 0.0592 0.9561 0.000 0.000 0.984 0.016
#> SRR1201688 3 0.0592 0.9561 0.000 0.000 0.984 0.016
#> SRR1201689 3 0.0592 0.9561 0.000 0.000 0.984 0.016
#> SRR1201685 4 0.0188 0.9253 0.000 0.000 0.004 0.996
#> SRR1201692 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201691 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201690 4 0.0188 0.9253 0.000 0.000 0.004 0.996
#> SRR1201696 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201695 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201694 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201693 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201697 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201698 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201700 4 0.2973 0.8222 0.000 0.000 0.144 0.856
#> SRR1201708 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201707 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201706 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201702 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201705 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201701 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201704 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201703 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201716 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201715 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201717 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201712 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201709 4 0.3764 0.7298 0.000 0.000 0.216 0.784
#> SRR1201711 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201714 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201713 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201710 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201719 3 0.0188 0.9652 0.000 0.000 0.996 0.004
#> SRR1201718 3 0.5500 0.0541 0.000 0.016 0.520 0.464
#> SRR1201721 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201720 4 0.1022 0.9167 0.000 0.000 0.032 0.968
#> SRR1201723 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201722 4 0.1022 0.9161 0.000 0.000 0.032 0.968
#> SRR1201725 3 0.0188 0.9652 0.000 0.000 0.996 0.004
#> SRR1201724 4 0.3908 0.7309 0.000 0.004 0.212 0.784
#> SRR1201726 4 0.1022 0.9158 0.000 0.000 0.032 0.968
#> SRR1201727 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201731 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201730 4 0.2530 0.8581 0.000 0.000 0.112 0.888
#> SRR1201734 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201733 2 0.4888 0.2508 0.000 0.588 0.000 0.412
#> SRR1201736 4 0.0592 0.9225 0.000 0.016 0.000 0.984
#> SRR1201737 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201739 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201738 2 0.3074 0.7889 0.000 0.848 0.000 0.152
#> SRR1201742 4 0.0469 0.9238 0.000 0.012 0.000 0.988
#> SRR1201743 2 0.2345 0.8525 0.000 0.900 0.100 0.000
#> SRR1201745 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201744 4 0.1610 0.9114 0.016 0.032 0.000 0.952
#> SRR1201749 4 0.1118 0.9138 0.000 0.036 0.000 0.964
#> SRR1201750 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201752 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201751 4 0.0707 0.9215 0.000 0.000 0.020 0.980
#> SRR1201754 2 0.4277 0.6136 0.000 0.720 0.280 0.000
#> SRR1201753 4 0.1637 0.8980 0.000 0.060 0.000 0.940
#> SRR1201758 1 0.3837 0.7108 0.776 0.000 0.000 0.224
#> SRR1201759 3 0.0592 0.9561 0.000 0.000 0.984 0.016
#> SRR1201760 4 0.0188 0.9254 0.000 0.000 0.004 0.996
#> SRR1201761 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201763 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201762 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1201764 4 0.0188 0.9254 0.000 0.000 0.004 0.996
#> SRR1201766 2 0.0921 0.9225 0.000 0.972 0.000 0.028
#> SRR1201768 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201769 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201767 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201770 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201771 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201772 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201773 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201774 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201786 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201784 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201785 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201778 4 0.2149 0.8778 0.000 0.088 0.000 0.912
#> SRR1201779 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201781 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201780 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201783 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201782 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201798 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201797 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201796 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201795 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201799 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201794 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201793 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201792 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201791 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201807 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201808 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201803 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201804 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201805 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201806 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201801 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201802 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201800 2 0.0592 0.9321 0.000 0.984 0.000 0.016
#> SRR1201814 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201816 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201815 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201819 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201820 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201813 2 0.0188 0.9408 0.000 0.996 0.000 0.004
#> SRR1201817 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201818 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1201825 4 0.0000 0.9249 0.000 0.000 0.000 1.000
#> SRR1201827 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201828 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201826 4 0.0336 0.9256 0.000 0.000 0.008 0.992
#> SRR1201829 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201830 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201831 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201832 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201833 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201865 3 0.0188 0.9654 0.000 0.000 0.996 0.004
#> SRR1201866 3 0.0188 0.9654 0.000 0.000 0.996 0.004
#> SRR1201867 3 0.0188 0.9654 0.000 0.000 0.996 0.004
#> SRR1201861 3 0.0188 0.9654 0.000 0.000 0.996 0.004
#> SRR1201862 3 0.0188 0.9654 0.000 0.000 0.996 0.004
#> SRR1201863 3 0.0188 0.9654 0.000 0.000 0.996 0.004
#> SRR1201859 4 0.0000 0.9249 0.000 0.000 0.000 1.000
#> SRR1201864 3 0.0188 0.9654 0.000 0.000 0.996 0.004
#> SRR1201860 3 0.0188 0.9654 0.000 0.000 0.996 0.004
#> SRR1201873 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201871 4 0.0000 0.9249 0.000 0.000 0.000 1.000
#> SRR1201872 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201980 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201979 4 0.1118 0.9139 0.000 0.000 0.036 0.964
#> SRR1201982 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1201981 4 0.0188 0.9255 0.000 0.000 0.004 0.996
#> SRR1201998 3 0.0188 0.9652 0.000 0.000 0.996 0.004
#> SRR1201996 4 0.1209 0.9168 0.000 0.004 0.032 0.964
#> SRR1201997 3 0.0188 0.9652 0.000 0.000 0.996 0.004
#> SRR1202005 2 0.5060 0.3150 0.000 0.584 0.412 0.004
#> SRR1202006 2 0.5105 0.2579 0.000 0.564 0.432 0.004
#> SRR1202088 3 0.3610 0.7229 0.000 0.200 0.800 0.000
#> SRR1202087 4 0.7563 0.2677 0.000 0.196 0.364 0.440
#> SRR1202093 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1202092 4 0.4522 0.5624 0.000 0.320 0.000 0.680
#> SRR1202288 4 0.2973 0.8243 0.000 0.144 0.000 0.856
#> SRR1202289 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1202299 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1202298 2 0.0336 0.9382 0.000 0.992 0.000 0.008
#> SRR1202303 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1202372 2 0.0000 0.9437 0.000 1.000 0.000 0.000
#> SRR1202371 4 0.2647 0.8492 0.000 0.120 0.000 0.880
#> SRR1202563 4 0.0000 0.9249 0.000 0.000 0.000 1.000
#> SRR1202565 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1202564 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1202649 4 0.0000 0.9249 0.000 0.000 0.000 1.000
#> SRR1202650 4 0.0336 0.9245 0.000 0.008 0.000 0.992
#> SRR1202651 2 0.4925 0.2765 0.000 0.572 0.428 0.000
#> SRR1202843 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1202845 4 0.0707 0.9217 0.000 0.020 0.000 0.980
#> SRR1202847 3 0.5126 0.1590 0.000 0.444 0.552 0.004
#> SRR1202846 3 0.5119 0.1728 0.000 0.440 0.556 0.004
#> SRR1202945 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203132 3 0.0000 0.9676 0.000 0.000 1.000 0.000
#> SRR1203131 4 0.0000 0.9249 0.000 0.000 0.000 1.000
#> SRR1203133 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203827 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203828 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203842 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203843 1 0.0000 0.9970 1.000 0.000 0.000 0.000
#> SRR1203845 2 0.4761 0.5085 0.000 0.664 0.332 0.004
#> SRR1203844 4 0.4877 0.3121 0.000 0.408 0.000 0.592
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201590 4 0.2462 0.5939 0.000 0.112 0.000 0.880 0.008
#> SRR1201593 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201592 4 0.3816 0.4703 0.000 0.304 0.000 0.696 0.000
#> SRR1201617 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201616 4 0.3561 0.5051 0.000 0.260 0.000 0.740 0.000
#> SRR1201619 2 0.1469 0.9029 0.000 0.948 0.036 0.016 0.000
#> SRR1201618 4 0.1915 0.5884 0.000 0.032 0.000 0.928 0.040
#> SRR1201620 4 0.2732 0.5661 0.000 0.160 0.000 0.840 0.000
#> SRR1201621 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1201623 3 0.1197 0.8638 0.000 0.000 0.952 0.000 0.048
#> SRR1201622 5 0.3480 0.5258 0.000 0.000 0.000 0.248 0.752
#> SRR1201624 5 0.1992 0.5710 0.000 0.000 0.032 0.044 0.924
#> SRR1201625 3 0.0162 0.8804 0.000 0.000 0.996 0.000 0.004
#> SRR1201626 1 0.0404 0.9875 0.988 0.000 0.000 0.000 0.012
#> SRR1201627 3 0.0162 0.8804 0.000 0.000 0.996 0.000 0.004
#> SRR1201628 5 0.4565 0.3639 0.000 0.000 0.012 0.408 0.580
#> SRR1201629 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201630 4 0.4045 0.2301 0.000 0.000 0.000 0.644 0.356
#> SRR1201631 3 0.4447 0.7283 0.000 0.080 0.800 0.048 0.072
#> SRR1201641 3 0.2782 0.8070 0.000 0.000 0.880 0.048 0.072
#> SRR1201640 4 0.4425 0.1522 0.000 0.000 0.008 0.600 0.392
#> SRR1201643 4 0.4440 -0.1041 0.000 0.000 0.004 0.528 0.468
#> SRR1201644 3 0.2708 0.8101 0.000 0.000 0.884 0.044 0.072
#> SRR1201661 4 0.3966 0.2958 0.000 0.000 0.000 0.664 0.336
#> SRR1201662 3 0.4717 0.7042 0.000 0.100 0.780 0.048 0.072
#> SRR1201663 5 0.2067 0.5738 0.000 0.000 0.032 0.048 0.920
#> SRR1201664 3 0.4235 0.3648 0.000 0.000 0.576 0.000 0.424
#> SRR1201665 4 0.1845 0.5983 0.000 0.056 0.000 0.928 0.016
#> SRR1201666 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201667 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201668 5 0.2377 0.5313 0.000 0.000 0.000 0.128 0.872
#> SRR1201670 3 0.4227 0.3696 0.000 0.000 0.580 0.000 0.420
#> SRR1201669 3 0.4227 0.3696 0.000 0.000 0.580 0.000 0.420
#> SRR1201673 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201672 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201671 4 0.5467 -0.1616 0.000 0.000 0.064 0.524 0.412
#> SRR1201677 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201676 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201675 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201674 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201678 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201682 2 0.3098 0.7660 0.000 0.836 0.148 0.016 0.000
#> SRR1201683 2 0.3098 0.7660 0.000 0.836 0.148 0.016 0.000
#> SRR1201680 2 0.3098 0.7660 0.000 0.836 0.148 0.016 0.000
#> SRR1201681 2 0.3098 0.7660 0.000 0.836 0.148 0.016 0.000
#> SRR1201679 4 0.1478 0.6006 0.000 0.064 0.000 0.936 0.000
#> SRR1201686 3 0.4249 0.3460 0.000 0.000 0.568 0.000 0.432
#> SRR1201687 3 0.4249 0.3460 0.000 0.000 0.568 0.000 0.432
#> SRR1201688 3 0.4249 0.3460 0.000 0.000 0.568 0.000 0.432
#> SRR1201689 3 0.4249 0.3460 0.000 0.000 0.568 0.000 0.432
#> SRR1201685 5 0.1851 0.5531 0.000 0.000 0.000 0.088 0.912
#> SRR1201692 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201691 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201690 5 0.5068 0.4187 0.000 0.000 0.040 0.388 0.572
#> SRR1201696 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201695 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201694 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201693 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201697 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201698 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201700 5 0.5635 0.5076 0.000 0.000 0.252 0.128 0.620
#> SRR1201708 3 0.0162 0.8804 0.000 0.000 0.996 0.000 0.004
#> SRR1201707 3 0.0162 0.8804 0.000 0.000 0.996 0.000 0.004
#> SRR1201706 3 0.0162 0.8804 0.000 0.000 0.996 0.000 0.004
#> SRR1201702 3 0.0162 0.8804 0.000 0.000 0.996 0.000 0.004
#> SRR1201705 3 0.0162 0.8804 0.000 0.000 0.996 0.000 0.004
#> SRR1201701 3 0.0162 0.8804 0.000 0.000 0.996 0.000 0.004
#> SRR1201704 3 0.0162 0.8804 0.000 0.000 0.996 0.000 0.004
#> SRR1201703 3 0.0162 0.8804 0.000 0.000 0.996 0.000 0.004
#> SRR1201716 3 0.0880 0.8716 0.000 0.000 0.968 0.000 0.032
#> SRR1201715 3 0.0880 0.8716 0.000 0.000 0.968 0.000 0.032
#> SRR1201717 3 0.0880 0.8716 0.000 0.000 0.968 0.000 0.032
#> SRR1201712 3 0.0880 0.8716 0.000 0.000 0.968 0.000 0.032
#> SRR1201709 5 0.3734 0.5426 0.000 0.000 0.168 0.036 0.796
#> SRR1201711 3 0.0880 0.8716 0.000 0.000 0.968 0.000 0.032
#> SRR1201714 3 0.0880 0.8716 0.000 0.000 0.968 0.000 0.032
#> SRR1201713 3 0.0880 0.8716 0.000 0.000 0.968 0.000 0.032
#> SRR1201710 3 0.0880 0.8716 0.000 0.000 0.968 0.000 0.032
#> SRR1201719 3 0.2782 0.8070 0.000 0.000 0.880 0.048 0.072
#> SRR1201718 3 0.6217 0.3165 0.000 0.008 0.584 0.216 0.192
#> SRR1201721 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201720 5 0.6092 0.4548 0.000 0.000 0.180 0.256 0.564
#> SRR1201723 3 0.1732 0.8449 0.000 0.000 0.920 0.000 0.080
#> SRR1201722 5 0.2067 0.5738 0.000 0.000 0.032 0.048 0.920
#> SRR1201725 3 0.2708 0.8101 0.000 0.000 0.884 0.044 0.072
#> SRR1201724 3 0.6915 -0.3263 0.000 0.004 0.388 0.316 0.292
#> SRR1201726 5 0.4349 0.5801 0.000 0.000 0.068 0.176 0.756
#> SRR1201727 3 0.0162 0.8804 0.000 0.000 0.996 0.000 0.004
#> SRR1201731 3 0.0510 0.8755 0.000 0.000 0.984 0.000 0.016
#> SRR1201730 5 0.6333 0.3605 0.000 0.000 0.328 0.176 0.496
#> SRR1201734 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201733 4 0.2852 0.5666 0.000 0.172 0.000 0.828 0.000
#> SRR1201736 4 0.1670 0.5731 0.000 0.012 0.000 0.936 0.052
#> SRR1201737 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201739 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201738 4 0.3816 0.4721 0.000 0.304 0.000 0.696 0.000
#> SRR1201742 4 0.2813 0.5480 0.000 0.024 0.000 0.868 0.108
#> SRR1201743 2 0.3343 0.7319 0.000 0.812 0.172 0.016 0.000
#> SRR1201745 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1201744 4 0.2116 0.5855 0.008 0.028 0.000 0.924 0.040
#> SRR1201749 4 0.1725 0.5828 0.000 0.020 0.000 0.936 0.044
#> SRR1201750 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1201752 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201751 5 0.6387 0.4675 0.000 0.000 0.248 0.236 0.516
#> SRR1201754 2 0.5995 0.3582 0.000 0.576 0.332 0.056 0.036
#> SRR1201753 4 0.1168 0.5671 0.000 0.008 0.000 0.960 0.032
#> SRR1201758 5 0.3849 0.3611 0.232 0.000 0.000 0.016 0.752
#> SRR1201759 3 0.4268 0.3180 0.000 0.000 0.556 0.000 0.444
#> SRR1201760 5 0.4798 0.3806 0.000 0.000 0.024 0.396 0.580
#> SRR1201761 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201763 3 0.0162 0.8804 0.000 0.000 0.996 0.000 0.004
#> SRR1201762 1 0.2127 0.8862 0.892 0.000 0.000 0.000 0.108
#> SRR1201764 5 0.4874 0.4755 0.000 0.000 0.040 0.328 0.632
#> SRR1201766 4 0.4210 0.3264 0.000 0.412 0.000 0.588 0.000
#> SRR1201768 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201769 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201767 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201770 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201771 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201772 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201773 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201774 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201786 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201784 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201785 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201778 4 0.2300 0.5988 0.000 0.072 0.000 0.904 0.024
#> SRR1201779 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201781 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201780 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201783 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201782 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201798 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201797 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201796 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201795 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201799 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201794 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201793 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201792 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1201791 2 0.4161 0.2672 0.000 0.608 0.000 0.392 0.000
#> SRR1201807 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1201808 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1201803 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1201804 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1201805 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1201806 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1201801 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1201802 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1201800 4 0.3999 0.4202 0.000 0.344 0.000 0.656 0.000
#> SRR1201814 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1201816 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1201815 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1201819 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1201820 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1201813 4 0.4305 0.0555 0.000 0.488 0.000 0.512 0.000
#> SRR1201817 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1201818 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1201825 5 0.4182 0.3248 0.000 0.000 0.000 0.400 0.600
#> SRR1201827 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201828 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201826 4 0.5836 -0.2219 0.000 0.000 0.096 0.492 0.412
#> SRR1201829 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201830 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201831 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201832 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201833 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201865 3 0.2130 0.8423 0.000 0.000 0.908 0.012 0.080
#> SRR1201866 3 0.2130 0.8423 0.000 0.000 0.908 0.012 0.080
#> SRR1201867 3 0.2130 0.8423 0.000 0.000 0.908 0.012 0.080
#> SRR1201861 3 0.2130 0.8423 0.000 0.000 0.908 0.012 0.080
#> SRR1201862 3 0.2130 0.8423 0.000 0.000 0.908 0.012 0.080
#> SRR1201863 3 0.2130 0.8423 0.000 0.000 0.908 0.012 0.080
#> SRR1201859 4 0.4262 0.0690 0.000 0.000 0.000 0.560 0.440
#> SRR1201864 3 0.2130 0.8423 0.000 0.000 0.908 0.012 0.080
#> SRR1201860 3 0.2130 0.8423 0.000 0.000 0.908 0.012 0.080
#> SRR1201873 3 0.1197 0.8638 0.000 0.000 0.952 0.000 0.048
#> SRR1201871 5 0.3796 0.4855 0.000 0.000 0.000 0.300 0.700
#> SRR1201872 3 0.1197 0.8638 0.000 0.000 0.952 0.000 0.048
#> SRR1201980 3 0.0000 0.8808 0.000 0.000 1.000 0.000 0.000
#> SRR1201979 5 0.5702 0.4710 0.000 0.000 0.104 0.320 0.576
#> SRR1201982 3 0.2708 0.8101 0.000 0.000 0.884 0.044 0.072
#> SRR1201981 4 0.4980 -0.1933 0.000 0.000 0.028 0.488 0.484
#> SRR1201998 3 0.2708 0.8101 0.000 0.000 0.884 0.044 0.072
#> SRR1201996 4 0.6240 -0.1182 0.000 0.000 0.152 0.488 0.360
#> SRR1201997 3 0.2782 0.8070 0.000 0.000 0.880 0.048 0.072
#> SRR1202005 3 0.6818 0.3676 0.000 0.268 0.560 0.100 0.072
#> SRR1202006 3 0.6163 0.4590 0.000 0.260 0.616 0.052 0.072
#> SRR1202088 3 0.3333 0.6449 0.000 0.208 0.788 0.000 0.004
#> SRR1202087 5 0.7243 0.2932 0.000 0.124 0.292 0.080 0.504
#> SRR1202093 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1202092 4 0.3081 0.5756 0.000 0.156 0.000 0.832 0.012
#> SRR1202288 4 0.2193 0.5984 0.000 0.092 0.000 0.900 0.008
#> SRR1202289 2 0.0000 0.9410 0.000 1.000 0.000 0.000 0.000
#> SRR1202299 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1202298 2 0.4273 0.1557 0.000 0.552 0.000 0.448 0.000
#> SRR1202303 3 0.0162 0.8804 0.000 0.000 0.996 0.000 0.004
#> SRR1202372 2 0.0510 0.9376 0.000 0.984 0.000 0.016 0.000
#> SRR1202371 4 0.1670 0.5991 0.000 0.052 0.000 0.936 0.012
#> SRR1202563 4 0.4015 0.2739 0.000 0.000 0.000 0.652 0.348
#> SRR1202565 3 0.1830 0.8463 0.000 0.000 0.932 0.040 0.028
#> SRR1202564 3 0.1830 0.8463 0.000 0.000 0.932 0.040 0.028
#> SRR1202649 4 0.4219 0.1311 0.000 0.000 0.000 0.584 0.416
#> SRR1202650 4 0.3612 0.3500 0.000 0.000 0.000 0.732 0.268
#> SRR1202651 3 0.5681 0.4363 0.000 0.304 0.616 0.052 0.028
#> SRR1202843 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1202845 4 0.3966 0.3007 0.000 0.000 0.000 0.664 0.336
#> SRR1202847 3 0.5856 0.5328 0.000 0.220 0.660 0.048 0.072
#> SRR1202846 3 0.5829 0.5394 0.000 0.216 0.664 0.048 0.072
#> SRR1202945 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.1403 0.8588 0.000 0.000 0.952 0.024 0.024
#> SRR1203131 5 0.4307 0.1431 0.000 0.000 0.000 0.496 0.504
#> SRR1203133 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203827 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203828 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203842 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203843 1 0.0000 0.9985 1.000 0.000 0.000 0.000 0.000
#> SRR1203845 2 0.6619 0.0298 0.000 0.460 0.416 0.052 0.072
#> SRR1203844 4 0.3789 0.4548 0.000 0.016 0.000 0.760 0.224
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201590 6 0.1806 0.70641 0.000 0.088 0.000 0.004 0.000 0.908
#> SRR1201593 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201592 6 0.3290 0.60844 0.000 0.252 0.000 0.004 0.000 0.744
#> SRR1201617 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201616 6 0.2969 0.63377 0.000 0.224 0.000 0.000 0.000 0.776
#> SRR1201619 2 0.4510 0.79786 0.000 0.764 0.016 0.060 0.132 0.028
#> SRR1201618 6 0.1957 0.67872 0.000 0.008 0.000 0.048 0.024 0.920
#> SRR1201620 6 0.1738 0.70277 0.000 0.052 0.000 0.004 0.016 0.928
#> SRR1201621 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1201623 3 0.2613 0.75844 0.000 0.000 0.848 0.012 0.140 0.000
#> SRR1201622 5 0.5907 0.43649 0.000 0.000 0.004 0.320 0.480 0.196
#> SRR1201624 5 0.4386 0.58158 0.000 0.000 0.020 0.228 0.712 0.040
#> SRR1201625 3 0.0922 0.80747 0.000 0.000 0.968 0.004 0.024 0.004
#> SRR1201626 1 0.3098 0.81453 0.836 0.000 0.000 0.040 0.120 0.004
#> SRR1201627 3 0.0922 0.80747 0.000 0.000 0.968 0.004 0.024 0.004
#> SRR1201628 4 0.5464 0.17155 0.000 0.000 0.020 0.612 0.248 0.120
#> SRR1201629 3 0.0363 0.80684 0.000 0.000 0.988 0.012 0.000 0.000
#> SRR1201630 4 0.4585 0.30027 0.000 0.000 0.000 0.632 0.060 0.308
#> SRR1201631 3 0.5060 0.01179 0.000 0.052 0.492 0.448 0.004 0.004
#> SRR1201641 3 0.4070 0.22115 0.000 0.000 0.568 0.424 0.004 0.004
#> SRR1201640 4 0.3863 0.38815 0.000 0.000 0.020 0.756 0.020 0.204
#> SRR1201643 4 0.4704 0.30779 0.000 0.000 0.008 0.704 0.132 0.156
#> SRR1201644 3 0.3797 0.24972 0.000 0.000 0.580 0.420 0.000 0.000
#> SRR1201661 4 0.3970 0.35142 0.000 0.000 0.000 0.692 0.028 0.280
#> SRR1201662 3 0.5204 -0.03684 0.000 0.064 0.476 0.452 0.004 0.004
#> SRR1201663 5 0.4346 0.57786 0.000 0.000 0.020 0.232 0.712 0.036
#> SRR1201664 3 0.4076 0.48756 0.000 0.000 0.620 0.016 0.364 0.000
#> SRR1201665 6 0.1777 0.70334 0.000 0.044 0.000 0.024 0.004 0.928
#> SRR1201666 2 0.0363 0.87126 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1201667 2 0.0363 0.87126 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1201668 5 0.4728 0.57741 0.000 0.000 0.000 0.176 0.680 0.144
#> SRR1201670 3 0.4168 0.44680 0.000 0.000 0.584 0.016 0.400 0.000
#> SRR1201669 3 0.4168 0.44680 0.000 0.000 0.584 0.016 0.400 0.000
#> SRR1201673 3 0.1682 0.79314 0.000 0.000 0.928 0.020 0.052 0.000
#> SRR1201672 3 0.1682 0.79314 0.000 0.000 0.928 0.020 0.052 0.000
#> SRR1201671 6 0.7224 -0.22466 0.000 0.000 0.112 0.272 0.212 0.404
#> SRR1201677 3 0.1682 0.79314 0.000 0.000 0.928 0.020 0.052 0.000
#> SRR1201676 3 0.1682 0.79314 0.000 0.000 0.928 0.020 0.052 0.000
#> SRR1201675 3 0.1682 0.79314 0.000 0.000 0.928 0.020 0.052 0.000
#> SRR1201674 3 0.1682 0.79314 0.000 0.000 0.928 0.020 0.052 0.000
#> SRR1201678 3 0.1682 0.79314 0.000 0.000 0.928 0.020 0.052 0.000
#> SRR1201682 2 0.6277 0.60594 0.000 0.612 0.172 0.064 0.132 0.020
#> SRR1201683 2 0.6277 0.60594 0.000 0.612 0.172 0.064 0.132 0.020
#> SRR1201680 2 0.6277 0.60594 0.000 0.612 0.172 0.064 0.132 0.020
#> SRR1201681 2 0.6277 0.60594 0.000 0.612 0.172 0.064 0.132 0.020
#> SRR1201679 6 0.2911 0.69241 0.000 0.052 0.000 0.036 0.040 0.872
#> SRR1201686 3 0.4168 0.44680 0.000 0.000 0.584 0.016 0.400 0.000
#> SRR1201687 3 0.4168 0.44680 0.000 0.000 0.584 0.016 0.400 0.000
#> SRR1201688 3 0.4168 0.44680 0.000 0.000 0.584 0.016 0.400 0.000
#> SRR1201689 3 0.4168 0.44680 0.000 0.000 0.584 0.016 0.400 0.000
#> SRR1201685 5 0.4406 0.58114 0.000 0.000 0.000 0.224 0.696 0.080
#> SRR1201692 3 0.0146 0.80807 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1201691 3 0.0146 0.80807 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1201690 4 0.6158 0.00992 0.000 0.000 0.044 0.540 0.272 0.144
#> SRR1201696 3 0.0146 0.80807 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1201695 3 0.0146 0.80807 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1201694 3 0.0146 0.80807 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1201693 3 0.0146 0.80807 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1201697 3 0.0146 0.80807 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1201698 3 0.0146 0.80807 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1201700 4 0.6908 -0.16794 0.000 0.000 0.272 0.396 0.276 0.056
#> SRR1201708 3 0.0146 0.80802 0.000 0.000 0.996 0.000 0.004 0.000
#> SRR1201707 3 0.0146 0.80802 0.000 0.000 0.996 0.000 0.004 0.000
#> SRR1201706 3 0.0146 0.80802 0.000 0.000 0.996 0.000 0.004 0.000
#> SRR1201702 3 0.0146 0.80802 0.000 0.000 0.996 0.000 0.004 0.000
#> SRR1201705 3 0.0146 0.80802 0.000 0.000 0.996 0.000 0.004 0.000
#> SRR1201701 3 0.0146 0.80802 0.000 0.000 0.996 0.000 0.004 0.000
#> SRR1201704 3 0.0146 0.80802 0.000 0.000 0.996 0.000 0.004 0.000
#> SRR1201703 3 0.0146 0.80802 0.000 0.000 0.996 0.000 0.004 0.000
#> SRR1201716 3 0.2165 0.77261 0.000 0.000 0.884 0.008 0.108 0.000
#> SRR1201715 3 0.2165 0.77261 0.000 0.000 0.884 0.008 0.108 0.000
#> SRR1201717 3 0.2165 0.77261 0.000 0.000 0.884 0.008 0.108 0.000
#> SRR1201712 3 0.2165 0.77261 0.000 0.000 0.884 0.008 0.108 0.000
#> SRR1201709 5 0.6360 0.25084 0.000 0.000 0.248 0.240 0.484 0.028
#> SRR1201711 3 0.2165 0.77261 0.000 0.000 0.884 0.008 0.108 0.000
#> SRR1201714 3 0.2165 0.77261 0.000 0.000 0.884 0.008 0.108 0.000
#> SRR1201713 3 0.2165 0.77261 0.000 0.000 0.884 0.008 0.108 0.000
#> SRR1201710 3 0.2165 0.77261 0.000 0.000 0.884 0.008 0.108 0.000
#> SRR1201719 3 0.4082 0.20208 0.000 0.000 0.560 0.432 0.004 0.004
#> SRR1201718 4 0.4237 0.37674 0.000 0.004 0.272 0.692 0.008 0.024
#> SRR1201721 3 0.0146 0.80792 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1201720 4 0.5399 0.30657 0.000 0.000 0.068 0.664 0.192 0.076
#> SRR1201723 3 0.2841 0.73730 0.000 0.000 0.824 0.012 0.164 0.000
#> SRR1201722 5 0.4677 0.56792 0.000 0.000 0.020 0.268 0.668 0.044
#> SRR1201725 3 0.3797 0.24491 0.000 0.000 0.580 0.420 0.000 0.000
#> SRR1201724 4 0.3985 0.40136 0.000 0.000 0.208 0.744 0.008 0.040
#> SRR1201726 4 0.5519 0.10110 0.000 0.000 0.048 0.588 0.304 0.060
#> SRR1201727 3 0.0146 0.80802 0.000 0.000 0.996 0.000 0.004 0.000
#> SRR1201731 3 0.1267 0.78378 0.000 0.000 0.940 0.060 0.000 0.000
#> SRR1201730 4 0.5114 0.36089 0.000 0.000 0.180 0.680 0.112 0.028
#> SRR1201734 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201733 6 0.1957 0.69724 0.000 0.112 0.000 0.000 0.000 0.888
#> SRR1201736 6 0.1950 0.68011 0.000 0.016 0.000 0.032 0.028 0.924
#> SRR1201737 2 0.0260 0.87307 0.000 0.992 0.000 0.000 0.008 0.000
#> SRR1201739 2 0.0146 0.87475 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1201738 6 0.3351 0.57997 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1201742 6 0.3380 0.62775 0.000 0.016 0.000 0.096 0.056 0.832
#> SRR1201743 2 0.6282 0.58120 0.000 0.600 0.192 0.060 0.132 0.016
#> SRR1201745 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1201744 6 0.1036 0.70369 0.000 0.024 0.000 0.008 0.004 0.964
#> SRR1201749 6 0.0767 0.69450 0.000 0.008 0.000 0.012 0.004 0.976
#> SRR1201750 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1201752 3 0.0725 0.80713 0.000 0.000 0.976 0.012 0.012 0.000
#> SRR1201751 4 0.7204 -0.11738 0.000 0.000 0.268 0.396 0.236 0.100
#> SRR1201754 2 0.7816 0.15877 0.000 0.396 0.216 0.240 0.116 0.032
#> SRR1201753 6 0.2845 0.61189 0.000 0.004 0.000 0.172 0.004 0.820
#> SRR1201758 5 0.5342 0.46465 0.116 0.000 0.000 0.232 0.632 0.020
#> SRR1201759 3 0.4150 0.44708 0.000 0.000 0.592 0.016 0.392 0.000
#> SRR1201760 4 0.5490 0.18742 0.000 0.000 0.024 0.620 0.232 0.124
#> SRR1201761 3 0.0260 0.80754 0.000 0.000 0.992 0.008 0.000 0.000
#> SRR1201763 3 0.0922 0.80747 0.000 0.000 0.968 0.004 0.024 0.004
#> SRR1201762 1 0.4683 0.51398 0.652 0.000 0.000 0.068 0.276 0.004
#> SRR1201764 4 0.5709 0.06632 0.000 0.000 0.032 0.568 0.300 0.100
#> SRR1201766 6 0.3647 0.49671 0.000 0.360 0.000 0.000 0.000 0.640
#> SRR1201768 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201769 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201767 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201770 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201771 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201772 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201773 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201774 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201786 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201784 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201785 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201778 6 0.1718 0.70783 0.000 0.044 0.000 0.016 0.008 0.932
#> SRR1201779 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201781 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201780 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201783 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201782 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201798 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201797 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201796 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201795 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201799 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201794 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201793 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201792 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1201791 2 0.3126 0.56956 0.000 0.752 0.000 0.000 0.000 0.248
#> SRR1201807 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1201808 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1201803 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1201804 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1201805 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1201806 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1201801 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1201802 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1201800 6 0.4286 0.59512 0.000 0.168 0.000 0.028 0.052 0.752
#> SRR1201814 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1201816 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1201815 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1201819 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1201820 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1201813 6 0.5675 0.05340 0.000 0.416 0.000 0.032 0.072 0.480
#> SRR1201817 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1201818 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1201825 5 0.6093 0.35526 0.000 0.000 0.000 0.328 0.384 0.288
#> SRR1201827 3 0.1148 0.80556 0.000 0.000 0.960 0.020 0.016 0.004
#> SRR1201828 3 0.1148 0.80556 0.000 0.000 0.960 0.020 0.016 0.004
#> SRR1201826 4 0.7174 -0.08259 0.000 0.000 0.120 0.404 0.172 0.304
#> SRR1201829 3 0.1148 0.80556 0.000 0.000 0.960 0.020 0.016 0.004
#> SRR1201830 3 0.1148 0.80556 0.000 0.000 0.960 0.020 0.016 0.004
#> SRR1201831 3 0.1148 0.80556 0.000 0.000 0.960 0.020 0.016 0.004
#> SRR1201832 3 0.1148 0.80556 0.000 0.000 0.960 0.020 0.016 0.004
#> SRR1201833 3 0.1148 0.80556 0.000 0.000 0.960 0.020 0.016 0.004
#> SRR1201865 3 0.4624 0.68073 0.000 0.000 0.712 0.096 0.180 0.012
#> SRR1201866 3 0.4624 0.68073 0.000 0.000 0.712 0.096 0.180 0.012
#> SRR1201867 3 0.4624 0.68073 0.000 0.000 0.712 0.096 0.180 0.012
#> SRR1201861 3 0.4624 0.68073 0.000 0.000 0.712 0.096 0.180 0.012
#> SRR1201862 3 0.4624 0.68073 0.000 0.000 0.712 0.096 0.180 0.012
#> SRR1201863 3 0.4624 0.68073 0.000 0.000 0.712 0.096 0.180 0.012
#> SRR1201859 6 0.5963 -0.12194 0.000 0.000 0.000 0.272 0.276 0.452
#> SRR1201864 3 0.4624 0.68073 0.000 0.000 0.712 0.096 0.180 0.012
#> SRR1201860 3 0.4624 0.68073 0.000 0.000 0.712 0.096 0.180 0.012
#> SRR1201873 3 0.2624 0.75952 0.000 0.000 0.856 0.020 0.124 0.000
#> SRR1201871 5 0.5766 0.40745 0.000 0.000 0.004 0.384 0.460 0.152
#> SRR1201872 3 0.2624 0.75952 0.000 0.000 0.856 0.020 0.124 0.000
#> SRR1201980 3 0.0458 0.80625 0.000 0.000 0.984 0.016 0.000 0.000
#> SRR1201979 4 0.6314 0.14870 0.000 0.000 0.132 0.568 0.212 0.088
#> SRR1201982 3 0.3684 0.34508 0.000 0.000 0.628 0.372 0.000 0.000
#> SRR1201981 4 0.5087 0.33056 0.000 0.000 0.032 0.692 0.136 0.140
#> SRR1201998 3 0.3804 0.24074 0.000 0.000 0.576 0.424 0.000 0.000
#> SRR1201996 4 0.4136 0.41821 0.000 0.004 0.112 0.772 0.008 0.104
#> SRR1201997 3 0.4088 0.19425 0.000 0.000 0.556 0.436 0.004 0.004
#> SRR1202005 4 0.6009 0.32972 0.000 0.100 0.308 0.552 0.016 0.024
#> SRR1202006 4 0.5972 0.17679 0.000 0.132 0.400 0.452 0.008 0.008
#> SRR1202088 3 0.3683 0.62408 0.000 0.184 0.768 0.000 0.048 0.000
#> SRR1202087 5 0.7286 0.07795 0.000 0.124 0.364 0.032 0.400 0.080
#> SRR1202093 2 0.0363 0.87126 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1202092 6 0.3231 0.66523 0.000 0.180 0.000 0.012 0.008 0.800
#> SRR1202288 6 0.1196 0.70889 0.000 0.040 0.000 0.008 0.000 0.952
#> SRR1202289 2 0.0000 0.87643 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1202299 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1202298 2 0.5528 0.22624 0.000 0.504 0.000 0.032 0.060 0.404
#> SRR1202303 3 0.0922 0.80747 0.000 0.000 0.968 0.004 0.024 0.004
#> SRR1202372 2 0.3557 0.84105 0.000 0.824 0.000 0.044 0.100 0.032
#> SRR1202371 6 0.0777 0.70578 0.000 0.024 0.000 0.004 0.000 0.972
#> SRR1202563 6 0.5219 0.21262 0.000 0.000 0.000 0.244 0.152 0.604
#> SRR1202565 3 0.3672 0.65516 0.000 0.000 0.780 0.176 0.036 0.008
#> SRR1202564 3 0.3672 0.65516 0.000 0.000 0.780 0.176 0.036 0.008
#> SRR1202649 6 0.5962 -0.15454 0.000 0.000 0.000 0.300 0.252 0.448
#> SRR1202650 6 0.4517 0.34022 0.000 0.000 0.000 0.292 0.060 0.648
#> SRR1202651 3 0.7886 -0.12623 0.000 0.272 0.364 0.216 0.116 0.032
#> SRR1202843 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202845 4 0.3672 0.35425 0.000 0.004 0.000 0.712 0.008 0.276
#> SRR1202847 4 0.5615 0.10856 0.000 0.108 0.432 0.452 0.004 0.004
#> SRR1202846 4 0.5551 0.09015 0.000 0.100 0.440 0.452 0.004 0.004
#> SRR1202945 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.1863 0.75233 0.000 0.000 0.896 0.104 0.000 0.000
#> SRR1203131 4 0.5102 0.25739 0.000 0.000 0.008 0.656 0.160 0.176
#> SRR1203133 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203827 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203828 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203842 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203843 1 0.0000 0.99329 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203845 4 0.6208 0.24975 0.000 0.180 0.352 0.452 0.008 0.008
#> SRR1203844 4 0.4607 0.31157 0.000 0.040 0.004 0.656 0.008 0.292
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["MAD", "pam"]
# you can also extract it by
# res = res_list["MAD:pam"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'MAD' method.
#> Subgroups are detected by 'pam' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 6.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.3830 0.618 0.618
#> 3 3 0.973 0.957 0.982 0.7087 0.728 0.559
#> 4 4 1.000 0.973 0.981 0.1440 0.874 0.652
#> 5 5 0.899 0.914 0.942 0.0454 0.958 0.833
#> 6 6 0.983 0.949 0.975 0.0406 0.973 0.873
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 6
#> attr(,"optional")
#> [1] 2 3 4
There is also optional best \(k\) = 2 3 4 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0.0000 1.000 0.000 1.000
#> SRR1201590 2 0.0000 1.000 0.000 1.000
#> SRR1201593 2 0.0000 1.000 0.000 1.000
#> SRR1201592 2 0.0000 1.000 0.000 1.000
#> SRR1201617 2 0.0000 1.000 0.000 1.000
#> SRR1201616 2 0.0000 1.000 0.000 1.000
#> SRR1201619 2 0.0000 1.000 0.000 1.000
#> SRR1201618 2 0.0000 1.000 0.000 1.000
#> SRR1201620 2 0.0000 1.000 0.000 1.000
#> SRR1201621 2 0.0000 1.000 0.000 1.000
#> SRR1201623 2 0.0000 1.000 0.000 1.000
#> SRR1201622 2 0.0000 1.000 0.000 1.000
#> SRR1201624 2 0.0000 1.000 0.000 1.000
#> SRR1201625 2 0.0000 1.000 0.000 1.000
#> SRR1201626 2 0.0376 0.996 0.004 0.996
#> SRR1201627 2 0.0000 1.000 0.000 1.000
#> SRR1201628 2 0.0000 1.000 0.000 1.000
#> SRR1201629 2 0.0000 1.000 0.000 1.000
#> SRR1201630 2 0.0000 1.000 0.000 1.000
#> SRR1201631 2 0.0000 1.000 0.000 1.000
#> SRR1201641 2 0.0000 1.000 0.000 1.000
#> SRR1201640 2 0.0000 1.000 0.000 1.000
#> SRR1201643 2 0.0000 1.000 0.000 1.000
#> SRR1201644 2 0.0000 1.000 0.000 1.000
#> SRR1201661 2 0.0000 1.000 0.000 1.000
#> SRR1201662 2 0.0000 1.000 0.000 1.000
#> SRR1201663 2 0.0000 1.000 0.000 1.000
#> SRR1201664 2 0.0000 1.000 0.000 1.000
#> SRR1201665 2 0.0000 1.000 0.000 1.000
#> SRR1201666 2 0.0000 1.000 0.000 1.000
#> SRR1201667 2 0.0000 1.000 0.000 1.000
#> SRR1201668 2 0.0000 1.000 0.000 1.000
#> SRR1201670 2 0.0000 1.000 0.000 1.000
#> SRR1201669 2 0.0000 1.000 0.000 1.000
#> SRR1201673 2 0.0000 1.000 0.000 1.000
#> SRR1201672 2 0.0000 1.000 0.000 1.000
#> SRR1201671 2 0.0000 1.000 0.000 1.000
#> SRR1201677 2 0.0000 1.000 0.000 1.000
#> SRR1201676 2 0.0000 1.000 0.000 1.000
#> SRR1201675 2 0.0000 1.000 0.000 1.000
#> SRR1201674 2 0.0000 1.000 0.000 1.000
#> SRR1201678 2 0.0000 1.000 0.000 1.000
#> SRR1201682 2 0.0000 1.000 0.000 1.000
#> SRR1201683 2 0.0000 1.000 0.000 1.000
#> SRR1201680 2 0.0000 1.000 0.000 1.000
#> SRR1201681 2 0.0000 1.000 0.000 1.000
#> SRR1201679 2 0.0000 1.000 0.000 1.000
#> SRR1201686 2 0.0000 1.000 0.000 1.000
#> SRR1201687 2 0.0000 1.000 0.000 1.000
#> SRR1201688 2 0.0000 1.000 0.000 1.000
#> SRR1201689 2 0.0000 1.000 0.000 1.000
#> SRR1201685 2 0.0000 1.000 0.000 1.000
#> SRR1201692 2 0.0000 1.000 0.000 1.000
#> SRR1201691 2 0.0000 1.000 0.000 1.000
#> SRR1201690 2 0.0000 1.000 0.000 1.000
#> SRR1201696 2 0.0000 1.000 0.000 1.000
#> SRR1201695 2 0.0000 1.000 0.000 1.000
#> SRR1201694 2 0.0000 1.000 0.000 1.000
#> SRR1201693 2 0.0000 1.000 0.000 1.000
#> SRR1201697 2 0.0000 1.000 0.000 1.000
#> SRR1201698 2 0.0000 1.000 0.000 1.000
#> SRR1201700 2 0.0000 1.000 0.000 1.000
#> SRR1201708 2 0.0000 1.000 0.000 1.000
#> SRR1201707 2 0.0000 1.000 0.000 1.000
#> SRR1201706 2 0.0000 1.000 0.000 1.000
#> SRR1201702 2 0.0000 1.000 0.000 1.000
#> SRR1201705 2 0.0000 1.000 0.000 1.000
#> SRR1201701 2 0.0000 1.000 0.000 1.000
#> SRR1201704 2 0.0000 1.000 0.000 1.000
#> SRR1201703 2 0.0000 1.000 0.000 1.000
#> SRR1201716 2 0.0000 1.000 0.000 1.000
#> SRR1201715 2 0.0000 1.000 0.000 1.000
#> SRR1201717 2 0.0000 1.000 0.000 1.000
#> SRR1201712 2 0.0000 1.000 0.000 1.000
#> SRR1201709 2 0.0000 1.000 0.000 1.000
#> SRR1201711 2 0.0000 1.000 0.000 1.000
#> SRR1201714 2 0.0000 1.000 0.000 1.000
#> SRR1201713 2 0.0000 1.000 0.000 1.000
#> SRR1201710 2 0.0000 1.000 0.000 1.000
#> SRR1201719 2 0.0000 1.000 0.000 1.000
#> SRR1201718 2 0.0000 1.000 0.000 1.000
#> SRR1201721 2 0.0000 1.000 0.000 1.000
#> SRR1201720 2 0.0000 1.000 0.000 1.000
#> SRR1201723 2 0.0000 1.000 0.000 1.000
#> SRR1201722 2 0.0000 1.000 0.000 1.000
#> SRR1201725 2 0.0000 1.000 0.000 1.000
#> SRR1201724 2 0.0000 1.000 0.000 1.000
#> SRR1201726 2 0.0000 1.000 0.000 1.000
#> SRR1201727 2 0.0000 1.000 0.000 1.000
#> SRR1201731 2 0.0000 1.000 0.000 1.000
#> SRR1201730 2 0.0000 1.000 0.000 1.000
#> SRR1201734 2 0.0000 1.000 0.000 1.000
#> SRR1201733 2 0.0000 1.000 0.000 1.000
#> SRR1201736 2 0.0000 1.000 0.000 1.000
#> SRR1201737 2 0.0000 1.000 0.000 1.000
#> SRR1201739 2 0.0000 1.000 0.000 1.000
#> SRR1201738 2 0.0000 1.000 0.000 1.000
#> SRR1201742 2 0.0000 1.000 0.000 1.000
#> SRR1201743 2 0.0000 1.000 0.000 1.000
#> SRR1201745 2 0.0000 1.000 0.000 1.000
#> SRR1201744 2 0.0000 1.000 0.000 1.000
#> SRR1201749 2 0.0000 1.000 0.000 1.000
#> SRR1201750 2 0.0000 1.000 0.000 1.000
#> SRR1201752 2 0.0000 1.000 0.000 1.000
#> SRR1201751 2 0.0000 1.000 0.000 1.000
#> SRR1201754 2 0.0000 1.000 0.000 1.000
#> SRR1201753 2 0.0000 1.000 0.000 1.000
#> SRR1201758 2 0.0000 1.000 0.000 1.000
#> SRR1201759 2 0.0000 1.000 0.000 1.000
#> SRR1201760 2 0.0000 1.000 0.000 1.000
#> SRR1201761 2 0.0000 1.000 0.000 1.000
#> SRR1201763 2 0.0000 1.000 0.000 1.000
#> SRR1201762 2 0.0000 1.000 0.000 1.000
#> SRR1201764 2 0.0000 1.000 0.000 1.000
#> SRR1201766 2 0.0000 1.000 0.000 1.000
#> SRR1201768 2 0.0000 1.000 0.000 1.000
#> SRR1201769 2 0.0000 1.000 0.000 1.000
#> SRR1201767 2 0.0000 1.000 0.000 1.000
#> SRR1201770 2 0.0000 1.000 0.000 1.000
#> SRR1201771 2 0.0000 1.000 0.000 1.000
#> SRR1201772 2 0.0000 1.000 0.000 1.000
#> SRR1201773 2 0.0000 1.000 0.000 1.000
#> SRR1201774 2 0.0000 1.000 0.000 1.000
#> SRR1201786 2 0.0000 1.000 0.000 1.000
#> SRR1201784 2 0.0000 1.000 0.000 1.000
#> SRR1201785 2 0.0000 1.000 0.000 1.000
#> SRR1201778 2 0.0000 1.000 0.000 1.000
#> SRR1201779 2 0.0000 1.000 0.000 1.000
#> SRR1201781 2 0.0000 1.000 0.000 1.000
#> SRR1201780 2 0.0000 1.000 0.000 1.000
#> SRR1201783 2 0.0000 1.000 0.000 1.000
#> SRR1201782 2 0.0000 1.000 0.000 1.000
#> SRR1201798 2 0.0000 1.000 0.000 1.000
#> SRR1201797 2 0.0000 1.000 0.000 1.000
#> SRR1201796 2 0.0000 1.000 0.000 1.000
#> SRR1201795 2 0.0000 1.000 0.000 1.000
#> SRR1201799 2 0.0000 1.000 0.000 1.000
#> SRR1201794 2 0.0000 1.000 0.000 1.000
#> SRR1201793 2 0.0000 1.000 0.000 1.000
#> SRR1201792 2 0.0000 1.000 0.000 1.000
#> SRR1201791 2 0.0000 1.000 0.000 1.000
#> SRR1201807 2 0.0000 1.000 0.000 1.000
#> SRR1201808 2 0.0000 1.000 0.000 1.000
#> SRR1201803 2 0.0000 1.000 0.000 1.000
#> SRR1201804 2 0.0000 1.000 0.000 1.000
#> SRR1201805 2 0.0000 1.000 0.000 1.000
#> SRR1201806 2 0.0000 1.000 0.000 1.000
#> SRR1201801 2 0.0000 1.000 0.000 1.000
#> SRR1201802 2 0.0000 1.000 0.000 1.000
#> SRR1201800 2 0.0000 1.000 0.000 1.000
#> SRR1201814 2 0.0000 1.000 0.000 1.000
#> SRR1201816 2 0.0000 1.000 0.000 1.000
#> SRR1201815 2 0.0000 1.000 0.000 1.000
#> SRR1201819 2 0.0000 1.000 0.000 1.000
#> SRR1201820 2 0.0000 1.000 0.000 1.000
#> SRR1201813 2 0.0000 1.000 0.000 1.000
#> SRR1201817 2 0.0000 1.000 0.000 1.000
#> SRR1201818 2 0.0000 1.000 0.000 1.000
#> SRR1201825 2 0.0000 1.000 0.000 1.000
#> SRR1201827 2 0.0000 1.000 0.000 1.000
#> SRR1201828 2 0.0000 1.000 0.000 1.000
#> SRR1201826 2 0.0000 1.000 0.000 1.000
#> SRR1201829 2 0.0000 1.000 0.000 1.000
#> SRR1201830 2 0.0000 1.000 0.000 1.000
#> SRR1201831 2 0.0000 1.000 0.000 1.000
#> SRR1201832 2 0.0000 1.000 0.000 1.000
#> SRR1201833 2 0.0000 1.000 0.000 1.000
#> SRR1201865 2 0.0000 1.000 0.000 1.000
#> SRR1201866 2 0.0000 1.000 0.000 1.000
#> SRR1201867 2 0.0000 1.000 0.000 1.000
#> SRR1201861 2 0.0000 1.000 0.000 1.000
#> SRR1201862 2 0.0000 1.000 0.000 1.000
#> SRR1201863 2 0.0000 1.000 0.000 1.000
#> SRR1201859 2 0.0000 1.000 0.000 1.000
#> SRR1201864 2 0.0000 1.000 0.000 1.000
#> SRR1201860 2 0.0000 1.000 0.000 1.000
#> SRR1201873 2 0.0000 1.000 0.000 1.000
#> SRR1201871 2 0.0000 1.000 0.000 1.000
#> SRR1201872 2 0.0000 1.000 0.000 1.000
#> SRR1201980 2 0.0000 1.000 0.000 1.000
#> SRR1201979 2 0.0000 1.000 0.000 1.000
#> SRR1201982 2 0.0000 1.000 0.000 1.000
#> SRR1201981 2 0.0000 1.000 0.000 1.000
#> SRR1201998 2 0.0000 1.000 0.000 1.000
#> SRR1201996 2 0.0000 1.000 0.000 1.000
#> SRR1201997 2 0.0000 1.000 0.000 1.000
#> SRR1202005 2 0.0000 1.000 0.000 1.000
#> SRR1202006 2 0.0000 1.000 0.000 1.000
#> SRR1202088 2 0.0000 1.000 0.000 1.000
#> SRR1202087 2 0.0000 1.000 0.000 1.000
#> SRR1202093 2 0.0000 1.000 0.000 1.000
#> SRR1202092 2 0.0000 1.000 0.000 1.000
#> SRR1202288 2 0.0000 1.000 0.000 1.000
#> SRR1202289 2 0.0000 1.000 0.000 1.000
#> SRR1202299 2 0.0000 1.000 0.000 1.000
#> SRR1202298 2 0.0000 1.000 0.000 1.000
#> SRR1202303 2 0.0000 1.000 0.000 1.000
#> SRR1202372 2 0.0000 1.000 0.000 1.000
#> SRR1202371 2 0.0000 1.000 0.000 1.000
#> SRR1202563 2 0.0000 1.000 0.000 1.000
#> SRR1202565 2 0.0000 1.000 0.000 1.000
#> SRR1202564 2 0.0000 1.000 0.000 1.000
#> SRR1202649 2 0.0000 1.000 0.000 1.000
#> SRR1202650 2 0.0000 1.000 0.000 1.000
#> SRR1202651 2 0.0000 1.000 0.000 1.000
#> SRR1202843 1 0.0000 1.000 1.000 0.000
#> SRR1202844 1 0.0000 1.000 1.000 0.000
#> SRR1202845 2 0.0000 1.000 0.000 1.000
#> SRR1202847 2 0.0000 1.000 0.000 1.000
#> SRR1202846 2 0.0000 1.000 0.000 1.000
#> SRR1202945 1 0.0000 1.000 1.000 0.000
#> SRR1202949 1 0.0000 1.000 1.000 0.000
#> SRR1202977 1 0.0000 1.000 1.000 0.000
#> SRR1202978 1 0.0000 1.000 1.000 0.000
#> SRR1202979 1 0.0000 1.000 1.000 0.000
#> SRR1202990 1 0.0000 1.000 1.000 0.000
#> SRR1202999 1 0.0000 1.000 1.000 0.000
#> SRR1203005 1 0.0000 1.000 1.000 0.000
#> SRR1203006 1 0.0000 1.000 1.000 0.000
#> SRR1203007 1 0.0000 1.000 1.000 0.000
#> SRR1203009 1 0.0000 1.000 1.000 0.000
#> SRR1203008 1 0.0000 1.000 1.000 0.000
#> SRR1203010 1 0.0000 1.000 1.000 0.000
#> SRR1203011 1 0.0000 1.000 1.000 0.000
#> SRR1203025 1 0.0000 1.000 1.000 0.000
#> SRR1203026 1 0.0000 1.000 1.000 0.000
#> SRR1203027 1 0.0000 1.000 1.000 0.000
#> SRR1203061 1 0.0000 1.000 1.000 0.000
#> SRR1203089 1 0.0000 1.000 1.000 0.000
#> SRR1203125 1 0.0000 1.000 1.000 0.000
#> SRR1203128 1 0.0000 1.000 1.000 0.000
#> SRR1203129 1 0.0000 1.000 1.000 0.000
#> SRR1203130 1 0.0000 1.000 1.000 0.000
#> SRR1203132 2 0.0000 1.000 0.000 1.000
#> SRR1203131 2 0.0000 1.000 0.000 1.000
#> SRR1203133 1 0.0000 1.000 1.000 0.000
#> SRR1203138 1 0.0000 1.000 1.000 0.000
#> SRR1203760 1 0.0000 1.000 1.000 0.000
#> SRR1203761 1 0.0000 1.000 1.000 0.000
#> SRR1203770 1 0.0000 1.000 1.000 0.000
#> SRR1203771 1 0.0000 1.000 1.000 0.000
#> SRR1203772 1 0.0000 1.000 1.000 0.000
#> SRR1203773 1 0.0000 1.000 1.000 0.000
#> SRR1203774 1 0.0000 1.000 1.000 0.000
#> SRR1203775 1 0.0000 1.000 1.000 0.000
#> SRR1203800 1 0.0000 1.000 1.000 0.000
#> SRR1203801 1 0.0000 1.000 1.000 0.000
#> SRR1203802 1 0.0000 1.000 1.000 0.000
#> SRR1203803 1 0.0000 1.000 1.000 0.000
#> SRR1203804 1 0.0000 1.000 1.000 0.000
#> SRR1203805 1 0.0000 1.000 1.000 0.000
#> SRR1203806 1 0.0000 1.000 1.000 0.000
#> SRR1203807 1 0.0000 1.000 1.000 0.000
#> SRR1203808 1 0.0000 1.000 1.000 0.000
#> SRR1203811 1 0.0000 1.000 1.000 0.000
#> SRR1203812 1 0.0000 1.000 1.000 0.000
#> SRR1203813 1 0.0000 1.000 1.000 0.000
#> SRR1203814 1 0.0000 1.000 1.000 0.000
#> SRR1203815 1 0.0000 1.000 1.000 0.000
#> SRR1203816 1 0.0000 1.000 1.000 0.000
#> SRR1203817 1 0.0000 1.000 1.000 0.000
#> SRR1203818 1 0.0000 1.000 1.000 0.000
#> SRR1203819 1 0.0000 1.000 1.000 0.000
#> SRR1203822 1 0.0000 1.000 1.000 0.000
#> SRR1203823 1 0.0000 1.000 1.000 0.000
#> SRR1203824 1 0.0000 1.000 1.000 0.000
#> SRR1203825 1 0.0000 1.000 1.000 0.000
#> SRR1203826 1 0.0000 1.000 1.000 0.000
#> SRR1203827 1 0.0000 1.000 1.000 0.000
#> SRR1203828 1 0.0000 1.000 1.000 0.000
#> SRR1203829 1 0.0000 1.000 1.000 0.000
#> SRR1203830 1 0.0000 1.000 1.000 0.000
#> SRR1203831 1 0.0000 1.000 1.000 0.000
#> SRR1203832 1 0.0000 1.000 1.000 0.000
#> SRR1203833 1 0.0000 1.000 1.000 0.000
#> SRR1203834 1 0.0000 1.000 1.000 0.000
#> SRR1203835 1 0.0000 1.000 1.000 0.000
#> SRR1203836 1 0.0000 1.000 1.000 0.000
#> SRR1203837 1 0.0000 1.000 1.000 0.000
#> SRR1203838 1 0.0000 1.000 1.000 0.000
#> SRR1203839 1 0.0000 1.000 1.000 0.000
#> SRR1203842 1 0.0000 1.000 1.000 0.000
#> SRR1203843 1 0.0000 1.000 1.000 0.000
#> SRR1203845 2 0.0000 1.000 0.000 1.000
#> SRR1203844 2 0.0000 1.000 0.000 1.000
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 3 0.0000 0.970 0 0.000 1.000
#> SRR1201590 3 0.0000 0.970 0 0.000 1.000
#> SRR1201593 3 0.0000 0.970 0 0.000 1.000
#> SRR1201592 3 0.0000 0.970 0 0.000 1.000
#> SRR1201617 3 0.0000 0.970 0 0.000 1.000
#> SRR1201616 3 0.0000 0.970 0 0.000 1.000
#> SRR1201619 3 0.4062 0.821 0 0.164 0.836
#> SRR1201618 3 0.4121 0.817 0 0.168 0.832
#> SRR1201620 3 0.0000 0.970 0 0.000 1.000
#> SRR1201621 3 0.0000 0.970 0 0.000 1.000
#> SRR1201623 2 0.0000 0.976 0 1.000 0.000
#> SRR1201622 2 0.0000 0.976 0 1.000 0.000
#> SRR1201624 2 0.0000 0.976 0 1.000 0.000
#> SRR1201625 2 0.0000 0.976 0 1.000 0.000
#> SRR1201626 2 0.5835 0.496 0 0.660 0.340
#> SRR1201627 2 0.0000 0.976 0 1.000 0.000
#> SRR1201628 2 0.0000 0.976 0 1.000 0.000
#> SRR1201629 2 0.0000 0.976 0 1.000 0.000
#> SRR1201630 3 0.4504 0.779 0 0.196 0.804
#> SRR1201631 2 0.0000 0.976 0 1.000 0.000
#> SRR1201641 2 0.0000 0.976 0 1.000 0.000
#> SRR1201640 2 0.0000 0.976 0 1.000 0.000
#> SRR1201643 2 0.0000 0.976 0 1.000 0.000
#> SRR1201644 2 0.0000 0.976 0 1.000 0.000
#> SRR1201661 3 0.5810 0.524 0 0.336 0.664
#> SRR1201662 2 0.0000 0.976 0 1.000 0.000
#> SRR1201663 2 0.0000 0.976 0 1.000 0.000
#> SRR1201664 2 0.0000 0.976 0 1.000 0.000
#> SRR1201665 3 0.0000 0.970 0 0.000 1.000
#> SRR1201666 3 0.0000 0.970 0 0.000 1.000
#> SRR1201667 3 0.0000 0.970 0 0.000 1.000
#> SRR1201668 2 0.5988 0.412 0 0.632 0.368
#> SRR1201670 2 0.0424 0.970 0 0.992 0.008
#> SRR1201669 2 0.0424 0.970 0 0.992 0.008
#> SRR1201673 2 0.0424 0.970 0 0.992 0.008
#> SRR1201672 2 0.0592 0.967 0 0.988 0.012
#> SRR1201671 2 0.0424 0.970 0 0.992 0.008
#> SRR1201677 2 0.0592 0.967 0 0.988 0.012
#> SRR1201676 2 0.0592 0.967 0 0.988 0.012
#> SRR1201675 2 0.0592 0.967 0 0.988 0.012
#> SRR1201674 2 0.0424 0.970 0 0.992 0.008
#> SRR1201678 2 0.0592 0.967 0 0.988 0.012
#> SRR1201682 3 0.3192 0.877 0 0.112 0.888
#> SRR1201683 3 0.3752 0.844 0 0.144 0.856
#> SRR1201680 3 0.3619 0.853 0 0.136 0.864
#> SRR1201681 3 0.3752 0.844 0 0.144 0.856
#> SRR1201679 3 0.0000 0.970 0 0.000 1.000
#> SRR1201686 2 0.0000 0.976 0 1.000 0.000
#> SRR1201687 2 0.0000 0.976 0 1.000 0.000
#> SRR1201688 2 0.0000 0.976 0 1.000 0.000
#> SRR1201689 2 0.0000 0.976 0 1.000 0.000
#> SRR1201685 2 0.0237 0.973 0 0.996 0.004
#> SRR1201692 2 0.0000 0.976 0 1.000 0.000
#> SRR1201691 2 0.0000 0.976 0 1.000 0.000
#> SRR1201690 2 0.0000 0.976 0 1.000 0.000
#> SRR1201696 2 0.0000 0.976 0 1.000 0.000
#> SRR1201695 2 0.0000 0.976 0 1.000 0.000
#> SRR1201694 2 0.0000 0.976 0 1.000 0.000
#> SRR1201693 2 0.0000 0.976 0 1.000 0.000
#> SRR1201697 2 0.0000 0.976 0 1.000 0.000
#> SRR1201698 2 0.0000 0.976 0 1.000 0.000
#> SRR1201700 2 0.0000 0.976 0 1.000 0.000
#> SRR1201708 2 0.0000 0.976 0 1.000 0.000
#> SRR1201707 2 0.0000 0.976 0 1.000 0.000
#> SRR1201706 2 0.0000 0.976 0 1.000 0.000
#> SRR1201702 2 0.0000 0.976 0 1.000 0.000
#> SRR1201705 2 0.0000 0.976 0 1.000 0.000
#> SRR1201701 2 0.0000 0.976 0 1.000 0.000
#> SRR1201704 2 0.0000 0.976 0 1.000 0.000
#> SRR1201703 2 0.0000 0.976 0 1.000 0.000
#> SRR1201716 2 0.0000 0.976 0 1.000 0.000
#> SRR1201715 2 0.0000 0.976 0 1.000 0.000
#> SRR1201717 2 0.0000 0.976 0 1.000 0.000
#> SRR1201712 2 0.0000 0.976 0 1.000 0.000
#> SRR1201709 2 0.0000 0.976 0 1.000 0.000
#> SRR1201711 2 0.0000 0.976 0 1.000 0.000
#> SRR1201714 2 0.0000 0.976 0 1.000 0.000
#> SRR1201713 2 0.0000 0.976 0 1.000 0.000
#> SRR1201710 2 0.0000 0.976 0 1.000 0.000
#> SRR1201719 2 0.0000 0.976 0 1.000 0.000
#> SRR1201718 2 0.0000 0.976 0 1.000 0.000
#> SRR1201721 2 0.0000 0.976 0 1.000 0.000
#> SRR1201720 2 0.0000 0.976 0 1.000 0.000
#> SRR1201723 2 0.0000 0.976 0 1.000 0.000
#> SRR1201722 2 0.0000 0.976 0 1.000 0.000
#> SRR1201725 2 0.0000 0.976 0 1.000 0.000
#> SRR1201724 2 0.2261 0.913 0 0.932 0.068
#> SRR1201726 2 0.0000 0.976 0 1.000 0.000
#> SRR1201727 2 0.0000 0.976 0 1.000 0.000
#> SRR1201731 2 0.0000 0.976 0 1.000 0.000
#> SRR1201730 2 0.0000 0.976 0 1.000 0.000
#> SRR1201734 3 0.0000 0.970 0 0.000 1.000
#> SRR1201733 3 0.0000 0.970 0 0.000 1.000
#> SRR1201736 3 0.0000 0.970 0 0.000 1.000
#> SRR1201737 3 0.0000 0.970 0 0.000 1.000
#> SRR1201739 3 0.0000 0.970 0 0.000 1.000
#> SRR1201738 3 0.0000 0.970 0 0.000 1.000
#> SRR1201742 3 0.3941 0.832 0 0.156 0.844
#> SRR1201743 3 0.4121 0.816 0 0.168 0.832
#> SRR1201745 3 0.0000 0.970 0 0.000 1.000
#> SRR1201744 3 0.0000 0.970 0 0.000 1.000
#> SRR1201749 3 0.0000 0.970 0 0.000 1.000
#> SRR1201750 3 0.0000 0.970 0 0.000 1.000
#> SRR1201752 2 0.0000 0.976 0 1.000 0.000
#> SRR1201751 2 0.0000 0.976 0 1.000 0.000
#> SRR1201754 2 0.2066 0.920 0 0.940 0.060
#> SRR1201753 3 0.4002 0.827 0 0.160 0.840
#> SRR1201758 2 0.0000 0.976 0 1.000 0.000
#> SRR1201759 2 0.0000 0.976 0 1.000 0.000
#> SRR1201760 2 0.0000 0.976 0 1.000 0.000
#> SRR1201761 2 0.0000 0.976 0 1.000 0.000
#> SRR1201763 2 0.0000 0.976 0 1.000 0.000
#> SRR1201762 2 0.0237 0.973 0 0.996 0.004
#> SRR1201764 2 0.0892 0.960 0 0.980 0.020
#> SRR1201766 3 0.0000 0.970 0 0.000 1.000
#> SRR1201768 3 0.0000 0.970 0 0.000 1.000
#> SRR1201769 3 0.0000 0.970 0 0.000 1.000
#> SRR1201767 3 0.0000 0.970 0 0.000 1.000
#> SRR1201770 3 0.0000 0.970 0 0.000 1.000
#> SRR1201771 3 0.0000 0.970 0 0.000 1.000
#> SRR1201772 3 0.0000 0.970 0 0.000 1.000
#> SRR1201773 3 0.0000 0.970 0 0.000 1.000
#> SRR1201774 3 0.0000 0.970 0 0.000 1.000
#> SRR1201786 3 0.0000 0.970 0 0.000 1.000
#> SRR1201784 3 0.0000 0.970 0 0.000 1.000
#> SRR1201785 3 0.0000 0.970 0 0.000 1.000
#> SRR1201778 3 0.0000 0.970 0 0.000 1.000
#> SRR1201779 3 0.0000 0.970 0 0.000 1.000
#> SRR1201781 3 0.0000 0.970 0 0.000 1.000
#> SRR1201780 3 0.0000 0.970 0 0.000 1.000
#> SRR1201783 3 0.0000 0.970 0 0.000 1.000
#> SRR1201782 3 0.0000 0.970 0 0.000 1.000
#> SRR1201798 3 0.0000 0.970 0 0.000 1.000
#> SRR1201797 3 0.0000 0.970 0 0.000 1.000
#> SRR1201796 3 0.0000 0.970 0 0.000 1.000
#> SRR1201795 3 0.0000 0.970 0 0.000 1.000
#> SRR1201799 3 0.0000 0.970 0 0.000 1.000
#> SRR1201794 3 0.0000 0.970 0 0.000 1.000
#> SRR1201793 3 0.0000 0.970 0 0.000 1.000
#> SRR1201792 3 0.0000 0.970 0 0.000 1.000
#> SRR1201791 3 0.0000 0.970 0 0.000 1.000
#> SRR1201807 3 0.0000 0.970 0 0.000 1.000
#> SRR1201808 3 0.0000 0.970 0 0.000 1.000
#> SRR1201803 3 0.0000 0.970 0 0.000 1.000
#> SRR1201804 3 0.0000 0.970 0 0.000 1.000
#> SRR1201805 3 0.0000 0.970 0 0.000 1.000
#> SRR1201806 3 0.0000 0.970 0 0.000 1.000
#> SRR1201801 3 0.0000 0.970 0 0.000 1.000
#> SRR1201802 3 0.0000 0.970 0 0.000 1.000
#> SRR1201800 3 0.0000 0.970 0 0.000 1.000
#> SRR1201814 3 0.0000 0.970 0 0.000 1.000
#> SRR1201816 3 0.0000 0.970 0 0.000 1.000
#> SRR1201815 3 0.0000 0.970 0 0.000 1.000
#> SRR1201819 3 0.0000 0.970 0 0.000 1.000
#> SRR1201820 3 0.0000 0.970 0 0.000 1.000
#> SRR1201813 3 0.0000 0.970 0 0.000 1.000
#> SRR1201817 3 0.0000 0.970 0 0.000 1.000
#> SRR1201818 3 0.0000 0.970 0 0.000 1.000
#> SRR1201825 2 0.0237 0.973 0 0.996 0.004
#> SRR1201827 2 0.0000 0.976 0 1.000 0.000
#> SRR1201828 2 0.0000 0.976 0 1.000 0.000
#> SRR1201826 2 0.0000 0.976 0 1.000 0.000
#> SRR1201829 2 0.0000 0.976 0 1.000 0.000
#> SRR1201830 2 0.0000 0.976 0 1.000 0.000
#> SRR1201831 2 0.0000 0.976 0 1.000 0.000
#> SRR1201832 2 0.0000 0.976 0 1.000 0.000
#> SRR1201833 2 0.0000 0.976 0 1.000 0.000
#> SRR1201865 2 0.0000 0.976 0 1.000 0.000
#> SRR1201866 2 0.0000 0.976 0 1.000 0.000
#> SRR1201867 2 0.0000 0.976 0 1.000 0.000
#> SRR1201861 2 0.0000 0.976 0 1.000 0.000
#> SRR1201862 2 0.0000 0.976 0 1.000 0.000
#> SRR1201863 2 0.0000 0.976 0 1.000 0.000
#> SRR1201859 2 0.6260 0.164 0 0.552 0.448
#> SRR1201864 2 0.0000 0.976 0 1.000 0.000
#> SRR1201860 2 0.0000 0.976 0 1.000 0.000
#> SRR1201873 2 0.0000 0.976 0 1.000 0.000
#> SRR1201871 2 0.0000 0.976 0 1.000 0.000
#> SRR1201872 2 0.0000 0.976 0 1.000 0.000
#> SRR1201980 2 0.0000 0.976 0 1.000 0.000
#> SRR1201979 2 0.0000 0.976 0 1.000 0.000
#> SRR1201982 2 0.0000 0.976 0 1.000 0.000
#> SRR1201981 2 0.0000 0.976 0 1.000 0.000
#> SRR1201998 2 0.0000 0.976 0 1.000 0.000
#> SRR1201996 2 0.2165 0.916 0 0.936 0.064
#> SRR1201997 2 0.0000 0.976 0 1.000 0.000
#> SRR1202005 2 0.5988 0.407 0 0.632 0.368
#> SRR1202006 2 0.0000 0.976 0 1.000 0.000
#> SRR1202088 3 0.3879 0.825 0 0.152 0.848
#> SRR1202087 3 0.1163 0.949 0 0.028 0.972
#> SRR1202093 3 0.0000 0.970 0 0.000 1.000
#> SRR1202092 3 0.0000 0.970 0 0.000 1.000
#> SRR1202288 3 0.0000 0.970 0 0.000 1.000
#> SRR1202289 3 0.0000 0.970 0 0.000 1.000
#> SRR1202299 3 0.0000 0.970 0 0.000 1.000
#> SRR1202298 3 0.0000 0.970 0 0.000 1.000
#> SRR1202303 2 0.0000 0.976 0 1.000 0.000
#> SRR1202372 3 0.0000 0.970 0 0.000 1.000
#> SRR1202371 3 0.0000 0.970 0 0.000 1.000
#> SRR1202563 2 0.6215 0.233 0 0.572 0.428
#> SRR1202565 2 0.0000 0.976 0 1.000 0.000
#> SRR1202564 2 0.0000 0.976 0 1.000 0.000
#> SRR1202649 3 0.4346 0.796 0 0.184 0.816
#> SRR1202650 2 0.5560 0.563 0 0.700 0.300
#> SRR1202651 2 0.0000 0.976 0 1.000 0.000
#> SRR1202843 1 0.0000 1.000 1 0.000 0.000
#> SRR1202844 1 0.0000 1.000 1 0.000 0.000
#> SRR1202845 3 0.2448 0.911 0 0.076 0.924
#> SRR1202847 2 0.4605 0.736 0 0.796 0.204
#> SRR1202846 2 0.1529 0.941 0 0.960 0.040
#> SRR1202945 1 0.0000 1.000 1 0.000 0.000
#> SRR1202949 1 0.0000 1.000 1 0.000 0.000
#> SRR1202977 1 0.0000 1.000 1 0.000 0.000
#> SRR1202978 1 0.0000 1.000 1 0.000 0.000
#> SRR1202979 1 0.0000 1.000 1 0.000 0.000
#> SRR1202990 1 0.0000 1.000 1 0.000 0.000
#> SRR1202999 1 0.0000 1.000 1 0.000 0.000
#> SRR1203005 1 0.0000 1.000 1 0.000 0.000
#> SRR1203006 1 0.0000 1.000 1 0.000 0.000
#> SRR1203007 1 0.0000 1.000 1 0.000 0.000
#> SRR1203009 1 0.0000 1.000 1 0.000 0.000
#> SRR1203008 1 0.0000 1.000 1 0.000 0.000
#> SRR1203010 1 0.0000 1.000 1 0.000 0.000
#> SRR1203011 1 0.0000 1.000 1 0.000 0.000
#> SRR1203025 1 0.0000 1.000 1 0.000 0.000
#> SRR1203026 1 0.0000 1.000 1 0.000 0.000
#> SRR1203027 1 0.0000 1.000 1 0.000 0.000
#> SRR1203061 1 0.0000 1.000 1 0.000 0.000
#> SRR1203089 1 0.0000 1.000 1 0.000 0.000
#> SRR1203125 1 0.0000 1.000 1 0.000 0.000
#> SRR1203128 1 0.0000 1.000 1 0.000 0.000
#> SRR1203129 1 0.0000 1.000 1 0.000 0.000
#> SRR1203130 1 0.0000 1.000 1 0.000 0.000
#> SRR1203132 2 0.0000 0.976 0 1.000 0.000
#> SRR1203131 2 0.0000 0.976 0 1.000 0.000
#> SRR1203133 1 0.0000 1.000 1 0.000 0.000
#> SRR1203138 1 0.0000 1.000 1 0.000 0.000
#> SRR1203760 1 0.0000 1.000 1 0.000 0.000
#> SRR1203761 1 0.0000 1.000 1 0.000 0.000
#> SRR1203770 1 0.0000 1.000 1 0.000 0.000
#> SRR1203771 1 0.0000 1.000 1 0.000 0.000
#> SRR1203772 1 0.0000 1.000 1 0.000 0.000
#> SRR1203773 1 0.0000 1.000 1 0.000 0.000
#> SRR1203774 1 0.0000 1.000 1 0.000 0.000
#> SRR1203775 1 0.0000 1.000 1 0.000 0.000
#> SRR1203800 1 0.0000 1.000 1 0.000 0.000
#> SRR1203801 1 0.0000 1.000 1 0.000 0.000
#> SRR1203802 1 0.0000 1.000 1 0.000 0.000
#> SRR1203803 1 0.0000 1.000 1 0.000 0.000
#> SRR1203804 1 0.0000 1.000 1 0.000 0.000
#> SRR1203805 1 0.0000 1.000 1 0.000 0.000
#> SRR1203806 1 0.0000 1.000 1 0.000 0.000
#> SRR1203807 1 0.0000 1.000 1 0.000 0.000
#> SRR1203808 1 0.0000 1.000 1 0.000 0.000
#> SRR1203811 1 0.0000 1.000 1 0.000 0.000
#> SRR1203812 1 0.0000 1.000 1 0.000 0.000
#> SRR1203813 1 0.0000 1.000 1 0.000 0.000
#> SRR1203814 1 0.0000 1.000 1 0.000 0.000
#> SRR1203815 1 0.0000 1.000 1 0.000 0.000
#> SRR1203816 1 0.0000 1.000 1 0.000 0.000
#> SRR1203817 1 0.0000 1.000 1 0.000 0.000
#> SRR1203818 1 0.0000 1.000 1 0.000 0.000
#> SRR1203819 1 0.0000 1.000 1 0.000 0.000
#> SRR1203822 1 0.0000 1.000 1 0.000 0.000
#> SRR1203823 1 0.0000 1.000 1 0.000 0.000
#> SRR1203824 1 0.0000 1.000 1 0.000 0.000
#> SRR1203825 1 0.0000 1.000 1 0.000 0.000
#> SRR1203826 1 0.0000 1.000 1 0.000 0.000
#> SRR1203827 1 0.0000 1.000 1 0.000 0.000
#> SRR1203828 1 0.0000 1.000 1 0.000 0.000
#> SRR1203829 1 0.0000 1.000 1 0.000 0.000
#> SRR1203830 1 0.0000 1.000 1 0.000 0.000
#> SRR1203831 1 0.0000 1.000 1 0.000 0.000
#> SRR1203832 1 0.0000 1.000 1 0.000 0.000
#> SRR1203833 1 0.0000 1.000 1 0.000 0.000
#> SRR1203834 1 0.0000 1.000 1 0.000 0.000
#> SRR1203835 1 0.0000 1.000 1 0.000 0.000
#> SRR1203836 1 0.0000 1.000 1 0.000 0.000
#> SRR1203837 1 0.0000 1.000 1 0.000 0.000
#> SRR1203838 1 0.0000 1.000 1 0.000 0.000
#> SRR1203839 1 0.0000 1.000 1 0.000 0.000
#> SRR1203842 1 0.0000 1.000 1 0.000 0.000
#> SRR1203843 1 0.0000 1.000 1 0.000 0.000
#> SRR1203845 3 0.2796 0.895 0 0.092 0.908
#> SRR1203844 3 0.1163 0.949 0 0.028 0.972
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201590 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201593 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201592 2 0.0592 0.980 0 0.984 0.000 0.016
#> SRR1201617 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201616 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201619 2 0.1022 0.975 0 0.968 0.000 0.032
#> SRR1201618 4 0.0000 0.951 0 0.000 0.000 1.000
#> SRR1201620 2 0.1940 0.937 0 0.924 0.000 0.076
#> SRR1201621 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1201623 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201622 4 0.0921 0.966 0 0.000 0.028 0.972
#> SRR1201624 4 0.3172 0.835 0 0.000 0.160 0.840
#> SRR1201625 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201626 4 0.0921 0.966 0 0.000 0.028 0.972
#> SRR1201627 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201628 4 0.1022 0.967 0 0.000 0.032 0.968
#> SRR1201629 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201630 4 0.0000 0.951 0 0.000 0.000 1.000
#> SRR1201631 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201641 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201640 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201643 4 0.1022 0.967 0 0.000 0.032 0.968
#> SRR1201644 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201661 4 0.0895 0.951 0 0.020 0.004 0.976
#> SRR1201662 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201663 4 0.0921 0.966 0 0.000 0.028 0.972
#> SRR1201664 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201665 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201666 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201667 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201668 4 0.5207 0.588 0 0.292 0.028 0.680
#> SRR1201670 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201669 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201673 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201672 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201671 4 0.1545 0.964 0 0.008 0.040 0.952
#> SRR1201677 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201676 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201675 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201674 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201678 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201682 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201683 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201680 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201681 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201679 2 0.1022 0.975 0 0.968 0.000 0.032
#> SRR1201686 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201687 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201688 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201689 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201685 4 0.0921 0.966 0 0.000 0.028 0.972
#> SRR1201692 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201691 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201690 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201696 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201695 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201694 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201693 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201697 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201698 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201700 3 0.3569 0.745 0 0.000 0.804 0.196
#> SRR1201708 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201707 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201706 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201702 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201705 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201701 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201704 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201703 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201716 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201715 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201717 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201712 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201709 4 0.2868 0.874 0 0.000 0.136 0.864
#> SRR1201711 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201714 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201713 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201710 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201719 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201718 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201721 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201720 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201723 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201722 3 0.4008 0.675 0 0.000 0.756 0.244
#> SRR1201725 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201724 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201726 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201727 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201731 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201730 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201734 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201733 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201736 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201737 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201739 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201738 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201742 4 0.4250 0.639 0 0.276 0.000 0.724
#> SRR1201743 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201745 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1201744 2 0.2149 0.924 0 0.912 0.000 0.088
#> SRR1201749 4 0.3649 0.725 0 0.204 0.000 0.796
#> SRR1201750 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1201752 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201751 4 0.1118 0.967 0 0.000 0.036 0.964
#> SRR1201754 4 0.0524 0.951 0 0.008 0.004 0.988
#> SRR1201753 4 0.0469 0.948 0 0.012 0.000 0.988
#> SRR1201758 4 0.0921 0.966 0 0.000 0.028 0.972
#> SRR1201759 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201760 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201761 4 0.4431 0.612 0 0.000 0.304 0.696
#> SRR1201763 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201762 4 0.0921 0.966 0 0.000 0.028 0.972
#> SRR1201764 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201766 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201768 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201769 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201767 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201770 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201771 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201772 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201773 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201774 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201786 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201784 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201785 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201778 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1201779 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201781 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201780 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201783 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201782 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201798 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201797 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201796 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201795 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201799 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201794 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201793 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201792 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201791 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1201807 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1201808 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1201803 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1201804 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1201805 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1201806 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1201801 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1201802 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1201800 2 0.4804 0.414 0 0.616 0.000 0.384
#> SRR1201814 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1201816 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1201815 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1201819 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1201820 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1201813 2 0.3024 0.852 0 0.852 0.000 0.148
#> SRR1201817 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1201818 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1201825 4 0.0921 0.966 0 0.000 0.028 0.972
#> SRR1201827 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201828 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201826 4 0.1118 0.967 0 0.000 0.036 0.964
#> SRR1201829 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201830 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201831 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201832 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201833 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201865 4 0.0921 0.966 0 0.000 0.028 0.972
#> SRR1201866 4 0.0921 0.966 0 0.000 0.028 0.972
#> SRR1201867 4 0.0921 0.966 0 0.000 0.028 0.972
#> SRR1201861 4 0.0921 0.966 0 0.000 0.028 0.972
#> SRR1201862 4 0.0921 0.966 0 0.000 0.028 0.972
#> SRR1201863 4 0.0921 0.966 0 0.000 0.028 0.972
#> SRR1201859 4 0.0000 0.951 0 0.000 0.000 1.000
#> SRR1201864 4 0.0921 0.966 0 0.000 0.028 0.972
#> SRR1201860 4 0.0921 0.966 0 0.000 0.028 0.972
#> SRR1201873 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201871 4 0.0921 0.966 0 0.000 0.028 0.972
#> SRR1201872 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201980 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1201979 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201982 3 0.1474 0.938 0 0.000 0.948 0.052
#> SRR1201981 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201998 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201996 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1201997 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1202005 4 0.0592 0.948 0 0.016 0.000 0.984
#> SRR1202006 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1202088 2 0.1389 0.946 0 0.952 0.048 0.000
#> SRR1202087 2 0.0188 0.981 0 0.996 0.004 0.000
#> SRR1202093 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1202092 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1202288 2 0.0188 0.983 0 0.996 0.000 0.004
#> SRR1202289 2 0.0000 0.984 0 1.000 0.000 0.000
#> SRR1202299 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1202298 2 0.1302 0.967 0 0.956 0.000 0.044
#> SRR1202303 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1202372 2 0.0921 0.977 0 0.972 0.000 0.028
#> SRR1202371 2 0.1022 0.975 0 0.968 0.000 0.032
#> SRR1202563 4 0.0000 0.951 0 0.000 0.000 1.000
#> SRR1202565 4 0.1716 0.949 0 0.000 0.064 0.936
#> SRR1202564 4 0.1792 0.946 0 0.000 0.068 0.932
#> SRR1202649 4 0.0000 0.951 0 0.000 0.000 1.000
#> SRR1202650 4 0.0000 0.951 0 0.000 0.000 1.000
#> SRR1202651 4 0.0469 0.955 0 0.000 0.012 0.988
#> SRR1202843 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1202844 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1202845 4 0.0469 0.948 0 0.012 0.000 0.988
#> SRR1202847 4 0.1211 0.944 0 0.040 0.000 0.960
#> SRR1202846 4 0.1388 0.964 0 0.012 0.028 0.960
#> SRR1202945 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1202949 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1202977 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1202978 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1202979 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1202990 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1202999 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203005 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203006 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203007 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203009 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203008 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203010 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203011 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203025 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203026 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203027 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203061 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203089 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203125 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203128 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203129 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203130 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203132 3 0.0000 0.991 0 0.000 1.000 0.000
#> SRR1203131 4 0.1211 0.967 0 0.000 0.040 0.960
#> SRR1203133 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203138 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203760 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203761 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203770 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203771 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203772 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203773 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203774 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203775 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203800 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203801 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203802 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203803 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203804 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203805 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203806 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203807 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203808 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203811 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203812 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203813 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203814 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203815 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203816 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203817 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203818 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203819 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203822 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203823 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203824 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203825 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203826 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203827 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203828 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203829 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203830 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203831 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203832 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203833 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203834 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203835 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203836 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203837 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203838 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203839 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203842 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203843 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203845 4 0.1211 0.944 0 0.040 0.000 0.960
#> SRR1203844 4 0.0592 0.948 0 0.016 0.000 0.984
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201590 2 0.1043 0.933 0 0.960 0.000 0.040 0.000
#> SRR1201593 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201592 2 0.4201 0.312 0 0.592 0.000 0.408 0.000
#> SRR1201617 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201616 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201619 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201618 4 0.1121 0.943 0 0.000 0.000 0.956 0.044
#> SRR1201620 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201621 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201623 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201622 5 0.0000 0.761 0 0.000 0.000 0.000 1.000
#> SRR1201624 5 0.0162 0.761 0 0.000 0.004 0.000 0.996
#> SRR1201625 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201626 5 0.0000 0.761 0 0.000 0.000 0.000 1.000
#> SRR1201627 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201628 5 0.3210 0.797 0 0.000 0.212 0.000 0.788
#> SRR1201629 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201630 5 0.3143 0.683 0 0.000 0.000 0.204 0.796
#> SRR1201631 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201641 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201640 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201643 5 0.2773 0.799 0 0.000 0.164 0.000 0.836
#> SRR1201644 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201661 5 0.5132 0.675 0 0.092 0.012 0.184 0.712
#> SRR1201662 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201663 5 0.0000 0.761 0 0.000 0.000 0.000 1.000
#> SRR1201664 3 0.0510 0.970 0 0.000 0.984 0.000 0.016
#> SRR1201665 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201666 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201667 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201668 5 0.3895 0.332 0 0.320 0.000 0.000 0.680
#> SRR1201670 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201669 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201673 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201672 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201671 5 0.4003 0.783 0 0.008 0.288 0.000 0.704
#> SRR1201677 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201676 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201675 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201674 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201678 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201682 2 0.3109 0.768 0 0.800 0.000 0.200 0.000
#> SRR1201683 2 0.3109 0.768 0 0.800 0.000 0.200 0.000
#> SRR1201680 2 0.3109 0.768 0 0.800 0.000 0.200 0.000
#> SRR1201681 2 0.3109 0.768 0 0.800 0.000 0.200 0.000
#> SRR1201679 4 0.0880 0.960 0 0.032 0.000 0.968 0.000
#> SRR1201686 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201687 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201688 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201689 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201685 5 0.0000 0.761 0 0.000 0.000 0.000 1.000
#> SRR1201692 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201691 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201690 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201696 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201695 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201694 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201693 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201697 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201698 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201700 3 0.3210 0.639 0 0.000 0.788 0.000 0.212
#> SRR1201708 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201707 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201706 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201702 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201705 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201701 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201704 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201703 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201716 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201715 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201717 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201712 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201709 5 0.3857 0.758 0 0.000 0.312 0.000 0.688
#> SRR1201711 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201714 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201713 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201710 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201719 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201718 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201721 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201720 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201723 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201722 3 0.3895 0.453 0 0.000 0.680 0.000 0.320
#> SRR1201725 5 0.3774 0.779 0 0.000 0.296 0.000 0.704
#> SRR1201724 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201726 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201727 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201731 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201730 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201734 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201733 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201736 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201737 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201739 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201738 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201742 5 0.5408 0.265 0 0.408 0.000 0.060 0.532
#> SRR1201743 2 0.3109 0.768 0 0.800 0.000 0.200 0.000
#> SRR1201745 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201744 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201749 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201750 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201752 3 0.0510 0.970 0 0.000 0.984 0.000 0.016
#> SRR1201751 5 0.3586 0.791 0 0.000 0.264 0.000 0.736
#> SRR1201754 5 0.3816 0.601 0 0.000 0.000 0.304 0.696
#> SRR1201753 5 0.4101 0.489 0 0.000 0.000 0.372 0.628
#> SRR1201758 5 0.0000 0.761 0 0.000 0.000 0.000 1.000
#> SRR1201759 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201760 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201761 5 0.4268 0.516 0 0.000 0.444 0.000 0.556
#> SRR1201763 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201762 5 0.0000 0.761 0 0.000 0.000 0.000 1.000
#> SRR1201764 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201766 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201768 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201769 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201767 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201770 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201771 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201772 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201773 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201774 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201786 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201784 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201785 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201778 4 0.2813 0.795 0 0.168 0.000 0.832 0.000
#> SRR1201779 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201781 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201780 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201783 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201782 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201798 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201797 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201796 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201795 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201799 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201794 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201793 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201792 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201791 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1201807 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201808 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201803 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201804 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201805 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201806 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201801 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201802 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201800 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201814 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201816 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201815 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201819 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201820 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201813 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201817 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201818 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1201825 5 0.0000 0.761 0 0.000 0.000 0.000 1.000
#> SRR1201827 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201828 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201826 5 0.2648 0.799 0 0.000 0.152 0.000 0.848
#> SRR1201829 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201830 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201831 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201832 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201833 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1201865 5 0.0000 0.761 0 0.000 0.000 0.000 1.000
#> SRR1201866 5 0.0000 0.761 0 0.000 0.000 0.000 1.000
#> SRR1201867 5 0.0000 0.761 0 0.000 0.000 0.000 1.000
#> SRR1201861 5 0.0000 0.761 0 0.000 0.000 0.000 1.000
#> SRR1201862 5 0.0000 0.761 0 0.000 0.000 0.000 1.000
#> SRR1201863 5 0.0000 0.761 0 0.000 0.000 0.000 1.000
#> SRR1201859 5 0.0000 0.761 0 0.000 0.000 0.000 1.000
#> SRR1201864 5 0.0000 0.761 0 0.000 0.000 0.000 1.000
#> SRR1201860 5 0.0000 0.761 0 0.000 0.000 0.000 1.000
#> SRR1201873 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201871 5 0.0000 0.761 0 0.000 0.000 0.000 1.000
#> SRR1201872 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201980 3 0.0510 0.970 0 0.000 0.984 0.000 0.016
#> SRR1201979 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201982 3 0.1544 0.902 0 0.000 0.932 0.000 0.068
#> SRR1201981 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201998 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1201996 5 0.3957 0.787 0 0.008 0.280 0.000 0.712
#> SRR1201997 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1202005 5 0.3861 0.625 0 0.004 0.000 0.284 0.712
#> SRR1202006 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1202088 2 0.2280 0.818 0 0.880 0.120 0.000 0.000
#> SRR1202087 2 0.0798 0.941 0 0.976 0.016 0.000 0.008
#> SRR1202093 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1202092 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1202288 2 0.2329 0.847 0 0.876 0.000 0.124 0.000
#> SRR1202289 2 0.0000 0.964 0 1.000 0.000 0.000 0.000
#> SRR1202299 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1202298 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1202303 3 0.0000 0.986 0 0.000 1.000 0.000 0.000
#> SRR1202372 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1202371 4 0.0000 0.991 0 0.000 0.000 1.000 0.000
#> SRR1202563 5 0.0510 0.752 0 0.000 0.000 0.016 0.984
#> SRR1202565 5 0.3857 0.760 0 0.000 0.312 0.000 0.688
#> SRR1202564 5 0.3876 0.755 0 0.000 0.316 0.000 0.684
#> SRR1202649 5 0.0290 0.757 0 0.000 0.000 0.008 0.992
#> SRR1202650 5 0.0609 0.758 0 0.000 0.000 0.020 0.980
#> SRR1202651 5 0.3816 0.601 0 0.000 0.000 0.304 0.696
#> SRR1202843 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202845 5 0.3730 0.622 0 0.000 0.000 0.288 0.712
#> SRR1202847 5 0.4964 0.755 0 0.156 0.132 0.000 0.712
#> SRR1202846 5 0.4243 0.787 0 0.024 0.264 0.000 0.712
#> SRR1202945 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.0510 0.970 0 0.000 0.984 0.000 0.016
#> SRR1203131 5 0.3730 0.786 0 0.000 0.288 0.000 0.712
#> SRR1203133 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203827 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203828 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203842 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203843 1 0.0000 1.000 1 0.000 0.000 0.000 0.000
#> SRR1203845 5 0.3816 0.582 0 0.304 0.000 0.000 0.696
#> SRR1203844 5 0.4206 0.612 0 0.016 0.000 0.288 0.696
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201590 2 0.0937 0.934 0 0.960 0.000 0.000 0.000 0.040
#> SRR1201593 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201592 2 0.3756 0.336 0 0.600 0.000 0.000 0.000 0.400
#> SRR1201617 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201616 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201619 6 0.0865 0.956 0 0.000 0.000 0.000 0.036 0.964
#> SRR1201618 6 0.1333 0.929 0 0.000 0.000 0.048 0.008 0.944
#> SRR1201620 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201621 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201623 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201622 5 0.1007 0.897 0 0.000 0.000 0.044 0.956 0.000
#> SRR1201624 5 0.0937 0.898 0 0.000 0.000 0.040 0.960 0.000
#> SRR1201625 3 0.0146 0.984 0 0.000 0.996 0.004 0.000 0.000
#> SRR1201626 5 0.3050 0.739 0 0.000 0.000 0.236 0.764 0.000
#> SRR1201627 3 0.0146 0.984 0 0.000 0.996 0.004 0.000 0.000
#> SRR1201628 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201629 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201630 4 0.0146 0.951 0 0.000 0.000 0.996 0.000 0.004
#> SRR1201631 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201641 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201640 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201643 4 0.0146 0.951 0 0.000 0.000 0.996 0.004 0.000
#> SRR1201644 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201661 4 0.0146 0.951 0 0.000 0.000 0.996 0.000 0.004
#> SRR1201662 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201663 5 0.0937 0.898 0 0.000 0.000 0.040 0.960 0.000
#> SRR1201664 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201665 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201666 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201667 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201668 5 0.1500 0.839 0 0.052 0.000 0.012 0.936 0.000
#> SRR1201670 3 0.0865 0.968 0 0.000 0.964 0.000 0.036 0.000
#> SRR1201669 3 0.0865 0.968 0 0.000 0.964 0.000 0.036 0.000
#> SRR1201673 3 0.0865 0.968 0 0.000 0.964 0.000 0.036 0.000
#> SRR1201672 3 0.0865 0.968 0 0.000 0.964 0.000 0.036 0.000
#> SRR1201671 4 0.1340 0.909 0 0.008 0.004 0.948 0.040 0.000
#> SRR1201677 3 0.0865 0.968 0 0.000 0.964 0.000 0.036 0.000
#> SRR1201676 3 0.0865 0.968 0 0.000 0.964 0.000 0.036 0.000
#> SRR1201675 3 0.0865 0.968 0 0.000 0.964 0.000 0.036 0.000
#> SRR1201674 3 0.0865 0.968 0 0.000 0.964 0.000 0.036 0.000
#> SRR1201678 3 0.0865 0.968 0 0.000 0.964 0.000 0.036 0.000
#> SRR1201682 2 0.3319 0.787 0 0.800 0.000 0.000 0.036 0.164
#> SRR1201683 2 0.3319 0.787 0 0.800 0.000 0.000 0.036 0.164
#> SRR1201680 2 0.3319 0.787 0 0.800 0.000 0.000 0.036 0.164
#> SRR1201681 2 0.3319 0.787 0 0.800 0.000 0.000 0.036 0.164
#> SRR1201679 6 0.0790 0.953 0 0.032 0.000 0.000 0.000 0.968
#> SRR1201686 3 0.0865 0.968 0 0.000 0.964 0.000 0.036 0.000
#> SRR1201687 3 0.0865 0.968 0 0.000 0.964 0.000 0.036 0.000
#> SRR1201688 3 0.0865 0.968 0 0.000 0.964 0.000 0.036 0.000
#> SRR1201689 3 0.0865 0.968 0 0.000 0.964 0.000 0.036 0.000
#> SRR1201685 5 0.0865 0.899 0 0.000 0.000 0.036 0.964 0.000
#> SRR1201692 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201691 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201690 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201696 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201695 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201694 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201693 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201697 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201698 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201700 3 0.2762 0.728 0 0.000 0.804 0.196 0.000 0.000
#> SRR1201708 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201707 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201706 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201702 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201705 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201701 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201704 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201703 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201716 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201715 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201717 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201712 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201709 5 0.3236 0.785 0 0.000 0.024 0.180 0.796 0.000
#> SRR1201711 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201714 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201713 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201710 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201719 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201718 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201721 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201720 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201723 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201722 5 0.5521 0.336 0 0.000 0.376 0.136 0.488 0.000
#> SRR1201725 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201724 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201726 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201727 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201731 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201730 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201734 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201733 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201736 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201737 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201739 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201738 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201742 4 0.6002 0.155 0 0.224 0.000 0.516 0.248 0.012
#> SRR1201743 2 0.3319 0.787 0 0.800 0.000 0.000 0.036 0.164
#> SRR1201745 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201744 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201749 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201750 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201752 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201751 4 0.3565 0.496 0 0.000 0.004 0.692 0.304 0.000
#> SRR1201754 4 0.0146 0.951 0 0.000 0.000 0.996 0.000 0.004
#> SRR1201753 4 0.2631 0.740 0 0.000 0.000 0.820 0.000 0.180
#> SRR1201758 5 0.0865 0.899 0 0.000 0.000 0.036 0.964 0.000
#> SRR1201759 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201760 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201761 4 0.3351 0.517 0 0.000 0.288 0.712 0.000 0.000
#> SRR1201763 3 0.0146 0.984 0 0.000 0.996 0.004 0.000 0.000
#> SRR1201762 5 0.3782 0.414 0 0.000 0.000 0.412 0.588 0.000
#> SRR1201764 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201766 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201768 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201769 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201767 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201770 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201771 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201772 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201773 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201774 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201786 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201784 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201785 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201778 6 0.2527 0.773 0 0.168 0.000 0.000 0.000 0.832
#> SRR1201779 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201781 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201780 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201783 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201782 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201798 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201797 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201796 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201795 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201799 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201794 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201793 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201792 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201791 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201807 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201808 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201803 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201804 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201805 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201806 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201801 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201802 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201800 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201814 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201816 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201815 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201819 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201820 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201813 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201817 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201818 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201825 5 0.2631 0.804 0 0.000 0.000 0.180 0.820 0.000
#> SRR1201827 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201828 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201826 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201829 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201830 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201831 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201832 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201833 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201865 5 0.0865 0.899 0 0.000 0.000 0.036 0.964 0.000
#> SRR1201866 5 0.0865 0.899 0 0.000 0.000 0.036 0.964 0.000
#> SRR1201867 5 0.0865 0.899 0 0.000 0.000 0.036 0.964 0.000
#> SRR1201861 5 0.0865 0.899 0 0.000 0.000 0.036 0.964 0.000
#> SRR1201862 5 0.0865 0.899 0 0.000 0.000 0.036 0.964 0.000
#> SRR1201863 5 0.0865 0.899 0 0.000 0.000 0.036 0.964 0.000
#> SRR1201859 5 0.0865 0.899 0 0.000 0.000 0.036 0.964 0.000
#> SRR1201864 5 0.0865 0.899 0 0.000 0.000 0.036 0.964 0.000
#> SRR1201860 5 0.0865 0.899 0 0.000 0.000 0.036 0.964 0.000
#> SRR1201873 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201871 5 0.2219 0.844 0 0.000 0.000 0.136 0.864 0.000
#> SRR1201872 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201980 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201979 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201982 3 0.1141 0.934 0 0.000 0.948 0.052 0.000 0.000
#> SRR1201981 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201998 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201996 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1201997 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1202005 4 0.0146 0.951 0 0.000 0.000 0.996 0.000 0.004
#> SRR1202006 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1202088 2 0.1408 0.923 0 0.944 0.020 0.000 0.036 0.000
#> SRR1202087 2 0.0865 0.939 0 0.964 0.000 0.000 0.036 0.000
#> SRR1202093 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1202092 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1202288 2 0.2048 0.855 0 0.880 0.000 0.000 0.000 0.120
#> SRR1202289 2 0.0000 0.966 0 1.000 0.000 0.000 0.000 0.000
#> SRR1202299 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1202298 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1202303 3 0.0146 0.984 0 0.000 0.996 0.004 0.000 0.000
#> SRR1202372 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1202371 6 0.0000 0.988 0 0.000 0.000 0.000 0.000 1.000
#> SRR1202563 5 0.3765 0.431 0 0.000 0.000 0.404 0.596 0.000
#> SRR1202565 4 0.0713 0.929 0 0.000 0.028 0.972 0.000 0.000
#> SRR1202564 4 0.0790 0.924 0 0.000 0.032 0.968 0.000 0.000
#> SRR1202649 4 0.3330 0.548 0 0.000 0.000 0.716 0.284 0.000
#> SRR1202650 4 0.1910 0.846 0 0.000 0.000 0.892 0.108 0.000
#> SRR1202651 4 0.0146 0.951 0 0.000 0.000 0.996 0.000 0.004
#> SRR1202843 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202845 4 0.0146 0.951 0 0.000 0.000 0.996 0.000 0.004
#> SRR1202847 4 0.0146 0.950 0 0.004 0.000 0.996 0.000 0.000
#> SRR1202846 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1202945 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.0000 0.987 0 0.000 1.000 0.000 0.000 0.000
#> SRR1203131 4 0.0146 0.954 0 0.000 0.004 0.996 0.000 0.000
#> SRR1203133 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203827 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203828 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203842 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203843 1 0.0000 1.000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203845 4 0.0146 0.950 0 0.004 0.000 0.996 0.000 0.000
#> SRR1203844 4 0.0146 0.951 0 0.000 0.000 0.996 0.000 0.004
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["MAD", "mclust"]
# you can also extract it by
# res = res_list["MAD:mclust"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'MAD' method.
#> Subgroups are detected by 'mclust' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 4.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.3761 0.625 0.625
#> 3 3 0.750 0.900 0.926 0.5737 0.800 0.680
#> 4 4 0.949 0.953 0.962 0.2358 0.829 0.598
#> 5 5 0.821 0.709 0.843 0.0506 0.983 0.936
#> 6 6 0.837 0.805 0.881 0.0427 0.931 0.727
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 4
#> attr(,"optional")
#> [1] 2
There is also optional best \(k\) = 2 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0 1 0 1
#> SRR1201590 2 0 1 0 1
#> SRR1201593 2 0 1 0 1
#> SRR1201592 2 0 1 0 1
#> SRR1201617 2 0 1 0 1
#> SRR1201616 2 0 1 0 1
#> SRR1201619 2 0 1 0 1
#> SRR1201618 2 0 1 0 1
#> SRR1201620 2 0 1 0 1
#> SRR1201621 2 0 1 0 1
#> SRR1201623 2 0 1 0 1
#> SRR1201622 2 0 1 0 1
#> SRR1201624 2 0 1 0 1
#> SRR1201625 2 0 1 0 1
#> SRR1201626 2 0 1 0 1
#> SRR1201627 2 0 1 0 1
#> SRR1201628 2 0 1 0 1
#> SRR1201629 2 0 1 0 1
#> SRR1201630 2 0 1 0 1
#> SRR1201631 2 0 1 0 1
#> SRR1201641 2 0 1 0 1
#> SRR1201640 2 0 1 0 1
#> SRR1201643 2 0 1 0 1
#> SRR1201644 2 0 1 0 1
#> SRR1201661 2 0 1 0 1
#> SRR1201662 2 0 1 0 1
#> SRR1201663 2 0 1 0 1
#> SRR1201664 2 0 1 0 1
#> SRR1201665 2 0 1 0 1
#> SRR1201666 2 0 1 0 1
#> SRR1201667 2 0 1 0 1
#> SRR1201668 2 0 1 0 1
#> SRR1201670 2 0 1 0 1
#> SRR1201669 2 0 1 0 1
#> SRR1201673 2 0 1 0 1
#> SRR1201672 2 0 1 0 1
#> SRR1201671 2 0 1 0 1
#> SRR1201677 2 0 1 0 1
#> SRR1201676 2 0 1 0 1
#> SRR1201675 2 0 1 0 1
#> SRR1201674 2 0 1 0 1
#> SRR1201678 2 0 1 0 1
#> SRR1201682 2 0 1 0 1
#> SRR1201683 2 0 1 0 1
#> SRR1201680 2 0 1 0 1
#> SRR1201681 2 0 1 0 1
#> SRR1201679 2 0 1 0 1
#> SRR1201686 2 0 1 0 1
#> SRR1201687 2 0 1 0 1
#> SRR1201688 2 0 1 0 1
#> SRR1201689 2 0 1 0 1
#> SRR1201685 2 0 1 0 1
#> SRR1201692 2 0 1 0 1
#> SRR1201691 2 0 1 0 1
#> SRR1201690 2 0 1 0 1
#> SRR1201696 2 0 1 0 1
#> SRR1201695 2 0 1 0 1
#> SRR1201694 2 0 1 0 1
#> SRR1201693 2 0 1 0 1
#> SRR1201697 2 0 1 0 1
#> SRR1201698 2 0 1 0 1
#> SRR1201700 2 0 1 0 1
#> SRR1201708 2 0 1 0 1
#> SRR1201707 2 0 1 0 1
#> SRR1201706 2 0 1 0 1
#> SRR1201702 2 0 1 0 1
#> SRR1201705 2 0 1 0 1
#> SRR1201701 2 0 1 0 1
#> SRR1201704 2 0 1 0 1
#> SRR1201703 2 0 1 0 1
#> SRR1201716 2 0 1 0 1
#> SRR1201715 2 0 1 0 1
#> SRR1201717 2 0 1 0 1
#> SRR1201712 2 0 1 0 1
#> SRR1201709 2 0 1 0 1
#> SRR1201711 2 0 1 0 1
#> SRR1201714 2 0 1 0 1
#> SRR1201713 2 0 1 0 1
#> SRR1201710 2 0 1 0 1
#> SRR1201719 2 0 1 0 1
#> SRR1201718 2 0 1 0 1
#> SRR1201721 2 0 1 0 1
#> SRR1201720 2 0 1 0 1
#> SRR1201723 2 0 1 0 1
#> SRR1201722 2 0 1 0 1
#> SRR1201725 2 0 1 0 1
#> SRR1201724 2 0 1 0 1
#> SRR1201726 2 0 1 0 1
#> SRR1201727 2 0 1 0 1
#> SRR1201731 2 0 1 0 1
#> SRR1201730 2 0 1 0 1
#> SRR1201734 2 0 1 0 1
#> SRR1201733 2 0 1 0 1
#> SRR1201736 2 0 1 0 1
#> SRR1201737 2 0 1 0 1
#> SRR1201739 2 0 1 0 1
#> SRR1201738 2 0 1 0 1
#> SRR1201742 2 0 1 0 1
#> SRR1201743 2 0 1 0 1
#> SRR1201745 2 0 1 0 1
#> SRR1201744 2 0 1 0 1
#> SRR1201749 2 0 1 0 1
#> SRR1201750 2 0 1 0 1
#> SRR1201752 2 0 1 0 1
#> SRR1201751 2 0 1 0 1
#> SRR1201754 2 0 1 0 1
#> SRR1201753 2 0 1 0 1
#> SRR1201758 2 0 1 0 1
#> SRR1201759 2 0 1 0 1
#> SRR1201760 2 0 1 0 1
#> SRR1201761 2 0 1 0 1
#> SRR1201763 2 0 1 0 1
#> SRR1201762 2 0 1 0 1
#> SRR1201764 2 0 1 0 1
#> SRR1201766 2 0 1 0 1
#> SRR1201768 2 0 1 0 1
#> SRR1201769 2 0 1 0 1
#> SRR1201767 2 0 1 0 1
#> SRR1201770 2 0 1 0 1
#> SRR1201771 2 0 1 0 1
#> SRR1201772 2 0 1 0 1
#> SRR1201773 2 0 1 0 1
#> SRR1201774 2 0 1 0 1
#> SRR1201786 2 0 1 0 1
#> SRR1201784 2 0 1 0 1
#> SRR1201785 2 0 1 0 1
#> SRR1201778 2 0 1 0 1
#> SRR1201779 2 0 1 0 1
#> SRR1201781 2 0 1 0 1
#> SRR1201780 2 0 1 0 1
#> SRR1201783 2 0 1 0 1
#> SRR1201782 2 0 1 0 1
#> SRR1201798 2 0 1 0 1
#> SRR1201797 2 0 1 0 1
#> SRR1201796 2 0 1 0 1
#> SRR1201795 2 0 1 0 1
#> SRR1201799 2 0 1 0 1
#> SRR1201794 2 0 1 0 1
#> SRR1201793 2 0 1 0 1
#> SRR1201792 2 0 1 0 1
#> SRR1201791 2 0 1 0 1
#> SRR1201807 2 0 1 0 1
#> SRR1201808 2 0 1 0 1
#> SRR1201803 2 0 1 0 1
#> SRR1201804 2 0 1 0 1
#> SRR1201805 2 0 1 0 1
#> SRR1201806 2 0 1 0 1
#> SRR1201801 2 0 1 0 1
#> SRR1201802 2 0 1 0 1
#> SRR1201800 2 0 1 0 1
#> SRR1201814 2 0 1 0 1
#> SRR1201816 2 0 1 0 1
#> SRR1201815 2 0 1 0 1
#> SRR1201819 2 0 1 0 1
#> SRR1201820 2 0 1 0 1
#> SRR1201813 2 0 1 0 1
#> SRR1201817 2 0 1 0 1
#> SRR1201818 2 0 1 0 1
#> SRR1201825 2 0 1 0 1
#> SRR1201827 2 0 1 0 1
#> SRR1201828 2 0 1 0 1
#> SRR1201826 2 0 1 0 1
#> SRR1201829 2 0 1 0 1
#> SRR1201830 2 0 1 0 1
#> SRR1201831 2 0 1 0 1
#> SRR1201832 2 0 1 0 1
#> SRR1201833 2 0 1 0 1
#> SRR1201865 2 0 1 0 1
#> SRR1201866 2 0 1 0 1
#> SRR1201867 2 0 1 0 1
#> SRR1201861 2 0 1 0 1
#> SRR1201862 2 0 1 0 1
#> SRR1201863 2 0 1 0 1
#> SRR1201859 2 0 1 0 1
#> SRR1201864 2 0 1 0 1
#> SRR1201860 2 0 1 0 1
#> SRR1201873 2 0 1 0 1
#> SRR1201871 2 0 1 0 1
#> SRR1201872 2 0 1 0 1
#> SRR1201980 2 0 1 0 1
#> SRR1201979 2 0 1 0 1
#> SRR1201982 2 0 1 0 1
#> SRR1201981 2 0 1 0 1
#> SRR1201998 2 0 1 0 1
#> SRR1201996 2 0 1 0 1
#> SRR1201997 2 0 1 0 1
#> SRR1202005 2 0 1 0 1
#> SRR1202006 2 0 1 0 1
#> SRR1202088 2 0 1 0 1
#> SRR1202087 2 0 1 0 1
#> SRR1202093 2 0 1 0 1
#> SRR1202092 2 0 1 0 1
#> SRR1202288 2 0 1 0 1
#> SRR1202289 2 0 1 0 1
#> SRR1202299 2 0 1 0 1
#> SRR1202298 2 0 1 0 1
#> SRR1202303 2 0 1 0 1
#> SRR1202372 2 0 1 0 1
#> SRR1202371 2 0 1 0 1
#> SRR1202563 2 0 1 0 1
#> SRR1202565 2 0 1 0 1
#> SRR1202564 2 0 1 0 1
#> SRR1202649 2 0 1 0 1
#> SRR1202650 2 0 1 0 1
#> SRR1202651 2 0 1 0 1
#> SRR1202843 1 0 1 1 0
#> SRR1202844 1 0 1 1 0
#> SRR1202845 2 0 1 0 1
#> SRR1202847 2 0 1 0 1
#> SRR1202846 2 0 1 0 1
#> SRR1202945 1 0 1 1 0
#> SRR1202949 1 0 1 1 0
#> SRR1202977 1 0 1 1 0
#> SRR1202978 1 0 1 1 0
#> SRR1202979 1 0 1 1 0
#> SRR1202990 1 0 1 1 0
#> SRR1202999 1 0 1 1 0
#> SRR1203005 1 0 1 1 0
#> SRR1203006 1 0 1 1 0
#> SRR1203007 1 0 1 1 0
#> SRR1203009 1 0 1 1 0
#> SRR1203008 1 0 1 1 0
#> SRR1203010 1 0 1 1 0
#> SRR1203011 1 0 1 1 0
#> SRR1203025 1 0 1 1 0
#> SRR1203026 1 0 1 1 0
#> SRR1203027 1 0 1 1 0
#> SRR1203061 1 0 1 1 0
#> SRR1203089 1 0 1 1 0
#> SRR1203125 1 0 1 1 0
#> SRR1203128 1 0 1 1 0
#> SRR1203129 1 0 1 1 0
#> SRR1203130 1 0 1 1 0
#> SRR1203132 2 0 1 0 1
#> SRR1203131 2 0 1 0 1
#> SRR1203133 1 0 1 1 0
#> SRR1203138 1 0 1 1 0
#> SRR1203760 1 0 1 1 0
#> SRR1203761 1 0 1 1 0
#> SRR1203770 1 0 1 1 0
#> SRR1203771 1 0 1 1 0
#> SRR1203772 1 0 1 1 0
#> SRR1203773 1 0 1 1 0
#> SRR1203774 1 0 1 1 0
#> SRR1203775 1 0 1 1 0
#> SRR1203800 1 0 1 1 0
#> SRR1203801 1 0 1 1 0
#> SRR1203802 1 0 1 1 0
#> SRR1203803 1 0 1 1 0
#> SRR1203804 1 0 1 1 0
#> SRR1203805 1 0 1 1 0
#> SRR1203806 1 0 1 1 0
#> SRR1203807 1 0 1 1 0
#> SRR1203808 1 0 1 1 0
#> SRR1203811 1 0 1 1 0
#> SRR1203812 1 0 1 1 0
#> SRR1203813 1 0 1 1 0
#> SRR1203814 1 0 1 1 0
#> SRR1203815 1 0 1 1 0
#> SRR1203816 1 0 1 1 0
#> SRR1203817 1 0 1 1 0
#> SRR1203818 1 0 1 1 0
#> SRR1203819 1 0 1 1 0
#> SRR1203822 1 0 1 1 0
#> SRR1203823 1 0 1 1 0
#> SRR1203824 1 0 1 1 0
#> SRR1203825 1 0 1 1 0
#> SRR1203826 1 0 1 1 0
#> SRR1203827 2 0 1 0 1
#> SRR1203828 1 0 1 1 0
#> SRR1203829 1 0 1 1 0
#> SRR1203830 1 0 1 1 0
#> SRR1203831 1 0 1 1 0
#> SRR1203832 1 0 1 1 0
#> SRR1203833 1 0 1 1 0
#> SRR1203834 1 0 1 1 0
#> SRR1203835 1 0 1 1 0
#> SRR1203836 1 0 1 1 0
#> SRR1203837 1 0 1 1 0
#> SRR1203838 1 0 1 1 0
#> SRR1203839 1 0 1 1 0
#> SRR1203842 2 0 1 0 1
#> SRR1203843 1 0 1 1 0
#> SRR1203845 2 0 1 0 1
#> SRR1203844 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 3 0.0000 0.986 0 0.000 1.000
#> SRR1201590 2 0.0000 0.852 0 1.000 0.000
#> SRR1201593 3 0.0000 0.986 0 0.000 1.000
#> SRR1201592 2 0.0000 0.852 0 1.000 0.000
#> SRR1201617 3 0.0000 0.986 0 0.000 1.000
#> SRR1201616 2 0.0000 0.852 0 1.000 0.000
#> SRR1201619 2 0.5058 0.834 0 0.756 0.244
#> SRR1201618 2 0.0000 0.852 0 1.000 0.000
#> SRR1201620 2 0.0000 0.852 0 1.000 0.000
#> SRR1201621 3 0.0000 0.986 0 0.000 1.000
#> SRR1201623 2 0.4974 0.836 0 0.764 0.236
#> SRR1201622 2 0.0000 0.852 0 1.000 0.000
#> SRR1201624 2 0.0000 0.852 0 1.000 0.000
#> SRR1201625 2 0.0000 0.852 0 1.000 0.000
#> SRR1201626 2 0.0000 0.852 0 1.000 0.000
#> SRR1201627 2 0.0000 0.852 0 1.000 0.000
#> SRR1201628 2 0.0000 0.852 0 1.000 0.000
#> SRR1201629 2 0.5058 0.834 0 0.756 0.244
#> SRR1201630 2 0.0000 0.852 0 1.000 0.000
#> SRR1201631 2 0.5098 0.830 0 0.752 0.248
#> SRR1201641 2 0.5098 0.830 0 0.752 0.248
#> SRR1201640 2 0.0000 0.852 0 1.000 0.000
#> SRR1201643 2 0.0000 0.852 0 1.000 0.000
#> SRR1201644 2 0.5058 0.834 0 0.756 0.244
#> SRR1201661 2 0.0000 0.852 0 1.000 0.000
#> SRR1201662 2 0.5058 0.834 0 0.756 0.244
#> SRR1201663 2 0.0000 0.852 0 1.000 0.000
#> SRR1201664 2 0.0000 0.852 0 1.000 0.000
#> SRR1201665 2 0.0000 0.852 0 1.000 0.000
#> SRR1201666 2 0.5291 0.810 0 0.732 0.268
#> SRR1201667 2 0.5254 0.814 0 0.736 0.264
#> SRR1201668 2 0.0000 0.852 0 1.000 0.000
#> SRR1201670 2 0.5058 0.834 0 0.756 0.244
#> SRR1201669 2 0.5058 0.834 0 0.756 0.244
#> SRR1201673 2 0.5058 0.834 0 0.756 0.244
#> SRR1201672 2 0.5058 0.834 0 0.756 0.244
#> SRR1201671 2 0.0000 0.852 0 1.000 0.000
#> SRR1201677 2 0.5058 0.834 0 0.756 0.244
#> SRR1201676 2 0.5058 0.834 0 0.756 0.244
#> SRR1201675 2 0.5058 0.834 0 0.756 0.244
#> SRR1201674 2 0.5058 0.834 0 0.756 0.244
#> SRR1201678 2 0.5058 0.834 0 0.756 0.244
#> SRR1201682 2 0.5098 0.830 0 0.752 0.248
#> SRR1201683 2 0.5098 0.830 0 0.752 0.248
#> SRR1201680 2 0.5098 0.830 0 0.752 0.248
#> SRR1201681 2 0.5098 0.830 0 0.752 0.248
#> SRR1201679 2 0.0000 0.852 0 1.000 0.000
#> SRR1201686 2 0.4654 0.840 0 0.792 0.208
#> SRR1201687 2 0.4702 0.840 0 0.788 0.212
#> SRR1201688 2 0.4654 0.840 0 0.792 0.208
#> SRR1201689 2 0.4750 0.839 0 0.784 0.216
#> SRR1201685 2 0.0000 0.852 0 1.000 0.000
#> SRR1201692 2 0.5058 0.834 0 0.756 0.244
#> SRR1201691 2 0.5058 0.834 0 0.756 0.244
#> SRR1201690 2 0.0000 0.852 0 1.000 0.000
#> SRR1201696 2 0.5058 0.834 0 0.756 0.244
#> SRR1201695 2 0.5058 0.834 0 0.756 0.244
#> SRR1201694 2 0.5058 0.834 0 0.756 0.244
#> SRR1201693 2 0.5058 0.834 0 0.756 0.244
#> SRR1201697 2 0.5058 0.834 0 0.756 0.244
#> SRR1201698 2 0.5058 0.834 0 0.756 0.244
#> SRR1201700 2 0.0000 0.852 0 1.000 0.000
#> SRR1201708 2 0.5058 0.834 0 0.756 0.244
#> SRR1201707 2 0.5058 0.834 0 0.756 0.244
#> SRR1201706 2 0.5058 0.834 0 0.756 0.244
#> SRR1201702 2 0.5058 0.834 0 0.756 0.244
#> SRR1201705 2 0.5058 0.834 0 0.756 0.244
#> SRR1201701 2 0.5058 0.834 0 0.756 0.244
#> SRR1201704 2 0.5058 0.834 0 0.756 0.244
#> SRR1201703 2 0.5058 0.834 0 0.756 0.244
#> SRR1201716 2 0.5058 0.834 0 0.756 0.244
#> SRR1201715 2 0.5058 0.834 0 0.756 0.244
#> SRR1201717 2 0.5058 0.834 0 0.756 0.244
#> SRR1201712 2 0.5058 0.834 0 0.756 0.244
#> SRR1201709 2 0.0000 0.852 0 1.000 0.000
#> SRR1201711 2 0.5058 0.834 0 0.756 0.244
#> SRR1201714 2 0.5058 0.834 0 0.756 0.244
#> SRR1201713 2 0.5058 0.834 0 0.756 0.244
#> SRR1201710 2 0.5058 0.834 0 0.756 0.244
#> SRR1201719 2 0.5058 0.834 0 0.756 0.244
#> SRR1201718 2 0.0000 0.852 0 1.000 0.000
#> SRR1201721 2 0.5058 0.834 0 0.756 0.244
#> SRR1201720 2 0.0000 0.852 0 1.000 0.000
#> SRR1201723 2 0.5058 0.834 0 0.756 0.244
#> SRR1201722 2 0.0000 0.852 0 1.000 0.000
#> SRR1201725 2 0.4178 0.843 0 0.828 0.172
#> SRR1201724 2 0.0000 0.852 0 1.000 0.000
#> SRR1201726 2 0.0000 0.852 0 1.000 0.000
#> SRR1201727 2 0.5058 0.834 0 0.756 0.244
#> SRR1201731 2 0.4796 0.839 0 0.780 0.220
#> SRR1201730 2 0.0000 0.852 0 1.000 0.000
#> SRR1201734 3 0.0892 0.962 0 0.020 0.980
#> SRR1201733 2 0.0000 0.852 0 1.000 0.000
#> SRR1201736 2 0.0000 0.852 0 1.000 0.000
#> SRR1201737 2 0.5058 0.834 0 0.756 0.244
#> SRR1201739 3 0.6302 -0.298 0 0.480 0.520
#> SRR1201738 2 0.0000 0.852 0 1.000 0.000
#> SRR1201742 2 0.0000 0.852 0 1.000 0.000
#> SRR1201743 2 0.5058 0.834 0 0.756 0.244
#> SRR1201745 3 0.0000 0.986 0 0.000 1.000
#> SRR1201744 2 0.0000 0.852 0 1.000 0.000
#> SRR1201749 2 0.0000 0.852 0 1.000 0.000
#> SRR1201750 2 0.6026 0.650 0 0.624 0.376
#> SRR1201752 2 0.5058 0.834 0 0.756 0.244
#> SRR1201751 2 0.0000 0.852 0 1.000 0.000
#> SRR1201754 2 0.6062 0.634 0 0.616 0.384
#> SRR1201753 2 0.0000 0.852 0 1.000 0.000
#> SRR1201758 2 0.0000 0.852 0 1.000 0.000
#> SRR1201759 2 0.0000 0.852 0 1.000 0.000
#> SRR1201760 2 0.0000 0.852 0 1.000 0.000
#> SRR1201761 2 0.5058 0.834 0 0.756 0.244
#> SRR1201763 2 0.0000 0.852 0 1.000 0.000
#> SRR1201762 2 0.0000 0.852 0 1.000 0.000
#> SRR1201764 2 0.0000 0.852 0 1.000 0.000
#> SRR1201766 2 0.0000 0.852 0 1.000 0.000
#> SRR1201768 3 0.0000 0.986 0 0.000 1.000
#> SRR1201769 3 0.0000 0.986 0 0.000 1.000
#> SRR1201767 3 0.0000 0.986 0 0.000 1.000
#> SRR1201770 3 0.0000 0.986 0 0.000 1.000
#> SRR1201771 3 0.0000 0.986 0 0.000 1.000
#> SRR1201772 3 0.0000 0.986 0 0.000 1.000
#> SRR1201773 3 0.0000 0.986 0 0.000 1.000
#> SRR1201774 3 0.0000 0.986 0 0.000 1.000
#> SRR1201786 3 0.0000 0.986 0 0.000 1.000
#> SRR1201784 3 0.0000 0.986 0 0.000 1.000
#> SRR1201785 3 0.0000 0.986 0 0.000 1.000
#> SRR1201778 2 0.0000 0.852 0 1.000 0.000
#> SRR1201779 3 0.0000 0.986 0 0.000 1.000
#> SRR1201781 3 0.0000 0.986 0 0.000 1.000
#> SRR1201780 3 0.0000 0.986 0 0.000 1.000
#> SRR1201783 3 0.0000 0.986 0 0.000 1.000
#> SRR1201782 3 0.0000 0.986 0 0.000 1.000
#> SRR1201798 3 0.0000 0.986 0 0.000 1.000
#> SRR1201797 3 0.0000 0.986 0 0.000 1.000
#> SRR1201796 3 0.0000 0.986 0 0.000 1.000
#> SRR1201795 3 0.0000 0.986 0 0.000 1.000
#> SRR1201799 3 0.0000 0.986 0 0.000 1.000
#> SRR1201794 3 0.0000 0.986 0 0.000 1.000
#> SRR1201793 3 0.0000 0.986 0 0.000 1.000
#> SRR1201792 3 0.0000 0.986 0 0.000 1.000
#> SRR1201791 2 0.0000 0.852 0 1.000 0.000
#> SRR1201807 3 0.0000 0.986 0 0.000 1.000
#> SRR1201808 3 0.0000 0.986 0 0.000 1.000
#> SRR1201803 3 0.0000 0.986 0 0.000 1.000
#> SRR1201804 3 0.0000 0.986 0 0.000 1.000
#> SRR1201805 3 0.0000 0.986 0 0.000 1.000
#> SRR1201806 3 0.0000 0.986 0 0.000 1.000
#> SRR1201801 3 0.0000 0.986 0 0.000 1.000
#> SRR1201802 3 0.0000 0.986 0 0.000 1.000
#> SRR1201800 2 0.0000 0.852 0 1.000 0.000
#> SRR1201814 3 0.0000 0.986 0 0.000 1.000
#> SRR1201816 3 0.0000 0.986 0 0.000 1.000
#> SRR1201815 3 0.0000 0.986 0 0.000 1.000
#> SRR1201819 3 0.0000 0.986 0 0.000 1.000
#> SRR1201820 3 0.0000 0.986 0 0.000 1.000
#> SRR1201813 2 0.0000 0.852 0 1.000 0.000
#> SRR1201817 3 0.0000 0.986 0 0.000 1.000
#> SRR1201818 3 0.0000 0.986 0 0.000 1.000
#> SRR1201825 2 0.0000 0.852 0 1.000 0.000
#> SRR1201827 2 0.0000 0.852 0 1.000 0.000
#> SRR1201828 2 0.0000 0.852 0 1.000 0.000
#> SRR1201826 2 0.0000 0.852 0 1.000 0.000
#> SRR1201829 2 0.0000 0.852 0 1.000 0.000
#> SRR1201830 2 0.0000 0.852 0 1.000 0.000
#> SRR1201831 2 0.0000 0.852 0 1.000 0.000
#> SRR1201832 2 0.0000 0.852 0 1.000 0.000
#> SRR1201833 2 0.0000 0.852 0 1.000 0.000
#> SRR1201865 2 0.4974 0.836 0 0.764 0.236
#> SRR1201866 2 0.4974 0.836 0 0.764 0.236
#> SRR1201867 2 0.4974 0.836 0 0.764 0.236
#> SRR1201861 2 0.4974 0.836 0 0.764 0.236
#> SRR1201862 2 0.4974 0.836 0 0.764 0.236
#> SRR1201863 2 0.4974 0.836 0 0.764 0.236
#> SRR1201859 2 0.0000 0.852 0 1.000 0.000
#> SRR1201864 2 0.4974 0.836 0 0.764 0.236
#> SRR1201860 2 0.4974 0.836 0 0.764 0.236
#> SRR1201873 2 0.4931 0.837 0 0.768 0.232
#> SRR1201871 2 0.0000 0.852 0 1.000 0.000
#> SRR1201872 2 0.4974 0.836 0 0.764 0.236
#> SRR1201980 2 0.5058 0.834 0 0.756 0.244
#> SRR1201979 2 0.0000 0.852 0 1.000 0.000
#> SRR1201982 2 0.5058 0.834 0 0.756 0.244
#> SRR1201981 2 0.0000 0.852 0 1.000 0.000
#> SRR1201998 2 0.5058 0.834 0 0.756 0.244
#> SRR1201996 2 0.0000 0.852 0 1.000 0.000
#> SRR1201997 2 0.5058 0.834 0 0.756 0.244
#> SRR1202005 2 0.2356 0.848 0 0.928 0.072
#> SRR1202006 2 0.5098 0.830 0 0.752 0.248
#> SRR1202088 2 0.5058 0.834 0 0.756 0.244
#> SRR1202087 2 0.0000 0.852 0 1.000 0.000
#> SRR1202093 2 0.5138 0.827 0 0.748 0.252
#> SRR1202092 2 0.0000 0.852 0 1.000 0.000
#> SRR1202288 2 0.0000 0.852 0 1.000 0.000
#> SRR1202289 3 0.0000 0.986 0 0.000 1.000
#> SRR1202299 3 0.0000 0.986 0 0.000 1.000
#> SRR1202298 2 0.0000 0.852 0 1.000 0.000
#> SRR1202303 2 0.0000 0.852 0 1.000 0.000
#> SRR1202372 3 0.0000 0.986 0 0.000 1.000
#> SRR1202371 2 0.0000 0.852 0 1.000 0.000
#> SRR1202563 2 0.0000 0.852 0 1.000 0.000
#> SRR1202565 2 0.4931 0.837 0 0.768 0.232
#> SRR1202564 2 0.4796 0.839 0 0.780 0.220
#> SRR1202649 2 0.0000 0.852 0 1.000 0.000
#> SRR1202650 2 0.0000 0.852 0 1.000 0.000
#> SRR1202651 2 0.5760 0.730 0 0.672 0.328
#> SRR1202843 1 0.0000 1.000 1 0.000 0.000
#> SRR1202844 1 0.0000 1.000 1 0.000 0.000
#> SRR1202845 2 0.0000 0.852 0 1.000 0.000
#> SRR1202847 2 0.0000 0.852 0 1.000 0.000
#> SRR1202846 2 0.0000 0.852 0 1.000 0.000
#> SRR1202945 1 0.0000 1.000 1 0.000 0.000
#> SRR1202949 1 0.0000 1.000 1 0.000 0.000
#> SRR1202977 1 0.0000 1.000 1 0.000 0.000
#> SRR1202978 1 0.0000 1.000 1 0.000 0.000
#> SRR1202979 1 0.0000 1.000 1 0.000 0.000
#> SRR1202990 1 0.0000 1.000 1 0.000 0.000
#> SRR1202999 1 0.0000 1.000 1 0.000 0.000
#> SRR1203005 1 0.0000 1.000 1 0.000 0.000
#> SRR1203006 1 0.0000 1.000 1 0.000 0.000
#> SRR1203007 1 0.0000 1.000 1 0.000 0.000
#> SRR1203009 1 0.0000 1.000 1 0.000 0.000
#> SRR1203008 1 0.0000 1.000 1 0.000 0.000
#> SRR1203010 1 0.0000 1.000 1 0.000 0.000
#> SRR1203011 1 0.0000 1.000 1 0.000 0.000
#> SRR1203025 1 0.0000 1.000 1 0.000 0.000
#> SRR1203026 1 0.0000 1.000 1 0.000 0.000
#> SRR1203027 1 0.0000 1.000 1 0.000 0.000
#> SRR1203061 1 0.0000 1.000 1 0.000 0.000
#> SRR1203089 1 0.0000 1.000 1 0.000 0.000
#> SRR1203125 1 0.0000 1.000 1 0.000 0.000
#> SRR1203128 1 0.0000 1.000 1 0.000 0.000
#> SRR1203129 1 0.0000 1.000 1 0.000 0.000
#> SRR1203130 1 0.0000 1.000 1 0.000 0.000
#> SRR1203132 2 0.5058 0.834 0 0.756 0.244
#> SRR1203131 2 0.0000 0.852 0 1.000 0.000
#> SRR1203133 1 0.0000 1.000 1 0.000 0.000
#> SRR1203138 1 0.0000 1.000 1 0.000 0.000
#> SRR1203760 1 0.0000 1.000 1 0.000 0.000
#> SRR1203761 1 0.0000 1.000 1 0.000 0.000
#> SRR1203770 1 0.0000 1.000 1 0.000 0.000
#> SRR1203771 1 0.0000 1.000 1 0.000 0.000
#> SRR1203772 1 0.0000 1.000 1 0.000 0.000
#> SRR1203773 1 0.0000 1.000 1 0.000 0.000
#> SRR1203774 1 0.0000 1.000 1 0.000 0.000
#> SRR1203775 1 0.0000 1.000 1 0.000 0.000
#> SRR1203800 1 0.0000 1.000 1 0.000 0.000
#> SRR1203801 1 0.0000 1.000 1 0.000 0.000
#> SRR1203802 1 0.0000 1.000 1 0.000 0.000
#> SRR1203803 1 0.0000 1.000 1 0.000 0.000
#> SRR1203804 1 0.0000 1.000 1 0.000 0.000
#> SRR1203805 1 0.0000 1.000 1 0.000 0.000
#> SRR1203806 1 0.0000 1.000 1 0.000 0.000
#> SRR1203807 1 0.0000 1.000 1 0.000 0.000
#> SRR1203808 1 0.0000 1.000 1 0.000 0.000
#> SRR1203811 1 0.0000 1.000 1 0.000 0.000
#> SRR1203812 1 0.0000 1.000 1 0.000 0.000
#> SRR1203813 1 0.0000 1.000 1 0.000 0.000
#> SRR1203814 1 0.0000 1.000 1 0.000 0.000
#> SRR1203815 1 0.0000 1.000 1 0.000 0.000
#> SRR1203816 1 0.0000 1.000 1 0.000 0.000
#> SRR1203817 1 0.0000 1.000 1 0.000 0.000
#> SRR1203818 1 0.0000 1.000 1 0.000 0.000
#> SRR1203819 1 0.0000 1.000 1 0.000 0.000
#> SRR1203822 1 0.0000 1.000 1 0.000 0.000
#> SRR1203823 1 0.0000 1.000 1 0.000 0.000
#> SRR1203824 1 0.0000 1.000 1 0.000 0.000
#> SRR1203825 1 0.0000 1.000 1 0.000 0.000
#> SRR1203826 1 0.0000 1.000 1 0.000 0.000
#> SRR1203827 2 0.0000 0.852 0 1.000 0.000
#> SRR1203828 1 0.0000 1.000 1 0.000 0.000
#> SRR1203829 1 0.0000 1.000 1 0.000 0.000
#> SRR1203830 1 0.0000 1.000 1 0.000 0.000
#> SRR1203831 1 0.0000 1.000 1 0.000 0.000
#> SRR1203832 1 0.0000 1.000 1 0.000 0.000
#> SRR1203833 1 0.0000 1.000 1 0.000 0.000
#> SRR1203834 1 0.0000 1.000 1 0.000 0.000
#> SRR1203835 1 0.0000 1.000 1 0.000 0.000
#> SRR1203836 1 0.0000 1.000 1 0.000 0.000
#> SRR1203837 1 0.0000 1.000 1 0.000 0.000
#> SRR1203838 1 0.0000 1.000 1 0.000 0.000
#> SRR1203839 1 0.0000 1.000 1 0.000 0.000
#> SRR1203842 2 0.0000 0.852 0 1.000 0.000
#> SRR1203843 1 0.0000 1.000 1 0.000 0.000
#> SRR1203845 2 0.5058 0.834 0 0.756 0.244
#> SRR1203844 2 0.0000 0.852 0 1.000 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201590 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201593 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201592 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201617 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201616 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201619 3 0.0657 0.978 0 0.012 0.984 0.004
#> SRR1201618 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201620 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201621 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201623 3 0.0336 0.981 0 0.008 0.992 0.000
#> SRR1201622 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201624 2 0.0000 0.873 0 1.000 0.000 0.000
#> SRR1201625 2 0.0921 0.895 0 0.972 0.028 0.000
#> SRR1201626 2 0.0000 0.873 0 1.000 0.000 0.000
#> SRR1201627 2 0.0921 0.895 0 0.972 0.028 0.000
#> SRR1201628 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201629 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201630 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201631 3 0.1489 0.947 0 0.044 0.952 0.004
#> SRR1201641 3 0.0376 0.981 0 0.004 0.992 0.004
#> SRR1201640 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201643 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201644 3 0.0469 0.979 0 0.012 0.988 0.000
#> SRR1201661 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201662 3 0.2593 0.873 0 0.104 0.892 0.004
#> SRR1201663 2 0.1792 0.924 0 0.932 0.068 0.000
#> SRR1201664 2 0.3610 0.834 0 0.800 0.200 0.000
#> SRR1201665 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201666 3 0.0804 0.976 0 0.012 0.980 0.008
#> SRR1201667 3 0.0804 0.976 0 0.012 0.980 0.008
#> SRR1201668 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201670 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201669 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201673 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201672 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201671 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201677 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201676 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201675 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201674 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201678 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201682 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201683 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201680 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201681 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201679 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201686 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201687 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201688 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201689 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201685 2 0.0000 0.873 0 1.000 0.000 0.000
#> SRR1201692 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201691 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201690 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201696 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201695 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201694 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201693 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201697 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201698 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201700 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201708 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201707 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201706 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201702 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201705 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201701 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201704 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201703 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201716 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201715 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201717 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201712 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201709 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201711 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201714 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201713 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201710 3 0.0000 0.981 0 0.000 1.000 0.000
#> SRR1201719 3 0.0469 0.979 0 0.012 0.988 0.000
#> SRR1201718 2 0.3400 0.856 0 0.820 0.180 0.000
#> SRR1201721 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201720 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201723 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1201722 2 0.1867 0.927 0 0.928 0.072 0.000
#> SRR1201725 3 0.3569 0.723 0 0.196 0.804 0.000
#> SRR1201724 2 0.2814 0.906 0 0.868 0.132 0.000
#> SRR1201726 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201727 3 0.0336 0.981 0 0.008 0.992 0.000
#> SRR1201731 3 0.0336 0.981 0 0.008 0.992 0.000
#> SRR1201730 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201734 4 0.0188 0.995 0 0.004 0.000 0.996
#> SRR1201733 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201736 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201737 3 0.0657 0.978 0 0.012 0.984 0.004
#> SRR1201739 3 0.1970 0.929 0 0.008 0.932 0.060
#> SRR1201738 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201742 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201743 3 0.0376 0.981 0 0.004 0.992 0.004
#> SRR1201745 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201744 2 0.0921 0.897 0 0.972 0.028 0.000
#> SRR1201749 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201750 3 0.2402 0.902 0 0.012 0.912 0.076
#> SRR1201752 3 0.0336 0.981 0 0.008 0.992 0.000
#> SRR1201751 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201754 3 0.0657 0.978 0 0.012 0.984 0.004
#> SRR1201753 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201758 2 0.0000 0.873 0 1.000 0.000 0.000
#> SRR1201759 2 0.0336 0.871 0 0.992 0.008 0.000
#> SRR1201760 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201761 3 0.0336 0.981 0 0.008 0.992 0.000
#> SRR1201763 2 0.0921 0.895 0 0.972 0.028 0.000
#> SRR1201762 2 0.0000 0.873 0 1.000 0.000 0.000
#> SRR1201764 2 0.0000 0.873 0 1.000 0.000 0.000
#> SRR1201766 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201768 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201769 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201767 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201770 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201771 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201772 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201773 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201774 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201786 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201784 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201785 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201778 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201779 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201781 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201780 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201783 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201782 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201798 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201797 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201796 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201795 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201799 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201794 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201793 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201792 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201791 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201807 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201808 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201803 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201804 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201805 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201806 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201801 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201802 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201800 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201814 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201816 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201815 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201819 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201820 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201813 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201817 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201818 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1201825 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201827 2 0.4967 0.371 0 0.548 0.452 0.000
#> SRR1201828 2 0.4967 0.371 0 0.548 0.452 0.000
#> SRR1201826 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201829 2 0.4967 0.371 0 0.548 0.452 0.000
#> SRR1201830 2 0.4967 0.371 0 0.548 0.452 0.000
#> SRR1201831 2 0.4967 0.371 0 0.548 0.452 0.000
#> SRR1201832 2 0.4967 0.371 0 0.548 0.452 0.000
#> SRR1201833 2 0.4967 0.371 0 0.548 0.452 0.000
#> SRR1201865 3 0.0592 0.976 0 0.016 0.984 0.000
#> SRR1201866 3 0.0592 0.976 0 0.016 0.984 0.000
#> SRR1201867 3 0.0592 0.976 0 0.016 0.984 0.000
#> SRR1201861 3 0.0592 0.976 0 0.016 0.984 0.000
#> SRR1201862 3 0.0592 0.976 0 0.016 0.984 0.000
#> SRR1201863 3 0.0592 0.976 0 0.016 0.984 0.000
#> SRR1201859 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201864 3 0.0592 0.976 0 0.016 0.984 0.000
#> SRR1201860 3 0.0592 0.976 0 0.016 0.984 0.000
#> SRR1201873 3 0.0336 0.981 0 0.008 0.992 0.000
#> SRR1201871 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201872 3 0.0336 0.981 0 0.008 0.992 0.000
#> SRR1201980 3 0.0336 0.981 0 0.008 0.992 0.000
#> SRR1201979 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201982 3 0.0336 0.981 0 0.008 0.992 0.000
#> SRR1201981 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201998 3 0.0469 0.979 0 0.012 0.988 0.000
#> SRR1201996 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1201997 3 0.0469 0.979 0 0.012 0.988 0.000
#> SRR1202005 3 0.5560 0.214 0 0.392 0.584 0.024
#> SRR1202006 3 0.3081 0.895 0 0.048 0.888 0.064
#> SRR1202088 3 0.0336 0.981 0 0.008 0.992 0.000
#> SRR1202087 2 0.2281 0.936 0 0.904 0.096 0.000
#> SRR1202093 3 0.0376 0.981 0 0.004 0.992 0.004
#> SRR1202092 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1202288 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1202289 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1202299 4 0.0000 0.999 0 0.000 0.000 1.000
#> SRR1202298 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1202303 2 0.0921 0.895 0 0.972 0.028 0.000
#> SRR1202372 4 0.0817 0.974 0 0.000 0.024 0.976
#> SRR1202371 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1202563 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1202565 3 0.1109 0.962 0 0.028 0.968 0.004
#> SRR1202564 3 0.1305 0.954 0 0.036 0.960 0.004
#> SRR1202649 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1202650 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1202651 3 0.0672 0.978 0 0.008 0.984 0.008
#> SRR1202843 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1202844 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1202845 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1202847 2 0.2751 0.893 0 0.904 0.040 0.056
#> SRR1202846 2 0.2751 0.893 0 0.904 0.040 0.056
#> SRR1202945 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1202949 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1202977 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1202978 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1202979 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1202990 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1202999 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203005 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203006 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203007 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203009 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203008 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203010 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203011 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203025 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203026 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203027 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203061 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203089 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203125 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203128 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203129 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203130 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203132 3 0.0188 0.982 0 0.004 0.996 0.000
#> SRR1203131 2 0.2216 0.939 0 0.908 0.092 0.000
#> SRR1203133 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203138 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203760 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203761 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203770 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203771 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203772 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203773 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203774 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203775 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203800 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203801 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203802 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203803 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203804 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203805 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203806 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203807 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203808 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203811 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203812 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203813 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203814 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203815 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203816 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203817 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203818 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203819 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203822 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203823 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203824 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203825 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203826 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203827 2 0.0000 0.873 0 1.000 0.000 0.000
#> SRR1203828 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203829 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203830 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203831 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203832 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203833 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203834 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203835 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203836 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203837 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203838 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203839 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203842 2 0.0000 0.873 0 1.000 0.000 0.000
#> SRR1203843 1 0.0000 1.000 1 0.000 0.000 0.000
#> SRR1203845 2 0.5417 0.760 0 0.732 0.180 0.088
#> SRR1203844 2 0.2216 0.939 0 0.908 0.092 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.2390 0.92960 0 0.896 0.020 0.084 0.000
#> SRR1201590 5 0.0000 0.79760 0 0.000 0.000 0.000 1.000
#> SRR1201593 2 0.2136 0.93234 0 0.904 0.008 0.088 0.000
#> SRR1201592 5 0.0000 0.79760 0 0.000 0.000 0.000 1.000
#> SRR1201617 2 0.2136 0.93234 0 0.904 0.008 0.088 0.000
#> SRR1201616 5 0.0000 0.79760 0 0.000 0.000 0.000 1.000
#> SRR1201619 3 0.5892 0.21031 0 0.000 0.520 0.372 0.108
#> SRR1201618 5 0.1410 0.80679 0 0.000 0.060 0.000 0.940
#> SRR1201620 5 0.0000 0.79760 0 0.000 0.000 0.000 1.000
#> SRR1201621 2 0.0912 0.96392 0 0.972 0.012 0.016 0.000
#> SRR1201623 3 0.4431 0.36316 0 0.000 0.732 0.052 0.216
#> SRR1201622 5 0.1478 0.80580 0 0.000 0.064 0.000 0.936
#> SRR1201624 5 0.4294 0.44003 0 0.000 0.000 0.468 0.532
#> SRR1201625 5 0.4291 0.44385 0 0.000 0.000 0.464 0.536
#> SRR1201626 5 0.4294 0.44003 0 0.000 0.000 0.468 0.532
#> SRR1201627 5 0.4291 0.44385 0 0.000 0.000 0.464 0.536
#> SRR1201628 5 0.1478 0.80580 0 0.000 0.064 0.000 0.936
#> SRR1201629 3 0.3106 0.46584 0 0.000 0.840 0.020 0.140
#> SRR1201630 5 0.0794 0.79850 0 0.000 0.028 0.000 0.972
#> SRR1201631 3 0.5240 -0.01441 0 0.000 0.584 0.056 0.360
#> SRR1201641 3 0.5681 0.29459 0 0.000 0.608 0.268 0.124
#> SRR1201640 5 0.1410 0.80679 0 0.000 0.060 0.000 0.940
#> SRR1201643 5 0.1478 0.80580 0 0.000 0.064 0.000 0.936
#> SRR1201644 3 0.4420 0.27118 0 0.000 0.692 0.028 0.280
#> SRR1201661 5 0.0794 0.79850 0 0.000 0.028 0.000 0.972
#> SRR1201662 3 0.6553 0.01388 0 0.004 0.472 0.340 0.184
#> SRR1201663 5 0.4620 0.57878 0 0.000 0.028 0.320 0.652
#> SRR1201664 5 0.5182 -0.10348 0 0.000 0.412 0.044 0.544
#> SRR1201665 5 0.0794 0.80096 0 0.000 0.028 0.000 0.972
#> SRR1201666 3 0.5394 0.25337 0 0.004 0.560 0.384 0.052
#> SRR1201667 3 0.5394 0.25337 0 0.004 0.560 0.384 0.052
#> SRR1201668 5 0.3493 0.74948 0 0.000 0.060 0.108 0.832
#> SRR1201670 3 0.3769 0.42383 0 0.000 0.788 0.032 0.180
#> SRR1201669 3 0.3769 0.42383 0 0.000 0.788 0.032 0.180
#> SRR1201673 3 0.4682 0.27721 0 0.000 0.564 0.420 0.016
#> SRR1201672 3 0.4658 0.29115 0 0.000 0.576 0.408 0.016
#> SRR1201671 5 0.1410 0.80679 0 0.000 0.060 0.000 0.940
#> SRR1201677 3 0.4674 0.28218 0 0.000 0.568 0.416 0.016
#> SRR1201676 3 0.4682 0.27721 0 0.000 0.564 0.420 0.016
#> SRR1201675 3 0.4682 0.27721 0 0.000 0.564 0.420 0.016
#> SRR1201674 3 0.4666 0.28678 0 0.000 0.572 0.412 0.016
#> SRR1201678 3 0.4682 0.27721 0 0.000 0.564 0.420 0.016
#> SRR1201682 3 0.5148 0.19863 0 0.000 0.528 0.432 0.040
#> SRR1201683 3 0.5148 0.19863 0 0.000 0.528 0.432 0.040
#> SRR1201680 3 0.5148 0.19863 0 0.000 0.528 0.432 0.040
#> SRR1201681 3 0.5148 0.19863 0 0.000 0.528 0.432 0.040
#> SRR1201679 5 0.1341 0.80690 0 0.000 0.056 0.000 0.944
#> SRR1201686 3 0.4736 0.01246 0 0.000 0.576 0.020 0.404
#> SRR1201687 3 0.4736 0.01246 0 0.000 0.576 0.020 0.404
#> SRR1201688 3 0.4736 0.01246 0 0.000 0.576 0.020 0.404
#> SRR1201689 3 0.4736 0.01246 0 0.000 0.576 0.020 0.404
#> SRR1201685 5 0.4192 0.50779 0 0.000 0.000 0.404 0.596
#> SRR1201692 3 0.2473 0.50254 0 0.000 0.896 0.072 0.032
#> SRR1201691 3 0.2473 0.50254 0 0.000 0.896 0.072 0.032
#> SRR1201690 5 0.1478 0.80580 0 0.000 0.064 0.000 0.936
#> SRR1201696 3 0.2473 0.50254 0 0.000 0.896 0.072 0.032
#> SRR1201695 3 0.2473 0.50254 0 0.000 0.896 0.072 0.032
#> SRR1201694 3 0.2473 0.50254 0 0.000 0.896 0.072 0.032
#> SRR1201693 3 0.2473 0.50254 0 0.000 0.896 0.072 0.032
#> SRR1201697 3 0.2473 0.50254 0 0.000 0.896 0.072 0.032
#> SRR1201698 3 0.2473 0.50254 0 0.000 0.896 0.072 0.032
#> SRR1201700 5 0.1478 0.80580 0 0.000 0.064 0.000 0.936
#> SRR1201708 3 0.2505 0.49664 0 0.000 0.888 0.092 0.020
#> SRR1201707 3 0.2505 0.49664 0 0.000 0.888 0.092 0.020
#> SRR1201706 3 0.2505 0.49664 0 0.000 0.888 0.092 0.020
#> SRR1201702 3 0.2505 0.49664 0 0.000 0.888 0.092 0.020
#> SRR1201705 3 0.2505 0.49664 0 0.000 0.888 0.092 0.020
#> SRR1201701 3 0.2505 0.49664 0 0.000 0.888 0.092 0.020
#> SRR1201704 3 0.2505 0.49664 0 0.000 0.888 0.092 0.020
#> SRR1201703 3 0.2505 0.49664 0 0.000 0.888 0.092 0.020
#> SRR1201716 3 0.2793 0.49510 0 0.000 0.876 0.088 0.036
#> SRR1201715 3 0.2793 0.49510 0 0.000 0.876 0.088 0.036
#> SRR1201717 3 0.2793 0.49510 0 0.000 0.876 0.088 0.036
#> SRR1201712 3 0.2793 0.49510 0 0.000 0.876 0.088 0.036
#> SRR1201709 5 0.1478 0.80580 0 0.000 0.064 0.000 0.936
#> SRR1201711 3 0.2793 0.49510 0 0.000 0.876 0.088 0.036
#> SRR1201714 3 0.2793 0.49510 0 0.000 0.876 0.088 0.036
#> SRR1201713 3 0.2793 0.49510 0 0.000 0.876 0.088 0.036
#> SRR1201710 3 0.2793 0.49510 0 0.000 0.876 0.088 0.036
#> SRR1201719 3 0.5618 0.21585 0 0.000 0.564 0.348 0.088
#> SRR1201718 5 0.3438 0.62764 0 0.000 0.172 0.020 0.808
#> SRR1201721 3 0.2920 0.47476 0 0.000 0.852 0.016 0.132
#> SRR1201720 5 0.1478 0.80580 0 0.000 0.064 0.000 0.936
#> SRR1201723 3 0.4538 -0.06763 0 0.000 0.540 0.008 0.452
#> SRR1201722 5 0.1753 0.80484 0 0.000 0.032 0.032 0.936
#> SRR1201725 3 0.5903 0.17015 0 0.000 0.548 0.332 0.120
#> SRR1201724 5 0.3194 0.67910 0 0.000 0.148 0.020 0.832
#> SRR1201726 5 0.1410 0.80679 0 0.000 0.060 0.000 0.940
#> SRR1201727 3 0.3409 0.45220 0 0.000 0.816 0.024 0.160
#> SRR1201731 3 0.4700 0.39428 0 0.000 0.728 0.184 0.088
#> SRR1201730 5 0.1544 0.80278 0 0.000 0.068 0.000 0.932
#> SRR1201734 2 0.2275 0.93519 0 0.912 0.012 0.064 0.012
#> SRR1201733 5 0.0000 0.79760 0 0.000 0.000 0.000 1.000
#> SRR1201736 5 0.1410 0.80679 0 0.000 0.060 0.000 0.940
#> SRR1201737 3 0.5636 0.25096 0 0.000 0.544 0.372 0.084
#> SRR1201739 3 0.7165 0.15592 0 0.124 0.480 0.332 0.064
#> SRR1201738 5 0.0000 0.79760 0 0.000 0.000 0.000 1.000
#> SRR1201742 5 0.1410 0.80679 0 0.000 0.060 0.000 0.940
#> SRR1201743 3 0.5405 0.25708 0 0.000 0.556 0.380 0.064
#> SRR1201745 2 0.1121 0.93517 0 0.956 0.000 0.000 0.044
#> SRR1201744 5 0.3508 0.61599 0 0.000 0.000 0.252 0.748
#> SRR1201749 5 0.0162 0.79840 0 0.000 0.004 0.000 0.996
#> SRR1201750 3 0.7495 -0.00861 0 0.076 0.440 0.336 0.148
#> SRR1201752 3 0.5413 0.37026 0 0.000 0.664 0.164 0.172
#> SRR1201751 5 0.1410 0.80679 0 0.000 0.060 0.000 0.940
#> SRR1201754 3 0.5865 0.20346 0 0.016 0.508 0.416 0.060
#> SRR1201753 5 0.0000 0.79760 0 0.000 0.000 0.000 1.000
#> SRR1201758 5 0.4294 0.44003 0 0.000 0.000 0.468 0.532
#> SRR1201759 5 0.4434 0.44198 0 0.000 0.004 0.460 0.536
#> SRR1201760 5 0.1478 0.80580 0 0.000 0.064 0.000 0.936
#> SRR1201761 3 0.3734 0.47643 0 0.000 0.812 0.060 0.128
#> SRR1201763 5 0.4291 0.44385 0 0.000 0.000 0.464 0.536
#> SRR1201762 5 0.4294 0.44003 0 0.000 0.000 0.468 0.532
#> SRR1201764 5 0.4291 0.44397 0 0.000 0.000 0.464 0.536
#> SRR1201766 5 0.0162 0.79682 0 0.000 0.000 0.004 0.996
#> SRR1201768 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201769 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201767 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201770 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201771 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201772 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201773 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201774 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201786 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201784 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201785 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201778 5 0.0000 0.79760 0 0.000 0.000 0.000 1.000
#> SRR1201779 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201781 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201780 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201783 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201782 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201798 2 0.2136 0.93234 0 0.904 0.008 0.088 0.000
#> SRR1201797 2 0.2136 0.93234 0 0.904 0.008 0.088 0.000
#> SRR1201796 2 0.2136 0.93234 0 0.904 0.008 0.088 0.000
#> SRR1201795 2 0.2136 0.93234 0 0.904 0.008 0.088 0.000
#> SRR1201799 2 0.2136 0.93234 0 0.904 0.008 0.088 0.000
#> SRR1201794 2 0.2136 0.93234 0 0.904 0.008 0.088 0.000
#> SRR1201793 2 0.2136 0.93234 0 0.904 0.008 0.088 0.000
#> SRR1201792 2 0.2136 0.93234 0 0.904 0.008 0.088 0.000
#> SRR1201791 5 0.0000 0.79760 0 0.000 0.000 0.000 1.000
#> SRR1201807 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201808 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201803 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201804 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201805 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201806 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201801 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201802 2 0.0000 0.96885 0 1.000 0.000 0.000 0.000
#> SRR1201800 5 0.0000 0.79760 0 0.000 0.000 0.000 1.000
#> SRR1201814 2 0.0693 0.96490 0 0.980 0.012 0.008 0.000
#> SRR1201816 2 0.0693 0.96490 0 0.980 0.012 0.008 0.000
#> SRR1201815 2 0.0693 0.96490 0 0.980 0.012 0.008 0.000
#> SRR1201819 2 0.0693 0.96490 0 0.980 0.012 0.008 0.000
#> SRR1201820 2 0.0693 0.96490 0 0.980 0.012 0.008 0.000
#> SRR1201813 5 0.0000 0.79760 0 0.000 0.000 0.000 1.000
#> SRR1201817 2 0.0693 0.96490 0 0.980 0.012 0.008 0.000
#> SRR1201818 2 0.0693 0.96490 0 0.980 0.012 0.008 0.000
#> SRR1201825 5 0.1478 0.80580 0 0.000 0.064 0.000 0.936
#> SRR1201827 4 0.6684 1.00000 0 0.000 0.352 0.408 0.240
#> SRR1201828 4 0.6684 1.00000 0 0.000 0.352 0.408 0.240
#> SRR1201826 5 0.2012 0.80241 0 0.000 0.060 0.020 0.920
#> SRR1201829 4 0.6684 1.00000 0 0.000 0.352 0.408 0.240
#> SRR1201830 4 0.6684 1.00000 0 0.000 0.352 0.408 0.240
#> SRR1201831 4 0.6684 1.00000 0 0.000 0.352 0.408 0.240
#> SRR1201832 4 0.6684 1.00000 0 0.000 0.352 0.408 0.240
#> SRR1201833 4 0.6684 1.00000 0 0.000 0.352 0.408 0.240
#> SRR1201865 3 0.4497 0.39046 0 0.000 0.732 0.060 0.208
#> SRR1201866 3 0.4558 0.38154 0 0.000 0.724 0.060 0.216
#> SRR1201867 3 0.4497 0.39046 0 0.000 0.732 0.060 0.208
#> SRR1201861 3 0.4497 0.39046 0 0.000 0.732 0.060 0.208
#> SRR1201862 3 0.4497 0.39046 0 0.000 0.732 0.060 0.208
#> SRR1201863 3 0.4497 0.39046 0 0.000 0.732 0.060 0.208
#> SRR1201859 5 0.3058 0.76152 0 0.000 0.044 0.096 0.860
#> SRR1201864 3 0.4558 0.38165 0 0.000 0.724 0.060 0.216
#> SRR1201860 3 0.4558 0.38165 0 0.000 0.724 0.060 0.216
#> SRR1201873 3 0.3663 0.38213 0 0.000 0.776 0.016 0.208
#> SRR1201871 5 0.1478 0.80580 0 0.000 0.064 0.000 0.936
#> SRR1201872 3 0.3530 0.38991 0 0.000 0.784 0.012 0.204
#> SRR1201980 3 0.4317 0.46054 0 0.000 0.772 0.112 0.116
#> SRR1201979 5 0.1478 0.80580 0 0.000 0.064 0.000 0.936
#> SRR1201982 3 0.3906 0.46079 0 0.000 0.800 0.132 0.068
#> SRR1201981 5 0.1478 0.80580 0 0.000 0.064 0.000 0.936
#> SRR1201998 3 0.5644 0.22664 0 0.000 0.576 0.328 0.096
#> SRR1201996 5 0.1121 0.79898 0 0.000 0.044 0.000 0.956
#> SRR1201997 3 0.5618 0.21063 0 0.000 0.564 0.348 0.088
#> SRR1202005 5 0.5882 -0.23468 0 0.012 0.332 0.084 0.572
#> SRR1202006 3 0.7933 -0.26126 0 0.096 0.368 0.344 0.192
#> SRR1202088 3 0.5328 0.31280 0 0.000 0.584 0.352 0.064
#> SRR1202087 5 0.1410 0.80679 0 0.000 0.060 0.000 0.940
#> SRR1202093 3 0.5330 0.24520 0 0.000 0.548 0.396 0.056
#> SRR1202092 5 0.1410 0.80679 0 0.000 0.060 0.000 0.940
#> SRR1202288 5 0.0000 0.79760 0 0.000 0.000 0.000 1.000
#> SRR1202289 2 0.2069 0.93764 0 0.912 0.012 0.076 0.000
#> SRR1202299 2 0.2241 0.93634 0 0.908 0.008 0.076 0.008
#> SRR1202298 5 0.0000 0.79760 0 0.000 0.000 0.000 1.000
#> SRR1202303 5 0.4291 0.44385 0 0.000 0.000 0.464 0.536
#> SRR1202372 2 0.1651 0.95237 0 0.944 0.012 0.036 0.008
#> SRR1202371 5 0.0000 0.79760 0 0.000 0.000 0.000 1.000
#> SRR1202563 5 0.1478 0.80580 0 0.000 0.064 0.000 0.936
#> SRR1202565 3 0.5576 0.24457 0 0.000 0.536 0.388 0.076
#> SRR1202564 3 0.5815 0.22326 0 0.000 0.540 0.356 0.104
#> SRR1202649 5 0.1478 0.80580 0 0.000 0.064 0.000 0.936
#> SRR1202650 5 0.1410 0.80679 0 0.000 0.060 0.000 0.940
#> SRR1202651 3 0.5576 0.18879 0 0.004 0.512 0.424 0.060
#> SRR1202843 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1202845 5 0.3395 0.62355 0 0.000 0.000 0.236 0.764
#> SRR1202847 5 0.6286 0.34948 0 0.068 0.132 0.148 0.652
#> SRR1202846 5 0.6286 0.34948 0 0.068 0.132 0.148 0.652
#> SRR1202945 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.2233 0.50043 0 0.000 0.904 0.016 0.080
#> SRR1203131 5 0.1478 0.80580 0 0.000 0.064 0.000 0.936
#> SRR1203133 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203827 5 0.4294 0.44003 0 0.000 0.000 0.468 0.532
#> SRR1203828 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203842 5 0.4294 0.44003 0 0.000 0.000 0.468 0.532
#> SRR1203843 1 0.0000 1.00000 1 0.000 0.000 0.000 0.000
#> SRR1203845 5 0.8197 -0.61597 0 0.120 0.328 0.220 0.332
#> SRR1203844 5 0.0000 0.79760 0 0.000 0.000 0.000 1.000
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 2 0.0713 0.9751 0 0.972 0.000 0.000 0.000 0.028
#> SRR1201590 5 0.2219 0.8275 0 0.000 0.000 0.136 0.864 0.000
#> SRR1201593 2 0.0790 0.9726 0 0.968 0.000 0.000 0.000 0.032
#> SRR1201592 5 0.2362 0.8256 0 0.000 0.000 0.136 0.860 0.004
#> SRR1201617 2 0.0790 0.9726 0 0.968 0.000 0.000 0.000 0.032
#> SRR1201616 5 0.2219 0.8275 0 0.000 0.000 0.136 0.864 0.000
#> SRR1201619 6 0.3547 0.4938 0 0.000 0.300 0.000 0.004 0.696
#> SRR1201618 5 0.0820 0.8848 0 0.000 0.000 0.012 0.972 0.016
#> SRR1201620 5 0.2219 0.8275 0 0.000 0.000 0.136 0.864 0.000
#> SRR1201621 2 0.0146 0.9870 0 0.996 0.000 0.000 0.000 0.004
#> SRR1201623 3 0.4952 0.5487 0 0.000 0.632 0.000 0.116 0.252
#> SRR1201622 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1201624 4 0.2871 0.9260 0 0.000 0.000 0.804 0.192 0.004
#> SRR1201625 4 0.2219 0.9310 0 0.000 0.000 0.864 0.136 0.000
#> SRR1201626 4 0.2491 0.9393 0 0.000 0.000 0.836 0.164 0.000
#> SRR1201627 4 0.2219 0.9310 0 0.000 0.000 0.864 0.136 0.000
#> SRR1201628 5 0.0547 0.8850 0 0.000 0.000 0.000 0.980 0.020
#> SRR1201629 3 0.4556 0.6126 0 0.000 0.688 0.000 0.100 0.212
#> SRR1201630 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1201631 6 0.4655 0.5403 0 0.000 0.208 0.000 0.112 0.680
#> SRR1201641 3 0.5033 0.2082 0 0.000 0.476 0.000 0.072 0.452
#> SRR1201640 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1201643 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1201644 3 0.5029 0.5306 0 0.000 0.612 0.000 0.112 0.276
#> SRR1201661 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1201662 6 0.2932 0.6476 0 0.000 0.164 0.000 0.016 0.820
#> SRR1201663 5 0.4371 0.0882 0 0.000 0.000 0.392 0.580 0.028
#> SRR1201664 3 0.6586 0.1823 0 0.000 0.460 0.312 0.176 0.052
#> SRR1201665 5 0.2092 0.8345 0 0.000 0.000 0.124 0.876 0.000
#> SRR1201666 6 0.2504 0.6507 0 0.004 0.136 0.000 0.004 0.856
#> SRR1201667 6 0.2504 0.6507 0 0.004 0.136 0.000 0.004 0.856
#> SRR1201668 5 0.2404 0.7823 0 0.000 0.000 0.112 0.872 0.016
#> SRR1201670 3 0.3650 0.6725 0 0.000 0.792 0.000 0.116 0.092
#> SRR1201669 3 0.3650 0.6725 0 0.000 0.792 0.000 0.116 0.092
#> SRR1201673 3 0.3847 0.2808 0 0.000 0.544 0.000 0.000 0.456
#> SRR1201672 3 0.3847 0.2808 0 0.000 0.544 0.000 0.000 0.456
#> SRR1201671 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1201677 3 0.3843 0.2917 0 0.000 0.548 0.000 0.000 0.452
#> SRR1201676 3 0.3843 0.2917 0 0.000 0.548 0.000 0.000 0.452
#> SRR1201675 3 0.3847 0.2808 0 0.000 0.544 0.000 0.000 0.456
#> SRR1201674 3 0.3847 0.2808 0 0.000 0.544 0.000 0.000 0.456
#> SRR1201678 3 0.3847 0.2808 0 0.000 0.544 0.000 0.000 0.456
#> SRR1201682 6 0.2491 0.6451 0 0.000 0.164 0.000 0.000 0.836
#> SRR1201683 6 0.2416 0.6479 0 0.000 0.156 0.000 0.000 0.844
#> SRR1201680 6 0.2340 0.6492 0 0.000 0.148 0.000 0.000 0.852
#> SRR1201681 6 0.2378 0.6488 0 0.000 0.152 0.000 0.000 0.848
#> SRR1201679 5 0.1863 0.8446 0 0.000 0.000 0.104 0.896 0.000
#> SRR1201686 3 0.4492 0.6415 0 0.000 0.756 0.056 0.128 0.060
#> SRR1201687 3 0.4492 0.6415 0 0.000 0.756 0.056 0.128 0.060
#> SRR1201688 3 0.4492 0.6415 0 0.000 0.756 0.056 0.128 0.060
#> SRR1201689 3 0.4492 0.6415 0 0.000 0.756 0.056 0.128 0.060
#> SRR1201685 5 0.4469 -0.2412 0 0.000 0.000 0.468 0.504 0.028
#> SRR1201692 3 0.1501 0.6925 0 0.000 0.924 0.000 0.000 0.076
#> SRR1201691 3 0.1501 0.6925 0 0.000 0.924 0.000 0.000 0.076
#> SRR1201690 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1201696 3 0.1444 0.6938 0 0.000 0.928 0.000 0.000 0.072
#> SRR1201695 3 0.1444 0.6938 0 0.000 0.928 0.000 0.000 0.072
#> SRR1201694 3 0.1444 0.6938 0 0.000 0.928 0.000 0.000 0.072
#> SRR1201693 3 0.1444 0.6938 0 0.000 0.928 0.000 0.000 0.072
#> SRR1201697 3 0.1501 0.6925 0 0.000 0.924 0.000 0.000 0.076
#> SRR1201698 3 0.1556 0.6928 0 0.000 0.920 0.000 0.000 0.080
#> SRR1201700 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1201708 3 0.0865 0.6777 0 0.000 0.964 0.000 0.000 0.036
#> SRR1201707 3 0.0865 0.6777 0 0.000 0.964 0.000 0.000 0.036
#> SRR1201706 3 0.0865 0.6777 0 0.000 0.964 0.000 0.000 0.036
#> SRR1201702 3 0.0865 0.6777 0 0.000 0.964 0.000 0.000 0.036
#> SRR1201705 3 0.0865 0.6777 0 0.000 0.964 0.000 0.000 0.036
#> SRR1201701 3 0.0865 0.6777 0 0.000 0.964 0.000 0.000 0.036
#> SRR1201704 3 0.0865 0.6777 0 0.000 0.964 0.000 0.000 0.036
#> SRR1201703 3 0.0865 0.6777 0 0.000 0.964 0.000 0.000 0.036
#> SRR1201716 3 0.0146 0.6792 0 0.000 0.996 0.000 0.004 0.000
#> SRR1201715 3 0.0146 0.6792 0 0.000 0.996 0.000 0.004 0.000
#> SRR1201717 3 0.0146 0.6792 0 0.000 0.996 0.000 0.004 0.000
#> SRR1201712 3 0.0146 0.6792 0 0.000 0.996 0.000 0.004 0.000
#> SRR1201709 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1201711 3 0.0146 0.6792 0 0.000 0.996 0.000 0.004 0.000
#> SRR1201714 3 0.0146 0.6792 0 0.000 0.996 0.000 0.004 0.000
#> SRR1201713 3 0.0146 0.6792 0 0.000 0.996 0.000 0.004 0.000
#> SRR1201710 3 0.0291 0.6807 0 0.000 0.992 0.000 0.004 0.004
#> SRR1201719 6 0.3742 0.3982 0 0.000 0.348 0.000 0.004 0.648
#> SRR1201718 5 0.3017 0.6685 0 0.000 0.020 0.000 0.816 0.164
#> SRR1201721 3 0.3644 0.6935 0 0.000 0.792 0.000 0.088 0.120
#> SRR1201720 5 0.0547 0.8850 0 0.000 0.000 0.000 0.980 0.020
#> SRR1201723 3 0.4798 0.6088 0 0.000 0.724 0.080 0.152 0.044
#> SRR1201722 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1201725 6 0.3852 0.3116 0 0.000 0.384 0.000 0.004 0.612
#> SRR1201724 5 0.2346 0.7509 0 0.000 0.008 0.000 0.868 0.124
#> SRR1201726 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1201727 3 0.3740 0.6875 0 0.000 0.784 0.000 0.096 0.120
#> SRR1201731 3 0.4357 0.5017 0 0.000 0.624 0.000 0.036 0.340
#> SRR1201730 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1201734 2 0.0937 0.9644 0 0.960 0.000 0.000 0.000 0.040
#> SRR1201733 5 0.2219 0.8275 0 0.000 0.000 0.136 0.864 0.000
#> SRR1201736 5 0.0935 0.8752 0 0.000 0.000 0.032 0.964 0.004
#> SRR1201737 6 0.3405 0.5335 0 0.000 0.272 0.000 0.004 0.724
#> SRR1201739 6 0.5088 0.5592 0 0.168 0.180 0.000 0.004 0.648
#> SRR1201738 5 0.2219 0.8275 0 0.000 0.000 0.136 0.864 0.000
#> SRR1201742 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1201743 6 0.3468 0.5216 0 0.000 0.284 0.000 0.004 0.712
#> SRR1201745 2 0.0260 0.9854 0 0.992 0.000 0.000 0.000 0.008
#> SRR1201744 5 0.4015 0.4992 0 0.000 0.000 0.372 0.616 0.012
#> SRR1201749 5 0.2219 0.8275 0 0.000 0.000 0.136 0.864 0.000
#> SRR1201750 6 0.4361 0.5717 0 0.204 0.076 0.000 0.004 0.716
#> SRR1201752 3 0.5142 0.4953 0 0.000 0.584 0.000 0.112 0.304
#> SRR1201751 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1201754 6 0.5002 0.5466 0 0.136 0.228 0.000 0.000 0.636
#> SRR1201753 5 0.0914 0.8840 0 0.000 0.000 0.016 0.968 0.016
#> SRR1201758 4 0.3110 0.9233 0 0.000 0.000 0.792 0.196 0.012
#> SRR1201759 4 0.3839 0.9080 0 0.000 0.020 0.776 0.172 0.032
#> SRR1201760 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1201761 3 0.3727 0.6900 0 0.000 0.784 0.000 0.088 0.128
#> SRR1201763 4 0.2219 0.9310 0 0.000 0.000 0.864 0.136 0.000
#> SRR1201762 4 0.2491 0.9393 0 0.000 0.000 0.836 0.164 0.000
#> SRR1201764 4 0.3284 0.9202 0 0.000 0.000 0.784 0.196 0.020
#> SRR1201766 5 0.2260 0.8260 0 0.000 0.000 0.140 0.860 0.000
#> SRR1201768 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201769 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201767 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201770 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201771 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201772 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201773 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201774 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201786 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201784 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201785 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201778 5 0.2219 0.8275 0 0.000 0.000 0.136 0.864 0.000
#> SRR1201779 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201781 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201780 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201783 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201782 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201798 2 0.0790 0.9726 0 0.968 0.000 0.000 0.000 0.032
#> SRR1201797 2 0.0790 0.9726 0 0.968 0.000 0.000 0.000 0.032
#> SRR1201796 2 0.0790 0.9726 0 0.968 0.000 0.000 0.000 0.032
#> SRR1201795 2 0.0790 0.9726 0 0.968 0.000 0.000 0.000 0.032
#> SRR1201799 2 0.0790 0.9726 0 0.968 0.000 0.000 0.000 0.032
#> SRR1201794 2 0.0790 0.9726 0 0.968 0.000 0.000 0.000 0.032
#> SRR1201793 2 0.0790 0.9726 0 0.968 0.000 0.000 0.000 0.032
#> SRR1201792 2 0.0790 0.9726 0 0.968 0.000 0.000 0.000 0.032
#> SRR1201791 5 0.2219 0.8275 0 0.000 0.000 0.136 0.864 0.000
#> SRR1201807 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201808 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201803 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201804 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201805 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201806 2 0.0146 0.9869 0 0.996 0.000 0.000 0.000 0.004
#> SRR1201801 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201802 2 0.0000 0.9880 0 1.000 0.000 0.000 0.000 0.000
#> SRR1201800 5 0.2219 0.8275 0 0.000 0.000 0.136 0.864 0.000
#> SRR1201814 2 0.0146 0.9870 0 0.996 0.000 0.000 0.000 0.004
#> SRR1201816 2 0.0146 0.9870 0 0.996 0.000 0.000 0.000 0.004
#> SRR1201815 2 0.0146 0.9870 0 0.996 0.000 0.000 0.000 0.004
#> SRR1201819 2 0.0146 0.9870 0 0.996 0.000 0.000 0.000 0.004
#> SRR1201820 2 0.0146 0.9870 0 0.996 0.000 0.000 0.000 0.004
#> SRR1201813 5 0.2362 0.8256 0 0.000 0.000 0.136 0.860 0.004
#> SRR1201817 2 0.0146 0.9870 0 0.996 0.000 0.000 0.000 0.004
#> SRR1201818 2 0.0146 0.9870 0 0.996 0.000 0.000 0.000 0.004
#> SRR1201825 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1201827 6 0.5982 0.4386 0 0.000 0.216 0.312 0.004 0.468
#> SRR1201828 6 0.5982 0.4386 0 0.000 0.216 0.312 0.004 0.468
#> SRR1201826 5 0.1321 0.8677 0 0.000 0.004 0.020 0.952 0.024
#> SRR1201829 6 0.5982 0.4386 0 0.000 0.216 0.312 0.004 0.468
#> SRR1201830 6 0.5982 0.4386 0 0.000 0.216 0.312 0.004 0.468
#> SRR1201831 6 0.5982 0.4386 0 0.000 0.216 0.312 0.004 0.468
#> SRR1201832 6 0.5982 0.4386 0 0.000 0.216 0.312 0.004 0.468
#> SRR1201833 6 0.5982 0.4386 0 0.000 0.216 0.312 0.004 0.468
#> SRR1201865 3 0.4972 0.5466 0 0.000 0.628 0.000 0.116 0.256
#> SRR1201866 3 0.4972 0.5466 0 0.000 0.628 0.000 0.116 0.256
#> SRR1201867 3 0.4972 0.5466 0 0.000 0.628 0.000 0.116 0.256
#> SRR1201861 3 0.4972 0.5466 0 0.000 0.628 0.000 0.116 0.256
#> SRR1201862 3 0.4972 0.5466 0 0.000 0.628 0.000 0.116 0.256
#> SRR1201863 3 0.4972 0.5466 0 0.000 0.628 0.000 0.116 0.256
#> SRR1201859 5 0.2060 0.8155 0 0.000 0.000 0.084 0.900 0.016
#> SRR1201864 3 0.4972 0.5466 0 0.000 0.628 0.000 0.116 0.256
#> SRR1201860 3 0.4972 0.5466 0 0.000 0.628 0.000 0.116 0.256
#> SRR1201873 3 0.3792 0.6723 0 0.000 0.780 0.000 0.112 0.108
#> SRR1201871 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1201872 3 0.3792 0.6723 0 0.000 0.780 0.000 0.112 0.108
#> SRR1201980 3 0.3595 0.6943 0 0.000 0.796 0.000 0.084 0.120
#> SRR1201979 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1201982 3 0.4427 0.5620 0 0.000 0.660 0.000 0.056 0.284
#> SRR1201981 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1201998 6 0.4165 0.0366 0 0.000 0.452 0.000 0.012 0.536
#> SRR1201996 5 0.0632 0.8815 0 0.000 0.000 0.000 0.976 0.024
#> SRR1201997 6 0.3883 0.4318 0 0.000 0.332 0.000 0.012 0.656
#> SRR1202005 6 0.6854 0.3602 0 0.092 0.148 0.000 0.320 0.440
#> SRR1202006 6 0.4297 0.6183 0 0.132 0.096 0.000 0.016 0.756
#> SRR1202088 3 0.3975 0.2628 0 0.000 0.544 0.000 0.004 0.452
#> SRR1202087 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1202093 6 0.2544 0.6513 0 0.004 0.140 0.000 0.004 0.852
#> SRR1202092 5 0.1910 0.8427 0 0.000 0.000 0.108 0.892 0.000
#> SRR1202288 5 0.2219 0.8275 0 0.000 0.000 0.136 0.864 0.000
#> SRR1202289 2 0.0547 0.9799 0 0.980 0.000 0.000 0.000 0.020
#> SRR1202299 2 0.0790 0.9741 0 0.968 0.000 0.000 0.000 0.032
#> SRR1202298 5 0.2219 0.8275 0 0.000 0.000 0.136 0.864 0.000
#> SRR1202303 4 0.2219 0.9310 0 0.000 0.000 0.864 0.136 0.000
#> SRR1202372 2 0.0458 0.9823 0 0.984 0.000 0.000 0.000 0.016
#> SRR1202371 5 0.2219 0.8275 0 0.000 0.000 0.136 0.864 0.000
#> SRR1202563 5 0.0603 0.8848 0 0.000 0.000 0.004 0.980 0.016
#> SRR1202565 6 0.3455 0.6375 0 0.000 0.180 0.000 0.036 0.784
#> SRR1202564 6 0.3566 0.6386 0 0.000 0.156 0.000 0.056 0.788
#> SRR1202649 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1202650 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1202651 6 0.3752 0.6263 0 0.036 0.200 0.000 0.004 0.760
#> SRR1202843 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202845 5 0.4601 0.3198 0 0.000 0.008 0.308 0.640 0.044
#> SRR1202847 6 0.5364 0.3880 0 0.004 0.048 0.120 0.144 0.684
#> SRR1202846 6 0.5364 0.3880 0 0.004 0.048 0.120 0.144 0.684
#> SRR1202945 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.3017 0.6998 0 0.000 0.840 0.000 0.052 0.108
#> SRR1203131 5 0.0458 0.8868 0 0.000 0.000 0.000 0.984 0.016
#> SRR1203133 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203827 4 0.2165 0.8714 0 0.000 0.000 0.884 0.108 0.008
#> SRR1203828 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203842 4 0.2165 0.8714 0 0.000 0.000 0.884 0.108 0.008
#> SRR1203843 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203845 6 0.5553 0.5313 0 0.168 0.060 0.000 0.116 0.656
#> SRR1203844 5 0.0858 0.8822 0 0.000 0.000 0.004 0.968 0.028
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["MAD", "NMF"]
# you can also extract it by
# res = res_list["MAD:NMF"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'MAD' method.
#> Subgroups are detected by 'NMF' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 2.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 0.994 0.998 0.3789 0.621 0.621
#> 3 3 0.842 0.902 0.955 0.7216 0.717 0.546
#> 4 4 0.745 0.737 0.878 0.0963 0.895 0.714
#> 5 5 0.705 0.717 0.818 0.0543 0.834 0.537
#> 6 6 0.711 0.706 0.821 0.0253 0.968 0.879
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 2
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0.000 0.999 0.000 1.000
#> SRR1201590 2 0.000 0.999 0.000 1.000
#> SRR1201593 2 0.000 0.999 0.000 1.000
#> SRR1201592 2 0.000 0.999 0.000 1.000
#> SRR1201617 2 0.000 0.999 0.000 1.000
#> SRR1201616 2 0.000 0.999 0.000 1.000
#> SRR1201619 2 0.000 0.999 0.000 1.000
#> SRR1201618 2 0.000 0.999 0.000 1.000
#> SRR1201620 2 0.000 0.999 0.000 1.000
#> SRR1201621 2 0.000 0.999 0.000 1.000
#> SRR1201623 2 0.000 0.999 0.000 1.000
#> SRR1201622 2 0.000 0.999 0.000 1.000
#> SRR1201624 2 0.000 0.999 0.000 1.000
#> SRR1201625 2 0.000 0.999 0.000 1.000
#> SRR1201626 2 0.000 0.999 0.000 1.000
#> SRR1201627 2 0.000 0.999 0.000 1.000
#> SRR1201628 2 0.000 0.999 0.000 1.000
#> SRR1201629 2 0.000 0.999 0.000 1.000
#> SRR1201630 2 0.000 0.999 0.000 1.000
#> SRR1201631 2 0.000 0.999 0.000 1.000
#> SRR1201641 2 0.000 0.999 0.000 1.000
#> SRR1201640 2 0.000 0.999 0.000 1.000
#> SRR1201643 2 0.000 0.999 0.000 1.000
#> SRR1201644 2 0.000 0.999 0.000 1.000
#> SRR1201661 2 0.000 0.999 0.000 1.000
#> SRR1201662 2 0.000 0.999 0.000 1.000
#> SRR1201663 2 0.000 0.999 0.000 1.000
#> SRR1201664 2 0.000 0.999 0.000 1.000
#> SRR1201665 2 0.000 0.999 0.000 1.000
#> SRR1201666 2 0.000 0.999 0.000 1.000
#> SRR1201667 2 0.000 0.999 0.000 1.000
#> SRR1201668 2 0.000 0.999 0.000 1.000
#> SRR1201670 2 0.000 0.999 0.000 1.000
#> SRR1201669 2 0.000 0.999 0.000 1.000
#> SRR1201673 2 0.000 0.999 0.000 1.000
#> SRR1201672 2 0.000 0.999 0.000 1.000
#> SRR1201671 2 0.000 0.999 0.000 1.000
#> SRR1201677 2 0.000 0.999 0.000 1.000
#> SRR1201676 2 0.000 0.999 0.000 1.000
#> SRR1201675 2 0.000 0.999 0.000 1.000
#> SRR1201674 2 0.000 0.999 0.000 1.000
#> SRR1201678 2 0.000 0.999 0.000 1.000
#> SRR1201682 2 0.000 0.999 0.000 1.000
#> SRR1201683 2 0.000 0.999 0.000 1.000
#> SRR1201680 2 0.000 0.999 0.000 1.000
#> SRR1201681 2 0.000 0.999 0.000 1.000
#> SRR1201679 2 0.000 0.999 0.000 1.000
#> SRR1201686 2 0.000 0.999 0.000 1.000
#> SRR1201687 2 0.000 0.999 0.000 1.000
#> SRR1201688 2 0.000 0.999 0.000 1.000
#> SRR1201689 2 0.000 0.999 0.000 1.000
#> SRR1201685 2 0.000 0.999 0.000 1.000
#> SRR1201692 2 0.000 0.999 0.000 1.000
#> SRR1201691 2 0.000 0.999 0.000 1.000
#> SRR1201690 2 0.000 0.999 0.000 1.000
#> SRR1201696 2 0.000 0.999 0.000 1.000
#> SRR1201695 2 0.000 0.999 0.000 1.000
#> SRR1201694 2 0.000 0.999 0.000 1.000
#> SRR1201693 2 0.000 0.999 0.000 1.000
#> SRR1201697 2 0.000 0.999 0.000 1.000
#> SRR1201698 2 0.000 0.999 0.000 1.000
#> SRR1201700 2 0.000 0.999 0.000 1.000
#> SRR1201708 2 0.000 0.999 0.000 1.000
#> SRR1201707 2 0.000 0.999 0.000 1.000
#> SRR1201706 2 0.000 0.999 0.000 1.000
#> SRR1201702 2 0.000 0.999 0.000 1.000
#> SRR1201705 2 0.000 0.999 0.000 1.000
#> SRR1201701 2 0.000 0.999 0.000 1.000
#> SRR1201704 2 0.000 0.999 0.000 1.000
#> SRR1201703 2 0.000 0.999 0.000 1.000
#> SRR1201716 2 0.000 0.999 0.000 1.000
#> SRR1201715 2 0.000 0.999 0.000 1.000
#> SRR1201717 2 0.000 0.999 0.000 1.000
#> SRR1201712 2 0.000 0.999 0.000 1.000
#> SRR1201709 2 0.000 0.999 0.000 1.000
#> SRR1201711 2 0.000 0.999 0.000 1.000
#> SRR1201714 2 0.000 0.999 0.000 1.000
#> SRR1201713 2 0.000 0.999 0.000 1.000
#> SRR1201710 2 0.000 0.999 0.000 1.000
#> SRR1201719 2 0.000 0.999 0.000 1.000
#> SRR1201718 2 0.000 0.999 0.000 1.000
#> SRR1201721 2 0.000 0.999 0.000 1.000
#> SRR1201720 2 0.000 0.999 0.000 1.000
#> SRR1201723 2 0.000 0.999 0.000 1.000
#> SRR1201722 2 0.000 0.999 0.000 1.000
#> SRR1201725 2 0.000 0.999 0.000 1.000
#> SRR1201724 2 0.000 0.999 0.000 1.000
#> SRR1201726 2 0.000 0.999 0.000 1.000
#> SRR1201727 2 0.000 0.999 0.000 1.000
#> SRR1201731 2 0.000 0.999 0.000 1.000
#> SRR1201730 2 0.000 0.999 0.000 1.000
#> SRR1201734 2 0.000 0.999 0.000 1.000
#> SRR1201733 2 0.000 0.999 0.000 1.000
#> SRR1201736 2 0.000 0.999 0.000 1.000
#> SRR1201737 2 0.000 0.999 0.000 1.000
#> SRR1201739 2 0.000 0.999 0.000 1.000
#> SRR1201738 2 0.000 0.999 0.000 1.000
#> SRR1201742 2 0.000 0.999 0.000 1.000
#> SRR1201743 2 0.000 0.999 0.000 1.000
#> SRR1201745 2 0.000 0.999 0.000 1.000
#> SRR1201744 2 0.000 0.999 0.000 1.000
#> SRR1201749 2 0.000 0.999 0.000 1.000
#> SRR1201750 2 0.000 0.999 0.000 1.000
#> SRR1201752 2 0.000 0.999 0.000 1.000
#> SRR1201751 2 0.000 0.999 0.000 1.000
#> SRR1201754 2 0.000 0.999 0.000 1.000
#> SRR1201753 2 0.000 0.999 0.000 1.000
#> SRR1201758 2 0.000 0.999 0.000 1.000
#> SRR1201759 2 0.000 0.999 0.000 1.000
#> SRR1201760 2 0.000 0.999 0.000 1.000
#> SRR1201761 2 0.000 0.999 0.000 1.000
#> SRR1201763 2 0.000 0.999 0.000 1.000
#> SRR1201762 2 0.000 0.999 0.000 1.000
#> SRR1201764 2 0.000 0.999 0.000 1.000
#> SRR1201766 2 0.000 0.999 0.000 1.000
#> SRR1201768 2 0.000 0.999 0.000 1.000
#> SRR1201769 2 0.000 0.999 0.000 1.000
#> SRR1201767 2 0.000 0.999 0.000 1.000
#> SRR1201770 2 0.000 0.999 0.000 1.000
#> SRR1201771 2 0.000 0.999 0.000 1.000
#> SRR1201772 2 0.000 0.999 0.000 1.000
#> SRR1201773 2 0.000 0.999 0.000 1.000
#> SRR1201774 2 0.000 0.999 0.000 1.000
#> SRR1201786 2 0.000 0.999 0.000 1.000
#> SRR1201784 2 0.000 0.999 0.000 1.000
#> SRR1201785 2 0.000 0.999 0.000 1.000
#> SRR1201778 2 0.000 0.999 0.000 1.000
#> SRR1201779 2 0.000 0.999 0.000 1.000
#> SRR1201781 2 0.000 0.999 0.000 1.000
#> SRR1201780 2 0.000 0.999 0.000 1.000
#> SRR1201783 2 0.000 0.999 0.000 1.000
#> SRR1201782 2 0.000 0.999 0.000 1.000
#> SRR1201798 2 0.000 0.999 0.000 1.000
#> SRR1201797 2 0.000 0.999 0.000 1.000
#> SRR1201796 2 0.000 0.999 0.000 1.000
#> SRR1201795 2 0.000 0.999 0.000 1.000
#> SRR1201799 2 0.000 0.999 0.000 1.000
#> SRR1201794 2 0.000 0.999 0.000 1.000
#> SRR1201793 2 0.000 0.999 0.000 1.000
#> SRR1201792 2 0.000 0.999 0.000 1.000
#> SRR1201791 2 0.000 0.999 0.000 1.000
#> SRR1201807 2 0.000 0.999 0.000 1.000
#> SRR1201808 2 0.000 0.999 0.000 1.000
#> SRR1201803 2 0.000 0.999 0.000 1.000
#> SRR1201804 2 0.000 0.999 0.000 1.000
#> SRR1201805 2 0.000 0.999 0.000 1.000
#> SRR1201806 2 0.000 0.999 0.000 1.000
#> SRR1201801 2 0.000 0.999 0.000 1.000
#> SRR1201802 2 0.000 0.999 0.000 1.000
#> SRR1201800 2 0.000 0.999 0.000 1.000
#> SRR1201814 2 0.000 0.999 0.000 1.000
#> SRR1201816 2 0.000 0.999 0.000 1.000
#> SRR1201815 2 0.000 0.999 0.000 1.000
#> SRR1201819 2 0.000 0.999 0.000 1.000
#> SRR1201820 2 0.000 0.999 0.000 1.000
#> SRR1201813 2 0.000 0.999 0.000 1.000
#> SRR1201817 2 0.000 0.999 0.000 1.000
#> SRR1201818 2 0.000 0.999 0.000 1.000
#> SRR1201825 2 0.000 0.999 0.000 1.000
#> SRR1201827 2 0.000 0.999 0.000 1.000
#> SRR1201828 2 0.000 0.999 0.000 1.000
#> SRR1201826 2 0.000 0.999 0.000 1.000
#> SRR1201829 2 0.000 0.999 0.000 1.000
#> SRR1201830 2 0.000 0.999 0.000 1.000
#> SRR1201831 2 0.000 0.999 0.000 1.000
#> SRR1201832 2 0.000 0.999 0.000 1.000
#> SRR1201833 2 0.000 0.999 0.000 1.000
#> SRR1201865 2 0.000 0.999 0.000 1.000
#> SRR1201866 2 0.000 0.999 0.000 1.000
#> SRR1201867 2 0.000 0.999 0.000 1.000
#> SRR1201861 2 0.000 0.999 0.000 1.000
#> SRR1201862 2 0.000 0.999 0.000 1.000
#> SRR1201863 2 0.000 0.999 0.000 1.000
#> SRR1201859 2 0.000 0.999 0.000 1.000
#> SRR1201864 2 0.000 0.999 0.000 1.000
#> SRR1201860 2 0.000 0.999 0.000 1.000
#> SRR1201873 2 0.000 0.999 0.000 1.000
#> SRR1201871 2 0.000 0.999 0.000 1.000
#> SRR1201872 2 0.000 0.999 0.000 1.000
#> SRR1201980 2 0.000 0.999 0.000 1.000
#> SRR1201979 2 0.000 0.999 0.000 1.000
#> SRR1201982 2 0.000 0.999 0.000 1.000
#> SRR1201981 2 0.000 0.999 0.000 1.000
#> SRR1201998 2 0.000 0.999 0.000 1.000
#> SRR1201996 2 0.000 0.999 0.000 1.000
#> SRR1201997 2 0.000 0.999 0.000 1.000
#> SRR1202005 2 0.000 0.999 0.000 1.000
#> SRR1202006 2 0.000 0.999 0.000 1.000
#> SRR1202088 2 0.000 0.999 0.000 1.000
#> SRR1202087 2 0.000 0.999 0.000 1.000
#> SRR1202093 2 0.000 0.999 0.000 1.000
#> SRR1202092 2 0.000 0.999 0.000 1.000
#> SRR1202288 2 0.000 0.999 0.000 1.000
#> SRR1202289 2 0.000 0.999 0.000 1.000
#> SRR1202299 2 0.000 0.999 0.000 1.000
#> SRR1202298 2 0.000 0.999 0.000 1.000
#> SRR1202303 2 0.000 0.999 0.000 1.000
#> SRR1202372 2 0.000 0.999 0.000 1.000
#> SRR1202371 2 0.000 0.999 0.000 1.000
#> SRR1202563 2 0.000 0.999 0.000 1.000
#> SRR1202565 2 0.000 0.999 0.000 1.000
#> SRR1202564 2 0.000 0.999 0.000 1.000
#> SRR1202649 2 0.000 0.999 0.000 1.000
#> SRR1202650 2 0.000 0.999 0.000 1.000
#> SRR1202651 2 0.000 0.999 0.000 1.000
#> SRR1202843 1 0.000 0.994 1.000 0.000
#> SRR1202844 1 0.000 0.994 1.000 0.000
#> SRR1202845 2 0.000 0.999 0.000 1.000
#> SRR1202847 2 0.000 0.999 0.000 1.000
#> SRR1202846 2 0.000 0.999 0.000 1.000
#> SRR1202945 1 0.000 0.994 1.000 0.000
#> SRR1202949 1 0.000 0.994 1.000 0.000
#> SRR1202977 1 0.000 0.994 1.000 0.000
#> SRR1202978 1 0.000 0.994 1.000 0.000
#> SRR1202979 1 0.000 0.994 1.000 0.000
#> SRR1202990 1 0.000 0.994 1.000 0.000
#> SRR1202999 1 0.000 0.994 1.000 0.000
#> SRR1203005 1 0.000 0.994 1.000 0.000
#> SRR1203006 1 0.000 0.994 1.000 0.000
#> SRR1203007 1 0.000 0.994 1.000 0.000
#> SRR1203009 1 0.000 0.994 1.000 0.000
#> SRR1203008 1 0.402 0.910 0.920 0.080
#> SRR1203010 1 0.000 0.994 1.000 0.000
#> SRR1203011 1 0.000 0.994 1.000 0.000
#> SRR1203025 1 0.000 0.994 1.000 0.000
#> SRR1203026 1 0.000 0.994 1.000 0.000
#> SRR1203027 1 0.000 0.994 1.000 0.000
#> SRR1203061 1 0.000 0.994 1.000 0.000
#> SRR1203089 1 0.000 0.994 1.000 0.000
#> SRR1203125 1 0.000 0.994 1.000 0.000
#> SRR1203128 1 0.000 0.994 1.000 0.000
#> SRR1203129 1 0.000 0.994 1.000 0.000
#> SRR1203130 1 0.000 0.994 1.000 0.000
#> SRR1203132 2 0.000 0.999 0.000 1.000
#> SRR1203131 2 0.000 0.999 0.000 1.000
#> SRR1203133 1 0.000 0.994 1.000 0.000
#> SRR1203138 1 0.000 0.994 1.000 0.000
#> SRR1203760 1 0.000 0.994 1.000 0.000
#> SRR1203761 1 0.000 0.994 1.000 0.000
#> SRR1203770 1 0.000 0.994 1.000 0.000
#> SRR1203771 1 0.000 0.994 1.000 0.000
#> SRR1203772 1 0.000 0.994 1.000 0.000
#> SRR1203773 1 0.000 0.994 1.000 0.000
#> SRR1203774 1 0.000 0.994 1.000 0.000
#> SRR1203775 1 0.000 0.994 1.000 0.000
#> SRR1203800 1 0.000 0.994 1.000 0.000
#> SRR1203801 1 0.000 0.994 1.000 0.000
#> SRR1203802 1 0.000 0.994 1.000 0.000
#> SRR1203803 1 0.000 0.994 1.000 0.000
#> SRR1203804 1 0.000 0.994 1.000 0.000
#> SRR1203805 1 0.000 0.994 1.000 0.000
#> SRR1203806 1 0.000 0.994 1.000 0.000
#> SRR1203807 1 0.000 0.994 1.000 0.000
#> SRR1203808 1 0.000 0.994 1.000 0.000
#> SRR1203811 1 0.000 0.994 1.000 0.000
#> SRR1203812 1 0.000 0.994 1.000 0.000
#> SRR1203813 1 0.000 0.994 1.000 0.000
#> SRR1203814 1 0.000 0.994 1.000 0.000
#> SRR1203815 1 0.000 0.994 1.000 0.000
#> SRR1203816 1 0.000 0.994 1.000 0.000
#> SRR1203817 1 0.000 0.994 1.000 0.000
#> SRR1203818 1 0.000 0.994 1.000 0.000
#> SRR1203819 1 0.000 0.994 1.000 0.000
#> SRR1203822 1 0.000 0.994 1.000 0.000
#> SRR1203823 1 0.000 0.994 1.000 0.000
#> SRR1203824 1 0.000 0.994 1.000 0.000
#> SRR1203825 1 0.000 0.994 1.000 0.000
#> SRR1203826 1 0.000 0.994 1.000 0.000
#> SRR1203827 2 0.802 0.674 0.244 0.756
#> SRR1203828 1 0.000 0.994 1.000 0.000
#> SRR1203829 1 0.000 0.994 1.000 0.000
#> SRR1203830 1 0.000 0.994 1.000 0.000
#> SRR1203831 1 0.000 0.994 1.000 0.000
#> SRR1203832 1 0.000 0.994 1.000 0.000
#> SRR1203833 1 0.000 0.994 1.000 0.000
#> SRR1203834 1 0.000 0.994 1.000 0.000
#> SRR1203835 1 0.000 0.994 1.000 0.000
#> SRR1203836 1 0.000 0.994 1.000 0.000
#> SRR1203837 1 0.000 0.994 1.000 0.000
#> SRR1203838 1 0.000 0.994 1.000 0.000
#> SRR1203839 1 0.000 0.994 1.000 0.000
#> SRR1203842 1 0.932 0.466 0.652 0.348
#> SRR1203843 1 0.000 0.994 1.000 0.000
#> SRR1203845 2 0.000 0.999 0.000 1.000
#> SRR1203844 2 0.000 0.999 0.000 1.000
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201590 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201593 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201592 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201617 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201616 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201619 2 0.0892 0.9244 0.000 0.980 0.020
#> SRR1201618 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201620 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201621 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201623 3 0.0424 0.9316 0.000 0.008 0.992
#> SRR1201622 3 0.5497 0.6087 0.000 0.292 0.708
#> SRR1201624 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201625 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201626 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201627 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201628 3 0.6045 0.4007 0.000 0.380 0.620
#> SRR1201629 3 0.0424 0.9316 0.000 0.008 0.992
#> SRR1201630 2 0.2537 0.8834 0.000 0.920 0.080
#> SRR1201631 2 0.4654 0.7482 0.000 0.792 0.208
#> SRR1201641 2 0.6026 0.4286 0.000 0.624 0.376
#> SRR1201640 2 0.4504 0.7649 0.000 0.804 0.196
#> SRR1201643 2 0.5591 0.5937 0.000 0.696 0.304
#> SRR1201644 3 0.4235 0.7920 0.000 0.176 0.824
#> SRR1201661 2 0.3879 0.8162 0.000 0.848 0.152
#> SRR1201662 2 0.5016 0.7023 0.000 0.760 0.240
#> SRR1201663 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201664 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201665 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201666 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201667 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201668 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201670 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201669 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201673 3 0.2959 0.8772 0.000 0.100 0.900
#> SRR1201672 3 0.3038 0.8742 0.000 0.104 0.896
#> SRR1201671 2 0.5733 0.5532 0.000 0.676 0.324
#> SRR1201677 3 0.3116 0.8707 0.000 0.108 0.892
#> SRR1201676 3 0.3038 0.8741 0.000 0.104 0.896
#> SRR1201675 3 0.3038 0.8739 0.000 0.104 0.896
#> SRR1201674 3 0.2959 0.8772 0.000 0.100 0.900
#> SRR1201678 3 0.3267 0.8638 0.000 0.116 0.884
#> SRR1201682 2 0.0747 0.9265 0.000 0.984 0.016
#> SRR1201683 2 0.1163 0.9198 0.000 0.972 0.028
#> SRR1201680 2 0.1031 0.9223 0.000 0.976 0.024
#> SRR1201681 2 0.1163 0.9200 0.000 0.972 0.028
#> SRR1201679 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201686 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201687 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201688 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201689 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201685 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201692 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201691 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201690 3 0.4842 0.7212 0.000 0.224 0.776
#> SRR1201696 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201695 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201694 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201693 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201697 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201698 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201700 3 0.0424 0.9317 0.000 0.008 0.992
#> SRR1201708 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201707 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201706 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201702 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201705 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201701 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201704 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201703 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201716 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201715 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201717 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201712 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201709 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201711 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201714 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201713 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201710 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201719 2 0.6180 0.3159 0.000 0.584 0.416
#> SRR1201718 2 0.5621 0.5855 0.000 0.692 0.308
#> SRR1201721 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201720 3 0.3267 0.8584 0.000 0.116 0.884
#> SRR1201723 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201722 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201725 3 0.5397 0.6341 0.000 0.280 0.720
#> SRR1201724 2 0.5178 0.6782 0.000 0.744 0.256
#> SRR1201726 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201727 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201731 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201730 3 0.3752 0.8287 0.000 0.144 0.856
#> SRR1201734 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201733 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201736 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201737 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201739 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201738 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201742 2 0.0424 0.9308 0.000 0.992 0.008
#> SRR1201743 2 0.2356 0.8899 0.000 0.928 0.072
#> SRR1201745 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201744 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201749 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201750 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201752 3 0.0747 0.9278 0.000 0.016 0.984
#> SRR1201751 3 0.4842 0.7254 0.000 0.224 0.776
#> SRR1201754 2 0.1529 0.9119 0.000 0.960 0.040
#> SRR1201753 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201758 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201759 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201760 3 0.6045 0.4009 0.000 0.380 0.620
#> SRR1201761 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201763 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201762 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201764 3 0.0237 0.9332 0.000 0.004 0.996
#> SRR1201766 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201768 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201769 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201767 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201770 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201771 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201772 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201773 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201774 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201786 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201784 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201785 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201778 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201779 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201781 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201780 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201783 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201782 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201798 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201797 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201796 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201795 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201799 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201794 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201793 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201792 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201791 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201807 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201808 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201803 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201804 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201805 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201806 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201801 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201802 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201800 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201814 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201816 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201815 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201819 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201820 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201813 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201817 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201818 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1201825 3 0.6168 0.3040 0.000 0.412 0.588
#> SRR1201827 3 0.0237 0.9332 0.000 0.004 0.996
#> SRR1201828 3 0.0237 0.9332 0.000 0.004 0.996
#> SRR1201826 2 0.6260 0.2135 0.000 0.552 0.448
#> SRR1201829 3 0.0237 0.9332 0.000 0.004 0.996
#> SRR1201830 3 0.0237 0.9332 0.000 0.004 0.996
#> SRR1201831 3 0.0237 0.9332 0.000 0.004 0.996
#> SRR1201832 3 0.0237 0.9332 0.000 0.004 0.996
#> SRR1201833 3 0.0237 0.9332 0.000 0.004 0.996
#> SRR1201865 3 0.2448 0.8930 0.000 0.076 0.924
#> SRR1201866 3 0.2356 0.8958 0.000 0.072 0.928
#> SRR1201867 3 0.2537 0.8901 0.000 0.080 0.920
#> SRR1201861 3 0.2537 0.8901 0.000 0.080 0.920
#> SRR1201862 3 0.2356 0.8958 0.000 0.072 0.928
#> SRR1201863 3 0.2796 0.8809 0.000 0.092 0.908
#> SRR1201859 2 0.3412 0.8437 0.000 0.876 0.124
#> SRR1201864 3 0.2711 0.8840 0.000 0.088 0.912
#> SRR1201860 3 0.2448 0.8930 0.000 0.076 0.924
#> SRR1201873 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201871 3 0.5098 0.6843 0.000 0.248 0.752
#> SRR1201872 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201980 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1201979 3 0.5591 0.5825 0.000 0.304 0.696
#> SRR1201982 3 0.0747 0.9278 0.000 0.016 0.984
#> SRR1201981 2 0.6302 0.0973 0.000 0.520 0.480
#> SRR1201998 3 0.5560 0.5956 0.000 0.300 0.700
#> SRR1201996 2 0.4605 0.7546 0.000 0.796 0.204
#> SRR1201997 3 0.6305 0.0497 0.000 0.484 0.516
#> SRR1202005 2 0.2537 0.8830 0.000 0.920 0.080
#> SRR1202006 2 0.3116 0.8587 0.000 0.892 0.108
#> SRR1202088 3 0.4750 0.7374 0.000 0.216 0.784
#> SRR1202087 3 0.5216 0.6882 0.000 0.260 0.740
#> SRR1202093 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1202092 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1202288 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1202289 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1202299 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1202298 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1202303 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1202372 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1202371 2 0.0000 0.9348 0.000 1.000 0.000
#> SRR1202563 2 0.4399 0.7745 0.000 0.812 0.188
#> SRR1202565 2 0.5650 0.5757 0.000 0.688 0.312
#> SRR1202564 2 0.5560 0.5995 0.000 0.700 0.300
#> SRR1202649 2 0.3482 0.8398 0.000 0.872 0.128
#> SRR1202650 2 0.3816 0.8208 0.000 0.852 0.148
#> SRR1202651 2 0.2537 0.8829 0.000 0.920 0.080
#> SRR1202843 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1202845 2 0.1860 0.9039 0.000 0.948 0.052
#> SRR1202847 2 0.4399 0.7732 0.000 0.812 0.188
#> SRR1202846 2 0.4654 0.7478 0.000 0.792 0.208
#> SRR1202945 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203009 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203008 1 0.3456 0.9054 0.904 0.060 0.036
#> SRR1203010 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203132 3 0.0000 0.9343 0.000 0.000 1.000
#> SRR1203131 2 0.6204 0.2958 0.000 0.576 0.424
#> SRR1203133 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203827 2 0.0592 0.9264 0.012 0.988 0.000
#> SRR1203828 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203842 2 0.3267 0.8391 0.116 0.884 0.000
#> SRR1203843 1 0.0000 0.9987 1.000 0.000 0.000
#> SRR1203845 2 0.2261 0.8923 0.000 0.932 0.068
#> SRR1203844 2 0.0000 0.9348 0.000 1.000 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.0707 0.8460 0.000 0.980 0.000 0.020
#> SRR1201590 2 0.1109 0.8423 0.000 0.968 0.028 0.004
#> SRR1201593 2 0.0707 0.8460 0.000 0.980 0.000 0.020
#> SRR1201592 2 0.1109 0.8423 0.000 0.968 0.028 0.004
#> SRR1201617 2 0.0707 0.8460 0.000 0.980 0.000 0.020
#> SRR1201616 2 0.1109 0.8423 0.000 0.968 0.028 0.004
#> SRR1201619 2 0.3257 0.7635 0.000 0.844 0.004 0.152
#> SRR1201618 2 0.3257 0.7693 0.000 0.844 0.152 0.004
#> SRR1201620 2 0.1109 0.8423 0.000 0.968 0.028 0.004
#> SRR1201621 2 0.0336 0.8487 0.000 0.992 0.000 0.008
#> SRR1201623 3 0.2976 0.7177 0.000 0.008 0.872 0.120
#> SRR1201622 3 0.2401 0.6969 0.000 0.092 0.904 0.004
#> SRR1201624 3 0.0707 0.7468 0.000 0.000 0.980 0.020
#> SRR1201625 4 0.4072 0.5386 0.000 0.000 0.252 0.748
#> SRR1201626 3 0.3649 0.6608 0.000 0.000 0.796 0.204
#> SRR1201627 4 0.1022 0.6669 0.000 0.000 0.032 0.968
#> SRR1201628 3 0.3355 0.6248 0.000 0.160 0.836 0.004
#> SRR1201629 3 0.6754 -0.1263 0.000 0.092 0.464 0.444
#> SRR1201630 2 0.3402 0.7664 0.000 0.832 0.164 0.004
#> SRR1201631 2 0.4382 0.6086 0.000 0.704 0.000 0.296
#> SRR1201641 2 0.5250 0.2877 0.000 0.552 0.008 0.440
#> SRR1201640 2 0.4220 0.6880 0.000 0.748 0.248 0.004
#> SRR1201643 2 0.5168 0.1770 0.000 0.500 0.496 0.004
#> SRR1201644 4 0.6315 0.2267 0.000 0.396 0.064 0.540
#> SRR1201661 2 0.3945 0.7200 0.000 0.780 0.216 0.004
#> SRR1201662 2 0.4994 0.2028 0.000 0.520 0.000 0.480
#> SRR1201663 3 0.0336 0.7458 0.000 0.000 0.992 0.008
#> SRR1201664 3 0.1389 0.7470 0.000 0.000 0.952 0.048
#> SRR1201665 2 0.2999 0.7821 0.000 0.864 0.132 0.004
#> SRR1201666 2 0.1302 0.8389 0.000 0.956 0.000 0.044
#> SRR1201667 2 0.1474 0.8350 0.000 0.948 0.000 0.052
#> SRR1201668 3 0.1109 0.7362 0.000 0.028 0.968 0.004
#> SRR1201670 3 0.2081 0.7362 0.000 0.000 0.916 0.084
#> SRR1201669 3 0.2081 0.7362 0.000 0.000 0.916 0.084
#> SRR1201673 4 0.3257 0.6579 0.000 0.152 0.004 0.844
#> SRR1201672 4 0.3257 0.6573 0.000 0.152 0.004 0.844
#> SRR1201671 3 0.5112 0.0438 0.000 0.436 0.560 0.004
#> SRR1201677 4 0.2999 0.6668 0.000 0.132 0.004 0.864
#> SRR1201676 4 0.2831 0.6700 0.000 0.120 0.004 0.876
#> SRR1201675 4 0.3157 0.6627 0.000 0.144 0.004 0.852
#> SRR1201674 4 0.3105 0.6647 0.000 0.140 0.004 0.856
#> SRR1201678 4 0.3208 0.6599 0.000 0.148 0.004 0.848
#> SRR1201682 2 0.4431 0.5927 0.000 0.696 0.000 0.304
#> SRR1201683 2 0.4304 0.6228 0.000 0.716 0.000 0.284
#> SRR1201680 2 0.4406 0.5994 0.000 0.700 0.000 0.300
#> SRR1201681 2 0.4331 0.6172 0.000 0.712 0.000 0.288
#> SRR1201679 2 0.1489 0.8376 0.000 0.952 0.044 0.004
#> SRR1201686 3 0.1118 0.7477 0.000 0.000 0.964 0.036
#> SRR1201687 3 0.1022 0.7478 0.000 0.000 0.968 0.032
#> SRR1201688 3 0.1211 0.7477 0.000 0.000 0.960 0.040
#> SRR1201689 3 0.1022 0.7478 0.000 0.000 0.968 0.032
#> SRR1201685 3 0.0927 0.7417 0.000 0.016 0.976 0.008
#> SRR1201692 4 0.5105 0.2450 0.000 0.004 0.432 0.564
#> SRR1201691 4 0.5016 0.3352 0.000 0.004 0.396 0.600
#> SRR1201690 3 0.2773 0.6749 0.000 0.116 0.880 0.004
#> SRR1201696 4 0.5097 0.2623 0.000 0.004 0.428 0.568
#> SRR1201695 4 0.5126 0.2224 0.000 0.004 0.444 0.552
#> SRR1201694 4 0.5080 0.2851 0.000 0.004 0.420 0.576
#> SRR1201693 4 0.5147 0.1631 0.000 0.004 0.460 0.536
#> SRR1201697 4 0.4991 0.3454 0.000 0.004 0.388 0.608
#> SRR1201698 4 0.4950 0.3645 0.000 0.004 0.376 0.620
#> SRR1201700 3 0.1004 0.7413 0.000 0.024 0.972 0.004
#> SRR1201708 3 0.4277 0.5661 0.000 0.000 0.720 0.280
#> SRR1201707 3 0.4431 0.5288 0.000 0.000 0.696 0.304
#> SRR1201706 3 0.4454 0.5219 0.000 0.000 0.692 0.308
#> SRR1201702 3 0.4454 0.5219 0.000 0.000 0.692 0.308
#> SRR1201705 3 0.4431 0.5274 0.000 0.000 0.696 0.304
#> SRR1201701 3 0.4454 0.5219 0.000 0.000 0.692 0.308
#> SRR1201704 3 0.4331 0.5526 0.000 0.000 0.712 0.288
#> SRR1201703 3 0.4454 0.5219 0.000 0.000 0.692 0.308
#> SRR1201716 3 0.3569 0.6698 0.000 0.000 0.804 0.196
#> SRR1201715 3 0.3610 0.6652 0.000 0.000 0.800 0.200
#> SRR1201717 3 0.3486 0.6771 0.000 0.000 0.812 0.188
#> SRR1201712 3 0.3356 0.6859 0.000 0.000 0.824 0.176
#> SRR1201709 3 0.0779 0.7433 0.000 0.016 0.980 0.004
#> SRR1201711 3 0.3569 0.6698 0.000 0.000 0.804 0.196
#> SRR1201714 3 0.3486 0.6763 0.000 0.000 0.812 0.188
#> SRR1201713 3 0.3569 0.6698 0.000 0.000 0.804 0.196
#> SRR1201710 3 0.3311 0.6886 0.000 0.000 0.828 0.172
#> SRR1201719 4 0.4522 0.4223 0.000 0.320 0.000 0.680
#> SRR1201718 2 0.4220 0.6836 0.000 0.748 0.248 0.004
#> SRR1201721 4 0.4977 0.1782 0.000 0.000 0.460 0.540
#> SRR1201720 3 0.2197 0.7063 0.000 0.080 0.916 0.004
#> SRR1201723 3 0.1940 0.7401 0.000 0.000 0.924 0.076
#> SRR1201722 3 0.0336 0.7458 0.000 0.000 0.992 0.008
#> SRR1201725 4 0.2868 0.6602 0.000 0.136 0.000 0.864
#> SRR1201724 2 0.4372 0.6625 0.000 0.728 0.268 0.004
#> SRR1201726 3 0.1042 0.7406 0.000 0.020 0.972 0.008
#> SRR1201727 3 0.4790 0.3520 0.000 0.000 0.620 0.380
#> SRR1201731 4 0.3074 0.6154 0.000 0.000 0.152 0.848
#> SRR1201730 3 0.2714 0.6788 0.000 0.112 0.884 0.004
#> SRR1201734 2 0.0188 0.8490 0.000 0.996 0.000 0.004
#> SRR1201733 2 0.1109 0.8423 0.000 0.968 0.028 0.004
#> SRR1201736 2 0.4155 0.6768 0.000 0.756 0.240 0.004
#> SRR1201737 2 0.2334 0.8146 0.000 0.908 0.004 0.088
#> SRR1201739 2 0.1940 0.8221 0.000 0.924 0.000 0.076
#> SRR1201738 2 0.1109 0.8423 0.000 0.968 0.028 0.004
#> SRR1201742 2 0.4053 0.7021 0.000 0.768 0.228 0.004
#> SRR1201743 2 0.3610 0.7185 0.000 0.800 0.000 0.200
#> SRR1201745 2 0.0336 0.8480 0.000 0.992 0.008 0.000
#> SRR1201744 2 0.1109 0.8423 0.000 0.968 0.028 0.004
#> SRR1201749 2 0.1743 0.8315 0.000 0.940 0.056 0.004
#> SRR1201750 2 0.1109 0.8455 0.000 0.968 0.004 0.028
#> SRR1201752 4 0.7527 0.2658 0.000 0.192 0.356 0.452
#> SRR1201751 3 0.3208 0.6404 0.000 0.148 0.848 0.004
#> SRR1201754 2 0.3764 0.7094 0.000 0.784 0.000 0.216
#> SRR1201753 2 0.1661 0.8355 0.000 0.944 0.052 0.004
#> SRR1201758 3 0.0336 0.7458 0.000 0.000 0.992 0.008
#> SRR1201759 3 0.1022 0.7478 0.000 0.000 0.968 0.032
#> SRR1201760 3 0.3257 0.6358 0.000 0.152 0.844 0.004
#> SRR1201761 3 0.5414 0.3060 0.000 0.020 0.604 0.376
#> SRR1201763 4 0.1302 0.6645 0.000 0.000 0.044 0.956
#> SRR1201762 3 0.1211 0.7474 0.000 0.000 0.960 0.040
#> SRR1201764 3 0.1004 0.7375 0.000 0.024 0.972 0.004
#> SRR1201766 2 0.1004 0.8436 0.000 0.972 0.024 0.004
#> SRR1201768 2 0.0188 0.8490 0.000 0.996 0.000 0.004
#> SRR1201769 2 0.0188 0.8490 0.000 0.996 0.000 0.004
#> SRR1201767 2 0.0000 0.8490 0.000 1.000 0.000 0.000
#> SRR1201770 2 0.0469 0.8488 0.000 0.988 0.000 0.012
#> SRR1201771 2 0.0000 0.8490 0.000 1.000 0.000 0.000
#> SRR1201772 2 0.0188 0.8490 0.000 0.996 0.000 0.004
#> SRR1201773 2 0.0000 0.8490 0.000 1.000 0.000 0.000
#> SRR1201774 2 0.0188 0.8490 0.000 0.996 0.000 0.004
#> SRR1201786 2 0.0000 0.8490 0.000 1.000 0.000 0.000
#> SRR1201784 2 0.0188 0.8492 0.000 0.996 0.000 0.004
#> SRR1201785 2 0.0000 0.8490 0.000 1.000 0.000 0.000
#> SRR1201778 2 0.1209 0.8413 0.000 0.964 0.032 0.004
#> SRR1201779 2 0.0000 0.8490 0.000 1.000 0.000 0.000
#> SRR1201781 2 0.0000 0.8490 0.000 1.000 0.000 0.000
#> SRR1201780 2 0.0000 0.8490 0.000 1.000 0.000 0.000
#> SRR1201783 2 0.0188 0.8492 0.000 0.996 0.000 0.004
#> SRR1201782 2 0.0000 0.8490 0.000 1.000 0.000 0.000
#> SRR1201798 2 0.0817 0.8447 0.000 0.976 0.000 0.024
#> SRR1201797 2 0.0707 0.8460 0.000 0.980 0.000 0.020
#> SRR1201796 2 0.0817 0.8447 0.000 0.976 0.000 0.024
#> SRR1201795 2 0.0707 0.8460 0.000 0.980 0.000 0.020
#> SRR1201799 2 0.1302 0.8384 0.000 0.956 0.000 0.044
#> SRR1201794 2 0.0707 0.8460 0.000 0.980 0.000 0.020
#> SRR1201793 2 0.1302 0.8384 0.000 0.956 0.000 0.044
#> SRR1201792 2 0.0707 0.8460 0.000 0.980 0.000 0.020
#> SRR1201791 2 0.1004 0.8436 0.000 0.972 0.024 0.004
#> SRR1201807 2 0.0336 0.8487 0.000 0.992 0.000 0.008
#> SRR1201808 2 0.0469 0.8480 0.000 0.988 0.000 0.012
#> SRR1201803 2 0.0469 0.8480 0.000 0.988 0.000 0.012
#> SRR1201804 2 0.0336 0.8487 0.000 0.992 0.000 0.008
#> SRR1201805 2 0.0469 0.8480 0.000 0.988 0.000 0.012
#> SRR1201806 2 0.0336 0.8487 0.000 0.992 0.000 0.008
#> SRR1201801 2 0.0469 0.8480 0.000 0.988 0.000 0.012
#> SRR1201802 2 0.0336 0.8487 0.000 0.992 0.000 0.008
#> SRR1201800 2 0.1004 0.8436 0.000 0.972 0.024 0.004
#> SRR1201814 2 0.0707 0.8474 0.000 0.980 0.000 0.020
#> SRR1201816 2 0.0707 0.8474 0.000 0.980 0.000 0.020
#> SRR1201815 2 0.0592 0.8480 0.000 0.984 0.000 0.016
#> SRR1201819 2 0.0817 0.8464 0.000 0.976 0.000 0.024
#> SRR1201820 2 0.0707 0.8468 0.000 0.980 0.000 0.020
#> SRR1201813 2 0.1004 0.8436 0.000 0.972 0.024 0.004
#> SRR1201817 2 0.0592 0.8480 0.000 0.984 0.000 0.016
#> SRR1201818 2 0.0592 0.8480 0.000 0.984 0.000 0.016
#> SRR1201825 3 0.2530 0.6904 0.000 0.100 0.896 0.004
#> SRR1201827 4 0.0672 0.6756 0.000 0.008 0.008 0.984
#> SRR1201828 4 0.0804 0.6753 0.000 0.008 0.012 0.980
#> SRR1201826 3 0.4819 0.3493 0.000 0.344 0.652 0.004
#> SRR1201829 4 0.0804 0.6765 0.000 0.012 0.008 0.980
#> SRR1201830 4 0.1042 0.6757 0.000 0.020 0.008 0.972
#> SRR1201831 4 0.0927 0.6763 0.000 0.016 0.008 0.976
#> SRR1201832 4 0.0672 0.6756 0.000 0.008 0.008 0.984
#> SRR1201833 4 0.0804 0.6765 0.000 0.012 0.008 0.980
#> SRR1201865 2 0.7227 0.1310 0.000 0.484 0.368 0.148
#> SRR1201866 2 0.6970 -0.0696 0.000 0.444 0.444 0.112
#> SRR1201867 3 0.6843 0.0655 0.000 0.440 0.460 0.100
#> SRR1201861 2 0.7117 -0.0328 0.000 0.448 0.424 0.128
#> SRR1201862 2 0.7034 0.0358 0.000 0.468 0.412 0.120
#> SRR1201863 2 0.7155 0.1951 0.000 0.504 0.352 0.144
#> SRR1201859 2 0.5151 0.2608 0.000 0.532 0.464 0.004
#> SRR1201864 2 0.6961 0.1377 0.000 0.496 0.388 0.116
#> SRR1201860 2 0.7081 -0.0223 0.000 0.452 0.424 0.124
#> SRR1201873 3 0.1389 0.7481 0.000 0.000 0.952 0.048
#> SRR1201871 3 0.2053 0.7114 0.000 0.072 0.924 0.004
#> SRR1201872 3 0.1716 0.7443 0.000 0.000 0.936 0.064
#> SRR1201980 4 0.5203 0.2932 0.000 0.008 0.416 0.576
#> SRR1201979 3 0.3306 0.6319 0.000 0.156 0.840 0.004
#> SRR1201982 4 0.4259 0.6503 0.000 0.056 0.128 0.816
#> SRR1201981 3 0.4920 0.2789 0.000 0.368 0.628 0.004
#> SRR1201998 4 0.4401 0.5230 0.000 0.272 0.004 0.724
#> SRR1201996 2 0.3945 0.7186 0.000 0.780 0.216 0.004
#> SRR1201997 4 0.4605 0.3866 0.000 0.336 0.000 0.664
#> SRR1202005 2 0.3768 0.7401 0.000 0.808 0.008 0.184
#> SRR1202006 2 0.4624 0.5374 0.000 0.660 0.000 0.340
#> SRR1202088 4 0.7583 0.2829 0.000 0.384 0.196 0.420
#> SRR1202087 3 0.4155 0.5196 0.000 0.240 0.756 0.004
#> SRR1202093 2 0.1557 0.8334 0.000 0.944 0.000 0.056
#> SRR1202092 2 0.2266 0.8136 0.000 0.912 0.084 0.004
#> SRR1202288 2 0.1305 0.8399 0.000 0.960 0.036 0.004
#> SRR1202289 2 0.0592 0.8474 0.000 0.984 0.000 0.016
#> SRR1202299 2 0.0000 0.8490 0.000 1.000 0.000 0.000
#> SRR1202298 2 0.0895 0.8447 0.000 0.976 0.020 0.004
#> SRR1202303 4 0.0707 0.6688 0.000 0.000 0.020 0.980
#> SRR1202372 2 0.0000 0.8490 0.000 1.000 0.000 0.000
#> SRR1202371 2 0.1109 0.8423 0.000 0.968 0.028 0.004
#> SRR1202563 2 0.5163 0.2268 0.000 0.516 0.480 0.004
#> SRR1202565 2 0.4594 0.6131 0.000 0.712 0.008 0.280
#> SRR1202564 2 0.4387 0.6688 0.000 0.752 0.012 0.236
#> SRR1202649 2 0.5119 0.3359 0.000 0.556 0.440 0.004
#> SRR1202650 2 0.4741 0.5754 0.000 0.668 0.328 0.004
#> SRR1202651 2 0.3801 0.7031 0.000 0.780 0.000 0.220
#> SRR1202843 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1202845 2 0.2334 0.8189 0.000 0.908 0.088 0.004
#> SRR1202847 2 0.4925 0.3498 0.000 0.572 0.000 0.428
#> SRR1202846 2 0.4955 0.3076 0.000 0.556 0.000 0.444
#> SRR1202945 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203008 1 0.2915 0.9056 0.908 0.024 0.024 0.044
#> SRR1203010 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203132 4 0.5039 0.3179 0.000 0.004 0.404 0.592
#> SRR1203131 3 0.4372 0.4745 0.000 0.268 0.728 0.004
#> SRR1203133 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203827 2 0.4483 0.6043 0.000 0.712 0.284 0.004
#> SRR1203828 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203842 2 0.1796 0.8358 0.016 0.948 0.032 0.004
#> SRR1203843 1 0.0000 0.9988 1.000 0.000 0.000 0.000
#> SRR1203845 2 0.4661 0.5232 0.000 0.652 0.000 0.348
#> SRR1203844 2 0.1109 0.8423 0.000 0.968 0.028 0.004
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.0854 0.8971 0.000 0.976 0.004 0.012 0.008
#> SRR1201590 2 0.2362 0.8647 0.000 0.900 0.024 0.000 0.076
#> SRR1201593 2 0.1059 0.8972 0.000 0.968 0.008 0.020 0.004
#> SRR1201592 2 0.2775 0.8680 0.000 0.884 0.076 0.004 0.036
#> SRR1201617 2 0.0833 0.8977 0.000 0.976 0.004 0.016 0.004
#> SRR1201616 2 0.2067 0.8814 0.000 0.924 0.044 0.004 0.028
#> SRR1201619 2 0.2450 0.8679 0.000 0.896 0.028 0.076 0.000
#> SRR1201618 2 0.5107 0.6414 0.000 0.688 0.204 0.000 0.108
#> SRR1201620 2 0.3310 0.8211 0.000 0.836 0.136 0.004 0.024
#> SRR1201621 2 0.2331 0.8780 0.000 0.908 0.068 0.016 0.008
#> SRR1201623 3 0.5749 0.1545 0.000 0.004 0.584 0.096 0.316
#> SRR1201622 3 0.4610 -0.0964 0.000 0.012 0.556 0.000 0.432
#> SRR1201624 5 0.3988 0.7676 0.000 0.000 0.196 0.036 0.768
#> SRR1201625 4 0.4980 0.4275 0.000 0.000 0.072 0.676 0.252
#> SRR1201626 5 0.5090 0.4533 0.000 0.004 0.064 0.264 0.668
#> SRR1201627 4 0.2850 0.7067 0.000 0.000 0.036 0.872 0.092
#> SRR1201628 3 0.3876 0.4746 0.000 0.032 0.776 0.000 0.192
#> SRR1201629 3 0.4395 0.5886 0.000 0.032 0.792 0.124 0.052
#> SRR1201630 3 0.4197 0.5420 0.000 0.212 0.752 0.004 0.032
#> SRR1201631 3 0.5211 0.5433 0.000 0.188 0.708 0.088 0.016
#> SRR1201641 3 0.5052 0.5562 0.000 0.144 0.728 0.116 0.012
#> SRR1201640 3 0.3831 0.5570 0.000 0.188 0.784 0.004 0.024
#> SRR1201643 3 0.3715 0.5654 0.000 0.108 0.824 0.004 0.064
#> SRR1201644 3 0.4357 0.5923 0.000 0.096 0.788 0.104 0.012
#> SRR1201661 3 0.4148 0.5423 0.000 0.216 0.752 0.004 0.028
#> SRR1201662 3 0.5349 0.5381 0.000 0.160 0.704 0.120 0.016
#> SRR1201663 5 0.4482 0.5771 0.000 0.000 0.376 0.012 0.612
#> SRR1201664 5 0.5658 0.3870 0.000 0.000 0.408 0.080 0.512
#> SRR1201665 2 0.3527 0.7758 0.000 0.792 0.016 0.000 0.192
#> SRR1201666 2 0.1281 0.8910 0.000 0.956 0.000 0.012 0.032
#> SRR1201667 2 0.1300 0.8910 0.000 0.956 0.000 0.016 0.028
#> SRR1201668 5 0.4700 0.6789 0.000 0.088 0.184 0.000 0.728
#> SRR1201670 5 0.5189 0.6877 0.000 0.032 0.148 0.088 0.732
#> SRR1201669 5 0.5056 0.6925 0.000 0.028 0.148 0.084 0.740
#> SRR1201673 4 0.5192 0.7164 0.000 0.216 0.040 0.704 0.040
#> SRR1201672 4 0.5291 0.7114 0.000 0.220 0.040 0.696 0.044
#> SRR1201671 5 0.6375 0.2427 0.000 0.188 0.316 0.000 0.496
#> SRR1201677 4 0.5149 0.7149 0.000 0.220 0.040 0.704 0.036
#> SRR1201676 4 0.5101 0.7212 0.000 0.204 0.040 0.716 0.040
#> SRR1201675 4 0.5291 0.7118 0.000 0.220 0.040 0.696 0.044
#> SRR1201674 4 0.5232 0.7178 0.000 0.212 0.040 0.704 0.044
#> SRR1201678 4 0.5305 0.6981 0.000 0.232 0.040 0.688 0.040
#> SRR1201682 2 0.4550 0.5935 0.000 0.688 0.036 0.276 0.000
#> SRR1201683 2 0.4503 0.6104 0.000 0.696 0.036 0.268 0.000
#> SRR1201680 2 0.4550 0.5935 0.000 0.688 0.036 0.276 0.000
#> SRR1201681 2 0.4479 0.6179 0.000 0.700 0.036 0.264 0.000
#> SRR1201679 2 0.3574 0.7848 0.000 0.804 0.168 0.000 0.028
#> SRR1201686 5 0.4620 0.7720 0.000 0.004 0.204 0.060 0.732
#> SRR1201687 5 0.4620 0.7720 0.000 0.004 0.204 0.060 0.732
#> SRR1201688 5 0.4588 0.7716 0.000 0.004 0.208 0.056 0.732
#> SRR1201689 5 0.4588 0.7716 0.000 0.004 0.208 0.056 0.732
#> SRR1201685 5 0.3970 0.7485 0.000 0.024 0.224 0.000 0.752
#> SRR1201692 3 0.5385 0.5476 0.000 0.028 0.704 0.184 0.084
#> SRR1201691 3 0.5497 0.5476 0.000 0.032 0.696 0.188 0.084
#> SRR1201690 3 0.3399 0.4920 0.000 0.020 0.812 0.000 0.168
#> SRR1201696 3 0.5352 0.5500 0.000 0.028 0.708 0.180 0.084
#> SRR1201695 3 0.5385 0.5487 0.000 0.028 0.704 0.184 0.084
#> SRR1201694 3 0.5385 0.5476 0.000 0.028 0.704 0.184 0.084
#> SRR1201693 3 0.5385 0.5476 0.000 0.028 0.704 0.184 0.084
#> SRR1201697 3 0.5464 0.5493 0.000 0.032 0.700 0.184 0.084
#> SRR1201698 3 0.5471 0.5688 0.000 0.044 0.708 0.172 0.076
#> SRR1201700 3 0.3790 0.3754 0.000 0.004 0.724 0.000 0.272
#> SRR1201708 3 0.6158 0.2224 0.000 0.000 0.552 0.184 0.264
#> SRR1201707 3 0.6155 0.2373 0.000 0.000 0.556 0.192 0.252
#> SRR1201706 3 0.6161 0.2397 0.000 0.000 0.556 0.196 0.248
#> SRR1201702 3 0.6166 0.2224 0.000 0.000 0.552 0.188 0.260
#> SRR1201705 3 0.6319 0.1615 0.000 0.000 0.520 0.196 0.284
#> SRR1201701 3 0.6286 0.1856 0.000 0.000 0.532 0.204 0.264
#> SRR1201704 3 0.6166 0.2224 0.000 0.000 0.552 0.188 0.260
#> SRR1201703 3 0.6351 0.1538 0.000 0.000 0.516 0.204 0.280
#> SRR1201716 3 0.6077 -0.1357 0.000 0.000 0.480 0.124 0.396
#> SRR1201715 3 0.6105 -0.1279 0.000 0.000 0.480 0.128 0.392
#> SRR1201717 3 0.6077 -0.1357 0.000 0.000 0.480 0.124 0.396
#> SRR1201712 3 0.6047 -0.1362 0.000 0.000 0.480 0.120 0.400
#> SRR1201709 3 0.4291 -0.1784 0.000 0.000 0.536 0.000 0.464
#> SRR1201711 3 0.6085 -0.1567 0.000 0.000 0.472 0.124 0.404
#> SRR1201714 3 0.6032 -0.1068 0.000 0.000 0.492 0.120 0.388
#> SRR1201713 3 0.6114 -0.1584 0.000 0.000 0.472 0.128 0.400
#> SRR1201710 3 0.6081 -0.1423 0.000 0.000 0.476 0.124 0.400
#> SRR1201719 3 0.5301 0.5412 0.000 0.128 0.704 0.156 0.012
#> SRR1201718 3 0.3901 0.5609 0.000 0.196 0.776 0.004 0.024
#> SRR1201721 3 0.5429 0.5108 0.000 0.012 0.676 0.216 0.096
#> SRR1201720 3 0.2966 0.5184 0.000 0.016 0.848 0.000 0.136
#> SRR1201723 5 0.6016 0.5651 0.000 0.000 0.312 0.140 0.548
#> SRR1201722 5 0.4127 0.6903 0.000 0.000 0.312 0.008 0.680
#> SRR1201725 3 0.5683 0.4748 0.000 0.096 0.636 0.256 0.012
#> SRR1201724 3 0.3901 0.5633 0.000 0.196 0.776 0.004 0.024
#> SRR1201726 3 0.3790 0.3786 0.000 0.004 0.724 0.000 0.272
#> SRR1201727 3 0.6638 0.0817 0.000 0.000 0.452 0.272 0.276
#> SRR1201731 3 0.6300 0.3462 0.000 0.032 0.520 0.372 0.076
#> SRR1201730 3 0.3734 0.5527 0.000 0.060 0.812 0.000 0.128
#> SRR1201734 2 0.0671 0.8978 0.000 0.980 0.004 0.016 0.000
#> SRR1201733 2 0.2152 0.8793 0.000 0.920 0.032 0.004 0.044
#> SRR1201736 2 0.4269 0.7010 0.000 0.732 0.036 0.000 0.232
#> SRR1201737 2 0.1673 0.8906 0.000 0.944 0.008 0.016 0.032
#> SRR1201739 2 0.1525 0.8942 0.000 0.948 0.004 0.036 0.012
#> SRR1201738 2 0.2069 0.8735 0.000 0.912 0.012 0.000 0.076
#> SRR1201742 2 0.5502 0.5924 0.000 0.652 0.156 0.000 0.192
#> SRR1201743 2 0.3265 0.8239 0.000 0.844 0.016 0.128 0.012
#> SRR1201745 2 0.2588 0.8626 0.000 0.884 0.100 0.008 0.008
#> SRR1201744 2 0.3950 0.7814 0.000 0.796 0.152 0.004 0.048
#> SRR1201749 2 0.4058 0.7043 0.000 0.740 0.236 0.000 0.024
#> SRR1201750 2 0.1310 0.8960 0.000 0.956 0.020 0.024 0.000
#> SRR1201752 3 0.6150 0.5521 0.000 0.056 0.652 0.188 0.104
#> SRR1201751 3 0.4114 0.4076 0.000 0.024 0.732 0.000 0.244
#> SRR1201754 3 0.5503 0.4597 0.000 0.276 0.644 0.060 0.020
#> SRR1201753 3 0.4449 0.4799 0.000 0.288 0.688 0.004 0.020
#> SRR1201758 5 0.3582 0.7575 0.000 0.008 0.224 0.000 0.768
#> SRR1201759 5 0.4639 0.7454 0.000 0.000 0.236 0.056 0.708
#> SRR1201760 3 0.3351 0.5239 0.000 0.028 0.836 0.004 0.132
#> SRR1201761 3 0.4457 0.5657 0.000 0.020 0.784 0.124 0.072
#> SRR1201763 4 0.3267 0.6898 0.000 0.000 0.044 0.844 0.112
#> SRR1201762 5 0.4503 0.6790 0.000 0.000 0.124 0.120 0.756
#> SRR1201764 3 0.4505 0.4319 0.000 0.020 0.720 0.016 0.244
#> SRR1201766 2 0.1831 0.8750 0.000 0.920 0.004 0.000 0.076
#> SRR1201768 2 0.0898 0.8941 0.000 0.972 0.000 0.008 0.020
#> SRR1201769 2 0.0798 0.8952 0.000 0.976 0.000 0.008 0.016
#> SRR1201767 2 0.0798 0.8952 0.000 0.976 0.000 0.008 0.016
#> SRR1201770 2 0.0912 0.8948 0.000 0.972 0.000 0.012 0.016
#> SRR1201771 2 0.0798 0.8952 0.000 0.976 0.000 0.008 0.016
#> SRR1201772 2 0.0798 0.8952 0.000 0.976 0.000 0.008 0.016
#> SRR1201773 2 0.0798 0.8952 0.000 0.976 0.000 0.008 0.016
#> SRR1201774 2 0.0898 0.8941 0.000 0.972 0.000 0.008 0.020
#> SRR1201786 2 0.0798 0.8952 0.000 0.976 0.000 0.008 0.016
#> SRR1201784 2 0.0798 0.8952 0.000 0.976 0.000 0.008 0.016
#> SRR1201785 2 0.0798 0.8952 0.000 0.976 0.000 0.008 0.016
#> SRR1201778 2 0.2676 0.8575 0.000 0.884 0.036 0.000 0.080
#> SRR1201779 2 0.0798 0.8952 0.000 0.976 0.000 0.008 0.016
#> SRR1201781 2 0.0798 0.8952 0.000 0.976 0.000 0.008 0.016
#> SRR1201780 2 0.0898 0.8941 0.000 0.972 0.000 0.008 0.020
#> SRR1201783 2 0.0798 0.8952 0.000 0.976 0.000 0.008 0.016
#> SRR1201782 2 0.0798 0.8952 0.000 0.976 0.000 0.008 0.016
#> SRR1201798 2 0.0833 0.8978 0.000 0.976 0.004 0.016 0.004
#> SRR1201797 2 0.0833 0.8978 0.000 0.976 0.004 0.016 0.004
#> SRR1201796 2 0.0833 0.8978 0.000 0.976 0.004 0.016 0.004
#> SRR1201795 2 0.0833 0.8978 0.000 0.976 0.004 0.016 0.004
#> SRR1201799 2 0.1026 0.8970 0.000 0.968 0.004 0.024 0.004
#> SRR1201794 2 0.0833 0.8978 0.000 0.976 0.004 0.016 0.004
#> SRR1201793 2 0.1243 0.8968 0.000 0.960 0.004 0.028 0.008
#> SRR1201792 2 0.0833 0.8978 0.000 0.976 0.004 0.016 0.004
#> SRR1201791 2 0.1710 0.8865 0.000 0.940 0.016 0.004 0.040
#> SRR1201807 2 0.2032 0.8861 0.000 0.924 0.052 0.020 0.004
#> SRR1201808 2 0.1960 0.8877 0.000 0.928 0.048 0.020 0.004
#> SRR1201803 2 0.2125 0.8842 0.000 0.920 0.052 0.024 0.004
#> SRR1201804 2 0.1862 0.8888 0.000 0.932 0.048 0.016 0.004
#> SRR1201805 2 0.2053 0.8862 0.000 0.924 0.048 0.024 0.004
#> SRR1201806 2 0.1862 0.8888 0.000 0.932 0.048 0.016 0.004
#> SRR1201801 2 0.1960 0.8877 0.000 0.928 0.048 0.020 0.004
#> SRR1201802 2 0.1787 0.8897 0.000 0.936 0.044 0.016 0.004
#> SRR1201800 2 0.3594 0.7862 0.000 0.804 0.172 0.004 0.020
#> SRR1201814 2 0.2075 0.8864 0.000 0.924 0.040 0.032 0.004
#> SRR1201816 2 0.2075 0.8864 0.000 0.924 0.040 0.032 0.004
#> SRR1201815 2 0.2075 0.8865 0.000 0.924 0.040 0.032 0.004
#> SRR1201819 2 0.1990 0.8875 0.000 0.928 0.040 0.028 0.004
#> SRR1201820 2 0.2075 0.8864 0.000 0.924 0.040 0.032 0.004
#> SRR1201813 2 0.3218 0.8347 0.000 0.844 0.128 0.004 0.024
#> SRR1201817 2 0.2075 0.8864 0.000 0.924 0.040 0.032 0.004
#> SRR1201818 2 0.1990 0.8875 0.000 0.928 0.040 0.028 0.004
#> SRR1201825 3 0.4613 0.1618 0.000 0.020 0.620 0.000 0.360
#> SRR1201827 4 0.3053 0.7443 0.000 0.012 0.128 0.852 0.008
#> SRR1201828 4 0.3018 0.7524 0.000 0.012 0.116 0.860 0.012
#> SRR1201826 3 0.4763 0.5166 0.000 0.104 0.740 0.004 0.152
#> SRR1201829 4 0.3210 0.7405 0.000 0.012 0.132 0.844 0.012
#> SRR1201830 4 0.2886 0.7544 0.000 0.016 0.116 0.864 0.004
#> SRR1201831 4 0.3163 0.7423 0.000 0.012 0.128 0.848 0.012
#> SRR1201832 4 0.2957 0.7501 0.000 0.012 0.120 0.860 0.008
#> SRR1201833 4 0.3018 0.7524 0.000 0.012 0.116 0.860 0.012
#> SRR1201865 3 0.5022 0.5599 0.000 0.060 0.752 0.052 0.136
#> SRR1201866 3 0.4905 0.5526 0.000 0.056 0.756 0.044 0.144
#> SRR1201867 3 0.4791 0.5551 0.000 0.056 0.764 0.040 0.140
#> SRR1201861 3 0.4777 0.5589 0.000 0.056 0.768 0.044 0.132
#> SRR1201862 3 0.4748 0.5591 0.000 0.056 0.768 0.040 0.136
#> SRR1201863 3 0.4195 0.5775 0.000 0.056 0.812 0.036 0.096
#> SRR1201859 3 0.5354 0.4170 0.000 0.128 0.680 0.004 0.188
#> SRR1201864 3 0.4688 0.5639 0.000 0.056 0.776 0.044 0.124
#> SRR1201860 3 0.5055 0.5468 0.000 0.056 0.744 0.048 0.152
#> SRR1201873 3 0.4769 0.3561 0.000 0.000 0.688 0.056 0.256
#> SRR1201871 3 0.3885 0.3628 0.000 0.008 0.724 0.000 0.268
#> SRR1201872 3 0.4847 0.3759 0.000 0.000 0.692 0.068 0.240
#> SRR1201980 3 0.4826 0.5798 0.000 0.032 0.756 0.152 0.060
#> SRR1201979 3 0.3694 0.4920 0.000 0.032 0.796 0.000 0.172
#> SRR1201982 3 0.4687 0.5767 0.000 0.052 0.756 0.168 0.024
#> SRR1201981 3 0.4006 0.5677 0.000 0.112 0.804 0.004 0.080
#> SRR1201998 3 0.5128 0.5448 0.000 0.100 0.716 0.172 0.012
#> SRR1201996 3 0.4116 0.5454 0.000 0.212 0.756 0.004 0.028
#> SRR1201997 3 0.5169 0.5437 0.000 0.116 0.716 0.156 0.012
#> SRR1202005 3 0.4684 0.5325 0.000 0.232 0.720 0.028 0.020
#> SRR1202006 3 0.5528 0.5193 0.000 0.204 0.680 0.096 0.020
#> SRR1202088 2 0.5598 0.6016 0.000 0.692 0.032 0.100 0.176
#> SRR1202087 5 0.6042 0.1625 0.000 0.396 0.120 0.000 0.484
#> SRR1202093 2 0.1800 0.8783 0.000 0.932 0.000 0.020 0.048
#> SRR1202092 2 0.3093 0.8030 0.000 0.824 0.008 0.000 0.168
#> SRR1202288 2 0.2813 0.8551 0.000 0.880 0.032 0.004 0.084
#> SRR1202289 2 0.0566 0.8983 0.000 0.984 0.004 0.012 0.000
#> SRR1202299 2 0.1547 0.8930 0.000 0.948 0.032 0.016 0.004
#> SRR1202298 2 0.2331 0.8799 0.000 0.908 0.064 0.004 0.024
#> SRR1202303 4 0.2676 0.7140 0.000 0.000 0.036 0.884 0.080
#> SRR1202372 2 0.1173 0.8960 0.000 0.964 0.020 0.012 0.004
#> SRR1202371 2 0.3248 0.8378 0.000 0.856 0.088 0.004 0.052
#> SRR1202563 3 0.5513 0.4478 0.000 0.180 0.652 0.000 0.168
#> SRR1202565 3 0.4974 0.5500 0.000 0.200 0.720 0.064 0.016
#> SRR1202564 3 0.4850 0.5545 0.000 0.200 0.728 0.056 0.016
#> SRR1202649 3 0.6087 0.3042 0.000 0.244 0.568 0.000 0.188
#> SRR1202650 3 0.4457 0.5254 0.000 0.208 0.740 0.004 0.048
#> SRR1202651 3 0.5460 0.4708 0.000 0.268 0.652 0.060 0.020
#> SRR1202843 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1202845 3 0.4304 0.5292 0.000 0.232 0.736 0.008 0.024
#> SRR1202847 3 0.5258 0.5415 0.000 0.176 0.704 0.108 0.012
#> SRR1202846 3 0.5288 0.5419 0.000 0.164 0.704 0.120 0.012
#> SRR1202945 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.3120 0.8769 0.888 0.032 0.032 0.016 0.032
#> SRR1203010 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.4564 0.5867 0.000 0.036 0.780 0.132 0.052
#> SRR1203131 3 0.3465 0.5417 0.000 0.052 0.840 0.004 0.104
#> SRR1203133 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203827 2 0.6271 0.1904 0.004 0.480 0.132 0.000 0.384
#> SRR1203828 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203842 2 0.5134 0.7203 0.012 0.728 0.156 0.004 0.100
#> SRR1203843 1 0.0000 0.9984 1.000 0.000 0.000 0.000 0.000
#> SRR1203845 3 0.5594 0.5040 0.000 0.220 0.668 0.092 0.020
#> SRR1203844 3 0.4491 0.5083 0.000 0.260 0.708 0.008 0.024
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 2 0.1078 0.8632 0.000 0.964 0.008 0.012 0.000 0.016
#> SRR1201590 2 0.2845 0.8541 0.000 0.872 0.064 0.004 0.008 0.052
#> SRR1201593 2 0.2122 0.8648 0.000 0.912 0.040 0.008 0.000 0.040
#> SRR1201592 2 0.3465 0.8299 0.000 0.820 0.112 0.004 0.004 0.060
#> SRR1201617 2 0.2240 0.8648 0.000 0.908 0.032 0.016 0.000 0.044
#> SRR1201616 2 0.3503 0.8285 0.000 0.820 0.096 0.004 0.004 0.076
#> SRR1201619 2 0.4107 0.7764 0.000 0.760 0.016 0.168 0.000 0.056
#> SRR1201618 2 0.6615 0.5132 0.000 0.544 0.184 0.000 0.132 0.140
#> SRR1201620 2 0.3989 0.8143 0.000 0.776 0.096 0.000 0.008 0.120
#> SRR1201621 2 0.3181 0.8503 0.000 0.844 0.060 0.004 0.004 0.088
#> SRR1201623 5 0.6902 0.4094 0.000 0.012 0.276 0.136 0.492 0.084
#> SRR1201622 5 0.5449 0.3885 0.000 0.012 0.272 0.000 0.592 0.124
#> SRR1201624 5 0.3243 0.1442 0.000 0.004 0.020 0.012 0.828 0.136
#> SRR1201625 4 0.4176 0.4866 0.000 0.000 0.020 0.768 0.136 0.076
#> SRR1201626 6 0.5408 0.8827 0.000 0.012 0.004 0.088 0.316 0.580
#> SRR1201627 4 0.2758 0.6604 0.000 0.000 0.012 0.872 0.036 0.080
#> SRR1201628 3 0.4254 0.5365 0.000 0.024 0.704 0.000 0.252 0.020
#> SRR1201629 3 0.3576 0.6379 0.000 0.032 0.836 0.036 0.084 0.012
#> SRR1201630 3 0.2908 0.6551 0.000 0.092 0.864 0.004 0.012 0.028
#> SRR1201631 3 0.2752 0.6498 0.000 0.108 0.856 0.000 0.000 0.036
#> SRR1201641 3 0.2973 0.6597 0.000 0.084 0.860 0.016 0.000 0.040
#> SRR1201640 3 0.3050 0.6542 0.000 0.092 0.852 0.000 0.012 0.044
#> SRR1201643 3 0.3329 0.6557 0.000 0.072 0.844 0.000 0.052 0.032
#> SRR1201644 3 0.2479 0.6629 0.000 0.064 0.896 0.012 0.008 0.020
#> SRR1201661 3 0.3125 0.6530 0.000 0.092 0.852 0.004 0.012 0.040
#> SRR1201662 3 0.3671 0.6377 0.000 0.092 0.816 0.024 0.000 0.068
#> SRR1201663 5 0.3089 0.4744 0.000 0.000 0.188 0.004 0.800 0.008
#> SRR1201664 5 0.4226 0.4934 0.000 0.000 0.172 0.076 0.744 0.008
#> SRR1201665 2 0.4061 0.7812 0.000 0.796 0.036 0.004 0.060 0.104
#> SRR1201666 2 0.1693 0.8543 0.000 0.932 0.004 0.020 0.000 0.044
#> SRR1201667 2 0.1578 0.8544 0.000 0.936 0.004 0.012 0.000 0.048
#> SRR1201668 5 0.3692 0.1235 0.000 0.092 0.028 0.000 0.816 0.064
#> SRR1201670 5 0.3923 0.1683 0.000 0.044 0.016 0.068 0.820 0.052
#> SRR1201669 5 0.3923 0.1683 0.000 0.044 0.016 0.068 0.820 0.052
#> SRR1201673 4 0.3800 0.6902 0.000 0.200 0.020 0.764 0.012 0.004
#> SRR1201672 4 0.3855 0.6843 0.000 0.204 0.016 0.760 0.012 0.008
#> SRR1201671 5 0.6274 0.2225 0.000 0.120 0.272 0.000 0.540 0.068
#> SRR1201677 4 0.3739 0.6976 0.000 0.192 0.020 0.772 0.012 0.004
#> SRR1201676 4 0.3610 0.7063 0.000 0.176 0.020 0.788 0.012 0.004
#> SRR1201675 4 0.3913 0.6723 0.000 0.212 0.016 0.752 0.012 0.008
#> SRR1201674 4 0.3817 0.6997 0.000 0.188 0.020 0.772 0.012 0.008
#> SRR1201678 4 0.3913 0.6720 0.000 0.212 0.016 0.752 0.012 0.008
#> SRR1201682 2 0.4305 0.5890 0.000 0.656 0.012 0.312 0.000 0.020
#> SRR1201683 2 0.4253 0.6106 0.000 0.668 0.012 0.300 0.000 0.020
#> SRR1201680 2 0.4241 0.5850 0.000 0.656 0.012 0.316 0.000 0.016
#> SRR1201681 2 0.4311 0.6117 0.000 0.668 0.012 0.296 0.000 0.024
#> SRR1201679 2 0.5252 0.7107 0.000 0.664 0.152 0.000 0.024 0.160
#> SRR1201686 5 0.2209 0.3436 0.000 0.000 0.024 0.072 0.900 0.004
#> SRR1201687 5 0.2209 0.3436 0.000 0.000 0.024 0.072 0.900 0.004
#> SRR1201688 5 0.2209 0.3436 0.000 0.000 0.024 0.072 0.900 0.004
#> SRR1201689 5 0.2209 0.3436 0.000 0.000 0.024 0.072 0.900 0.004
#> SRR1201685 5 0.2477 0.3386 0.000 0.024 0.048 0.000 0.896 0.032
#> SRR1201692 3 0.4702 0.5925 0.000 0.028 0.744 0.124 0.096 0.008
#> SRR1201691 3 0.4787 0.5897 0.000 0.028 0.736 0.128 0.100 0.008
#> SRR1201690 3 0.4017 0.5982 0.000 0.032 0.760 0.000 0.184 0.024
#> SRR1201696 3 0.4489 0.5992 0.000 0.028 0.764 0.092 0.108 0.008
#> SRR1201695 3 0.4669 0.5880 0.000 0.028 0.748 0.108 0.108 0.008
#> SRR1201694 3 0.4616 0.5965 0.000 0.028 0.752 0.120 0.092 0.008
#> SRR1201693 3 0.4489 0.6021 0.000 0.028 0.764 0.092 0.108 0.008
#> SRR1201697 3 0.4621 0.5926 0.000 0.024 0.748 0.128 0.092 0.008
#> SRR1201698 3 0.4394 0.6221 0.000 0.040 0.776 0.108 0.068 0.008
#> SRR1201700 3 0.3992 0.3667 0.000 0.000 0.624 0.000 0.364 0.012
#> SRR1201708 3 0.6047 0.1674 0.000 0.000 0.504 0.164 0.312 0.020
#> SRR1201707 3 0.6121 0.1848 0.000 0.000 0.508 0.172 0.296 0.024
#> SRR1201706 3 0.6144 0.1647 0.000 0.000 0.500 0.172 0.304 0.024
#> SRR1201702 3 0.6115 0.1293 0.000 0.000 0.488 0.172 0.320 0.020
#> SRR1201705 3 0.6126 0.0925 0.000 0.000 0.472 0.184 0.328 0.016
#> SRR1201701 3 0.6203 0.1010 0.000 0.000 0.472 0.188 0.320 0.020
#> SRR1201704 3 0.6082 0.1492 0.000 0.000 0.496 0.168 0.316 0.020
#> SRR1201703 3 0.6211 0.0846 0.000 0.000 0.468 0.188 0.324 0.020
#> SRR1201716 5 0.5694 0.4514 0.000 0.000 0.300 0.168 0.528 0.004
#> SRR1201715 5 0.5804 0.4265 0.000 0.000 0.312 0.164 0.516 0.008
#> SRR1201717 5 0.5680 0.4458 0.000 0.000 0.304 0.164 0.528 0.004
#> SRR1201712 5 0.5641 0.4529 0.000 0.000 0.300 0.160 0.536 0.004
#> SRR1201709 5 0.4170 0.4511 0.000 0.000 0.308 0.000 0.660 0.032
#> SRR1201711 5 0.5680 0.4476 0.000 0.000 0.304 0.164 0.528 0.004
#> SRR1201714 5 0.5666 0.4415 0.000 0.000 0.308 0.160 0.528 0.004
#> SRR1201713 5 0.5692 0.4413 0.000 0.000 0.308 0.164 0.524 0.004
#> SRR1201710 5 0.5572 0.4602 0.000 0.000 0.296 0.152 0.548 0.004
#> SRR1201719 3 0.3673 0.6423 0.000 0.076 0.820 0.032 0.000 0.072
#> SRR1201718 3 0.3130 0.6508 0.000 0.084 0.848 0.004 0.004 0.060
#> SRR1201721 3 0.5180 0.5984 0.000 0.020 0.728 0.096 0.096 0.060
#> SRR1201720 3 0.3578 0.6222 0.000 0.020 0.808 0.004 0.144 0.024
#> SRR1201723 5 0.5038 0.4078 0.000 0.000 0.112 0.132 0.708 0.048
#> SRR1201722 5 0.2669 0.4318 0.000 0.000 0.108 0.004 0.864 0.024
#> SRR1201725 3 0.4199 0.6290 0.000 0.068 0.784 0.052 0.000 0.096
#> SRR1201724 3 0.3618 0.6446 0.000 0.080 0.816 0.008 0.004 0.092
#> SRR1201726 3 0.4734 0.5277 0.000 0.008 0.680 0.004 0.240 0.068
#> SRR1201727 3 0.6936 0.1084 0.000 0.000 0.448 0.224 0.248 0.080
#> SRR1201731 3 0.5663 0.4631 0.000 0.000 0.608 0.240 0.036 0.116
#> SRR1201730 3 0.4172 0.6422 0.000 0.044 0.796 0.008 0.088 0.064
#> SRR1201734 2 0.2313 0.8653 0.000 0.904 0.036 0.016 0.000 0.044
#> SRR1201733 2 0.2970 0.8471 0.000 0.860 0.072 0.004 0.004 0.060
#> SRR1201736 2 0.4871 0.7168 0.000 0.728 0.040 0.004 0.136 0.092
#> SRR1201737 2 0.1636 0.8537 0.000 0.936 0.000 0.036 0.004 0.024
#> SRR1201739 2 0.1838 0.8627 0.000 0.928 0.012 0.020 0.000 0.040
#> SRR1201738 2 0.2692 0.8520 0.000 0.880 0.036 0.004 0.008 0.072
#> SRR1201742 2 0.6541 0.5216 0.000 0.556 0.128 0.000 0.168 0.148
#> SRR1201743 2 0.3543 0.7293 0.000 0.756 0.004 0.224 0.000 0.016
#> SRR1201745 2 0.3405 0.8444 0.000 0.828 0.076 0.004 0.004 0.088
#> SRR1201744 2 0.4622 0.7669 0.000 0.720 0.132 0.000 0.012 0.136
#> SRR1201749 2 0.5537 0.5749 0.000 0.600 0.244 0.000 0.016 0.140
#> SRR1201750 2 0.2849 0.8577 0.000 0.876 0.036 0.044 0.000 0.044
#> SRR1201752 3 0.6905 0.4861 0.000 0.056 0.568 0.180 0.128 0.068
#> SRR1201751 3 0.5165 0.3887 0.000 0.020 0.588 0.000 0.332 0.060
#> SRR1201754 3 0.5149 0.5624 0.000 0.172 0.688 0.028 0.004 0.108
#> SRR1201753 3 0.4352 0.6137 0.000 0.124 0.752 0.000 0.016 0.108
#> SRR1201758 5 0.1845 0.3810 0.000 0.000 0.052 0.000 0.920 0.028
#> SRR1201759 5 0.2335 0.3761 0.000 0.000 0.044 0.028 0.904 0.024
#> SRR1201760 3 0.3973 0.5980 0.000 0.020 0.768 0.004 0.180 0.028
#> SRR1201761 3 0.4080 0.6008 0.000 0.016 0.784 0.048 0.140 0.012
#> SRR1201763 4 0.2485 0.6734 0.000 0.000 0.012 0.892 0.040 0.056
#> SRR1201762 6 0.5273 0.8738 0.000 0.004 0.020 0.048 0.384 0.544
#> SRR1201764 3 0.5593 0.5417 0.000 0.036 0.648 0.004 0.148 0.164
#> SRR1201766 2 0.1862 0.8561 0.000 0.928 0.008 0.004 0.016 0.044
#> SRR1201768 2 0.0767 0.8614 0.000 0.976 0.000 0.012 0.004 0.008
#> SRR1201769 2 0.0653 0.8614 0.000 0.980 0.000 0.012 0.004 0.004
#> SRR1201767 2 0.0767 0.8604 0.000 0.976 0.000 0.012 0.004 0.008
#> SRR1201770 2 0.0767 0.8604 0.000 0.976 0.000 0.012 0.004 0.008
#> SRR1201771 2 0.0653 0.8614 0.000 0.980 0.000 0.012 0.004 0.004
#> SRR1201772 2 0.0653 0.8614 0.000 0.980 0.000 0.012 0.004 0.004
#> SRR1201773 2 0.0870 0.8603 0.000 0.972 0.000 0.012 0.004 0.012
#> SRR1201774 2 0.0653 0.8614 0.000 0.980 0.000 0.012 0.004 0.004
#> SRR1201786 2 0.0551 0.8615 0.000 0.984 0.000 0.008 0.004 0.004
#> SRR1201784 2 0.0551 0.8615 0.000 0.984 0.000 0.008 0.004 0.004
#> SRR1201785 2 0.0551 0.8615 0.000 0.984 0.000 0.008 0.004 0.004
#> SRR1201778 2 0.2890 0.8460 0.000 0.864 0.020 0.004 0.016 0.096
#> SRR1201779 2 0.0653 0.8611 0.000 0.980 0.000 0.012 0.004 0.004
#> SRR1201781 2 0.0551 0.8615 0.000 0.984 0.000 0.008 0.004 0.004
#> SRR1201780 2 0.0665 0.8613 0.000 0.980 0.000 0.008 0.004 0.008
#> SRR1201783 2 0.0653 0.8611 0.000 0.980 0.000 0.012 0.004 0.004
#> SRR1201782 2 0.0665 0.8613 0.000 0.980 0.000 0.008 0.004 0.008
#> SRR1201798 2 0.1511 0.8631 0.000 0.944 0.012 0.012 0.000 0.032
#> SRR1201797 2 0.1528 0.8642 0.000 0.944 0.016 0.012 0.000 0.028
#> SRR1201796 2 0.1605 0.8640 0.000 0.940 0.016 0.012 0.000 0.032
#> SRR1201795 2 0.1528 0.8642 0.000 0.944 0.016 0.012 0.000 0.028
#> SRR1201799 2 0.1434 0.8640 0.000 0.948 0.012 0.012 0.000 0.028
#> SRR1201794 2 0.1605 0.8639 0.000 0.940 0.016 0.012 0.000 0.032
#> SRR1201793 2 0.1511 0.8638 0.000 0.944 0.012 0.012 0.000 0.032
#> SRR1201792 2 0.1434 0.8635 0.000 0.948 0.012 0.012 0.000 0.028
#> SRR1201791 2 0.2201 0.8597 0.000 0.904 0.036 0.004 0.000 0.056
#> SRR1201807 2 0.3401 0.8394 0.000 0.832 0.048 0.012 0.004 0.104
#> SRR1201808 2 0.3492 0.8381 0.000 0.828 0.048 0.016 0.004 0.104
#> SRR1201803 2 0.3735 0.8347 0.000 0.816 0.048 0.028 0.004 0.104
#> SRR1201804 2 0.3306 0.8421 0.000 0.840 0.048 0.012 0.004 0.096
#> SRR1201805 2 0.3577 0.8367 0.000 0.824 0.048 0.020 0.004 0.104
#> SRR1201806 2 0.3302 0.8407 0.000 0.836 0.048 0.008 0.004 0.104
#> SRR1201801 2 0.3445 0.8403 0.000 0.832 0.048 0.016 0.004 0.100
#> SRR1201802 2 0.3142 0.8447 0.000 0.848 0.044 0.008 0.004 0.096
#> SRR1201800 2 0.4707 0.7290 0.000 0.696 0.148 0.000 0.004 0.152
#> SRR1201814 2 0.3956 0.8273 0.000 0.804 0.036 0.056 0.004 0.100
#> SRR1201816 2 0.3968 0.8274 0.000 0.804 0.036 0.060 0.004 0.096
#> SRR1201815 2 0.3956 0.8273 0.000 0.804 0.036 0.056 0.004 0.100
#> SRR1201819 2 0.3956 0.8273 0.000 0.804 0.036 0.056 0.004 0.100
#> SRR1201820 2 0.3956 0.8273 0.000 0.804 0.036 0.056 0.004 0.100
#> SRR1201813 2 0.3974 0.8039 0.000 0.772 0.108 0.000 0.004 0.116
#> SRR1201817 2 0.3956 0.8273 0.000 0.804 0.036 0.056 0.004 0.100
#> SRR1201818 2 0.4002 0.8256 0.000 0.800 0.036 0.056 0.004 0.104
#> SRR1201825 5 0.5515 0.1077 0.000 0.016 0.404 0.000 0.496 0.084
#> SRR1201827 4 0.2095 0.7472 0.000 0.012 0.052 0.916 0.004 0.016
#> SRR1201828 4 0.2118 0.7473 0.000 0.012 0.048 0.916 0.004 0.020
#> SRR1201826 3 0.5934 0.5193 0.000 0.060 0.624 0.004 0.172 0.140
#> SRR1201829 4 0.2307 0.7390 0.000 0.012 0.060 0.904 0.004 0.020
#> SRR1201830 4 0.2145 0.7493 0.000 0.016 0.044 0.916 0.004 0.020
#> SRR1201831 4 0.2339 0.7459 0.000 0.016 0.056 0.904 0.004 0.020
#> SRR1201832 4 0.2183 0.7460 0.000 0.012 0.052 0.912 0.004 0.020
#> SRR1201833 4 0.2339 0.7459 0.000 0.016 0.056 0.904 0.004 0.020
#> SRR1201865 3 0.7698 0.2020 0.000 0.048 0.444 0.120 0.252 0.136
#> SRR1201866 3 0.7574 0.1966 0.000 0.048 0.448 0.100 0.272 0.132
#> SRR1201867 3 0.7529 0.2143 0.000 0.048 0.456 0.096 0.268 0.132
#> SRR1201861 3 0.7624 0.2186 0.000 0.048 0.452 0.112 0.256 0.132
#> SRR1201862 3 0.7612 0.1797 0.000 0.048 0.440 0.100 0.276 0.136
#> SRR1201863 3 0.7518 0.2552 0.000 0.048 0.472 0.104 0.244 0.132
#> SRR1201859 3 0.6928 0.0907 0.000 0.088 0.416 0.000 0.332 0.164
#> SRR1201864 3 0.7638 0.2287 0.000 0.048 0.456 0.112 0.244 0.140
#> SRR1201860 3 0.7686 0.1792 0.000 0.048 0.436 0.112 0.268 0.136
#> SRR1201873 3 0.4981 0.1194 0.000 0.000 0.516 0.032 0.432 0.020
#> SRR1201871 3 0.5119 0.0842 0.000 0.004 0.476 0.000 0.452 0.068
#> SRR1201872 3 0.5176 0.1625 0.000 0.000 0.528 0.048 0.404 0.020
#> SRR1201980 3 0.3707 0.6386 0.000 0.036 0.828 0.052 0.076 0.008
#> SRR1201979 3 0.4271 0.5762 0.000 0.028 0.732 0.000 0.208 0.032
#> SRR1201982 3 0.4144 0.6488 0.000 0.056 0.804 0.044 0.016 0.080
#> SRR1201981 3 0.3556 0.6566 0.000 0.068 0.836 0.004 0.052 0.040
#> SRR1201998 3 0.3889 0.6418 0.000 0.072 0.808 0.048 0.000 0.072
#> SRR1201996 3 0.3338 0.6464 0.000 0.096 0.832 0.004 0.004 0.064
#> SRR1201997 3 0.3673 0.6420 0.000 0.076 0.820 0.032 0.000 0.072
#> SRR1202005 3 0.3382 0.6372 0.000 0.112 0.820 0.000 0.004 0.064
#> SRR1202006 3 0.3701 0.6292 0.000 0.112 0.804 0.012 0.000 0.072
#> SRR1202088 2 0.4870 0.6598 0.000 0.740 0.008 0.108 0.096 0.048
#> SRR1202087 5 0.5065 -0.1484 0.000 0.400 0.012 0.000 0.536 0.052
#> SRR1202093 2 0.2568 0.8216 0.000 0.888 0.000 0.060 0.016 0.036
#> SRR1202092 2 0.3086 0.8227 0.000 0.852 0.004 0.004 0.068 0.072
#> SRR1202288 2 0.3023 0.8462 0.000 0.860 0.040 0.004 0.012 0.084
#> SRR1202289 2 0.1346 0.8671 0.000 0.952 0.024 0.008 0.000 0.016
#> SRR1202299 2 0.2885 0.8512 0.000 0.868 0.044 0.008 0.004 0.076
#> SRR1202298 2 0.3537 0.8303 0.000 0.808 0.072 0.000 0.004 0.116
#> SRR1202303 4 0.2147 0.6875 0.000 0.000 0.012 0.912 0.032 0.044
#> SRR1202372 2 0.2689 0.8557 0.000 0.884 0.040 0.012 0.004 0.060
#> SRR1202371 2 0.3624 0.8401 0.000 0.812 0.060 0.000 0.016 0.112
#> SRR1202563 3 0.6484 0.4355 0.000 0.128 0.564 0.000 0.164 0.144
#> SRR1202565 3 0.4630 0.6168 0.000 0.116 0.748 0.032 0.004 0.100
#> SRR1202564 3 0.4445 0.6183 0.000 0.120 0.756 0.020 0.004 0.100
#> SRR1202649 3 0.6597 0.4237 0.000 0.108 0.556 0.004 0.188 0.144
#> SRR1202650 3 0.5173 0.5853 0.000 0.112 0.700 0.000 0.060 0.128
#> SRR1202651 3 0.5054 0.5677 0.000 0.164 0.696 0.024 0.004 0.112
#> SRR1202843 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202845 3 0.3268 0.6459 0.000 0.100 0.836 0.004 0.004 0.056
#> SRR1202847 3 0.3885 0.6303 0.000 0.108 0.796 0.020 0.000 0.076
#> SRR1202846 3 0.3832 0.6320 0.000 0.108 0.800 0.020 0.000 0.072
#> SRR1202945 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.2932 0.8704 0.888 0.028 0.020 0.020 0.012 0.032
#> SRR1203010 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.4206 0.6472 0.000 0.040 0.808 0.052 0.044 0.056
#> SRR1203131 3 0.3757 0.6467 0.000 0.048 0.820 0.004 0.088 0.040
#> SRR1203133 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203827 5 0.7669 -0.2255 0.000 0.304 0.136 0.008 0.324 0.228
#> SRR1203828 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203842 2 0.6759 0.3574 0.000 0.516 0.196 0.008 0.068 0.212
#> SRR1203843 1 0.0000 0.9983 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203845 3 0.4264 0.5893 0.000 0.148 0.752 0.012 0.000 0.088
#> SRR1203844 3 0.3876 0.6238 0.000 0.120 0.788 0.004 0.004 0.084
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["ATC", "hclust"]
# you can also extract it by
# res = res_list["ATC:hclust"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'ATC' method.
#> Subgroups are detected by 'hclust' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 2.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1 1.000 1.000 0.37606 0.625 0.625
#> 3 3 1 1.000 1.000 0.02783 0.990 0.983
#> 4 4 1 0.996 0.998 0.01032 0.995 0.992
#> 5 5 1 0.989 1.000 0.00319 1.000 1.000
#> 6 6 1 0.986 1.000 0.01323 0.995 0.991
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 2
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0 1 0 1
#> SRR1201590 2 0 1 0 1
#> SRR1201593 2 0 1 0 1
#> SRR1201592 2 0 1 0 1
#> SRR1201617 2 0 1 0 1
#> SRR1201616 2 0 1 0 1
#> SRR1201619 2 0 1 0 1
#> SRR1201618 2 0 1 0 1
#> SRR1201620 2 0 1 0 1
#> SRR1201621 2 0 1 0 1
#> SRR1201623 2 0 1 0 1
#> SRR1201622 2 0 1 0 1
#> SRR1201624 2 0 1 0 1
#> SRR1201625 2 0 1 0 1
#> SRR1201626 2 0 1 0 1
#> SRR1201627 2 0 1 0 1
#> SRR1201628 2 0 1 0 1
#> SRR1201629 2 0 1 0 1
#> SRR1201630 2 0 1 0 1
#> SRR1201631 2 0 1 0 1
#> SRR1201641 2 0 1 0 1
#> SRR1201640 2 0 1 0 1
#> SRR1201643 2 0 1 0 1
#> SRR1201644 2 0 1 0 1
#> SRR1201661 2 0 1 0 1
#> SRR1201662 2 0 1 0 1
#> SRR1201663 2 0 1 0 1
#> SRR1201664 2 0 1 0 1
#> SRR1201665 2 0 1 0 1
#> SRR1201666 2 0 1 0 1
#> SRR1201667 2 0 1 0 1
#> SRR1201668 2 0 1 0 1
#> SRR1201670 2 0 1 0 1
#> SRR1201669 2 0 1 0 1
#> SRR1201673 2 0 1 0 1
#> SRR1201672 2 0 1 0 1
#> SRR1201671 2 0 1 0 1
#> SRR1201677 2 0 1 0 1
#> SRR1201676 2 0 1 0 1
#> SRR1201675 2 0 1 0 1
#> SRR1201674 2 0 1 0 1
#> SRR1201678 2 0 1 0 1
#> SRR1201682 2 0 1 0 1
#> SRR1201683 2 0 1 0 1
#> SRR1201680 2 0 1 0 1
#> SRR1201681 2 0 1 0 1
#> SRR1201679 2 0 1 0 1
#> SRR1201686 2 0 1 0 1
#> SRR1201687 2 0 1 0 1
#> SRR1201688 2 0 1 0 1
#> SRR1201689 2 0 1 0 1
#> SRR1201685 2 0 1 0 1
#> SRR1201692 2 0 1 0 1
#> SRR1201691 2 0 1 0 1
#> SRR1201690 2 0 1 0 1
#> SRR1201696 2 0 1 0 1
#> SRR1201695 2 0 1 0 1
#> SRR1201694 2 0 1 0 1
#> SRR1201693 2 0 1 0 1
#> SRR1201697 2 0 1 0 1
#> SRR1201698 2 0 1 0 1
#> SRR1201700 2 0 1 0 1
#> SRR1201708 2 0 1 0 1
#> SRR1201707 2 0 1 0 1
#> SRR1201706 2 0 1 0 1
#> SRR1201702 2 0 1 0 1
#> SRR1201705 2 0 1 0 1
#> SRR1201701 2 0 1 0 1
#> SRR1201704 2 0 1 0 1
#> SRR1201703 2 0 1 0 1
#> SRR1201716 2 0 1 0 1
#> SRR1201715 2 0 1 0 1
#> SRR1201717 2 0 1 0 1
#> SRR1201712 2 0 1 0 1
#> SRR1201709 2 0 1 0 1
#> SRR1201711 2 0 1 0 1
#> SRR1201714 2 0 1 0 1
#> SRR1201713 2 0 1 0 1
#> SRR1201710 2 0 1 0 1
#> SRR1201719 2 0 1 0 1
#> SRR1201718 2 0 1 0 1
#> SRR1201721 2 0 1 0 1
#> SRR1201720 2 0 1 0 1
#> SRR1201723 2 0 1 0 1
#> SRR1201722 2 0 1 0 1
#> SRR1201725 2 0 1 0 1
#> SRR1201724 2 0 1 0 1
#> SRR1201726 2 0 1 0 1
#> SRR1201727 2 0 1 0 1
#> SRR1201731 2 0 1 0 1
#> SRR1201730 2 0 1 0 1
#> SRR1201734 2 0 1 0 1
#> SRR1201733 2 0 1 0 1
#> SRR1201736 2 0 1 0 1
#> SRR1201737 2 0 1 0 1
#> SRR1201739 2 0 1 0 1
#> SRR1201738 2 0 1 0 1
#> SRR1201742 2 0 1 0 1
#> SRR1201743 2 0 1 0 1
#> SRR1201745 2 0 1 0 1
#> SRR1201744 2 0 1 0 1
#> SRR1201749 2 0 1 0 1
#> SRR1201750 2 0 1 0 1
#> SRR1201752 2 0 1 0 1
#> SRR1201751 2 0 1 0 1
#> SRR1201754 2 0 1 0 1
#> SRR1201753 2 0 1 0 1
#> SRR1201758 2 0 1 0 1
#> SRR1201759 2 0 1 0 1
#> SRR1201760 2 0 1 0 1
#> SRR1201761 2 0 1 0 1
#> SRR1201763 2 0 1 0 1
#> SRR1201762 2 0 1 0 1
#> SRR1201764 2 0 1 0 1
#> SRR1201766 2 0 1 0 1
#> SRR1201768 2 0 1 0 1
#> SRR1201769 2 0 1 0 1
#> SRR1201767 2 0 1 0 1
#> SRR1201770 2 0 1 0 1
#> SRR1201771 2 0 1 0 1
#> SRR1201772 2 0 1 0 1
#> SRR1201773 2 0 1 0 1
#> SRR1201774 2 0 1 0 1
#> SRR1201786 2 0 1 0 1
#> SRR1201784 2 0 1 0 1
#> SRR1201785 2 0 1 0 1
#> SRR1201778 2 0 1 0 1
#> SRR1201779 2 0 1 0 1
#> SRR1201781 2 0 1 0 1
#> SRR1201780 2 0 1 0 1
#> SRR1201783 2 0 1 0 1
#> SRR1201782 2 0 1 0 1
#> SRR1201798 2 0 1 0 1
#> SRR1201797 2 0 1 0 1
#> SRR1201796 2 0 1 0 1
#> SRR1201795 2 0 1 0 1
#> SRR1201799 2 0 1 0 1
#> SRR1201794 2 0 1 0 1
#> SRR1201793 2 0 1 0 1
#> SRR1201792 2 0 1 0 1
#> SRR1201791 2 0 1 0 1
#> SRR1201807 2 0 1 0 1
#> SRR1201808 2 0 1 0 1
#> SRR1201803 2 0 1 0 1
#> SRR1201804 2 0 1 0 1
#> SRR1201805 2 0 1 0 1
#> SRR1201806 2 0 1 0 1
#> SRR1201801 2 0 1 0 1
#> SRR1201802 2 0 1 0 1
#> SRR1201800 2 0 1 0 1
#> SRR1201814 2 0 1 0 1
#> SRR1201816 2 0 1 0 1
#> SRR1201815 2 0 1 0 1
#> SRR1201819 2 0 1 0 1
#> SRR1201820 2 0 1 0 1
#> SRR1201813 2 0 1 0 1
#> SRR1201817 2 0 1 0 1
#> SRR1201818 2 0 1 0 1
#> SRR1201825 2 0 1 0 1
#> SRR1201827 2 0 1 0 1
#> SRR1201828 2 0 1 0 1
#> SRR1201826 2 0 1 0 1
#> SRR1201829 2 0 1 0 1
#> SRR1201830 2 0 1 0 1
#> SRR1201831 2 0 1 0 1
#> SRR1201832 2 0 1 0 1
#> SRR1201833 2 0 1 0 1
#> SRR1201865 2 0 1 0 1
#> SRR1201866 2 0 1 0 1
#> SRR1201867 2 0 1 0 1
#> SRR1201861 2 0 1 0 1
#> SRR1201862 2 0 1 0 1
#> SRR1201863 2 0 1 0 1
#> SRR1201859 2 0 1 0 1
#> SRR1201864 2 0 1 0 1
#> SRR1201860 2 0 1 0 1
#> SRR1201873 2 0 1 0 1
#> SRR1201871 2 0 1 0 1
#> SRR1201872 2 0 1 0 1
#> SRR1201980 2 0 1 0 1
#> SRR1201979 2 0 1 0 1
#> SRR1201982 2 0 1 0 1
#> SRR1201981 2 0 1 0 1
#> SRR1201998 2 0 1 0 1
#> SRR1201996 2 0 1 0 1
#> SRR1201997 2 0 1 0 1
#> SRR1202005 2 0 1 0 1
#> SRR1202006 2 0 1 0 1
#> SRR1202088 2 0 1 0 1
#> SRR1202087 2 0 1 0 1
#> SRR1202093 2 0 1 0 1
#> SRR1202092 2 0 1 0 1
#> SRR1202288 2 0 1 0 1
#> SRR1202289 2 0 1 0 1
#> SRR1202299 2 0 1 0 1
#> SRR1202298 2 0 1 0 1
#> SRR1202303 2 0 1 0 1
#> SRR1202372 2 0 1 0 1
#> SRR1202371 2 0 1 0 1
#> SRR1202563 2 0 1 0 1
#> SRR1202565 2 0 1 0 1
#> SRR1202564 2 0 1 0 1
#> SRR1202649 2 0 1 0 1
#> SRR1202650 2 0 1 0 1
#> SRR1202651 2 0 1 0 1
#> SRR1202843 1 0 1 1 0
#> SRR1202844 1 0 1 1 0
#> SRR1202845 2 0 1 0 1
#> SRR1202847 2 0 1 0 1
#> SRR1202846 2 0 1 0 1
#> SRR1202945 1 0 1 1 0
#> SRR1202949 1 0 1 1 0
#> SRR1202977 1 0 1 1 0
#> SRR1202978 1 0 1 1 0
#> SRR1202979 1 0 1 1 0
#> SRR1202990 1 0 1 1 0
#> SRR1202999 1 0 1 1 0
#> SRR1203005 1 0 1 1 0
#> SRR1203006 1 0 1 1 0
#> SRR1203007 1 0 1 1 0
#> SRR1203009 1 0 1 1 0
#> SRR1203008 1 0 1 1 0
#> SRR1203010 1 0 1 1 0
#> SRR1203011 1 0 1 1 0
#> SRR1203025 1 0 1 1 0
#> SRR1203026 1 0 1 1 0
#> SRR1203027 1 0 1 1 0
#> SRR1203061 1 0 1 1 0
#> SRR1203089 1 0 1 1 0
#> SRR1203125 1 0 1 1 0
#> SRR1203128 1 0 1 1 0
#> SRR1203129 1 0 1 1 0
#> SRR1203130 1 0 1 1 0
#> SRR1203132 2 0 1 0 1
#> SRR1203131 2 0 1 0 1
#> SRR1203133 1 0 1 1 0
#> SRR1203138 1 0 1 1 0
#> SRR1203760 1 0 1 1 0
#> SRR1203761 1 0 1 1 0
#> SRR1203770 1 0 1 1 0
#> SRR1203771 1 0 1 1 0
#> SRR1203772 1 0 1 1 0
#> SRR1203773 1 0 1 1 0
#> SRR1203774 1 0 1 1 0
#> SRR1203775 1 0 1 1 0
#> SRR1203800 1 0 1 1 0
#> SRR1203801 1 0 1 1 0
#> SRR1203802 1 0 1 1 0
#> SRR1203803 1 0 1 1 0
#> SRR1203804 1 0 1 1 0
#> SRR1203805 1 0 1 1 0
#> SRR1203806 1 0 1 1 0
#> SRR1203807 1 0 1 1 0
#> SRR1203808 1 0 1 1 0
#> SRR1203811 1 0 1 1 0
#> SRR1203812 1 0 1 1 0
#> SRR1203813 1 0 1 1 0
#> SRR1203814 1 0 1 1 0
#> SRR1203815 1 0 1 1 0
#> SRR1203816 1 0 1 1 0
#> SRR1203817 1 0 1 1 0
#> SRR1203818 1 0 1 1 0
#> SRR1203819 1 0 1 1 0
#> SRR1203822 1 0 1 1 0
#> SRR1203823 1 0 1 1 0
#> SRR1203824 1 0 1 1 0
#> SRR1203825 1 0 1 1 0
#> SRR1203826 1 0 1 1 0
#> SRR1203827 2 0 1 0 1
#> SRR1203828 1 0 1 1 0
#> SRR1203829 1 0 1 1 0
#> SRR1203830 1 0 1 1 0
#> SRR1203831 1 0 1 1 0
#> SRR1203832 1 0 1 1 0
#> SRR1203833 1 0 1 1 0
#> SRR1203834 1 0 1 1 0
#> SRR1203835 1 0 1 1 0
#> SRR1203836 1 0 1 1 0
#> SRR1203837 1 0 1 1 0
#> SRR1203838 1 0 1 1 0
#> SRR1203839 1 0 1 1 0
#> SRR1203842 2 0 1 0 1
#> SRR1203843 1 0 1 1 0
#> SRR1203845 2 0 1 0 1
#> SRR1203844 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0 1 0 1 0
#> SRR1201590 2 0 1 0 1 0
#> SRR1201593 2 0 1 0 1 0
#> SRR1201592 2 0 1 0 1 0
#> SRR1201617 2 0 1 0 1 0
#> SRR1201616 2 0 1 0 1 0
#> SRR1201619 2 0 1 0 1 0
#> SRR1201618 2 0 1 0 1 0
#> SRR1201620 2 0 1 0 1 0
#> SRR1201621 2 0 1 0 1 0
#> SRR1201623 2 0 1 0 1 0
#> SRR1201622 2 0 1 0 1 0
#> SRR1201624 2 0 1 0 1 0
#> SRR1201625 2 0 1 0 1 0
#> SRR1201626 2 0 1 0 1 0
#> SRR1201627 2 0 1 0 1 0
#> SRR1201628 2 0 1 0 1 0
#> SRR1201629 2 0 1 0 1 0
#> SRR1201630 2 0 1 0 1 0
#> SRR1201631 2 0 1 0 1 0
#> SRR1201641 2 0 1 0 1 0
#> SRR1201640 2 0 1 0 1 0
#> SRR1201643 2 0 1 0 1 0
#> SRR1201644 2 0 1 0 1 0
#> SRR1201661 2 0 1 0 1 0
#> SRR1201662 2 0 1 0 1 0
#> SRR1201663 2 0 1 0 1 0
#> SRR1201664 2 0 1 0 1 0
#> SRR1201665 2 0 1 0 1 0
#> SRR1201666 2 0 1 0 1 0
#> SRR1201667 2 0 1 0 1 0
#> SRR1201668 2 0 1 0 1 0
#> SRR1201670 2 0 1 0 1 0
#> SRR1201669 2 0 1 0 1 0
#> SRR1201673 2 0 1 0 1 0
#> SRR1201672 2 0 1 0 1 0
#> SRR1201671 2 0 1 0 1 0
#> SRR1201677 2 0 1 0 1 0
#> SRR1201676 2 0 1 0 1 0
#> SRR1201675 2 0 1 0 1 0
#> SRR1201674 2 0 1 0 1 0
#> SRR1201678 2 0 1 0 1 0
#> SRR1201682 2 0 1 0 1 0
#> SRR1201683 2 0 1 0 1 0
#> SRR1201680 2 0 1 0 1 0
#> SRR1201681 2 0 1 0 1 0
#> SRR1201679 2 0 1 0 1 0
#> SRR1201686 2 0 1 0 1 0
#> SRR1201687 2 0 1 0 1 0
#> SRR1201688 2 0 1 0 1 0
#> SRR1201689 2 0 1 0 1 0
#> SRR1201685 2 0 1 0 1 0
#> SRR1201692 2 0 1 0 1 0
#> SRR1201691 2 0 1 0 1 0
#> SRR1201690 2 0 1 0 1 0
#> SRR1201696 2 0 1 0 1 0
#> SRR1201695 2 0 1 0 1 0
#> SRR1201694 2 0 1 0 1 0
#> SRR1201693 2 0 1 0 1 0
#> SRR1201697 2 0 1 0 1 0
#> SRR1201698 2 0 1 0 1 0
#> SRR1201700 2 0 1 0 1 0
#> SRR1201708 2 0 1 0 1 0
#> SRR1201707 2 0 1 0 1 0
#> SRR1201706 2 0 1 0 1 0
#> SRR1201702 2 0 1 0 1 0
#> SRR1201705 2 0 1 0 1 0
#> SRR1201701 2 0 1 0 1 0
#> SRR1201704 2 0 1 0 1 0
#> SRR1201703 2 0 1 0 1 0
#> SRR1201716 2 0 1 0 1 0
#> SRR1201715 2 0 1 0 1 0
#> SRR1201717 2 0 1 0 1 0
#> SRR1201712 2 0 1 0 1 0
#> SRR1201709 2 0 1 0 1 0
#> SRR1201711 2 0 1 0 1 0
#> SRR1201714 2 0 1 0 1 0
#> SRR1201713 2 0 1 0 1 0
#> SRR1201710 2 0 1 0 1 0
#> SRR1201719 2 0 1 0 1 0
#> SRR1201718 2 0 1 0 1 0
#> SRR1201721 2 0 1 0 1 0
#> SRR1201720 2 0 1 0 1 0
#> SRR1201723 2 0 1 0 1 0
#> SRR1201722 2 0 1 0 1 0
#> SRR1201725 2 0 1 0 1 0
#> SRR1201724 2 0 1 0 1 0
#> SRR1201726 2 0 1 0 1 0
#> SRR1201727 2 0 1 0 1 0
#> SRR1201731 2 0 1 0 1 0
#> SRR1201730 2 0 1 0 1 0
#> SRR1201734 2 0 1 0 1 0
#> SRR1201733 2 0 1 0 1 0
#> SRR1201736 2 0 1 0 1 0
#> SRR1201737 2 0 1 0 1 0
#> SRR1201739 2 0 1 0 1 0
#> SRR1201738 2 0 1 0 1 0
#> SRR1201742 2 0 1 0 1 0
#> SRR1201743 2 0 1 0 1 0
#> SRR1201745 2 0 1 0 1 0
#> SRR1201744 2 0 1 0 1 0
#> SRR1201749 2 0 1 0 1 0
#> SRR1201750 2 0 1 0 1 0
#> SRR1201752 2 0 1 0 1 0
#> SRR1201751 2 0 1 0 1 0
#> SRR1201754 2 0 1 0 1 0
#> SRR1201753 2 0 1 0 1 0
#> SRR1201758 2 0 1 0 1 0
#> SRR1201759 2 0 1 0 1 0
#> SRR1201760 2 0 1 0 1 0
#> SRR1201761 2 0 1 0 1 0
#> SRR1201763 2 0 1 0 1 0
#> SRR1201762 2 0 1 0 1 0
#> SRR1201764 2 0 1 0 1 0
#> SRR1201766 2 0 1 0 1 0
#> SRR1201768 2 0 1 0 1 0
#> SRR1201769 2 0 1 0 1 0
#> SRR1201767 2 0 1 0 1 0
#> SRR1201770 2 0 1 0 1 0
#> SRR1201771 2 0 1 0 1 0
#> SRR1201772 2 0 1 0 1 0
#> SRR1201773 2 0 1 0 1 0
#> SRR1201774 2 0 1 0 1 0
#> SRR1201786 2 0 1 0 1 0
#> SRR1201784 2 0 1 0 1 0
#> SRR1201785 2 0 1 0 1 0
#> SRR1201778 2 0 1 0 1 0
#> SRR1201779 2 0 1 0 1 0
#> SRR1201781 2 0 1 0 1 0
#> SRR1201780 2 0 1 0 1 0
#> SRR1201783 2 0 1 0 1 0
#> SRR1201782 2 0 1 0 1 0
#> SRR1201798 2 0 1 0 1 0
#> SRR1201797 2 0 1 0 1 0
#> SRR1201796 2 0 1 0 1 0
#> SRR1201795 2 0 1 0 1 0
#> SRR1201799 2 0 1 0 1 0
#> SRR1201794 2 0 1 0 1 0
#> SRR1201793 2 0 1 0 1 0
#> SRR1201792 2 0 1 0 1 0
#> SRR1201791 2 0 1 0 1 0
#> SRR1201807 2 0 1 0 1 0
#> SRR1201808 2 0 1 0 1 0
#> SRR1201803 2 0 1 0 1 0
#> SRR1201804 2 0 1 0 1 0
#> SRR1201805 2 0 1 0 1 0
#> SRR1201806 2 0 1 0 1 0
#> SRR1201801 2 0 1 0 1 0
#> SRR1201802 2 0 1 0 1 0
#> SRR1201800 2 0 1 0 1 0
#> SRR1201814 2 0 1 0 1 0
#> SRR1201816 2 0 1 0 1 0
#> SRR1201815 2 0 1 0 1 0
#> SRR1201819 2 0 1 0 1 0
#> SRR1201820 2 0 1 0 1 0
#> SRR1201813 2 0 1 0 1 0
#> SRR1201817 2 0 1 0 1 0
#> SRR1201818 2 0 1 0 1 0
#> SRR1201825 2 0 1 0 1 0
#> SRR1201827 2 0 1 0 1 0
#> SRR1201828 2 0 1 0 1 0
#> SRR1201826 2 0 1 0 1 0
#> SRR1201829 2 0 1 0 1 0
#> SRR1201830 2 0 1 0 1 0
#> SRR1201831 2 0 1 0 1 0
#> SRR1201832 2 0 1 0 1 0
#> SRR1201833 2 0 1 0 1 0
#> SRR1201865 2 0 1 0 1 0
#> SRR1201866 2 0 1 0 1 0
#> SRR1201867 2 0 1 0 1 0
#> SRR1201861 2 0 1 0 1 0
#> SRR1201862 2 0 1 0 1 0
#> SRR1201863 2 0 1 0 1 0
#> SRR1201859 2 0 1 0 1 0
#> SRR1201864 2 0 1 0 1 0
#> SRR1201860 2 0 1 0 1 0
#> SRR1201873 2 0 1 0 1 0
#> SRR1201871 2 0 1 0 1 0
#> SRR1201872 2 0 1 0 1 0
#> SRR1201980 2 0 1 0 1 0
#> SRR1201979 2 0 1 0 1 0
#> SRR1201982 2 0 1 0 1 0
#> SRR1201981 2 0 1 0 1 0
#> SRR1201998 2 0 1 0 1 0
#> SRR1201996 2 0 1 0 1 0
#> SRR1201997 2 0 1 0 1 0
#> SRR1202005 2 0 1 0 1 0
#> SRR1202006 2 0 1 0 1 0
#> SRR1202088 2 0 1 0 1 0
#> SRR1202087 2 0 1 0 1 0
#> SRR1202093 2 0 1 0 1 0
#> SRR1202092 2 0 1 0 1 0
#> SRR1202288 2 0 1 0 1 0
#> SRR1202289 2 0 1 0 1 0
#> SRR1202299 2 0 1 0 1 0
#> SRR1202298 2 0 1 0 1 0
#> SRR1202303 2 0 1 0 1 0
#> SRR1202372 2 0 1 0 1 0
#> SRR1202371 2 0 1 0 1 0
#> SRR1202563 2 0 1 0 1 0
#> SRR1202565 2 0 1 0 1 0
#> SRR1202564 2 0 1 0 1 0
#> SRR1202649 2 0 1 0 1 0
#> SRR1202650 2 0 1 0 1 0
#> SRR1202651 2 0 1 0 1 0
#> SRR1202843 1 0 1 1 0 0
#> SRR1202844 1 0 1 1 0 0
#> SRR1202845 2 0 1 0 1 0
#> SRR1202847 2 0 1 0 1 0
#> SRR1202846 2 0 1 0 1 0
#> SRR1202945 1 0 1 1 0 0
#> SRR1202949 1 0 1 1 0 0
#> SRR1202977 1 0 1 1 0 0
#> SRR1202978 1 0 1 1 0 0
#> SRR1202979 1 0 1 1 0 0
#> SRR1202990 1 0 1 1 0 0
#> SRR1202999 1 0 1 1 0 0
#> SRR1203005 1 0 1 1 0 0
#> SRR1203006 1 0 1 1 0 0
#> SRR1203007 1 0 1 1 0 0
#> SRR1203009 1 0 1 1 0 0
#> SRR1203008 1 0 1 1 0 0
#> SRR1203010 1 0 1 1 0 0
#> SRR1203011 1 0 1 1 0 0
#> SRR1203025 1 0 1 1 0 0
#> SRR1203026 1 0 1 1 0 0
#> SRR1203027 1 0 1 1 0 0
#> SRR1203061 1 0 1 1 0 0
#> SRR1203089 1 0 1 1 0 0
#> SRR1203125 1 0 1 1 0 0
#> SRR1203128 1 0 1 1 0 0
#> SRR1203129 1 0 1 1 0 0
#> SRR1203130 1 0 1 1 0 0
#> SRR1203132 2 0 1 0 1 0
#> SRR1203131 2 0 1 0 1 0
#> SRR1203133 1 0 1 1 0 0
#> SRR1203138 1 0 1 1 0 0
#> SRR1203760 1 0 1 1 0 0
#> SRR1203761 1 0 1 1 0 0
#> SRR1203770 1 0 1 1 0 0
#> SRR1203771 1 0 1 1 0 0
#> SRR1203772 1 0 1 1 0 0
#> SRR1203773 1 0 1 1 0 0
#> SRR1203774 1 0 1 1 0 0
#> SRR1203775 1 0 1 1 0 0
#> SRR1203800 1 0 1 1 0 0
#> SRR1203801 1 0 1 1 0 0
#> SRR1203802 1 0 1 1 0 0
#> SRR1203803 1 0 1 1 0 0
#> SRR1203804 1 0 1 1 0 0
#> SRR1203805 1 0 1 1 0 0
#> SRR1203806 1 0 1 1 0 0
#> SRR1203807 1 0 1 1 0 0
#> SRR1203808 1 0 1 1 0 0
#> SRR1203811 1 0 1 1 0 0
#> SRR1203812 1 0 1 1 0 0
#> SRR1203813 1 0 1 1 0 0
#> SRR1203814 1 0 1 1 0 0
#> SRR1203815 1 0 1 1 0 0
#> SRR1203816 1 0 1 1 0 0
#> SRR1203817 1 0 1 1 0 0
#> SRR1203818 1 0 1 1 0 0
#> SRR1203819 1 0 1 1 0 0
#> SRR1203822 1 0 1 1 0 0
#> SRR1203823 1 0 1 1 0 0
#> SRR1203824 1 0 1 1 0 0
#> SRR1203825 1 0 1 1 0 0
#> SRR1203826 1 0 1 1 0 0
#> SRR1203827 3 0 1 0 0 1
#> SRR1203828 1 0 1 1 0 0
#> SRR1203829 1 0 1 1 0 0
#> SRR1203830 1 0 1 1 0 0
#> SRR1203831 1 0 1 1 0 0
#> SRR1203832 1 0 1 1 0 0
#> SRR1203833 1 0 1 1 0 0
#> SRR1203834 1 0 1 1 0 0
#> SRR1203835 1 0 1 1 0 0
#> SRR1203836 1 0 1 1 0 0
#> SRR1203837 1 0 1 1 0 0
#> SRR1203838 1 0 1 1 0 0
#> SRR1203839 1 0 1 1 0 0
#> SRR1203842 3 0 1 0 0 1
#> SRR1203843 1 0 1 1 0 0
#> SRR1203845 2 0 1 0 1 0
#> SRR1203844 2 0 1 0 1 0
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201590 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201593 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201592 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201617 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201616 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201619 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201618 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201620 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201621 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201623 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201622 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201624 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201625 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201626 4 0.394 0.000 0 0.236 0.000 0.764
#> SRR1201627 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201628 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201629 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201630 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201631 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201641 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201640 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201643 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201644 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201661 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201662 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201663 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201664 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201665 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201666 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201667 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201668 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201670 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201669 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201673 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201672 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201671 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201677 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201676 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201675 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201674 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201678 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201682 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201683 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201680 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201681 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201679 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201686 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201687 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201688 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201689 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201685 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201692 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201691 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201690 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201696 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201695 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201694 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201693 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201697 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201698 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201700 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201708 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201707 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201706 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201702 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201705 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201701 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201704 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201703 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201716 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201715 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201717 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201712 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201709 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201711 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201714 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201713 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201710 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201719 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201718 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201721 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201720 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201723 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201722 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201725 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201724 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201726 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201727 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201731 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201730 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201734 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201733 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201736 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201737 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201739 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201738 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201742 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201743 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201745 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201744 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201749 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201750 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201752 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201751 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201754 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201753 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201758 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201759 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201760 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201761 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201763 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201762 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201764 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201766 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201768 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201769 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201767 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201770 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201771 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201772 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201773 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201774 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201786 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201784 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201785 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201778 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201779 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201781 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201780 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201783 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201782 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201798 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201797 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201796 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201795 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201799 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201794 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201793 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201792 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201791 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201807 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201808 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201803 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201804 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201805 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201806 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201801 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201802 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201800 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201814 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201816 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201815 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201819 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201820 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201813 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201817 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201818 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201825 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201827 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201828 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201826 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201829 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201830 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201831 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201832 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201833 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201865 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201866 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201867 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201861 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201862 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201863 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201859 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201864 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201860 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201873 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201871 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201872 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201980 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201979 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201982 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201981 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201998 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201996 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1201997 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202005 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202006 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202088 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202087 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202093 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202092 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202288 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202289 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202299 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202298 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202303 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202372 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202371 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202563 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202565 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202564 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202649 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202650 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202651 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202843 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1202844 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1202845 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202847 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202846 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1202945 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1202949 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1202977 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1202978 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1202979 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1202990 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1202999 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203005 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203006 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203007 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203009 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203008 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203010 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203011 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203025 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203026 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203027 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203061 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203089 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203125 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203128 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203129 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203130 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203132 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1203131 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1203133 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203138 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203760 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203761 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203770 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203771 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203772 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203773 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203774 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203775 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203800 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203801 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203802 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203803 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203804 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203805 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203806 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203807 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203808 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203811 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203812 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203813 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203814 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203815 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203816 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203817 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203818 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203819 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203822 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203823 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203824 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203825 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203826 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203827 3 0.394 0.912 0 0.000 0.764 0.236
#> SRR1203828 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203829 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203830 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203831 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203832 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203833 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203834 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203835 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203836 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203837 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203838 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203839 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203842 3 0.000 0.912 0 0.000 1.000 0.000
#> SRR1203843 1 0.000 1.000 1 0.000 0.000 0.000
#> SRR1203845 2 0.000 1.000 0 1.000 0.000 0.000
#> SRR1203844 2 0.000 1.000 0 1.000 0.000 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0 1 0 1 0 0 0
#> SRR1201590 2 0 1 0 1 0 0 0
#> SRR1201593 2 0 1 0 1 0 0 0
#> SRR1201592 2 0 1 0 1 0 0 0
#> SRR1201617 2 0 1 0 1 0 0 0
#> SRR1201616 2 0 1 0 1 0 0 0
#> SRR1201619 2 0 1 0 1 0 0 0
#> SRR1201618 2 0 1 0 1 0 0 0
#> SRR1201620 2 0 1 0 1 0 0 0
#> SRR1201621 2 0 1 0 1 0 0 0
#> SRR1201623 2 0 1 0 1 0 0 0
#> SRR1201622 2 0 1 0 1 0 0 0
#> SRR1201624 2 0 1 0 1 0 0 0
#> SRR1201625 2 0 1 0 1 0 0 0
#> SRR1201626 4 0 0 0 0 0 1 0
#> SRR1201627 2 0 1 0 1 0 0 0
#> SRR1201628 2 0 1 0 1 0 0 0
#> SRR1201629 2 0 1 0 1 0 0 0
#> SRR1201630 2 0 1 0 1 0 0 0
#> SRR1201631 2 0 1 0 1 0 0 0
#> SRR1201641 2 0 1 0 1 0 0 0
#> SRR1201640 2 0 1 0 1 0 0 0
#> SRR1201643 2 0 1 0 1 0 0 0
#> SRR1201644 2 0 1 0 1 0 0 0
#> SRR1201661 2 0 1 0 1 0 0 0
#> SRR1201662 2 0 1 0 1 0 0 0
#> SRR1201663 2 0 1 0 1 0 0 0
#> SRR1201664 2 0 1 0 1 0 0 0
#> SRR1201665 2 0 1 0 1 0 0 0
#> SRR1201666 2 0 1 0 1 0 0 0
#> SRR1201667 2 0 1 0 1 0 0 0
#> SRR1201668 2 0 1 0 1 0 0 0
#> SRR1201670 2 0 1 0 1 0 0 0
#> SRR1201669 2 0 1 0 1 0 0 0
#> SRR1201673 2 0 1 0 1 0 0 0
#> SRR1201672 2 0 1 0 1 0 0 0
#> SRR1201671 2 0 1 0 1 0 0 0
#> SRR1201677 2 0 1 0 1 0 0 0
#> SRR1201676 2 0 1 0 1 0 0 0
#> SRR1201675 2 0 1 0 1 0 0 0
#> SRR1201674 2 0 1 0 1 0 0 0
#> SRR1201678 2 0 1 0 1 0 0 0
#> SRR1201682 2 0 1 0 1 0 0 0
#> SRR1201683 2 0 1 0 1 0 0 0
#> SRR1201680 2 0 1 0 1 0 0 0
#> SRR1201681 2 0 1 0 1 0 0 0
#> SRR1201679 2 0 1 0 1 0 0 0
#> SRR1201686 2 0 1 0 1 0 0 0
#> SRR1201687 2 0 1 0 1 0 0 0
#> SRR1201688 2 0 1 0 1 0 0 0
#> SRR1201689 2 0 1 0 1 0 0 0
#> SRR1201685 2 0 1 0 1 0 0 0
#> SRR1201692 2 0 1 0 1 0 0 0
#> SRR1201691 2 0 1 0 1 0 0 0
#> SRR1201690 2 0 1 0 1 0 0 0
#> SRR1201696 2 0 1 0 1 0 0 0
#> SRR1201695 2 0 1 0 1 0 0 0
#> SRR1201694 2 0 1 0 1 0 0 0
#> SRR1201693 2 0 1 0 1 0 0 0
#> SRR1201697 2 0 1 0 1 0 0 0
#> SRR1201698 2 0 1 0 1 0 0 0
#> SRR1201700 2 0 1 0 1 0 0 0
#> SRR1201708 2 0 1 0 1 0 0 0
#> SRR1201707 2 0 1 0 1 0 0 0
#> SRR1201706 2 0 1 0 1 0 0 0
#> SRR1201702 2 0 1 0 1 0 0 0
#> SRR1201705 2 0 1 0 1 0 0 0
#> SRR1201701 2 0 1 0 1 0 0 0
#> SRR1201704 2 0 1 0 1 0 0 0
#> SRR1201703 2 0 1 0 1 0 0 0
#> SRR1201716 2 0 1 0 1 0 0 0
#> SRR1201715 2 0 1 0 1 0 0 0
#> SRR1201717 2 0 1 0 1 0 0 0
#> SRR1201712 2 0 1 0 1 0 0 0
#> SRR1201709 2 0 1 0 1 0 0 0
#> SRR1201711 2 0 1 0 1 0 0 0
#> SRR1201714 2 0 1 0 1 0 0 0
#> SRR1201713 2 0 1 0 1 0 0 0
#> SRR1201710 2 0 1 0 1 0 0 0
#> SRR1201719 2 0 1 0 1 0 0 0
#> SRR1201718 2 0 1 0 1 0 0 0
#> SRR1201721 2 0 1 0 1 0 0 0
#> SRR1201720 2 0 1 0 1 0 0 0
#> SRR1201723 2 0 1 0 1 0 0 0
#> SRR1201722 2 0 1 0 1 0 0 0
#> SRR1201725 2 0 1 0 1 0 0 0
#> SRR1201724 2 0 1 0 1 0 0 0
#> SRR1201726 2 0 1 0 1 0 0 0
#> SRR1201727 2 0 1 0 1 0 0 0
#> SRR1201731 2 0 1 0 1 0 0 0
#> SRR1201730 2 0 1 0 1 0 0 0
#> SRR1201734 2 0 1 0 1 0 0 0
#> SRR1201733 2 0 1 0 1 0 0 0
#> SRR1201736 2 0 1 0 1 0 0 0
#> SRR1201737 2 0 1 0 1 0 0 0
#> SRR1201739 2 0 1 0 1 0 0 0
#> SRR1201738 2 0 1 0 1 0 0 0
#> SRR1201742 2 0 1 0 1 0 0 0
#> SRR1201743 2 0 1 0 1 0 0 0
#> SRR1201745 2 0 1 0 1 0 0 0
#> SRR1201744 2 0 1 0 1 0 0 0
#> SRR1201749 2 0 1 0 1 0 0 0
#> SRR1201750 2 0 1 0 1 0 0 0
#> SRR1201752 2 0 1 0 1 0 0 0
#> SRR1201751 2 0 1 0 1 0 0 0
#> SRR1201754 2 0 1 0 1 0 0 0
#> SRR1201753 2 0 1 0 1 0 0 0
#> SRR1201758 2 0 1 0 1 0 0 0
#> SRR1201759 2 0 1 0 1 0 0 0
#> SRR1201760 2 0 1 0 1 0 0 0
#> SRR1201761 2 0 1 0 1 0 0 0
#> SRR1201763 2 0 1 0 1 0 0 0
#> SRR1201762 2 0 1 0 1 0 0 0
#> SRR1201764 2 0 1 0 1 0 0 0
#> SRR1201766 2 0 1 0 1 0 0 0
#> SRR1201768 2 0 1 0 1 0 0 0
#> SRR1201769 2 0 1 0 1 0 0 0
#> SRR1201767 2 0 1 0 1 0 0 0
#> SRR1201770 2 0 1 0 1 0 0 0
#> SRR1201771 2 0 1 0 1 0 0 0
#> SRR1201772 2 0 1 0 1 0 0 0
#> SRR1201773 2 0 1 0 1 0 0 0
#> SRR1201774 2 0 1 0 1 0 0 0
#> SRR1201786 2 0 1 0 1 0 0 0
#> SRR1201784 2 0 1 0 1 0 0 0
#> SRR1201785 2 0 1 0 1 0 0 0
#> SRR1201778 2 0 1 0 1 0 0 0
#> SRR1201779 2 0 1 0 1 0 0 0
#> SRR1201781 2 0 1 0 1 0 0 0
#> SRR1201780 2 0 1 0 1 0 0 0
#> SRR1201783 2 0 1 0 1 0 0 0
#> SRR1201782 2 0 1 0 1 0 0 0
#> SRR1201798 2 0 1 0 1 0 0 0
#> SRR1201797 2 0 1 0 1 0 0 0
#> SRR1201796 2 0 1 0 1 0 0 0
#> SRR1201795 2 0 1 0 1 0 0 0
#> SRR1201799 2 0 1 0 1 0 0 0
#> SRR1201794 2 0 1 0 1 0 0 0
#> SRR1201793 2 0 1 0 1 0 0 0
#> SRR1201792 2 0 1 0 1 0 0 0
#> SRR1201791 2 0 1 0 1 0 0 0
#> SRR1201807 2 0 1 0 1 0 0 0
#> SRR1201808 2 0 1 0 1 0 0 0
#> SRR1201803 2 0 1 0 1 0 0 0
#> SRR1201804 2 0 1 0 1 0 0 0
#> SRR1201805 2 0 1 0 1 0 0 0
#> SRR1201806 2 0 1 0 1 0 0 0
#> SRR1201801 2 0 1 0 1 0 0 0
#> SRR1201802 2 0 1 0 1 0 0 0
#> SRR1201800 2 0 1 0 1 0 0 0
#> SRR1201814 2 0 1 0 1 0 0 0
#> SRR1201816 2 0 1 0 1 0 0 0
#> SRR1201815 2 0 1 0 1 0 0 0
#> SRR1201819 2 0 1 0 1 0 0 0
#> SRR1201820 2 0 1 0 1 0 0 0
#> SRR1201813 2 0 1 0 1 0 0 0
#> SRR1201817 2 0 1 0 1 0 0 0
#> SRR1201818 2 0 1 0 1 0 0 0
#> SRR1201825 2 0 1 0 1 0 0 0
#> SRR1201827 2 0 1 0 1 0 0 0
#> SRR1201828 2 0 1 0 1 0 0 0
#> SRR1201826 2 0 1 0 1 0 0 0
#> SRR1201829 2 0 1 0 1 0 0 0
#> SRR1201830 2 0 1 0 1 0 0 0
#> SRR1201831 2 0 1 0 1 0 0 0
#> SRR1201832 2 0 1 0 1 0 0 0
#> SRR1201833 2 0 1 0 1 0 0 0
#> SRR1201865 2 0 1 0 1 0 0 0
#> SRR1201866 2 0 1 0 1 0 0 0
#> SRR1201867 2 0 1 0 1 0 0 0
#> SRR1201861 2 0 1 0 1 0 0 0
#> SRR1201862 2 0 1 0 1 0 0 0
#> SRR1201863 2 0 1 0 1 0 0 0
#> SRR1201859 2 0 1 0 1 0 0 0
#> SRR1201864 2 0 1 0 1 0 0 0
#> SRR1201860 2 0 1 0 1 0 0 0
#> SRR1201873 2 0 1 0 1 0 0 0
#> SRR1201871 2 0 1 0 1 0 0 0
#> SRR1201872 2 0 1 0 1 0 0 0
#> SRR1201980 2 0 1 0 1 0 0 0
#> SRR1201979 2 0 1 0 1 0 0 0
#> SRR1201982 2 0 1 0 1 0 0 0
#> SRR1201981 2 0 1 0 1 0 0 0
#> SRR1201998 2 0 1 0 1 0 0 0
#> SRR1201996 2 0 1 0 1 0 0 0
#> SRR1201997 2 0 1 0 1 0 0 0
#> SRR1202005 2 0 1 0 1 0 0 0
#> SRR1202006 2 0 1 0 1 0 0 0
#> SRR1202088 2 0 1 0 1 0 0 0
#> SRR1202087 2 0 1 0 1 0 0 0
#> SRR1202093 2 0 1 0 1 0 0 0
#> SRR1202092 2 0 1 0 1 0 0 0
#> SRR1202288 2 0 1 0 1 0 0 0
#> SRR1202289 2 0 1 0 1 0 0 0
#> SRR1202299 2 0 1 0 1 0 0 0
#> SRR1202298 2 0 1 0 1 0 0 0
#> SRR1202303 2 0 1 0 1 0 0 0
#> SRR1202372 2 0 1 0 1 0 0 0
#> SRR1202371 2 0 1 0 1 0 0 0
#> SRR1202563 2 0 1 0 1 0 0 0
#> SRR1202565 2 0 1 0 1 0 0 0
#> SRR1202564 2 0 1 0 1 0 0 0
#> SRR1202649 2 0 1 0 1 0 0 0
#> SRR1202650 2 0 1 0 1 0 0 0
#> SRR1202651 2 0 1 0 1 0 0 0
#> SRR1202843 1 0 1 1 0 0 0 0
#> SRR1202844 1 0 1 1 0 0 0 0
#> SRR1202845 2 0 1 0 1 0 0 0
#> SRR1202847 2 0 1 0 1 0 0 0
#> SRR1202846 2 0 1 0 1 0 0 0
#> SRR1202945 1 0 1 1 0 0 0 0
#> SRR1202949 1 0 1 1 0 0 0 0
#> SRR1202977 1 0 1 1 0 0 0 0
#> SRR1202978 1 0 1 1 0 0 0 0
#> SRR1202979 1 0 1 1 0 0 0 0
#> SRR1202990 1 0 1 1 0 0 0 0
#> SRR1202999 1 0 1 1 0 0 0 0
#> SRR1203005 1 0 1 1 0 0 0 0
#> SRR1203006 1 0 1 1 0 0 0 0
#> SRR1203007 1 0 1 1 0 0 0 0
#> SRR1203009 1 0 1 1 0 0 0 0
#> SRR1203008 1 0 1 1 0 0 0 0
#> SRR1203010 1 0 1 1 0 0 0 0
#> SRR1203011 1 0 1 1 0 0 0 0
#> SRR1203025 1 0 1 1 0 0 0 0
#> SRR1203026 1 0 1 1 0 0 0 0
#> SRR1203027 1 0 1 1 0 0 0 0
#> SRR1203061 1 0 1 1 0 0 0 0
#> SRR1203089 1 0 1 1 0 0 0 0
#> SRR1203125 1 0 1 1 0 0 0 0
#> SRR1203128 1 0 1 1 0 0 0 0
#> SRR1203129 1 0 1 1 0 0 0 0
#> SRR1203130 1 0 1 1 0 0 0 0
#> SRR1203132 2 0 1 0 1 0 0 0
#> SRR1203131 2 0 1 0 1 0 0 0
#> SRR1203133 1 0 1 1 0 0 0 0
#> SRR1203138 1 0 1 1 0 0 0 0
#> SRR1203760 1 0 1 1 0 0 0 0
#> SRR1203761 1 0 1 1 0 0 0 0
#> SRR1203770 1 0 1 1 0 0 0 0
#> SRR1203771 1 0 1 1 0 0 0 0
#> SRR1203772 1 0 1 1 0 0 0 0
#> SRR1203773 1 0 1 1 0 0 0 0
#> SRR1203774 1 0 1 1 0 0 0 0
#> SRR1203775 1 0 1 1 0 0 0 0
#> SRR1203800 1 0 1 1 0 0 0 0
#> SRR1203801 1 0 1 1 0 0 0 0
#> SRR1203802 1 0 1 1 0 0 0 0
#> SRR1203803 1 0 1 1 0 0 0 0
#> SRR1203804 1 0 1 1 0 0 0 0
#> SRR1203805 1 0 1 1 0 0 0 0
#> SRR1203806 1 0 1 1 0 0 0 0
#> SRR1203807 1 0 1 1 0 0 0 0
#> SRR1203808 1 0 1 1 0 0 0 0
#> SRR1203811 1 0 1 1 0 0 0 0
#> SRR1203812 1 0 1 1 0 0 0 0
#> SRR1203813 1 0 1 1 0 0 0 0
#> SRR1203814 1 0 1 1 0 0 0 0
#> SRR1203815 1 0 1 1 0 0 0 0
#> SRR1203816 1 0 1 1 0 0 0 0
#> SRR1203817 1 0 1 1 0 0 0 0
#> SRR1203818 1 0 1 1 0 0 0 0
#> SRR1203819 1 0 1 1 0 0 0 0
#> SRR1203822 1 0 1 1 0 0 0 0
#> SRR1203823 1 0 1 1 0 0 0 0
#> SRR1203824 1 0 1 1 0 0 0 0
#> SRR1203825 1 0 1 1 0 0 0 0
#> SRR1203826 1 0 1 1 0 0 0 0
#> SRR1203827 5 0 0 0 0 0 0 1
#> SRR1203828 1 0 1 1 0 0 0 0
#> SRR1203829 1 0 1 1 0 0 0 0
#> SRR1203830 1 0 1 1 0 0 0 0
#> SRR1203831 1 0 1 1 0 0 0 0
#> SRR1203832 1 0 1 1 0 0 0 0
#> SRR1203833 1 0 1 1 0 0 0 0
#> SRR1203834 1 0 1 1 0 0 0 0
#> SRR1203835 1 0 1 1 0 0 0 0
#> SRR1203836 1 0 1 1 0 0 0 0
#> SRR1203837 1 0 1 1 0 0 0 0
#> SRR1203838 1 0 1 1 0 0 0 0
#> SRR1203839 1 0 1 1 0 0 0 0
#> SRR1203842 3 0 0 0 0 1 0 0
#> SRR1203843 1 0 1 1 0 0 0 0
#> SRR1203845 2 0 1 0 1 0 0 0
#> SRR1203844 2 0 1 0 1 0 0 0
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 3 0 1 0 0 1 0 0 0
#> SRR1201590 3 0 1 0 0 1 0 0 0
#> SRR1201593 3 0 1 0 0 1 0 0 0
#> SRR1201592 3 0 1 0 0 1 0 0 0
#> SRR1201617 3 0 1 0 0 1 0 0 0
#> SRR1201616 3 0 1 0 0 1 0 0 0
#> SRR1201619 3 0 1 0 0 1 0 0 0
#> SRR1201618 3 0 1 0 0 1 0 0 0
#> SRR1201620 3 0 1 0 0 1 0 0 0
#> SRR1201621 3 0 1 0 0 1 0 0 0
#> SRR1201623 3 0 1 0 0 1 0 0 0
#> SRR1201622 3 0 1 0 0 1 0 0 0
#> SRR1201624 3 0 1 0 0 1 0 0 0
#> SRR1201625 3 0 1 0 0 1 0 0 0
#> SRR1201626 4 0 0 0 0 0 1 0 0
#> SRR1201627 3 0 1 0 0 1 0 0 0
#> SRR1201628 3 0 1 0 0 1 0 0 0
#> SRR1201629 3 0 1 0 0 1 0 0 0
#> SRR1201630 3 0 1 0 0 1 0 0 0
#> SRR1201631 3 0 1 0 0 1 0 0 0
#> SRR1201641 3 0 1 0 0 1 0 0 0
#> SRR1201640 3 0 1 0 0 1 0 0 0
#> SRR1201643 3 0 1 0 0 1 0 0 0
#> SRR1201644 3 0 1 0 0 1 0 0 0
#> SRR1201661 3 0 1 0 0 1 0 0 0
#> SRR1201662 3 0 1 0 0 1 0 0 0
#> SRR1201663 3 0 1 0 0 1 0 0 0
#> SRR1201664 3 0 1 0 0 1 0 0 0
#> SRR1201665 3 0 1 0 0 1 0 0 0
#> SRR1201666 3 0 1 0 0 1 0 0 0
#> SRR1201667 3 0 1 0 0 1 0 0 0
#> SRR1201668 3 0 1 0 0 1 0 0 0
#> SRR1201670 3 0 1 0 0 1 0 0 0
#> SRR1201669 3 0 1 0 0 1 0 0 0
#> SRR1201673 3 0 1 0 0 1 0 0 0
#> SRR1201672 3 0 1 0 0 1 0 0 0
#> SRR1201671 3 0 1 0 0 1 0 0 0
#> SRR1201677 3 0 1 0 0 1 0 0 0
#> SRR1201676 3 0 1 0 0 1 0 0 0
#> SRR1201675 3 0 1 0 0 1 0 0 0
#> SRR1201674 3 0 1 0 0 1 0 0 0
#> SRR1201678 3 0 1 0 0 1 0 0 0
#> SRR1201682 3 0 1 0 0 1 0 0 0
#> SRR1201683 3 0 1 0 0 1 0 0 0
#> SRR1201680 3 0 1 0 0 1 0 0 0
#> SRR1201681 3 0 1 0 0 1 0 0 0
#> SRR1201679 3 0 1 0 0 1 0 0 0
#> SRR1201686 3 0 1 0 0 1 0 0 0
#> SRR1201687 3 0 1 0 0 1 0 0 0
#> SRR1201688 3 0 1 0 0 1 0 0 0
#> SRR1201689 3 0 1 0 0 1 0 0 0
#> SRR1201685 3 0 1 0 0 1 0 0 0
#> SRR1201692 3 0 1 0 0 1 0 0 0
#> SRR1201691 3 0 1 0 0 1 0 0 0
#> SRR1201690 3 0 1 0 0 1 0 0 0
#> SRR1201696 3 0 1 0 0 1 0 0 0
#> SRR1201695 3 0 1 0 0 1 0 0 0
#> SRR1201694 3 0 1 0 0 1 0 0 0
#> SRR1201693 3 0 1 0 0 1 0 0 0
#> SRR1201697 3 0 1 0 0 1 0 0 0
#> SRR1201698 3 0 1 0 0 1 0 0 0
#> SRR1201700 3 0 1 0 0 1 0 0 0
#> SRR1201708 3 0 1 0 0 1 0 0 0
#> SRR1201707 3 0 1 0 0 1 0 0 0
#> SRR1201706 3 0 1 0 0 1 0 0 0
#> SRR1201702 3 0 1 0 0 1 0 0 0
#> SRR1201705 3 0 1 0 0 1 0 0 0
#> SRR1201701 3 0 1 0 0 1 0 0 0
#> SRR1201704 3 0 1 0 0 1 0 0 0
#> SRR1201703 3 0 1 0 0 1 0 0 0
#> SRR1201716 3 0 1 0 0 1 0 0 0
#> SRR1201715 3 0 1 0 0 1 0 0 0
#> SRR1201717 3 0 1 0 0 1 0 0 0
#> SRR1201712 3 0 1 0 0 1 0 0 0
#> SRR1201709 3 0 1 0 0 1 0 0 0
#> SRR1201711 3 0 1 0 0 1 0 0 0
#> SRR1201714 3 0 1 0 0 1 0 0 0
#> SRR1201713 3 0 1 0 0 1 0 0 0
#> SRR1201710 3 0 1 0 0 1 0 0 0
#> SRR1201719 3 0 1 0 0 1 0 0 0
#> SRR1201718 3 0 1 0 0 1 0 0 0
#> SRR1201721 3 0 1 0 0 1 0 0 0
#> SRR1201720 3 0 1 0 0 1 0 0 0
#> SRR1201723 3 0 1 0 0 1 0 0 0
#> SRR1201722 3 0 1 0 0 1 0 0 0
#> SRR1201725 3 0 1 0 0 1 0 0 0
#> SRR1201724 3 0 1 0 0 1 0 0 0
#> SRR1201726 3 0 1 0 0 1 0 0 0
#> SRR1201727 3 0 1 0 0 1 0 0 0
#> SRR1201731 3 0 1 0 0 1 0 0 0
#> SRR1201730 3 0 1 0 0 1 0 0 0
#> SRR1201734 3 0 1 0 0 1 0 0 0
#> SRR1201733 3 0 1 0 0 1 0 0 0
#> SRR1201736 3 0 1 0 0 1 0 0 0
#> SRR1201737 3 0 1 0 0 1 0 0 0
#> SRR1201739 3 0 1 0 0 1 0 0 0
#> SRR1201738 3 0 1 0 0 1 0 0 0
#> SRR1201742 3 0 1 0 0 1 0 0 0
#> SRR1201743 3 0 1 0 0 1 0 0 0
#> SRR1201745 3 0 1 0 0 1 0 0 0
#> SRR1201744 3 0 1 0 0 1 0 0 0
#> SRR1201749 3 0 1 0 0 1 0 0 0
#> SRR1201750 3 0 1 0 0 1 0 0 0
#> SRR1201752 3 0 1 0 0 1 0 0 0
#> SRR1201751 3 0 1 0 0 1 0 0 0
#> SRR1201754 3 0 1 0 0 1 0 0 0
#> SRR1201753 3 0 1 0 0 1 0 0 0
#> SRR1201758 3 0 1 0 0 1 0 0 0
#> SRR1201759 3 0 1 0 0 1 0 0 0
#> SRR1201760 3 0 1 0 0 1 0 0 0
#> SRR1201761 3 0 1 0 0 1 0 0 0
#> SRR1201763 3 0 1 0 0 1 0 0 0
#> SRR1201762 5 0 0 0 0 0 0 1 0
#> SRR1201764 3 0 1 0 0 1 0 0 0
#> SRR1201766 3 0 1 0 0 1 0 0 0
#> SRR1201768 3 0 1 0 0 1 0 0 0
#> SRR1201769 3 0 1 0 0 1 0 0 0
#> SRR1201767 3 0 1 0 0 1 0 0 0
#> SRR1201770 3 0 1 0 0 1 0 0 0
#> SRR1201771 3 0 1 0 0 1 0 0 0
#> SRR1201772 3 0 1 0 0 1 0 0 0
#> SRR1201773 3 0 1 0 0 1 0 0 0
#> SRR1201774 3 0 1 0 0 1 0 0 0
#> SRR1201786 3 0 1 0 0 1 0 0 0
#> SRR1201784 3 0 1 0 0 1 0 0 0
#> SRR1201785 3 0 1 0 0 1 0 0 0
#> SRR1201778 3 0 1 0 0 1 0 0 0
#> SRR1201779 3 0 1 0 0 1 0 0 0
#> SRR1201781 3 0 1 0 0 1 0 0 0
#> SRR1201780 3 0 1 0 0 1 0 0 0
#> SRR1201783 3 0 1 0 0 1 0 0 0
#> SRR1201782 3 0 1 0 0 1 0 0 0
#> SRR1201798 3 0 1 0 0 1 0 0 0
#> SRR1201797 3 0 1 0 0 1 0 0 0
#> SRR1201796 3 0 1 0 0 1 0 0 0
#> SRR1201795 3 0 1 0 0 1 0 0 0
#> SRR1201799 3 0 1 0 0 1 0 0 0
#> SRR1201794 3 0 1 0 0 1 0 0 0
#> SRR1201793 3 0 1 0 0 1 0 0 0
#> SRR1201792 3 0 1 0 0 1 0 0 0
#> SRR1201791 3 0 1 0 0 1 0 0 0
#> SRR1201807 3 0 1 0 0 1 0 0 0
#> SRR1201808 3 0 1 0 0 1 0 0 0
#> SRR1201803 3 0 1 0 0 1 0 0 0
#> SRR1201804 3 0 1 0 0 1 0 0 0
#> SRR1201805 3 0 1 0 0 1 0 0 0
#> SRR1201806 3 0 1 0 0 1 0 0 0
#> SRR1201801 3 0 1 0 0 1 0 0 0
#> SRR1201802 3 0 1 0 0 1 0 0 0
#> SRR1201800 3 0 1 0 0 1 0 0 0
#> SRR1201814 3 0 1 0 0 1 0 0 0
#> SRR1201816 3 0 1 0 0 1 0 0 0
#> SRR1201815 3 0 1 0 0 1 0 0 0
#> SRR1201819 3 0 1 0 0 1 0 0 0
#> SRR1201820 3 0 1 0 0 1 0 0 0
#> SRR1201813 3 0 1 0 0 1 0 0 0
#> SRR1201817 3 0 1 0 0 1 0 0 0
#> SRR1201818 3 0 1 0 0 1 0 0 0
#> SRR1201825 3 0 1 0 0 1 0 0 0
#> SRR1201827 3 0 1 0 0 1 0 0 0
#> SRR1201828 3 0 1 0 0 1 0 0 0
#> SRR1201826 3 0 1 0 0 1 0 0 0
#> SRR1201829 3 0 1 0 0 1 0 0 0
#> SRR1201830 3 0 1 0 0 1 0 0 0
#> SRR1201831 3 0 1 0 0 1 0 0 0
#> SRR1201832 3 0 1 0 0 1 0 0 0
#> SRR1201833 3 0 1 0 0 1 0 0 0
#> SRR1201865 3 0 1 0 0 1 0 0 0
#> SRR1201866 3 0 1 0 0 1 0 0 0
#> SRR1201867 3 0 1 0 0 1 0 0 0
#> SRR1201861 3 0 1 0 0 1 0 0 0
#> SRR1201862 3 0 1 0 0 1 0 0 0
#> SRR1201863 3 0 1 0 0 1 0 0 0
#> SRR1201859 3 0 1 0 0 1 0 0 0
#> SRR1201864 3 0 1 0 0 1 0 0 0
#> SRR1201860 3 0 1 0 0 1 0 0 0
#> SRR1201873 3 0 1 0 0 1 0 0 0
#> SRR1201871 3 0 1 0 0 1 0 0 0
#> SRR1201872 3 0 1 0 0 1 0 0 0
#> SRR1201980 3 0 1 0 0 1 0 0 0
#> SRR1201979 3 0 1 0 0 1 0 0 0
#> SRR1201982 3 0 1 0 0 1 0 0 0
#> SRR1201981 3 0 1 0 0 1 0 0 0
#> SRR1201998 3 0 1 0 0 1 0 0 0
#> SRR1201996 3 0 1 0 0 1 0 0 0
#> SRR1201997 3 0 1 0 0 1 0 0 0
#> SRR1202005 3 0 1 0 0 1 0 0 0
#> SRR1202006 3 0 1 0 0 1 0 0 0
#> SRR1202088 3 0 1 0 0 1 0 0 0
#> SRR1202087 3 0 1 0 0 1 0 0 0
#> SRR1202093 3 0 1 0 0 1 0 0 0
#> SRR1202092 3 0 1 0 0 1 0 0 0
#> SRR1202288 3 0 1 0 0 1 0 0 0
#> SRR1202289 3 0 1 0 0 1 0 0 0
#> SRR1202299 3 0 1 0 0 1 0 0 0
#> SRR1202298 3 0 1 0 0 1 0 0 0
#> SRR1202303 3 0 1 0 0 1 0 0 0
#> SRR1202372 3 0 1 0 0 1 0 0 0
#> SRR1202371 3 0 1 0 0 1 0 0 0
#> SRR1202563 3 0 1 0 0 1 0 0 0
#> SRR1202565 3 0 1 0 0 1 0 0 0
#> SRR1202564 3 0 1 0 0 1 0 0 0
#> SRR1202649 3 0 1 0 0 1 0 0 0
#> SRR1202650 3 0 1 0 0 1 0 0 0
#> SRR1202651 3 0 1 0 0 1 0 0 0
#> SRR1202843 1 0 1 1 0 0 0 0 0
#> SRR1202844 1 0 1 1 0 0 0 0 0
#> SRR1202845 3 0 1 0 0 1 0 0 0
#> SRR1202847 3 0 1 0 0 1 0 0 0
#> SRR1202846 3 0 1 0 0 1 0 0 0
#> SRR1202945 1 0 1 1 0 0 0 0 0
#> SRR1202949 1 0 1 1 0 0 0 0 0
#> SRR1202977 1 0 1 1 0 0 0 0 0
#> SRR1202978 1 0 1 1 0 0 0 0 0
#> SRR1202979 1 0 1 1 0 0 0 0 0
#> SRR1202990 1 0 1 1 0 0 0 0 0
#> SRR1202999 1 0 1 1 0 0 0 0 0
#> SRR1203005 1 0 1 1 0 0 0 0 0
#> SRR1203006 1 0 1 1 0 0 0 0 0
#> SRR1203007 1 0 1 1 0 0 0 0 0
#> SRR1203009 1 0 1 1 0 0 0 0 0
#> SRR1203008 1 0 1 1 0 0 0 0 0
#> SRR1203010 1 0 1 1 0 0 0 0 0
#> SRR1203011 1 0 1 1 0 0 0 0 0
#> SRR1203025 1 0 1 1 0 0 0 0 0
#> SRR1203026 1 0 1 1 0 0 0 0 0
#> SRR1203027 1 0 1 1 0 0 0 0 0
#> SRR1203061 1 0 1 1 0 0 0 0 0
#> SRR1203089 1 0 1 1 0 0 0 0 0
#> SRR1203125 1 0 1 1 0 0 0 0 0
#> SRR1203128 1 0 1 1 0 0 0 0 0
#> SRR1203129 1 0 1 1 0 0 0 0 0
#> SRR1203130 1 0 1 1 0 0 0 0 0
#> SRR1203132 3 0 1 0 0 1 0 0 0
#> SRR1203131 3 0 1 0 0 1 0 0 0
#> SRR1203133 1 0 1 1 0 0 0 0 0
#> SRR1203138 1 0 1 1 0 0 0 0 0
#> SRR1203760 1 0 1 1 0 0 0 0 0
#> SRR1203761 1 0 1 1 0 0 0 0 0
#> SRR1203770 1 0 1 1 0 0 0 0 0
#> SRR1203771 1 0 1 1 0 0 0 0 0
#> SRR1203772 1 0 1 1 0 0 0 0 0
#> SRR1203773 1 0 1 1 0 0 0 0 0
#> SRR1203774 1 0 1 1 0 0 0 0 0
#> SRR1203775 1 0 1 1 0 0 0 0 0
#> SRR1203800 1 0 1 1 0 0 0 0 0
#> SRR1203801 1 0 1 1 0 0 0 0 0
#> SRR1203802 1 0 1 1 0 0 0 0 0
#> SRR1203803 1 0 1 1 0 0 0 0 0
#> SRR1203804 1 0 1 1 0 0 0 0 0
#> SRR1203805 1 0 1 1 0 0 0 0 0
#> SRR1203806 1 0 1 1 0 0 0 0 0
#> SRR1203807 1 0 1 1 0 0 0 0 0
#> SRR1203808 1 0 1 1 0 0 0 0 0
#> SRR1203811 1 0 1 1 0 0 0 0 0
#> SRR1203812 1 0 1 1 0 0 0 0 0
#> SRR1203813 1 0 1 1 0 0 0 0 0
#> SRR1203814 1 0 1 1 0 0 0 0 0
#> SRR1203815 1 0 1 1 0 0 0 0 0
#> SRR1203816 1 0 1 1 0 0 0 0 0
#> SRR1203817 1 0 1 1 0 0 0 0 0
#> SRR1203818 1 0 1 1 0 0 0 0 0
#> SRR1203819 1 0 1 1 0 0 0 0 0
#> SRR1203822 1 0 1 1 0 0 0 0 0
#> SRR1203823 1 0 1 1 0 0 0 0 0
#> SRR1203824 1 0 1 1 0 0 0 0 0
#> SRR1203825 1 0 1 1 0 0 0 0 0
#> SRR1203826 1 0 1 1 0 0 0 0 0
#> SRR1203827 2 0 0 0 1 0 0 0 0
#> SRR1203828 1 0 1 1 0 0 0 0 0
#> SRR1203829 1 0 1 1 0 0 0 0 0
#> SRR1203830 1 0 1 1 0 0 0 0 0
#> SRR1203831 1 0 1 1 0 0 0 0 0
#> SRR1203832 1 0 1 1 0 0 0 0 0
#> SRR1203833 1 0 1 1 0 0 0 0 0
#> SRR1203834 1 0 1 1 0 0 0 0 0
#> SRR1203835 1 0 1 1 0 0 0 0 0
#> SRR1203836 1 0 1 1 0 0 0 0 0
#> SRR1203837 1 0 1 1 0 0 0 0 0
#> SRR1203838 1 0 1 1 0 0 0 0 0
#> SRR1203839 1 0 1 1 0 0 0 0 0
#> SRR1203842 6 0 0 0 0 0 0 0 1
#> SRR1203843 1 0 1 1 0 0 0 0 0
#> SRR1203845 3 0 1 0 0 1 0 0 0
#> SRR1203844 3 0 1 0 0 1 0 0 0
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["ATC", "kmeans"]
# you can also extract it by
# res = res_list["ATC:kmeans"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'ATC' method.
#> Subgroups are detected by 'kmeans' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 3.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 0.999 1.000 0.3765 0.625 0.625
#> 3 3 1.000 0.969 0.978 0.1246 0.959 0.935
#> 4 4 0.682 0.686 0.872 0.3799 0.807 0.673
#> 5 5 0.567 0.714 0.786 0.1143 0.875 0.697
#> 6 6 0.583 0.637 0.761 0.0846 0.928 0.789
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 3
#> attr(,"optional")
#> [1] 2
There is also optional best \(k\) = 2 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0.000 0.999 0.000 1.000
#> SRR1201590 2 0.000 0.999 0.000 1.000
#> SRR1201593 2 0.000 0.999 0.000 1.000
#> SRR1201592 2 0.000 0.999 0.000 1.000
#> SRR1201617 2 0.000 0.999 0.000 1.000
#> SRR1201616 2 0.000 0.999 0.000 1.000
#> SRR1201619 2 0.000 0.999 0.000 1.000
#> SRR1201618 2 0.000 0.999 0.000 1.000
#> SRR1201620 2 0.000 0.999 0.000 1.000
#> SRR1201621 2 0.000 0.999 0.000 1.000
#> SRR1201623 2 0.000 0.999 0.000 1.000
#> SRR1201622 2 0.000 0.999 0.000 1.000
#> SRR1201624 2 0.000 0.999 0.000 1.000
#> SRR1201625 2 0.000 0.999 0.000 1.000
#> SRR1201626 2 0.000 0.999 0.000 1.000
#> SRR1201627 2 0.000 0.999 0.000 1.000
#> SRR1201628 2 0.000 0.999 0.000 1.000
#> SRR1201629 2 0.000 0.999 0.000 1.000
#> SRR1201630 2 0.000 0.999 0.000 1.000
#> SRR1201631 2 0.000 0.999 0.000 1.000
#> SRR1201641 2 0.000 0.999 0.000 1.000
#> SRR1201640 2 0.000 0.999 0.000 1.000
#> SRR1201643 2 0.000 0.999 0.000 1.000
#> SRR1201644 2 0.000 0.999 0.000 1.000
#> SRR1201661 2 0.000 0.999 0.000 1.000
#> SRR1201662 2 0.000 0.999 0.000 1.000
#> SRR1201663 2 0.000 0.999 0.000 1.000
#> SRR1201664 2 0.000 0.999 0.000 1.000
#> SRR1201665 2 0.000 0.999 0.000 1.000
#> SRR1201666 2 0.000 0.999 0.000 1.000
#> SRR1201667 2 0.000 0.999 0.000 1.000
#> SRR1201668 2 0.000 0.999 0.000 1.000
#> SRR1201670 2 0.000 0.999 0.000 1.000
#> SRR1201669 2 0.000 0.999 0.000 1.000
#> SRR1201673 2 0.000 0.999 0.000 1.000
#> SRR1201672 2 0.000 0.999 0.000 1.000
#> SRR1201671 2 0.000 0.999 0.000 1.000
#> SRR1201677 2 0.000 0.999 0.000 1.000
#> SRR1201676 2 0.000 0.999 0.000 1.000
#> SRR1201675 2 0.000 0.999 0.000 1.000
#> SRR1201674 2 0.000 0.999 0.000 1.000
#> SRR1201678 2 0.000 0.999 0.000 1.000
#> SRR1201682 2 0.000 0.999 0.000 1.000
#> SRR1201683 2 0.000 0.999 0.000 1.000
#> SRR1201680 2 0.000 0.999 0.000 1.000
#> SRR1201681 2 0.000 0.999 0.000 1.000
#> SRR1201679 2 0.000 0.999 0.000 1.000
#> SRR1201686 2 0.000 0.999 0.000 1.000
#> SRR1201687 2 0.000 0.999 0.000 1.000
#> SRR1201688 2 0.000 0.999 0.000 1.000
#> SRR1201689 2 0.000 0.999 0.000 1.000
#> SRR1201685 2 0.000 0.999 0.000 1.000
#> SRR1201692 2 0.000 0.999 0.000 1.000
#> SRR1201691 2 0.000 0.999 0.000 1.000
#> SRR1201690 2 0.000 0.999 0.000 1.000
#> SRR1201696 2 0.000 0.999 0.000 1.000
#> SRR1201695 2 0.000 0.999 0.000 1.000
#> SRR1201694 2 0.000 0.999 0.000 1.000
#> SRR1201693 2 0.000 0.999 0.000 1.000
#> SRR1201697 2 0.000 0.999 0.000 1.000
#> SRR1201698 2 0.000 0.999 0.000 1.000
#> SRR1201700 2 0.000 0.999 0.000 1.000
#> SRR1201708 2 0.000 0.999 0.000 1.000
#> SRR1201707 2 0.000 0.999 0.000 1.000
#> SRR1201706 2 0.000 0.999 0.000 1.000
#> SRR1201702 2 0.000 0.999 0.000 1.000
#> SRR1201705 2 0.000 0.999 0.000 1.000
#> SRR1201701 2 0.000 0.999 0.000 1.000
#> SRR1201704 2 0.000 0.999 0.000 1.000
#> SRR1201703 2 0.000 0.999 0.000 1.000
#> SRR1201716 2 0.000 0.999 0.000 1.000
#> SRR1201715 2 0.000 0.999 0.000 1.000
#> SRR1201717 2 0.000 0.999 0.000 1.000
#> SRR1201712 2 0.000 0.999 0.000 1.000
#> SRR1201709 2 0.000 0.999 0.000 1.000
#> SRR1201711 2 0.000 0.999 0.000 1.000
#> SRR1201714 2 0.000 0.999 0.000 1.000
#> SRR1201713 2 0.000 0.999 0.000 1.000
#> SRR1201710 2 0.000 0.999 0.000 1.000
#> SRR1201719 2 0.000 0.999 0.000 1.000
#> SRR1201718 2 0.000 0.999 0.000 1.000
#> SRR1201721 2 0.000 0.999 0.000 1.000
#> SRR1201720 2 0.000 0.999 0.000 1.000
#> SRR1201723 2 0.000 0.999 0.000 1.000
#> SRR1201722 2 0.000 0.999 0.000 1.000
#> SRR1201725 2 0.000 0.999 0.000 1.000
#> SRR1201724 2 0.000 0.999 0.000 1.000
#> SRR1201726 2 0.000 0.999 0.000 1.000
#> SRR1201727 2 0.000 0.999 0.000 1.000
#> SRR1201731 2 0.000 0.999 0.000 1.000
#> SRR1201730 2 0.000 0.999 0.000 1.000
#> SRR1201734 2 0.000 0.999 0.000 1.000
#> SRR1201733 2 0.000 0.999 0.000 1.000
#> SRR1201736 2 0.000 0.999 0.000 1.000
#> SRR1201737 2 0.000 0.999 0.000 1.000
#> SRR1201739 2 0.000 0.999 0.000 1.000
#> SRR1201738 2 0.000 0.999 0.000 1.000
#> SRR1201742 2 0.000 0.999 0.000 1.000
#> SRR1201743 2 0.000 0.999 0.000 1.000
#> SRR1201745 2 0.000 0.999 0.000 1.000
#> SRR1201744 2 0.000 0.999 0.000 1.000
#> SRR1201749 2 0.000 0.999 0.000 1.000
#> SRR1201750 2 0.000 0.999 0.000 1.000
#> SRR1201752 2 0.000 0.999 0.000 1.000
#> SRR1201751 2 0.000 0.999 0.000 1.000
#> SRR1201754 2 0.000 0.999 0.000 1.000
#> SRR1201753 2 0.000 0.999 0.000 1.000
#> SRR1201758 2 0.000 0.999 0.000 1.000
#> SRR1201759 2 0.000 0.999 0.000 1.000
#> SRR1201760 2 0.000 0.999 0.000 1.000
#> SRR1201761 2 0.000 0.999 0.000 1.000
#> SRR1201763 2 0.000 0.999 0.000 1.000
#> SRR1201762 2 0.000 0.999 0.000 1.000
#> SRR1201764 2 0.000 0.999 0.000 1.000
#> SRR1201766 2 0.000 0.999 0.000 1.000
#> SRR1201768 2 0.000 0.999 0.000 1.000
#> SRR1201769 2 0.000 0.999 0.000 1.000
#> SRR1201767 2 0.000 0.999 0.000 1.000
#> SRR1201770 2 0.000 0.999 0.000 1.000
#> SRR1201771 2 0.000 0.999 0.000 1.000
#> SRR1201772 2 0.000 0.999 0.000 1.000
#> SRR1201773 2 0.000 0.999 0.000 1.000
#> SRR1201774 2 0.000 0.999 0.000 1.000
#> SRR1201786 2 0.000 0.999 0.000 1.000
#> SRR1201784 2 0.000 0.999 0.000 1.000
#> SRR1201785 2 0.000 0.999 0.000 1.000
#> SRR1201778 2 0.000 0.999 0.000 1.000
#> SRR1201779 2 0.000 0.999 0.000 1.000
#> SRR1201781 2 0.000 0.999 0.000 1.000
#> SRR1201780 2 0.000 0.999 0.000 1.000
#> SRR1201783 2 0.000 0.999 0.000 1.000
#> SRR1201782 2 0.000 0.999 0.000 1.000
#> SRR1201798 2 0.000 0.999 0.000 1.000
#> SRR1201797 2 0.000 0.999 0.000 1.000
#> SRR1201796 2 0.000 0.999 0.000 1.000
#> SRR1201795 2 0.000 0.999 0.000 1.000
#> SRR1201799 2 0.000 0.999 0.000 1.000
#> SRR1201794 2 0.000 0.999 0.000 1.000
#> SRR1201793 2 0.000 0.999 0.000 1.000
#> SRR1201792 2 0.000 0.999 0.000 1.000
#> SRR1201791 2 0.000 0.999 0.000 1.000
#> SRR1201807 2 0.000 0.999 0.000 1.000
#> SRR1201808 2 0.000 0.999 0.000 1.000
#> SRR1201803 2 0.000 0.999 0.000 1.000
#> SRR1201804 2 0.000 0.999 0.000 1.000
#> SRR1201805 2 0.000 0.999 0.000 1.000
#> SRR1201806 2 0.000 0.999 0.000 1.000
#> SRR1201801 2 0.000 0.999 0.000 1.000
#> SRR1201802 2 0.000 0.999 0.000 1.000
#> SRR1201800 2 0.000 0.999 0.000 1.000
#> SRR1201814 2 0.000 0.999 0.000 1.000
#> SRR1201816 2 0.000 0.999 0.000 1.000
#> SRR1201815 2 0.000 0.999 0.000 1.000
#> SRR1201819 2 0.000 0.999 0.000 1.000
#> SRR1201820 2 0.000 0.999 0.000 1.000
#> SRR1201813 2 0.000 0.999 0.000 1.000
#> SRR1201817 2 0.000 0.999 0.000 1.000
#> SRR1201818 2 0.000 0.999 0.000 1.000
#> SRR1201825 2 0.000 0.999 0.000 1.000
#> SRR1201827 2 0.000 0.999 0.000 1.000
#> SRR1201828 2 0.000 0.999 0.000 1.000
#> SRR1201826 2 0.000 0.999 0.000 1.000
#> SRR1201829 2 0.000 0.999 0.000 1.000
#> SRR1201830 2 0.000 0.999 0.000 1.000
#> SRR1201831 2 0.000 0.999 0.000 1.000
#> SRR1201832 2 0.000 0.999 0.000 1.000
#> SRR1201833 2 0.000 0.999 0.000 1.000
#> SRR1201865 2 0.000 0.999 0.000 1.000
#> SRR1201866 2 0.000 0.999 0.000 1.000
#> SRR1201867 2 0.000 0.999 0.000 1.000
#> SRR1201861 2 0.000 0.999 0.000 1.000
#> SRR1201862 2 0.000 0.999 0.000 1.000
#> SRR1201863 2 0.000 0.999 0.000 1.000
#> SRR1201859 2 0.000 0.999 0.000 1.000
#> SRR1201864 2 0.000 0.999 0.000 1.000
#> SRR1201860 2 0.000 0.999 0.000 1.000
#> SRR1201873 2 0.000 0.999 0.000 1.000
#> SRR1201871 2 0.000 0.999 0.000 1.000
#> SRR1201872 2 0.000 0.999 0.000 1.000
#> SRR1201980 2 0.000 0.999 0.000 1.000
#> SRR1201979 2 0.000 0.999 0.000 1.000
#> SRR1201982 2 0.000 0.999 0.000 1.000
#> SRR1201981 2 0.000 0.999 0.000 1.000
#> SRR1201998 2 0.000 0.999 0.000 1.000
#> SRR1201996 2 0.000 0.999 0.000 1.000
#> SRR1201997 2 0.000 0.999 0.000 1.000
#> SRR1202005 2 0.000 0.999 0.000 1.000
#> SRR1202006 2 0.000 0.999 0.000 1.000
#> SRR1202088 2 0.000 0.999 0.000 1.000
#> SRR1202087 2 0.000 0.999 0.000 1.000
#> SRR1202093 2 0.000 0.999 0.000 1.000
#> SRR1202092 2 0.000 0.999 0.000 1.000
#> SRR1202288 2 0.000 0.999 0.000 1.000
#> SRR1202289 2 0.000 0.999 0.000 1.000
#> SRR1202299 2 0.000 0.999 0.000 1.000
#> SRR1202298 2 0.000 0.999 0.000 1.000
#> SRR1202303 2 0.000 0.999 0.000 1.000
#> SRR1202372 2 0.000 0.999 0.000 1.000
#> SRR1202371 2 0.000 0.999 0.000 1.000
#> SRR1202563 2 0.000 0.999 0.000 1.000
#> SRR1202565 2 0.000 0.999 0.000 1.000
#> SRR1202564 2 0.000 0.999 0.000 1.000
#> SRR1202649 2 0.000 0.999 0.000 1.000
#> SRR1202650 2 0.000 0.999 0.000 1.000
#> SRR1202651 2 0.000 0.999 0.000 1.000
#> SRR1202843 1 0.000 1.000 1.000 0.000
#> SRR1202844 1 0.000 1.000 1.000 0.000
#> SRR1202845 2 0.000 0.999 0.000 1.000
#> SRR1202847 2 0.000 0.999 0.000 1.000
#> SRR1202846 2 0.000 0.999 0.000 1.000
#> SRR1202945 1 0.000 1.000 1.000 0.000
#> SRR1202949 1 0.000 1.000 1.000 0.000
#> SRR1202977 1 0.000 1.000 1.000 0.000
#> SRR1202978 1 0.000 1.000 1.000 0.000
#> SRR1202979 1 0.000 1.000 1.000 0.000
#> SRR1202990 1 0.000 1.000 1.000 0.000
#> SRR1202999 1 0.000 1.000 1.000 0.000
#> SRR1203005 1 0.000 1.000 1.000 0.000
#> SRR1203006 1 0.000 1.000 1.000 0.000
#> SRR1203007 1 0.000 1.000 1.000 0.000
#> SRR1203009 1 0.000 1.000 1.000 0.000
#> SRR1203008 1 0.000 1.000 1.000 0.000
#> SRR1203010 1 0.000 1.000 1.000 0.000
#> SRR1203011 1 0.000 1.000 1.000 0.000
#> SRR1203025 1 0.000 1.000 1.000 0.000
#> SRR1203026 1 0.000 1.000 1.000 0.000
#> SRR1203027 1 0.000 1.000 1.000 0.000
#> SRR1203061 1 0.000 1.000 1.000 0.000
#> SRR1203089 1 0.000 1.000 1.000 0.000
#> SRR1203125 1 0.000 1.000 1.000 0.000
#> SRR1203128 1 0.000 1.000 1.000 0.000
#> SRR1203129 1 0.000 1.000 1.000 0.000
#> SRR1203130 1 0.000 1.000 1.000 0.000
#> SRR1203132 2 0.000 0.999 0.000 1.000
#> SRR1203131 2 0.000 0.999 0.000 1.000
#> SRR1203133 1 0.000 1.000 1.000 0.000
#> SRR1203138 1 0.000 1.000 1.000 0.000
#> SRR1203760 1 0.000 1.000 1.000 0.000
#> SRR1203761 1 0.000 1.000 1.000 0.000
#> SRR1203770 1 0.000 1.000 1.000 0.000
#> SRR1203771 1 0.000 1.000 1.000 0.000
#> SRR1203772 1 0.000 1.000 1.000 0.000
#> SRR1203773 1 0.000 1.000 1.000 0.000
#> SRR1203774 1 0.000 1.000 1.000 0.000
#> SRR1203775 1 0.000 1.000 1.000 0.000
#> SRR1203800 1 0.000 1.000 1.000 0.000
#> SRR1203801 1 0.000 1.000 1.000 0.000
#> SRR1203802 1 0.000 1.000 1.000 0.000
#> SRR1203803 1 0.000 1.000 1.000 0.000
#> SRR1203804 1 0.000 1.000 1.000 0.000
#> SRR1203805 1 0.000 1.000 1.000 0.000
#> SRR1203806 1 0.000 1.000 1.000 0.000
#> SRR1203807 1 0.000 1.000 1.000 0.000
#> SRR1203808 1 0.000 1.000 1.000 0.000
#> SRR1203811 1 0.000 1.000 1.000 0.000
#> SRR1203812 1 0.000 1.000 1.000 0.000
#> SRR1203813 1 0.000 1.000 1.000 0.000
#> SRR1203814 1 0.000 1.000 1.000 0.000
#> SRR1203815 1 0.000 1.000 1.000 0.000
#> SRR1203816 1 0.000 1.000 1.000 0.000
#> SRR1203817 1 0.000 1.000 1.000 0.000
#> SRR1203818 1 0.000 1.000 1.000 0.000
#> SRR1203819 1 0.000 1.000 1.000 0.000
#> SRR1203822 1 0.000 1.000 1.000 0.000
#> SRR1203823 1 0.000 1.000 1.000 0.000
#> SRR1203824 1 0.000 1.000 1.000 0.000
#> SRR1203825 1 0.000 1.000 1.000 0.000
#> SRR1203826 1 0.000 1.000 1.000 0.000
#> SRR1203827 2 0.000 0.999 0.000 1.000
#> SRR1203828 1 0.000 1.000 1.000 0.000
#> SRR1203829 1 0.000 1.000 1.000 0.000
#> SRR1203830 1 0.000 1.000 1.000 0.000
#> SRR1203831 1 0.000 1.000 1.000 0.000
#> SRR1203832 1 0.000 1.000 1.000 0.000
#> SRR1203833 1 0.000 1.000 1.000 0.000
#> SRR1203834 1 0.000 1.000 1.000 0.000
#> SRR1203835 1 0.000 1.000 1.000 0.000
#> SRR1203836 1 0.000 1.000 1.000 0.000
#> SRR1203837 1 0.000 1.000 1.000 0.000
#> SRR1203838 1 0.000 1.000 1.000 0.000
#> SRR1203839 1 0.000 1.000 1.000 0.000
#> SRR1203842 2 0.506 0.874 0.112 0.888
#> SRR1203843 1 0.000 1.000 1.000 0.000
#> SRR1203845 2 0.000 0.999 0.000 1.000
#> SRR1203844 2 0.000 0.999 0.000 1.000
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0.1753 0.967 0 0.952 0.048
#> SRR1201590 2 0.1753 0.967 0 0.952 0.048
#> SRR1201593 2 0.1753 0.967 0 0.952 0.048
#> SRR1201592 2 0.1753 0.967 0 0.952 0.048
#> SRR1201617 2 0.1753 0.967 0 0.952 0.048
#> SRR1201616 2 0.1753 0.967 0 0.952 0.048
#> SRR1201619 2 0.0000 0.970 0 1.000 0.000
#> SRR1201618 2 0.1753 0.967 0 0.952 0.048
#> SRR1201620 2 0.1753 0.967 0 0.952 0.048
#> SRR1201621 2 0.1753 0.967 0 0.952 0.048
#> SRR1201623 2 0.0237 0.970 0 0.996 0.004
#> SRR1201622 2 0.0237 0.970 0 0.996 0.004
#> SRR1201624 3 0.4931 0.737 0 0.232 0.768
#> SRR1201625 2 0.0237 0.970 0 0.996 0.004
#> SRR1201626 3 0.0000 0.729 0 0.000 1.000
#> SRR1201627 3 0.6079 0.499 0 0.388 0.612
#> SRR1201628 2 0.0237 0.970 0 0.996 0.004
#> SRR1201629 2 0.0237 0.970 0 0.996 0.004
#> SRR1201630 2 0.1753 0.967 0 0.952 0.048
#> SRR1201631 2 0.1753 0.967 0 0.952 0.048
#> SRR1201641 2 0.0000 0.970 0 1.000 0.000
#> SRR1201640 2 0.0592 0.971 0 0.988 0.012
#> SRR1201643 2 0.0000 0.970 0 1.000 0.000
#> SRR1201644 2 0.0000 0.970 0 1.000 0.000
#> SRR1201661 2 0.1753 0.967 0 0.952 0.048
#> SRR1201662 2 0.0892 0.970 0 0.980 0.020
#> SRR1201663 2 0.0237 0.970 0 0.996 0.004
#> SRR1201664 2 0.0237 0.970 0 0.996 0.004
#> SRR1201665 2 0.1753 0.967 0 0.952 0.048
#> SRR1201666 2 0.1753 0.967 0 0.952 0.048
#> SRR1201667 2 0.1753 0.967 0 0.952 0.048
#> SRR1201668 2 0.0237 0.970 0 0.996 0.004
#> SRR1201670 2 0.0237 0.970 0 0.996 0.004
#> SRR1201669 2 0.0237 0.970 0 0.996 0.004
#> SRR1201673 2 0.0237 0.970 0 0.996 0.004
#> SRR1201672 2 0.0237 0.970 0 0.996 0.004
#> SRR1201671 2 0.0237 0.970 0 0.996 0.004
#> SRR1201677 2 0.0237 0.970 0 0.996 0.004
#> SRR1201676 2 0.0237 0.970 0 0.996 0.004
#> SRR1201675 2 0.0237 0.970 0 0.996 0.004
#> SRR1201674 2 0.0237 0.970 0 0.996 0.004
#> SRR1201678 2 0.0237 0.970 0 0.996 0.004
#> SRR1201682 2 0.0000 0.970 0 1.000 0.000
#> SRR1201683 2 0.0000 0.970 0 1.000 0.000
#> SRR1201680 2 0.0000 0.970 0 1.000 0.000
#> SRR1201681 2 0.0000 0.970 0 1.000 0.000
#> SRR1201679 2 0.1753 0.967 0 0.952 0.048
#> SRR1201686 2 0.0237 0.970 0 0.996 0.004
#> SRR1201687 2 0.0237 0.970 0 0.996 0.004
#> SRR1201688 2 0.0237 0.970 0 0.996 0.004
#> SRR1201689 2 0.0237 0.970 0 0.996 0.004
#> SRR1201685 2 0.1163 0.970 0 0.972 0.028
#> SRR1201692 2 0.0237 0.970 0 0.996 0.004
#> SRR1201691 2 0.0237 0.970 0 0.996 0.004
#> SRR1201690 2 0.0237 0.970 0 0.996 0.004
#> SRR1201696 2 0.0237 0.970 0 0.996 0.004
#> SRR1201695 2 0.0237 0.970 0 0.996 0.004
#> SRR1201694 2 0.0237 0.970 0 0.996 0.004
#> SRR1201693 2 0.0237 0.970 0 0.996 0.004
#> SRR1201697 2 0.0237 0.970 0 0.996 0.004
#> SRR1201698 2 0.0237 0.970 0 0.996 0.004
#> SRR1201700 2 0.0237 0.970 0 0.996 0.004
#> SRR1201708 2 0.0237 0.970 0 0.996 0.004
#> SRR1201707 2 0.0237 0.970 0 0.996 0.004
#> SRR1201706 2 0.0237 0.970 0 0.996 0.004
#> SRR1201702 2 0.0237 0.970 0 0.996 0.004
#> SRR1201705 2 0.0237 0.970 0 0.996 0.004
#> SRR1201701 2 0.0237 0.970 0 0.996 0.004
#> SRR1201704 2 0.0237 0.970 0 0.996 0.004
#> SRR1201703 2 0.0237 0.970 0 0.996 0.004
#> SRR1201716 2 0.0237 0.970 0 0.996 0.004
#> SRR1201715 2 0.0237 0.970 0 0.996 0.004
#> SRR1201717 2 0.0237 0.970 0 0.996 0.004
#> SRR1201712 2 0.0237 0.970 0 0.996 0.004
#> SRR1201709 2 0.0237 0.970 0 0.996 0.004
#> SRR1201711 2 0.0237 0.970 0 0.996 0.004
#> SRR1201714 2 0.0237 0.970 0 0.996 0.004
#> SRR1201713 2 0.0237 0.970 0 0.996 0.004
#> SRR1201710 2 0.0237 0.970 0 0.996 0.004
#> SRR1201719 2 0.0000 0.970 0 1.000 0.000
#> SRR1201718 2 0.0000 0.970 0 1.000 0.000
#> SRR1201721 2 0.0237 0.970 0 0.996 0.004
#> SRR1201720 2 0.0237 0.970 0 0.996 0.004
#> SRR1201723 2 0.0237 0.970 0 0.996 0.004
#> SRR1201722 2 0.0237 0.970 0 0.996 0.004
#> SRR1201725 2 0.0000 0.970 0 1.000 0.000
#> SRR1201724 2 0.0000 0.970 0 1.000 0.000
#> SRR1201726 2 0.0237 0.970 0 0.996 0.004
#> SRR1201727 2 0.0237 0.970 0 0.996 0.004
#> SRR1201731 2 0.0237 0.970 0 0.996 0.004
#> SRR1201730 2 0.0237 0.970 0 0.996 0.004
#> SRR1201734 2 0.1753 0.967 0 0.952 0.048
#> SRR1201733 2 0.1753 0.967 0 0.952 0.048
#> SRR1201736 2 0.1031 0.970 0 0.976 0.024
#> SRR1201737 2 0.0000 0.970 0 1.000 0.000
#> SRR1201739 2 0.0000 0.970 0 1.000 0.000
#> SRR1201738 2 0.0000 0.970 0 1.000 0.000
#> SRR1201742 2 0.0237 0.970 0 0.996 0.004
#> SRR1201743 2 0.0237 0.970 0 0.996 0.004
#> SRR1201745 2 0.1753 0.967 0 0.952 0.048
#> SRR1201744 2 0.1753 0.967 0 0.952 0.048
#> SRR1201749 2 0.1753 0.967 0 0.952 0.048
#> SRR1201750 2 0.1753 0.967 0 0.952 0.048
#> SRR1201752 2 0.0237 0.970 0 0.996 0.004
#> SRR1201751 2 0.0237 0.970 0 0.996 0.004
#> SRR1201754 2 0.1643 0.968 0 0.956 0.044
#> SRR1201753 2 0.1753 0.967 0 0.952 0.048
#> SRR1201758 3 0.5397 0.725 0 0.280 0.720
#> SRR1201759 2 0.0237 0.970 0 0.996 0.004
#> SRR1201760 2 0.0237 0.970 0 0.996 0.004
#> SRR1201761 2 0.0237 0.970 0 0.996 0.004
#> SRR1201763 2 0.1643 0.968 0 0.956 0.044
#> SRR1201762 3 0.0000 0.729 0 0.000 1.000
#> SRR1201764 2 0.1753 0.967 0 0.952 0.048
#> SRR1201766 2 0.1753 0.967 0 0.952 0.048
#> SRR1201768 2 0.1753 0.967 0 0.952 0.048
#> SRR1201769 2 0.1753 0.967 0 0.952 0.048
#> SRR1201767 2 0.1753 0.967 0 0.952 0.048
#> SRR1201770 2 0.1753 0.967 0 0.952 0.048
#> SRR1201771 2 0.1753 0.967 0 0.952 0.048
#> SRR1201772 2 0.1753 0.967 0 0.952 0.048
#> SRR1201773 2 0.1753 0.967 0 0.952 0.048
#> SRR1201774 2 0.1753 0.967 0 0.952 0.048
#> SRR1201786 2 0.1753 0.967 0 0.952 0.048
#> SRR1201784 2 0.1753 0.967 0 0.952 0.048
#> SRR1201785 2 0.1753 0.967 0 0.952 0.048
#> SRR1201778 2 0.1753 0.967 0 0.952 0.048
#> SRR1201779 2 0.1753 0.967 0 0.952 0.048
#> SRR1201781 2 0.1753 0.967 0 0.952 0.048
#> SRR1201780 2 0.1753 0.967 0 0.952 0.048
#> SRR1201783 2 0.1753 0.967 0 0.952 0.048
#> SRR1201782 2 0.1753 0.967 0 0.952 0.048
#> SRR1201798 2 0.1753 0.967 0 0.952 0.048
#> SRR1201797 2 0.1753 0.967 0 0.952 0.048
#> SRR1201796 2 0.1753 0.967 0 0.952 0.048
#> SRR1201795 2 0.1753 0.967 0 0.952 0.048
#> SRR1201799 2 0.1753 0.967 0 0.952 0.048
#> SRR1201794 2 0.1753 0.967 0 0.952 0.048
#> SRR1201793 2 0.1753 0.967 0 0.952 0.048
#> SRR1201792 2 0.1753 0.967 0 0.952 0.048
#> SRR1201791 2 0.1753 0.967 0 0.952 0.048
#> SRR1201807 2 0.1753 0.967 0 0.952 0.048
#> SRR1201808 2 0.1753 0.967 0 0.952 0.048
#> SRR1201803 2 0.1753 0.967 0 0.952 0.048
#> SRR1201804 2 0.1753 0.967 0 0.952 0.048
#> SRR1201805 2 0.1753 0.967 0 0.952 0.048
#> SRR1201806 2 0.1753 0.967 0 0.952 0.048
#> SRR1201801 2 0.1753 0.967 0 0.952 0.048
#> SRR1201802 2 0.1753 0.967 0 0.952 0.048
#> SRR1201800 2 0.1753 0.967 0 0.952 0.048
#> SRR1201814 2 0.1753 0.967 0 0.952 0.048
#> SRR1201816 2 0.1753 0.967 0 0.952 0.048
#> SRR1201815 2 0.1753 0.967 0 0.952 0.048
#> SRR1201819 2 0.1753 0.967 0 0.952 0.048
#> SRR1201820 2 0.1753 0.967 0 0.952 0.048
#> SRR1201813 2 0.1753 0.967 0 0.952 0.048
#> SRR1201817 2 0.1753 0.967 0 0.952 0.048
#> SRR1201818 2 0.1753 0.967 0 0.952 0.048
#> SRR1201825 2 0.0237 0.970 0 0.996 0.004
#> SRR1201827 2 0.0000 0.970 0 1.000 0.000
#> SRR1201828 2 0.0000 0.970 0 1.000 0.000
#> SRR1201826 2 0.1753 0.967 0 0.952 0.048
#> SRR1201829 2 0.0000 0.970 0 1.000 0.000
#> SRR1201830 2 0.0000 0.970 0 1.000 0.000
#> SRR1201831 2 0.0000 0.970 0 1.000 0.000
#> SRR1201832 2 0.0000 0.970 0 1.000 0.000
#> SRR1201833 2 0.0000 0.970 0 1.000 0.000
#> SRR1201865 2 0.1643 0.968 0 0.956 0.044
#> SRR1201866 2 0.1643 0.968 0 0.956 0.044
#> SRR1201867 2 0.1643 0.968 0 0.956 0.044
#> SRR1201861 2 0.1643 0.968 0 0.956 0.044
#> SRR1201862 2 0.1643 0.968 0 0.956 0.044
#> SRR1201863 2 0.1643 0.968 0 0.956 0.044
#> SRR1201859 2 0.1753 0.967 0 0.952 0.048
#> SRR1201864 2 0.1643 0.968 0 0.956 0.044
#> SRR1201860 2 0.1643 0.968 0 0.956 0.044
#> SRR1201873 2 0.0237 0.970 0 0.996 0.004
#> SRR1201871 2 0.0237 0.970 0 0.996 0.004
#> SRR1201872 2 0.0237 0.970 0 0.996 0.004
#> SRR1201980 2 0.0237 0.970 0 0.996 0.004
#> SRR1201979 2 0.0237 0.970 0 0.996 0.004
#> SRR1201982 2 0.0237 0.970 0 0.996 0.004
#> SRR1201981 2 0.0237 0.970 0 0.996 0.004
#> SRR1201998 2 0.0000 0.970 0 1.000 0.000
#> SRR1201996 2 0.0000 0.970 0 1.000 0.000
#> SRR1201997 2 0.0000 0.970 0 1.000 0.000
#> SRR1202005 2 0.1753 0.967 0 0.952 0.048
#> SRR1202006 2 0.1753 0.967 0 0.952 0.048
#> SRR1202088 2 0.0237 0.970 0 0.996 0.004
#> SRR1202087 2 0.0237 0.970 0 0.996 0.004
#> SRR1202093 2 0.0237 0.970 0 0.996 0.004
#> SRR1202092 2 0.0237 0.970 0 0.996 0.004
#> SRR1202288 2 0.1753 0.967 0 0.952 0.048
#> SRR1202289 2 0.1753 0.967 0 0.952 0.048
#> SRR1202299 2 0.1753 0.967 0 0.952 0.048
#> SRR1202298 2 0.1753 0.967 0 0.952 0.048
#> SRR1202303 3 0.5363 0.709 0 0.276 0.724
#> SRR1202372 2 0.1753 0.967 0 0.952 0.048
#> SRR1202371 2 0.1753 0.967 0 0.952 0.048
#> SRR1202563 2 0.0747 0.970 0 0.984 0.016
#> SRR1202565 2 0.0000 0.970 0 1.000 0.000
#> SRR1202564 2 0.0000 0.970 0 1.000 0.000
#> SRR1202649 2 0.1753 0.967 0 0.952 0.048
#> SRR1202650 2 0.1753 0.967 0 0.952 0.048
#> SRR1202651 2 0.1753 0.967 0 0.952 0.048
#> SRR1202843 1 0.0000 1.000 1 0.000 0.000
#> SRR1202844 1 0.0000 1.000 1 0.000 0.000
#> SRR1202845 2 0.1753 0.967 0 0.952 0.048
#> SRR1202847 2 0.1753 0.967 0 0.952 0.048
#> SRR1202846 2 0.1753 0.967 0 0.952 0.048
#> SRR1202945 1 0.0000 1.000 1 0.000 0.000
#> SRR1202949 1 0.0000 1.000 1 0.000 0.000
#> SRR1202977 1 0.0000 1.000 1 0.000 0.000
#> SRR1202978 1 0.0000 1.000 1 0.000 0.000
#> SRR1202979 1 0.0000 1.000 1 0.000 0.000
#> SRR1202990 1 0.0000 1.000 1 0.000 0.000
#> SRR1202999 1 0.0000 1.000 1 0.000 0.000
#> SRR1203005 1 0.0000 1.000 1 0.000 0.000
#> SRR1203006 1 0.0000 1.000 1 0.000 0.000
#> SRR1203007 1 0.0000 1.000 1 0.000 0.000
#> SRR1203009 1 0.0000 1.000 1 0.000 0.000
#> SRR1203008 1 0.0000 1.000 1 0.000 0.000
#> SRR1203010 1 0.0000 1.000 1 0.000 0.000
#> SRR1203011 1 0.0000 1.000 1 0.000 0.000
#> SRR1203025 1 0.0000 1.000 1 0.000 0.000
#> SRR1203026 1 0.0000 1.000 1 0.000 0.000
#> SRR1203027 1 0.0000 1.000 1 0.000 0.000
#> SRR1203061 1 0.0000 1.000 1 0.000 0.000
#> SRR1203089 1 0.0000 1.000 1 0.000 0.000
#> SRR1203125 1 0.0000 1.000 1 0.000 0.000
#> SRR1203128 1 0.0000 1.000 1 0.000 0.000
#> SRR1203129 1 0.0000 1.000 1 0.000 0.000
#> SRR1203130 1 0.0000 1.000 1 0.000 0.000
#> SRR1203132 2 0.0237 0.970 0 0.996 0.004
#> SRR1203131 2 0.0237 0.970 0 0.996 0.004
#> SRR1203133 1 0.0000 1.000 1 0.000 0.000
#> SRR1203138 1 0.0000 1.000 1 0.000 0.000
#> SRR1203760 1 0.0000 1.000 1 0.000 0.000
#> SRR1203761 1 0.0000 1.000 1 0.000 0.000
#> SRR1203770 1 0.0000 1.000 1 0.000 0.000
#> SRR1203771 1 0.0000 1.000 1 0.000 0.000
#> SRR1203772 1 0.0000 1.000 1 0.000 0.000
#> SRR1203773 1 0.0000 1.000 1 0.000 0.000
#> SRR1203774 1 0.0000 1.000 1 0.000 0.000
#> SRR1203775 1 0.0000 1.000 1 0.000 0.000
#> SRR1203800 1 0.0000 1.000 1 0.000 0.000
#> SRR1203801 1 0.0000 1.000 1 0.000 0.000
#> SRR1203802 1 0.0000 1.000 1 0.000 0.000
#> SRR1203803 1 0.0000 1.000 1 0.000 0.000
#> SRR1203804 1 0.0000 1.000 1 0.000 0.000
#> SRR1203805 1 0.0000 1.000 1 0.000 0.000
#> SRR1203806 1 0.0000 1.000 1 0.000 0.000
#> SRR1203807 1 0.0000 1.000 1 0.000 0.000
#> SRR1203808 1 0.0000 1.000 1 0.000 0.000
#> SRR1203811 1 0.0000 1.000 1 0.000 0.000
#> SRR1203812 1 0.0000 1.000 1 0.000 0.000
#> SRR1203813 1 0.0000 1.000 1 0.000 0.000
#> SRR1203814 1 0.0000 1.000 1 0.000 0.000
#> SRR1203815 1 0.0000 1.000 1 0.000 0.000
#> SRR1203816 1 0.0000 1.000 1 0.000 0.000
#> SRR1203817 1 0.0000 1.000 1 0.000 0.000
#> SRR1203818 1 0.0000 1.000 1 0.000 0.000
#> SRR1203819 1 0.0000 1.000 1 0.000 0.000
#> SRR1203822 1 0.0000 1.000 1 0.000 0.000
#> SRR1203823 1 0.0000 1.000 1 0.000 0.000
#> SRR1203824 1 0.0000 1.000 1 0.000 0.000
#> SRR1203825 1 0.0000 1.000 1 0.000 0.000
#> SRR1203826 1 0.0000 1.000 1 0.000 0.000
#> SRR1203827 3 0.0237 0.730 0 0.004 0.996
#> SRR1203828 1 0.0000 1.000 1 0.000 0.000
#> SRR1203829 1 0.0000 1.000 1 0.000 0.000
#> SRR1203830 1 0.0000 1.000 1 0.000 0.000
#> SRR1203831 1 0.0000 1.000 1 0.000 0.000
#> SRR1203832 1 0.0000 1.000 1 0.000 0.000
#> SRR1203833 1 0.0000 1.000 1 0.000 0.000
#> SRR1203834 1 0.0000 1.000 1 0.000 0.000
#> SRR1203835 1 0.0000 1.000 1 0.000 0.000
#> SRR1203836 1 0.0000 1.000 1 0.000 0.000
#> SRR1203837 1 0.0000 1.000 1 0.000 0.000
#> SRR1203838 1 0.0000 1.000 1 0.000 0.000
#> SRR1203839 1 0.0000 1.000 1 0.000 0.000
#> SRR1203842 3 0.0237 0.730 0 0.004 0.996
#> SRR1203843 1 0.0000 1.000 1 0.000 0.000
#> SRR1203845 2 0.1753 0.967 0 0.952 0.048
#> SRR1203844 2 0.1753 0.967 0 0.952 0.048
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201590 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201593 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201592 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201617 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201616 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201619 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201618 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201620 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201621 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201623 3 0.4356 0.8114 0.000 0.292 0.708 0.000
#> SRR1201622 3 0.4193 0.8243 0.000 0.268 0.732 0.000
#> SRR1201624 3 0.5938 -0.4850 0.000 0.036 0.488 0.476
#> SRR1201625 3 0.3649 0.7936 0.000 0.204 0.796 0.000
#> SRR1201626 4 0.1867 0.9819 0.000 0.000 0.072 0.928
#> SRR1201627 3 0.5787 0.1929 0.000 0.076 0.680 0.244
#> SRR1201628 3 0.4522 0.7854 0.000 0.320 0.680 0.000
#> SRR1201629 2 0.4994 -0.3784 0.000 0.520 0.480 0.000
#> SRR1201630 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201631 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201641 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201640 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201643 2 0.1940 0.7472 0.000 0.924 0.076 0.000
#> SRR1201644 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201661 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201662 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201663 3 0.3726 0.8046 0.000 0.212 0.788 0.000
#> SRR1201664 3 0.3837 0.8122 0.000 0.224 0.776 0.000
#> SRR1201665 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201666 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201667 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201668 3 0.3726 0.8046 0.000 0.212 0.788 0.000
#> SRR1201670 3 0.3837 0.8122 0.000 0.224 0.776 0.000
#> SRR1201669 3 0.3837 0.8122 0.000 0.224 0.776 0.000
#> SRR1201673 2 0.4961 -0.2686 0.000 0.552 0.448 0.000
#> SRR1201672 2 0.4961 -0.2686 0.000 0.552 0.448 0.000
#> SRR1201671 2 0.4994 -0.3784 0.000 0.520 0.480 0.000
#> SRR1201677 2 0.4961 -0.2686 0.000 0.552 0.448 0.000
#> SRR1201676 2 0.4961 -0.2686 0.000 0.552 0.448 0.000
#> SRR1201675 2 0.4961 -0.2686 0.000 0.552 0.448 0.000
#> SRR1201674 2 0.4961 -0.2686 0.000 0.552 0.448 0.000
#> SRR1201678 2 0.4961 -0.2686 0.000 0.552 0.448 0.000
#> SRR1201682 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201683 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201680 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201681 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201679 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201686 3 0.3726 0.8046 0.000 0.212 0.788 0.000
#> SRR1201687 3 0.3726 0.8046 0.000 0.212 0.788 0.000
#> SRR1201688 3 0.3726 0.8046 0.000 0.212 0.788 0.000
#> SRR1201689 3 0.3726 0.8046 0.000 0.212 0.788 0.000
#> SRR1201685 3 0.3649 0.7936 0.000 0.204 0.796 0.000
#> SRR1201692 2 0.4994 -0.3784 0.000 0.520 0.480 0.000
#> SRR1201691 2 0.4994 -0.3784 0.000 0.520 0.480 0.000
#> SRR1201690 3 0.4907 0.6561 0.000 0.420 0.580 0.000
#> SRR1201696 2 0.4994 -0.3784 0.000 0.520 0.480 0.000
#> SRR1201695 2 0.4994 -0.3784 0.000 0.520 0.480 0.000
#> SRR1201694 2 0.4994 -0.3784 0.000 0.520 0.480 0.000
#> SRR1201693 2 0.4994 -0.3784 0.000 0.520 0.480 0.000
#> SRR1201697 2 0.4994 -0.3784 0.000 0.520 0.480 0.000
#> SRR1201698 2 0.4992 -0.3651 0.000 0.524 0.476 0.000
#> SRR1201700 3 0.4916 0.6642 0.000 0.424 0.576 0.000
#> SRR1201708 3 0.4916 0.6642 0.000 0.424 0.576 0.000
#> SRR1201707 3 0.4916 0.6642 0.000 0.424 0.576 0.000
#> SRR1201706 3 0.4916 0.6642 0.000 0.424 0.576 0.000
#> SRR1201702 3 0.4916 0.6642 0.000 0.424 0.576 0.000
#> SRR1201705 3 0.4916 0.6642 0.000 0.424 0.576 0.000
#> SRR1201701 3 0.4916 0.6642 0.000 0.424 0.576 0.000
#> SRR1201704 3 0.4916 0.6642 0.000 0.424 0.576 0.000
#> SRR1201703 3 0.4916 0.6642 0.000 0.424 0.576 0.000
#> SRR1201716 3 0.4277 0.8248 0.000 0.280 0.720 0.000
#> SRR1201715 3 0.4277 0.8248 0.000 0.280 0.720 0.000
#> SRR1201717 3 0.4277 0.8248 0.000 0.280 0.720 0.000
#> SRR1201712 3 0.4277 0.8248 0.000 0.280 0.720 0.000
#> SRR1201709 3 0.4222 0.8243 0.000 0.272 0.728 0.000
#> SRR1201711 3 0.4277 0.8248 0.000 0.280 0.720 0.000
#> SRR1201714 3 0.4277 0.8248 0.000 0.280 0.720 0.000
#> SRR1201713 3 0.4277 0.8248 0.000 0.280 0.720 0.000
#> SRR1201710 3 0.4277 0.8248 0.000 0.280 0.720 0.000
#> SRR1201719 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201718 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201721 2 0.4994 -0.3784 0.000 0.520 0.480 0.000
#> SRR1201720 3 0.4916 0.6642 0.000 0.424 0.576 0.000
#> SRR1201723 3 0.4164 0.8236 0.000 0.264 0.736 0.000
#> SRR1201722 3 0.3837 0.8122 0.000 0.224 0.776 0.000
#> SRR1201725 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201724 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201726 3 0.4304 0.8224 0.000 0.284 0.716 0.000
#> SRR1201727 3 0.4916 0.6642 0.000 0.424 0.576 0.000
#> SRR1201731 2 0.4961 -0.2686 0.000 0.552 0.448 0.000
#> SRR1201730 2 0.4955 -0.2554 0.000 0.556 0.444 0.000
#> SRR1201734 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201733 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201736 2 0.0336 0.8171 0.000 0.992 0.008 0.000
#> SRR1201737 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201739 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201738 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201742 2 0.2973 0.6421 0.000 0.856 0.144 0.000
#> SRR1201743 2 0.3024 0.6343 0.000 0.852 0.148 0.000
#> SRR1201745 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201744 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201749 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201750 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201752 2 0.4992 -0.3651 0.000 0.524 0.476 0.000
#> SRR1201751 2 0.4994 -0.3784 0.000 0.520 0.480 0.000
#> SRR1201754 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201753 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201758 3 0.5938 -0.4850 0.000 0.036 0.488 0.476
#> SRR1201759 3 0.3649 0.7936 0.000 0.204 0.796 0.000
#> SRR1201760 3 0.4933 0.6445 0.000 0.432 0.568 0.000
#> SRR1201761 3 0.4996 0.4902 0.000 0.484 0.516 0.000
#> SRR1201763 3 0.2921 0.6772 0.000 0.140 0.860 0.000
#> SRR1201762 4 0.2011 0.9804 0.000 0.000 0.080 0.920
#> SRR1201764 2 0.3801 0.5136 0.000 0.780 0.220 0.000
#> SRR1201766 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201768 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201769 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201767 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201770 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201771 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201772 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201773 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201774 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201786 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201784 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201785 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201778 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201779 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201781 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201780 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201783 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201782 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1201798 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201797 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201796 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201795 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201799 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201794 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201793 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201792 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201791 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201807 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201808 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201803 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201804 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201805 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201806 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201801 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201802 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201800 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201814 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201816 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201815 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201819 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201820 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201813 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201817 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201818 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1201825 3 0.4222 0.8243 0.000 0.272 0.728 0.000
#> SRR1201827 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201828 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201826 2 0.2469 0.7020 0.000 0.892 0.108 0.000
#> SRR1201829 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201830 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201831 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201832 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201833 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201865 2 0.4961 -0.1900 0.000 0.552 0.448 0.000
#> SRR1201866 2 0.4961 -0.1900 0.000 0.552 0.448 0.000
#> SRR1201867 2 0.4961 -0.1900 0.000 0.552 0.448 0.000
#> SRR1201861 2 0.4961 -0.1900 0.000 0.552 0.448 0.000
#> SRR1201862 2 0.4961 -0.1900 0.000 0.552 0.448 0.000
#> SRR1201863 2 0.4961 -0.1900 0.000 0.552 0.448 0.000
#> SRR1201859 2 0.5000 -0.3373 0.000 0.500 0.500 0.000
#> SRR1201864 2 0.4961 -0.1900 0.000 0.552 0.448 0.000
#> SRR1201860 2 0.4961 -0.1900 0.000 0.552 0.448 0.000
#> SRR1201873 3 0.4222 0.8243 0.000 0.272 0.728 0.000
#> SRR1201871 3 0.4134 0.8231 0.000 0.260 0.740 0.000
#> SRR1201872 3 0.4222 0.8243 0.000 0.272 0.728 0.000
#> SRR1201980 2 0.4985 -0.3390 0.000 0.532 0.468 0.000
#> SRR1201979 2 0.4994 -0.3784 0.000 0.520 0.480 0.000
#> SRR1201982 2 0.4134 0.3984 0.000 0.740 0.260 0.000
#> SRR1201981 2 0.4972 -0.2976 0.000 0.544 0.456 0.000
#> SRR1201998 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201996 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1201997 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1202005 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1202006 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1202088 3 0.4916 0.6642 0.000 0.424 0.576 0.000
#> SRR1202087 3 0.4304 0.8224 0.000 0.284 0.716 0.000
#> SRR1202093 2 0.2589 0.6825 0.000 0.884 0.116 0.000
#> SRR1202092 2 0.4830 -0.0632 0.000 0.608 0.392 0.000
#> SRR1202288 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1202289 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1202299 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1202298 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1202303 3 0.6158 -0.2333 0.000 0.056 0.560 0.384
#> SRR1202372 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1202371 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1202563 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1202565 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1202564 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1202649 2 0.2868 0.6664 0.000 0.864 0.136 0.000
#> SRR1202650 2 0.0188 0.8185 0.000 0.996 0.004 0.000
#> SRR1202651 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1202843 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1202845 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1202847 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1202846 2 0.0469 0.8140 0.000 0.988 0.012 0.000
#> SRR1202945 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1202977 1 0.0188 0.9868 0.996 0.000 0.004 0.000
#> SRR1202978 1 0.1022 0.9662 0.968 0.000 0.032 0.000
#> SRR1202979 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203061 1 0.2081 0.9216 0.916 0.000 0.084 0.000
#> SRR1203089 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203132 2 0.4961 -0.2686 0.000 0.552 0.448 0.000
#> SRR1203131 2 0.4994 -0.3784 0.000 0.520 0.480 0.000
#> SRR1203133 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203761 1 0.0188 0.9868 0.996 0.000 0.004 0.000
#> SRR1203770 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203774 1 0.2281 0.9105 0.904 0.000 0.096 0.000
#> SRR1203775 1 0.2814 0.8729 0.868 0.000 0.132 0.000
#> SRR1203800 1 0.1792 0.9361 0.932 0.000 0.068 0.000
#> SRR1203801 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203806 1 0.0336 0.9840 0.992 0.000 0.008 0.000
#> SRR1203807 1 0.2281 0.9107 0.904 0.000 0.096 0.000
#> SRR1203808 1 0.1792 0.9355 0.932 0.000 0.068 0.000
#> SRR1203811 1 0.2149 0.9179 0.912 0.000 0.088 0.000
#> SRR1203812 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203827 4 0.0000 0.9823 0.000 0.000 0.000 1.000
#> SRR1203828 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203836 1 0.0188 0.9869 0.996 0.000 0.004 0.000
#> SRR1203837 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9895 1.000 0.000 0.000 0.000
#> SRR1203842 4 0.0000 0.9823 0.000 0.000 0.000 1.000
#> SRR1203843 1 0.2149 0.9184 0.912 0.000 0.088 0.000
#> SRR1203845 2 0.0000 0.8189 0.000 1.000 0.000 0.000
#> SRR1203844 2 0.0000 0.8189 0.000 1.000 0.000 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.2377 0.7260 0.000 0.872 0.128 0.000 0.000
#> SRR1201590 2 0.0880 0.7817 0.000 0.968 0.032 0.000 0.000
#> SRR1201593 2 0.0794 0.7768 0.000 0.972 0.028 0.000 0.000
#> SRR1201592 2 0.0290 0.7816 0.000 0.992 0.008 0.000 0.000
#> SRR1201617 2 0.0794 0.7768 0.000 0.972 0.028 0.000 0.000
#> SRR1201616 2 0.0609 0.7792 0.000 0.980 0.020 0.000 0.000
#> SRR1201619 2 0.2732 0.6963 0.000 0.840 0.160 0.000 0.000
#> SRR1201618 2 0.1952 0.7545 0.000 0.912 0.084 0.000 0.004
#> SRR1201620 2 0.0162 0.7814 0.000 0.996 0.004 0.000 0.000
#> SRR1201621 2 0.0880 0.7757 0.000 0.968 0.032 0.000 0.000
#> SRR1201623 5 0.6004 0.3705 0.000 0.168 0.256 0.000 0.576
#> SRR1201622 5 0.5929 0.4718 0.000 0.156 0.260 0.000 0.584
#> SRR1201624 5 0.5887 -0.2938 0.000 0.028 0.232 0.096 0.644
#> SRR1201625 5 0.2136 0.5947 0.000 0.088 0.008 0.000 0.904
#> SRR1201626 4 0.4972 0.9079 0.000 0.000 0.260 0.672 0.068
#> SRR1201627 5 0.5474 -0.2964 0.000 0.020 0.260 0.064 0.656
#> SRR1201628 5 0.6624 -0.0282 0.000 0.264 0.280 0.000 0.456
#> SRR1201629 3 0.6694 0.8851 0.000 0.292 0.432 0.000 0.276
#> SRR1201630 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201631 2 0.0671 0.7802 0.000 0.980 0.016 0.000 0.004
#> SRR1201641 2 0.4030 0.2988 0.000 0.648 0.352 0.000 0.000
#> SRR1201640 2 0.3508 0.5630 0.000 0.748 0.252 0.000 0.000
#> SRR1201643 2 0.5309 0.1375 0.000 0.576 0.364 0.000 0.060
#> SRR1201644 2 0.4219 0.0555 0.000 0.584 0.416 0.000 0.000
#> SRR1201661 2 0.2377 0.7260 0.000 0.872 0.128 0.000 0.000
#> SRR1201662 2 0.2516 0.7152 0.000 0.860 0.140 0.000 0.000
#> SRR1201663 5 0.2304 0.6016 0.000 0.100 0.008 0.000 0.892
#> SRR1201664 5 0.4879 0.5800 0.000 0.108 0.176 0.000 0.716
#> SRR1201665 2 0.1608 0.7797 0.000 0.928 0.072 0.000 0.000
#> SRR1201666 2 0.2648 0.7035 0.000 0.848 0.152 0.000 0.000
#> SRR1201667 2 0.2648 0.7035 0.000 0.848 0.152 0.000 0.000
#> SRR1201668 5 0.2249 0.6003 0.000 0.096 0.008 0.000 0.896
#> SRR1201670 5 0.4879 0.5800 0.000 0.108 0.176 0.000 0.716
#> SRR1201669 5 0.4879 0.5800 0.000 0.108 0.176 0.000 0.716
#> SRR1201673 3 0.6686 0.8801 0.000 0.316 0.428 0.000 0.256
#> SRR1201672 3 0.6686 0.8801 0.000 0.316 0.428 0.000 0.256
#> SRR1201671 3 0.6701 0.8906 0.000 0.300 0.428 0.000 0.272
#> SRR1201677 3 0.6686 0.8801 0.000 0.316 0.428 0.000 0.256
#> SRR1201676 3 0.6686 0.8801 0.000 0.316 0.428 0.000 0.256
#> SRR1201675 3 0.6686 0.8801 0.000 0.316 0.428 0.000 0.256
#> SRR1201674 3 0.6686 0.8801 0.000 0.316 0.428 0.000 0.256
#> SRR1201678 3 0.6686 0.8801 0.000 0.316 0.428 0.000 0.256
#> SRR1201682 2 0.4045 0.2855 0.000 0.644 0.356 0.000 0.000
#> SRR1201683 2 0.4045 0.2855 0.000 0.644 0.356 0.000 0.000
#> SRR1201680 2 0.4045 0.2855 0.000 0.644 0.356 0.000 0.000
#> SRR1201681 2 0.4045 0.2855 0.000 0.644 0.356 0.000 0.000
#> SRR1201679 2 0.2648 0.7036 0.000 0.848 0.152 0.000 0.000
#> SRR1201686 5 0.2304 0.6016 0.000 0.100 0.008 0.000 0.892
#> SRR1201687 5 0.2304 0.6016 0.000 0.100 0.008 0.000 0.892
#> SRR1201688 5 0.2304 0.6016 0.000 0.100 0.008 0.000 0.892
#> SRR1201689 5 0.2304 0.6016 0.000 0.100 0.008 0.000 0.892
#> SRR1201685 5 0.2628 0.5746 0.000 0.088 0.028 0.000 0.884
#> SRR1201692 3 0.6701 0.8906 0.000 0.300 0.428 0.000 0.272
#> SRR1201691 3 0.6701 0.8906 0.000 0.300 0.428 0.000 0.272
#> SRR1201690 3 0.6659 0.7703 0.000 0.240 0.428 0.000 0.332
#> SRR1201696 3 0.6701 0.8906 0.000 0.300 0.428 0.000 0.272
#> SRR1201695 3 0.6701 0.8906 0.000 0.300 0.428 0.000 0.272
#> SRR1201694 3 0.6701 0.8906 0.000 0.300 0.428 0.000 0.272
#> SRR1201693 3 0.6701 0.8906 0.000 0.300 0.428 0.000 0.272
#> SRR1201697 3 0.6701 0.8906 0.000 0.300 0.428 0.000 0.272
#> SRR1201698 3 0.6699 0.8894 0.000 0.304 0.428 0.000 0.268
#> SRR1201700 3 0.6643 0.7059 0.000 0.224 0.404 0.000 0.372
#> SRR1201708 3 0.6709 0.7853 0.000 0.248 0.400 0.000 0.352
#> SRR1201707 3 0.6709 0.7853 0.000 0.248 0.400 0.000 0.352
#> SRR1201706 3 0.6709 0.7853 0.000 0.248 0.400 0.000 0.352
#> SRR1201702 3 0.6709 0.7853 0.000 0.248 0.400 0.000 0.352
#> SRR1201705 3 0.6709 0.7853 0.000 0.248 0.400 0.000 0.352
#> SRR1201701 3 0.6709 0.7853 0.000 0.248 0.400 0.000 0.352
#> SRR1201704 3 0.6709 0.7853 0.000 0.248 0.400 0.000 0.352
#> SRR1201703 3 0.6709 0.7853 0.000 0.248 0.400 0.000 0.352
#> SRR1201716 5 0.5844 0.4735 0.000 0.156 0.244 0.000 0.600
#> SRR1201715 5 0.5844 0.4735 0.000 0.156 0.244 0.000 0.600
#> SRR1201717 5 0.5844 0.4735 0.000 0.156 0.244 0.000 0.600
#> SRR1201712 5 0.5844 0.4735 0.000 0.156 0.244 0.000 0.600
#> SRR1201709 5 0.5844 0.4735 0.000 0.156 0.244 0.000 0.600
#> SRR1201711 5 0.5844 0.4735 0.000 0.156 0.244 0.000 0.600
#> SRR1201714 5 0.5844 0.4735 0.000 0.156 0.244 0.000 0.600
#> SRR1201713 5 0.5844 0.4735 0.000 0.156 0.244 0.000 0.600
#> SRR1201710 5 0.5844 0.4735 0.000 0.156 0.244 0.000 0.600
#> SRR1201719 2 0.4045 0.2855 0.000 0.644 0.356 0.000 0.000
#> SRR1201718 2 0.4045 0.2855 0.000 0.644 0.356 0.000 0.000
#> SRR1201721 3 0.6705 0.8829 0.000 0.292 0.428 0.000 0.280
#> SRR1201720 3 0.6688 0.7647 0.000 0.240 0.404 0.000 0.356
#> SRR1201723 5 0.5589 0.5127 0.000 0.128 0.244 0.000 0.628
#> SRR1201722 5 0.4844 0.5807 0.000 0.108 0.172 0.000 0.720
#> SRR1201725 2 0.4060 0.2711 0.000 0.640 0.360 0.000 0.000
#> SRR1201724 2 0.4045 0.2855 0.000 0.644 0.356 0.000 0.000
#> SRR1201726 5 0.6338 -0.3380 0.000 0.160 0.392 0.000 0.448
#> SRR1201727 3 0.6669 0.7310 0.000 0.232 0.400 0.000 0.368
#> SRR1201731 3 0.6691 0.8838 0.000 0.312 0.428 0.000 0.260
#> SRR1201730 3 0.6686 0.8797 0.000 0.316 0.428 0.000 0.256
#> SRR1201734 2 0.2377 0.7260 0.000 0.872 0.128 0.000 0.000
#> SRR1201733 2 0.1197 0.7786 0.000 0.952 0.048 0.000 0.000
#> SRR1201736 2 0.2179 0.7529 0.000 0.888 0.112 0.000 0.000
#> SRR1201737 2 0.4074 0.2571 0.000 0.636 0.364 0.000 0.000
#> SRR1201739 2 0.3837 0.4249 0.000 0.692 0.308 0.000 0.000
#> SRR1201738 2 0.3561 0.5371 0.000 0.740 0.260 0.000 0.000
#> SRR1201742 3 0.6325 0.6942 0.000 0.416 0.428 0.000 0.156
#> SRR1201743 3 0.6372 0.7085 0.000 0.408 0.428 0.000 0.164
#> SRR1201745 2 0.0609 0.7792 0.000 0.980 0.020 0.000 0.000
#> SRR1201744 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201749 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201750 2 0.0771 0.7778 0.000 0.976 0.020 0.000 0.004
#> SRR1201752 3 0.6701 0.8906 0.000 0.300 0.428 0.000 0.272
#> SRR1201751 3 0.6692 0.8885 0.000 0.296 0.432 0.000 0.272
#> SRR1201754 2 0.2377 0.7260 0.000 0.872 0.128 0.000 0.000
#> SRR1201753 2 0.0880 0.7757 0.000 0.968 0.032 0.000 0.000
#> SRR1201758 5 0.5421 -0.1664 0.000 0.028 0.176 0.092 0.704
#> SRR1201759 5 0.2136 0.5947 0.000 0.088 0.008 0.000 0.904
#> SRR1201760 3 0.6697 0.7790 0.000 0.244 0.404 0.000 0.352
#> SRR1201761 3 0.6740 0.8223 0.000 0.268 0.404 0.000 0.328
#> SRR1201763 5 0.3780 0.2767 0.000 0.060 0.132 0.000 0.808
#> SRR1201762 4 0.5136 0.9050 0.000 0.000 0.260 0.660 0.080
#> SRR1201764 2 0.4883 0.5384 0.000 0.708 0.200 0.000 0.092
#> SRR1201766 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201768 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201769 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201767 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201770 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201771 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201772 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201773 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201774 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201786 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201784 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201785 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201778 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201779 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201781 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201780 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201783 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201782 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1201798 2 0.2377 0.7260 0.000 0.872 0.128 0.000 0.000
#> SRR1201797 2 0.2377 0.7260 0.000 0.872 0.128 0.000 0.000
#> SRR1201796 2 0.2377 0.7260 0.000 0.872 0.128 0.000 0.000
#> SRR1201795 2 0.2377 0.7260 0.000 0.872 0.128 0.000 0.000
#> SRR1201799 2 0.2377 0.7260 0.000 0.872 0.128 0.000 0.000
#> SRR1201794 2 0.2377 0.7260 0.000 0.872 0.128 0.000 0.000
#> SRR1201793 2 0.2377 0.7260 0.000 0.872 0.128 0.000 0.000
#> SRR1201792 2 0.2377 0.7260 0.000 0.872 0.128 0.000 0.000
#> SRR1201791 2 0.0609 0.7807 0.000 0.980 0.020 0.000 0.000
#> SRR1201807 2 0.0162 0.7820 0.000 0.996 0.000 0.000 0.004
#> SRR1201808 2 0.0162 0.7820 0.000 0.996 0.000 0.000 0.004
#> SRR1201803 2 0.0162 0.7820 0.000 0.996 0.000 0.000 0.004
#> SRR1201804 2 0.0162 0.7820 0.000 0.996 0.000 0.000 0.004
#> SRR1201805 2 0.0162 0.7820 0.000 0.996 0.000 0.000 0.004
#> SRR1201806 2 0.0162 0.7820 0.000 0.996 0.000 0.000 0.004
#> SRR1201801 2 0.0162 0.7820 0.000 0.996 0.000 0.000 0.004
#> SRR1201802 2 0.0162 0.7820 0.000 0.996 0.000 0.000 0.004
#> SRR1201800 2 0.1124 0.7745 0.000 0.960 0.036 0.000 0.004
#> SRR1201814 2 0.0162 0.7820 0.000 0.996 0.000 0.000 0.004
#> SRR1201816 2 0.0162 0.7820 0.000 0.996 0.000 0.000 0.004
#> SRR1201815 2 0.0162 0.7820 0.000 0.996 0.000 0.000 0.004
#> SRR1201819 2 0.0162 0.7820 0.000 0.996 0.000 0.000 0.004
#> SRR1201820 2 0.0162 0.7820 0.000 0.996 0.000 0.000 0.004
#> SRR1201813 2 0.0955 0.7764 0.000 0.968 0.028 0.000 0.004
#> SRR1201817 2 0.0162 0.7820 0.000 0.996 0.000 0.000 0.004
#> SRR1201818 2 0.0162 0.7820 0.000 0.996 0.000 0.000 0.004
#> SRR1201825 5 0.5844 0.4735 0.000 0.156 0.244 0.000 0.600
#> SRR1201827 2 0.4150 0.1771 0.000 0.612 0.388 0.000 0.000
#> SRR1201828 2 0.4150 0.1771 0.000 0.612 0.388 0.000 0.000
#> SRR1201826 2 0.3037 0.7056 0.000 0.860 0.100 0.000 0.040
#> SRR1201829 2 0.4150 0.1771 0.000 0.612 0.388 0.000 0.000
#> SRR1201830 2 0.4150 0.1771 0.000 0.612 0.388 0.000 0.000
#> SRR1201831 2 0.4150 0.1771 0.000 0.612 0.388 0.000 0.000
#> SRR1201832 2 0.4150 0.1771 0.000 0.612 0.388 0.000 0.000
#> SRR1201833 2 0.4150 0.1771 0.000 0.612 0.388 0.000 0.000
#> SRR1201865 2 0.5398 0.4108 0.000 0.648 0.112 0.000 0.240
#> SRR1201866 2 0.5398 0.4108 0.000 0.648 0.112 0.000 0.240
#> SRR1201867 2 0.5398 0.4108 0.000 0.648 0.112 0.000 0.240
#> SRR1201861 2 0.5398 0.4108 0.000 0.648 0.112 0.000 0.240
#> SRR1201862 2 0.5398 0.4108 0.000 0.648 0.112 0.000 0.240
#> SRR1201863 2 0.5398 0.4108 0.000 0.648 0.112 0.000 0.240
#> SRR1201859 2 0.5570 0.3450 0.000 0.608 0.104 0.000 0.288
#> SRR1201864 2 0.5398 0.4108 0.000 0.648 0.112 0.000 0.240
#> SRR1201860 2 0.5398 0.4108 0.000 0.648 0.112 0.000 0.240
#> SRR1201873 5 0.5844 0.4735 0.000 0.156 0.244 0.000 0.600
#> SRR1201871 5 0.5901 0.4894 0.000 0.148 0.268 0.000 0.584
#> SRR1201872 5 0.5844 0.4735 0.000 0.156 0.244 0.000 0.600
#> SRR1201980 3 0.6699 0.8894 0.000 0.304 0.428 0.000 0.268
#> SRR1201979 3 0.6692 0.8885 0.000 0.296 0.432 0.000 0.272
#> SRR1201982 3 0.6527 0.7659 0.000 0.376 0.428 0.000 0.196
#> SRR1201981 3 0.6691 0.8840 0.000 0.312 0.428 0.000 0.260
#> SRR1201998 2 0.4074 0.2571 0.000 0.636 0.364 0.000 0.000
#> SRR1201996 2 0.4074 0.2571 0.000 0.636 0.364 0.000 0.000
#> SRR1201997 2 0.4074 0.2571 0.000 0.636 0.364 0.000 0.000
#> SRR1202005 2 0.2377 0.7260 0.000 0.872 0.128 0.000 0.000
#> SRR1202006 2 0.2377 0.7260 0.000 0.872 0.128 0.000 0.000
#> SRR1202088 3 0.6630 0.6895 0.000 0.220 0.404 0.000 0.376
#> SRR1202087 5 0.6392 -0.4280 0.000 0.168 0.400 0.000 0.432
#> SRR1202093 3 0.6350 0.6867 0.000 0.420 0.420 0.000 0.160
#> SRR1202092 3 0.6678 0.8807 0.000 0.312 0.432 0.000 0.256
#> SRR1202288 2 0.0703 0.7822 0.000 0.976 0.024 0.000 0.000
#> SRR1202289 2 0.2377 0.7260 0.000 0.872 0.128 0.000 0.000
#> SRR1202299 2 0.0000 0.7816 0.000 1.000 0.000 0.000 0.000
#> SRR1202298 2 0.0566 0.7798 0.000 0.984 0.012 0.000 0.004
#> SRR1202303 5 0.5705 -0.3572 0.000 0.016 0.260 0.088 0.636
#> SRR1202372 2 0.0880 0.7757 0.000 0.968 0.032 0.000 0.000
#> SRR1202371 2 0.0955 0.7764 0.000 0.968 0.028 0.000 0.004
#> SRR1202563 2 0.1908 0.7628 0.000 0.908 0.092 0.000 0.000
#> SRR1202565 2 0.4074 0.2571 0.000 0.636 0.364 0.000 0.000
#> SRR1202564 2 0.4074 0.2571 0.000 0.636 0.364 0.000 0.000
#> SRR1202649 2 0.3307 0.6892 0.000 0.844 0.104 0.000 0.052
#> SRR1202650 2 0.2304 0.7418 0.000 0.892 0.100 0.000 0.008
#> SRR1202651 2 0.0794 0.7768 0.000 0.972 0.028 0.000 0.000
#> SRR1202843 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1202845 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1202847 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1202846 2 0.1628 0.7675 0.000 0.936 0.056 0.000 0.008
#> SRR1202945 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0290 0.9745 0.992 0.000 0.008 0.000 0.000
#> SRR1202978 1 0.1571 0.9323 0.936 0.000 0.060 0.000 0.004
#> SRR1202979 1 0.0162 0.9772 0.996 0.000 0.004 0.000 0.000
#> SRR1202990 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.2929 0.8177 0.820 0.000 0.180 0.000 0.000
#> SRR1203089 1 0.0162 0.9772 0.996 0.000 0.004 0.000 0.000
#> SRR1203125 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.6695 0.8869 0.000 0.308 0.428 0.000 0.264
#> SRR1203131 3 0.6692 0.8885 0.000 0.296 0.432 0.000 0.272
#> SRR1203133 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0609 0.9669 0.980 0.000 0.020 0.000 0.000
#> SRR1203770 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.2813 0.8314 0.832 0.000 0.168 0.000 0.000
#> SRR1203775 1 0.4083 0.7168 0.744 0.000 0.228 0.000 0.028
#> SRR1203800 1 0.2280 0.8801 0.880 0.000 0.120 0.000 0.000
#> SRR1203801 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0794 0.9613 0.972 0.000 0.028 0.000 0.000
#> SRR1203807 1 0.3039 0.8044 0.808 0.000 0.192 0.000 0.000
#> SRR1203808 1 0.1732 0.9166 0.920 0.000 0.080 0.000 0.000
#> SRR1203811 1 0.2890 0.8357 0.836 0.000 0.160 0.000 0.004
#> SRR1203812 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203827 4 0.0000 0.9097 0.000 0.000 0.000 1.000 0.000
#> SRR1203828 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0794 0.9608 0.972 0.000 0.028 0.000 0.000
#> SRR1203837 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9798 1.000 0.000 0.000 0.000 0.000
#> SRR1203842 4 0.0000 0.9097 0.000 0.000 0.000 1.000 0.000
#> SRR1203843 1 0.2852 0.8271 0.828 0.000 0.172 0.000 0.000
#> SRR1203845 2 0.2377 0.7260 0.000 0.872 0.128 0.000 0.000
#> SRR1203844 2 0.1608 0.7593 0.000 0.928 0.072 0.000 0.000
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 2 0.2631 0.6573 0.000 0.840 0.152 0.000 0.000 NA
#> SRR1201590 2 0.2608 0.7131 0.000 0.872 0.080 0.000 0.000 NA
#> SRR1201593 2 0.1524 0.7038 0.000 0.932 0.060 0.000 0.000 NA
#> SRR1201592 2 0.0725 0.7196 0.000 0.976 0.012 0.000 0.000 NA
#> SRR1201617 2 0.1152 0.7097 0.000 0.952 0.044 0.000 0.000 NA
#> SRR1201616 2 0.0935 0.7225 0.000 0.964 0.004 0.000 0.000 NA
#> SRR1201619 2 0.3982 0.6396 0.000 0.740 0.200 0.000 0.000 NA
#> SRR1201618 2 0.3855 0.6431 0.000 0.704 0.024 0.000 0.000 NA
#> SRR1201620 2 0.1003 0.7176 0.000 0.964 0.020 0.000 0.000 NA
#> SRR1201621 2 0.2121 0.6894 0.000 0.892 0.096 0.000 0.000 NA
#> SRR1201623 3 0.5083 0.2364 0.000 0.068 0.628 0.000 0.284 NA
#> SRR1201622 3 0.6768 -0.1989 0.000 0.068 0.436 0.000 0.324 NA
#> SRR1201624 5 0.3931 0.2076 0.000 0.016 0.036 0.004 0.776 NA
#> SRR1201625 5 0.4145 0.7699 0.000 0.048 0.252 0.000 0.700 NA
#> SRR1201626 4 0.6031 0.7516 0.000 0.000 0.000 0.404 0.252 NA
#> SRR1201627 5 0.4537 -0.1942 0.000 0.012 0.032 0.000 0.640 NA
#> SRR1201628 3 0.6713 0.1971 0.000 0.120 0.528 0.000 0.168 NA
#> SRR1201629 3 0.2378 0.7136 0.000 0.152 0.848 0.000 0.000 NA
#> SRR1201630 2 0.3351 0.6459 0.000 0.712 0.000 0.000 0.000 NA
#> SRR1201631 2 0.1663 0.7255 0.000 0.912 0.000 0.000 0.000 NA
#> SRR1201641 2 0.4076 0.2609 0.000 0.592 0.396 0.000 0.000 NA
#> SRR1201640 2 0.3816 0.4796 0.000 0.688 0.296 0.000 0.000 NA
#> SRR1201643 2 0.5952 0.1959 0.000 0.424 0.352 0.000 0.000 NA
#> SRR1201644 3 0.4010 0.2732 0.000 0.408 0.584 0.000 0.000 NA
#> SRR1201661 2 0.2768 0.6515 0.000 0.832 0.156 0.000 0.000 NA
#> SRR1201662 2 0.3342 0.5729 0.000 0.760 0.228 0.000 0.000 NA
#> SRR1201663 5 0.4621 0.7616 0.000 0.056 0.256 0.000 0.676 NA
#> SRR1201664 3 0.4897 -0.2538 0.000 0.060 0.492 0.000 0.448 NA
#> SRR1201665 2 0.4030 0.6902 0.000 0.756 0.104 0.000 0.000 NA
#> SRR1201666 2 0.2980 0.6294 0.000 0.808 0.180 0.000 0.000 NA
#> SRR1201667 2 0.2980 0.6294 0.000 0.808 0.180 0.000 0.000 NA
#> SRR1201668 5 0.4261 0.7726 0.000 0.056 0.252 0.000 0.692 NA
#> SRR1201670 3 0.4847 -0.2301 0.000 0.056 0.500 0.000 0.444 NA
#> SRR1201669 3 0.4847 -0.2301 0.000 0.056 0.500 0.000 0.444 NA
#> SRR1201673 3 0.2848 0.7101 0.000 0.176 0.816 0.000 0.000 NA
#> SRR1201672 3 0.2848 0.7101 0.000 0.176 0.816 0.000 0.000 NA
#> SRR1201671 3 0.2454 0.7165 0.000 0.160 0.840 0.000 0.000 NA
#> SRR1201677 3 0.2848 0.7101 0.000 0.176 0.816 0.000 0.000 NA
#> SRR1201676 3 0.2848 0.7101 0.000 0.176 0.816 0.000 0.000 NA
#> SRR1201675 3 0.2848 0.7101 0.000 0.176 0.816 0.000 0.000 NA
#> SRR1201674 3 0.2848 0.7101 0.000 0.176 0.816 0.000 0.000 NA
#> SRR1201678 3 0.2848 0.7101 0.000 0.176 0.816 0.000 0.000 NA
#> SRR1201682 2 0.4057 0.2808 0.000 0.600 0.388 0.000 0.000 NA
#> SRR1201683 2 0.4057 0.2808 0.000 0.600 0.388 0.000 0.000 NA
#> SRR1201680 2 0.4057 0.2808 0.000 0.600 0.388 0.000 0.000 NA
#> SRR1201681 2 0.4057 0.2808 0.000 0.600 0.388 0.000 0.000 NA
#> SRR1201679 2 0.3071 0.6310 0.000 0.804 0.180 0.000 0.000 NA
#> SRR1201686 5 0.4261 0.7726 0.000 0.056 0.252 0.000 0.692 NA
#> SRR1201687 5 0.4261 0.7726 0.000 0.056 0.252 0.000 0.692 NA
#> SRR1201688 5 0.4261 0.7726 0.000 0.056 0.252 0.000 0.692 NA
#> SRR1201689 5 0.4261 0.7726 0.000 0.056 0.252 0.000 0.692 NA
#> SRR1201685 5 0.4636 0.7520 0.000 0.048 0.224 0.000 0.700 NA
#> SRR1201692 3 0.2454 0.7165 0.000 0.160 0.840 0.000 0.000 NA
#> SRR1201691 3 0.2454 0.7165 0.000 0.160 0.840 0.000 0.000 NA
#> SRR1201690 3 0.4385 0.6394 0.000 0.124 0.760 0.000 0.032 NA
#> SRR1201696 3 0.2454 0.7165 0.000 0.160 0.840 0.000 0.000 NA
#> SRR1201695 3 0.2454 0.7165 0.000 0.160 0.840 0.000 0.000 NA
#> SRR1201694 3 0.2454 0.7165 0.000 0.160 0.840 0.000 0.000 NA
#> SRR1201693 3 0.2454 0.7165 0.000 0.160 0.840 0.000 0.000 NA
#> SRR1201697 3 0.2454 0.7165 0.000 0.160 0.840 0.000 0.000 NA
#> SRR1201698 3 0.2595 0.7157 0.000 0.160 0.836 0.000 0.000 NA
#> SRR1201700 3 0.2586 0.6781 0.000 0.100 0.868 0.000 0.032 NA
#> SRR1201708 3 0.2798 0.6870 0.000 0.112 0.852 0.000 0.036 NA
#> SRR1201707 3 0.2798 0.6870 0.000 0.112 0.852 0.000 0.036 NA
#> SRR1201706 3 0.2798 0.6870 0.000 0.112 0.852 0.000 0.036 NA
#> SRR1201702 3 0.2798 0.6870 0.000 0.112 0.852 0.000 0.036 NA
#> SRR1201705 3 0.2798 0.6870 0.000 0.112 0.852 0.000 0.036 NA
#> SRR1201701 3 0.2798 0.6870 0.000 0.112 0.852 0.000 0.036 NA
#> SRR1201704 3 0.2798 0.6870 0.000 0.112 0.852 0.000 0.036 NA
#> SRR1201703 3 0.2798 0.6870 0.000 0.112 0.852 0.000 0.036 NA
#> SRR1201716 3 0.4515 0.2950 0.000 0.064 0.656 0.000 0.280 NA
#> SRR1201715 3 0.4515 0.2950 0.000 0.064 0.656 0.000 0.280 NA
#> SRR1201717 3 0.4515 0.2950 0.000 0.064 0.656 0.000 0.280 NA
#> SRR1201712 3 0.4515 0.2950 0.000 0.064 0.656 0.000 0.280 NA
#> SRR1201709 3 0.5050 0.2370 0.000 0.064 0.628 0.000 0.288 NA
#> SRR1201711 3 0.4515 0.2950 0.000 0.064 0.656 0.000 0.280 NA
#> SRR1201714 3 0.4515 0.2950 0.000 0.064 0.656 0.000 0.280 NA
#> SRR1201713 3 0.4515 0.2950 0.000 0.064 0.656 0.000 0.280 NA
#> SRR1201710 3 0.4515 0.2950 0.000 0.064 0.656 0.000 0.280 NA
#> SRR1201719 2 0.4057 0.2808 0.000 0.600 0.388 0.000 0.000 NA
#> SRR1201718 2 0.4057 0.2816 0.000 0.600 0.388 0.000 0.000 NA
#> SRR1201721 3 0.2482 0.7138 0.000 0.148 0.848 0.000 0.000 NA
#> SRR1201720 3 0.2680 0.6860 0.000 0.108 0.860 0.000 0.032 NA
#> SRR1201723 3 0.4443 0.2491 0.000 0.052 0.648 0.000 0.300 NA
#> SRR1201722 3 0.4852 -0.2540 0.000 0.056 0.492 0.000 0.452 NA
#> SRR1201725 2 0.4084 0.2494 0.000 0.588 0.400 0.000 0.000 NA
#> SRR1201724 2 0.4076 0.2608 0.000 0.592 0.396 0.000 0.000 NA
#> SRR1201726 3 0.4067 0.4248 0.000 0.060 0.728 0.000 0.212 NA
#> SRR1201727 3 0.2706 0.6791 0.000 0.104 0.860 0.000 0.036 NA
#> SRR1201731 3 0.2848 0.7101 0.000 0.176 0.816 0.000 0.000 NA
#> SRR1201730 3 0.2882 0.7077 0.000 0.180 0.812 0.000 0.000 NA
#> SRR1201734 2 0.2730 0.6548 0.000 0.836 0.152 0.000 0.000 NA
#> SRR1201733 2 0.2176 0.7013 0.000 0.896 0.080 0.000 0.000 NA
#> SRR1201736 2 0.4972 0.6291 0.000 0.628 0.116 0.000 0.000 NA
#> SRR1201737 2 0.4123 0.1952 0.000 0.568 0.420 0.000 0.000 NA
#> SRR1201739 2 0.3954 0.3610 0.000 0.636 0.352 0.000 0.000 NA
#> SRR1201738 2 0.3883 0.4043 0.000 0.656 0.332 0.000 0.000 NA
#> SRR1201742 3 0.3421 0.6181 0.000 0.256 0.736 0.000 0.000 NA
#> SRR1201743 3 0.3445 0.6128 0.000 0.260 0.732 0.000 0.000 NA
#> SRR1201745 2 0.1765 0.7243 0.000 0.904 0.000 0.000 0.000 NA
#> SRR1201744 2 0.3266 0.6556 0.000 0.728 0.000 0.000 0.000 NA
#> SRR1201749 2 0.3351 0.6459 0.000 0.712 0.000 0.000 0.000 NA
#> SRR1201750 2 0.1765 0.7234 0.000 0.904 0.000 0.000 0.000 NA
#> SRR1201752 3 0.2595 0.7157 0.000 0.160 0.836 0.000 0.000 NA
#> SRR1201751 3 0.2300 0.7126 0.000 0.144 0.856 0.000 0.000 NA
#> SRR1201754 2 0.2859 0.6521 0.000 0.828 0.156 0.000 0.000 NA
#> SRR1201753 2 0.2112 0.6927 0.000 0.896 0.088 0.000 0.000 NA
#> SRR1201758 5 0.3934 0.3304 0.000 0.016 0.060 0.004 0.792 NA
#> SRR1201759 5 0.4145 0.7699 0.000 0.048 0.252 0.000 0.700 NA
#> SRR1201760 3 0.2726 0.6843 0.000 0.112 0.856 0.000 0.032 NA
#> SRR1201761 3 0.2887 0.6912 0.000 0.120 0.844 0.000 0.036 NA
#> SRR1201763 5 0.3780 0.6420 0.000 0.024 0.156 0.000 0.788 NA
#> SRR1201762 4 0.6071 0.7445 0.000 0.000 0.000 0.392 0.272 NA
#> SRR1201764 2 0.6102 0.4372 0.000 0.508 0.244 0.000 0.016 NA
#> SRR1201766 2 0.3151 0.6634 0.000 0.748 0.000 0.000 0.000 NA
#> SRR1201768 2 0.2823 0.6958 0.000 0.796 0.000 0.000 0.000 NA
#> SRR1201769 2 0.2823 0.6958 0.000 0.796 0.000 0.000 0.000 NA
#> SRR1201767 2 0.2823 0.6958 0.000 0.796 0.000 0.000 0.000 NA
#> SRR1201770 2 0.2823 0.6958 0.000 0.796 0.000 0.000 0.000 NA
#> SRR1201771 2 0.2823 0.6958 0.000 0.796 0.000 0.000 0.000 NA
#> SRR1201772 2 0.2823 0.6958 0.000 0.796 0.000 0.000 0.000 NA
#> SRR1201773 2 0.2823 0.6958 0.000 0.796 0.000 0.000 0.000 NA
#> SRR1201774 2 0.2823 0.6958 0.000 0.796 0.000 0.000 0.000 NA
#> SRR1201786 2 0.2823 0.6958 0.000 0.796 0.000 0.000 0.000 NA
#> SRR1201784 2 0.2823 0.6958 0.000 0.796 0.000 0.000 0.000 NA
#> SRR1201785 2 0.2823 0.6958 0.000 0.796 0.000 0.000 0.000 NA
#> SRR1201778 2 0.3151 0.6634 0.000 0.748 0.000 0.000 0.000 NA
#> SRR1201779 2 0.2823 0.6958 0.000 0.796 0.000 0.000 0.000 NA
#> SRR1201781 2 0.2823 0.6958 0.000 0.796 0.000 0.000 0.000 NA
#> SRR1201780 2 0.2823 0.6958 0.000 0.796 0.000 0.000 0.000 NA
#> SRR1201783 2 0.2823 0.6958 0.000 0.796 0.000 0.000 0.000 NA
#> SRR1201782 2 0.2823 0.6958 0.000 0.796 0.000 0.000 0.000 NA
#> SRR1201798 2 0.2631 0.6573 0.000 0.840 0.152 0.000 0.000 NA
#> SRR1201797 2 0.2631 0.6573 0.000 0.840 0.152 0.000 0.000 NA
#> SRR1201796 2 0.2631 0.6573 0.000 0.840 0.152 0.000 0.000 NA
#> SRR1201795 2 0.2631 0.6573 0.000 0.840 0.152 0.000 0.000 NA
#> SRR1201799 2 0.2631 0.6573 0.000 0.840 0.152 0.000 0.000 NA
#> SRR1201794 2 0.2631 0.6573 0.000 0.840 0.152 0.000 0.000 NA
#> SRR1201793 2 0.2631 0.6573 0.000 0.840 0.152 0.000 0.000 NA
#> SRR1201792 2 0.2631 0.6573 0.000 0.840 0.152 0.000 0.000 NA
#> SRR1201791 2 0.1461 0.7115 0.000 0.940 0.044 0.000 0.000 NA
#> SRR1201807 2 0.1501 0.7266 0.000 0.924 0.000 0.000 0.000 NA
#> SRR1201808 2 0.1501 0.7266 0.000 0.924 0.000 0.000 0.000 NA
#> SRR1201803 2 0.1501 0.7266 0.000 0.924 0.000 0.000 0.000 NA
#> SRR1201804 2 0.1501 0.7266 0.000 0.924 0.000 0.000 0.000 NA
#> SRR1201805 2 0.1501 0.7266 0.000 0.924 0.000 0.000 0.000 NA
#> SRR1201806 2 0.1501 0.7266 0.000 0.924 0.000 0.000 0.000 NA
#> SRR1201801 2 0.1501 0.7266 0.000 0.924 0.000 0.000 0.000 NA
#> SRR1201802 2 0.1501 0.7266 0.000 0.924 0.000 0.000 0.000 NA
#> SRR1201800 2 0.2135 0.7176 0.000 0.872 0.000 0.000 0.000 NA
#> SRR1201814 2 0.1501 0.7266 0.000 0.924 0.000 0.000 0.000 NA
#> SRR1201816 2 0.1501 0.7266 0.000 0.924 0.000 0.000 0.000 NA
#> SRR1201815 2 0.1501 0.7266 0.000 0.924 0.000 0.000 0.000 NA
#> SRR1201819 2 0.1501 0.7266 0.000 0.924 0.000 0.000 0.000 NA
#> SRR1201820 2 0.1501 0.7266 0.000 0.924 0.000 0.000 0.000 NA
#> SRR1201813 2 0.1863 0.7222 0.000 0.896 0.000 0.000 0.000 NA
#> SRR1201817 2 0.1501 0.7266 0.000 0.924 0.000 0.000 0.000 NA
#> SRR1201818 2 0.1501 0.7266 0.000 0.924 0.000 0.000 0.000 NA
#> SRR1201825 3 0.6493 -0.1184 0.000 0.068 0.480 0.000 0.324 NA
#> SRR1201827 3 0.4179 0.0803 0.000 0.472 0.516 0.000 0.000 NA
#> SRR1201828 3 0.4179 0.0803 0.000 0.472 0.516 0.000 0.000 NA
#> SRR1201826 2 0.4692 0.5896 0.000 0.644 0.080 0.000 0.000 NA
#> SRR1201829 3 0.4179 0.0803 0.000 0.472 0.516 0.000 0.000 NA
#> SRR1201830 3 0.4179 0.0803 0.000 0.472 0.516 0.000 0.000 NA
#> SRR1201831 3 0.4179 0.0803 0.000 0.472 0.516 0.000 0.000 NA
#> SRR1201832 3 0.4179 0.0803 0.000 0.472 0.516 0.000 0.000 NA
#> SRR1201833 3 0.4179 0.0803 0.000 0.472 0.516 0.000 0.000 NA
#> SRR1201865 2 0.7380 0.0943 0.000 0.388 0.196 0.000 0.148 NA
#> SRR1201866 2 0.7380 0.0943 0.000 0.388 0.196 0.000 0.148 NA
#> SRR1201867 2 0.7380 0.0943 0.000 0.388 0.196 0.000 0.148 NA
#> SRR1201861 2 0.7380 0.0943 0.000 0.388 0.196 0.000 0.148 NA
#> SRR1201862 2 0.7380 0.0943 0.000 0.388 0.196 0.000 0.148 NA
#> SRR1201863 2 0.7380 0.0943 0.000 0.388 0.196 0.000 0.148 NA
#> SRR1201859 2 0.7374 0.0687 0.000 0.380 0.152 0.000 0.180 NA
#> SRR1201864 2 0.7380 0.0943 0.000 0.388 0.196 0.000 0.148 NA
#> SRR1201860 2 0.7380 0.0943 0.000 0.388 0.196 0.000 0.148 NA
#> SRR1201873 3 0.5367 0.1195 0.000 0.068 0.584 0.000 0.320 NA
#> SRR1201871 3 0.6762 -0.2858 0.000 0.064 0.412 0.000 0.352 NA
#> SRR1201872 3 0.5367 0.1195 0.000 0.068 0.584 0.000 0.320 NA
#> SRR1201980 3 0.2814 0.7114 0.000 0.172 0.820 0.000 0.000 NA
#> SRR1201979 3 0.2454 0.7165 0.000 0.160 0.840 0.000 0.000 NA
#> SRR1201982 3 0.3518 0.6249 0.000 0.256 0.732 0.000 0.000 NA
#> SRR1201981 3 0.2848 0.7101 0.000 0.176 0.816 0.000 0.000 NA
#> SRR1201998 2 0.4141 0.1531 0.000 0.556 0.432 0.000 0.000 NA
#> SRR1201996 2 0.4109 0.2147 0.000 0.576 0.412 0.000 0.000 NA
#> SRR1201997 2 0.4109 0.2147 0.000 0.576 0.412 0.000 0.000 NA
#> SRR1202005 2 0.2730 0.6550 0.000 0.836 0.152 0.000 0.000 NA
#> SRR1202006 2 0.2768 0.6515 0.000 0.832 0.156 0.000 0.000 NA
#> SRR1202088 3 0.2658 0.6745 0.000 0.100 0.864 0.000 0.036 NA
#> SRR1202087 3 0.3730 0.4922 0.000 0.060 0.772 0.000 0.168 NA
#> SRR1202093 3 0.3867 0.5137 0.000 0.328 0.660 0.000 0.000 NA
#> SRR1202092 3 0.2848 0.7095 0.000 0.176 0.816 0.000 0.000 NA
#> SRR1202288 2 0.1572 0.7174 0.000 0.936 0.036 0.000 0.000 NA
#> SRR1202289 2 0.2730 0.6548 0.000 0.836 0.152 0.000 0.000 NA
#> SRR1202299 2 0.1501 0.7266 0.000 0.924 0.000 0.000 0.000 NA
#> SRR1202298 2 0.1556 0.7260 0.000 0.920 0.000 0.000 0.000 NA
#> SRR1202303 5 0.4618 -0.2541 0.000 0.004 0.024 0.016 0.640 NA
#> SRR1202372 2 0.2121 0.6894 0.000 0.892 0.096 0.000 0.000 NA
#> SRR1202371 2 0.2697 0.7049 0.000 0.812 0.000 0.000 0.000 NA
#> SRR1202563 2 0.3806 0.6422 0.000 0.768 0.164 0.000 0.000 NA
#> SRR1202565 2 0.4212 0.1775 0.000 0.560 0.424 0.000 0.000 NA
#> SRR1202564 2 0.4212 0.1775 0.000 0.560 0.424 0.000 0.000 NA
#> SRR1202649 2 0.4552 0.5917 0.000 0.648 0.064 0.000 0.000 NA
#> SRR1202650 2 0.4146 0.6271 0.000 0.676 0.036 0.000 0.000 NA
#> SRR1202651 2 0.1151 0.7124 0.000 0.956 0.032 0.000 0.000 NA
#> SRR1202843 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1202844 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1202845 2 0.3309 0.6471 0.000 0.720 0.000 0.000 0.000 NA
#> SRR1202847 2 0.2823 0.6958 0.000 0.796 0.000 0.000 0.000 NA
#> SRR1202846 2 0.2823 0.6958 0.000 0.796 0.000 0.000 0.000 NA
#> SRR1202945 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1202949 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1202977 1 0.0260 0.9677 0.992 0.000 0.000 0.000 0.000 NA
#> SRR1202978 1 0.2174 0.8920 0.896 0.000 0.008 0.000 0.008 NA
#> SRR1202979 1 0.0146 0.9703 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1202990 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1202999 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203005 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203006 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203007 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203009 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203008 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203010 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203011 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203025 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203026 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203027 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203061 1 0.3643 0.7524 0.768 0.000 0.024 0.000 0.008 NA
#> SRR1203089 1 0.0405 0.9652 0.988 0.000 0.004 0.000 0.000 NA
#> SRR1203125 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203128 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203129 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203130 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203132 3 0.2848 0.7101 0.000 0.176 0.816 0.000 0.000 NA
#> SRR1203131 3 0.2416 0.7160 0.000 0.156 0.844 0.000 0.000 NA
#> SRR1203133 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203138 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203760 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203761 1 0.1219 0.9362 0.948 0.000 0.004 0.000 0.000 NA
#> SRR1203770 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203771 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203772 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203773 1 0.0146 0.9704 0.996 0.000 0.000 0.000 0.004 NA
#> SRR1203774 1 0.3292 0.7729 0.784 0.000 0.008 0.000 0.008 NA
#> SRR1203775 1 0.4908 0.5510 0.644 0.000 0.056 0.000 0.020 NA
#> SRR1203800 1 0.2504 0.8522 0.856 0.000 0.004 0.000 0.004 NA
#> SRR1203801 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203802 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203803 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203804 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203805 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203806 1 0.1010 0.9453 0.960 0.000 0.004 0.000 0.000 NA
#> SRR1203807 1 0.3512 0.7151 0.740 0.000 0.004 0.000 0.008 NA
#> SRR1203808 1 0.2053 0.8814 0.888 0.000 0.000 0.000 0.004 NA
#> SRR1203811 1 0.3121 0.7869 0.796 0.000 0.008 0.000 0.004 NA
#> SRR1203812 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203813 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203814 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203815 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203816 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203817 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203818 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203819 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203822 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203823 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203824 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203825 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203826 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203827 4 0.0000 0.7694 0.000 0.000 0.000 1.000 0.000 NA
#> SRR1203828 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203829 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203830 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203831 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203832 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203833 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203834 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203835 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203836 1 0.0713 0.9543 0.972 0.000 0.000 0.000 0.000 NA
#> SRR1203837 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203838 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203839 1 0.0000 0.9728 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1203842 4 0.0000 0.7694 0.000 0.000 0.000 1.000 0.000 NA
#> SRR1203843 1 0.3243 0.7683 0.780 0.000 0.004 0.000 0.008 NA
#> SRR1203845 2 0.2768 0.6515 0.000 0.832 0.156 0.000 0.000 NA
#> SRR1203844 2 0.2402 0.6749 0.000 0.868 0.120 0.000 0.000 NA
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["ATC", "skmeans"]
# you can also extract it by
# res = res_list["ATC:skmeans"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'ATC' method.
#> Subgroups are detected by 'skmeans' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 2.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.3898 0.611 0.611
#> 3 3 0.806 0.847 0.920 0.2925 0.910 0.853
#> 4 4 0.766 0.795 0.917 0.2847 0.761 0.564
#> 5 5 0.736 0.859 0.910 0.0747 0.893 0.709
#> 6 6 0.733 0.789 0.880 0.0294 0.991 0.968
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 2
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0.000 1.000 0.000 1.000
#> SRR1201590 2 0.000 1.000 0.000 1.000
#> SRR1201593 2 0.000 1.000 0.000 1.000
#> SRR1201592 2 0.000 1.000 0.000 1.000
#> SRR1201617 2 0.000 1.000 0.000 1.000
#> SRR1201616 2 0.000 1.000 0.000 1.000
#> SRR1201619 2 0.000 1.000 0.000 1.000
#> SRR1201618 2 0.000 1.000 0.000 1.000
#> SRR1201620 2 0.000 1.000 0.000 1.000
#> SRR1201621 2 0.000 1.000 0.000 1.000
#> SRR1201623 2 0.000 1.000 0.000 1.000
#> SRR1201622 2 0.000 1.000 0.000 1.000
#> SRR1201624 2 0.000 1.000 0.000 1.000
#> SRR1201625 2 0.000 1.000 0.000 1.000
#> SRR1201626 1 0.000 1.000 1.000 0.000
#> SRR1201627 2 0.000 1.000 0.000 1.000
#> SRR1201628 2 0.000 1.000 0.000 1.000
#> SRR1201629 2 0.000 1.000 0.000 1.000
#> SRR1201630 2 0.000 1.000 0.000 1.000
#> SRR1201631 2 0.000 1.000 0.000 1.000
#> SRR1201641 2 0.000 1.000 0.000 1.000
#> SRR1201640 2 0.000 1.000 0.000 1.000
#> SRR1201643 2 0.000 1.000 0.000 1.000
#> SRR1201644 2 0.000 1.000 0.000 1.000
#> SRR1201661 2 0.000 1.000 0.000 1.000
#> SRR1201662 2 0.000 1.000 0.000 1.000
#> SRR1201663 2 0.000 1.000 0.000 1.000
#> SRR1201664 2 0.000 1.000 0.000 1.000
#> SRR1201665 2 0.000 1.000 0.000 1.000
#> SRR1201666 2 0.000 1.000 0.000 1.000
#> SRR1201667 2 0.000 1.000 0.000 1.000
#> SRR1201668 2 0.000 1.000 0.000 1.000
#> SRR1201670 2 0.000 1.000 0.000 1.000
#> SRR1201669 2 0.000 1.000 0.000 1.000
#> SRR1201673 2 0.000 1.000 0.000 1.000
#> SRR1201672 2 0.000 1.000 0.000 1.000
#> SRR1201671 2 0.000 1.000 0.000 1.000
#> SRR1201677 2 0.000 1.000 0.000 1.000
#> SRR1201676 2 0.000 1.000 0.000 1.000
#> SRR1201675 2 0.000 1.000 0.000 1.000
#> SRR1201674 2 0.000 1.000 0.000 1.000
#> SRR1201678 2 0.000 1.000 0.000 1.000
#> SRR1201682 2 0.000 1.000 0.000 1.000
#> SRR1201683 2 0.000 1.000 0.000 1.000
#> SRR1201680 2 0.000 1.000 0.000 1.000
#> SRR1201681 2 0.000 1.000 0.000 1.000
#> SRR1201679 2 0.000 1.000 0.000 1.000
#> SRR1201686 2 0.000 1.000 0.000 1.000
#> SRR1201687 2 0.000 1.000 0.000 1.000
#> SRR1201688 2 0.000 1.000 0.000 1.000
#> SRR1201689 2 0.000 1.000 0.000 1.000
#> SRR1201685 2 0.000 1.000 0.000 1.000
#> SRR1201692 2 0.000 1.000 0.000 1.000
#> SRR1201691 2 0.000 1.000 0.000 1.000
#> SRR1201690 2 0.000 1.000 0.000 1.000
#> SRR1201696 2 0.000 1.000 0.000 1.000
#> SRR1201695 2 0.000 1.000 0.000 1.000
#> SRR1201694 2 0.000 1.000 0.000 1.000
#> SRR1201693 2 0.000 1.000 0.000 1.000
#> SRR1201697 2 0.000 1.000 0.000 1.000
#> SRR1201698 2 0.000 1.000 0.000 1.000
#> SRR1201700 2 0.000 1.000 0.000 1.000
#> SRR1201708 2 0.000 1.000 0.000 1.000
#> SRR1201707 2 0.000 1.000 0.000 1.000
#> SRR1201706 2 0.000 1.000 0.000 1.000
#> SRR1201702 2 0.000 1.000 0.000 1.000
#> SRR1201705 2 0.000 1.000 0.000 1.000
#> SRR1201701 2 0.000 1.000 0.000 1.000
#> SRR1201704 2 0.000 1.000 0.000 1.000
#> SRR1201703 2 0.000 1.000 0.000 1.000
#> SRR1201716 2 0.000 1.000 0.000 1.000
#> SRR1201715 2 0.000 1.000 0.000 1.000
#> SRR1201717 2 0.000 1.000 0.000 1.000
#> SRR1201712 2 0.000 1.000 0.000 1.000
#> SRR1201709 2 0.000 1.000 0.000 1.000
#> SRR1201711 2 0.000 1.000 0.000 1.000
#> SRR1201714 2 0.000 1.000 0.000 1.000
#> SRR1201713 2 0.000 1.000 0.000 1.000
#> SRR1201710 2 0.000 1.000 0.000 1.000
#> SRR1201719 2 0.000 1.000 0.000 1.000
#> SRR1201718 2 0.000 1.000 0.000 1.000
#> SRR1201721 2 0.000 1.000 0.000 1.000
#> SRR1201720 2 0.000 1.000 0.000 1.000
#> SRR1201723 2 0.000 1.000 0.000 1.000
#> SRR1201722 2 0.000 1.000 0.000 1.000
#> SRR1201725 2 0.000 1.000 0.000 1.000
#> SRR1201724 2 0.000 1.000 0.000 1.000
#> SRR1201726 2 0.000 1.000 0.000 1.000
#> SRR1201727 2 0.000 1.000 0.000 1.000
#> SRR1201731 2 0.000 1.000 0.000 1.000
#> SRR1201730 2 0.000 1.000 0.000 1.000
#> SRR1201734 2 0.000 1.000 0.000 1.000
#> SRR1201733 2 0.000 1.000 0.000 1.000
#> SRR1201736 2 0.000 1.000 0.000 1.000
#> SRR1201737 2 0.000 1.000 0.000 1.000
#> SRR1201739 2 0.000 1.000 0.000 1.000
#> SRR1201738 2 0.000 1.000 0.000 1.000
#> SRR1201742 2 0.000 1.000 0.000 1.000
#> SRR1201743 2 0.000 1.000 0.000 1.000
#> SRR1201745 2 0.000 1.000 0.000 1.000
#> SRR1201744 2 0.000 1.000 0.000 1.000
#> SRR1201749 2 0.000 1.000 0.000 1.000
#> SRR1201750 2 0.000 1.000 0.000 1.000
#> SRR1201752 2 0.000 1.000 0.000 1.000
#> SRR1201751 2 0.000 1.000 0.000 1.000
#> SRR1201754 2 0.000 1.000 0.000 1.000
#> SRR1201753 2 0.000 1.000 0.000 1.000
#> SRR1201758 2 0.000 1.000 0.000 1.000
#> SRR1201759 2 0.000 1.000 0.000 1.000
#> SRR1201760 2 0.000 1.000 0.000 1.000
#> SRR1201761 2 0.000 1.000 0.000 1.000
#> SRR1201763 2 0.000 1.000 0.000 1.000
#> SRR1201762 1 0.000 1.000 1.000 0.000
#> SRR1201764 2 0.000 1.000 0.000 1.000
#> SRR1201766 2 0.000 1.000 0.000 1.000
#> SRR1201768 2 0.000 1.000 0.000 1.000
#> SRR1201769 2 0.000 1.000 0.000 1.000
#> SRR1201767 2 0.000 1.000 0.000 1.000
#> SRR1201770 2 0.000 1.000 0.000 1.000
#> SRR1201771 2 0.000 1.000 0.000 1.000
#> SRR1201772 2 0.000 1.000 0.000 1.000
#> SRR1201773 2 0.000 1.000 0.000 1.000
#> SRR1201774 2 0.000 1.000 0.000 1.000
#> SRR1201786 2 0.000 1.000 0.000 1.000
#> SRR1201784 2 0.000 1.000 0.000 1.000
#> SRR1201785 2 0.000 1.000 0.000 1.000
#> SRR1201778 2 0.000 1.000 0.000 1.000
#> SRR1201779 2 0.000 1.000 0.000 1.000
#> SRR1201781 2 0.000 1.000 0.000 1.000
#> SRR1201780 2 0.000 1.000 0.000 1.000
#> SRR1201783 2 0.000 1.000 0.000 1.000
#> SRR1201782 2 0.000 1.000 0.000 1.000
#> SRR1201798 2 0.000 1.000 0.000 1.000
#> SRR1201797 2 0.000 1.000 0.000 1.000
#> SRR1201796 2 0.000 1.000 0.000 1.000
#> SRR1201795 2 0.000 1.000 0.000 1.000
#> SRR1201799 2 0.000 1.000 0.000 1.000
#> SRR1201794 2 0.000 1.000 0.000 1.000
#> SRR1201793 2 0.000 1.000 0.000 1.000
#> SRR1201792 2 0.000 1.000 0.000 1.000
#> SRR1201791 2 0.000 1.000 0.000 1.000
#> SRR1201807 2 0.000 1.000 0.000 1.000
#> SRR1201808 2 0.000 1.000 0.000 1.000
#> SRR1201803 2 0.000 1.000 0.000 1.000
#> SRR1201804 2 0.000 1.000 0.000 1.000
#> SRR1201805 2 0.000 1.000 0.000 1.000
#> SRR1201806 2 0.000 1.000 0.000 1.000
#> SRR1201801 2 0.000 1.000 0.000 1.000
#> SRR1201802 2 0.000 1.000 0.000 1.000
#> SRR1201800 2 0.000 1.000 0.000 1.000
#> SRR1201814 2 0.000 1.000 0.000 1.000
#> SRR1201816 2 0.000 1.000 0.000 1.000
#> SRR1201815 2 0.000 1.000 0.000 1.000
#> SRR1201819 2 0.000 1.000 0.000 1.000
#> SRR1201820 2 0.000 1.000 0.000 1.000
#> SRR1201813 2 0.000 1.000 0.000 1.000
#> SRR1201817 2 0.000 1.000 0.000 1.000
#> SRR1201818 2 0.000 1.000 0.000 1.000
#> SRR1201825 2 0.000 1.000 0.000 1.000
#> SRR1201827 2 0.000 1.000 0.000 1.000
#> SRR1201828 2 0.000 1.000 0.000 1.000
#> SRR1201826 2 0.000 1.000 0.000 1.000
#> SRR1201829 2 0.000 1.000 0.000 1.000
#> SRR1201830 2 0.000 1.000 0.000 1.000
#> SRR1201831 2 0.000 1.000 0.000 1.000
#> SRR1201832 2 0.000 1.000 0.000 1.000
#> SRR1201833 2 0.000 1.000 0.000 1.000
#> SRR1201865 2 0.000 1.000 0.000 1.000
#> SRR1201866 2 0.000 1.000 0.000 1.000
#> SRR1201867 2 0.000 1.000 0.000 1.000
#> SRR1201861 2 0.000 1.000 0.000 1.000
#> SRR1201862 2 0.000 1.000 0.000 1.000
#> SRR1201863 2 0.000 1.000 0.000 1.000
#> SRR1201859 2 0.000 1.000 0.000 1.000
#> SRR1201864 2 0.000 1.000 0.000 1.000
#> SRR1201860 2 0.000 1.000 0.000 1.000
#> SRR1201873 2 0.000 1.000 0.000 1.000
#> SRR1201871 2 0.000 1.000 0.000 1.000
#> SRR1201872 2 0.000 1.000 0.000 1.000
#> SRR1201980 2 0.000 1.000 0.000 1.000
#> SRR1201979 2 0.000 1.000 0.000 1.000
#> SRR1201982 2 0.000 1.000 0.000 1.000
#> SRR1201981 2 0.000 1.000 0.000 1.000
#> SRR1201998 2 0.000 1.000 0.000 1.000
#> SRR1201996 2 0.000 1.000 0.000 1.000
#> SRR1201997 2 0.000 1.000 0.000 1.000
#> SRR1202005 2 0.000 1.000 0.000 1.000
#> SRR1202006 2 0.000 1.000 0.000 1.000
#> SRR1202088 2 0.000 1.000 0.000 1.000
#> SRR1202087 2 0.000 1.000 0.000 1.000
#> SRR1202093 2 0.000 1.000 0.000 1.000
#> SRR1202092 2 0.000 1.000 0.000 1.000
#> SRR1202288 2 0.000 1.000 0.000 1.000
#> SRR1202289 2 0.000 1.000 0.000 1.000
#> SRR1202299 2 0.000 1.000 0.000 1.000
#> SRR1202298 2 0.000 1.000 0.000 1.000
#> SRR1202303 2 0.118 0.984 0.016 0.984
#> SRR1202372 2 0.000 1.000 0.000 1.000
#> SRR1202371 2 0.000 1.000 0.000 1.000
#> SRR1202563 2 0.000 1.000 0.000 1.000
#> SRR1202565 2 0.000 1.000 0.000 1.000
#> SRR1202564 2 0.000 1.000 0.000 1.000
#> SRR1202649 2 0.000 1.000 0.000 1.000
#> SRR1202650 2 0.000 1.000 0.000 1.000
#> SRR1202651 2 0.000 1.000 0.000 1.000
#> SRR1202843 1 0.000 1.000 1.000 0.000
#> SRR1202844 1 0.000 1.000 1.000 0.000
#> SRR1202845 2 0.000 1.000 0.000 1.000
#> SRR1202847 2 0.000 1.000 0.000 1.000
#> SRR1202846 2 0.000 1.000 0.000 1.000
#> SRR1202945 1 0.000 1.000 1.000 0.000
#> SRR1202949 1 0.000 1.000 1.000 0.000
#> SRR1202977 1 0.000 1.000 1.000 0.000
#> SRR1202978 1 0.000 1.000 1.000 0.000
#> SRR1202979 1 0.000 1.000 1.000 0.000
#> SRR1202990 1 0.000 1.000 1.000 0.000
#> SRR1202999 1 0.000 1.000 1.000 0.000
#> SRR1203005 1 0.000 1.000 1.000 0.000
#> SRR1203006 1 0.000 1.000 1.000 0.000
#> SRR1203007 1 0.000 1.000 1.000 0.000
#> SRR1203009 1 0.000 1.000 1.000 0.000
#> SRR1203008 1 0.000 1.000 1.000 0.000
#> SRR1203010 1 0.000 1.000 1.000 0.000
#> SRR1203011 1 0.000 1.000 1.000 0.000
#> SRR1203025 1 0.000 1.000 1.000 0.000
#> SRR1203026 1 0.000 1.000 1.000 0.000
#> SRR1203027 1 0.000 1.000 1.000 0.000
#> SRR1203061 1 0.000 1.000 1.000 0.000
#> SRR1203089 1 0.000 1.000 1.000 0.000
#> SRR1203125 1 0.000 1.000 1.000 0.000
#> SRR1203128 1 0.000 1.000 1.000 0.000
#> SRR1203129 1 0.000 1.000 1.000 0.000
#> SRR1203130 1 0.000 1.000 1.000 0.000
#> SRR1203132 2 0.000 1.000 0.000 1.000
#> SRR1203131 2 0.000 1.000 0.000 1.000
#> SRR1203133 1 0.000 1.000 1.000 0.000
#> SRR1203138 1 0.000 1.000 1.000 0.000
#> SRR1203760 1 0.000 1.000 1.000 0.000
#> SRR1203761 1 0.000 1.000 1.000 0.000
#> SRR1203770 1 0.000 1.000 1.000 0.000
#> SRR1203771 1 0.000 1.000 1.000 0.000
#> SRR1203772 1 0.000 1.000 1.000 0.000
#> SRR1203773 1 0.000 1.000 1.000 0.000
#> SRR1203774 1 0.000 1.000 1.000 0.000
#> SRR1203775 1 0.000 1.000 1.000 0.000
#> SRR1203800 1 0.000 1.000 1.000 0.000
#> SRR1203801 1 0.000 1.000 1.000 0.000
#> SRR1203802 1 0.000 1.000 1.000 0.000
#> SRR1203803 1 0.000 1.000 1.000 0.000
#> SRR1203804 1 0.000 1.000 1.000 0.000
#> SRR1203805 1 0.000 1.000 1.000 0.000
#> SRR1203806 1 0.000 1.000 1.000 0.000
#> SRR1203807 1 0.000 1.000 1.000 0.000
#> SRR1203808 1 0.000 1.000 1.000 0.000
#> SRR1203811 1 0.000 1.000 1.000 0.000
#> SRR1203812 1 0.000 1.000 1.000 0.000
#> SRR1203813 1 0.000 1.000 1.000 0.000
#> SRR1203814 1 0.000 1.000 1.000 0.000
#> SRR1203815 1 0.000 1.000 1.000 0.000
#> SRR1203816 1 0.000 1.000 1.000 0.000
#> SRR1203817 1 0.000 1.000 1.000 0.000
#> SRR1203818 1 0.000 1.000 1.000 0.000
#> SRR1203819 1 0.000 1.000 1.000 0.000
#> SRR1203822 1 0.000 1.000 1.000 0.000
#> SRR1203823 1 0.000 1.000 1.000 0.000
#> SRR1203824 1 0.000 1.000 1.000 0.000
#> SRR1203825 1 0.000 1.000 1.000 0.000
#> SRR1203826 1 0.000 1.000 1.000 0.000
#> SRR1203827 1 0.000 1.000 1.000 0.000
#> SRR1203828 1 0.000 1.000 1.000 0.000
#> SRR1203829 1 0.000 1.000 1.000 0.000
#> SRR1203830 1 0.000 1.000 1.000 0.000
#> SRR1203831 1 0.000 1.000 1.000 0.000
#> SRR1203832 1 0.000 1.000 1.000 0.000
#> SRR1203833 1 0.000 1.000 1.000 0.000
#> SRR1203834 1 0.000 1.000 1.000 0.000
#> SRR1203835 1 0.000 1.000 1.000 0.000
#> SRR1203836 1 0.000 1.000 1.000 0.000
#> SRR1203837 1 0.000 1.000 1.000 0.000
#> SRR1203838 1 0.000 1.000 1.000 0.000
#> SRR1203839 1 0.000 1.000 1.000 0.000
#> SRR1203842 1 0.000 1.000 1.000 0.000
#> SRR1203843 1 0.000 1.000 1.000 0.000
#> SRR1203845 2 0.000 1.000 0.000 1.000
#> SRR1203844 2 0.000 1.000 0.000 1.000
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201590 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201593 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201592 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201617 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201616 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201619 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201618 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201620 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201621 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201623 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201622 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201624 3 0.1163 0.7058 0.000 0.028 0.972
#> SRR1201625 3 0.5254 0.8946 0.000 0.264 0.736
#> SRR1201626 1 0.1163 0.9735 0.972 0.000 0.028
#> SRR1201627 3 0.0000 0.6683 0.000 0.000 1.000
#> SRR1201628 2 0.2625 0.8207 0.000 0.916 0.084
#> SRR1201629 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201630 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201631 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201641 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201640 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201643 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201644 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201661 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201662 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201663 3 0.5291 0.8959 0.000 0.268 0.732
#> SRR1201664 3 0.5291 0.8959 0.000 0.268 0.732
#> SRR1201665 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201666 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201667 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201668 3 0.5291 0.8959 0.000 0.268 0.732
#> SRR1201670 3 0.5291 0.8959 0.000 0.268 0.732
#> SRR1201669 3 0.5291 0.8959 0.000 0.268 0.732
#> SRR1201673 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201672 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201671 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201677 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201676 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201675 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201674 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201678 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201682 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201683 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201680 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201681 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201679 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201686 3 0.5291 0.8959 0.000 0.268 0.732
#> SRR1201687 3 0.5291 0.8959 0.000 0.268 0.732
#> SRR1201688 3 0.5291 0.8959 0.000 0.268 0.732
#> SRR1201689 3 0.5291 0.8959 0.000 0.268 0.732
#> SRR1201685 3 0.5291 0.8959 0.000 0.268 0.732
#> SRR1201692 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201691 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201690 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201696 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201695 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201694 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201693 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201697 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201698 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201700 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201708 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201707 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201706 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201702 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201705 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201701 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201704 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201703 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201716 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201715 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201717 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201712 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201709 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201711 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201714 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201713 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201710 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201719 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201718 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201721 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201720 2 0.5216 0.5194 0.000 0.740 0.260
#> SRR1201723 3 0.5291 0.8959 0.000 0.268 0.732
#> SRR1201722 3 0.5291 0.8959 0.000 0.268 0.732
#> SRR1201725 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201724 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201726 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201727 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201731 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201730 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201734 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201733 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201736 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201737 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201739 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201738 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201742 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201743 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201745 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201744 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201749 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201750 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201752 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201751 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201754 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201753 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201758 3 0.3412 0.8014 0.000 0.124 0.876
#> SRR1201759 3 0.5254 0.8946 0.000 0.264 0.736
#> SRR1201760 2 0.1529 0.8742 0.000 0.960 0.040
#> SRR1201761 2 0.2356 0.8360 0.000 0.928 0.072
#> SRR1201763 3 0.1163 0.7058 0.000 0.028 0.972
#> SRR1201762 1 0.5363 0.7145 0.724 0.000 0.276
#> SRR1201764 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201766 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201768 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201769 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201767 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201770 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201771 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201772 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201773 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201774 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201786 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201784 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201785 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201778 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201779 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201781 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201780 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201783 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201782 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201798 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201797 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201796 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201795 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201799 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201794 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201793 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201792 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201791 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201807 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201808 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201803 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201804 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201805 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201806 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201801 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201802 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201800 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201814 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201816 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201815 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201819 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201820 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201813 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201817 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201818 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201825 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201827 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201828 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201826 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201829 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201830 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201831 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201832 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201833 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201865 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201866 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201867 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201861 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201862 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201863 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201859 2 0.0592 0.9044 0.000 0.988 0.012
#> SRR1201864 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201860 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201873 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201871 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201872 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1201980 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201979 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201982 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201981 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1201998 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201996 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1201997 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1202005 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1202006 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1202088 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1202087 2 0.6154 0.0968 0.000 0.592 0.408
#> SRR1202093 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1202092 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1202288 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1202289 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1202299 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1202298 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1202303 3 0.0000 0.6683 0.000 0.000 1.000
#> SRR1202372 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1202371 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1202563 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1202565 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1202564 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1202649 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1202650 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1202651 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1202843 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1202845 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1202847 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1202846 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1202945 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203009 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203008 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203010 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203132 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1203131 2 0.0237 0.9117 0.000 0.996 0.004
#> SRR1203133 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203775 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203800 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203807 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203808 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203827 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203828 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203842 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203843 1 0.0000 0.9965 1.000 0.000 0.000
#> SRR1203845 2 0.0000 0.9137 0.000 1.000 0.000
#> SRR1203844 2 0.0000 0.9137 0.000 1.000 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201590 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201593 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201592 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201617 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201616 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201619 2 0.1211 0.909 0.00 0.960 0.040 0.000
#> SRR1201618 2 0.3400 0.737 0.00 0.820 0.180 0.000
#> SRR1201620 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201621 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201623 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201622 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201624 4 0.4477 0.653 0.00 0.000 0.312 0.688
#> SRR1201625 3 0.3528 0.340 0.00 0.000 0.808 0.192
#> SRR1201626 1 0.4134 0.643 0.74 0.000 0.000 0.260
#> SRR1201627 4 0.0000 0.784 0.00 0.000 0.000 1.000
#> SRR1201628 3 0.1474 0.580 0.00 0.052 0.948 0.000
#> SRR1201629 3 0.4830 0.525 0.00 0.392 0.608 0.000
#> SRR1201630 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201631 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201641 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201640 2 0.2530 0.828 0.00 0.888 0.112 0.000
#> SRR1201643 2 0.4624 0.364 0.00 0.660 0.340 0.000
#> SRR1201644 2 0.3528 0.718 0.00 0.808 0.192 0.000
#> SRR1201661 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201662 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201663 3 0.3356 0.368 0.00 0.000 0.824 0.176
#> SRR1201664 3 0.3266 0.381 0.00 0.000 0.832 0.168
#> SRR1201665 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201666 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201667 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201668 3 0.3486 0.347 0.00 0.000 0.812 0.188
#> SRR1201670 3 0.3266 0.381 0.00 0.000 0.832 0.168
#> SRR1201669 3 0.3266 0.381 0.00 0.000 0.832 0.168
#> SRR1201673 3 0.4972 0.404 0.00 0.456 0.544 0.000
#> SRR1201672 3 0.4972 0.404 0.00 0.456 0.544 0.000
#> SRR1201671 3 0.4888 0.496 0.00 0.412 0.588 0.000
#> SRR1201677 3 0.4972 0.404 0.00 0.456 0.544 0.000
#> SRR1201676 3 0.4972 0.404 0.00 0.456 0.544 0.000
#> SRR1201675 3 0.4972 0.404 0.00 0.456 0.544 0.000
#> SRR1201674 3 0.4972 0.404 0.00 0.456 0.544 0.000
#> SRR1201678 3 0.4972 0.404 0.00 0.456 0.544 0.000
#> SRR1201682 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201683 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201680 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201681 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201679 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201686 3 0.3486 0.347 0.00 0.000 0.812 0.188
#> SRR1201687 3 0.3486 0.347 0.00 0.000 0.812 0.188
#> SRR1201688 3 0.3486 0.347 0.00 0.000 0.812 0.188
#> SRR1201689 3 0.3486 0.347 0.00 0.000 0.812 0.188
#> SRR1201685 3 0.3528 0.340 0.00 0.000 0.808 0.192
#> SRR1201692 3 0.4907 0.484 0.00 0.420 0.580 0.000
#> SRR1201691 3 0.4907 0.484 0.00 0.420 0.580 0.000
#> SRR1201690 3 0.3873 0.580 0.00 0.228 0.772 0.000
#> SRR1201696 3 0.4907 0.484 0.00 0.420 0.580 0.000
#> SRR1201695 3 0.4907 0.484 0.00 0.420 0.580 0.000
#> SRR1201694 3 0.4907 0.484 0.00 0.420 0.580 0.000
#> SRR1201693 3 0.4907 0.484 0.00 0.420 0.580 0.000
#> SRR1201697 3 0.4907 0.484 0.00 0.420 0.580 0.000
#> SRR1201698 3 0.4916 0.476 0.00 0.424 0.576 0.000
#> SRR1201700 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201708 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201707 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201706 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201702 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201705 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201701 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201704 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201703 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201716 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201715 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201717 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201712 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201709 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201711 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201714 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201713 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201710 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201719 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201718 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201721 3 0.4761 0.550 0.00 0.372 0.628 0.000
#> SRR1201720 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201723 3 0.2760 0.437 0.00 0.000 0.872 0.128
#> SRR1201722 3 0.3266 0.381 0.00 0.000 0.832 0.168
#> SRR1201725 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201724 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201726 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201727 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201731 3 0.4972 0.404 0.00 0.456 0.544 0.000
#> SRR1201730 3 0.4996 0.322 0.00 0.484 0.516 0.000
#> SRR1201734 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201733 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201736 2 0.3837 0.659 0.00 0.776 0.224 0.000
#> SRR1201737 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201739 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201738 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201742 2 0.4624 0.364 0.00 0.660 0.340 0.000
#> SRR1201743 2 0.3610 0.704 0.00 0.800 0.200 0.000
#> SRR1201745 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201744 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201749 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201750 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201752 3 0.4907 0.484 0.00 0.420 0.580 0.000
#> SRR1201751 3 0.4713 0.565 0.00 0.360 0.640 0.000
#> SRR1201754 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201753 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201758 3 0.4977 -0.327 0.00 0.000 0.540 0.460
#> SRR1201759 3 0.3528 0.340 0.00 0.000 0.808 0.192
#> SRR1201760 3 0.0707 0.580 0.00 0.020 0.980 0.000
#> SRR1201761 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201763 4 0.4331 0.673 0.00 0.000 0.288 0.712
#> SRR1201762 4 0.3801 0.600 0.22 0.000 0.000 0.780
#> SRR1201764 2 0.4877 0.107 0.00 0.592 0.408 0.000
#> SRR1201766 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201768 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201769 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201767 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201770 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201771 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201772 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201773 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201774 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201786 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201784 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201785 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201778 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201779 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201781 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201780 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201783 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201782 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201798 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201797 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201796 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201795 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201799 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201794 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201793 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201792 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201791 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201807 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201808 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201803 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201804 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201805 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201806 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201801 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201802 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201800 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201814 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201816 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201815 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201819 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201820 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201813 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201817 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201818 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201825 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201827 2 0.3486 0.725 0.00 0.812 0.188 0.000
#> SRR1201828 2 0.3486 0.725 0.00 0.812 0.188 0.000
#> SRR1201826 2 0.4277 0.534 0.00 0.720 0.280 0.000
#> SRR1201829 2 0.3486 0.725 0.00 0.812 0.188 0.000
#> SRR1201830 2 0.3486 0.725 0.00 0.812 0.188 0.000
#> SRR1201831 2 0.3486 0.725 0.00 0.812 0.188 0.000
#> SRR1201832 2 0.3486 0.725 0.00 0.812 0.188 0.000
#> SRR1201833 2 0.3486 0.725 0.00 0.812 0.188 0.000
#> SRR1201865 3 0.4477 0.582 0.00 0.312 0.688 0.000
#> SRR1201866 3 0.4454 0.582 0.00 0.308 0.692 0.000
#> SRR1201867 3 0.4477 0.582 0.00 0.312 0.688 0.000
#> SRR1201861 3 0.4454 0.582 0.00 0.308 0.692 0.000
#> SRR1201862 3 0.4477 0.582 0.00 0.312 0.688 0.000
#> SRR1201863 3 0.4477 0.582 0.00 0.312 0.688 0.000
#> SRR1201859 3 0.3266 0.578 0.00 0.168 0.832 0.000
#> SRR1201864 3 0.4454 0.582 0.00 0.308 0.692 0.000
#> SRR1201860 3 0.4454 0.582 0.00 0.308 0.692 0.000
#> SRR1201873 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201871 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201872 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1201980 3 0.4907 0.484 0.00 0.420 0.580 0.000
#> SRR1201979 3 0.4866 0.508 0.00 0.404 0.596 0.000
#> SRR1201982 2 0.4776 0.237 0.00 0.624 0.376 0.000
#> SRR1201981 3 0.4941 0.451 0.00 0.436 0.564 0.000
#> SRR1201998 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201996 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1201997 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1202005 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1202006 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1202088 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1202087 3 0.0000 0.579 0.00 0.000 1.000 0.000
#> SRR1202093 2 0.3569 0.711 0.00 0.804 0.196 0.000
#> SRR1202092 3 0.4999 0.296 0.00 0.492 0.508 0.000
#> SRR1202288 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1202289 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1202299 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1202298 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1202303 4 0.0000 0.784 0.00 0.000 0.000 1.000
#> SRR1202372 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1202371 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1202563 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1202565 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1202564 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1202649 2 0.4500 0.438 0.00 0.684 0.316 0.000
#> SRR1202650 2 0.3486 0.725 0.00 0.812 0.188 0.000
#> SRR1202651 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1202843 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1202845 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1202847 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1202846 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1202945 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203008 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203010 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203132 3 0.4941 0.451 0.00 0.436 0.564 0.000
#> SRR1203131 3 0.4898 0.490 0.00 0.416 0.584 0.000
#> SRR1203133 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203827 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203828 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203842 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203843 1 0.0000 0.996 1.00 0.000 0.000 0.000
#> SRR1203845 2 0.0000 0.949 0.00 1.000 0.000 0.000
#> SRR1203844 2 0.0000 0.949 0.00 1.000 0.000 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1201590 2 0.0794 0.926 0.000 0.972 0.028 0.000 0.000
#> SRR1201593 2 0.0771 0.928 0.000 0.976 0.020 0.000 0.004
#> SRR1201592 2 0.0865 0.928 0.000 0.972 0.024 0.000 0.004
#> SRR1201617 2 0.0771 0.928 0.000 0.976 0.020 0.000 0.004
#> SRR1201616 2 0.0609 0.928 0.000 0.980 0.020 0.000 0.000
#> SRR1201619 2 0.3586 0.673 0.000 0.736 0.264 0.000 0.000
#> SRR1201618 3 0.4161 0.482 0.000 0.392 0.608 0.000 0.000
#> SRR1201620 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1201621 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1201623 3 0.2280 0.650 0.000 0.000 0.880 0.000 0.120
#> SRR1201622 3 0.2561 0.617 0.000 0.000 0.856 0.000 0.144
#> SRR1201624 5 0.5099 -0.303 0.000 0.000 0.052 0.336 0.612
#> SRR1201625 5 0.3928 0.920 0.000 0.000 0.296 0.004 0.700
#> SRR1201626 1 0.4550 0.549 0.688 0.000 0.000 0.276 0.036
#> SRR1201627 4 0.0510 0.840 0.000 0.000 0.000 0.984 0.016
#> SRR1201628 3 0.0912 0.772 0.000 0.016 0.972 0.000 0.012
#> SRR1201629 3 0.1908 0.806 0.000 0.092 0.908 0.000 0.000
#> SRR1201630 2 0.1012 0.927 0.000 0.968 0.020 0.000 0.012
#> SRR1201631 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1201641 2 0.2648 0.837 0.000 0.848 0.152 0.000 0.000
#> SRR1201640 2 0.4015 0.470 0.000 0.652 0.348 0.000 0.000
#> SRR1201643 3 0.2929 0.759 0.000 0.180 0.820 0.000 0.000
#> SRR1201644 3 0.3774 0.636 0.000 0.296 0.704 0.000 0.000
#> SRR1201661 2 0.1478 0.906 0.000 0.936 0.064 0.000 0.000
#> SRR1201662 2 0.0794 0.926 0.000 0.972 0.028 0.000 0.000
#> SRR1201663 5 0.3774 0.919 0.000 0.000 0.296 0.000 0.704
#> SRR1201664 5 0.3774 0.919 0.000 0.000 0.296 0.000 0.704
#> SRR1201665 2 0.2732 0.829 0.000 0.840 0.160 0.000 0.000
#> SRR1201666 2 0.2424 0.856 0.000 0.868 0.132 0.000 0.000
#> SRR1201667 2 0.2424 0.856 0.000 0.868 0.132 0.000 0.000
#> SRR1201668 5 0.3928 0.920 0.000 0.000 0.296 0.004 0.700
#> SRR1201670 5 0.3774 0.919 0.000 0.000 0.296 0.000 0.704
#> SRR1201669 5 0.3774 0.919 0.000 0.000 0.296 0.000 0.704
#> SRR1201673 3 0.2329 0.803 0.000 0.124 0.876 0.000 0.000
#> SRR1201672 3 0.2329 0.803 0.000 0.124 0.876 0.000 0.000
#> SRR1201671 3 0.2074 0.808 0.000 0.104 0.896 0.000 0.000
#> SRR1201677 3 0.2329 0.803 0.000 0.124 0.876 0.000 0.000
#> SRR1201676 3 0.2329 0.803 0.000 0.124 0.876 0.000 0.000
#> SRR1201675 3 0.2329 0.803 0.000 0.124 0.876 0.000 0.000
#> SRR1201674 3 0.2329 0.803 0.000 0.124 0.876 0.000 0.000
#> SRR1201678 3 0.2329 0.803 0.000 0.124 0.876 0.000 0.000
#> SRR1201682 2 0.2516 0.849 0.000 0.860 0.140 0.000 0.000
#> SRR1201683 2 0.2516 0.849 0.000 0.860 0.140 0.000 0.000
#> SRR1201680 2 0.2516 0.849 0.000 0.860 0.140 0.000 0.000
#> SRR1201681 2 0.2516 0.849 0.000 0.860 0.140 0.000 0.000
#> SRR1201679 2 0.2230 0.869 0.000 0.884 0.116 0.000 0.000
#> SRR1201686 5 0.3928 0.920 0.000 0.000 0.296 0.004 0.700
#> SRR1201687 5 0.3928 0.920 0.000 0.000 0.296 0.004 0.700
#> SRR1201688 5 0.3928 0.920 0.000 0.000 0.296 0.004 0.700
#> SRR1201689 5 0.3928 0.920 0.000 0.000 0.296 0.004 0.700
#> SRR1201685 5 0.3906 0.916 0.000 0.000 0.292 0.004 0.704
#> SRR1201692 3 0.2127 0.808 0.000 0.108 0.892 0.000 0.000
#> SRR1201691 3 0.2127 0.808 0.000 0.108 0.892 0.000 0.000
#> SRR1201690 3 0.1124 0.787 0.000 0.036 0.960 0.000 0.004
#> SRR1201696 3 0.2127 0.808 0.000 0.108 0.892 0.000 0.000
#> SRR1201695 3 0.2127 0.808 0.000 0.108 0.892 0.000 0.000
#> SRR1201694 3 0.2127 0.808 0.000 0.108 0.892 0.000 0.000
#> SRR1201693 3 0.2127 0.808 0.000 0.108 0.892 0.000 0.000
#> SRR1201697 3 0.2127 0.808 0.000 0.108 0.892 0.000 0.000
#> SRR1201698 3 0.2179 0.807 0.000 0.112 0.888 0.000 0.000
#> SRR1201700 3 0.0566 0.761 0.000 0.004 0.984 0.000 0.012
#> SRR1201708 3 0.0566 0.761 0.000 0.004 0.984 0.000 0.012
#> SRR1201707 3 0.0566 0.761 0.000 0.004 0.984 0.000 0.012
#> SRR1201706 3 0.0566 0.761 0.000 0.004 0.984 0.000 0.012
#> SRR1201702 3 0.0566 0.761 0.000 0.004 0.984 0.000 0.012
#> SRR1201705 3 0.0566 0.761 0.000 0.004 0.984 0.000 0.012
#> SRR1201701 3 0.0566 0.761 0.000 0.004 0.984 0.000 0.012
#> SRR1201704 3 0.0566 0.761 0.000 0.004 0.984 0.000 0.012
#> SRR1201703 3 0.0566 0.761 0.000 0.004 0.984 0.000 0.012
#> SRR1201716 3 0.2561 0.617 0.000 0.000 0.856 0.000 0.144
#> SRR1201715 3 0.2561 0.617 0.000 0.000 0.856 0.000 0.144
#> SRR1201717 3 0.2561 0.617 0.000 0.000 0.856 0.000 0.144
#> SRR1201712 3 0.2561 0.617 0.000 0.000 0.856 0.000 0.144
#> SRR1201709 3 0.2561 0.617 0.000 0.000 0.856 0.000 0.144
#> SRR1201711 3 0.2561 0.617 0.000 0.000 0.856 0.000 0.144
#> SRR1201714 3 0.2561 0.617 0.000 0.000 0.856 0.000 0.144
#> SRR1201713 3 0.2561 0.617 0.000 0.000 0.856 0.000 0.144
#> SRR1201710 3 0.2561 0.617 0.000 0.000 0.856 0.000 0.144
#> SRR1201719 2 0.2424 0.856 0.000 0.868 0.132 0.000 0.000
#> SRR1201718 2 0.2516 0.849 0.000 0.860 0.140 0.000 0.000
#> SRR1201721 3 0.1608 0.800 0.000 0.072 0.928 0.000 0.000
#> SRR1201720 3 0.0451 0.767 0.000 0.008 0.988 0.000 0.004
#> SRR1201723 5 0.3837 0.897 0.000 0.000 0.308 0.000 0.692
#> SRR1201722 5 0.3774 0.919 0.000 0.000 0.296 0.000 0.704
#> SRR1201725 2 0.2605 0.841 0.000 0.852 0.148 0.000 0.000
#> SRR1201724 2 0.2605 0.841 0.000 0.852 0.148 0.000 0.000
#> SRR1201726 3 0.2471 0.629 0.000 0.000 0.864 0.000 0.136
#> SRR1201727 3 0.0609 0.749 0.000 0.000 0.980 0.000 0.020
#> SRR1201731 3 0.2280 0.804 0.000 0.120 0.880 0.000 0.000
#> SRR1201730 3 0.2377 0.800 0.000 0.128 0.872 0.000 0.000
#> SRR1201734 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1201733 2 0.1544 0.903 0.000 0.932 0.068 0.000 0.000
#> SRR1201736 3 0.3966 0.576 0.000 0.336 0.664 0.000 0.000
#> SRR1201737 2 0.4060 0.441 0.000 0.640 0.360 0.000 0.000
#> SRR1201739 2 0.2329 0.863 0.000 0.876 0.124 0.000 0.000
#> SRR1201738 2 0.2516 0.850 0.000 0.860 0.140 0.000 0.000
#> SRR1201742 3 0.3074 0.744 0.000 0.196 0.804 0.000 0.000
#> SRR1201743 3 0.3561 0.678 0.000 0.260 0.740 0.000 0.000
#> SRR1201745 2 0.0771 0.928 0.000 0.976 0.020 0.000 0.004
#> SRR1201744 2 0.0579 0.926 0.000 0.984 0.008 0.000 0.008
#> SRR1201749 2 0.0609 0.928 0.000 0.980 0.020 0.000 0.000
#> SRR1201750 2 0.0510 0.928 0.000 0.984 0.016 0.000 0.000
#> SRR1201752 3 0.2127 0.808 0.000 0.108 0.892 0.000 0.000
#> SRR1201751 3 0.2011 0.805 0.000 0.088 0.908 0.000 0.004
#> SRR1201754 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1201753 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1201758 5 0.3181 0.331 0.000 0.000 0.072 0.072 0.856
#> SRR1201759 5 0.3928 0.920 0.000 0.000 0.296 0.004 0.700
#> SRR1201760 3 0.0912 0.772 0.000 0.016 0.972 0.000 0.012
#> SRR1201761 3 0.0566 0.761 0.000 0.004 0.984 0.000 0.012
#> SRR1201763 4 0.5117 0.448 0.000 0.000 0.072 0.652 0.276
#> SRR1201762 4 0.3608 0.792 0.040 0.000 0.000 0.812 0.148
#> SRR1201764 3 0.3177 0.732 0.000 0.208 0.792 0.000 0.000
#> SRR1201766 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201768 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201769 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201767 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201770 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201771 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201772 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201773 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201774 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201786 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201784 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201785 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201778 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201779 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201781 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201780 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201783 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201782 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201798 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1201797 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1201796 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1201795 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1201799 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1201794 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1201793 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1201792 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1201791 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1201807 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201808 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201803 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201804 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201805 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201806 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201801 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201802 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201800 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201814 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201816 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201815 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201819 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201820 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201813 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201817 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201818 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1201825 3 0.2561 0.617 0.000 0.000 0.856 0.000 0.144
#> SRR1201827 3 0.3752 0.642 0.000 0.292 0.708 0.000 0.000
#> SRR1201828 3 0.3752 0.642 0.000 0.292 0.708 0.000 0.000
#> SRR1201826 3 0.3452 0.695 0.000 0.244 0.756 0.000 0.000
#> SRR1201829 3 0.3752 0.642 0.000 0.292 0.708 0.000 0.000
#> SRR1201830 3 0.3752 0.642 0.000 0.292 0.708 0.000 0.000
#> SRR1201831 3 0.3752 0.642 0.000 0.292 0.708 0.000 0.000
#> SRR1201832 3 0.3752 0.642 0.000 0.292 0.708 0.000 0.000
#> SRR1201833 3 0.3752 0.642 0.000 0.292 0.708 0.000 0.000
#> SRR1201865 3 0.2959 0.782 0.000 0.100 0.864 0.000 0.036
#> SRR1201866 3 0.2959 0.782 0.000 0.100 0.864 0.000 0.036
#> SRR1201867 3 0.2959 0.782 0.000 0.100 0.864 0.000 0.036
#> SRR1201861 3 0.2959 0.782 0.000 0.100 0.864 0.000 0.036
#> SRR1201862 3 0.2959 0.782 0.000 0.100 0.864 0.000 0.036
#> SRR1201863 3 0.2959 0.782 0.000 0.100 0.864 0.000 0.036
#> SRR1201859 3 0.3176 0.727 0.000 0.064 0.856 0.000 0.080
#> SRR1201864 3 0.2959 0.782 0.000 0.100 0.864 0.000 0.036
#> SRR1201860 3 0.2959 0.782 0.000 0.100 0.864 0.000 0.036
#> SRR1201873 3 0.2561 0.617 0.000 0.000 0.856 0.000 0.144
#> SRR1201871 3 0.2773 0.582 0.000 0.000 0.836 0.000 0.164
#> SRR1201872 3 0.2561 0.617 0.000 0.000 0.856 0.000 0.144
#> SRR1201980 3 0.2179 0.807 0.000 0.112 0.888 0.000 0.000
#> SRR1201979 3 0.2127 0.808 0.000 0.108 0.892 0.000 0.000
#> SRR1201982 3 0.2813 0.769 0.000 0.168 0.832 0.000 0.000
#> SRR1201981 3 0.2230 0.806 0.000 0.116 0.884 0.000 0.000
#> SRR1201998 2 0.2690 0.833 0.000 0.844 0.156 0.000 0.000
#> SRR1201996 2 0.3003 0.795 0.000 0.812 0.188 0.000 0.000
#> SRR1201997 2 0.2561 0.845 0.000 0.856 0.144 0.000 0.000
#> SRR1202005 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1202006 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1202088 3 0.0609 0.749 0.000 0.000 0.980 0.000 0.020
#> SRR1202087 3 0.2230 0.655 0.000 0.000 0.884 0.000 0.116
#> SRR1202093 3 0.3684 0.655 0.000 0.280 0.720 0.000 0.000
#> SRR1202092 3 0.2516 0.792 0.000 0.140 0.860 0.000 0.000
#> SRR1202288 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1202289 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1202299 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1202298 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1202303 4 0.0510 0.840 0.000 0.000 0.000 0.984 0.016
#> SRR1202372 2 0.0609 0.928 0.000 0.980 0.020 0.000 0.000
#> SRR1202371 2 0.0609 0.928 0.000 0.980 0.020 0.000 0.000
#> SRR1202563 2 0.3366 0.728 0.000 0.768 0.232 0.000 0.000
#> SRR1202565 2 0.3636 0.654 0.000 0.728 0.272 0.000 0.000
#> SRR1202564 2 0.3586 0.670 0.000 0.736 0.264 0.000 0.000
#> SRR1202649 3 0.3452 0.696 0.000 0.244 0.756 0.000 0.000
#> SRR1202650 3 0.3932 0.594 0.000 0.328 0.672 0.000 0.000
#> SRR1202651 2 0.0609 0.928 0.000 0.980 0.020 0.000 0.000
#> SRR1202843 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1202845 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1202847 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1202846 2 0.0771 0.923 0.000 0.976 0.000 0.004 0.020
#> SRR1202945 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.2230 0.806 0.000 0.116 0.884 0.000 0.000
#> SRR1203131 3 0.2179 0.807 0.000 0.112 0.888 0.000 0.000
#> SRR1203133 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203827 1 0.0510 0.980 0.984 0.000 0.000 0.000 0.016
#> SRR1203828 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203842 1 0.0404 0.984 0.988 0.000 0.000 0.000 0.012
#> SRR1203843 1 0.0000 0.995 1.000 0.000 0.000 0.000 0.000
#> SRR1203845 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
#> SRR1203844 2 0.0703 0.928 0.000 0.976 0.024 0.000 0.000
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 2 0.139 0.8313 0.000 0.932 0.068 0.000 0.000 0.000
#> SRR1201590 2 0.201 0.8308 0.000 0.904 0.080 0.000 0.000 0.016
#> SRR1201593 2 0.107 0.8315 0.000 0.952 0.048 0.000 0.000 0.000
#> SRR1201592 2 0.153 0.8315 0.000 0.936 0.048 0.000 0.000 0.016
#> SRR1201617 2 0.120 0.8317 0.000 0.944 0.056 0.000 0.000 0.000
#> SRR1201616 2 0.133 0.8316 0.000 0.936 0.064 0.000 0.000 0.000
#> SRR1201619 2 0.400 0.2154 0.000 0.500 0.496 0.000 0.000 0.004
#> SRR1201618 3 0.376 0.5645 0.000 0.284 0.700 0.000 0.000 0.016
#> SRR1201620 2 0.139 0.8313 0.000 0.932 0.068 0.000 0.000 0.000
#> SRR1201621 2 0.139 0.8313 0.000 0.932 0.068 0.000 0.000 0.000
#> SRR1201623 3 0.376 0.4311 0.000 0.000 0.668 0.000 0.324 0.008
#> SRR1201622 3 0.379 0.4157 0.000 0.000 0.660 0.000 0.332 0.008
#> SRR1201624 5 0.585 -0.3867 0.000 0.000 0.000 0.212 0.468 0.320
#> SRR1201625 5 0.222 0.9104 0.000 0.000 0.136 0.000 0.864 0.000
#> SRR1201626 1 0.526 0.4013 0.628 0.000 0.000 0.120 0.012 0.240
#> SRR1201627 4 0.000 0.7410 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201628 3 0.206 0.7366 0.000 0.004 0.904 0.000 0.080 0.012
#> SRR1201629 3 0.101 0.7902 0.000 0.044 0.956 0.000 0.000 0.000
#> SRR1201630 2 0.244 0.8286 0.000 0.884 0.068 0.000 0.000 0.048
#> SRR1201631 2 0.193 0.8331 0.000 0.912 0.068 0.000 0.000 0.020
#> SRR1201641 2 0.368 0.6022 0.000 0.664 0.332 0.000 0.000 0.004
#> SRR1201640 3 0.399 -0.0893 0.000 0.480 0.516 0.000 0.000 0.004
#> SRR1201643 3 0.217 0.7794 0.000 0.100 0.888 0.000 0.000 0.012
#> SRR1201644 3 0.240 0.7516 0.000 0.140 0.856 0.000 0.000 0.004
#> SRR1201661 2 0.260 0.7735 0.000 0.836 0.160 0.000 0.000 0.004
#> SRR1201662 2 0.153 0.8303 0.000 0.928 0.068 0.000 0.000 0.004
#> SRR1201663 5 0.222 0.9104 0.000 0.000 0.136 0.000 0.864 0.000
#> SRR1201664 5 0.222 0.9104 0.000 0.000 0.136 0.000 0.864 0.000
#> SRR1201665 2 0.374 0.5704 0.000 0.648 0.348 0.000 0.000 0.004
#> SRR1201666 2 0.360 0.6307 0.000 0.684 0.312 0.000 0.000 0.004
#> SRR1201667 2 0.360 0.6307 0.000 0.684 0.312 0.000 0.000 0.004
#> SRR1201668 5 0.222 0.9104 0.000 0.000 0.136 0.000 0.864 0.000
#> SRR1201670 5 0.222 0.9104 0.000 0.000 0.136 0.000 0.864 0.000
#> SRR1201669 5 0.222 0.9104 0.000 0.000 0.136 0.000 0.864 0.000
#> SRR1201673 3 0.161 0.7911 0.000 0.084 0.916 0.000 0.000 0.000
#> SRR1201672 3 0.161 0.7911 0.000 0.084 0.916 0.000 0.000 0.000
#> SRR1201671 3 0.139 0.7941 0.000 0.068 0.932 0.000 0.000 0.000
#> SRR1201677 3 0.161 0.7911 0.000 0.084 0.916 0.000 0.000 0.000
#> SRR1201676 3 0.161 0.7911 0.000 0.084 0.916 0.000 0.000 0.000
#> SRR1201675 3 0.161 0.7911 0.000 0.084 0.916 0.000 0.000 0.000
#> SRR1201674 3 0.161 0.7911 0.000 0.084 0.916 0.000 0.000 0.000
#> SRR1201678 3 0.161 0.7911 0.000 0.084 0.916 0.000 0.000 0.000
#> SRR1201682 2 0.360 0.6307 0.000 0.684 0.312 0.000 0.000 0.004
#> SRR1201683 2 0.360 0.6307 0.000 0.684 0.312 0.000 0.000 0.004
#> SRR1201680 2 0.360 0.6307 0.000 0.684 0.312 0.000 0.000 0.004
#> SRR1201681 2 0.360 0.6307 0.000 0.684 0.312 0.000 0.000 0.004
#> SRR1201679 2 0.347 0.6659 0.000 0.712 0.284 0.000 0.000 0.004
#> SRR1201686 5 0.222 0.9104 0.000 0.000 0.136 0.000 0.864 0.000
#> SRR1201687 5 0.222 0.9104 0.000 0.000 0.136 0.000 0.864 0.000
#> SRR1201688 5 0.222 0.9104 0.000 0.000 0.136 0.000 0.864 0.000
#> SRR1201689 5 0.222 0.9104 0.000 0.000 0.136 0.000 0.864 0.000
#> SRR1201685 5 0.236 0.9079 0.000 0.000 0.136 0.000 0.860 0.004
#> SRR1201692 3 0.133 0.7947 0.000 0.064 0.936 0.000 0.000 0.000
#> SRR1201691 3 0.133 0.7947 0.000 0.064 0.936 0.000 0.000 0.000
#> SRR1201690 3 0.142 0.7767 0.000 0.028 0.944 0.000 0.028 0.000
#> SRR1201696 3 0.133 0.7947 0.000 0.064 0.936 0.000 0.000 0.000
#> SRR1201695 3 0.133 0.7947 0.000 0.064 0.936 0.000 0.000 0.000
#> SRR1201694 3 0.133 0.7947 0.000 0.064 0.936 0.000 0.000 0.000
#> SRR1201693 3 0.133 0.7947 0.000 0.064 0.936 0.000 0.000 0.000
#> SRR1201697 3 0.133 0.7947 0.000 0.064 0.936 0.000 0.000 0.000
#> SRR1201698 3 0.144 0.7936 0.000 0.072 0.928 0.000 0.000 0.000
#> SRR1201700 3 0.127 0.7460 0.000 0.000 0.940 0.000 0.060 0.000
#> SRR1201708 3 0.120 0.7488 0.000 0.000 0.944 0.000 0.056 0.000
#> SRR1201707 3 0.120 0.7488 0.000 0.000 0.944 0.000 0.056 0.000
#> SRR1201706 3 0.120 0.7488 0.000 0.000 0.944 0.000 0.056 0.000
#> SRR1201702 3 0.120 0.7488 0.000 0.000 0.944 0.000 0.056 0.000
#> SRR1201705 3 0.120 0.7488 0.000 0.000 0.944 0.000 0.056 0.000
#> SRR1201701 3 0.120 0.7488 0.000 0.000 0.944 0.000 0.056 0.000
#> SRR1201704 3 0.120 0.7488 0.000 0.000 0.944 0.000 0.056 0.000
#> SRR1201703 3 0.120 0.7488 0.000 0.000 0.944 0.000 0.056 0.000
#> SRR1201716 3 0.367 0.4264 0.000 0.000 0.668 0.000 0.328 0.004
#> SRR1201715 3 0.367 0.4264 0.000 0.000 0.668 0.000 0.328 0.004
#> SRR1201717 3 0.367 0.4264 0.000 0.000 0.668 0.000 0.328 0.004
#> SRR1201712 3 0.367 0.4264 0.000 0.000 0.668 0.000 0.328 0.004
#> SRR1201709 3 0.367 0.4264 0.000 0.000 0.668 0.000 0.328 0.004
#> SRR1201711 3 0.367 0.4264 0.000 0.000 0.668 0.000 0.328 0.004
#> SRR1201714 3 0.367 0.4264 0.000 0.000 0.668 0.000 0.328 0.004
#> SRR1201713 3 0.367 0.4264 0.000 0.000 0.668 0.000 0.328 0.004
#> SRR1201710 3 0.367 0.4264 0.000 0.000 0.668 0.000 0.328 0.004
#> SRR1201719 2 0.358 0.6362 0.000 0.688 0.308 0.000 0.000 0.004
#> SRR1201718 2 0.367 0.6056 0.000 0.668 0.328 0.000 0.000 0.004
#> SRR1201721 3 0.079 0.7862 0.000 0.032 0.968 0.000 0.000 0.000
#> SRR1201720 3 0.114 0.7507 0.000 0.000 0.948 0.000 0.052 0.000
#> SRR1201723 5 0.273 0.8115 0.000 0.000 0.192 0.000 0.808 0.000
#> SRR1201722 5 0.222 0.9104 0.000 0.000 0.136 0.000 0.864 0.000
#> SRR1201725 2 0.364 0.6187 0.000 0.676 0.320 0.000 0.000 0.004
#> SRR1201724 2 0.364 0.6187 0.000 0.676 0.320 0.000 0.000 0.004
#> SRR1201726 3 0.348 0.4541 0.000 0.000 0.684 0.000 0.316 0.000
#> SRR1201727 3 0.133 0.7432 0.000 0.000 0.936 0.000 0.064 0.000
#> SRR1201731 3 0.175 0.7900 0.000 0.084 0.912 0.000 0.000 0.004
#> SRR1201730 3 0.161 0.7911 0.000 0.084 0.916 0.000 0.000 0.000
#> SRR1201734 2 0.153 0.8303 0.000 0.928 0.068 0.000 0.000 0.004
#> SRR1201733 2 0.270 0.7644 0.000 0.824 0.172 0.000 0.000 0.004
#> SRR1201736 3 0.311 0.6594 0.000 0.224 0.772 0.000 0.000 0.004
#> SRR1201737 3 0.395 0.0507 0.000 0.432 0.564 0.000 0.000 0.004
#> SRR1201739 2 0.351 0.6569 0.000 0.704 0.292 0.000 0.000 0.004
#> SRR1201738 2 0.367 0.6055 0.000 0.668 0.328 0.000 0.000 0.004
#> SRR1201742 3 0.200 0.7735 0.000 0.116 0.884 0.000 0.000 0.000
#> SRR1201743 3 0.218 0.7609 0.000 0.132 0.868 0.000 0.000 0.000
#> SRR1201745 2 0.107 0.8314 0.000 0.952 0.048 0.000 0.000 0.000
#> SRR1201744 2 0.115 0.8296 0.000 0.956 0.032 0.000 0.000 0.012
#> SRR1201749 2 0.155 0.8322 0.000 0.936 0.044 0.000 0.000 0.020
#> SRR1201750 2 0.158 0.8328 0.000 0.928 0.064 0.000 0.000 0.008
#> SRR1201752 3 0.133 0.7947 0.000 0.064 0.936 0.000 0.000 0.000
#> SRR1201751 3 0.107 0.7914 0.000 0.048 0.952 0.000 0.000 0.000
#> SRR1201754 2 0.153 0.8303 0.000 0.928 0.068 0.000 0.000 0.004
#> SRR1201753 2 0.153 0.8303 0.000 0.928 0.068 0.000 0.000 0.004
#> SRR1201758 5 0.414 0.1671 0.000 0.000 0.012 0.016 0.680 0.292
#> SRR1201759 5 0.222 0.9104 0.000 0.000 0.136 0.000 0.864 0.000
#> SRR1201760 3 0.153 0.7395 0.000 0.000 0.928 0.000 0.068 0.004
#> SRR1201761 3 0.147 0.7417 0.000 0.000 0.932 0.000 0.064 0.004
#> SRR1201763 4 0.257 0.5374 0.000 0.000 0.012 0.852 0.136 0.000
#> SRR1201762 6 0.401 0.0000 0.016 0.000 0.000 0.308 0.004 0.672
#> SRR1201764 3 0.252 0.7486 0.000 0.152 0.844 0.000 0.000 0.004
#> SRR1201766 2 0.186 0.8102 0.000 0.896 0.000 0.000 0.000 0.104
#> SRR1201768 2 0.186 0.8102 0.000 0.896 0.000 0.000 0.000 0.104
#> SRR1201769 2 0.186 0.8102 0.000 0.896 0.000 0.000 0.000 0.104
#> SRR1201767 2 0.186 0.8102 0.000 0.896 0.000 0.000 0.000 0.104
#> SRR1201770 2 0.186 0.8102 0.000 0.896 0.000 0.000 0.000 0.104
#> SRR1201771 2 0.186 0.8102 0.000 0.896 0.000 0.000 0.000 0.104
#> SRR1201772 2 0.186 0.8102 0.000 0.896 0.000 0.000 0.000 0.104
#> SRR1201773 2 0.186 0.8102 0.000 0.896 0.000 0.000 0.000 0.104
#> SRR1201774 2 0.186 0.8102 0.000 0.896 0.000 0.000 0.000 0.104
#> SRR1201786 2 0.186 0.8102 0.000 0.896 0.000 0.000 0.000 0.104
#> SRR1201784 2 0.186 0.8102 0.000 0.896 0.000 0.000 0.000 0.104
#> SRR1201785 2 0.186 0.8102 0.000 0.896 0.000 0.000 0.000 0.104
#> SRR1201778 2 0.186 0.8102 0.000 0.896 0.000 0.000 0.000 0.104
#> SRR1201779 2 0.186 0.8102 0.000 0.896 0.000 0.000 0.000 0.104
#> SRR1201781 2 0.186 0.8102 0.000 0.896 0.000 0.000 0.000 0.104
#> SRR1201780 2 0.186 0.8102 0.000 0.896 0.000 0.000 0.000 0.104
#> SRR1201783 2 0.186 0.8102 0.000 0.896 0.000 0.000 0.000 0.104
#> SRR1201782 2 0.186 0.8102 0.000 0.896 0.000 0.000 0.000 0.104
#> SRR1201798 2 0.139 0.8313 0.000 0.932 0.068 0.000 0.000 0.000
#> SRR1201797 2 0.139 0.8313 0.000 0.932 0.068 0.000 0.000 0.000
#> SRR1201796 2 0.139 0.8313 0.000 0.932 0.068 0.000 0.000 0.000
#> SRR1201795 2 0.139 0.8313 0.000 0.932 0.068 0.000 0.000 0.000
#> SRR1201799 2 0.139 0.8313 0.000 0.932 0.068 0.000 0.000 0.000
#> SRR1201794 2 0.139 0.8313 0.000 0.932 0.068 0.000 0.000 0.000
#> SRR1201793 2 0.139 0.8313 0.000 0.932 0.068 0.000 0.000 0.000
#> SRR1201792 2 0.139 0.8313 0.000 0.932 0.068 0.000 0.000 0.000
#> SRR1201791 2 0.139 0.8313 0.000 0.932 0.068 0.000 0.000 0.000
#> SRR1201807 2 0.166 0.8151 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201808 2 0.166 0.8151 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201803 2 0.166 0.8151 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201804 2 0.166 0.8151 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201805 2 0.166 0.8151 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201806 2 0.166 0.8151 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201801 2 0.166 0.8151 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201802 2 0.166 0.8151 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201800 2 0.166 0.8151 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1201814 2 0.181 0.8117 0.000 0.900 0.000 0.000 0.000 0.100
#> SRR1201816 2 0.181 0.8117 0.000 0.900 0.000 0.000 0.000 0.100
#> SRR1201815 2 0.181 0.8117 0.000 0.900 0.000 0.000 0.000 0.100
#> SRR1201819 2 0.181 0.8117 0.000 0.900 0.000 0.000 0.000 0.100
#> SRR1201820 2 0.181 0.8117 0.000 0.900 0.000 0.000 0.000 0.100
#> SRR1201813 2 0.176 0.8130 0.000 0.904 0.000 0.000 0.000 0.096
#> SRR1201817 2 0.181 0.8117 0.000 0.900 0.000 0.000 0.000 0.100
#> SRR1201818 2 0.181 0.8117 0.000 0.900 0.000 0.000 0.000 0.100
#> SRR1201825 3 0.372 0.4473 0.000 0.000 0.676 0.000 0.316 0.008
#> SRR1201827 3 0.252 0.7437 0.000 0.152 0.844 0.000 0.000 0.004
#> SRR1201828 3 0.252 0.7437 0.000 0.152 0.844 0.000 0.000 0.004
#> SRR1201826 3 0.223 0.7662 0.000 0.124 0.872 0.000 0.000 0.004
#> SRR1201829 3 0.252 0.7437 0.000 0.152 0.844 0.000 0.000 0.004
#> SRR1201830 3 0.252 0.7437 0.000 0.152 0.844 0.000 0.000 0.004
#> SRR1201831 3 0.252 0.7437 0.000 0.152 0.844 0.000 0.000 0.004
#> SRR1201832 3 0.252 0.7437 0.000 0.152 0.844 0.000 0.000 0.004
#> SRR1201833 3 0.252 0.7437 0.000 0.152 0.844 0.000 0.000 0.004
#> SRR1201865 3 0.457 0.6706 0.000 0.084 0.732 0.000 0.160 0.024
#> SRR1201866 3 0.457 0.6706 0.000 0.084 0.732 0.000 0.160 0.024
#> SRR1201867 3 0.457 0.6706 0.000 0.084 0.732 0.000 0.160 0.024
#> SRR1201861 3 0.457 0.6706 0.000 0.084 0.732 0.000 0.160 0.024
#> SRR1201862 3 0.457 0.6706 0.000 0.084 0.732 0.000 0.160 0.024
#> SRR1201863 3 0.457 0.6706 0.000 0.084 0.732 0.000 0.160 0.024
#> SRR1201859 3 0.501 0.5715 0.000 0.072 0.676 0.000 0.220 0.032
#> SRR1201864 3 0.457 0.6706 0.000 0.084 0.732 0.000 0.160 0.024
#> SRR1201860 3 0.457 0.6706 0.000 0.084 0.732 0.000 0.160 0.024
#> SRR1201873 3 0.377 0.4235 0.000 0.000 0.664 0.000 0.328 0.008
#> SRR1201871 3 0.390 0.3403 0.000 0.000 0.628 0.000 0.364 0.008
#> SRR1201872 3 0.377 0.4235 0.000 0.000 0.664 0.000 0.328 0.008
#> SRR1201980 3 0.144 0.7936 0.000 0.072 0.928 0.000 0.000 0.000
#> SRR1201979 3 0.114 0.7925 0.000 0.052 0.948 0.000 0.000 0.000
#> SRR1201982 3 0.186 0.7861 0.000 0.092 0.904 0.000 0.000 0.004
#> SRR1201981 3 0.170 0.7916 0.000 0.080 0.916 0.000 0.000 0.004
#> SRR1201998 2 0.385 0.5081 0.000 0.612 0.384 0.000 0.000 0.004
#> SRR1201996 2 0.394 0.4226 0.000 0.572 0.424 0.000 0.000 0.004
#> SRR1201997 2 0.358 0.6364 0.000 0.688 0.308 0.000 0.000 0.004
#> SRR1202005 2 0.153 0.8303 0.000 0.928 0.068 0.000 0.000 0.004
#> SRR1202006 2 0.153 0.8303 0.000 0.928 0.068 0.000 0.000 0.004
#> SRR1202088 3 0.139 0.7412 0.000 0.000 0.932 0.000 0.068 0.000
#> SRR1202087 3 0.341 0.4802 0.000 0.000 0.700 0.000 0.300 0.000
#> SRR1202093 3 0.234 0.7502 0.000 0.148 0.852 0.000 0.000 0.000
#> SRR1202092 3 0.161 0.7911 0.000 0.084 0.916 0.000 0.000 0.000
#> SRR1202288 2 0.139 0.8313 0.000 0.932 0.068 0.000 0.000 0.000
#> SRR1202289 2 0.139 0.8313 0.000 0.932 0.068 0.000 0.000 0.000
#> SRR1202299 2 0.166 0.8151 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1202298 2 0.166 0.8151 0.000 0.912 0.000 0.000 0.000 0.088
#> SRR1202303 4 0.000 0.7410 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1202372 2 0.139 0.8313 0.000 0.932 0.068 0.000 0.000 0.000
#> SRR1202371 2 0.107 0.8316 0.000 0.952 0.048 0.000 0.000 0.000
#> SRR1202563 2 0.383 0.5116 0.000 0.620 0.376 0.000 0.000 0.004
#> SRR1202565 2 0.395 0.3709 0.000 0.564 0.432 0.000 0.000 0.004
#> SRR1202564 2 0.392 0.4156 0.000 0.580 0.416 0.000 0.000 0.004
#> SRR1202649 3 0.261 0.7656 0.000 0.136 0.852 0.000 0.004 0.008
#> SRR1202650 3 0.305 0.7166 0.000 0.168 0.812 0.000 0.000 0.020
#> SRR1202651 2 0.153 0.8303 0.000 0.928 0.068 0.000 0.000 0.004
#> SRR1202843 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202845 2 0.176 0.8148 0.000 0.904 0.000 0.000 0.000 0.096
#> SRR1202847 2 0.161 0.8168 0.000 0.916 0.000 0.000 0.000 0.084
#> SRR1202846 2 0.161 0.8168 0.000 0.916 0.000 0.000 0.000 0.084
#> SRR1202945 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.159 0.7933 0.000 0.072 0.924 0.000 0.000 0.004
#> SRR1203131 3 0.133 0.7945 0.000 0.064 0.936 0.000 0.000 0.000
#> SRR1203133 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203827 1 0.205 0.8715 0.888 0.000 0.000 0.000 0.004 0.108
#> SRR1203828 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203842 1 0.101 0.9535 0.960 0.000 0.000 0.000 0.004 0.036
#> SRR1203843 1 0.000 0.9927 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203845 2 0.153 0.8303 0.000 0.928 0.068 0.000 0.000 0.004
#> SRR1203844 2 0.153 0.8303 0.000 0.928 0.068 0.000 0.000 0.004
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["ATC", "pam"]
# you can also extract it by
# res = res_list["ATC:pam"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'ATC' method.
#> Subgroups are detected by 'pam' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 5.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.3762 0.625 0.625
#> 3 3 0.730 0.891 0.934 0.7147 0.726 0.561
#> 4 4 0.843 0.906 0.930 0.1502 0.826 0.550
#> 5 5 0.941 0.901 0.943 0.0330 0.981 0.927
#> 6 6 0.871 0.835 0.883 0.0356 0.954 0.810
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 5
#> attr(,"optional")
#> [1] 2
There is also optional best \(k\) = 2 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0.000 1.000 0.000 1.000
#> SRR1201590 2 0.000 1.000 0.000 1.000
#> SRR1201593 2 0.000 1.000 0.000 1.000
#> SRR1201592 2 0.000 1.000 0.000 1.000
#> SRR1201617 2 0.000 1.000 0.000 1.000
#> SRR1201616 2 0.000 1.000 0.000 1.000
#> SRR1201619 2 0.000 1.000 0.000 1.000
#> SRR1201618 2 0.000 1.000 0.000 1.000
#> SRR1201620 2 0.000 1.000 0.000 1.000
#> SRR1201621 2 0.000 1.000 0.000 1.000
#> SRR1201623 2 0.000 1.000 0.000 1.000
#> SRR1201622 2 0.000 1.000 0.000 1.000
#> SRR1201624 2 0.000 1.000 0.000 1.000
#> SRR1201625 2 0.000 1.000 0.000 1.000
#> SRR1201626 2 0.000 1.000 0.000 1.000
#> SRR1201627 2 0.000 1.000 0.000 1.000
#> SRR1201628 2 0.000 1.000 0.000 1.000
#> SRR1201629 2 0.000 1.000 0.000 1.000
#> SRR1201630 2 0.000 1.000 0.000 1.000
#> SRR1201631 2 0.000 1.000 0.000 1.000
#> SRR1201641 2 0.000 1.000 0.000 1.000
#> SRR1201640 2 0.000 1.000 0.000 1.000
#> SRR1201643 2 0.000 1.000 0.000 1.000
#> SRR1201644 2 0.000 1.000 0.000 1.000
#> SRR1201661 2 0.000 1.000 0.000 1.000
#> SRR1201662 2 0.000 1.000 0.000 1.000
#> SRR1201663 2 0.000 1.000 0.000 1.000
#> SRR1201664 2 0.000 1.000 0.000 1.000
#> SRR1201665 2 0.000 1.000 0.000 1.000
#> SRR1201666 2 0.000 1.000 0.000 1.000
#> SRR1201667 2 0.000 1.000 0.000 1.000
#> SRR1201668 2 0.000 1.000 0.000 1.000
#> SRR1201670 2 0.000 1.000 0.000 1.000
#> SRR1201669 2 0.000 1.000 0.000 1.000
#> SRR1201673 2 0.000 1.000 0.000 1.000
#> SRR1201672 2 0.000 1.000 0.000 1.000
#> SRR1201671 2 0.000 1.000 0.000 1.000
#> SRR1201677 2 0.000 1.000 0.000 1.000
#> SRR1201676 2 0.000 1.000 0.000 1.000
#> SRR1201675 2 0.000 1.000 0.000 1.000
#> SRR1201674 2 0.000 1.000 0.000 1.000
#> SRR1201678 2 0.000 1.000 0.000 1.000
#> SRR1201682 2 0.000 1.000 0.000 1.000
#> SRR1201683 2 0.000 1.000 0.000 1.000
#> SRR1201680 2 0.000 1.000 0.000 1.000
#> SRR1201681 2 0.000 1.000 0.000 1.000
#> SRR1201679 2 0.000 1.000 0.000 1.000
#> SRR1201686 2 0.000 1.000 0.000 1.000
#> SRR1201687 2 0.000 1.000 0.000 1.000
#> SRR1201688 2 0.000 1.000 0.000 1.000
#> SRR1201689 2 0.000 1.000 0.000 1.000
#> SRR1201685 2 0.000 1.000 0.000 1.000
#> SRR1201692 2 0.000 1.000 0.000 1.000
#> SRR1201691 2 0.000 1.000 0.000 1.000
#> SRR1201690 2 0.000 1.000 0.000 1.000
#> SRR1201696 2 0.000 1.000 0.000 1.000
#> SRR1201695 2 0.000 1.000 0.000 1.000
#> SRR1201694 2 0.000 1.000 0.000 1.000
#> SRR1201693 2 0.000 1.000 0.000 1.000
#> SRR1201697 2 0.000 1.000 0.000 1.000
#> SRR1201698 2 0.000 1.000 0.000 1.000
#> SRR1201700 2 0.000 1.000 0.000 1.000
#> SRR1201708 2 0.000 1.000 0.000 1.000
#> SRR1201707 2 0.000 1.000 0.000 1.000
#> SRR1201706 2 0.000 1.000 0.000 1.000
#> SRR1201702 2 0.000 1.000 0.000 1.000
#> SRR1201705 2 0.000 1.000 0.000 1.000
#> SRR1201701 2 0.000 1.000 0.000 1.000
#> SRR1201704 2 0.000 1.000 0.000 1.000
#> SRR1201703 2 0.000 1.000 0.000 1.000
#> SRR1201716 2 0.000 1.000 0.000 1.000
#> SRR1201715 2 0.000 1.000 0.000 1.000
#> SRR1201717 2 0.000 1.000 0.000 1.000
#> SRR1201712 2 0.000 1.000 0.000 1.000
#> SRR1201709 2 0.000 1.000 0.000 1.000
#> SRR1201711 2 0.000 1.000 0.000 1.000
#> SRR1201714 2 0.000 1.000 0.000 1.000
#> SRR1201713 2 0.000 1.000 0.000 1.000
#> SRR1201710 2 0.000 1.000 0.000 1.000
#> SRR1201719 2 0.000 1.000 0.000 1.000
#> SRR1201718 2 0.000 1.000 0.000 1.000
#> SRR1201721 2 0.000 1.000 0.000 1.000
#> SRR1201720 2 0.000 1.000 0.000 1.000
#> SRR1201723 2 0.000 1.000 0.000 1.000
#> SRR1201722 2 0.000 1.000 0.000 1.000
#> SRR1201725 2 0.000 1.000 0.000 1.000
#> SRR1201724 2 0.000 1.000 0.000 1.000
#> SRR1201726 2 0.000 1.000 0.000 1.000
#> SRR1201727 2 0.000 1.000 0.000 1.000
#> SRR1201731 2 0.000 1.000 0.000 1.000
#> SRR1201730 2 0.000 1.000 0.000 1.000
#> SRR1201734 2 0.000 1.000 0.000 1.000
#> SRR1201733 2 0.000 1.000 0.000 1.000
#> SRR1201736 2 0.000 1.000 0.000 1.000
#> SRR1201737 2 0.000 1.000 0.000 1.000
#> SRR1201739 2 0.000 1.000 0.000 1.000
#> SRR1201738 2 0.000 1.000 0.000 1.000
#> SRR1201742 2 0.000 1.000 0.000 1.000
#> SRR1201743 2 0.000 1.000 0.000 1.000
#> SRR1201745 2 0.000 1.000 0.000 1.000
#> SRR1201744 2 0.000 1.000 0.000 1.000
#> SRR1201749 2 0.000 1.000 0.000 1.000
#> SRR1201750 2 0.000 1.000 0.000 1.000
#> SRR1201752 2 0.000 1.000 0.000 1.000
#> SRR1201751 2 0.000 1.000 0.000 1.000
#> SRR1201754 2 0.000 1.000 0.000 1.000
#> SRR1201753 2 0.000 1.000 0.000 1.000
#> SRR1201758 2 0.000 1.000 0.000 1.000
#> SRR1201759 2 0.000 1.000 0.000 1.000
#> SRR1201760 2 0.000 1.000 0.000 1.000
#> SRR1201761 2 0.000 1.000 0.000 1.000
#> SRR1201763 2 0.000 1.000 0.000 1.000
#> SRR1201762 2 0.000 1.000 0.000 1.000
#> SRR1201764 2 0.000 1.000 0.000 1.000
#> SRR1201766 2 0.000 1.000 0.000 1.000
#> SRR1201768 2 0.000 1.000 0.000 1.000
#> SRR1201769 2 0.000 1.000 0.000 1.000
#> SRR1201767 2 0.000 1.000 0.000 1.000
#> SRR1201770 2 0.000 1.000 0.000 1.000
#> SRR1201771 2 0.000 1.000 0.000 1.000
#> SRR1201772 2 0.000 1.000 0.000 1.000
#> SRR1201773 2 0.000 1.000 0.000 1.000
#> SRR1201774 2 0.000 1.000 0.000 1.000
#> SRR1201786 2 0.000 1.000 0.000 1.000
#> SRR1201784 2 0.000 1.000 0.000 1.000
#> SRR1201785 2 0.000 1.000 0.000 1.000
#> SRR1201778 2 0.000 1.000 0.000 1.000
#> SRR1201779 2 0.000 1.000 0.000 1.000
#> SRR1201781 2 0.000 1.000 0.000 1.000
#> SRR1201780 2 0.000 1.000 0.000 1.000
#> SRR1201783 2 0.000 1.000 0.000 1.000
#> SRR1201782 2 0.000 1.000 0.000 1.000
#> SRR1201798 2 0.000 1.000 0.000 1.000
#> SRR1201797 2 0.000 1.000 0.000 1.000
#> SRR1201796 2 0.000 1.000 0.000 1.000
#> SRR1201795 2 0.000 1.000 0.000 1.000
#> SRR1201799 2 0.000 1.000 0.000 1.000
#> SRR1201794 2 0.000 1.000 0.000 1.000
#> SRR1201793 2 0.000 1.000 0.000 1.000
#> SRR1201792 2 0.000 1.000 0.000 1.000
#> SRR1201791 2 0.000 1.000 0.000 1.000
#> SRR1201807 2 0.000 1.000 0.000 1.000
#> SRR1201808 2 0.000 1.000 0.000 1.000
#> SRR1201803 2 0.000 1.000 0.000 1.000
#> SRR1201804 2 0.000 1.000 0.000 1.000
#> SRR1201805 2 0.000 1.000 0.000 1.000
#> SRR1201806 2 0.000 1.000 0.000 1.000
#> SRR1201801 2 0.000 1.000 0.000 1.000
#> SRR1201802 2 0.000 1.000 0.000 1.000
#> SRR1201800 2 0.000 1.000 0.000 1.000
#> SRR1201814 2 0.000 1.000 0.000 1.000
#> SRR1201816 2 0.000 1.000 0.000 1.000
#> SRR1201815 2 0.000 1.000 0.000 1.000
#> SRR1201819 2 0.000 1.000 0.000 1.000
#> SRR1201820 2 0.000 1.000 0.000 1.000
#> SRR1201813 2 0.000 1.000 0.000 1.000
#> SRR1201817 2 0.000 1.000 0.000 1.000
#> SRR1201818 2 0.000 1.000 0.000 1.000
#> SRR1201825 2 0.000 1.000 0.000 1.000
#> SRR1201827 2 0.000 1.000 0.000 1.000
#> SRR1201828 2 0.000 1.000 0.000 1.000
#> SRR1201826 2 0.000 1.000 0.000 1.000
#> SRR1201829 2 0.000 1.000 0.000 1.000
#> SRR1201830 2 0.000 1.000 0.000 1.000
#> SRR1201831 2 0.000 1.000 0.000 1.000
#> SRR1201832 2 0.000 1.000 0.000 1.000
#> SRR1201833 2 0.000 1.000 0.000 1.000
#> SRR1201865 2 0.000 1.000 0.000 1.000
#> SRR1201866 2 0.000 1.000 0.000 1.000
#> SRR1201867 2 0.000 1.000 0.000 1.000
#> SRR1201861 2 0.000 1.000 0.000 1.000
#> SRR1201862 2 0.000 1.000 0.000 1.000
#> SRR1201863 2 0.000 1.000 0.000 1.000
#> SRR1201859 2 0.000 1.000 0.000 1.000
#> SRR1201864 2 0.000 1.000 0.000 1.000
#> SRR1201860 2 0.000 1.000 0.000 1.000
#> SRR1201873 2 0.000 1.000 0.000 1.000
#> SRR1201871 2 0.000 1.000 0.000 1.000
#> SRR1201872 2 0.000 1.000 0.000 1.000
#> SRR1201980 2 0.000 1.000 0.000 1.000
#> SRR1201979 2 0.000 1.000 0.000 1.000
#> SRR1201982 2 0.000 1.000 0.000 1.000
#> SRR1201981 2 0.000 1.000 0.000 1.000
#> SRR1201998 2 0.000 1.000 0.000 1.000
#> SRR1201996 2 0.000 1.000 0.000 1.000
#> SRR1201997 2 0.000 1.000 0.000 1.000
#> SRR1202005 2 0.000 1.000 0.000 1.000
#> SRR1202006 2 0.000 1.000 0.000 1.000
#> SRR1202088 2 0.000 1.000 0.000 1.000
#> SRR1202087 2 0.000 1.000 0.000 1.000
#> SRR1202093 2 0.000 1.000 0.000 1.000
#> SRR1202092 2 0.000 1.000 0.000 1.000
#> SRR1202288 2 0.000 1.000 0.000 1.000
#> SRR1202289 2 0.000 1.000 0.000 1.000
#> SRR1202299 2 0.000 1.000 0.000 1.000
#> SRR1202298 2 0.000 1.000 0.000 1.000
#> SRR1202303 2 0.000 1.000 0.000 1.000
#> SRR1202372 2 0.000 1.000 0.000 1.000
#> SRR1202371 2 0.000 1.000 0.000 1.000
#> SRR1202563 2 0.000 1.000 0.000 1.000
#> SRR1202565 2 0.000 1.000 0.000 1.000
#> SRR1202564 2 0.000 1.000 0.000 1.000
#> SRR1202649 2 0.000 1.000 0.000 1.000
#> SRR1202650 2 0.000 1.000 0.000 1.000
#> SRR1202651 2 0.000 1.000 0.000 1.000
#> SRR1202843 1 0.000 1.000 1.000 0.000
#> SRR1202844 1 0.000 1.000 1.000 0.000
#> SRR1202845 2 0.000 1.000 0.000 1.000
#> SRR1202847 2 0.000 1.000 0.000 1.000
#> SRR1202846 2 0.000 1.000 0.000 1.000
#> SRR1202945 1 0.000 1.000 1.000 0.000
#> SRR1202949 1 0.000 1.000 1.000 0.000
#> SRR1202977 1 0.000 1.000 1.000 0.000
#> SRR1202978 1 0.000 1.000 1.000 0.000
#> SRR1202979 1 0.000 1.000 1.000 0.000
#> SRR1202990 1 0.000 1.000 1.000 0.000
#> SRR1202999 1 0.000 1.000 1.000 0.000
#> SRR1203005 1 0.000 1.000 1.000 0.000
#> SRR1203006 1 0.000 1.000 1.000 0.000
#> SRR1203007 1 0.000 1.000 1.000 0.000
#> SRR1203009 1 0.000 1.000 1.000 0.000
#> SRR1203008 1 0.000 1.000 1.000 0.000
#> SRR1203010 1 0.000 1.000 1.000 0.000
#> SRR1203011 1 0.000 1.000 1.000 0.000
#> SRR1203025 1 0.000 1.000 1.000 0.000
#> SRR1203026 1 0.000 1.000 1.000 0.000
#> SRR1203027 1 0.000 1.000 1.000 0.000
#> SRR1203061 1 0.000 1.000 1.000 0.000
#> SRR1203089 1 0.000 1.000 1.000 0.000
#> SRR1203125 1 0.000 1.000 1.000 0.000
#> SRR1203128 1 0.000 1.000 1.000 0.000
#> SRR1203129 1 0.000 1.000 1.000 0.000
#> SRR1203130 1 0.000 1.000 1.000 0.000
#> SRR1203132 2 0.000 1.000 0.000 1.000
#> SRR1203131 2 0.000 1.000 0.000 1.000
#> SRR1203133 1 0.000 1.000 1.000 0.000
#> SRR1203138 1 0.000 1.000 1.000 0.000
#> SRR1203760 1 0.000 1.000 1.000 0.000
#> SRR1203761 1 0.000 1.000 1.000 0.000
#> SRR1203770 1 0.000 1.000 1.000 0.000
#> SRR1203771 1 0.000 1.000 1.000 0.000
#> SRR1203772 1 0.000 1.000 1.000 0.000
#> SRR1203773 1 0.000 1.000 1.000 0.000
#> SRR1203774 1 0.000 1.000 1.000 0.000
#> SRR1203775 1 0.000 1.000 1.000 0.000
#> SRR1203800 1 0.000 1.000 1.000 0.000
#> SRR1203801 1 0.000 1.000 1.000 0.000
#> SRR1203802 1 0.000 1.000 1.000 0.000
#> SRR1203803 1 0.000 1.000 1.000 0.000
#> SRR1203804 1 0.000 1.000 1.000 0.000
#> SRR1203805 1 0.000 1.000 1.000 0.000
#> SRR1203806 1 0.000 1.000 1.000 0.000
#> SRR1203807 1 0.000 1.000 1.000 0.000
#> SRR1203808 1 0.000 1.000 1.000 0.000
#> SRR1203811 1 0.000 1.000 1.000 0.000
#> SRR1203812 1 0.000 1.000 1.000 0.000
#> SRR1203813 1 0.000 1.000 1.000 0.000
#> SRR1203814 1 0.000 1.000 1.000 0.000
#> SRR1203815 1 0.000 1.000 1.000 0.000
#> SRR1203816 1 0.000 1.000 1.000 0.000
#> SRR1203817 1 0.000 1.000 1.000 0.000
#> SRR1203818 1 0.000 1.000 1.000 0.000
#> SRR1203819 1 0.000 1.000 1.000 0.000
#> SRR1203822 1 0.000 1.000 1.000 0.000
#> SRR1203823 1 0.000 1.000 1.000 0.000
#> SRR1203824 1 0.000 1.000 1.000 0.000
#> SRR1203825 1 0.000 1.000 1.000 0.000
#> SRR1203826 1 0.000 1.000 1.000 0.000
#> SRR1203827 2 0.000 1.000 0.000 1.000
#> SRR1203828 1 0.000 1.000 1.000 0.000
#> SRR1203829 1 0.000 1.000 1.000 0.000
#> SRR1203830 1 0.000 1.000 1.000 0.000
#> SRR1203831 1 0.000 1.000 1.000 0.000
#> SRR1203832 1 0.000 1.000 1.000 0.000
#> SRR1203833 1 0.000 1.000 1.000 0.000
#> SRR1203834 1 0.000 1.000 1.000 0.000
#> SRR1203835 1 0.000 1.000 1.000 0.000
#> SRR1203836 1 0.000 1.000 1.000 0.000
#> SRR1203837 1 0.000 1.000 1.000 0.000
#> SRR1203838 1 0.000 1.000 1.000 0.000
#> SRR1203839 1 0.000 1.000 1.000 0.000
#> SRR1203842 2 0.224 0.963 0.036 0.964
#> SRR1203843 1 0.000 1.000 1.000 0.000
#> SRR1203845 2 0.000 1.000 0.000 1.000
#> SRR1203844 2 0.000 1.000 0.000 1.000
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0.2878 0.8848 0.000 0.904 0.096
#> SRR1201590 2 0.2356 0.8859 0.000 0.928 0.072
#> SRR1201593 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201592 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201617 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201616 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201619 2 0.5138 0.8018 0.000 0.748 0.252
#> SRR1201618 2 0.5216 0.7918 0.000 0.740 0.260
#> SRR1201620 2 0.3267 0.8825 0.000 0.884 0.116
#> SRR1201621 2 0.3412 0.8805 0.000 0.876 0.124
#> SRR1201623 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201622 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201624 3 0.1964 0.8986 0.000 0.056 0.944
#> SRR1201625 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201626 3 0.4291 0.8014 0.000 0.180 0.820
#> SRR1201627 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201628 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201629 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201630 2 0.3619 0.8339 0.000 0.864 0.136
#> SRR1201631 2 0.5138 0.8018 0.000 0.748 0.252
#> SRR1201641 2 0.5138 0.8018 0.000 0.748 0.252
#> SRR1201640 2 0.5138 0.8018 0.000 0.748 0.252
#> SRR1201643 3 0.1964 0.9062 0.000 0.056 0.944
#> SRR1201644 3 0.0592 0.9300 0.000 0.012 0.988
#> SRR1201661 2 0.3619 0.8780 0.000 0.864 0.136
#> SRR1201662 2 0.3482 0.8798 0.000 0.872 0.128
#> SRR1201663 3 0.0237 0.9365 0.000 0.004 0.996
#> SRR1201664 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201665 2 0.3752 0.8760 0.000 0.856 0.144
#> SRR1201666 2 0.3752 0.8760 0.000 0.856 0.144
#> SRR1201667 2 0.3752 0.8760 0.000 0.856 0.144
#> SRR1201668 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201670 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201669 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201673 2 0.5835 0.6823 0.000 0.660 0.340
#> SRR1201672 2 0.5785 0.6962 0.000 0.668 0.332
#> SRR1201671 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201677 2 0.5948 0.6461 0.000 0.640 0.360
#> SRR1201676 2 0.5882 0.6684 0.000 0.652 0.348
#> SRR1201675 2 0.5706 0.7149 0.000 0.680 0.320
#> SRR1201674 2 0.5621 0.7324 0.000 0.692 0.308
#> SRR1201678 2 0.5760 0.7027 0.000 0.672 0.328
#> SRR1201682 2 0.3752 0.8760 0.000 0.856 0.144
#> SRR1201683 2 0.3752 0.8760 0.000 0.856 0.144
#> SRR1201680 2 0.3752 0.8760 0.000 0.856 0.144
#> SRR1201681 2 0.3752 0.8760 0.000 0.856 0.144
#> SRR1201679 2 0.3879 0.8727 0.000 0.848 0.152
#> SRR1201686 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201687 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201688 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201689 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201685 3 0.1289 0.9171 0.000 0.032 0.968
#> SRR1201692 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201691 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201690 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201696 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201695 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201694 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201693 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201697 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201698 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201700 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201708 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201707 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201706 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201702 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201705 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201701 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201704 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201703 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201716 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201715 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201717 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201712 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201709 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201711 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201714 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201713 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201710 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201719 2 0.3752 0.8760 0.000 0.856 0.144
#> SRR1201718 2 0.3752 0.8760 0.000 0.856 0.144
#> SRR1201721 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201720 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201723 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201722 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201725 2 0.3752 0.8760 0.000 0.856 0.144
#> SRR1201724 2 0.3752 0.8760 0.000 0.856 0.144
#> SRR1201726 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201727 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201731 2 0.6309 0.2817 0.000 0.500 0.500
#> SRR1201730 3 0.5785 0.3551 0.000 0.332 0.668
#> SRR1201734 2 0.3686 0.8770 0.000 0.860 0.140
#> SRR1201733 2 0.3752 0.8760 0.000 0.856 0.144
#> SRR1201736 2 0.4974 0.8159 0.000 0.764 0.236
#> SRR1201737 2 0.3752 0.8760 0.000 0.856 0.144
#> SRR1201739 2 0.3752 0.8760 0.000 0.856 0.144
#> SRR1201738 2 0.3752 0.8760 0.000 0.856 0.144
#> SRR1201742 2 0.5138 0.8018 0.000 0.748 0.252
#> SRR1201743 2 0.4974 0.8159 0.000 0.764 0.236
#> SRR1201745 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201744 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201749 2 0.0237 0.8785 0.000 0.996 0.004
#> SRR1201750 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201752 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201751 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201754 2 0.3412 0.8805 0.000 0.876 0.124
#> SRR1201753 2 0.3412 0.8805 0.000 0.876 0.124
#> SRR1201758 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201759 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201760 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201761 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201763 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201762 3 0.3412 0.8408 0.000 0.124 0.876
#> SRR1201764 2 0.5760 0.6991 0.000 0.672 0.328
#> SRR1201766 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201768 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201769 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201767 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201770 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201771 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201772 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201773 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201774 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201786 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201784 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201785 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201778 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201779 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201781 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201780 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201783 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201782 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201798 2 0.3192 0.8829 0.000 0.888 0.112
#> SRR1201797 2 0.2796 0.8849 0.000 0.908 0.092
#> SRR1201796 2 0.2711 0.8851 0.000 0.912 0.088
#> SRR1201795 2 0.1643 0.8837 0.000 0.956 0.044
#> SRR1201799 2 0.2448 0.8853 0.000 0.924 0.076
#> SRR1201794 2 0.1964 0.8845 0.000 0.944 0.056
#> SRR1201793 2 0.2711 0.8851 0.000 0.912 0.088
#> SRR1201792 2 0.2537 0.8853 0.000 0.920 0.080
#> SRR1201791 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201807 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201808 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201803 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201804 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201805 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201806 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201801 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201802 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201800 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201814 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201816 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201815 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201819 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201820 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201813 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201817 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201818 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1201825 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201827 2 0.5138 0.8018 0.000 0.748 0.252
#> SRR1201828 2 0.5138 0.8018 0.000 0.748 0.252
#> SRR1201826 3 0.5254 0.5527 0.000 0.264 0.736
#> SRR1201829 2 0.5138 0.8018 0.000 0.748 0.252
#> SRR1201830 2 0.5138 0.8018 0.000 0.748 0.252
#> SRR1201831 2 0.5138 0.8018 0.000 0.748 0.252
#> SRR1201832 2 0.5138 0.8018 0.000 0.748 0.252
#> SRR1201833 2 0.5138 0.8018 0.000 0.748 0.252
#> SRR1201865 3 0.3482 0.8392 0.000 0.128 0.872
#> SRR1201866 3 0.3482 0.8392 0.000 0.128 0.872
#> SRR1201867 3 0.3619 0.8355 0.000 0.136 0.864
#> SRR1201861 3 0.3412 0.8408 0.000 0.124 0.876
#> SRR1201862 3 0.3482 0.8392 0.000 0.128 0.872
#> SRR1201863 3 0.3619 0.8355 0.000 0.136 0.864
#> SRR1201859 3 0.4121 0.8118 0.000 0.168 0.832
#> SRR1201864 3 0.3412 0.8408 0.000 0.124 0.876
#> SRR1201860 3 0.3482 0.8392 0.000 0.128 0.872
#> SRR1201873 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201871 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201872 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201980 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1201979 3 0.1289 0.9127 0.000 0.032 0.968
#> SRR1201982 2 0.5138 0.8018 0.000 0.748 0.252
#> SRR1201981 3 0.6225 -0.0235 0.000 0.432 0.568
#> SRR1201998 2 0.5138 0.8018 0.000 0.748 0.252
#> SRR1201996 2 0.5138 0.8018 0.000 0.748 0.252
#> SRR1201997 2 0.3752 0.8760 0.000 0.856 0.144
#> SRR1202005 2 0.3340 0.8814 0.000 0.880 0.120
#> SRR1202006 2 0.3412 0.8805 0.000 0.876 0.124
#> SRR1202088 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1202087 3 0.0000 0.9392 0.000 0.000 1.000
#> SRR1202093 2 0.3752 0.8760 0.000 0.856 0.144
#> SRR1202092 2 0.5138 0.8018 0.000 0.748 0.252
#> SRR1202288 2 0.0424 0.8799 0.000 0.992 0.008
#> SRR1202289 2 0.3412 0.8805 0.000 0.876 0.124
#> SRR1202299 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1202298 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1202303 3 0.3619 0.8355 0.000 0.136 0.864
#> SRR1202372 2 0.3412 0.8805 0.000 0.876 0.124
#> SRR1202371 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1202563 2 0.5138 0.8018 0.000 0.748 0.252
#> SRR1202565 2 0.5138 0.8018 0.000 0.748 0.252
#> SRR1202564 2 0.4555 0.8434 0.000 0.800 0.200
#> SRR1202649 3 0.6291 -0.1299 0.000 0.468 0.532
#> SRR1202650 3 0.6305 -0.2154 0.000 0.484 0.516
#> SRR1202651 2 0.3412 0.8805 0.000 0.876 0.124
#> SRR1202843 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1202844 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1202845 2 0.3116 0.8402 0.000 0.892 0.108
#> SRR1202847 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1202846 2 0.0000 0.8788 0.000 1.000 0.000
#> SRR1202945 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1202949 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1202977 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1202978 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1202979 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1202990 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1202999 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203005 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203006 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203007 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203009 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203008 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203010 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203011 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203025 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203026 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203027 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203061 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203089 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203125 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203128 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203129 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203130 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203132 3 0.6235 -0.0455 0.000 0.436 0.564
#> SRR1203131 3 0.1411 0.9091 0.000 0.036 0.964
#> SRR1203133 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203138 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203760 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203761 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203770 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203771 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203772 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203773 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203774 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203775 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203800 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203801 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203802 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203803 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203804 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203805 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203806 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203807 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203808 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203811 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203812 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203813 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203814 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203815 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203816 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203817 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203818 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203819 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203822 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203823 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203824 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203825 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203826 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203827 3 0.4702 0.7671 0.000 0.212 0.788
#> SRR1203828 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203829 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203830 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203831 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203832 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203833 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203834 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203835 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203836 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203837 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203838 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203839 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203842 2 0.4295 0.8249 0.032 0.864 0.104
#> SRR1203843 1 0.0000 1.0000 1.000 0.000 0.000
#> SRR1203845 2 0.3412 0.8805 0.000 0.876 0.124
#> SRR1203844 2 0.3192 0.8831 0.000 0.888 0.112
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1201590 4 0.4222 0.650 0.000 0.272 0.000 0.728
#> SRR1201593 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1201592 4 0.0592 0.897 0.000 0.016 0.000 0.984
#> SRR1201617 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1201616 4 0.1211 0.881 0.000 0.040 0.000 0.960
#> SRR1201619 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201618 4 0.4761 0.504 0.000 0.372 0.000 0.628
#> SRR1201620 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1201621 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1201623 3 0.2345 0.957 0.000 0.100 0.900 0.000
#> SRR1201622 3 0.2345 0.957 0.000 0.100 0.900 0.000
#> SRR1201624 3 0.2081 0.951 0.000 0.084 0.916 0.000
#> SRR1201625 3 0.2081 0.951 0.000 0.084 0.916 0.000
#> SRR1201626 4 0.4543 0.655 0.000 0.000 0.324 0.676
#> SRR1201627 3 0.2011 0.801 0.000 0.000 0.920 0.080
#> SRR1201628 3 0.2589 0.955 0.000 0.116 0.884 0.000
#> SRR1201629 3 0.2973 0.948 0.000 0.144 0.856 0.000
#> SRR1201630 4 0.2760 0.831 0.000 0.128 0.000 0.872
#> SRR1201631 4 0.2868 0.824 0.000 0.136 0.000 0.864
#> SRR1201641 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201640 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201643 4 0.5369 0.718 0.000 0.144 0.112 0.744
#> SRR1201644 2 0.3858 0.768 0.000 0.844 0.100 0.056
#> SRR1201661 2 0.2408 0.895 0.000 0.896 0.000 0.104
#> SRR1201662 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1201663 3 0.2081 0.951 0.000 0.084 0.916 0.000
#> SRR1201664 3 0.2081 0.951 0.000 0.084 0.916 0.000
#> SRR1201665 2 0.3356 0.819 0.000 0.824 0.000 0.176
#> SRR1201666 2 0.1637 0.913 0.000 0.940 0.000 0.060
#> SRR1201667 2 0.1637 0.913 0.000 0.940 0.000 0.060
#> SRR1201668 3 0.2081 0.951 0.000 0.084 0.916 0.000
#> SRR1201670 3 0.2081 0.951 0.000 0.084 0.916 0.000
#> SRR1201669 3 0.2081 0.951 0.000 0.084 0.916 0.000
#> SRR1201673 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201672 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201671 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201677 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201676 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201675 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201674 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201678 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201682 2 0.1637 0.913 0.000 0.940 0.000 0.060
#> SRR1201683 2 0.1637 0.913 0.000 0.940 0.000 0.060
#> SRR1201680 2 0.1637 0.913 0.000 0.940 0.000 0.060
#> SRR1201681 2 0.1637 0.913 0.000 0.940 0.000 0.060
#> SRR1201679 2 0.1716 0.912 0.000 0.936 0.000 0.064
#> SRR1201686 3 0.2081 0.951 0.000 0.084 0.916 0.000
#> SRR1201687 3 0.2081 0.951 0.000 0.084 0.916 0.000
#> SRR1201688 3 0.2081 0.951 0.000 0.084 0.916 0.000
#> SRR1201689 3 0.2081 0.951 0.000 0.084 0.916 0.000
#> SRR1201685 3 0.2081 0.951 0.000 0.084 0.916 0.000
#> SRR1201692 3 0.2973 0.948 0.000 0.144 0.856 0.000
#> SRR1201691 3 0.2973 0.948 0.000 0.144 0.856 0.000
#> SRR1201690 3 0.2973 0.948 0.000 0.144 0.856 0.000
#> SRR1201696 3 0.2973 0.948 0.000 0.144 0.856 0.000
#> SRR1201695 3 0.2973 0.948 0.000 0.144 0.856 0.000
#> SRR1201694 3 0.2973 0.948 0.000 0.144 0.856 0.000
#> SRR1201693 3 0.2973 0.948 0.000 0.144 0.856 0.000
#> SRR1201697 3 0.2973 0.948 0.000 0.144 0.856 0.000
#> SRR1201698 2 0.3688 0.633 0.000 0.792 0.208 0.000
#> SRR1201700 3 0.2814 0.951 0.000 0.132 0.868 0.000
#> SRR1201708 3 0.2973 0.948 0.000 0.144 0.856 0.000
#> SRR1201707 3 0.2973 0.948 0.000 0.144 0.856 0.000
#> SRR1201706 3 0.2973 0.948 0.000 0.144 0.856 0.000
#> SRR1201702 3 0.2973 0.948 0.000 0.144 0.856 0.000
#> SRR1201705 3 0.2973 0.948 0.000 0.144 0.856 0.000
#> SRR1201701 3 0.2973 0.948 0.000 0.144 0.856 0.000
#> SRR1201704 3 0.2973 0.948 0.000 0.144 0.856 0.000
#> SRR1201703 3 0.2973 0.948 0.000 0.144 0.856 0.000
#> SRR1201716 3 0.2345 0.957 0.000 0.100 0.900 0.000
#> SRR1201715 3 0.2345 0.957 0.000 0.100 0.900 0.000
#> SRR1201717 3 0.2345 0.957 0.000 0.100 0.900 0.000
#> SRR1201712 3 0.2345 0.957 0.000 0.100 0.900 0.000
#> SRR1201709 3 0.2345 0.957 0.000 0.100 0.900 0.000
#> SRR1201711 3 0.2345 0.957 0.000 0.100 0.900 0.000
#> SRR1201714 3 0.2345 0.957 0.000 0.100 0.900 0.000
#> SRR1201713 3 0.2345 0.957 0.000 0.100 0.900 0.000
#> SRR1201710 3 0.2345 0.957 0.000 0.100 0.900 0.000
#> SRR1201719 2 0.1637 0.913 0.000 0.940 0.000 0.060
#> SRR1201718 2 0.1557 0.913 0.000 0.944 0.000 0.056
#> SRR1201721 3 0.2973 0.948 0.000 0.144 0.856 0.000
#> SRR1201720 3 0.2973 0.948 0.000 0.144 0.856 0.000
#> SRR1201723 3 0.2081 0.951 0.000 0.084 0.916 0.000
#> SRR1201722 3 0.2081 0.951 0.000 0.084 0.916 0.000
#> SRR1201725 2 0.1637 0.913 0.000 0.940 0.000 0.060
#> SRR1201724 2 0.1637 0.913 0.000 0.940 0.000 0.060
#> SRR1201726 3 0.2345 0.957 0.000 0.100 0.900 0.000
#> SRR1201727 3 0.2345 0.957 0.000 0.100 0.900 0.000
#> SRR1201731 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201730 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201734 2 0.1940 0.908 0.000 0.924 0.000 0.076
#> SRR1201733 2 0.4164 0.681 0.000 0.736 0.000 0.264
#> SRR1201736 4 0.3801 0.764 0.000 0.220 0.000 0.780
#> SRR1201737 2 0.1637 0.913 0.000 0.940 0.000 0.060
#> SRR1201739 2 0.1637 0.913 0.000 0.940 0.000 0.060
#> SRR1201738 2 0.1637 0.913 0.000 0.940 0.000 0.060
#> SRR1201742 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201743 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201745 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201744 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201749 4 0.0188 0.905 0.000 0.004 0.000 0.996
#> SRR1201750 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201752 2 0.4992 -0.207 0.000 0.524 0.476 0.000
#> SRR1201751 3 0.3444 0.912 0.000 0.184 0.816 0.000
#> SRR1201754 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1201753 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1201758 3 0.2081 0.951 0.000 0.084 0.916 0.000
#> SRR1201759 3 0.2081 0.951 0.000 0.084 0.916 0.000
#> SRR1201760 3 0.2921 0.949 0.000 0.140 0.860 0.000
#> SRR1201761 3 0.2921 0.949 0.000 0.140 0.860 0.000
#> SRR1201763 3 0.0817 0.894 0.000 0.024 0.976 0.000
#> SRR1201762 3 0.5000 -0.265 0.000 0.000 0.504 0.496
#> SRR1201764 4 0.4546 0.727 0.000 0.256 0.012 0.732
#> SRR1201766 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201768 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201769 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201767 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201770 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201771 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201772 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201773 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201774 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201786 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201784 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201785 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201778 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201779 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201781 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201780 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201783 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201782 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201798 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1201797 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1201796 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1201795 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1201799 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1201794 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1201793 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1201792 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1201791 4 0.3837 0.662 0.000 0.224 0.000 0.776
#> SRR1201807 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201808 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201803 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201804 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201805 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201806 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201801 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201802 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201800 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201814 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201816 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201815 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201819 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201820 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201813 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201817 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201818 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1201825 3 0.2345 0.957 0.000 0.100 0.900 0.000
#> SRR1201827 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201828 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201826 4 0.6773 0.549 0.000 0.284 0.132 0.584
#> SRR1201829 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201830 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201831 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201832 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201833 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201865 4 0.5423 0.712 0.000 0.144 0.116 0.740
#> SRR1201866 4 0.5528 0.702 0.000 0.144 0.124 0.732
#> SRR1201867 4 0.5314 0.722 0.000 0.144 0.108 0.748
#> SRR1201861 4 0.5630 0.690 0.000 0.136 0.140 0.724
#> SRR1201862 4 0.5199 0.731 0.000 0.144 0.100 0.756
#> SRR1201863 4 0.5018 0.744 0.000 0.144 0.088 0.768
#> SRR1201859 4 0.3421 0.832 0.000 0.088 0.044 0.868
#> SRR1201864 4 0.5314 0.722 0.000 0.144 0.108 0.748
#> SRR1201860 4 0.5578 0.696 0.000 0.144 0.128 0.728
#> SRR1201873 3 0.2345 0.957 0.000 0.100 0.900 0.000
#> SRR1201871 3 0.2345 0.957 0.000 0.100 0.900 0.000
#> SRR1201872 3 0.2345 0.957 0.000 0.100 0.900 0.000
#> SRR1201980 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201979 3 0.4331 0.775 0.000 0.288 0.712 0.000
#> SRR1201982 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201981 2 0.0707 0.894 0.000 0.980 0.020 0.000
#> SRR1201998 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201996 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1201997 2 0.1389 0.914 0.000 0.952 0.000 0.048
#> SRR1202005 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1202006 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1202088 3 0.2345 0.957 0.000 0.100 0.900 0.000
#> SRR1202087 3 0.2345 0.957 0.000 0.100 0.900 0.000
#> SRR1202093 2 0.1637 0.913 0.000 0.940 0.000 0.060
#> SRR1202092 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1202288 4 0.4790 0.286 0.000 0.380 0.000 0.620
#> SRR1202289 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1202299 4 0.1211 0.882 0.000 0.040 0.000 0.960
#> SRR1202298 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1202303 4 0.5378 0.378 0.000 0.012 0.448 0.540
#> SRR1202372 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1202371 4 0.1022 0.887 0.000 0.032 0.000 0.968
#> SRR1202563 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1202565 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1202564 2 0.0469 0.911 0.000 0.988 0.000 0.012
#> SRR1202649 4 0.2973 0.817 0.000 0.144 0.000 0.856
#> SRR1202650 4 0.2973 0.817 0.000 0.144 0.000 0.856
#> SRR1202651 2 0.2760 0.878 0.000 0.872 0.000 0.128
#> SRR1202843 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1202845 4 0.1716 0.873 0.000 0.064 0.000 0.936
#> SRR1202847 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1202846 4 0.0000 0.906 0.000 0.000 0.000 1.000
#> SRR1202945 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203132 2 0.0000 0.909 0.000 1.000 0.000 0.000
#> SRR1203131 3 0.4761 0.620 0.000 0.372 0.628 0.000
#> SRR1203133 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203827 4 0.2973 0.834 0.000 0.000 0.144 0.856
#> SRR1203828 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203842 4 0.3619 0.843 0.004 0.036 0.100 0.860
#> SRR1203843 1 0.0000 1.000 1.000 0.000 0.000 0.000
#> SRR1203845 2 0.2973 0.872 0.000 0.856 0.000 0.144
#> SRR1203844 2 0.2973 0.872 0.000 0.856 0.000 0.144
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.0290 0.9272 0 0.992 0.000 0.000 0.008
#> SRR1201590 5 0.3796 0.5449 0 0.300 0.000 0.000 0.700
#> SRR1201593 2 0.2193 0.8596 0 0.900 0.000 0.092 0.008
#> SRR1201592 5 0.3759 0.8237 0 0.092 0.000 0.092 0.816
#> SRR1201617 2 0.2193 0.8596 0 0.900 0.000 0.092 0.008
#> SRR1201616 5 0.3016 0.8031 0 0.132 0.000 0.020 0.848
#> SRR1201619 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201618 5 0.4331 0.3217 0 0.400 0.004 0.000 0.596
#> SRR1201620 2 0.2193 0.8596 0 0.900 0.000 0.092 0.008
#> SRR1201621 2 0.2193 0.8596 0 0.900 0.000 0.092 0.008
#> SRR1201623 3 0.0000 0.9286 0 0.000 1.000 0.000 0.000
#> SRR1201622 3 0.0000 0.9286 0 0.000 1.000 0.000 0.000
#> SRR1201624 3 0.4235 0.1324 0 0.000 0.576 0.424 0.000
#> SRR1201625 3 0.0290 0.9244 0 0.000 0.992 0.008 0.000
#> SRR1201626 4 0.3146 0.8967 0 0.000 0.028 0.844 0.128
#> SRR1201627 4 0.2690 0.8697 0 0.000 0.156 0.844 0.000
#> SRR1201628 3 0.0992 0.9225 0 0.008 0.968 0.024 0.000
#> SRR1201629 3 0.1764 0.9072 0 0.008 0.928 0.064 0.000
#> SRR1201630 5 0.1455 0.8593 0 0.008 0.008 0.032 0.952
#> SRR1201631 5 0.2050 0.8412 0 0.008 0.008 0.064 0.920
#> SRR1201641 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201640 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201643 5 0.4565 0.6666 0 0.008 0.176 0.064 0.752
#> SRR1201644 2 0.4793 0.7555 0 0.772 0.116 0.064 0.048
#> SRR1201661 2 0.0290 0.9272 0 0.992 0.000 0.000 0.008
#> SRR1201662 2 0.0290 0.9272 0 0.992 0.000 0.000 0.008
#> SRR1201663 3 0.0290 0.9244 0 0.000 0.992 0.008 0.000
#> SRR1201664 3 0.0290 0.9244 0 0.000 0.992 0.008 0.000
#> SRR1201665 2 0.1478 0.8863 0 0.936 0.000 0.000 0.064
#> SRR1201666 2 0.0000 0.9294 0 1.000 0.000 0.000 0.000
#> SRR1201667 2 0.0000 0.9294 0 1.000 0.000 0.000 0.000
#> SRR1201668 3 0.0290 0.9244 0 0.000 0.992 0.008 0.000
#> SRR1201670 3 0.0290 0.9244 0 0.000 0.992 0.008 0.000
#> SRR1201669 3 0.0290 0.9244 0 0.000 0.992 0.008 0.000
#> SRR1201673 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201672 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201671 2 0.1877 0.9211 0 0.924 0.012 0.064 0.000
#> SRR1201677 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201676 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201675 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201674 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201678 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201682 2 0.0000 0.9294 0 1.000 0.000 0.000 0.000
#> SRR1201683 2 0.0000 0.9294 0 1.000 0.000 0.000 0.000
#> SRR1201680 2 0.0000 0.9294 0 1.000 0.000 0.000 0.000
#> SRR1201681 2 0.0000 0.9294 0 1.000 0.000 0.000 0.000
#> SRR1201679 2 0.0693 0.9300 0 0.980 0.000 0.012 0.008
#> SRR1201686 3 0.0290 0.9244 0 0.000 0.992 0.008 0.000
#> SRR1201687 3 0.0290 0.9244 0 0.000 0.992 0.008 0.000
#> SRR1201688 3 0.0290 0.9244 0 0.000 0.992 0.008 0.000
#> SRR1201689 3 0.0290 0.9244 0 0.000 0.992 0.008 0.000
#> SRR1201685 3 0.0290 0.9244 0 0.000 0.992 0.008 0.000
#> SRR1201692 3 0.1764 0.9072 0 0.008 0.928 0.064 0.000
#> SRR1201691 3 0.1764 0.9072 0 0.008 0.928 0.064 0.000
#> SRR1201690 3 0.1764 0.9072 0 0.008 0.928 0.064 0.000
#> SRR1201696 3 0.1764 0.9072 0 0.008 0.928 0.064 0.000
#> SRR1201695 3 0.1764 0.9072 0 0.008 0.928 0.064 0.000
#> SRR1201694 3 0.1764 0.9072 0 0.008 0.928 0.064 0.000
#> SRR1201693 3 0.1764 0.9072 0 0.008 0.928 0.064 0.000
#> SRR1201697 3 0.1764 0.9072 0 0.008 0.928 0.064 0.000
#> SRR1201698 2 0.4937 0.5423 0 0.672 0.264 0.064 0.000
#> SRR1201700 3 0.1484 0.9158 0 0.008 0.944 0.048 0.000
#> SRR1201708 3 0.1478 0.9123 0 0.000 0.936 0.064 0.000
#> SRR1201707 3 0.1478 0.9123 0 0.000 0.936 0.064 0.000
#> SRR1201706 3 0.1478 0.9123 0 0.000 0.936 0.064 0.000
#> SRR1201702 3 0.1478 0.9123 0 0.000 0.936 0.064 0.000
#> SRR1201705 3 0.1478 0.9123 0 0.000 0.936 0.064 0.000
#> SRR1201701 3 0.1478 0.9123 0 0.000 0.936 0.064 0.000
#> SRR1201704 3 0.1478 0.9123 0 0.000 0.936 0.064 0.000
#> SRR1201703 3 0.1478 0.9123 0 0.000 0.936 0.064 0.000
#> SRR1201716 3 0.0000 0.9286 0 0.000 1.000 0.000 0.000
#> SRR1201715 3 0.0000 0.9286 0 0.000 1.000 0.000 0.000
#> SRR1201717 3 0.0000 0.9286 0 0.000 1.000 0.000 0.000
#> SRR1201712 3 0.0000 0.9286 0 0.000 1.000 0.000 0.000
#> SRR1201709 3 0.0000 0.9286 0 0.000 1.000 0.000 0.000
#> SRR1201711 3 0.0000 0.9286 0 0.000 1.000 0.000 0.000
#> SRR1201714 3 0.0000 0.9286 0 0.000 1.000 0.000 0.000
#> SRR1201713 3 0.0000 0.9286 0 0.000 1.000 0.000 0.000
#> SRR1201710 3 0.0000 0.9286 0 0.000 1.000 0.000 0.000
#> SRR1201719 2 0.0000 0.9294 0 1.000 0.000 0.000 0.000
#> SRR1201718 2 0.0162 0.9298 0 0.996 0.000 0.004 0.000
#> SRR1201721 3 0.1764 0.9072 0 0.008 0.928 0.064 0.000
#> SRR1201720 3 0.1764 0.9072 0 0.008 0.928 0.064 0.000
#> SRR1201723 3 0.0290 0.9244 0 0.000 0.992 0.008 0.000
#> SRR1201722 3 0.0290 0.9244 0 0.000 0.992 0.008 0.000
#> SRR1201725 2 0.0000 0.9294 0 1.000 0.000 0.000 0.000
#> SRR1201724 2 0.0000 0.9294 0 1.000 0.000 0.000 0.000
#> SRR1201726 3 0.0000 0.9286 0 0.000 1.000 0.000 0.000
#> SRR1201727 3 0.0000 0.9286 0 0.000 1.000 0.000 0.000
#> SRR1201731 2 0.1877 0.9211 0 0.924 0.012 0.064 0.000
#> SRR1201730 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201734 2 0.0162 0.9284 0 0.996 0.000 0.000 0.004
#> SRR1201733 2 0.3074 0.7106 0 0.804 0.000 0.000 0.196
#> SRR1201736 5 0.3246 0.6785 0 0.184 0.000 0.008 0.808
#> SRR1201737 2 0.0000 0.9294 0 1.000 0.000 0.000 0.000
#> SRR1201739 2 0.0000 0.9294 0 1.000 0.000 0.000 0.000
#> SRR1201738 2 0.0000 0.9294 0 1.000 0.000 0.000 0.000
#> SRR1201742 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201743 2 0.1697 0.9245 0 0.932 0.008 0.060 0.000
#> SRR1201745 5 0.3532 0.8360 0 0.076 0.000 0.092 0.832
#> SRR1201744 5 0.1908 0.8663 0 0.000 0.000 0.092 0.908
#> SRR1201749 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1201750 5 0.2068 0.8660 0 0.004 0.000 0.092 0.904
#> SRR1201752 3 0.5415 0.2526 0 0.384 0.552 0.064 0.000
#> SRR1201751 3 0.3116 0.8213 0 0.076 0.860 0.064 0.000
#> SRR1201754 2 0.0290 0.9272 0 0.992 0.000 0.000 0.008
#> SRR1201753 2 0.2193 0.8596 0 0.900 0.000 0.092 0.008
#> SRR1201758 3 0.0290 0.9244 0 0.000 0.992 0.008 0.000
#> SRR1201759 3 0.0290 0.9244 0 0.000 0.992 0.008 0.000
#> SRR1201760 3 0.1270 0.9169 0 0.000 0.948 0.052 0.000
#> SRR1201761 3 0.1197 0.9179 0 0.000 0.952 0.048 0.000
#> SRR1201763 4 0.2690 0.8697 0 0.000 0.156 0.844 0.000
#> SRR1201762 4 0.3336 0.9022 0 0.000 0.060 0.844 0.096
#> SRR1201764 5 0.4708 0.6302 0 0.180 0.012 0.064 0.744
#> SRR1201766 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1201768 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1201769 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1201767 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1201770 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1201771 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1201772 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1201773 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1201774 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1201786 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1201784 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1201785 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1201778 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1201779 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1201781 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1201780 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1201783 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1201782 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1201798 2 0.0290 0.9272 0 0.992 0.000 0.000 0.008
#> SRR1201797 2 0.0290 0.9272 0 0.992 0.000 0.000 0.008
#> SRR1201796 2 0.0290 0.9272 0 0.992 0.000 0.000 0.008
#> SRR1201795 2 0.0290 0.9272 0 0.992 0.000 0.000 0.008
#> SRR1201799 2 0.0290 0.9272 0 0.992 0.000 0.000 0.008
#> SRR1201794 2 0.0290 0.9272 0 0.992 0.000 0.000 0.008
#> SRR1201793 2 0.0290 0.9272 0 0.992 0.000 0.000 0.008
#> SRR1201792 2 0.0290 0.9272 0 0.992 0.000 0.000 0.008
#> SRR1201791 5 0.4192 0.3966 0 0.404 0.000 0.000 0.596
#> SRR1201807 5 0.3003 0.8546 0 0.044 0.000 0.092 0.864
#> SRR1201808 5 0.3281 0.8470 0 0.060 0.000 0.092 0.848
#> SRR1201803 5 0.3146 0.8510 0 0.052 0.000 0.092 0.856
#> SRR1201804 5 0.3281 0.8470 0 0.060 0.000 0.092 0.848
#> SRR1201805 5 0.3281 0.8470 0 0.060 0.000 0.092 0.848
#> SRR1201806 5 0.3281 0.8470 0 0.060 0.000 0.092 0.848
#> SRR1201801 5 0.3003 0.8546 0 0.044 0.000 0.092 0.864
#> SRR1201802 5 0.3281 0.8470 0 0.060 0.000 0.092 0.848
#> SRR1201800 5 0.1908 0.8663 0 0.000 0.000 0.092 0.908
#> SRR1201814 5 0.1908 0.8663 0 0.000 0.000 0.092 0.908
#> SRR1201816 5 0.1908 0.8663 0 0.000 0.000 0.092 0.908
#> SRR1201815 5 0.1908 0.8663 0 0.000 0.000 0.092 0.908
#> SRR1201819 5 0.1908 0.8663 0 0.000 0.000 0.092 0.908
#> SRR1201820 5 0.1908 0.8663 0 0.000 0.000 0.092 0.908
#> SRR1201813 5 0.1908 0.8663 0 0.000 0.000 0.092 0.908
#> SRR1201817 5 0.1908 0.8663 0 0.000 0.000 0.092 0.908
#> SRR1201818 5 0.1908 0.8663 0 0.000 0.000 0.092 0.908
#> SRR1201825 3 0.0000 0.9286 0 0.000 1.000 0.000 0.000
#> SRR1201827 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201828 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201826 5 0.6542 0.4121 0 0.228 0.104 0.064 0.604
#> SRR1201829 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201830 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201831 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201832 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201833 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201865 5 0.3482 0.7928 0 0.008 0.096 0.052 0.844
#> SRR1201866 5 0.3739 0.7715 0 0.008 0.116 0.052 0.824
#> SRR1201867 5 0.3136 0.8116 0 0.008 0.072 0.052 0.868
#> SRR1201861 5 0.3887 0.7468 0 0.008 0.148 0.040 0.804
#> SRR1201862 5 0.3257 0.8071 0 0.008 0.080 0.052 0.860
#> SRR1201863 5 0.2943 0.8214 0 0.008 0.060 0.052 0.880
#> SRR1201859 5 0.0290 0.8714 0 0.008 0.000 0.000 0.992
#> SRR1201864 5 0.3428 0.7972 0 0.008 0.092 0.052 0.848
#> SRR1201860 5 0.3834 0.7620 0 0.008 0.124 0.052 0.816
#> SRR1201873 3 0.0000 0.9286 0 0.000 1.000 0.000 0.000
#> SRR1201871 3 0.0000 0.9286 0 0.000 1.000 0.000 0.000
#> SRR1201872 3 0.0000 0.9286 0 0.000 1.000 0.000 0.000
#> SRR1201980 2 0.1877 0.9211 0 0.924 0.012 0.064 0.000
#> SRR1201979 3 0.4289 0.6532 0 0.176 0.760 0.064 0.000
#> SRR1201982 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201981 2 0.2260 0.9084 0 0.908 0.028 0.064 0.000
#> SRR1201998 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201996 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1201997 2 0.0510 0.9299 0 0.984 0.000 0.016 0.000
#> SRR1202005 2 0.0290 0.9272 0 0.992 0.000 0.000 0.008
#> SRR1202006 2 0.0290 0.9272 0 0.992 0.000 0.000 0.008
#> SRR1202088 3 0.0000 0.9286 0 0.000 1.000 0.000 0.000
#> SRR1202087 3 0.0000 0.9286 0 0.000 1.000 0.000 0.000
#> SRR1202093 2 0.0000 0.9294 0 1.000 0.000 0.000 0.000
#> SRR1202092 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1202288 2 0.4930 0.0959 0 0.548 0.000 0.028 0.424
#> SRR1202289 2 0.0290 0.9272 0 0.992 0.000 0.000 0.008
#> SRR1202299 5 0.3865 0.8164 0 0.100 0.000 0.092 0.808
#> SRR1202298 5 0.1908 0.8663 0 0.000 0.000 0.092 0.908
#> SRR1202303 4 0.2612 0.8720 0 0.000 0.124 0.868 0.008
#> SRR1202372 2 0.0290 0.9272 0 0.992 0.000 0.000 0.008
#> SRR1202371 5 0.3346 0.8391 0 0.064 0.000 0.092 0.844
#> SRR1202563 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1202565 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1202564 2 0.1478 0.9250 0 0.936 0.000 0.064 0.000
#> SRR1202649 5 0.2162 0.8395 0 0.012 0.008 0.064 0.916
#> SRR1202650 5 0.2050 0.8412 0 0.008 0.008 0.064 0.920
#> SRR1202651 2 0.2411 0.8652 0 0.884 0.000 0.108 0.008
#> SRR1202843 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1202845 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1202847 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1202846 5 0.0000 0.8749 0 0.000 0.000 0.000 1.000
#> SRR1202945 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203132 2 0.1764 0.9239 0 0.928 0.008 0.064 0.000
#> SRR1203131 3 0.5047 0.4414 0 0.284 0.652 0.064 0.000
#> SRR1203133 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203827 4 0.2690 0.8794 0 0.000 0.000 0.844 0.156
#> SRR1203828 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203842 4 0.2773 0.8729 0 0.000 0.000 0.836 0.164
#> SRR1203843 1 0.0000 1.0000 1 0.000 0.000 0.000 0.000
#> SRR1203845 2 0.0290 0.9272 0 0.992 0.000 0.000 0.008
#> SRR1203844 2 0.2136 0.8634 0 0.904 0.000 0.088 0.008
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201590 6 0.3817 0.290630 0 0.000 0.432 0.000 0.000 0.568
#> SRR1201593 2 0.3531 0.587316 0 0.672 0.328 0.000 0.000 0.000
#> SRR1201592 2 0.5267 0.671008 0 0.600 0.236 0.000 0.000 0.164
#> SRR1201617 2 0.3531 0.587316 0 0.672 0.328 0.000 0.000 0.000
#> SRR1201616 6 0.5991 -0.144244 0 0.308 0.256 0.000 0.000 0.436
#> SRR1201619 3 0.2402 0.834656 0 0.000 0.856 0.140 0.004 0.000
#> SRR1201618 3 0.6367 0.280416 0 0.032 0.456 0.148 0.004 0.360
#> SRR1201620 2 0.3515 0.590536 0 0.676 0.324 0.000 0.000 0.000
#> SRR1201621 2 0.3547 0.582502 0 0.668 0.332 0.000 0.000 0.000
#> SRR1201623 5 0.0000 0.882473 0 0.000 0.000 0.000 1.000 0.000
#> SRR1201622 5 0.0000 0.882473 0 0.000 0.000 0.000 1.000 0.000
#> SRR1201624 4 0.5091 0.318719 0 0.080 0.000 0.504 0.416 0.000
#> SRR1201625 5 0.0146 0.880410 0 0.000 0.000 0.004 0.996 0.000
#> SRR1201626 4 0.3404 0.895445 0 0.224 0.000 0.760 0.000 0.016
#> SRR1201627 4 0.3404 0.897572 0 0.224 0.000 0.760 0.016 0.000
#> SRR1201628 5 0.2664 0.789888 0 0.000 0.000 0.184 0.816 0.000
#> SRR1201629 5 0.2996 0.763873 0 0.000 0.000 0.228 0.772 0.000
#> SRR1201630 6 0.1471 0.790353 0 0.000 0.000 0.064 0.004 0.932
#> SRR1201631 6 0.5496 0.453372 0 0.184 0.000 0.228 0.004 0.584
#> SRR1201641 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201640 3 0.3081 0.819216 0 0.000 0.776 0.220 0.004 0.000
#> SRR1201643 6 0.5855 0.000229 0 0.000 0.000 0.192 0.396 0.412
#> SRR1201644 3 0.5074 0.705865 0 0.000 0.660 0.228 0.092 0.020
#> SRR1201661 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201662 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201663 5 0.0146 0.880410 0 0.000 0.000 0.004 0.996 0.000
#> SRR1201664 5 0.0146 0.880410 0 0.000 0.000 0.004 0.996 0.000
#> SRR1201665 3 0.1225 0.826608 0 0.000 0.952 0.012 0.000 0.036
#> SRR1201666 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201667 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201668 5 0.0146 0.880410 0 0.000 0.000 0.004 0.996 0.000
#> SRR1201670 5 0.0146 0.880410 0 0.000 0.000 0.004 0.996 0.000
#> SRR1201669 5 0.0146 0.880410 0 0.000 0.000 0.004 0.996 0.000
#> SRR1201673 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201672 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201671 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201677 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201676 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201675 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201674 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201678 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201682 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201683 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201680 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201681 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201679 3 0.0363 0.845126 0 0.000 0.988 0.012 0.000 0.000
#> SRR1201686 5 0.0146 0.880410 0 0.000 0.000 0.004 0.996 0.000
#> SRR1201687 5 0.0146 0.880410 0 0.000 0.000 0.004 0.996 0.000
#> SRR1201688 5 0.0146 0.880410 0 0.000 0.000 0.004 0.996 0.000
#> SRR1201689 5 0.0146 0.880410 0 0.000 0.000 0.004 0.996 0.000
#> SRR1201685 5 0.0146 0.880410 0 0.000 0.000 0.004 0.996 0.000
#> SRR1201692 5 0.2996 0.763873 0 0.000 0.000 0.228 0.772 0.000
#> SRR1201691 5 0.2996 0.763873 0 0.000 0.000 0.228 0.772 0.000
#> SRR1201690 5 0.2996 0.763873 0 0.000 0.000 0.228 0.772 0.000
#> SRR1201696 5 0.2996 0.763873 0 0.000 0.000 0.228 0.772 0.000
#> SRR1201695 5 0.2996 0.763873 0 0.000 0.000 0.228 0.772 0.000
#> SRR1201694 5 0.2996 0.763873 0 0.000 0.000 0.228 0.772 0.000
#> SRR1201693 5 0.2996 0.763873 0 0.000 0.000 0.228 0.772 0.000
#> SRR1201697 5 0.2996 0.763873 0 0.000 0.000 0.228 0.772 0.000
#> SRR1201698 3 0.5388 0.572545 0 0.000 0.584 0.228 0.188 0.000
#> SRR1201700 5 0.2823 0.780828 0 0.000 0.000 0.204 0.796 0.000
#> SRR1201708 5 0.1610 0.859763 0 0.000 0.000 0.084 0.916 0.000
#> SRR1201707 5 0.1610 0.859763 0 0.000 0.000 0.084 0.916 0.000
#> SRR1201706 5 0.1610 0.859763 0 0.000 0.000 0.084 0.916 0.000
#> SRR1201702 5 0.1610 0.859763 0 0.000 0.000 0.084 0.916 0.000
#> SRR1201705 5 0.1610 0.859763 0 0.000 0.000 0.084 0.916 0.000
#> SRR1201701 5 0.1610 0.859763 0 0.000 0.000 0.084 0.916 0.000
#> SRR1201704 5 0.1610 0.859763 0 0.000 0.000 0.084 0.916 0.000
#> SRR1201703 5 0.1610 0.859763 0 0.000 0.000 0.084 0.916 0.000
#> SRR1201716 5 0.0000 0.882473 0 0.000 0.000 0.000 1.000 0.000
#> SRR1201715 5 0.0000 0.882473 0 0.000 0.000 0.000 1.000 0.000
#> SRR1201717 5 0.0000 0.882473 0 0.000 0.000 0.000 1.000 0.000
#> SRR1201712 5 0.0000 0.882473 0 0.000 0.000 0.000 1.000 0.000
#> SRR1201709 5 0.0000 0.882473 0 0.000 0.000 0.000 1.000 0.000
#> SRR1201711 5 0.0000 0.882473 0 0.000 0.000 0.000 1.000 0.000
#> SRR1201714 5 0.0000 0.882473 0 0.000 0.000 0.000 1.000 0.000
#> SRR1201713 5 0.0000 0.882473 0 0.000 0.000 0.000 1.000 0.000
#> SRR1201710 5 0.0000 0.882473 0 0.000 0.000 0.000 1.000 0.000
#> SRR1201719 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201718 3 0.1204 0.843980 0 0.000 0.944 0.056 0.000 0.000
#> SRR1201721 5 0.2941 0.770737 0 0.000 0.000 0.220 0.780 0.000
#> SRR1201720 5 0.2941 0.770737 0 0.000 0.000 0.220 0.780 0.000
#> SRR1201723 5 0.0146 0.880410 0 0.000 0.000 0.004 0.996 0.000
#> SRR1201722 5 0.0146 0.880410 0 0.000 0.000 0.004 0.996 0.000
#> SRR1201725 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201724 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201726 5 0.0000 0.882473 0 0.000 0.000 0.000 1.000 0.000
#> SRR1201727 5 0.0000 0.882473 0 0.000 0.000 0.000 1.000 0.000
#> SRR1201731 3 0.3190 0.817445 0 0.000 0.772 0.220 0.008 0.000
#> SRR1201730 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201734 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201733 3 0.2378 0.707735 0 0.000 0.848 0.000 0.000 0.152
#> SRR1201736 6 0.3736 0.630372 0 0.000 0.068 0.156 0.000 0.776
#> SRR1201737 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201739 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201738 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201742 3 0.3023 0.821190 0 0.000 0.784 0.212 0.004 0.000
#> SRR1201743 3 0.1858 0.840481 0 0.000 0.904 0.092 0.004 0.000
#> SRR1201745 2 0.4614 0.697062 0 0.676 0.228 0.000 0.000 0.096
#> SRR1201744 2 0.3515 0.798229 0 0.676 0.000 0.000 0.000 0.324
#> SRR1201749 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201750 6 0.5540 -0.338183 0 0.412 0.116 0.004 0.000 0.468
#> SRR1201752 5 0.5981 -0.042898 0 0.000 0.376 0.228 0.396 0.000
#> SRR1201751 5 0.3668 0.730152 0 0.000 0.028 0.228 0.744 0.000
#> SRR1201754 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201753 2 0.3725 0.592231 0 0.676 0.316 0.008 0.000 0.000
#> SRR1201758 5 0.0146 0.880410 0 0.000 0.000 0.004 0.996 0.000
#> SRR1201759 5 0.0146 0.880410 0 0.000 0.000 0.004 0.996 0.000
#> SRR1201760 5 0.1814 0.852216 0 0.000 0.000 0.100 0.900 0.000
#> SRR1201761 5 0.1141 0.868836 0 0.000 0.000 0.052 0.948 0.000
#> SRR1201763 4 0.3104 0.870326 0 0.184 0.000 0.800 0.016 0.000
#> SRR1201762 4 0.3404 0.895445 0 0.224 0.000 0.760 0.000 0.016
#> SRR1201764 6 0.4576 0.547431 0 0.000 0.072 0.228 0.008 0.692
#> SRR1201766 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201768 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201769 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201767 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201770 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201771 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201772 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201773 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201774 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201786 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201784 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201785 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201778 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201779 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201781 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201780 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201783 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201782 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201798 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201797 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201796 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201795 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201799 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201794 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201793 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201792 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1201791 3 0.3151 0.558279 0 0.000 0.748 0.000 0.000 0.252
#> SRR1201807 2 0.4234 0.815428 0 0.676 0.044 0.000 0.000 0.280
#> SRR1201808 2 0.4348 0.816759 0 0.676 0.056 0.000 0.000 0.268
#> SRR1201803 2 0.4312 0.816658 0 0.676 0.052 0.000 0.000 0.272
#> SRR1201804 2 0.4348 0.816759 0 0.676 0.056 0.000 0.000 0.268
#> SRR1201805 2 0.4348 0.816759 0 0.676 0.056 0.000 0.000 0.268
#> SRR1201806 2 0.4348 0.816759 0 0.676 0.056 0.000 0.000 0.268
#> SRR1201801 2 0.4234 0.815428 0 0.676 0.044 0.000 0.000 0.280
#> SRR1201802 2 0.4348 0.816759 0 0.676 0.056 0.000 0.000 0.268
#> SRR1201800 2 0.3515 0.798229 0 0.676 0.000 0.000 0.000 0.324
#> SRR1201814 2 0.3515 0.798229 0 0.676 0.000 0.000 0.000 0.324
#> SRR1201816 2 0.3515 0.798229 0 0.676 0.000 0.000 0.000 0.324
#> SRR1201815 2 0.3515 0.798229 0 0.676 0.000 0.000 0.000 0.324
#> SRR1201819 2 0.3515 0.798229 0 0.676 0.000 0.000 0.000 0.324
#> SRR1201820 2 0.3515 0.798229 0 0.676 0.000 0.000 0.000 0.324
#> SRR1201813 2 0.3515 0.798229 0 0.676 0.000 0.000 0.000 0.324
#> SRR1201817 2 0.3515 0.798229 0 0.676 0.000 0.000 0.000 0.324
#> SRR1201818 2 0.3515 0.798229 0 0.676 0.000 0.000 0.000 0.324
#> SRR1201825 5 0.0000 0.882473 0 0.000 0.000 0.000 1.000 0.000
#> SRR1201827 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201828 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201826 6 0.6190 0.408478 0 0.000 0.108 0.228 0.088 0.576
#> SRR1201829 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201830 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201831 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201832 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201833 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201865 6 0.2852 0.750858 0 0.000 0.000 0.064 0.080 0.856
#> SRR1201866 6 0.3103 0.731006 0 0.000 0.000 0.064 0.100 0.836
#> SRR1201867 6 0.2511 0.768573 0 0.000 0.000 0.064 0.056 0.880
#> SRR1201861 6 0.3130 0.719289 0 0.000 0.000 0.048 0.124 0.828
#> SRR1201862 6 0.2630 0.763429 0 0.000 0.000 0.064 0.064 0.872
#> SRR1201863 6 0.2384 0.773123 0 0.000 0.000 0.064 0.048 0.888
#> SRR1201859 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1201864 6 0.2852 0.750788 0 0.000 0.000 0.064 0.080 0.856
#> SRR1201860 6 0.3103 0.730981 0 0.000 0.000 0.064 0.100 0.836
#> SRR1201873 5 0.0000 0.882473 0 0.000 0.000 0.000 1.000 0.000
#> SRR1201871 5 0.0000 0.882473 0 0.000 0.000 0.000 1.000 0.000
#> SRR1201872 5 0.0000 0.882473 0 0.000 0.000 0.000 1.000 0.000
#> SRR1201980 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201979 5 0.4382 0.662337 0 0.000 0.076 0.228 0.696 0.000
#> SRR1201982 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201981 3 0.3431 0.806383 0 0.000 0.756 0.228 0.016 0.000
#> SRR1201998 3 0.2362 0.835242 0 0.000 0.860 0.136 0.004 0.000
#> SRR1201996 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1201997 3 0.0547 0.845488 0 0.000 0.980 0.020 0.000 0.000
#> SRR1202005 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1202006 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1202088 5 0.0000 0.882473 0 0.000 0.000 0.000 1.000 0.000
#> SRR1202087 5 0.0000 0.882473 0 0.000 0.000 0.000 1.000 0.000
#> SRR1202093 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1202092 3 0.1908 0.839081 0 0.000 0.900 0.096 0.004 0.000
#> SRR1202288 3 0.4655 0.431440 0 0.112 0.680 0.000 0.000 0.208
#> SRR1202289 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1202299 2 0.4745 0.777193 0 0.676 0.136 0.000 0.000 0.188
#> SRR1202298 2 0.3515 0.798229 0 0.676 0.000 0.000 0.000 0.324
#> SRR1202303 4 0.3404 0.897572 0 0.224 0.000 0.760 0.016 0.000
#> SRR1202372 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1202371 2 0.4737 0.715957 0 0.676 0.192 0.000 0.000 0.132
#> SRR1202563 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1202565 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1202564 3 0.2969 0.819095 0 0.000 0.776 0.224 0.000 0.000
#> SRR1202649 6 0.3052 0.656312 0 0.000 0.000 0.216 0.004 0.780
#> SRR1202650 6 0.3136 0.640138 0 0.000 0.000 0.228 0.004 0.768
#> SRR1202651 2 0.4765 0.533639 0 0.676 0.172 0.152 0.000 0.000
#> SRR1202843 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202845 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1202847 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1202846 6 0.0000 0.820470 0 0.000 0.000 0.000 0.000 1.000
#> SRR1202945 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.3136 0.816712 0 0.000 0.768 0.228 0.004 0.000
#> SRR1203131 5 0.5437 0.455727 0 0.000 0.196 0.228 0.576 0.000
#> SRR1203133 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203800 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203808 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203827 4 0.3215 0.894423 0 0.240 0.000 0.756 0.000 0.004
#> SRR1203828 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203842 4 0.3601 0.877657 0 0.312 0.000 0.684 0.000 0.004
#> SRR1203843 1 0.0000 1.000000 1 0.000 0.000 0.000 0.000 0.000
#> SRR1203845 3 0.0000 0.844912 0 0.000 1.000 0.000 0.000 0.000
#> SRR1203844 3 0.3050 0.532109 0 0.236 0.764 0.000 0.000 0.000
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["ATC", "mclust"]
# you can also extract it by
# res = res_list["ATC:mclust"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'ATC' method.
#> Subgroups are detected by 'mclust' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 3.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.3761 0.625 0.625
#> 3 3 1.000 0.994 0.998 0.1670 0.940 0.904
#> 4 4 0.590 0.714 0.844 0.4695 0.763 0.581
#> 5 5 0.589 0.704 0.718 0.0654 0.823 0.551
#> 6 6 0.673 0.617 0.734 0.0815 0.879 0.643
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 3
#> attr(,"optional")
#> [1] 2
There is also optional best \(k\) = 2 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0 1 0 1
#> SRR1201590 2 0 1 0 1
#> SRR1201593 2 0 1 0 1
#> SRR1201592 2 0 1 0 1
#> SRR1201617 2 0 1 0 1
#> SRR1201616 2 0 1 0 1
#> SRR1201619 2 0 1 0 1
#> SRR1201618 2 0 1 0 1
#> SRR1201620 2 0 1 0 1
#> SRR1201621 2 0 1 0 1
#> SRR1201623 2 0 1 0 1
#> SRR1201622 2 0 1 0 1
#> SRR1201624 2 0 1 0 1
#> SRR1201625 2 0 1 0 1
#> SRR1201626 2 0 1 0 1
#> SRR1201627 2 0 1 0 1
#> SRR1201628 2 0 1 0 1
#> SRR1201629 2 0 1 0 1
#> SRR1201630 2 0 1 0 1
#> SRR1201631 2 0 1 0 1
#> SRR1201641 2 0 1 0 1
#> SRR1201640 2 0 1 0 1
#> SRR1201643 2 0 1 0 1
#> SRR1201644 2 0 1 0 1
#> SRR1201661 2 0 1 0 1
#> SRR1201662 2 0 1 0 1
#> SRR1201663 2 0 1 0 1
#> SRR1201664 2 0 1 0 1
#> SRR1201665 2 0 1 0 1
#> SRR1201666 2 0 1 0 1
#> SRR1201667 2 0 1 0 1
#> SRR1201668 2 0 1 0 1
#> SRR1201670 2 0 1 0 1
#> SRR1201669 2 0 1 0 1
#> SRR1201673 2 0 1 0 1
#> SRR1201672 2 0 1 0 1
#> SRR1201671 2 0 1 0 1
#> SRR1201677 2 0 1 0 1
#> SRR1201676 2 0 1 0 1
#> SRR1201675 2 0 1 0 1
#> SRR1201674 2 0 1 0 1
#> SRR1201678 2 0 1 0 1
#> SRR1201682 2 0 1 0 1
#> SRR1201683 2 0 1 0 1
#> SRR1201680 2 0 1 0 1
#> SRR1201681 2 0 1 0 1
#> SRR1201679 2 0 1 0 1
#> SRR1201686 2 0 1 0 1
#> SRR1201687 2 0 1 0 1
#> SRR1201688 2 0 1 0 1
#> SRR1201689 2 0 1 0 1
#> SRR1201685 2 0 1 0 1
#> SRR1201692 2 0 1 0 1
#> SRR1201691 2 0 1 0 1
#> SRR1201690 2 0 1 0 1
#> SRR1201696 2 0 1 0 1
#> SRR1201695 2 0 1 0 1
#> SRR1201694 2 0 1 0 1
#> SRR1201693 2 0 1 0 1
#> SRR1201697 2 0 1 0 1
#> SRR1201698 2 0 1 0 1
#> SRR1201700 2 0 1 0 1
#> SRR1201708 2 0 1 0 1
#> SRR1201707 2 0 1 0 1
#> SRR1201706 2 0 1 0 1
#> SRR1201702 2 0 1 0 1
#> SRR1201705 2 0 1 0 1
#> SRR1201701 2 0 1 0 1
#> SRR1201704 2 0 1 0 1
#> SRR1201703 2 0 1 0 1
#> SRR1201716 2 0 1 0 1
#> SRR1201715 2 0 1 0 1
#> SRR1201717 2 0 1 0 1
#> SRR1201712 2 0 1 0 1
#> SRR1201709 2 0 1 0 1
#> SRR1201711 2 0 1 0 1
#> SRR1201714 2 0 1 0 1
#> SRR1201713 2 0 1 0 1
#> SRR1201710 2 0 1 0 1
#> SRR1201719 2 0 1 0 1
#> SRR1201718 2 0 1 0 1
#> SRR1201721 2 0 1 0 1
#> SRR1201720 2 0 1 0 1
#> SRR1201723 2 0 1 0 1
#> SRR1201722 2 0 1 0 1
#> SRR1201725 2 0 1 0 1
#> SRR1201724 2 0 1 0 1
#> SRR1201726 2 0 1 0 1
#> SRR1201727 2 0 1 0 1
#> SRR1201731 2 0 1 0 1
#> SRR1201730 2 0 1 0 1
#> SRR1201734 2 0 1 0 1
#> SRR1201733 2 0 1 0 1
#> SRR1201736 2 0 1 0 1
#> SRR1201737 2 0 1 0 1
#> SRR1201739 2 0 1 0 1
#> SRR1201738 2 0 1 0 1
#> SRR1201742 2 0 1 0 1
#> SRR1201743 2 0 1 0 1
#> SRR1201745 2 0 1 0 1
#> SRR1201744 2 0 1 0 1
#> SRR1201749 2 0 1 0 1
#> SRR1201750 2 0 1 0 1
#> SRR1201752 2 0 1 0 1
#> SRR1201751 2 0 1 0 1
#> SRR1201754 2 0 1 0 1
#> SRR1201753 2 0 1 0 1
#> SRR1201758 2 0 1 0 1
#> SRR1201759 2 0 1 0 1
#> SRR1201760 2 0 1 0 1
#> SRR1201761 2 0 1 0 1
#> SRR1201763 2 0 1 0 1
#> SRR1201762 2 0 1 0 1
#> SRR1201764 2 0 1 0 1
#> SRR1201766 2 0 1 0 1
#> SRR1201768 2 0 1 0 1
#> SRR1201769 2 0 1 0 1
#> SRR1201767 2 0 1 0 1
#> SRR1201770 2 0 1 0 1
#> SRR1201771 2 0 1 0 1
#> SRR1201772 2 0 1 0 1
#> SRR1201773 2 0 1 0 1
#> SRR1201774 2 0 1 0 1
#> SRR1201786 2 0 1 0 1
#> SRR1201784 2 0 1 0 1
#> SRR1201785 2 0 1 0 1
#> SRR1201778 2 0 1 0 1
#> SRR1201779 2 0 1 0 1
#> SRR1201781 2 0 1 0 1
#> SRR1201780 2 0 1 0 1
#> SRR1201783 2 0 1 0 1
#> SRR1201782 2 0 1 0 1
#> SRR1201798 2 0 1 0 1
#> SRR1201797 2 0 1 0 1
#> SRR1201796 2 0 1 0 1
#> SRR1201795 2 0 1 0 1
#> SRR1201799 2 0 1 0 1
#> SRR1201794 2 0 1 0 1
#> SRR1201793 2 0 1 0 1
#> SRR1201792 2 0 1 0 1
#> SRR1201791 2 0 1 0 1
#> SRR1201807 2 0 1 0 1
#> SRR1201808 2 0 1 0 1
#> SRR1201803 2 0 1 0 1
#> SRR1201804 2 0 1 0 1
#> SRR1201805 2 0 1 0 1
#> SRR1201806 2 0 1 0 1
#> SRR1201801 2 0 1 0 1
#> SRR1201802 2 0 1 0 1
#> SRR1201800 2 0 1 0 1
#> SRR1201814 2 0 1 0 1
#> SRR1201816 2 0 1 0 1
#> SRR1201815 2 0 1 0 1
#> SRR1201819 2 0 1 0 1
#> SRR1201820 2 0 1 0 1
#> SRR1201813 2 0 1 0 1
#> SRR1201817 2 0 1 0 1
#> SRR1201818 2 0 1 0 1
#> SRR1201825 2 0 1 0 1
#> SRR1201827 2 0 1 0 1
#> SRR1201828 2 0 1 0 1
#> SRR1201826 2 0 1 0 1
#> SRR1201829 2 0 1 0 1
#> SRR1201830 2 0 1 0 1
#> SRR1201831 2 0 1 0 1
#> SRR1201832 2 0 1 0 1
#> SRR1201833 2 0 1 0 1
#> SRR1201865 2 0 1 0 1
#> SRR1201866 2 0 1 0 1
#> SRR1201867 2 0 1 0 1
#> SRR1201861 2 0 1 0 1
#> SRR1201862 2 0 1 0 1
#> SRR1201863 2 0 1 0 1
#> SRR1201859 2 0 1 0 1
#> SRR1201864 2 0 1 0 1
#> SRR1201860 2 0 1 0 1
#> SRR1201873 2 0 1 0 1
#> SRR1201871 2 0 1 0 1
#> SRR1201872 2 0 1 0 1
#> SRR1201980 2 0 1 0 1
#> SRR1201979 2 0 1 0 1
#> SRR1201982 2 0 1 0 1
#> SRR1201981 2 0 1 0 1
#> SRR1201998 2 0 1 0 1
#> SRR1201996 2 0 1 0 1
#> SRR1201997 2 0 1 0 1
#> SRR1202005 2 0 1 0 1
#> SRR1202006 2 0 1 0 1
#> SRR1202088 2 0 1 0 1
#> SRR1202087 2 0 1 0 1
#> SRR1202093 2 0 1 0 1
#> SRR1202092 2 0 1 0 1
#> SRR1202288 2 0 1 0 1
#> SRR1202289 2 0 1 0 1
#> SRR1202299 2 0 1 0 1
#> SRR1202298 2 0 1 0 1
#> SRR1202303 2 0 1 0 1
#> SRR1202372 2 0 1 0 1
#> SRR1202371 2 0 1 0 1
#> SRR1202563 2 0 1 0 1
#> SRR1202565 2 0 1 0 1
#> SRR1202564 2 0 1 0 1
#> SRR1202649 2 0 1 0 1
#> SRR1202650 2 0 1 0 1
#> SRR1202651 2 0 1 0 1
#> SRR1202843 1 0 1 1 0
#> SRR1202844 1 0 1 1 0
#> SRR1202845 2 0 1 0 1
#> SRR1202847 2 0 1 0 1
#> SRR1202846 2 0 1 0 1
#> SRR1202945 1 0 1 1 0
#> SRR1202949 1 0 1 1 0
#> SRR1202977 1 0 1 1 0
#> SRR1202978 1 0 1 1 0
#> SRR1202979 1 0 1 1 0
#> SRR1202990 1 0 1 1 0
#> SRR1202999 1 0 1 1 0
#> SRR1203005 1 0 1 1 0
#> SRR1203006 1 0 1 1 0
#> SRR1203007 1 0 1 1 0
#> SRR1203009 1 0 1 1 0
#> SRR1203008 1 0 1 1 0
#> SRR1203010 1 0 1 1 0
#> SRR1203011 1 0 1 1 0
#> SRR1203025 1 0 1 1 0
#> SRR1203026 1 0 1 1 0
#> SRR1203027 1 0 1 1 0
#> SRR1203061 1 0 1 1 0
#> SRR1203089 1 0 1 1 0
#> SRR1203125 1 0 1 1 0
#> SRR1203128 1 0 1 1 0
#> SRR1203129 1 0 1 1 0
#> SRR1203130 1 0 1 1 0
#> SRR1203132 2 0 1 0 1
#> SRR1203131 2 0 1 0 1
#> SRR1203133 1 0 1 1 0
#> SRR1203138 1 0 1 1 0
#> SRR1203760 1 0 1 1 0
#> SRR1203761 1 0 1 1 0
#> SRR1203770 1 0 1 1 0
#> SRR1203771 1 0 1 1 0
#> SRR1203772 1 0 1 1 0
#> SRR1203773 1 0 1 1 0
#> SRR1203774 1 0 1 1 0
#> SRR1203775 1 0 1 1 0
#> SRR1203800 1 0 1 1 0
#> SRR1203801 1 0 1 1 0
#> SRR1203802 1 0 1 1 0
#> SRR1203803 1 0 1 1 0
#> SRR1203804 1 0 1 1 0
#> SRR1203805 1 0 1 1 0
#> SRR1203806 1 0 1 1 0
#> SRR1203807 1 0 1 1 0
#> SRR1203808 1 0 1 1 0
#> SRR1203811 1 0 1 1 0
#> SRR1203812 1 0 1 1 0
#> SRR1203813 1 0 1 1 0
#> SRR1203814 1 0 1 1 0
#> SRR1203815 1 0 1 1 0
#> SRR1203816 1 0 1 1 0
#> SRR1203817 1 0 1 1 0
#> SRR1203818 1 0 1 1 0
#> SRR1203819 1 0 1 1 0
#> SRR1203822 1 0 1 1 0
#> SRR1203823 1 0 1 1 0
#> SRR1203824 1 0 1 1 0
#> SRR1203825 1 0 1 1 0
#> SRR1203826 1 0 1 1 0
#> SRR1203827 2 0 1 0 1
#> SRR1203828 1 0 1 1 0
#> SRR1203829 1 0 1 1 0
#> SRR1203830 1 0 1 1 0
#> SRR1203831 1 0 1 1 0
#> SRR1203832 1 0 1 1 0
#> SRR1203833 1 0 1 1 0
#> SRR1203834 1 0 1 1 0
#> SRR1203835 1 0 1 1 0
#> SRR1203836 1 0 1 1 0
#> SRR1203837 1 0 1 1 0
#> SRR1203838 1 0 1 1 0
#> SRR1203839 1 0 1 1 0
#> SRR1203842 2 0 1 0 1
#> SRR1203843 1 0 1 1 0
#> SRR1203845 2 0 1 0 1
#> SRR1203844 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201590 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201593 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201592 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201617 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201616 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201619 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201618 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201620 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201621 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201623 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201622 2 0.0237 0.993 0.000 0.996 0.004
#> SRR1201624 3 0.0000 1.000 0.000 0.000 1.000
#> SRR1201625 3 0.0000 1.000 0.000 0.000 1.000
#> SRR1201626 3 0.0000 1.000 0.000 0.000 1.000
#> SRR1201627 3 0.0000 1.000 0.000 0.000 1.000
#> SRR1201628 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201629 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201630 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201631 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201641 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201640 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201643 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201644 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201661 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201662 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201663 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201664 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201665 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201666 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201667 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201668 2 0.6180 0.288 0.000 0.584 0.416
#> SRR1201670 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201669 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201673 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201672 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201671 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201677 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201676 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201675 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201674 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201678 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201682 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201683 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201680 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201681 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201679 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201686 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201687 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201688 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201689 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201685 3 0.0000 1.000 0.000 0.000 1.000
#> SRR1201692 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201691 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201690 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201696 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201695 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201694 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201693 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201697 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201698 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201700 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201708 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201707 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201706 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201702 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201705 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201701 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201704 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201703 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201716 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201715 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201717 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201712 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201709 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201711 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201714 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201713 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201710 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201719 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201718 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201721 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201720 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201723 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201722 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201725 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201724 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201726 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201727 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201731 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201730 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201734 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201733 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201736 2 0.0424 0.989 0.000 0.992 0.008
#> SRR1201737 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201739 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201738 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201742 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201743 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201745 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201744 2 0.0424 0.989 0.000 0.992 0.008
#> SRR1201749 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201750 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201752 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201751 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201754 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201753 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201758 3 0.0000 1.000 0.000 0.000 1.000
#> SRR1201759 3 0.0000 1.000 0.000 0.000 1.000
#> SRR1201760 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201761 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201763 3 0.0000 1.000 0.000 0.000 1.000
#> SRR1201762 3 0.0000 1.000 0.000 0.000 1.000
#> SRR1201764 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201766 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201768 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201769 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201767 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201770 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201771 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201772 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201773 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201774 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201786 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201784 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201785 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201778 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201779 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201781 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201780 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201783 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201782 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201798 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201797 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201796 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201795 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201799 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201794 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201793 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201792 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201791 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201807 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201808 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201803 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201804 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201805 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201806 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201801 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201802 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201800 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201814 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201816 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201815 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201819 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201820 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201813 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201817 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201818 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201825 2 0.3619 0.842 0.000 0.864 0.136
#> SRR1201827 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201828 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201826 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201829 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201830 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201831 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201832 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201833 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201865 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201866 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201867 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201861 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201862 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201863 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201859 2 0.1411 0.961 0.000 0.964 0.036
#> SRR1201864 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201860 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201873 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201871 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201872 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201980 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201979 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201982 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201981 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201998 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201996 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1201997 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202005 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202006 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202088 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202087 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202093 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202092 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202288 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202289 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202299 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202298 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202303 3 0.0000 1.000 0.000 0.000 1.000
#> SRR1202372 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202371 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202563 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202565 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202564 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202649 2 0.1289 0.965 0.000 0.968 0.032
#> SRR1202650 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202651 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202843 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202844 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202845 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202847 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202846 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1202945 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202949 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202977 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202978 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202979 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202990 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1202999 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203005 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203006 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203007 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203009 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203008 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203010 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203011 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203025 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203026 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203027 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203061 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203089 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203125 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203128 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203129 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203130 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203132 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1203131 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1203133 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203138 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203760 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203761 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203770 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203771 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203772 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203773 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203774 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203775 1 0.0237 0.996 0.996 0.000 0.004
#> SRR1203800 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203801 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203802 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203803 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203804 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203805 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203806 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203807 1 0.0592 0.988 0.988 0.000 0.012
#> SRR1203808 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203811 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203812 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203813 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203814 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203815 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203816 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203817 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203818 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203819 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203822 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203823 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203824 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203825 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203826 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203827 3 0.0000 1.000 0.000 0.000 1.000
#> SRR1203828 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203829 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203830 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203831 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203832 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203833 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203834 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203835 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203836 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203837 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203838 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203839 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203842 3 0.0000 1.000 0.000 0.000 1.000
#> SRR1203843 1 0.0000 1.000 1.000 0.000 0.000
#> SRR1203845 2 0.0000 0.997 0.000 1.000 0.000
#> SRR1203844 2 0.0000 0.997 0.000 1.000 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.3688 0.5797 0.000 0.792 0.208 0.000
#> SRR1201590 3 0.4898 0.4882 0.000 0.416 0.584 0.000
#> SRR1201593 2 0.2530 0.7037 0.000 0.888 0.112 0.000
#> SRR1201592 2 0.4998 -0.1335 0.000 0.512 0.488 0.000
#> SRR1201617 2 0.2973 0.6646 0.000 0.856 0.144 0.000
#> SRR1201616 2 0.2973 0.6755 0.000 0.856 0.144 0.000
#> SRR1201619 3 0.4222 0.7016 0.000 0.272 0.728 0.000
#> SRR1201618 3 0.4103 0.5470 0.000 0.256 0.744 0.000
#> SRR1201620 2 0.4994 -0.1372 0.000 0.520 0.480 0.000
#> SRR1201621 2 0.2149 0.7131 0.000 0.912 0.088 0.000
#> SRR1201623 3 0.2868 0.7442 0.000 0.136 0.864 0.000
#> SRR1201622 3 0.2408 0.6789 0.000 0.104 0.896 0.000
#> SRR1201624 4 0.0000 0.9805 0.000 0.000 0.000 1.000
#> SRR1201625 4 0.0000 0.9805 0.000 0.000 0.000 1.000
#> SRR1201626 4 0.0000 0.9805 0.000 0.000 0.000 1.000
#> SRR1201627 4 0.0000 0.9805 0.000 0.000 0.000 1.000
#> SRR1201628 3 0.3311 0.7030 0.000 0.172 0.828 0.000
#> SRR1201629 3 0.4679 0.6420 0.000 0.352 0.648 0.000
#> SRR1201630 2 0.4382 0.4311 0.000 0.704 0.296 0.000
#> SRR1201631 2 0.4898 0.0145 0.000 0.584 0.416 0.000
#> SRR1201641 3 0.4898 0.5382 0.000 0.416 0.584 0.000
#> SRR1201640 3 0.4916 0.5393 0.000 0.424 0.576 0.000
#> SRR1201643 3 0.4543 0.6803 0.000 0.324 0.676 0.000
#> SRR1201644 3 0.4888 0.5596 0.000 0.412 0.588 0.000
#> SRR1201661 2 0.4564 0.3772 0.000 0.672 0.328 0.000
#> SRR1201662 3 0.4999 0.3561 0.000 0.492 0.508 0.000
#> SRR1201663 3 0.0336 0.6617 0.000 0.008 0.992 0.000
#> SRR1201664 3 0.0188 0.6596 0.000 0.004 0.996 0.000
#> SRR1201665 3 0.4855 0.3785 0.000 0.400 0.600 0.000
#> SRR1201666 2 0.4564 0.3777 0.000 0.672 0.328 0.000
#> SRR1201667 2 0.4624 0.3286 0.000 0.660 0.340 0.000
#> SRR1201668 3 0.4560 0.3319 0.000 0.004 0.700 0.296
#> SRR1201670 3 0.0469 0.6656 0.000 0.012 0.988 0.000
#> SRR1201669 3 0.0469 0.6656 0.000 0.012 0.988 0.000
#> SRR1201673 3 0.3528 0.7477 0.000 0.192 0.808 0.000
#> SRR1201672 3 0.3528 0.7471 0.000 0.192 0.808 0.000
#> SRR1201671 3 0.3219 0.7200 0.000 0.164 0.836 0.000
#> SRR1201677 3 0.3528 0.7471 0.000 0.192 0.808 0.000
#> SRR1201676 3 0.3528 0.7471 0.000 0.192 0.808 0.000
#> SRR1201675 3 0.3569 0.7474 0.000 0.196 0.804 0.000
#> SRR1201674 3 0.3528 0.7471 0.000 0.192 0.808 0.000
#> SRR1201678 3 0.3569 0.7474 0.000 0.196 0.804 0.000
#> SRR1201682 2 0.5000 -0.3543 0.000 0.504 0.496 0.000
#> SRR1201683 3 0.5000 0.3547 0.000 0.500 0.500 0.000
#> SRR1201680 2 0.5000 -0.3584 0.000 0.504 0.496 0.000
#> SRR1201681 2 0.5000 -0.3704 0.000 0.500 0.500 0.000
#> SRR1201679 3 0.4989 0.1262 0.000 0.472 0.528 0.000
#> SRR1201686 3 0.0000 0.6562 0.000 0.000 1.000 0.000
#> SRR1201687 3 0.0000 0.6562 0.000 0.000 1.000 0.000
#> SRR1201688 3 0.0000 0.6562 0.000 0.000 1.000 0.000
#> SRR1201689 3 0.0000 0.6562 0.000 0.000 1.000 0.000
#> SRR1201685 4 0.3024 0.9017 0.000 0.000 0.148 0.852
#> SRR1201692 3 0.4817 0.5866 0.000 0.388 0.612 0.000
#> SRR1201691 3 0.4817 0.5866 0.000 0.388 0.612 0.000
#> SRR1201690 3 0.4250 0.7184 0.000 0.276 0.724 0.000
#> SRR1201696 3 0.4817 0.5866 0.000 0.388 0.612 0.000
#> SRR1201695 3 0.4817 0.5866 0.000 0.388 0.612 0.000
#> SRR1201694 3 0.4843 0.5725 0.000 0.396 0.604 0.000
#> SRR1201693 3 0.4817 0.5866 0.000 0.388 0.612 0.000
#> SRR1201697 3 0.4817 0.5866 0.000 0.388 0.612 0.000
#> SRR1201698 3 0.4817 0.5866 0.000 0.388 0.612 0.000
#> SRR1201700 3 0.2814 0.7446 0.000 0.132 0.868 0.000
#> SRR1201708 3 0.3172 0.7427 0.000 0.160 0.840 0.000
#> SRR1201707 3 0.3172 0.7427 0.000 0.160 0.840 0.000
#> SRR1201706 3 0.3172 0.7427 0.000 0.160 0.840 0.000
#> SRR1201702 3 0.3172 0.7427 0.000 0.160 0.840 0.000
#> SRR1201705 3 0.3172 0.7427 0.000 0.160 0.840 0.000
#> SRR1201701 3 0.3172 0.7427 0.000 0.160 0.840 0.000
#> SRR1201704 3 0.3172 0.7427 0.000 0.160 0.840 0.000
#> SRR1201703 3 0.3172 0.7427 0.000 0.160 0.840 0.000
#> SRR1201716 3 0.2647 0.7388 0.000 0.120 0.880 0.000
#> SRR1201715 3 0.2589 0.7377 0.000 0.116 0.884 0.000
#> SRR1201717 3 0.2647 0.7388 0.000 0.120 0.880 0.000
#> SRR1201712 3 0.2589 0.7377 0.000 0.116 0.884 0.000
#> SRR1201709 3 0.1716 0.7068 0.000 0.064 0.936 0.000
#> SRR1201711 3 0.2589 0.7377 0.000 0.116 0.884 0.000
#> SRR1201714 3 0.2647 0.7388 0.000 0.120 0.880 0.000
#> SRR1201713 3 0.2647 0.7388 0.000 0.120 0.880 0.000
#> SRR1201710 3 0.2647 0.7388 0.000 0.120 0.880 0.000
#> SRR1201719 3 0.4761 0.6056 0.000 0.372 0.628 0.000
#> SRR1201718 3 0.4830 0.5781 0.000 0.392 0.608 0.000
#> SRR1201721 3 0.4164 0.7229 0.000 0.264 0.736 0.000
#> SRR1201720 3 0.3873 0.7402 0.000 0.228 0.772 0.000
#> SRR1201723 3 0.2345 0.7309 0.000 0.100 0.900 0.000
#> SRR1201722 3 0.0469 0.6656 0.000 0.012 0.988 0.000
#> SRR1201725 3 0.4790 0.5945 0.000 0.380 0.620 0.000
#> SRR1201724 3 0.4985 0.4410 0.000 0.468 0.532 0.000
#> SRR1201726 3 0.2216 0.7241 0.000 0.092 0.908 0.000
#> SRR1201727 3 0.3172 0.7427 0.000 0.160 0.840 0.000
#> SRR1201731 3 0.3688 0.7410 0.000 0.208 0.792 0.000
#> SRR1201730 3 0.4304 0.7124 0.000 0.284 0.716 0.000
#> SRR1201734 2 0.3873 0.5581 0.000 0.772 0.228 0.000
#> SRR1201733 3 0.4843 0.3971 0.000 0.396 0.604 0.000
#> SRR1201736 3 0.3975 0.5391 0.000 0.240 0.760 0.000
#> SRR1201737 3 0.4040 0.7284 0.000 0.248 0.752 0.000
#> SRR1201739 3 0.4992 0.4353 0.000 0.476 0.524 0.000
#> SRR1201738 3 0.4776 0.6086 0.000 0.376 0.624 0.000
#> SRR1201742 3 0.3528 0.7280 0.000 0.192 0.808 0.000
#> SRR1201743 3 0.3837 0.7466 0.000 0.224 0.776 0.000
#> SRR1201745 2 0.4713 0.2365 0.000 0.640 0.360 0.000
#> SRR1201744 3 0.7629 0.2360 0.000 0.392 0.404 0.204
#> SRR1201749 3 0.4967 0.3230 0.000 0.452 0.548 0.000
#> SRR1201750 2 0.3172 0.6631 0.000 0.840 0.160 0.000
#> SRR1201752 3 0.3444 0.7476 0.000 0.184 0.816 0.000
#> SRR1201751 3 0.3356 0.7435 0.000 0.176 0.824 0.000
#> SRR1201754 2 0.4454 0.4137 0.000 0.692 0.308 0.000
#> SRR1201753 2 0.4941 0.0966 0.000 0.564 0.436 0.000
#> SRR1201758 4 0.0000 0.9805 0.000 0.000 0.000 1.000
#> SRR1201759 4 0.3356 0.8908 0.000 0.000 0.176 0.824
#> SRR1201760 3 0.3219 0.7505 0.000 0.164 0.836 0.000
#> SRR1201761 3 0.3219 0.7438 0.000 0.164 0.836 0.000
#> SRR1201763 4 0.0000 0.9805 0.000 0.000 0.000 1.000
#> SRR1201762 4 0.0000 0.9805 0.000 0.000 0.000 1.000
#> SRR1201764 3 0.4985 0.3878 0.000 0.468 0.532 0.000
#> SRR1201766 2 0.4250 0.4839 0.000 0.724 0.276 0.000
#> SRR1201768 2 0.0469 0.7611 0.000 0.988 0.012 0.000
#> SRR1201769 2 0.0469 0.7611 0.000 0.988 0.012 0.000
#> SRR1201767 2 0.0469 0.7611 0.000 0.988 0.012 0.000
#> SRR1201770 2 0.0469 0.7611 0.000 0.988 0.012 0.000
#> SRR1201771 2 0.0469 0.7611 0.000 0.988 0.012 0.000
#> SRR1201772 2 0.0469 0.7611 0.000 0.988 0.012 0.000
#> SRR1201773 2 0.0592 0.7614 0.000 0.984 0.016 0.000
#> SRR1201774 2 0.0469 0.7611 0.000 0.988 0.012 0.000
#> SRR1201786 2 0.0469 0.7615 0.000 0.988 0.012 0.000
#> SRR1201784 2 0.0469 0.7615 0.000 0.988 0.012 0.000
#> SRR1201785 2 0.0592 0.7616 0.000 0.984 0.016 0.000
#> SRR1201778 3 0.4866 0.3144 0.000 0.404 0.596 0.000
#> SRR1201779 2 0.0592 0.7616 0.000 0.984 0.016 0.000
#> SRR1201781 2 0.0592 0.7616 0.000 0.984 0.016 0.000
#> SRR1201780 2 0.0592 0.7616 0.000 0.984 0.016 0.000
#> SRR1201783 2 0.0592 0.7616 0.000 0.984 0.016 0.000
#> SRR1201782 2 0.0469 0.7615 0.000 0.988 0.012 0.000
#> SRR1201798 2 0.0592 0.7591 0.000 0.984 0.016 0.000
#> SRR1201797 2 0.0592 0.7591 0.000 0.984 0.016 0.000
#> SRR1201796 2 0.0707 0.7589 0.000 0.980 0.020 0.000
#> SRR1201795 2 0.0592 0.7591 0.000 0.984 0.016 0.000
#> SRR1201799 2 0.0592 0.7591 0.000 0.984 0.016 0.000
#> SRR1201794 2 0.0469 0.7601 0.000 0.988 0.012 0.000
#> SRR1201793 2 0.0707 0.7568 0.000 0.980 0.020 0.000
#> SRR1201792 2 0.0592 0.7591 0.000 0.984 0.016 0.000
#> SRR1201791 2 0.4843 0.1596 0.000 0.604 0.396 0.000
#> SRR1201807 2 0.0188 0.7605 0.000 0.996 0.004 0.000
#> SRR1201808 2 0.0188 0.7605 0.000 0.996 0.004 0.000
#> SRR1201803 2 0.0188 0.7605 0.000 0.996 0.004 0.000
#> SRR1201804 2 0.0188 0.7605 0.000 0.996 0.004 0.000
#> SRR1201805 2 0.0188 0.7605 0.000 0.996 0.004 0.000
#> SRR1201806 2 0.0188 0.7605 0.000 0.996 0.004 0.000
#> SRR1201801 2 0.0188 0.7605 0.000 0.996 0.004 0.000
#> SRR1201802 2 0.0188 0.7605 0.000 0.996 0.004 0.000
#> SRR1201800 2 0.4643 0.3233 0.000 0.656 0.344 0.000
#> SRR1201814 2 0.0188 0.7604 0.000 0.996 0.004 0.000
#> SRR1201816 2 0.0188 0.7604 0.000 0.996 0.004 0.000
#> SRR1201815 2 0.0188 0.7604 0.000 0.996 0.004 0.000
#> SRR1201819 2 0.0188 0.7604 0.000 0.996 0.004 0.000
#> SRR1201820 2 0.0188 0.7604 0.000 0.996 0.004 0.000
#> SRR1201813 2 0.4790 0.2010 0.000 0.620 0.380 0.000
#> SRR1201817 2 0.0336 0.7613 0.000 0.992 0.008 0.000
#> SRR1201818 2 0.0188 0.7604 0.000 0.996 0.004 0.000
#> SRR1201825 3 0.4740 0.6040 0.000 0.132 0.788 0.080
#> SRR1201827 3 0.4888 0.5422 0.000 0.412 0.588 0.000
#> SRR1201828 3 0.4898 0.5351 0.000 0.416 0.584 0.000
#> SRR1201826 3 0.4977 0.4426 0.000 0.460 0.540 0.000
#> SRR1201829 3 0.4898 0.5351 0.000 0.416 0.584 0.000
#> SRR1201830 3 0.4907 0.5308 0.000 0.420 0.580 0.000
#> SRR1201831 3 0.4907 0.5308 0.000 0.420 0.580 0.000
#> SRR1201832 3 0.4898 0.5351 0.000 0.416 0.584 0.000
#> SRR1201833 3 0.4907 0.5308 0.000 0.420 0.580 0.000
#> SRR1201865 3 0.4222 0.6755 0.000 0.272 0.728 0.000
#> SRR1201866 3 0.4222 0.6755 0.000 0.272 0.728 0.000
#> SRR1201867 3 0.4222 0.6755 0.000 0.272 0.728 0.000
#> SRR1201861 3 0.4304 0.6831 0.000 0.284 0.716 0.000
#> SRR1201862 3 0.4431 0.6782 0.000 0.304 0.696 0.000
#> SRR1201863 3 0.4250 0.6709 0.000 0.276 0.724 0.000
#> SRR1201859 3 0.4387 0.5620 0.000 0.236 0.752 0.012
#> SRR1201864 3 0.4331 0.6782 0.000 0.288 0.712 0.000
#> SRR1201860 3 0.4250 0.6819 0.000 0.276 0.724 0.000
#> SRR1201873 3 0.2216 0.7281 0.000 0.092 0.908 0.000
#> SRR1201871 3 0.2281 0.6838 0.000 0.096 0.904 0.000
#> SRR1201872 3 0.2408 0.7343 0.000 0.104 0.896 0.000
#> SRR1201980 3 0.3486 0.7465 0.000 0.188 0.812 0.000
#> SRR1201979 3 0.3400 0.7497 0.000 0.180 0.820 0.000
#> SRR1201982 3 0.4304 0.7029 0.000 0.284 0.716 0.000
#> SRR1201981 3 0.4250 0.7212 0.000 0.276 0.724 0.000
#> SRR1201998 3 0.4713 0.6395 0.000 0.360 0.640 0.000
#> SRR1201996 3 0.4916 0.5589 0.000 0.424 0.576 0.000
#> SRR1201997 3 0.4843 0.5861 0.000 0.396 0.604 0.000
#> SRR1202005 2 0.4746 0.2155 0.000 0.632 0.368 0.000
#> SRR1202006 2 0.4941 -0.0234 0.000 0.564 0.436 0.000
#> SRR1202088 3 0.3024 0.7475 0.000 0.148 0.852 0.000
#> SRR1202087 3 0.2081 0.7167 0.000 0.084 0.916 0.000
#> SRR1202093 3 0.3907 0.7449 0.000 0.232 0.768 0.000
#> SRR1202092 3 0.3400 0.7294 0.000 0.180 0.820 0.000
#> SRR1202288 2 0.4843 0.1703 0.000 0.604 0.396 0.000
#> SRR1202289 2 0.0707 0.7614 0.000 0.980 0.020 0.000
#> SRR1202299 2 0.0000 0.7578 0.000 1.000 0.000 0.000
#> SRR1202298 2 0.4356 0.4442 0.000 0.708 0.292 0.000
#> SRR1202303 4 0.0000 0.9805 0.000 0.000 0.000 1.000
#> SRR1202372 2 0.0707 0.7597 0.000 0.980 0.020 0.000
#> SRR1202371 3 0.4790 0.4059 0.000 0.380 0.620 0.000
#> SRR1202563 3 0.4961 0.3962 0.000 0.448 0.552 0.000
#> SRR1202565 3 0.4605 0.6761 0.000 0.336 0.664 0.000
#> SRR1202564 3 0.4679 0.6614 0.000 0.352 0.648 0.000
#> SRR1202649 3 0.4072 0.5394 0.000 0.252 0.748 0.000
#> SRR1202650 3 0.4585 0.5125 0.000 0.332 0.668 0.000
#> SRR1202651 2 0.4564 0.3289 0.000 0.672 0.328 0.000
#> SRR1202843 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1202845 2 0.4382 0.4268 0.000 0.704 0.296 0.000
#> SRR1202847 2 0.4697 0.2378 0.000 0.644 0.356 0.000
#> SRR1202846 2 0.4697 0.2378 0.000 0.644 0.356 0.000
#> SRR1202945 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203132 3 0.4522 0.6749 0.000 0.320 0.680 0.000
#> SRR1203131 3 0.4008 0.7316 0.000 0.244 0.756 0.000
#> SRR1203133 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203775 1 0.0188 0.9958 0.996 0.000 0.000 0.004
#> SRR1203800 1 0.0188 0.9958 0.996 0.000 0.000 0.004
#> SRR1203801 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203807 1 0.0707 0.9799 0.980 0.000 0.000 0.020
#> SRR1203808 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203827 4 0.0000 0.9805 0.000 0.000 0.000 1.000
#> SRR1203828 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203842 4 0.0000 0.9805 0.000 0.000 0.000 1.000
#> SRR1203843 1 0.0000 0.9996 1.000 0.000 0.000 0.000
#> SRR1203845 2 0.4925 -0.0199 0.000 0.572 0.428 0.000
#> SRR1203844 2 0.4543 0.3418 0.000 0.676 0.324 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.2732 0.7105 0.000 0.840 0.160 0.000 0.000
#> SRR1201590 2 0.4990 0.5410 0.000 0.600 0.360 0.000 0.040
#> SRR1201593 2 0.2966 0.7102 0.000 0.816 0.184 0.000 0.000
#> SRR1201592 2 0.4288 0.6389 0.000 0.664 0.324 0.000 0.012
#> SRR1201617 2 0.3109 0.7093 0.000 0.800 0.200 0.000 0.000
#> SRR1201616 2 0.3305 0.7052 0.000 0.776 0.224 0.000 0.000
#> SRR1201619 2 0.5157 0.3340 0.000 0.520 0.440 0.000 0.040
#> SRR1201618 3 0.4793 0.5078 0.000 0.260 0.684 0.000 0.056
#> SRR1201620 2 0.4084 0.6429 0.000 0.668 0.328 0.000 0.004
#> SRR1201621 2 0.2648 0.7094 0.000 0.848 0.152 0.000 0.000
#> SRR1201623 3 0.6588 0.4255 0.000 0.208 0.400 0.000 0.392
#> SRR1201622 3 0.6395 0.3343 0.000 0.100 0.540 0.028 0.332
#> SRR1201624 4 0.0000 0.9693 0.000 0.000 0.000 1.000 0.000
#> SRR1201625 4 0.0000 0.9693 0.000 0.000 0.000 1.000 0.000
#> SRR1201626 4 0.0000 0.9693 0.000 0.000 0.000 1.000 0.000
#> SRR1201627 4 0.0000 0.9693 0.000 0.000 0.000 1.000 0.000
#> SRR1201628 3 0.4269 0.6139 0.000 0.188 0.756 0.000 0.056
#> SRR1201629 3 0.4642 0.5234 0.000 0.308 0.660 0.000 0.032
#> SRR1201630 2 0.4547 0.6919 0.000 0.704 0.252 0.000 0.044
#> SRR1201631 2 0.4084 0.6307 0.000 0.668 0.328 0.000 0.004
#> SRR1201641 2 0.4211 0.5868 0.000 0.636 0.360 0.000 0.004
#> SRR1201640 2 0.3857 0.6501 0.000 0.688 0.312 0.000 0.000
#> SRR1201643 3 0.4682 0.4502 0.000 0.356 0.620 0.000 0.024
#> SRR1201644 2 0.4557 0.2676 0.000 0.516 0.476 0.000 0.008
#> SRR1201661 2 0.4040 0.6915 0.000 0.724 0.260 0.000 0.016
#> SRR1201662 2 0.3990 0.6500 0.000 0.688 0.308 0.000 0.004
#> SRR1201663 3 0.7284 0.3649 0.000 0.092 0.480 0.324 0.104
#> SRR1201664 3 0.7284 0.3617 0.000 0.092 0.480 0.324 0.104
#> SRR1201665 2 0.4897 0.3841 0.000 0.516 0.460 0.000 0.024
#> SRR1201666 2 0.4193 0.6772 0.000 0.720 0.256 0.000 0.024
#> SRR1201667 2 0.4026 0.6824 0.000 0.736 0.244 0.000 0.020
#> SRR1201668 3 0.6951 0.2372 0.000 0.072 0.436 0.412 0.080
#> SRR1201670 3 0.7284 0.3649 0.000 0.092 0.480 0.324 0.104
#> SRR1201669 3 0.7284 0.3649 0.000 0.092 0.480 0.324 0.104
#> SRR1201673 3 0.3769 0.6007 0.000 0.180 0.788 0.000 0.032
#> SRR1201672 3 0.3769 0.6007 0.000 0.180 0.788 0.000 0.032
#> SRR1201671 3 0.4495 0.6187 0.000 0.200 0.736 0.000 0.064
#> SRR1201677 3 0.3769 0.6007 0.000 0.180 0.788 0.000 0.032
#> SRR1201676 3 0.3769 0.6007 0.000 0.180 0.788 0.000 0.032
#> SRR1201675 3 0.3769 0.6007 0.000 0.180 0.788 0.000 0.032
#> SRR1201674 3 0.3769 0.6007 0.000 0.180 0.788 0.000 0.032
#> SRR1201678 3 0.3769 0.6007 0.000 0.180 0.788 0.000 0.032
#> SRR1201682 2 0.4400 0.6908 0.000 0.736 0.212 0.000 0.052
#> SRR1201683 2 0.4400 0.6908 0.000 0.736 0.212 0.000 0.052
#> SRR1201680 2 0.4295 0.6922 0.000 0.740 0.216 0.000 0.044
#> SRR1201681 2 0.4369 0.6918 0.000 0.740 0.208 0.000 0.052
#> SRR1201679 2 0.4898 0.5307 0.000 0.592 0.376 0.000 0.032
#> SRR1201686 3 0.7322 0.3593 0.000 0.092 0.476 0.324 0.108
#> SRR1201687 3 0.7322 0.3593 0.000 0.092 0.476 0.324 0.108
#> SRR1201688 3 0.7322 0.3593 0.000 0.092 0.476 0.324 0.108
#> SRR1201689 3 0.7322 0.3593 0.000 0.092 0.476 0.324 0.108
#> SRR1201685 4 0.2795 0.8641 0.000 0.000 0.100 0.872 0.028
#> SRR1201692 3 0.3694 0.6069 0.000 0.172 0.796 0.000 0.032
#> SRR1201691 3 0.3694 0.6069 0.000 0.172 0.796 0.000 0.032
#> SRR1201690 3 0.4756 0.5635 0.000 0.288 0.668 0.000 0.044
#> SRR1201696 3 0.3694 0.6069 0.000 0.172 0.796 0.000 0.032
#> SRR1201695 3 0.3694 0.6069 0.000 0.172 0.796 0.000 0.032
#> SRR1201694 3 0.3772 0.6088 0.000 0.172 0.792 0.000 0.036
#> SRR1201693 3 0.3694 0.6069 0.000 0.172 0.796 0.000 0.032
#> SRR1201697 3 0.3694 0.6069 0.000 0.172 0.796 0.000 0.032
#> SRR1201698 3 0.4823 0.4958 0.000 0.316 0.644 0.000 0.040
#> SRR1201700 3 0.6564 0.4450 0.000 0.204 0.420 0.000 0.376
#> SRR1201708 5 0.2127 0.8885 0.000 0.000 0.108 0.000 0.892
#> SRR1201707 5 0.2127 0.8885 0.000 0.000 0.108 0.000 0.892
#> SRR1201706 5 0.2127 0.8885 0.000 0.000 0.108 0.000 0.892
#> SRR1201702 5 0.2127 0.8885 0.000 0.000 0.108 0.000 0.892
#> SRR1201705 5 0.2127 0.8885 0.000 0.000 0.108 0.000 0.892
#> SRR1201701 5 0.2127 0.8885 0.000 0.000 0.108 0.000 0.892
#> SRR1201704 5 0.2127 0.8885 0.000 0.000 0.108 0.000 0.892
#> SRR1201703 5 0.2127 0.8885 0.000 0.000 0.108 0.000 0.892
#> SRR1201716 5 0.2329 0.8933 0.000 0.000 0.124 0.000 0.876
#> SRR1201715 5 0.2329 0.8933 0.000 0.000 0.124 0.000 0.876
#> SRR1201717 5 0.2329 0.8933 0.000 0.000 0.124 0.000 0.876
#> SRR1201712 5 0.2329 0.8933 0.000 0.000 0.124 0.000 0.876
#> SRR1201709 3 0.5785 0.2187 0.000 0.092 0.504 0.000 0.404
#> SRR1201711 5 0.2329 0.8933 0.000 0.000 0.124 0.000 0.876
#> SRR1201714 5 0.2329 0.8933 0.000 0.000 0.124 0.000 0.876
#> SRR1201713 5 0.2329 0.8933 0.000 0.000 0.124 0.000 0.876
#> SRR1201710 5 0.2329 0.8933 0.000 0.000 0.124 0.000 0.876
#> SRR1201719 2 0.4218 0.6175 0.000 0.660 0.332 0.000 0.008
#> SRR1201718 2 0.4339 0.6213 0.000 0.652 0.336 0.000 0.012
#> SRR1201721 3 0.5199 0.5457 0.000 0.292 0.636 0.000 0.072
#> SRR1201720 3 0.5640 0.5178 0.000 0.304 0.592 0.000 0.104
#> SRR1201723 3 0.7284 0.3649 0.000 0.092 0.480 0.324 0.104
#> SRR1201722 3 0.7284 0.3649 0.000 0.092 0.480 0.324 0.104
#> SRR1201725 2 0.4218 0.6150 0.000 0.660 0.332 0.000 0.008
#> SRR1201724 2 0.4420 0.6670 0.000 0.692 0.280 0.000 0.028
#> SRR1201726 3 0.5779 0.2215 0.000 0.092 0.508 0.000 0.400
#> SRR1201727 5 0.5872 0.1785 0.000 0.168 0.232 0.000 0.600
#> SRR1201731 3 0.4960 0.5962 0.000 0.268 0.668 0.000 0.064
#> SRR1201730 3 0.4420 0.5644 0.000 0.280 0.692 0.000 0.028
#> SRR1201734 2 0.3336 0.7032 0.000 0.772 0.228 0.000 0.000
#> SRR1201733 2 0.4708 0.4668 0.000 0.548 0.436 0.000 0.016
#> SRR1201736 3 0.4558 0.5609 0.000 0.216 0.724 0.000 0.060
#> SRR1201737 3 0.5399 -0.0137 0.000 0.448 0.496 0.000 0.056
#> SRR1201739 2 0.3656 0.6906 0.000 0.784 0.196 0.000 0.020
#> SRR1201738 2 0.4697 0.5282 0.000 0.592 0.388 0.000 0.020
#> SRR1201742 3 0.4817 0.5631 0.000 0.264 0.680 0.000 0.056
#> SRR1201743 3 0.5156 0.5079 0.000 0.320 0.620 0.000 0.060
#> SRR1201745 2 0.4047 0.6461 0.000 0.676 0.320 0.000 0.004
#> SRR1201744 2 0.6271 0.4067 0.000 0.508 0.360 0.124 0.008
#> SRR1201749 2 0.4517 0.5737 0.000 0.600 0.388 0.000 0.012
#> SRR1201750 2 0.3882 0.6977 0.000 0.788 0.168 0.000 0.044
#> SRR1201752 3 0.5029 0.5667 0.000 0.292 0.648 0.000 0.060
#> SRR1201751 3 0.4830 0.5832 0.000 0.256 0.684 0.000 0.060
#> SRR1201754 2 0.3480 0.6923 0.000 0.752 0.248 0.000 0.000
#> SRR1201753 2 0.4232 0.6424 0.000 0.676 0.312 0.000 0.012
#> SRR1201758 4 0.0000 0.9693 0.000 0.000 0.000 1.000 0.000
#> SRR1201759 4 0.3649 0.7871 0.000 0.000 0.152 0.808 0.040
#> SRR1201760 3 0.5640 0.5264 0.000 0.304 0.592 0.000 0.104
#> SRR1201761 3 0.6672 0.4873 0.000 0.272 0.440 0.000 0.288
#> SRR1201763 4 0.0000 0.9693 0.000 0.000 0.000 1.000 0.000
#> SRR1201762 4 0.0000 0.9693 0.000 0.000 0.000 1.000 0.000
#> SRR1201764 3 0.4066 0.4645 0.000 0.324 0.672 0.004 0.000
#> SRR1201766 2 0.4114 0.6873 0.000 0.712 0.272 0.000 0.016
#> SRR1201768 2 0.3239 0.6826 0.000 0.852 0.068 0.000 0.080
#> SRR1201769 2 0.3239 0.6826 0.000 0.852 0.068 0.000 0.080
#> SRR1201767 2 0.3239 0.6826 0.000 0.852 0.068 0.000 0.080
#> SRR1201770 2 0.3239 0.6826 0.000 0.852 0.068 0.000 0.080
#> SRR1201771 2 0.3239 0.6826 0.000 0.852 0.068 0.000 0.080
#> SRR1201772 2 0.3239 0.6826 0.000 0.852 0.068 0.000 0.080
#> SRR1201773 2 0.3301 0.6848 0.000 0.848 0.072 0.000 0.080
#> SRR1201774 2 0.3239 0.6826 0.000 0.852 0.068 0.000 0.080
#> SRR1201786 2 0.3239 0.6847 0.000 0.852 0.068 0.000 0.080
#> SRR1201784 2 0.3239 0.6847 0.000 0.852 0.068 0.000 0.080
#> SRR1201785 2 0.3239 0.6847 0.000 0.852 0.068 0.000 0.080
#> SRR1201778 2 0.4793 0.4587 0.000 0.544 0.436 0.000 0.020
#> SRR1201779 2 0.3239 0.6847 0.000 0.852 0.068 0.000 0.080
#> SRR1201781 2 0.3301 0.6861 0.000 0.848 0.072 0.000 0.080
#> SRR1201780 2 0.3239 0.6847 0.000 0.852 0.068 0.000 0.080
#> SRR1201783 2 0.3239 0.6847 0.000 0.852 0.068 0.000 0.080
#> SRR1201782 2 0.3239 0.6847 0.000 0.852 0.068 0.000 0.080
#> SRR1201798 2 0.0162 0.6542 0.000 0.996 0.004 0.000 0.000
#> SRR1201797 2 0.0162 0.6542 0.000 0.996 0.004 0.000 0.000
#> SRR1201796 2 0.0290 0.6569 0.000 0.992 0.008 0.000 0.000
#> SRR1201795 2 0.0162 0.6542 0.000 0.996 0.004 0.000 0.000
#> SRR1201799 2 0.0162 0.6542 0.000 0.996 0.004 0.000 0.000
#> SRR1201794 2 0.0162 0.6542 0.000 0.996 0.004 0.000 0.000
#> SRR1201793 2 0.0162 0.6542 0.000 0.996 0.004 0.000 0.000
#> SRR1201792 2 0.0162 0.6542 0.000 0.996 0.004 0.000 0.000
#> SRR1201791 2 0.3661 0.6765 0.000 0.724 0.276 0.000 0.000
#> SRR1201807 2 0.0324 0.6549 0.000 0.992 0.004 0.000 0.004
#> SRR1201808 2 0.0324 0.6549 0.000 0.992 0.004 0.000 0.004
#> SRR1201803 2 0.0324 0.6549 0.000 0.992 0.004 0.000 0.004
#> SRR1201804 2 0.0324 0.6549 0.000 0.992 0.004 0.000 0.004
#> SRR1201805 2 0.0324 0.6549 0.000 0.992 0.004 0.000 0.004
#> SRR1201806 2 0.0324 0.6549 0.000 0.992 0.004 0.000 0.004
#> SRR1201801 2 0.0324 0.6549 0.000 0.992 0.004 0.000 0.004
#> SRR1201802 2 0.0324 0.6549 0.000 0.992 0.004 0.000 0.004
#> SRR1201800 2 0.3661 0.6823 0.000 0.724 0.276 0.000 0.000
#> SRR1201814 2 0.0162 0.6542 0.000 0.996 0.004 0.000 0.000
#> SRR1201816 2 0.0162 0.6542 0.000 0.996 0.004 0.000 0.000
#> SRR1201815 2 0.0162 0.6542 0.000 0.996 0.004 0.000 0.000
#> SRR1201819 2 0.0162 0.6542 0.000 0.996 0.004 0.000 0.000
#> SRR1201820 2 0.0162 0.6542 0.000 0.996 0.004 0.000 0.000
#> SRR1201813 2 0.3612 0.6797 0.000 0.732 0.268 0.000 0.000
#> SRR1201817 2 0.0290 0.6564 0.000 0.992 0.008 0.000 0.000
#> SRR1201818 2 0.0162 0.6542 0.000 0.996 0.004 0.000 0.000
#> SRR1201825 3 0.7362 0.3778 0.000 0.104 0.528 0.140 0.228
#> SRR1201827 2 0.5109 0.2592 0.000 0.504 0.460 0.000 0.036
#> SRR1201828 2 0.5168 0.2801 0.000 0.508 0.452 0.000 0.040
#> SRR1201826 2 0.4561 0.1375 0.000 0.504 0.488 0.000 0.008
#> SRR1201829 2 0.5103 0.2864 0.000 0.512 0.452 0.000 0.036
#> SRR1201830 2 0.5161 0.3061 0.000 0.516 0.444 0.000 0.040
#> SRR1201831 2 0.5161 0.3061 0.000 0.516 0.444 0.000 0.040
#> SRR1201832 2 0.5168 0.2801 0.000 0.508 0.452 0.000 0.040
#> SRR1201833 2 0.5168 0.2801 0.000 0.508 0.452 0.000 0.040
#> SRR1201865 3 0.3183 0.6191 0.000 0.156 0.828 0.000 0.016
#> SRR1201866 3 0.3304 0.6241 0.000 0.168 0.816 0.000 0.016
#> SRR1201867 3 0.3183 0.6191 0.000 0.156 0.828 0.000 0.016
#> SRR1201861 3 0.3381 0.6235 0.000 0.176 0.808 0.000 0.016
#> SRR1201862 3 0.3492 0.6235 0.000 0.188 0.796 0.000 0.016
#> SRR1201863 3 0.3419 0.6269 0.000 0.180 0.804 0.000 0.016
#> SRR1201859 3 0.5015 0.6107 0.000 0.148 0.748 0.048 0.056
#> SRR1201864 3 0.3224 0.6192 0.000 0.160 0.824 0.000 0.016
#> SRR1201860 3 0.3304 0.6226 0.000 0.168 0.816 0.000 0.016
#> SRR1201873 3 0.6298 0.3329 0.000 0.152 0.436 0.000 0.412
#> SRR1201871 3 0.5752 0.2625 0.000 0.092 0.524 0.000 0.384
#> SRR1201872 3 0.6325 0.3352 0.000 0.156 0.428 0.000 0.416
#> SRR1201980 3 0.5104 0.5734 0.000 0.284 0.648 0.000 0.068
#> SRR1201979 3 0.4666 0.6049 0.000 0.240 0.704 0.000 0.056
#> SRR1201982 3 0.5144 0.5348 0.000 0.304 0.632 0.000 0.064
#> SRR1201981 3 0.4637 0.5443 0.000 0.292 0.672 0.000 0.036
#> SRR1201998 2 0.5102 0.4642 0.000 0.580 0.376 0.000 0.044
#> SRR1201996 2 0.4074 0.5780 0.000 0.636 0.364 0.000 0.000
#> SRR1201997 2 0.4371 0.5921 0.000 0.644 0.344 0.000 0.012
#> SRR1202005 2 0.3949 0.6551 0.000 0.696 0.300 0.000 0.004
#> SRR1202006 2 0.4108 0.6473 0.000 0.684 0.308 0.000 0.008
#> SRR1202088 5 0.6657 -0.4590 0.000 0.228 0.372 0.000 0.400
#> SRR1202087 3 0.5940 0.2658 0.000 0.096 0.516 0.004 0.384
#> SRR1202093 3 0.5139 0.5019 0.000 0.316 0.624 0.000 0.060
#> SRR1202092 3 0.4096 0.6431 0.000 0.176 0.772 0.000 0.052
#> SRR1202288 2 0.4003 0.6791 0.000 0.704 0.288 0.000 0.008
#> SRR1202289 2 0.2230 0.7031 0.000 0.884 0.116 0.000 0.000
#> SRR1202299 2 0.1908 0.6968 0.000 0.908 0.092 0.000 0.000
#> SRR1202298 2 0.3635 0.6941 0.000 0.748 0.248 0.000 0.004
#> SRR1202303 4 0.0000 0.9693 0.000 0.000 0.000 1.000 0.000
#> SRR1202372 2 0.1671 0.6923 0.000 0.924 0.076 0.000 0.000
#> SRR1202371 2 0.4922 0.4757 0.000 0.552 0.424 0.004 0.020
#> SRR1202563 2 0.5048 0.5040 0.000 0.580 0.380 0.000 0.040
#> SRR1202565 2 0.5087 0.6360 0.000 0.644 0.292 0.000 0.064
#> SRR1202564 2 0.4949 0.6463 0.000 0.656 0.288 0.000 0.056
#> SRR1202649 3 0.5035 0.5581 0.000 0.212 0.712 0.020 0.056
#> SRR1202650 2 0.4735 0.3896 0.000 0.524 0.460 0.000 0.016
#> SRR1202651 2 0.3752 0.6636 0.000 0.708 0.292 0.000 0.000
#> SRR1202843 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1202845 2 0.4193 0.6937 0.000 0.720 0.256 0.000 0.024
#> SRR1202847 2 0.4572 0.6736 0.000 0.684 0.280 0.000 0.036
#> SRR1202846 2 0.4594 0.6703 0.000 0.680 0.284 0.000 0.036
#> SRR1202945 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.4863 0.5804 0.000 0.272 0.672 0.000 0.056
#> SRR1203131 3 0.4525 0.6145 0.000 0.220 0.724 0.000 0.056
#> SRR1203133 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0162 0.9958 0.996 0.000 0.000 0.004 0.000
#> SRR1203800 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0609 0.9800 0.980 0.000 0.000 0.020 0.000
#> SRR1203808 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203827 4 0.0000 0.9693 0.000 0.000 0.000 1.000 0.000
#> SRR1203828 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203842 4 0.0000 0.9693 0.000 0.000 0.000 1.000 0.000
#> SRR1203843 1 0.0000 0.9997 1.000 0.000 0.000 0.000 0.000
#> SRR1203845 2 0.4009 0.6463 0.000 0.684 0.312 0.000 0.004
#> SRR1203844 2 0.3741 0.6809 0.000 0.732 0.264 0.000 0.004
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 2 0.3647 0.43885 0.000 0.640 0.360 0.000 0.000 0.000
#> SRR1201590 3 0.5438 0.16199 0.000 0.280 0.560 0.000 0.000 0.160
#> SRR1201593 2 0.5222 0.49353 0.000 0.584 0.288 0.000 0.000 0.128
#> SRR1201592 2 0.4873 0.32002 0.000 0.520 0.420 0.000 0.000 0.060
#> SRR1201617 2 0.3898 0.47038 0.000 0.652 0.336 0.000 0.000 0.012
#> SRR1201616 2 0.5196 0.34829 0.000 0.520 0.396 0.000 0.004 0.080
#> SRR1201619 3 0.4680 0.32939 0.000 0.264 0.652 0.000 0.000 0.084
#> SRR1201618 3 0.3146 0.60072 0.000 0.080 0.848 0.000 0.012 0.060
#> SRR1201620 2 0.4893 0.36646 0.000 0.536 0.400 0.000 0.000 0.064
#> SRR1201621 2 0.4685 0.52543 0.000 0.664 0.240 0.000 0.000 0.096
#> SRR1201623 3 0.4589 0.37458 0.000 0.008 0.580 0.000 0.384 0.028
#> SRR1201622 3 0.4862 0.42987 0.000 0.008 0.608 0.012 0.340 0.032
#> SRR1201624 4 0.0000 0.91531 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201625 4 0.0000 0.91531 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201626 4 0.0000 0.91531 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201627 4 0.0000 0.91531 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201628 3 0.2351 0.62846 0.000 0.032 0.904 0.000 0.036 0.028
#> SRR1201629 3 0.2706 0.62057 0.000 0.056 0.876 0.000 0.008 0.060
#> SRR1201630 2 0.6158 0.27216 0.000 0.380 0.368 0.000 0.004 0.248
#> SRR1201631 3 0.5948 0.01080 0.000 0.280 0.488 0.000 0.004 0.228
#> SRR1201641 3 0.5812 -0.04298 0.000 0.348 0.480 0.000 0.004 0.168
#> SRR1201640 3 0.5592 0.01677 0.000 0.340 0.504 0.000 0.000 0.156
#> SRR1201643 3 0.2542 0.61418 0.000 0.080 0.884 0.000 0.020 0.016
#> SRR1201644 3 0.4552 0.49119 0.000 0.172 0.700 0.000 0.000 0.128
#> SRR1201661 2 0.5276 0.43293 0.000 0.540 0.348 0.000 0.000 0.112
#> SRR1201662 2 0.3881 0.38787 0.000 0.600 0.396 0.000 0.000 0.004
#> SRR1201663 3 0.6812 0.18710 0.000 0.000 0.428 0.304 0.060 0.208
#> SRR1201664 3 0.6812 0.18710 0.000 0.000 0.428 0.304 0.060 0.208
#> SRR1201665 3 0.4637 0.36373 0.000 0.248 0.672 0.000 0.004 0.076
#> SRR1201666 3 0.5961 -0.14785 0.000 0.336 0.432 0.000 0.000 0.232
#> SRR1201667 3 0.5992 -0.17203 0.000 0.340 0.420 0.000 0.000 0.240
#> SRR1201668 4 0.6164 -0.07587 0.000 0.000 0.388 0.448 0.032 0.132
#> SRR1201670 3 0.6812 0.18710 0.000 0.000 0.428 0.304 0.060 0.208
#> SRR1201669 3 0.6812 0.18710 0.000 0.000 0.428 0.304 0.060 0.208
#> SRR1201673 3 0.3460 0.58432 0.000 0.008 0.796 0.000 0.028 0.168
#> SRR1201672 3 0.3460 0.58432 0.000 0.008 0.796 0.000 0.028 0.168
#> SRR1201671 3 0.2198 0.62895 0.000 0.024 0.912 0.000 0.032 0.032
#> SRR1201677 3 0.3460 0.58432 0.000 0.008 0.796 0.000 0.028 0.168
#> SRR1201676 3 0.3460 0.58432 0.000 0.008 0.796 0.000 0.028 0.168
#> SRR1201675 3 0.3460 0.58432 0.000 0.008 0.796 0.000 0.028 0.168
#> SRR1201674 3 0.3460 0.58432 0.000 0.008 0.796 0.000 0.028 0.168
#> SRR1201678 3 0.3460 0.58432 0.000 0.008 0.796 0.000 0.028 0.168
#> SRR1201682 2 0.5640 0.48771 0.000 0.532 0.268 0.000 0.000 0.200
#> SRR1201683 2 0.5684 0.47402 0.000 0.520 0.280 0.000 0.000 0.200
#> SRR1201680 2 0.5718 0.46657 0.000 0.512 0.284 0.000 0.000 0.204
#> SRR1201681 2 0.5697 0.46867 0.000 0.516 0.284 0.000 0.000 0.200
#> SRR1201679 3 0.6068 -0.13833 0.000 0.332 0.436 0.000 0.004 0.228
#> SRR1201686 3 0.6812 0.18710 0.000 0.000 0.428 0.304 0.060 0.208
#> SRR1201687 3 0.6812 0.18710 0.000 0.000 0.428 0.304 0.060 0.208
#> SRR1201688 3 0.6812 0.18710 0.000 0.000 0.428 0.304 0.060 0.208
#> SRR1201689 3 0.6812 0.18710 0.000 0.000 0.428 0.304 0.060 0.208
#> SRR1201685 4 0.2807 0.82228 0.000 0.000 0.028 0.868 0.016 0.088
#> SRR1201692 3 0.3698 0.57927 0.000 0.020 0.788 0.000 0.028 0.164
#> SRR1201691 3 0.3698 0.57927 0.000 0.020 0.788 0.000 0.028 0.164
#> SRR1201690 3 0.1957 0.62851 0.000 0.048 0.920 0.000 0.024 0.008
#> SRR1201696 3 0.3698 0.57927 0.000 0.020 0.788 0.000 0.028 0.164
#> SRR1201695 3 0.3698 0.57927 0.000 0.020 0.788 0.000 0.028 0.164
#> SRR1201694 3 0.3743 0.57956 0.000 0.024 0.788 0.000 0.028 0.160
#> SRR1201693 3 0.3698 0.57927 0.000 0.020 0.788 0.000 0.028 0.164
#> SRR1201697 3 0.3698 0.57927 0.000 0.020 0.788 0.000 0.028 0.164
#> SRR1201698 3 0.3630 0.60435 0.000 0.064 0.816 0.000 0.020 0.100
#> SRR1201700 3 0.4680 0.38328 0.000 0.012 0.576 0.000 0.384 0.028
#> SRR1201708 5 0.1141 0.93707 0.000 0.000 0.052 0.000 0.948 0.000
#> SRR1201707 5 0.1141 0.93707 0.000 0.000 0.052 0.000 0.948 0.000
#> SRR1201706 5 0.1141 0.93707 0.000 0.000 0.052 0.000 0.948 0.000
#> SRR1201702 5 0.1141 0.93707 0.000 0.000 0.052 0.000 0.948 0.000
#> SRR1201705 5 0.1141 0.93707 0.000 0.000 0.052 0.000 0.948 0.000
#> SRR1201701 5 0.1141 0.93707 0.000 0.000 0.052 0.000 0.948 0.000
#> SRR1201704 5 0.1141 0.93707 0.000 0.000 0.052 0.000 0.948 0.000
#> SRR1201703 5 0.1141 0.93707 0.000 0.000 0.052 0.000 0.948 0.000
#> SRR1201716 5 0.1387 0.93956 0.000 0.000 0.068 0.000 0.932 0.000
#> SRR1201715 5 0.1444 0.93663 0.000 0.000 0.072 0.000 0.928 0.000
#> SRR1201717 5 0.1387 0.93956 0.000 0.000 0.068 0.000 0.932 0.000
#> SRR1201712 5 0.1387 0.93956 0.000 0.000 0.068 0.000 0.932 0.000
#> SRR1201709 3 0.4615 0.36352 0.000 0.008 0.568 0.000 0.396 0.028
#> SRR1201711 5 0.1387 0.93956 0.000 0.000 0.068 0.000 0.932 0.000
#> SRR1201714 5 0.1387 0.93956 0.000 0.000 0.068 0.000 0.932 0.000
#> SRR1201713 5 0.1387 0.93956 0.000 0.000 0.068 0.000 0.932 0.000
#> SRR1201710 5 0.1387 0.93956 0.000 0.000 0.068 0.000 0.932 0.000
#> SRR1201719 2 0.4234 0.29350 0.000 0.544 0.440 0.000 0.000 0.016
#> SRR1201718 2 0.5535 0.24255 0.000 0.436 0.432 0.000 0.000 0.132
#> SRR1201721 3 0.3158 0.62718 0.000 0.052 0.856 0.000 0.032 0.060
#> SRR1201720 3 0.3157 0.62112 0.000 0.048 0.848 0.000 0.088 0.016
#> SRR1201723 3 0.6812 0.18710 0.000 0.000 0.428 0.304 0.060 0.208
#> SRR1201722 3 0.6812 0.18710 0.000 0.000 0.428 0.304 0.060 0.208
#> SRR1201725 2 0.5224 0.24589 0.000 0.468 0.440 0.000 0.000 0.092
#> SRR1201724 2 0.5592 0.41507 0.000 0.504 0.340 0.000 0.000 0.156
#> SRR1201726 3 0.4630 0.34316 0.000 0.008 0.560 0.000 0.404 0.028
#> SRR1201727 5 0.3699 0.35085 0.000 0.004 0.336 0.000 0.660 0.000
#> SRR1201731 3 0.3342 0.62975 0.000 0.040 0.844 0.000 0.044 0.072
#> SRR1201730 3 0.3007 0.62419 0.000 0.040 0.860 0.000 0.020 0.080
#> SRR1201734 2 0.4433 0.46700 0.000 0.616 0.344 0.000 0.000 0.040
#> SRR1201733 3 0.5848 -0.10630 0.000 0.356 0.468 0.000 0.004 0.172
#> SRR1201736 3 0.2838 0.61666 0.000 0.056 0.872 0.000 0.016 0.056
#> SRR1201737 3 0.4176 0.48649 0.000 0.200 0.740 0.000 0.016 0.044
#> SRR1201739 2 0.5400 0.48849 0.000 0.572 0.264 0.000 0.000 0.164
#> SRR1201738 3 0.5736 -0.01448 0.000 0.320 0.492 0.000 0.000 0.188
#> SRR1201742 3 0.2607 0.62622 0.000 0.056 0.888 0.000 0.028 0.028
#> SRR1201743 3 0.3413 0.62237 0.000 0.068 0.836 0.000 0.024 0.072
#> SRR1201745 2 0.6591 0.34675 0.000 0.408 0.336 0.024 0.004 0.228
#> SRR1201744 3 0.7755 -0.09639 0.000 0.216 0.316 0.196 0.004 0.268
#> SRR1201749 3 0.5965 -0.00145 0.000 0.280 0.484 0.000 0.004 0.232
#> SRR1201750 2 0.6237 0.30261 0.000 0.360 0.336 0.000 0.004 0.300
#> SRR1201752 3 0.2959 0.62832 0.000 0.048 0.868 0.000 0.028 0.056
#> SRR1201751 3 0.1777 0.63032 0.000 0.032 0.932 0.000 0.024 0.012
#> SRR1201754 2 0.4515 0.52792 0.000 0.656 0.280 0.000 0.000 0.064
#> SRR1201753 2 0.4101 0.37086 0.000 0.580 0.408 0.000 0.000 0.012
#> SRR1201758 4 0.0000 0.91531 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201759 4 0.1599 0.86781 0.000 0.000 0.024 0.940 0.008 0.028
#> SRR1201760 3 0.2719 0.62761 0.000 0.040 0.876 0.000 0.072 0.012
#> SRR1201761 3 0.5084 0.51547 0.000 0.020 0.620 0.000 0.296 0.064
#> SRR1201763 4 0.0000 0.91531 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201762 4 0.0000 0.91531 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1201764 3 0.2770 0.62647 0.000 0.064 0.880 0.004 0.016 0.036
#> SRR1201766 2 0.6176 0.27408 0.000 0.376 0.364 0.000 0.004 0.256
#> SRR1201768 2 0.5135 0.52486 0.000 0.540 0.092 0.000 0.000 0.368
#> SRR1201769 2 0.5095 0.52738 0.000 0.544 0.088 0.000 0.000 0.368
#> SRR1201767 2 0.5174 0.52445 0.000 0.536 0.096 0.000 0.000 0.368
#> SRR1201770 2 0.5095 0.52738 0.000 0.544 0.088 0.000 0.000 0.368
#> SRR1201771 2 0.5135 0.52732 0.000 0.540 0.092 0.000 0.000 0.368
#> SRR1201772 2 0.5135 0.52624 0.000 0.540 0.092 0.000 0.000 0.368
#> SRR1201773 2 0.5212 0.52122 0.000 0.532 0.100 0.000 0.000 0.368
#> SRR1201774 2 0.5135 0.52486 0.000 0.540 0.092 0.000 0.000 0.368
#> SRR1201786 2 0.5095 0.52738 0.000 0.544 0.088 0.000 0.000 0.368
#> SRR1201784 2 0.5095 0.52738 0.000 0.544 0.088 0.000 0.000 0.368
#> SRR1201785 2 0.5095 0.52738 0.000 0.544 0.088 0.000 0.000 0.368
#> SRR1201778 3 0.6040 -0.06665 0.000 0.296 0.460 0.000 0.004 0.240
#> SRR1201779 2 0.5095 0.52738 0.000 0.544 0.088 0.000 0.000 0.368
#> SRR1201781 2 0.5174 0.52526 0.000 0.536 0.096 0.000 0.000 0.368
#> SRR1201780 2 0.5135 0.52595 0.000 0.540 0.092 0.000 0.000 0.368
#> SRR1201783 2 0.5135 0.52600 0.000 0.540 0.092 0.000 0.000 0.368
#> SRR1201782 2 0.5127 0.52769 0.000 0.544 0.092 0.000 0.000 0.364
#> SRR1201798 2 0.0858 0.57086 0.000 0.968 0.004 0.000 0.000 0.028
#> SRR1201797 2 0.0858 0.57086 0.000 0.968 0.004 0.000 0.000 0.028
#> SRR1201796 2 0.0891 0.57243 0.000 0.968 0.008 0.000 0.000 0.024
#> SRR1201795 2 0.0858 0.57086 0.000 0.968 0.004 0.000 0.000 0.028
#> SRR1201799 2 0.0858 0.57086 0.000 0.968 0.004 0.000 0.000 0.028
#> SRR1201794 2 0.0858 0.57086 0.000 0.968 0.004 0.000 0.000 0.028
#> SRR1201793 2 0.0858 0.57086 0.000 0.968 0.004 0.000 0.000 0.028
#> SRR1201792 2 0.0858 0.57086 0.000 0.968 0.004 0.000 0.000 0.028
#> SRR1201791 2 0.5481 0.41245 0.000 0.520 0.340 0.000 0.000 0.140
#> SRR1201807 2 0.3290 0.46145 0.000 0.744 0.004 0.000 0.000 0.252
#> SRR1201808 2 0.3265 0.46653 0.000 0.748 0.004 0.000 0.000 0.248
#> SRR1201803 2 0.3290 0.46145 0.000 0.744 0.004 0.000 0.000 0.252
#> SRR1201804 2 0.3290 0.46145 0.000 0.744 0.004 0.000 0.000 0.252
#> SRR1201805 2 0.3290 0.46145 0.000 0.744 0.004 0.000 0.000 0.252
#> SRR1201806 2 0.3290 0.46145 0.000 0.744 0.004 0.000 0.000 0.252
#> SRR1201801 2 0.3290 0.46145 0.000 0.744 0.004 0.000 0.000 0.252
#> SRR1201802 2 0.3290 0.46145 0.000 0.744 0.004 0.000 0.000 0.252
#> SRR1201800 2 0.4885 0.41900 0.000 0.560 0.372 0.000 0.000 0.068
#> SRR1201814 2 0.0777 0.57071 0.000 0.972 0.004 0.000 0.000 0.024
#> SRR1201816 2 0.0777 0.57071 0.000 0.972 0.004 0.000 0.000 0.024
#> SRR1201815 2 0.0777 0.57071 0.000 0.972 0.004 0.000 0.000 0.024
#> SRR1201819 2 0.0777 0.57071 0.000 0.972 0.004 0.000 0.000 0.024
#> SRR1201820 2 0.0777 0.57071 0.000 0.972 0.004 0.000 0.000 0.024
#> SRR1201813 2 0.4530 0.44883 0.000 0.600 0.356 0.000 0.000 0.044
#> SRR1201817 2 0.0777 0.57071 0.000 0.972 0.004 0.000 0.000 0.024
#> SRR1201818 2 0.0777 0.57071 0.000 0.972 0.004 0.000 0.000 0.024
#> SRR1201825 3 0.5975 0.42249 0.000 0.008 0.576 0.108 0.272 0.036
#> SRR1201827 3 0.5639 0.43494 0.000 0.176 0.604 0.000 0.020 0.200
#> SRR1201828 3 0.5666 0.42817 0.000 0.180 0.600 0.000 0.020 0.200
#> SRR1201826 3 0.3352 0.56724 0.000 0.144 0.816 0.000 0.016 0.024
#> SRR1201829 3 0.5666 0.42821 0.000 0.180 0.600 0.000 0.020 0.200
#> SRR1201830 3 0.5693 0.42086 0.000 0.184 0.596 0.000 0.020 0.200
#> SRR1201831 3 0.5719 0.41284 0.000 0.188 0.592 0.000 0.020 0.200
#> SRR1201832 3 0.5639 0.43494 0.000 0.176 0.604 0.000 0.020 0.200
#> SRR1201833 3 0.5666 0.42817 0.000 0.180 0.600 0.000 0.020 0.200
#> SRR1201865 3 0.2456 0.61287 0.000 0.008 0.888 0.000 0.028 0.076
#> SRR1201866 3 0.2344 0.61658 0.000 0.008 0.896 0.000 0.028 0.068
#> SRR1201867 3 0.2456 0.61287 0.000 0.008 0.888 0.000 0.028 0.076
#> SRR1201861 3 0.2401 0.61489 0.000 0.008 0.892 0.000 0.028 0.072
#> SRR1201862 3 0.2456 0.61287 0.000 0.008 0.888 0.000 0.028 0.076
#> SRR1201863 3 0.2344 0.61650 0.000 0.008 0.896 0.000 0.028 0.068
#> SRR1201859 3 0.3238 0.62216 0.000 0.032 0.864 0.048 0.020 0.036
#> SRR1201864 3 0.2456 0.61287 0.000 0.008 0.888 0.000 0.028 0.076
#> SRR1201860 3 0.2456 0.61287 0.000 0.008 0.888 0.000 0.028 0.076
#> SRR1201873 3 0.4650 0.32520 0.000 0.008 0.548 0.000 0.416 0.028
#> SRR1201871 3 0.4749 0.39106 0.000 0.008 0.588 0.004 0.368 0.032
#> SRR1201872 3 0.4650 0.32520 0.000 0.008 0.548 0.000 0.416 0.028
#> SRR1201980 3 0.3094 0.62881 0.000 0.048 0.860 0.000 0.032 0.060
#> SRR1201979 3 0.2521 0.63224 0.000 0.032 0.892 0.000 0.020 0.056
#> SRR1201982 3 0.3182 0.62424 0.000 0.056 0.852 0.000 0.024 0.068
#> SRR1201981 3 0.2966 0.62659 0.000 0.044 0.864 0.000 0.020 0.072
#> SRR1201998 3 0.4998 0.07563 0.000 0.392 0.548 0.000 0.012 0.048
#> SRR1201996 3 0.5601 0.11770 0.000 0.324 0.528 0.000 0.004 0.144
#> SRR1201997 2 0.5550 0.23418 0.000 0.444 0.436 0.000 0.004 0.116
#> SRR1202005 2 0.3967 0.45245 0.000 0.632 0.356 0.000 0.000 0.012
#> SRR1202006 2 0.4658 0.39570 0.000 0.568 0.384 0.000 0.000 0.048
#> SRR1202088 3 0.4680 0.35083 0.000 0.008 0.564 0.000 0.396 0.032
#> SRR1202087 3 0.4615 0.35717 0.000 0.008 0.568 0.000 0.396 0.028
#> SRR1202093 3 0.3324 0.61629 0.000 0.080 0.840 0.000 0.020 0.060
#> SRR1202092 3 0.2231 0.63313 0.000 0.028 0.908 0.000 0.016 0.048
#> SRR1202288 2 0.5515 0.35711 0.000 0.492 0.372 0.000 0.000 0.136
#> SRR1202289 2 0.4282 0.50816 0.000 0.656 0.304 0.000 0.000 0.040
#> SRR1202299 2 0.4327 0.52391 0.000 0.680 0.264 0.000 0.000 0.056
#> SRR1202298 2 0.3898 0.48318 0.000 0.652 0.336 0.000 0.000 0.012
#> SRR1202303 4 0.0000 0.91531 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1202372 2 0.2593 0.58517 0.000 0.844 0.148 0.000 0.000 0.008
#> SRR1202371 3 0.5704 -0.16254 0.000 0.400 0.456 0.000 0.004 0.140
#> SRR1202563 3 0.5742 0.09192 0.000 0.292 0.524 0.000 0.004 0.180
#> SRR1202565 2 0.6066 0.35926 0.000 0.440 0.356 0.000 0.008 0.196
#> SRR1202564 2 0.6151 0.35289 0.000 0.436 0.356 0.000 0.012 0.196
#> SRR1202649 3 0.2836 0.61475 0.000 0.060 0.872 0.000 0.016 0.052
#> SRR1202650 3 0.4311 0.41734 0.000 0.228 0.708 0.000 0.004 0.060
#> SRR1202651 2 0.4101 0.50797 0.000 0.664 0.308 0.000 0.000 0.028
#> SRR1202843 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202844 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202845 3 0.6171 -0.23782 0.000 0.352 0.388 0.000 0.004 0.256
#> SRR1202847 3 0.6222 -0.27772 0.000 0.352 0.360 0.000 0.004 0.284
#> SRR1202846 3 0.6222 -0.27772 0.000 0.352 0.360 0.000 0.004 0.284
#> SRR1202945 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202949 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202977 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202978 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202979 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202990 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1202999 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203005 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203006 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203007 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203009 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203008 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203010 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203011 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203025 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203026 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203027 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203061 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203089 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203125 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203128 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203129 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203130 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203132 3 0.2955 0.62883 0.000 0.036 0.860 0.000 0.016 0.088
#> SRR1203131 3 0.1485 0.63140 0.000 0.028 0.944 0.000 0.024 0.004
#> SRR1203133 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203138 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203760 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203761 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203770 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203771 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203772 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203773 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203774 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203775 1 0.0146 0.99583 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1203800 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203801 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203802 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203803 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203804 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203805 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203806 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203807 1 0.0547 0.98006 0.980 0.000 0.000 0.020 0.000 0.000
#> SRR1203808 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203811 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203812 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203813 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203814 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203815 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203816 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203817 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203818 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203819 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203822 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203823 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203824 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203825 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203826 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203827 4 0.0000 0.91531 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1203828 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203829 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203830 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203831 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203832 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203833 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203834 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203835 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203836 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203837 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203838 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203839 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203842 4 0.0000 0.91531 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1203843 1 0.0000 0.99966 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1203845 2 0.4658 0.39361 0.000 0.568 0.384 0.000 0.000 0.048
#> SRR1203844 2 0.4889 0.47146 0.000 0.604 0.312 0.000 0.000 0.084
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["ATC", "NMF"]
# you can also extract it by
# res = res_list["ATC:NMF"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 13930 rows and 285 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'ATC' method.
#> Subgroups are detected by 'NMF' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 2.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 0.707 0.973 0.962 0.3422 0.621 0.621
#> 3 3 0.534 0.734 0.831 0.3784 0.995 0.992
#> 4 4 0.635 0.671 0.813 0.0769 0.896 0.831
#> 5 5 0.580 0.653 0.779 0.0720 0.991 0.982
#> 6 6 0.550 0.635 0.755 0.0388 0.930 0.865
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 2
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1201591 2 0.0000 0.996 0.000 1.000
#> SRR1201590 2 0.0000 0.996 0.000 1.000
#> SRR1201593 2 0.0376 0.993 0.004 0.996
#> SRR1201592 2 0.0376 0.993 0.004 0.996
#> SRR1201617 2 0.0376 0.993 0.004 0.996
#> SRR1201616 2 0.0000 0.996 0.000 1.000
#> SRR1201619 2 0.0000 0.996 0.000 1.000
#> SRR1201618 2 0.0000 0.996 0.000 1.000
#> SRR1201620 2 0.0376 0.993 0.004 0.996
#> SRR1201621 2 0.0376 0.993 0.004 0.996
#> SRR1201623 2 0.0000 0.996 0.000 1.000
#> SRR1201622 2 0.0000 0.996 0.000 1.000
#> SRR1201624 2 0.0376 0.992 0.004 0.996
#> SRR1201625 2 0.0000 0.996 0.000 1.000
#> SRR1201626 2 0.1633 0.972 0.024 0.976
#> SRR1201627 2 0.0000 0.996 0.000 1.000
#> SRR1201628 2 0.0000 0.996 0.000 1.000
#> SRR1201629 2 0.0000 0.996 0.000 1.000
#> SRR1201630 2 0.0376 0.993 0.004 0.996
#> SRR1201631 2 0.0000 0.996 0.000 1.000
#> SRR1201641 2 0.0000 0.996 0.000 1.000
#> SRR1201640 2 0.0000 0.996 0.000 1.000
#> SRR1201643 2 0.0000 0.996 0.000 1.000
#> SRR1201644 2 0.0000 0.996 0.000 1.000
#> SRR1201661 2 0.0376 0.993 0.004 0.996
#> SRR1201662 2 0.0376 0.993 0.004 0.996
#> SRR1201663 2 0.0000 0.996 0.000 1.000
#> SRR1201664 2 0.0000 0.996 0.000 1.000
#> SRR1201665 2 0.0000 0.996 0.000 1.000
#> SRR1201666 2 0.0000 0.996 0.000 1.000
#> SRR1201667 2 0.0000 0.996 0.000 1.000
#> SRR1201668 2 0.0000 0.996 0.000 1.000
#> SRR1201670 2 0.0000 0.996 0.000 1.000
#> SRR1201669 2 0.0000 0.996 0.000 1.000
#> SRR1201673 2 0.0000 0.996 0.000 1.000
#> SRR1201672 2 0.0000 0.996 0.000 1.000
#> SRR1201671 2 0.0000 0.996 0.000 1.000
#> SRR1201677 2 0.0000 0.996 0.000 1.000
#> SRR1201676 2 0.0000 0.996 0.000 1.000
#> SRR1201675 2 0.0000 0.996 0.000 1.000
#> SRR1201674 2 0.0000 0.996 0.000 1.000
#> SRR1201678 2 0.0000 0.996 0.000 1.000
#> SRR1201682 2 0.0000 0.996 0.000 1.000
#> SRR1201683 2 0.0000 0.996 0.000 1.000
#> SRR1201680 2 0.0000 0.996 0.000 1.000
#> SRR1201681 2 0.0000 0.996 0.000 1.000
#> SRR1201679 2 0.0376 0.993 0.004 0.996
#> SRR1201686 2 0.0000 0.996 0.000 1.000
#> SRR1201687 2 0.0000 0.996 0.000 1.000
#> SRR1201688 2 0.0000 0.996 0.000 1.000
#> SRR1201689 2 0.0000 0.996 0.000 1.000
#> SRR1201685 2 0.0376 0.992 0.004 0.996
#> SRR1201692 2 0.0000 0.996 0.000 1.000
#> SRR1201691 2 0.0000 0.996 0.000 1.000
#> SRR1201690 2 0.0000 0.996 0.000 1.000
#> SRR1201696 2 0.0000 0.996 0.000 1.000
#> SRR1201695 2 0.0000 0.996 0.000 1.000
#> SRR1201694 2 0.0000 0.996 0.000 1.000
#> SRR1201693 2 0.0000 0.996 0.000 1.000
#> SRR1201697 2 0.0000 0.996 0.000 1.000
#> SRR1201698 2 0.0000 0.996 0.000 1.000
#> SRR1201700 2 0.0000 0.996 0.000 1.000
#> SRR1201708 2 0.0000 0.996 0.000 1.000
#> SRR1201707 2 0.0000 0.996 0.000 1.000
#> SRR1201706 2 0.0000 0.996 0.000 1.000
#> SRR1201702 2 0.0000 0.996 0.000 1.000
#> SRR1201705 2 0.0000 0.996 0.000 1.000
#> SRR1201701 2 0.0000 0.996 0.000 1.000
#> SRR1201704 2 0.0000 0.996 0.000 1.000
#> SRR1201703 2 0.0000 0.996 0.000 1.000
#> SRR1201716 2 0.0000 0.996 0.000 1.000
#> SRR1201715 2 0.0000 0.996 0.000 1.000
#> SRR1201717 2 0.0000 0.996 0.000 1.000
#> SRR1201712 2 0.0000 0.996 0.000 1.000
#> SRR1201709 2 0.0000 0.996 0.000 1.000
#> SRR1201711 2 0.0000 0.996 0.000 1.000
#> SRR1201714 2 0.0000 0.996 0.000 1.000
#> SRR1201713 2 0.0000 0.996 0.000 1.000
#> SRR1201710 2 0.0000 0.996 0.000 1.000
#> SRR1201719 2 0.0000 0.996 0.000 1.000
#> SRR1201718 2 0.0000 0.996 0.000 1.000
#> SRR1201721 2 0.0000 0.996 0.000 1.000
#> SRR1201720 2 0.0000 0.996 0.000 1.000
#> SRR1201723 2 0.0000 0.996 0.000 1.000
#> SRR1201722 2 0.0000 0.996 0.000 1.000
#> SRR1201725 2 0.0000 0.996 0.000 1.000
#> SRR1201724 2 0.0000 0.996 0.000 1.000
#> SRR1201726 2 0.0000 0.996 0.000 1.000
#> SRR1201727 2 0.0000 0.996 0.000 1.000
#> SRR1201731 2 0.0000 0.996 0.000 1.000
#> SRR1201730 2 0.0000 0.996 0.000 1.000
#> SRR1201734 2 0.0376 0.993 0.004 0.996
#> SRR1201733 2 0.0376 0.993 0.004 0.996
#> SRR1201736 2 0.0000 0.996 0.000 1.000
#> SRR1201737 2 0.0000 0.996 0.000 1.000
#> SRR1201739 2 0.0000 0.996 0.000 1.000
#> SRR1201738 2 0.0000 0.996 0.000 1.000
#> SRR1201742 2 0.0000 0.996 0.000 1.000
#> SRR1201743 2 0.0000 0.996 0.000 1.000
#> SRR1201745 2 0.0938 0.986 0.012 0.988
#> SRR1201744 2 0.1414 0.978 0.020 0.980
#> SRR1201749 2 0.0000 0.996 0.000 1.000
#> SRR1201750 2 0.0000 0.996 0.000 1.000
#> SRR1201752 2 0.0000 0.996 0.000 1.000
#> SRR1201751 2 0.0000 0.996 0.000 1.000
#> SRR1201754 2 0.0376 0.993 0.004 0.996
#> SRR1201753 2 0.0376 0.993 0.004 0.996
#> SRR1201758 2 0.1843 0.967 0.028 0.972
#> SRR1201759 2 0.0000 0.996 0.000 1.000
#> SRR1201760 2 0.0000 0.996 0.000 1.000
#> SRR1201761 2 0.0000 0.996 0.000 1.000
#> SRR1201763 2 0.0000 0.996 0.000 1.000
#> SRR1201762 2 0.1633 0.972 0.024 0.976
#> SRR1201764 2 0.0000 0.996 0.000 1.000
#> SRR1201766 2 0.0376 0.993 0.004 0.996
#> SRR1201768 2 0.0000 0.996 0.000 1.000
#> SRR1201769 2 0.0000 0.996 0.000 1.000
#> SRR1201767 2 0.0000 0.996 0.000 1.000
#> SRR1201770 2 0.0000 0.996 0.000 1.000
#> SRR1201771 2 0.0000 0.996 0.000 1.000
#> SRR1201772 2 0.0000 0.996 0.000 1.000
#> SRR1201773 2 0.0000 0.996 0.000 1.000
#> SRR1201774 2 0.0000 0.996 0.000 1.000
#> SRR1201786 2 0.0000 0.996 0.000 1.000
#> SRR1201784 2 0.0000 0.996 0.000 1.000
#> SRR1201785 2 0.0000 0.996 0.000 1.000
#> SRR1201778 2 0.0000 0.996 0.000 1.000
#> SRR1201779 2 0.0000 0.996 0.000 1.000
#> SRR1201781 2 0.0000 0.996 0.000 1.000
#> SRR1201780 2 0.0000 0.996 0.000 1.000
#> SRR1201783 2 0.0000 0.996 0.000 1.000
#> SRR1201782 2 0.0000 0.996 0.000 1.000
#> SRR1201798 2 0.0376 0.993 0.004 0.996
#> SRR1201797 2 0.0376 0.993 0.004 0.996
#> SRR1201796 2 0.0376 0.993 0.004 0.996
#> SRR1201795 2 0.0376 0.993 0.004 0.996
#> SRR1201799 2 0.0376 0.993 0.004 0.996
#> SRR1201794 2 0.0376 0.993 0.004 0.996
#> SRR1201793 2 0.0376 0.993 0.004 0.996
#> SRR1201792 2 0.0376 0.993 0.004 0.996
#> SRR1201791 2 0.0000 0.996 0.000 1.000
#> SRR1201807 2 0.0376 0.993 0.004 0.996
#> SRR1201808 2 0.0376 0.993 0.004 0.996
#> SRR1201803 2 0.0376 0.993 0.004 0.996
#> SRR1201804 2 0.0376 0.993 0.004 0.996
#> SRR1201805 2 0.0376 0.993 0.004 0.996
#> SRR1201806 2 0.0376 0.993 0.004 0.996
#> SRR1201801 2 0.0376 0.993 0.004 0.996
#> SRR1201802 2 0.0376 0.993 0.004 0.996
#> SRR1201800 2 0.0376 0.993 0.004 0.996
#> SRR1201814 2 0.0376 0.993 0.004 0.996
#> SRR1201816 2 0.0376 0.993 0.004 0.996
#> SRR1201815 2 0.0376 0.993 0.004 0.996
#> SRR1201819 2 0.0376 0.993 0.004 0.996
#> SRR1201820 2 0.0376 0.993 0.004 0.996
#> SRR1201813 2 0.0376 0.993 0.004 0.996
#> SRR1201817 2 0.0376 0.993 0.004 0.996
#> SRR1201818 2 0.0376 0.993 0.004 0.996
#> SRR1201825 2 0.0000 0.996 0.000 1.000
#> SRR1201827 2 0.0000 0.996 0.000 1.000
#> SRR1201828 2 0.0000 0.996 0.000 1.000
#> SRR1201826 2 0.0376 0.993 0.004 0.996
#> SRR1201829 2 0.0000 0.996 0.000 1.000
#> SRR1201830 2 0.0000 0.996 0.000 1.000
#> SRR1201831 2 0.0000 0.996 0.000 1.000
#> SRR1201832 2 0.0000 0.996 0.000 1.000
#> SRR1201833 2 0.0000 0.996 0.000 1.000
#> SRR1201865 2 0.0000 0.996 0.000 1.000
#> SRR1201866 2 0.0000 0.996 0.000 1.000
#> SRR1201867 2 0.0000 0.996 0.000 1.000
#> SRR1201861 2 0.0000 0.996 0.000 1.000
#> SRR1201862 2 0.0000 0.996 0.000 1.000
#> SRR1201863 2 0.0000 0.996 0.000 1.000
#> SRR1201859 2 0.0376 0.993 0.004 0.996
#> SRR1201864 2 0.0000 0.996 0.000 1.000
#> SRR1201860 2 0.0000 0.996 0.000 1.000
#> SRR1201873 2 0.0000 0.996 0.000 1.000
#> SRR1201871 2 0.0000 0.996 0.000 1.000
#> SRR1201872 2 0.0000 0.996 0.000 1.000
#> SRR1201980 2 0.0000 0.996 0.000 1.000
#> SRR1201979 2 0.0000 0.996 0.000 1.000
#> SRR1201982 2 0.0000 0.996 0.000 1.000
#> SRR1201981 2 0.0000 0.996 0.000 1.000
#> SRR1201998 2 0.0000 0.996 0.000 1.000
#> SRR1201996 2 0.0000 0.996 0.000 1.000
#> SRR1201997 2 0.0000 0.996 0.000 1.000
#> SRR1202005 2 0.0376 0.993 0.004 0.996
#> SRR1202006 2 0.0376 0.993 0.004 0.996
#> SRR1202088 2 0.0000 0.996 0.000 1.000
#> SRR1202087 2 0.0000 0.996 0.000 1.000
#> SRR1202093 2 0.0000 0.996 0.000 1.000
#> SRR1202092 2 0.0000 0.996 0.000 1.000
#> SRR1202288 2 0.0000 0.996 0.000 1.000
#> SRR1202289 2 0.0376 0.993 0.004 0.996
#> SRR1202299 2 0.0376 0.993 0.004 0.996
#> SRR1202298 2 0.0376 0.993 0.004 0.996
#> SRR1202303 2 0.0000 0.996 0.000 1.000
#> SRR1202372 2 0.0376 0.993 0.004 0.996
#> SRR1202371 2 0.0376 0.993 0.004 0.996
#> SRR1202563 2 0.0000 0.996 0.000 1.000
#> SRR1202565 2 0.0000 0.996 0.000 1.000
#> SRR1202564 2 0.0376 0.993 0.004 0.996
#> SRR1202649 2 0.0376 0.993 0.004 0.996
#> SRR1202650 2 0.0000 0.996 0.000 1.000
#> SRR1202651 2 0.0376 0.993 0.004 0.996
#> SRR1202843 1 0.8016 0.853 0.756 0.244
#> SRR1202844 1 0.6801 0.917 0.820 0.180
#> SRR1202845 2 0.0000 0.996 0.000 1.000
#> SRR1202847 2 0.0376 0.993 0.004 0.996
#> SRR1202846 2 0.0000 0.996 0.000 1.000
#> SRR1202945 1 0.8016 0.853 0.756 0.244
#> SRR1202949 1 0.6801 0.920 0.820 0.180
#> SRR1202977 1 0.4161 0.934 0.916 0.084
#> SRR1202978 1 0.4815 0.943 0.896 0.104
#> SRR1202979 1 0.4815 0.943 0.896 0.104
#> SRR1202990 1 0.5294 0.946 0.880 0.120
#> SRR1202999 1 0.5629 0.946 0.868 0.132
#> SRR1203005 1 0.5178 0.946 0.884 0.116
#> SRR1203006 1 0.6247 0.941 0.844 0.156
#> SRR1203007 1 0.5408 0.946 0.876 0.124
#> SRR1203009 1 0.9460 0.614 0.636 0.364
#> SRR1203008 2 0.9963 -0.114 0.464 0.536
#> SRR1203010 1 0.6973 0.918 0.812 0.188
#> SRR1203011 1 0.4431 0.939 0.908 0.092
#> SRR1203025 1 0.5737 0.946 0.864 0.136
#> SRR1203026 1 0.5519 0.946 0.872 0.128
#> SRR1203027 1 0.5059 0.945 0.888 0.112
#> SRR1203061 1 0.4562 0.940 0.904 0.096
#> SRR1203089 1 0.5178 0.945 0.884 0.116
#> SRR1203125 1 0.5842 0.945 0.860 0.140
#> SRR1203128 1 0.6623 0.929 0.828 0.172
#> SRR1203129 1 0.7602 0.885 0.780 0.220
#> SRR1203130 1 0.7376 0.894 0.792 0.208
#> SRR1203132 2 0.0000 0.996 0.000 1.000
#> SRR1203131 2 0.0000 0.996 0.000 1.000
#> SRR1203133 1 0.4298 0.936 0.912 0.088
#> SRR1203138 1 0.7056 0.915 0.808 0.192
#> SRR1203760 1 0.5842 0.945 0.860 0.140
#> SRR1203761 1 0.5059 0.945 0.888 0.112
#> SRR1203770 1 0.5629 0.946 0.868 0.132
#> SRR1203771 1 0.5946 0.943 0.856 0.144
#> SRR1203772 1 0.6887 0.920 0.816 0.184
#> SRR1203773 1 0.6048 0.943 0.852 0.148
#> SRR1203774 1 0.3584 0.922 0.932 0.068
#> SRR1203775 1 0.5408 0.946 0.876 0.124
#> SRR1203800 1 0.4562 0.940 0.904 0.096
#> SRR1203801 1 0.6048 0.942 0.852 0.148
#> SRR1203802 1 0.6887 0.922 0.816 0.184
#> SRR1203803 1 0.6973 0.919 0.812 0.188
#> SRR1203804 1 0.4431 0.937 0.908 0.092
#> SRR1203805 1 0.4431 0.938 0.908 0.092
#> SRR1203806 1 0.5178 0.945 0.884 0.116
#> SRR1203807 1 0.3274 0.917 0.940 0.060
#> SRR1203808 1 0.4815 0.944 0.896 0.104
#> SRR1203811 1 0.5294 0.946 0.880 0.120
#> SRR1203812 1 0.6438 0.932 0.836 0.164
#> SRR1203813 1 0.4690 0.941 0.900 0.100
#> SRR1203814 1 0.5519 0.946 0.872 0.128
#> SRR1203815 1 0.6247 0.941 0.844 0.156
#> SRR1203816 1 0.4161 0.933 0.916 0.084
#> SRR1203817 1 0.6623 0.929 0.828 0.172
#> SRR1203818 1 0.6887 0.922 0.816 0.184
#> SRR1203819 1 0.6623 0.931 0.828 0.172
#> SRR1203822 1 0.8267 0.823 0.740 0.260
#> SRR1203823 1 0.4939 0.944 0.892 0.108
#> SRR1203824 1 0.4022 0.930 0.920 0.080
#> SRR1203825 1 0.6438 0.934 0.836 0.164
#> SRR1203826 1 0.6973 0.915 0.812 0.188
#> SRR1203827 1 0.4161 0.933 0.916 0.084
#> SRR1203828 1 0.4298 0.937 0.912 0.088
#> SRR1203829 1 0.6438 0.935 0.836 0.164
#> SRR1203830 1 0.5519 0.946 0.872 0.128
#> SRR1203831 1 0.4431 0.938 0.908 0.092
#> SRR1203832 1 0.6343 0.937 0.840 0.160
#> SRR1203833 1 0.4022 0.932 0.920 0.080
#> SRR1203834 1 0.6048 0.943 0.852 0.148
#> SRR1203835 1 0.5842 0.945 0.860 0.140
#> SRR1203836 1 0.3733 0.927 0.928 0.072
#> SRR1203837 1 0.3274 0.918 0.940 0.060
#> SRR1203838 1 0.6148 0.942 0.848 0.152
#> SRR1203839 1 0.6148 0.942 0.848 0.152
#> SRR1203842 1 0.2603 0.905 0.956 0.044
#> SRR1203843 1 0.3879 0.928 0.924 0.076
#> SRR1203845 2 0.0672 0.990 0.008 0.992
#> SRR1203844 2 0.0376 0.993 0.004 0.996
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1201591 2 0.3340 0.7812 0.000 0.880 0.120
#> SRR1201590 2 0.2625 0.7948 0.000 0.916 0.084
#> SRR1201593 2 0.3941 0.7520 0.000 0.844 0.156
#> SRR1201592 2 0.3752 0.7641 0.000 0.856 0.144
#> SRR1201617 2 0.3816 0.7603 0.000 0.852 0.148
#> SRR1201616 2 0.3752 0.7638 0.000 0.856 0.144
#> SRR1201619 2 0.1031 0.7980 0.000 0.976 0.024
#> SRR1201618 2 0.0592 0.7954 0.000 0.988 0.012
#> SRR1201620 2 0.4002 0.7476 0.000 0.840 0.160
#> SRR1201621 2 0.3941 0.7524 0.000 0.844 0.156
#> SRR1201623 2 0.3752 0.7036 0.000 0.856 0.144
#> SRR1201622 2 0.4452 0.6449 0.000 0.808 0.192
#> SRR1201624 2 0.6045 0.1745 0.000 0.620 0.380
#> SRR1201625 2 0.5810 0.3315 0.000 0.664 0.336
#> SRR1201626 2 0.6495 -0.1974 0.004 0.536 0.460
#> SRR1201627 2 0.5835 0.3267 0.000 0.660 0.340
#> SRR1201628 2 0.3038 0.7434 0.000 0.896 0.104
#> SRR1201629 2 0.1643 0.7840 0.000 0.956 0.044
#> SRR1201630 2 0.2625 0.7944 0.000 0.916 0.084
#> SRR1201631 2 0.2711 0.7936 0.000 0.912 0.088
#> SRR1201641 2 0.2356 0.7964 0.000 0.928 0.072
#> SRR1201640 2 0.2066 0.7979 0.000 0.940 0.060
#> SRR1201643 2 0.0747 0.7925 0.000 0.984 0.016
#> SRR1201644 2 0.0237 0.7951 0.000 0.996 0.004
#> SRR1201661 2 0.2959 0.7904 0.000 0.900 0.100
#> SRR1201662 2 0.3551 0.7739 0.000 0.868 0.132
#> SRR1201663 2 0.5465 0.4646 0.000 0.712 0.288
#> SRR1201664 2 0.5397 0.4826 0.000 0.720 0.280
#> SRR1201665 2 0.1529 0.7992 0.000 0.960 0.040
#> SRR1201666 2 0.2711 0.7936 0.000 0.912 0.088
#> SRR1201667 2 0.2711 0.7936 0.000 0.912 0.088
#> SRR1201668 2 0.5560 0.4347 0.000 0.700 0.300
#> SRR1201670 2 0.5465 0.4645 0.000 0.712 0.288
#> SRR1201669 2 0.5465 0.4645 0.000 0.712 0.288
#> SRR1201673 2 0.1753 0.7824 0.000 0.952 0.048
#> SRR1201672 2 0.1753 0.7824 0.000 0.952 0.048
#> SRR1201671 2 0.2711 0.7566 0.000 0.912 0.088
#> SRR1201677 2 0.1860 0.7801 0.000 0.948 0.052
#> SRR1201676 2 0.1964 0.7780 0.000 0.944 0.056
#> SRR1201675 2 0.1860 0.7801 0.000 0.948 0.052
#> SRR1201674 2 0.1753 0.7824 0.000 0.952 0.048
#> SRR1201678 2 0.1753 0.7824 0.000 0.952 0.048
#> SRR1201682 2 0.2711 0.7936 0.000 0.912 0.088
#> SRR1201683 2 0.2711 0.7936 0.000 0.912 0.088
#> SRR1201680 2 0.2625 0.7946 0.000 0.916 0.084
#> SRR1201681 2 0.2625 0.7946 0.000 0.916 0.084
#> SRR1201679 2 0.3038 0.7889 0.000 0.896 0.104
#> SRR1201686 2 0.5465 0.4646 0.000 0.712 0.288
#> SRR1201687 2 0.5465 0.4646 0.000 0.712 0.288
#> SRR1201688 2 0.5465 0.4646 0.000 0.712 0.288
#> SRR1201689 2 0.5465 0.4646 0.000 0.712 0.288
#> SRR1201685 2 0.5650 0.4021 0.000 0.688 0.312
#> SRR1201692 2 0.1643 0.7839 0.000 0.956 0.044
#> SRR1201691 2 0.1753 0.7824 0.000 0.952 0.048
#> SRR1201690 2 0.2711 0.7566 0.000 0.912 0.088
#> SRR1201696 2 0.1753 0.7821 0.000 0.952 0.048
#> SRR1201695 2 0.1753 0.7824 0.000 0.952 0.048
#> SRR1201694 2 0.1753 0.7824 0.000 0.952 0.048
#> SRR1201693 2 0.1643 0.7839 0.000 0.956 0.044
#> SRR1201697 2 0.1753 0.7824 0.000 0.952 0.048
#> SRR1201698 2 0.1411 0.7870 0.000 0.964 0.036
#> SRR1201700 2 0.4121 0.6764 0.000 0.832 0.168
#> SRR1201708 2 0.4121 0.6764 0.000 0.832 0.168
#> SRR1201707 2 0.4121 0.6764 0.000 0.832 0.168
#> SRR1201706 2 0.4121 0.6764 0.000 0.832 0.168
#> SRR1201702 2 0.4062 0.6813 0.000 0.836 0.164
#> SRR1201705 2 0.4062 0.6813 0.000 0.836 0.164
#> SRR1201701 2 0.4121 0.6764 0.000 0.832 0.168
#> SRR1201704 2 0.4121 0.6764 0.000 0.832 0.168
#> SRR1201703 2 0.4121 0.6764 0.000 0.832 0.168
#> SRR1201716 2 0.4605 0.6269 0.000 0.796 0.204
#> SRR1201715 2 0.4702 0.6144 0.000 0.788 0.212
#> SRR1201717 2 0.4654 0.6208 0.000 0.792 0.208
#> SRR1201712 2 0.4750 0.6078 0.000 0.784 0.216
#> SRR1201709 2 0.4796 0.6011 0.000 0.780 0.220
#> SRR1201711 2 0.4702 0.6144 0.000 0.788 0.212
#> SRR1201714 2 0.4654 0.6208 0.000 0.792 0.208
#> SRR1201713 2 0.4654 0.6208 0.000 0.792 0.208
#> SRR1201710 2 0.4654 0.6208 0.000 0.792 0.208
#> SRR1201719 2 0.3192 0.7862 0.000 0.888 0.112
#> SRR1201718 2 0.2625 0.7946 0.000 0.916 0.084
#> SRR1201721 2 0.2878 0.7501 0.000 0.904 0.096
#> SRR1201720 2 0.3752 0.7040 0.000 0.856 0.144
#> SRR1201723 2 0.5497 0.4550 0.000 0.708 0.292
#> SRR1201722 2 0.5560 0.4347 0.000 0.700 0.300
#> SRR1201725 2 0.2711 0.7936 0.000 0.912 0.088
#> SRR1201724 2 0.2796 0.7927 0.000 0.908 0.092
#> SRR1201726 2 0.4974 0.5728 0.000 0.764 0.236
#> SRR1201727 2 0.4291 0.6611 0.000 0.820 0.180
#> SRR1201731 2 0.1860 0.7805 0.000 0.948 0.052
#> SRR1201730 2 0.2261 0.7709 0.000 0.932 0.068
#> SRR1201734 2 0.3116 0.7879 0.000 0.892 0.108
#> SRR1201733 2 0.3116 0.7877 0.000 0.892 0.108
#> SRR1201736 2 0.0892 0.7942 0.000 0.980 0.020
#> SRR1201737 2 0.0000 0.7958 0.000 1.000 0.000
#> SRR1201739 2 0.2625 0.7946 0.000 0.916 0.084
#> SRR1201738 2 0.2165 0.7973 0.000 0.936 0.064
#> SRR1201742 2 0.1289 0.7880 0.000 0.968 0.032
#> SRR1201743 2 0.0747 0.7925 0.000 0.984 0.016
#> SRR1201745 2 0.4233 0.7433 0.004 0.836 0.160
#> SRR1201744 2 0.4409 0.7275 0.004 0.824 0.172
#> SRR1201749 2 0.3116 0.7879 0.000 0.892 0.108
#> SRR1201750 2 0.2878 0.7916 0.000 0.904 0.096
#> SRR1201752 2 0.2066 0.7759 0.000 0.940 0.060
#> SRR1201751 2 0.2356 0.7682 0.000 0.928 0.072
#> SRR1201754 2 0.3816 0.7603 0.000 0.852 0.148
#> SRR1201753 2 0.3879 0.7562 0.000 0.848 0.152
#> SRR1201758 2 0.6330 0.0894 0.004 0.600 0.396
#> SRR1201759 2 0.5948 0.2508 0.000 0.640 0.360
#> SRR1201760 2 0.3267 0.7321 0.000 0.884 0.116
#> SRR1201761 2 0.3482 0.7206 0.000 0.872 0.128
#> SRR1201763 2 0.5650 0.4003 0.000 0.688 0.312
#> SRR1201762 2 0.6432 -0.0647 0.004 0.568 0.428
#> SRR1201764 2 0.2625 0.7666 0.000 0.916 0.084
#> SRR1201766 2 0.3038 0.7890 0.000 0.896 0.104
#> SRR1201768 2 0.3038 0.7890 0.000 0.896 0.104
#> SRR1201769 2 0.3038 0.7890 0.000 0.896 0.104
#> SRR1201767 2 0.3038 0.7890 0.000 0.896 0.104
#> SRR1201770 2 0.3038 0.7890 0.000 0.896 0.104
#> SRR1201771 2 0.3038 0.7890 0.000 0.896 0.104
#> SRR1201772 2 0.3038 0.7890 0.000 0.896 0.104
#> SRR1201773 2 0.3038 0.7890 0.000 0.896 0.104
#> SRR1201774 2 0.3038 0.7890 0.000 0.896 0.104
#> SRR1201786 2 0.3116 0.7872 0.000 0.892 0.108
#> SRR1201784 2 0.3116 0.7872 0.000 0.892 0.108
#> SRR1201785 2 0.3192 0.7849 0.000 0.888 0.112
#> SRR1201778 2 0.3340 0.7806 0.000 0.880 0.120
#> SRR1201779 2 0.3116 0.7872 0.000 0.892 0.108
#> SRR1201781 2 0.3116 0.7872 0.000 0.892 0.108
#> SRR1201780 2 0.3116 0.7872 0.000 0.892 0.108
#> SRR1201783 2 0.3267 0.7829 0.000 0.884 0.116
#> SRR1201782 2 0.3267 0.7829 0.000 0.884 0.116
#> SRR1201798 2 0.3619 0.7701 0.000 0.864 0.136
#> SRR1201797 2 0.3551 0.7730 0.000 0.868 0.132
#> SRR1201796 2 0.3551 0.7730 0.000 0.868 0.132
#> SRR1201795 2 0.3619 0.7701 0.000 0.864 0.136
#> SRR1201799 2 0.3619 0.7701 0.000 0.864 0.136
#> SRR1201794 2 0.3619 0.7701 0.000 0.864 0.136
#> SRR1201793 2 0.3551 0.7730 0.000 0.868 0.132
#> SRR1201792 2 0.3482 0.7756 0.000 0.872 0.128
#> SRR1201791 2 0.3340 0.7807 0.000 0.880 0.120
#> SRR1201807 2 0.4062 0.7430 0.000 0.836 0.164
#> SRR1201808 2 0.4062 0.7430 0.000 0.836 0.164
#> SRR1201803 2 0.4062 0.7430 0.000 0.836 0.164
#> SRR1201804 2 0.4062 0.7430 0.000 0.836 0.164
#> SRR1201805 2 0.4062 0.7430 0.000 0.836 0.164
#> SRR1201806 2 0.4062 0.7430 0.000 0.836 0.164
#> SRR1201801 2 0.4062 0.7430 0.000 0.836 0.164
#> SRR1201802 2 0.4062 0.7430 0.000 0.836 0.164
#> SRR1201800 2 0.3941 0.7520 0.000 0.844 0.156
#> SRR1201814 2 0.3752 0.7640 0.000 0.856 0.144
#> SRR1201816 2 0.3752 0.7640 0.000 0.856 0.144
#> SRR1201815 2 0.3752 0.7640 0.000 0.856 0.144
#> SRR1201819 2 0.3752 0.7640 0.000 0.856 0.144
#> SRR1201820 2 0.3752 0.7640 0.000 0.856 0.144
#> SRR1201813 2 0.3752 0.7640 0.000 0.856 0.144
#> SRR1201817 2 0.3752 0.7640 0.000 0.856 0.144
#> SRR1201818 2 0.3752 0.7640 0.000 0.856 0.144
#> SRR1201825 2 0.4654 0.6218 0.000 0.792 0.208
#> SRR1201827 2 0.0000 0.7958 0.000 1.000 0.000
#> SRR1201828 2 0.0000 0.7958 0.000 1.000 0.000
#> SRR1201826 2 0.0424 0.7943 0.000 0.992 0.008
#> SRR1201829 2 0.0000 0.7958 0.000 1.000 0.000
#> SRR1201830 2 0.0237 0.7963 0.000 0.996 0.004
#> SRR1201831 2 0.0000 0.7958 0.000 1.000 0.000
#> SRR1201832 2 0.0000 0.7958 0.000 1.000 0.000
#> SRR1201833 2 0.0000 0.7958 0.000 1.000 0.000
#> SRR1201865 2 0.1529 0.7856 0.000 0.960 0.040
#> SRR1201866 2 0.1529 0.7856 0.000 0.960 0.040
#> SRR1201867 2 0.1529 0.7856 0.000 0.960 0.040
#> SRR1201861 2 0.1529 0.7856 0.000 0.960 0.040
#> SRR1201862 2 0.1529 0.7856 0.000 0.960 0.040
#> SRR1201863 2 0.1529 0.7856 0.000 0.960 0.040
#> SRR1201859 2 0.2261 0.7725 0.000 0.932 0.068
#> SRR1201864 2 0.1529 0.7856 0.000 0.960 0.040
#> SRR1201860 2 0.1529 0.7856 0.000 0.960 0.040
#> SRR1201873 2 0.4121 0.6763 0.000 0.832 0.168
#> SRR1201871 2 0.4452 0.6446 0.000 0.808 0.192
#> SRR1201872 2 0.3879 0.6947 0.000 0.848 0.152
#> SRR1201980 2 0.2066 0.7759 0.000 0.940 0.060
#> SRR1201979 2 0.2796 0.7538 0.000 0.908 0.092
#> SRR1201982 2 0.1643 0.7877 0.000 0.956 0.044
#> SRR1201981 2 0.1964 0.7781 0.000 0.944 0.056
#> SRR1201998 2 0.1411 0.7985 0.000 0.964 0.036
#> SRR1201996 2 0.0892 0.7978 0.000 0.980 0.020
#> SRR1201997 2 0.2448 0.7959 0.000 0.924 0.076
#> SRR1202005 2 0.3686 0.7672 0.000 0.860 0.140
#> SRR1202006 2 0.3879 0.7566 0.000 0.848 0.152
#> SRR1202088 2 0.4178 0.6714 0.000 0.828 0.172
#> SRR1202087 2 0.4887 0.5873 0.000 0.772 0.228
#> SRR1202093 2 0.0747 0.7925 0.000 0.984 0.016
#> SRR1202092 2 0.1860 0.7801 0.000 0.948 0.052
#> SRR1202288 2 0.3551 0.7733 0.000 0.868 0.132
#> SRR1202289 2 0.3816 0.7603 0.000 0.852 0.148
#> SRR1202299 2 0.3941 0.7520 0.000 0.844 0.156
#> SRR1202298 2 0.3816 0.7601 0.000 0.852 0.148
#> SRR1202303 2 0.5497 0.4642 0.000 0.708 0.292
#> SRR1202372 2 0.3686 0.7672 0.000 0.860 0.140
#> SRR1202371 2 0.3983 0.7610 0.004 0.852 0.144
#> SRR1202563 2 0.2959 0.7910 0.000 0.900 0.100
#> SRR1202565 2 0.2537 0.7953 0.000 0.920 0.080
#> SRR1202564 2 0.2625 0.7946 0.000 0.916 0.084
#> SRR1202649 2 0.0892 0.7961 0.000 0.980 0.020
#> SRR1202650 2 0.1163 0.7982 0.000 0.972 0.028
#> SRR1202651 2 0.3686 0.7672 0.000 0.860 0.140
#> SRR1202843 1 0.8213 0.6610 0.632 0.140 0.228
#> SRR1202844 1 0.7058 0.7916 0.720 0.100 0.180
#> SRR1202845 2 0.3267 0.7842 0.000 0.884 0.116
#> SRR1202847 2 0.3551 0.7734 0.000 0.868 0.132
#> SRR1202846 2 0.3551 0.7734 0.000 0.868 0.132
#> SRR1202945 1 0.8067 0.5935 0.652 0.160 0.188
#> SRR1202949 1 0.7180 0.8088 0.700 0.084 0.216
#> SRR1202977 1 0.5719 0.8493 0.792 0.052 0.156
#> SRR1202978 1 0.6007 0.8473 0.768 0.048 0.184
#> SRR1202979 1 0.5756 0.8277 0.764 0.028 0.208
#> SRR1202990 1 0.6685 0.8245 0.708 0.048 0.244
#> SRR1202999 1 0.5407 0.8407 0.804 0.040 0.156
#> SRR1203005 1 0.6158 0.8486 0.760 0.052 0.188
#> SRR1203006 1 0.6875 0.8302 0.724 0.080 0.196
#> SRR1203007 1 0.5696 0.8505 0.800 0.064 0.136
#> SRR1203009 1 0.9529 -0.1532 0.448 0.196 0.356
#> SRR1203008 3 0.9967 0.0000 0.304 0.324 0.372
#> SRR1203010 1 0.7642 0.7694 0.660 0.092 0.248
#> SRR1203011 1 0.5631 0.8477 0.792 0.044 0.164
#> SRR1203025 1 0.5407 0.8435 0.804 0.040 0.156
#> SRR1203026 1 0.5581 0.8436 0.792 0.040 0.168
#> SRR1203027 1 0.5688 0.8444 0.788 0.044 0.168
#> SRR1203061 1 0.5850 0.8462 0.772 0.040 0.188
#> SRR1203089 1 0.6491 0.8408 0.732 0.052 0.216
#> SRR1203125 1 0.6388 0.8448 0.752 0.064 0.184
#> SRR1203128 1 0.7165 0.7762 0.716 0.112 0.172
#> SRR1203129 1 0.7830 0.7083 0.668 0.136 0.196
#> SRR1203130 1 0.7391 0.7720 0.696 0.108 0.196
#> SRR1203132 2 0.2066 0.7759 0.000 0.940 0.060
#> SRR1203131 2 0.2796 0.7534 0.000 0.908 0.092
#> SRR1203133 1 0.5036 0.8451 0.832 0.048 0.120
#> SRR1203138 1 0.7412 0.7403 0.700 0.124 0.176
#> SRR1203760 1 0.6632 0.8392 0.732 0.064 0.204
#> SRR1203761 1 0.6239 0.8426 0.768 0.072 0.160
#> SRR1203770 1 0.7263 0.8247 0.692 0.084 0.224
#> SRR1203771 1 0.7437 0.7866 0.692 0.108 0.200
#> SRR1203772 1 0.7180 0.8131 0.708 0.096 0.196
#> SRR1203773 1 0.6159 0.8483 0.756 0.048 0.196
#> SRR1203774 1 0.5285 0.8437 0.812 0.040 0.148
#> SRR1203775 1 0.6537 0.8420 0.740 0.064 0.196
#> SRR1203800 1 0.4931 0.8327 0.828 0.032 0.140
#> SRR1203801 1 0.6646 0.8266 0.740 0.076 0.184
#> SRR1203802 1 0.6895 0.8412 0.716 0.072 0.212
#> SRR1203803 1 0.7157 0.8085 0.712 0.100 0.188
#> SRR1203804 1 0.5236 0.8337 0.804 0.028 0.168
#> SRR1203805 1 0.5467 0.8378 0.792 0.032 0.176
#> SRR1203806 1 0.6201 0.8435 0.748 0.044 0.208
#> SRR1203807 1 0.5940 0.8357 0.760 0.036 0.204
#> SRR1203808 1 0.5792 0.8416 0.772 0.036 0.192
#> SRR1203811 1 0.6203 0.8491 0.760 0.056 0.184
#> SRR1203812 1 0.7016 0.7708 0.728 0.116 0.156
#> SRR1203813 1 0.5435 0.8486 0.808 0.048 0.144
#> SRR1203814 1 0.6264 0.8403 0.724 0.032 0.244
#> SRR1203815 1 0.6804 0.8401 0.724 0.072 0.204
#> SRR1203816 1 0.5235 0.8418 0.812 0.036 0.152
#> SRR1203817 1 0.6954 0.8296 0.720 0.084 0.196
#> SRR1203818 1 0.7058 0.8025 0.720 0.100 0.180
#> SRR1203819 1 0.6291 0.8326 0.768 0.080 0.152
#> SRR1203822 1 0.9147 0.2395 0.540 0.200 0.260
#> SRR1203823 1 0.5688 0.8479 0.788 0.044 0.168
#> SRR1203824 1 0.4539 0.8179 0.836 0.016 0.148
#> SRR1203825 1 0.7169 0.8117 0.704 0.088 0.208
#> SRR1203826 1 0.7059 0.8081 0.716 0.092 0.192
#> SRR1203827 1 0.6422 0.7159 0.660 0.016 0.324
#> SRR1203828 1 0.5803 0.8343 0.760 0.028 0.212
#> SRR1203829 1 0.7413 0.7897 0.692 0.104 0.204
#> SRR1203830 1 0.6875 0.8291 0.700 0.056 0.244
#> SRR1203831 1 0.4602 0.8215 0.832 0.016 0.152
#> SRR1203832 1 0.7330 0.7983 0.692 0.092 0.216
#> SRR1203833 1 0.6067 0.8317 0.736 0.028 0.236
#> SRR1203834 1 0.7031 0.8174 0.716 0.088 0.196
#> SRR1203835 1 0.7085 0.8049 0.716 0.096 0.188
#> SRR1203836 1 0.6719 0.8439 0.728 0.068 0.204
#> SRR1203837 1 0.5467 0.8346 0.792 0.032 0.176
#> SRR1203838 1 0.6447 0.8450 0.744 0.060 0.196
#> SRR1203839 1 0.6463 0.8394 0.756 0.080 0.164
#> SRR1203842 1 0.7013 0.6798 0.640 0.036 0.324
#> SRR1203843 1 0.5633 0.8313 0.768 0.024 0.208
#> SRR1203845 2 0.4002 0.7486 0.000 0.840 0.160
#> SRR1203844 2 0.3879 0.7565 0.000 0.848 0.152
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1201591 2 0.1059 0.8344 0.000 0.972 0.012 0.016
#> SRR1201590 2 0.0524 0.8414 0.000 0.988 0.008 0.004
#> SRR1201593 2 0.1929 0.8089 0.000 0.940 0.024 0.036
#> SRR1201592 2 0.1520 0.8238 0.000 0.956 0.024 0.020
#> SRR1201617 2 0.1624 0.8203 0.000 0.952 0.020 0.028
#> SRR1201616 2 0.1297 0.8298 0.000 0.964 0.020 0.016
#> SRR1201619 2 0.1109 0.8355 0.000 0.968 0.028 0.004
#> SRR1201618 2 0.1305 0.8369 0.000 0.960 0.036 0.004
#> SRR1201620 2 0.1833 0.8133 0.000 0.944 0.024 0.032
#> SRR1201621 2 0.2021 0.8043 0.000 0.936 0.024 0.040
#> SRR1201623 2 0.4018 0.5262 0.000 0.772 0.224 0.004
#> SRR1201622 2 0.5331 -0.0453 0.000 0.644 0.332 0.024
#> SRR1201624 3 0.5184 0.7370 0.000 0.304 0.672 0.024
#> SRR1201625 3 0.5400 0.8266 0.000 0.372 0.608 0.020
#> SRR1201626 3 0.6709 0.1989 0.020 0.180 0.664 0.136
#> SRR1201627 3 0.6677 0.7898 0.000 0.364 0.540 0.096
#> SRR1201628 2 0.3355 0.6837 0.000 0.836 0.160 0.004
#> SRR1201629 2 0.2266 0.8000 0.000 0.912 0.084 0.004
#> SRR1201630 2 0.0188 0.8412 0.000 0.996 0.000 0.004
#> SRR1201631 2 0.0188 0.8412 0.000 0.996 0.004 0.000
#> SRR1201641 2 0.0524 0.8402 0.000 0.988 0.008 0.004
#> SRR1201640 2 0.0657 0.8397 0.000 0.984 0.012 0.004
#> SRR1201643 2 0.1743 0.8215 0.000 0.940 0.056 0.004
#> SRR1201644 2 0.1489 0.8281 0.000 0.952 0.044 0.004
#> SRR1201661 2 0.1174 0.8372 0.000 0.968 0.020 0.012
#> SRR1201662 2 0.1059 0.8380 0.000 0.972 0.016 0.012
#> SRR1201663 3 0.5281 0.7928 0.000 0.464 0.528 0.008
#> SRR1201664 3 0.5290 0.7617 0.000 0.476 0.516 0.008
#> SRR1201665 2 0.1118 0.8378 0.000 0.964 0.036 0.000
#> SRR1201666 2 0.0524 0.8416 0.000 0.988 0.008 0.004
#> SRR1201667 2 0.0524 0.8416 0.000 0.988 0.008 0.004
#> SRR1201668 3 0.5320 0.8359 0.000 0.416 0.572 0.012
#> SRR1201670 3 0.5143 0.8109 0.000 0.456 0.540 0.004
#> SRR1201669 3 0.5143 0.8109 0.000 0.456 0.540 0.004
#> SRR1201673 2 0.2125 0.8071 0.000 0.920 0.076 0.004
#> SRR1201672 2 0.2125 0.8071 0.000 0.920 0.076 0.004
#> SRR1201671 2 0.2944 0.7407 0.000 0.868 0.128 0.004
#> SRR1201677 2 0.2125 0.8071 0.000 0.920 0.076 0.004
#> SRR1201676 2 0.2197 0.8034 0.000 0.916 0.080 0.004
#> SRR1201675 2 0.2125 0.8071 0.000 0.920 0.076 0.004
#> SRR1201674 2 0.2125 0.8071 0.000 0.920 0.076 0.004
#> SRR1201678 2 0.2125 0.8071 0.000 0.920 0.076 0.004
#> SRR1201682 2 0.0524 0.8412 0.000 0.988 0.008 0.004
#> SRR1201683 2 0.0524 0.8412 0.000 0.988 0.008 0.004
#> SRR1201680 2 0.0524 0.8412 0.000 0.988 0.008 0.004
#> SRR1201681 2 0.0524 0.8412 0.000 0.988 0.008 0.004
#> SRR1201679 2 0.0524 0.8407 0.000 0.988 0.008 0.004
#> SRR1201686 3 0.5137 0.8161 0.000 0.452 0.544 0.004
#> SRR1201687 3 0.5126 0.8230 0.000 0.444 0.552 0.004
#> SRR1201688 3 0.5268 0.8156 0.000 0.452 0.540 0.008
#> SRR1201689 3 0.5273 0.8094 0.000 0.456 0.536 0.008
#> SRR1201685 3 0.5465 0.8343 0.000 0.392 0.588 0.020
#> SRR1201692 2 0.1978 0.8134 0.000 0.928 0.068 0.004
#> SRR1201691 2 0.2053 0.8106 0.000 0.924 0.072 0.004
#> SRR1201690 2 0.3300 0.7096 0.000 0.848 0.144 0.008
#> SRR1201696 2 0.2053 0.8106 0.000 0.924 0.072 0.004
#> SRR1201695 2 0.2053 0.8106 0.000 0.924 0.072 0.004
#> SRR1201694 2 0.1902 0.8164 0.000 0.932 0.064 0.004
#> SRR1201693 2 0.2053 0.8106 0.000 0.924 0.072 0.004
#> SRR1201697 2 0.2053 0.8106 0.000 0.924 0.072 0.004
#> SRR1201698 2 0.1824 0.8191 0.000 0.936 0.060 0.004
#> SRR1201700 2 0.4428 0.3573 0.000 0.720 0.276 0.004
#> SRR1201708 2 0.4535 0.2887 0.000 0.704 0.292 0.004
#> SRR1201707 2 0.4535 0.2887 0.000 0.704 0.292 0.004
#> SRR1201706 2 0.4535 0.2887 0.000 0.704 0.292 0.004
#> SRR1201702 2 0.4535 0.2887 0.000 0.704 0.292 0.004
#> SRR1201705 2 0.4509 0.3047 0.000 0.708 0.288 0.004
#> SRR1201701 2 0.4535 0.2887 0.000 0.704 0.292 0.004
#> SRR1201704 2 0.4509 0.3047 0.000 0.708 0.288 0.004
#> SRR1201703 2 0.4697 0.2540 0.000 0.696 0.296 0.008
#> SRR1201716 2 0.5279 -0.3326 0.000 0.588 0.400 0.012
#> SRR1201715 2 0.5172 -0.3406 0.000 0.588 0.404 0.008
#> SRR1201717 2 0.5172 -0.3406 0.000 0.588 0.404 0.008
#> SRR1201712 2 0.5183 -0.3590 0.000 0.584 0.408 0.008
#> SRR1201709 2 0.5183 -0.3581 0.000 0.584 0.408 0.008
#> SRR1201711 2 0.5172 -0.3406 0.000 0.588 0.404 0.008
#> SRR1201714 2 0.5279 -0.3326 0.000 0.588 0.400 0.012
#> SRR1201713 2 0.5268 -0.3134 0.000 0.592 0.396 0.012
#> SRR1201710 2 0.5172 -0.3406 0.000 0.588 0.404 0.008
#> SRR1201719 2 0.1059 0.8380 0.000 0.972 0.016 0.012
#> SRR1201718 2 0.1059 0.8415 0.000 0.972 0.016 0.012
#> SRR1201721 2 0.3355 0.6834 0.000 0.836 0.160 0.004
#> SRR1201720 2 0.3908 0.5618 0.000 0.784 0.212 0.004
#> SRR1201723 3 0.5388 0.8119 0.000 0.456 0.532 0.012
#> SRR1201722 3 0.5212 0.8350 0.000 0.420 0.572 0.008
#> SRR1201725 2 0.1059 0.8416 0.000 0.972 0.016 0.012
#> SRR1201724 2 0.0937 0.8420 0.000 0.976 0.012 0.012
#> SRR1201726 2 0.5236 -0.4673 0.000 0.560 0.432 0.008
#> SRR1201727 2 0.4722 0.2346 0.000 0.692 0.300 0.008
#> SRR1201731 2 0.2466 0.7864 0.000 0.900 0.096 0.004
#> SRR1201730 2 0.2401 0.7915 0.000 0.904 0.092 0.004
#> SRR1201734 2 0.1182 0.8364 0.000 0.968 0.016 0.016
#> SRR1201733 2 0.1059 0.8385 0.000 0.972 0.012 0.016
#> SRR1201736 2 0.1489 0.8323 0.000 0.952 0.044 0.004
#> SRR1201737 2 0.1489 0.8281 0.000 0.952 0.044 0.004
#> SRR1201739 2 0.0672 0.8416 0.000 0.984 0.008 0.008
#> SRR1201738 2 0.0336 0.8408 0.000 0.992 0.008 0.000
#> SRR1201742 2 0.1824 0.8202 0.000 0.936 0.060 0.004
#> SRR1201743 2 0.1661 0.8239 0.000 0.944 0.052 0.004
#> SRR1201745 2 0.2494 0.7832 0.000 0.916 0.036 0.048
#> SRR1201744 2 0.3156 0.7320 0.000 0.884 0.048 0.068
#> SRR1201749 2 0.0672 0.8393 0.000 0.984 0.008 0.008
#> SRR1201750 2 0.0804 0.8380 0.000 0.980 0.012 0.008
#> SRR1201752 2 0.2401 0.7906 0.000 0.904 0.092 0.004
#> SRR1201751 2 0.2654 0.7707 0.000 0.888 0.108 0.004
#> SRR1201754 2 0.1411 0.8269 0.000 0.960 0.020 0.020
#> SRR1201753 2 0.1624 0.8211 0.000 0.952 0.020 0.028
#> SRR1201758 3 0.5733 0.7346 0.012 0.308 0.652 0.028
#> SRR1201759 3 0.5024 0.8214 0.000 0.360 0.632 0.008
#> SRR1201760 2 0.3402 0.6737 0.000 0.832 0.164 0.004
#> SRR1201761 2 0.3583 0.6383 0.000 0.816 0.180 0.004
#> SRR1201763 3 0.6464 0.8078 0.000 0.384 0.540 0.076
#> SRR1201762 3 0.5912 0.3630 0.032 0.188 0.724 0.056
#> SRR1201764 2 0.2266 0.8061 0.000 0.912 0.084 0.004
#> SRR1201766 2 0.0524 0.8405 0.000 0.988 0.008 0.004
#> SRR1201768 2 0.0524 0.8405 0.000 0.988 0.008 0.004
#> SRR1201769 2 0.0524 0.8405 0.000 0.988 0.008 0.004
#> SRR1201767 2 0.0524 0.8405 0.000 0.988 0.008 0.004
#> SRR1201770 2 0.0524 0.8405 0.000 0.988 0.008 0.004
#> SRR1201771 2 0.0524 0.8405 0.000 0.988 0.008 0.004
#> SRR1201772 2 0.0524 0.8405 0.000 0.988 0.008 0.004
#> SRR1201773 2 0.0524 0.8405 0.000 0.988 0.008 0.004
#> SRR1201774 2 0.0524 0.8405 0.000 0.988 0.008 0.004
#> SRR1201786 2 0.0672 0.8393 0.000 0.984 0.008 0.008
#> SRR1201784 2 0.0672 0.8393 0.000 0.984 0.008 0.008
#> SRR1201785 2 0.0804 0.8380 0.000 0.980 0.012 0.008
#> SRR1201778 2 0.0672 0.8393 0.000 0.984 0.008 0.008
#> SRR1201779 2 0.0672 0.8393 0.000 0.984 0.008 0.008
#> SRR1201781 2 0.0672 0.8393 0.000 0.984 0.008 0.008
#> SRR1201780 2 0.0672 0.8393 0.000 0.984 0.008 0.008
#> SRR1201783 2 0.0672 0.8393 0.000 0.984 0.008 0.008
#> SRR1201782 2 0.0804 0.8380 0.000 0.980 0.012 0.008
#> SRR1201798 2 0.1059 0.8344 0.000 0.972 0.012 0.016
#> SRR1201797 2 0.1059 0.8344 0.000 0.972 0.012 0.016
#> SRR1201796 2 0.1059 0.8344 0.000 0.972 0.012 0.016
#> SRR1201795 2 0.1059 0.8344 0.000 0.972 0.012 0.016
#> SRR1201799 2 0.1059 0.8344 0.000 0.972 0.012 0.016
#> SRR1201794 2 0.1059 0.8344 0.000 0.972 0.012 0.016
#> SRR1201793 2 0.1059 0.8344 0.000 0.972 0.012 0.016
#> SRR1201792 2 0.1059 0.8344 0.000 0.972 0.012 0.016
#> SRR1201791 2 0.1059 0.8344 0.000 0.972 0.012 0.016
#> SRR1201807 2 0.2224 0.7952 0.000 0.928 0.032 0.040
#> SRR1201808 2 0.2224 0.7952 0.000 0.928 0.032 0.040
#> SRR1201803 2 0.2224 0.7952 0.000 0.928 0.032 0.040
#> SRR1201804 2 0.2224 0.7952 0.000 0.928 0.032 0.040
#> SRR1201805 2 0.2224 0.7952 0.000 0.928 0.032 0.040
#> SRR1201806 2 0.2224 0.7952 0.000 0.928 0.032 0.040
#> SRR1201801 2 0.2224 0.7952 0.000 0.928 0.032 0.040
#> SRR1201802 2 0.2124 0.8000 0.000 0.932 0.028 0.040
#> SRR1201800 2 0.2131 0.8010 0.000 0.932 0.036 0.032
#> SRR1201814 2 0.1297 0.8298 0.000 0.964 0.020 0.016
#> SRR1201816 2 0.1297 0.8298 0.000 0.964 0.020 0.016
#> SRR1201815 2 0.1297 0.8298 0.000 0.964 0.020 0.016
#> SRR1201819 2 0.1297 0.8298 0.000 0.964 0.020 0.016
#> SRR1201820 2 0.1297 0.8298 0.000 0.964 0.020 0.016
#> SRR1201813 2 0.1297 0.8298 0.000 0.964 0.020 0.016
#> SRR1201817 2 0.1297 0.8298 0.000 0.964 0.020 0.016
#> SRR1201818 2 0.1297 0.8298 0.000 0.964 0.020 0.016
#> SRR1201825 2 0.5339 -0.1547 0.000 0.624 0.356 0.020
#> SRR1201827 2 0.1305 0.8322 0.000 0.960 0.036 0.004
#> SRR1201828 2 0.1305 0.8322 0.000 0.960 0.036 0.004
#> SRR1201826 2 0.1576 0.8263 0.000 0.948 0.048 0.004
#> SRR1201829 2 0.1209 0.8340 0.000 0.964 0.032 0.004
#> SRR1201830 2 0.1209 0.8340 0.000 0.964 0.032 0.004
#> SRR1201831 2 0.1305 0.8322 0.000 0.960 0.036 0.004
#> SRR1201832 2 0.1305 0.8322 0.000 0.960 0.036 0.004
#> SRR1201833 2 0.1305 0.8322 0.000 0.960 0.036 0.004
#> SRR1201865 2 0.2048 0.8162 0.000 0.928 0.064 0.008
#> SRR1201866 2 0.2048 0.8162 0.000 0.928 0.064 0.008
#> SRR1201867 2 0.2048 0.8162 0.000 0.928 0.064 0.008
#> SRR1201861 2 0.2048 0.8162 0.000 0.928 0.064 0.008
#> SRR1201862 2 0.2048 0.8162 0.000 0.928 0.064 0.008
#> SRR1201863 2 0.2048 0.8162 0.000 0.928 0.064 0.008
#> SRR1201859 2 0.3217 0.7329 0.000 0.860 0.128 0.012
#> SRR1201864 2 0.2048 0.8162 0.000 0.928 0.064 0.008
#> SRR1201860 2 0.2048 0.8162 0.000 0.928 0.064 0.008
#> SRR1201873 2 0.4584 0.2601 0.000 0.696 0.300 0.004
#> SRR1201871 2 0.5403 -0.1427 0.000 0.628 0.348 0.024
#> SRR1201872 2 0.4483 0.3301 0.000 0.712 0.284 0.004
#> SRR1201980 2 0.2401 0.7906 0.000 0.904 0.092 0.004
#> SRR1201979 2 0.2888 0.7467 0.000 0.872 0.124 0.004
#> SRR1201982 2 0.2053 0.8110 0.000 0.924 0.072 0.004
#> SRR1201981 2 0.2125 0.8101 0.000 0.920 0.076 0.004
#> SRR1201998 2 0.0895 0.8377 0.000 0.976 0.020 0.004
#> SRR1201996 2 0.1209 0.8342 0.000 0.964 0.032 0.004
#> SRR1201997 2 0.0524 0.8402 0.000 0.988 0.008 0.004
#> SRR1202005 2 0.1182 0.8323 0.000 0.968 0.016 0.016
#> SRR1202006 2 0.1833 0.8123 0.000 0.944 0.024 0.032
#> SRR1202088 2 0.4836 0.1349 0.000 0.672 0.320 0.008
#> SRR1202087 2 0.5172 -0.3406 0.000 0.588 0.404 0.008
#> SRR1202093 2 0.1824 0.8196 0.000 0.936 0.060 0.004
#> SRR1202092 2 0.2197 0.8035 0.000 0.916 0.080 0.004
#> SRR1202288 2 0.1284 0.8315 0.000 0.964 0.012 0.024
#> SRR1202289 2 0.1520 0.8245 0.000 0.956 0.020 0.024
#> SRR1202299 2 0.1733 0.8167 0.000 0.948 0.028 0.024
#> SRR1202298 2 0.1297 0.8298 0.000 0.964 0.020 0.016
#> SRR1202303 3 0.6660 0.7611 0.000 0.452 0.464 0.084
#> SRR1202372 2 0.1182 0.8323 0.000 0.968 0.016 0.016
#> SRR1202371 2 0.1406 0.8275 0.000 0.960 0.016 0.024
#> SRR1202563 2 0.1297 0.8405 0.000 0.964 0.020 0.016
#> SRR1202565 2 0.0937 0.8417 0.000 0.976 0.012 0.012
#> SRR1202564 2 0.0937 0.8420 0.000 0.976 0.012 0.012
#> SRR1202649 2 0.1767 0.8312 0.000 0.944 0.044 0.012
#> SRR1202650 2 0.0817 0.8380 0.000 0.976 0.024 0.000
#> SRR1202651 2 0.1182 0.8323 0.000 0.968 0.016 0.016
#> SRR1202843 1 0.7760 0.5018 0.612 0.116 0.088 0.184
#> SRR1202844 1 0.6773 0.6391 0.696 0.076 0.092 0.136
#> SRR1202845 2 0.0524 0.8405 0.000 0.988 0.008 0.004
#> SRR1202847 2 0.0937 0.8364 0.000 0.976 0.012 0.012
#> SRR1202846 2 0.0937 0.8364 0.000 0.976 0.012 0.012
#> SRR1202945 1 0.8227 0.5107 0.556 0.088 0.128 0.228
#> SRR1202949 1 0.7982 0.4994 0.564 0.076 0.108 0.252
#> SRR1202977 1 0.5758 0.6194 0.728 0.016 0.072 0.184
#> SRR1202978 1 0.6052 0.6010 0.704 0.020 0.072 0.204
#> SRR1202979 1 0.6803 0.5884 0.644 0.036 0.076 0.244
#> SRR1202990 1 0.6352 0.6200 0.652 0.044 0.032 0.272
#> SRR1202999 1 0.5920 0.6503 0.736 0.024 0.100 0.140
#> SRR1203005 1 0.6586 0.6329 0.676 0.036 0.080 0.208
#> SRR1203006 1 0.7551 0.6034 0.620 0.076 0.100 0.204
#> SRR1203007 1 0.6570 0.6486 0.700 0.076 0.060 0.164
#> SRR1203009 1 0.9587 -0.2417 0.392 0.156 0.220 0.232
#> SRR1203008 1 0.9894 -0.1326 0.288 0.272 0.260 0.180
#> SRR1203010 1 0.7593 0.5704 0.636 0.100 0.128 0.136
#> SRR1203011 1 0.6017 0.6582 0.720 0.032 0.064 0.184
#> SRR1203025 1 0.6144 0.6533 0.724 0.032 0.096 0.148
#> SRR1203026 1 0.6511 0.6558 0.680 0.040 0.068 0.212
#> SRR1203027 1 0.6482 0.6492 0.692 0.032 0.096 0.180
#> SRR1203061 1 0.7171 0.5609 0.616 0.040 0.092 0.252
#> SRR1203089 1 0.7269 0.4472 0.604 0.028 0.124 0.244
#> SRR1203125 1 0.7713 0.5864 0.600 0.060 0.132 0.208
#> SRR1203128 1 0.7498 0.6161 0.624 0.076 0.096 0.204
#> SRR1203129 1 0.6941 0.6376 0.676 0.076 0.080 0.168
#> SRR1203130 1 0.7766 0.5678 0.612 0.080 0.136 0.172
#> SRR1203132 2 0.2466 0.7860 0.000 0.900 0.096 0.004
#> SRR1203131 2 0.2831 0.7529 0.000 0.876 0.120 0.004
#> SRR1203133 1 0.5229 0.6549 0.780 0.032 0.048 0.140
#> SRR1203138 1 0.7680 0.6028 0.616 0.076 0.124 0.184
#> SRR1203760 1 0.7188 0.6132 0.652 0.064 0.100 0.184
#> SRR1203761 1 0.7507 0.5969 0.620 0.052 0.144 0.184
#> SRR1203770 1 0.7462 0.6156 0.612 0.056 0.104 0.228
#> SRR1203771 1 0.5823 0.6653 0.760 0.060 0.072 0.108
#> SRR1203772 1 0.7271 0.6223 0.644 0.068 0.096 0.192
#> SRR1203773 1 0.6934 0.6014 0.640 0.028 0.108 0.224
#> SRR1203774 1 0.5980 0.5930 0.712 0.020 0.072 0.196
#> SRR1203775 1 0.7075 0.6023 0.656 0.048 0.116 0.180
#> SRR1203800 1 0.5170 0.5879 0.764 0.008 0.064 0.164
#> SRR1203801 1 0.7480 0.5981 0.628 0.068 0.112 0.192
#> SRR1203802 1 0.7387 0.6261 0.640 0.072 0.108 0.180
#> SRR1203803 1 0.6123 0.6658 0.724 0.036 0.080 0.160
#> SRR1203804 1 0.6546 0.6284 0.692 0.036 0.100 0.172
#> SRR1203805 1 0.5554 0.6081 0.728 0.012 0.056 0.204
#> SRR1203806 1 0.6088 0.6181 0.700 0.020 0.072 0.208
#> SRR1203807 1 0.6005 0.6345 0.724 0.032 0.068 0.176
#> SRR1203808 1 0.5658 0.6085 0.724 0.020 0.048 0.208
#> SRR1203811 1 0.6819 0.6018 0.668 0.040 0.100 0.192
#> SRR1203812 1 0.7117 0.6441 0.652 0.060 0.092 0.196
#> SRR1203813 1 0.6389 0.6401 0.692 0.036 0.072 0.200
#> SRR1203814 1 0.6612 0.6586 0.684 0.040 0.088 0.188
#> SRR1203815 1 0.7135 0.6241 0.644 0.060 0.084 0.212
#> SRR1203816 1 0.5193 0.6367 0.772 0.024 0.044 0.160
#> SRR1203817 1 0.7678 0.5553 0.608 0.096 0.084 0.212
#> SRR1203818 1 0.7113 0.6339 0.660 0.052 0.144 0.144
#> SRR1203819 1 0.6447 0.6539 0.712 0.068 0.068 0.152
#> SRR1203822 1 0.8503 0.4259 0.548 0.116 0.164 0.172
#> SRR1203823 1 0.6136 0.6465 0.728 0.040 0.084 0.148
#> SRR1203824 1 0.5055 0.5958 0.760 0.004 0.056 0.180
#> SRR1203825 1 0.7369 0.6224 0.648 0.080 0.112 0.160
#> SRR1203826 1 0.7774 0.5735 0.608 0.080 0.124 0.188
#> SRR1203827 4 0.7948 0.4507 0.308 0.008 0.236 0.448
#> SRR1203828 1 0.5956 0.6346 0.700 0.032 0.040 0.228
#> SRR1203829 1 0.6535 0.6377 0.708 0.068 0.076 0.148
#> SRR1203830 1 0.6707 0.6245 0.676 0.040 0.092 0.192
#> SRR1203831 1 0.5505 0.6186 0.752 0.016 0.072 0.160
#> SRR1203832 1 0.7758 0.5333 0.620 0.096 0.148 0.136
#> SRR1203833 1 0.6391 0.5838 0.656 0.016 0.076 0.252
#> SRR1203834 1 0.7421 0.6052 0.624 0.052 0.124 0.200
#> SRR1203835 1 0.6547 0.6517 0.712 0.064 0.104 0.120
#> SRR1203836 1 0.7187 0.5680 0.624 0.032 0.124 0.220
#> SRR1203837 1 0.5744 0.6248 0.736 0.016 0.084 0.164
#> SRR1203838 1 0.7087 0.6185 0.656 0.056 0.100 0.188
#> SRR1203839 1 0.6449 0.6634 0.704 0.040 0.096 0.160
#> SRR1203842 4 0.6943 0.3577 0.400 0.048 0.032 0.520
#> SRR1203843 1 0.5636 0.5712 0.724 0.008 0.072 0.196
#> SRR1203845 2 0.2408 0.7893 0.000 0.920 0.036 0.044
#> SRR1203844 2 0.2224 0.8002 0.000 0.928 0.032 0.040
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1201591 2 0.1043 0.7987 0.000 0.960 0.000 0.040 0.000
#> SRR1201590 2 0.0807 0.8097 0.000 0.976 0.012 0.012 0.000
#> SRR1201593 2 0.1952 0.7619 0.004 0.912 0.000 0.084 0.000
#> SRR1201592 2 0.1410 0.7869 0.000 0.940 0.000 0.060 0.000
#> SRR1201617 2 0.1732 0.7700 0.000 0.920 0.000 0.080 0.000
#> SRR1201616 2 0.1270 0.7905 0.000 0.948 0.000 0.052 0.000
#> SRR1201619 2 0.1282 0.8020 0.000 0.952 0.044 0.004 0.000
#> SRR1201618 2 0.1638 0.7972 0.000 0.932 0.064 0.004 0.000
#> SRR1201620 2 0.1608 0.7742 0.000 0.928 0.000 0.072 0.000
#> SRR1201621 2 0.1952 0.7619 0.004 0.912 0.000 0.084 0.000
#> SRR1201623 2 0.4444 0.1800 0.000 0.624 0.364 0.012 0.000
#> SRR1201622 2 0.4792 -0.2583 0.000 0.536 0.448 0.008 0.008
#> SRR1201624 3 0.4684 0.5201 0.000 0.208 0.732 0.048 0.012
#> SRR1201625 3 0.4477 0.6692 0.000 0.252 0.708 0.040 0.000
#> SRR1201626 4 0.6557 0.1829 0.008 0.076 0.372 0.512 0.032
#> SRR1201627 3 0.6425 0.1696 0.000 0.212 0.532 0.252 0.004
#> SRR1201628 2 0.3863 0.5559 0.000 0.740 0.248 0.012 0.000
#> SRR1201629 2 0.3013 0.7188 0.000 0.832 0.160 0.008 0.000
#> SRR1201630 2 0.0404 0.8098 0.000 0.988 0.012 0.000 0.000
#> SRR1201631 2 0.0324 0.8097 0.000 0.992 0.004 0.004 0.000
#> SRR1201641 2 0.0451 0.8092 0.000 0.988 0.008 0.004 0.000
#> SRR1201640 2 0.0955 0.8074 0.000 0.968 0.028 0.004 0.000
#> SRR1201643 2 0.1952 0.7853 0.000 0.912 0.084 0.004 0.000
#> SRR1201644 2 0.1830 0.7919 0.000 0.924 0.068 0.008 0.000
#> SRR1201661 2 0.1282 0.7991 0.000 0.952 0.004 0.044 0.000
#> SRR1201662 2 0.1341 0.7900 0.000 0.944 0.000 0.056 0.000
#> SRR1201663 3 0.4464 0.8019 0.000 0.356 0.632 0.004 0.008
#> SRR1201664 3 0.4375 0.7909 0.000 0.364 0.628 0.004 0.004
#> SRR1201665 2 0.1205 0.8081 0.000 0.956 0.040 0.004 0.000
#> SRR1201666 2 0.0324 0.8092 0.000 0.992 0.004 0.004 0.000
#> SRR1201667 2 0.0324 0.8092 0.000 0.992 0.004 0.004 0.000
#> SRR1201668 3 0.4370 0.7954 0.000 0.332 0.656 0.004 0.008
#> SRR1201670 3 0.4347 0.8025 0.000 0.356 0.636 0.004 0.004
#> SRR1201669 3 0.4347 0.8025 0.000 0.356 0.636 0.004 0.004
#> SRR1201673 2 0.2536 0.7560 0.000 0.868 0.128 0.004 0.000
#> SRR1201672 2 0.2536 0.7560 0.000 0.868 0.128 0.004 0.000
#> SRR1201671 2 0.3355 0.6771 0.000 0.804 0.184 0.012 0.000
#> SRR1201677 2 0.2536 0.7560 0.000 0.868 0.128 0.004 0.000
#> SRR1201676 2 0.2536 0.7560 0.000 0.868 0.128 0.004 0.000
#> SRR1201675 2 0.2536 0.7560 0.000 0.868 0.128 0.004 0.000
#> SRR1201674 2 0.2536 0.7560 0.000 0.868 0.128 0.004 0.000
#> SRR1201678 2 0.2536 0.7560 0.000 0.868 0.128 0.004 0.000
#> SRR1201682 2 0.0451 0.8092 0.000 0.988 0.008 0.004 0.000
#> SRR1201683 2 0.0451 0.8092 0.000 0.988 0.008 0.004 0.000
#> SRR1201680 2 0.0451 0.8092 0.000 0.988 0.008 0.004 0.000
#> SRR1201681 2 0.0451 0.8092 0.000 0.988 0.008 0.004 0.000
#> SRR1201679 2 0.0566 0.8089 0.000 0.984 0.004 0.012 0.000
#> SRR1201686 3 0.4347 0.8025 0.000 0.356 0.636 0.004 0.004
#> SRR1201687 3 0.4333 0.8036 0.000 0.352 0.640 0.004 0.004
#> SRR1201688 3 0.4333 0.8036 0.000 0.352 0.640 0.004 0.004
#> SRR1201689 3 0.4347 0.8025 0.000 0.356 0.636 0.004 0.004
#> SRR1201685 3 0.4560 0.7601 0.000 0.304 0.672 0.008 0.016
#> SRR1201692 2 0.2753 0.7462 0.000 0.856 0.136 0.008 0.000
#> SRR1201691 2 0.2798 0.7418 0.000 0.852 0.140 0.008 0.000
#> SRR1201690 2 0.3455 0.6402 0.000 0.784 0.208 0.008 0.000
#> SRR1201696 2 0.2798 0.7418 0.000 0.852 0.140 0.008 0.000
#> SRR1201695 2 0.2753 0.7462 0.000 0.856 0.136 0.008 0.000
#> SRR1201694 2 0.2707 0.7502 0.000 0.860 0.132 0.008 0.000
#> SRR1201693 2 0.2798 0.7418 0.000 0.852 0.140 0.008 0.000
#> SRR1201697 2 0.2707 0.7502 0.000 0.860 0.132 0.008 0.000
#> SRR1201698 2 0.2563 0.7601 0.000 0.872 0.120 0.008 0.000
#> SRR1201700 2 0.4165 0.3691 0.000 0.672 0.320 0.008 0.000
#> SRR1201708 2 0.4451 0.2760 0.000 0.644 0.340 0.016 0.000
#> SRR1201707 2 0.4371 0.2746 0.000 0.644 0.344 0.012 0.000
#> SRR1201706 2 0.4451 0.2760 0.000 0.644 0.340 0.016 0.000
#> SRR1201702 2 0.4451 0.2760 0.000 0.644 0.340 0.016 0.000
#> SRR1201705 2 0.4418 0.3060 0.000 0.652 0.332 0.016 0.000
#> SRR1201701 2 0.4387 0.2590 0.000 0.640 0.348 0.012 0.000
#> SRR1201704 2 0.4356 0.2898 0.000 0.648 0.340 0.012 0.000
#> SRR1201703 2 0.4467 0.2603 0.000 0.640 0.344 0.016 0.000
#> SRR1201716 2 0.4297 -0.3046 0.000 0.528 0.472 0.000 0.000
#> SRR1201715 2 0.4297 -0.3046 0.000 0.528 0.472 0.000 0.000
#> SRR1201717 2 0.4297 -0.3046 0.000 0.528 0.472 0.000 0.000
#> SRR1201712 2 0.4443 -0.3214 0.000 0.524 0.472 0.004 0.000
#> SRR1201709 2 0.4449 -0.3836 0.000 0.512 0.484 0.000 0.004
#> SRR1201711 2 0.4297 -0.3046 0.000 0.528 0.472 0.000 0.000
#> SRR1201714 2 0.4297 -0.3046 0.000 0.528 0.472 0.000 0.000
#> SRR1201713 2 0.4297 -0.3046 0.000 0.528 0.472 0.000 0.000
#> SRR1201710 2 0.4297 -0.3046 0.000 0.528 0.472 0.000 0.000
#> SRR1201719 2 0.1043 0.7987 0.000 0.960 0.000 0.040 0.000
#> SRR1201718 2 0.0807 0.8103 0.000 0.976 0.012 0.012 0.000
#> SRR1201721 2 0.3496 0.6521 0.000 0.788 0.200 0.012 0.000
#> SRR1201720 2 0.3957 0.4853 0.000 0.712 0.280 0.008 0.000
#> SRR1201723 3 0.4182 0.8024 0.000 0.352 0.644 0.000 0.004
#> SRR1201722 3 0.4236 0.7923 0.000 0.328 0.664 0.004 0.004
#> SRR1201725 2 0.1168 0.8081 0.000 0.960 0.008 0.032 0.000
#> SRR1201724 2 0.0898 0.8090 0.000 0.972 0.008 0.020 0.000
#> SRR1201726 3 0.4307 0.4114 0.000 0.496 0.504 0.000 0.000
#> SRR1201727 2 0.4457 0.1722 0.000 0.620 0.368 0.012 0.000
#> SRR1201731 2 0.2818 0.7479 0.000 0.856 0.132 0.012 0.000
#> SRR1201730 2 0.2660 0.7552 0.000 0.864 0.128 0.008 0.000
#> SRR1201734 2 0.1043 0.7987 0.000 0.960 0.000 0.040 0.000
#> SRR1201733 2 0.0404 0.8074 0.000 0.988 0.000 0.012 0.000
#> SRR1201736 2 0.2011 0.7865 0.000 0.908 0.088 0.004 0.000
#> SRR1201737 2 0.1704 0.7938 0.000 0.928 0.068 0.004 0.000
#> SRR1201739 2 0.0579 0.8097 0.000 0.984 0.008 0.008 0.000
#> SRR1201738 2 0.0865 0.8084 0.000 0.972 0.024 0.004 0.000
#> SRR1201742 2 0.2286 0.7706 0.000 0.888 0.108 0.004 0.000
#> SRR1201743 2 0.2077 0.7833 0.000 0.908 0.084 0.008 0.000
#> SRR1201745 2 0.2124 0.7487 0.004 0.900 0.000 0.096 0.000
#> SRR1201744 2 0.2831 0.7110 0.004 0.868 0.004 0.116 0.008
#> SRR1201749 2 0.0451 0.8088 0.000 0.988 0.004 0.008 0.000
#> SRR1201750 2 0.0324 0.8078 0.000 0.992 0.004 0.004 0.000
#> SRR1201752 2 0.2930 0.7166 0.000 0.832 0.164 0.004 0.000
#> SRR1201751 2 0.3282 0.6780 0.000 0.804 0.188 0.008 0.000
#> SRR1201754 2 0.1608 0.7773 0.000 0.928 0.000 0.072 0.000
#> SRR1201753 2 0.1410 0.7871 0.000 0.940 0.000 0.060 0.000
#> SRR1201758 3 0.4971 0.4441 0.012 0.180 0.744 0.024 0.040
#> SRR1201759 3 0.3989 0.6974 0.000 0.260 0.728 0.008 0.004
#> SRR1201760 2 0.3756 0.5581 0.000 0.744 0.248 0.008 0.000
#> SRR1201761 2 0.3861 0.5252 0.000 0.728 0.264 0.008 0.000
#> SRR1201763 3 0.6155 0.5839 0.000 0.276 0.548 0.176 0.000
#> SRR1201762 3 0.6572 -0.3578 0.036 0.100 0.644 0.188 0.032
#> SRR1201764 2 0.2513 0.7666 0.000 0.876 0.116 0.008 0.000
#> SRR1201766 2 0.0451 0.8092 0.000 0.988 0.008 0.004 0.000
#> SRR1201768 2 0.0451 0.8092 0.000 0.988 0.008 0.004 0.000
#> SRR1201769 2 0.0451 0.8092 0.000 0.988 0.008 0.004 0.000
#> SRR1201767 2 0.0451 0.8092 0.000 0.988 0.008 0.004 0.000
#> SRR1201770 2 0.0451 0.8092 0.000 0.988 0.008 0.004 0.000
#> SRR1201771 2 0.0324 0.8086 0.000 0.992 0.004 0.004 0.000
#> SRR1201772 2 0.0451 0.8092 0.000 0.988 0.008 0.004 0.000
#> SRR1201773 2 0.0451 0.8092 0.000 0.988 0.008 0.004 0.000
#> SRR1201774 2 0.0451 0.8092 0.000 0.988 0.008 0.004 0.000
#> SRR1201786 2 0.0324 0.8078 0.000 0.992 0.004 0.004 0.000
#> SRR1201784 2 0.0324 0.8078 0.000 0.992 0.004 0.004 0.000
#> SRR1201785 2 0.0324 0.8078 0.000 0.992 0.004 0.004 0.000
#> SRR1201778 2 0.0566 0.8084 0.000 0.984 0.004 0.012 0.000
#> SRR1201779 2 0.0451 0.8077 0.000 0.988 0.004 0.008 0.000
#> SRR1201781 2 0.0324 0.8078 0.000 0.992 0.004 0.004 0.000
#> SRR1201780 2 0.0324 0.8078 0.000 0.992 0.004 0.004 0.000
#> SRR1201783 2 0.0324 0.8078 0.000 0.992 0.004 0.004 0.000
#> SRR1201782 2 0.0324 0.8078 0.000 0.992 0.004 0.004 0.000
#> SRR1201798 2 0.1270 0.7925 0.000 0.948 0.000 0.052 0.000
#> SRR1201797 2 0.1270 0.7925 0.000 0.948 0.000 0.052 0.000
#> SRR1201796 2 0.1270 0.7925 0.000 0.948 0.000 0.052 0.000
#> SRR1201795 2 0.1270 0.7925 0.000 0.948 0.000 0.052 0.000
#> SRR1201799 2 0.1270 0.7925 0.000 0.948 0.000 0.052 0.000
#> SRR1201794 2 0.1270 0.7925 0.000 0.948 0.000 0.052 0.000
#> SRR1201793 2 0.1270 0.7925 0.000 0.948 0.000 0.052 0.000
#> SRR1201792 2 0.1270 0.7925 0.000 0.948 0.000 0.052 0.000
#> SRR1201791 2 0.0880 0.8008 0.000 0.968 0.000 0.032 0.000
#> SRR1201807 2 0.2112 0.7555 0.004 0.908 0.004 0.084 0.000
#> SRR1201808 2 0.2112 0.7555 0.004 0.908 0.004 0.084 0.000
#> SRR1201803 2 0.2170 0.7551 0.004 0.904 0.004 0.088 0.000
#> SRR1201804 2 0.2112 0.7555 0.004 0.908 0.004 0.084 0.000
#> SRR1201805 2 0.2112 0.7555 0.004 0.908 0.004 0.084 0.000
#> SRR1201806 2 0.2170 0.7551 0.004 0.904 0.004 0.088 0.000
#> SRR1201801 2 0.2112 0.7555 0.004 0.908 0.004 0.084 0.000
#> SRR1201802 2 0.2112 0.7555 0.004 0.908 0.004 0.084 0.000
#> SRR1201800 2 0.1991 0.7660 0.004 0.916 0.004 0.076 0.000
#> SRR1201814 2 0.1357 0.7913 0.000 0.948 0.004 0.048 0.000
#> SRR1201816 2 0.1357 0.7913 0.000 0.948 0.004 0.048 0.000
#> SRR1201815 2 0.1357 0.7913 0.000 0.948 0.004 0.048 0.000
#> SRR1201819 2 0.1357 0.7913 0.000 0.948 0.004 0.048 0.000
#> SRR1201820 2 0.1282 0.7939 0.000 0.952 0.004 0.044 0.000
#> SRR1201813 2 0.1205 0.7963 0.000 0.956 0.004 0.040 0.000
#> SRR1201817 2 0.1357 0.7913 0.000 0.948 0.004 0.048 0.000
#> SRR1201818 2 0.1282 0.7939 0.000 0.952 0.004 0.044 0.000
#> SRR1201825 2 0.4680 -0.2540 0.000 0.540 0.448 0.004 0.008
#> SRR1201827 2 0.1628 0.7970 0.000 0.936 0.056 0.008 0.000
#> SRR1201828 2 0.1628 0.7970 0.000 0.936 0.056 0.008 0.000
#> SRR1201826 2 0.1894 0.7896 0.000 0.920 0.072 0.008 0.000
#> SRR1201829 2 0.1557 0.7986 0.000 0.940 0.052 0.008 0.000
#> SRR1201830 2 0.1557 0.7986 0.000 0.940 0.052 0.008 0.000
#> SRR1201831 2 0.1557 0.7986 0.000 0.940 0.052 0.008 0.000
#> SRR1201832 2 0.1557 0.7986 0.000 0.940 0.052 0.008 0.000
#> SRR1201833 2 0.1557 0.7986 0.000 0.940 0.052 0.008 0.000
#> SRR1201865 2 0.2798 0.7456 0.000 0.852 0.140 0.008 0.000
#> SRR1201866 2 0.2929 0.7319 0.000 0.840 0.152 0.008 0.000
#> SRR1201867 2 0.2843 0.7413 0.000 0.848 0.144 0.008 0.000
#> SRR1201861 2 0.2997 0.7334 0.000 0.840 0.148 0.012 0.000
#> SRR1201862 2 0.2753 0.7497 0.000 0.856 0.136 0.008 0.000
#> SRR1201863 2 0.2753 0.7497 0.000 0.856 0.136 0.008 0.000
#> SRR1201859 2 0.4236 0.5341 0.000 0.728 0.248 0.016 0.008
#> SRR1201864 2 0.2753 0.7497 0.000 0.856 0.136 0.008 0.000
#> SRR1201860 2 0.2886 0.7367 0.000 0.844 0.148 0.008 0.000
#> SRR1201873 2 0.4522 -0.1879 0.000 0.552 0.440 0.008 0.000
#> SRR1201871 2 0.5002 -0.4392 0.000 0.492 0.484 0.016 0.008
#> SRR1201872 2 0.4510 -0.1485 0.000 0.560 0.432 0.008 0.000
#> SRR1201980 2 0.2886 0.7324 0.000 0.844 0.148 0.008 0.000
#> SRR1201979 2 0.3010 0.7062 0.000 0.824 0.172 0.004 0.000
#> SRR1201982 2 0.2470 0.7719 0.000 0.884 0.104 0.012 0.000
#> SRR1201981 2 0.2536 0.7552 0.000 0.868 0.128 0.004 0.000
#> SRR1201998 2 0.1281 0.8055 0.000 0.956 0.032 0.012 0.000
#> SRR1201996 2 0.1106 0.8071 0.000 0.964 0.024 0.012 0.000
#> SRR1201997 2 0.0579 0.8095 0.000 0.984 0.008 0.008 0.000
#> SRR1202005 2 0.1341 0.7900 0.000 0.944 0.000 0.056 0.000
#> SRR1202006 2 0.1892 0.7660 0.004 0.916 0.000 0.080 0.000
#> SRR1202088 2 0.4171 0.0780 0.000 0.604 0.396 0.000 0.000
#> SRR1202087 2 0.4305 -0.3743 0.000 0.512 0.488 0.000 0.000
#> SRR1202093 2 0.2017 0.7860 0.000 0.912 0.080 0.008 0.000
#> SRR1202092 2 0.2719 0.7407 0.000 0.852 0.144 0.004 0.000
#> SRR1202288 2 0.0963 0.7995 0.000 0.964 0.000 0.036 0.000
#> SRR1202289 2 0.1768 0.7738 0.004 0.924 0.000 0.072 0.000
#> SRR1202299 2 0.1704 0.7756 0.000 0.928 0.004 0.068 0.000
#> SRR1202298 2 0.1430 0.7883 0.000 0.944 0.004 0.052 0.000
#> SRR1202303 3 0.6680 0.5764 0.000 0.368 0.428 0.200 0.004
#> SRR1202372 2 0.1270 0.7925 0.000 0.948 0.000 0.052 0.000
#> SRR1202371 2 0.1571 0.7852 0.000 0.936 0.004 0.060 0.000
#> SRR1202563 2 0.1195 0.8080 0.000 0.960 0.012 0.028 0.000
#> SRR1202565 2 0.0693 0.8101 0.000 0.980 0.012 0.008 0.000
#> SRR1202564 2 0.0579 0.8096 0.000 0.984 0.008 0.008 0.000
#> SRR1202649 2 0.1894 0.7947 0.000 0.920 0.072 0.008 0.000
#> SRR1202650 2 0.1430 0.8015 0.000 0.944 0.052 0.004 0.000
#> SRR1202651 2 0.1197 0.7947 0.000 0.952 0.000 0.048 0.000
#> SRR1202843 1 0.7918 0.6852 0.548 0.064 0.080 0.116 0.192
#> SRR1202844 1 0.7443 0.7158 0.600 0.044 0.092 0.136 0.128
#> SRR1202845 2 0.0162 0.8083 0.000 0.996 0.004 0.000 0.000
#> SRR1202847 2 0.1041 0.7992 0.000 0.964 0.004 0.032 0.000
#> SRR1202846 2 0.1041 0.7992 0.000 0.964 0.004 0.032 0.000
#> SRR1202945 1 0.7944 0.6807 0.548 0.068 0.076 0.124 0.184
#> SRR1202949 1 0.8063 0.6108 0.524 0.056 0.080 0.136 0.204
#> SRR1202977 1 0.6496 0.7190 0.632 0.024 0.040 0.080 0.224
#> SRR1202978 1 0.6759 0.6844 0.596 0.020 0.024 0.148 0.212
#> SRR1202979 1 0.7325 0.6734 0.548 0.044 0.040 0.100 0.268
#> SRR1202990 1 0.6792 0.7128 0.608 0.048 0.016 0.116 0.212
#> SRR1202999 1 0.6172 0.7307 0.680 0.012 0.052 0.112 0.144
#> SRR1203005 1 0.6618 0.7312 0.624 0.024 0.068 0.056 0.228
#> SRR1203006 1 0.7786 0.7028 0.552 0.044 0.088 0.120 0.196
#> SRR1203007 1 0.6520 0.7391 0.660 0.032 0.048 0.092 0.168
#> SRR1203009 5 0.9835 -0.3088 0.228 0.188 0.128 0.192 0.264
#> SRR1203008 4 0.9933 0.0388 0.208 0.176 0.160 0.244 0.212
#> SRR1203010 1 0.7704 0.7184 0.572 0.040 0.144 0.112 0.132
#> SRR1203011 1 0.6123 0.7435 0.692 0.028 0.056 0.064 0.160
#> SRR1203025 1 0.6178 0.7200 0.680 0.008 0.072 0.096 0.144
#> SRR1203026 1 0.6472 0.7100 0.676 0.064 0.032 0.092 0.136
#> SRR1203027 1 0.6198 0.7361 0.688 0.028 0.048 0.084 0.152
#> SRR1203061 1 0.7081 0.6655 0.592 0.032 0.052 0.100 0.224
#> SRR1203089 1 0.7292 0.6388 0.580 0.024 0.060 0.168 0.168
#> SRR1203125 1 0.7134 0.6942 0.600 0.028 0.072 0.100 0.200
#> SRR1203128 1 0.7439 0.7135 0.600 0.056 0.068 0.140 0.136
#> SRR1203129 1 0.6974 0.7282 0.636 0.044 0.076 0.084 0.160
#> SRR1203130 1 0.8148 0.5775 0.540 0.100 0.080 0.164 0.116
#> SRR1203132 2 0.2909 0.7392 0.000 0.848 0.140 0.012 0.000
#> SRR1203131 2 0.3086 0.6948 0.000 0.816 0.180 0.004 0.000
#> SRR1203133 1 0.5681 0.7369 0.720 0.032 0.040 0.048 0.160
#> SRR1203138 1 0.7054 0.7388 0.612 0.040 0.052 0.104 0.192
#> SRR1203760 1 0.7254 0.7210 0.600 0.036 0.060 0.148 0.156
#> SRR1203761 1 0.7584 0.6081 0.520 0.036 0.072 0.088 0.284
#> SRR1203770 1 0.7777 0.7075 0.548 0.052 0.068 0.124 0.208
#> SRR1203771 1 0.6986 0.7090 0.620 0.072 0.036 0.080 0.192
#> SRR1203772 1 0.7819 0.6252 0.572 0.100 0.064 0.116 0.148
#> SRR1203773 1 0.7305 0.7166 0.588 0.024 0.084 0.120 0.184
#> SRR1203774 1 0.6269 0.7035 0.644 0.020 0.032 0.080 0.224
#> SRR1203775 1 0.6631 0.7057 0.640 0.016 0.076 0.084 0.184
#> SRR1203800 1 0.6860 0.6674 0.576 0.024 0.040 0.088 0.272
#> SRR1203801 1 0.7254 0.7058 0.596 0.028 0.076 0.120 0.180
#> SRR1203802 1 0.7669 0.6841 0.560 0.060 0.088 0.076 0.216
#> SRR1203803 1 0.7130 0.7209 0.628 0.060 0.068 0.088 0.156
#> SRR1203804 1 0.7078 0.7241 0.608 0.028 0.072 0.100 0.192
#> SRR1203805 1 0.7093 0.7278 0.596 0.028 0.060 0.104 0.212
#> SRR1203806 1 0.7475 0.7134 0.568 0.040 0.056 0.132 0.204
#> SRR1203807 1 0.6797 0.6887 0.592 0.028 0.044 0.076 0.260
#> SRR1203808 1 0.6802 0.7205 0.648 0.056 0.044 0.096 0.156
#> SRR1203811 1 0.6960 0.6945 0.588 0.044 0.048 0.064 0.256
#> SRR1203812 1 0.7391 0.7042 0.596 0.056 0.060 0.112 0.176
#> SRR1203813 1 0.7055 0.7291 0.616 0.048 0.044 0.112 0.180
#> SRR1203814 1 0.6984 0.7349 0.624 0.028 0.064 0.152 0.132
#> SRR1203815 1 0.7379 0.6879 0.544 0.024 0.076 0.092 0.264
#> SRR1203816 1 0.6268 0.7237 0.664 0.008 0.056 0.108 0.164
#> SRR1203817 1 0.7456 0.7051 0.576 0.052 0.072 0.084 0.216
#> SRR1203818 1 0.7028 0.7315 0.636 0.036 0.112 0.124 0.092
#> SRR1203819 1 0.6843 0.7309 0.648 0.056 0.068 0.068 0.160
#> SRR1203822 1 0.8415 0.4530 0.468 0.116 0.036 0.208 0.172
#> SRR1203823 1 0.7242 0.7064 0.592 0.032 0.068 0.108 0.200
#> SRR1203824 1 0.5748 0.7084 0.680 0.000 0.032 0.116 0.172
#> SRR1203825 1 0.6802 0.7312 0.648 0.056 0.044 0.096 0.156
#> SRR1203826 1 0.7878 0.6793 0.536 0.060 0.088 0.088 0.228
#> SRR1203827 5 0.7259 0.1757 0.176 0.000 0.152 0.116 0.556
#> SRR1203828 1 0.6164 0.7266 0.672 0.024 0.032 0.088 0.184
#> SRR1203829 1 0.6632 0.7413 0.672 0.040 0.092 0.080 0.116
#> SRR1203830 1 0.7028 0.7274 0.628 0.032 0.080 0.108 0.152
#> SRR1203831 1 0.5780 0.7236 0.700 0.012 0.048 0.064 0.176
#> SRR1203832 1 0.7573 0.7017 0.560 0.040 0.080 0.100 0.220
#> SRR1203833 1 0.6164 0.6990 0.660 0.012 0.032 0.108 0.188
#> SRR1203834 1 0.8247 0.6502 0.508 0.056 0.100 0.132 0.204
#> SRR1203835 1 0.6779 0.7366 0.660 0.052 0.060 0.104 0.124
#> SRR1203836 1 0.7601 0.6325 0.556 0.068 0.040 0.120 0.216
#> SRR1203837 1 0.6095 0.7299 0.688 0.016 0.052 0.088 0.156
#> SRR1203838 1 0.7094 0.7214 0.596 0.040 0.056 0.084 0.224
#> SRR1203839 1 0.6961 0.7280 0.616 0.032 0.048 0.120 0.184
#> SRR1203842 5 0.7600 0.2271 0.308 0.048 0.016 0.160 0.468
#> SRR1203843 1 0.6577 0.6757 0.624 0.008 0.060 0.100 0.208
#> SRR1203845 2 0.2011 0.7580 0.004 0.908 0.000 0.088 0.000
#> SRR1203844 2 0.2011 0.7580 0.004 0.908 0.000 0.088 0.000
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1201591 3 0.1080 0.7913 0.000 0.000 0.960 0.004 0.032 0.004
#> SRR1201590 3 0.0865 0.7963 0.000 0.000 0.964 0.000 0.036 0.000
#> SRR1201593 3 0.2203 0.7426 0.000 0.000 0.896 0.004 0.084 0.016
#> SRR1201592 3 0.1699 0.7735 0.000 0.004 0.928 0.004 0.060 0.004
#> SRR1201617 3 0.2056 0.7511 0.000 0.000 0.904 0.004 0.080 0.012
#> SRR1201616 3 0.1876 0.7637 0.000 0.004 0.916 0.004 0.072 0.004
#> SRR1201619 3 0.1204 0.7888 0.000 0.000 0.944 0.000 0.056 0.000
#> SRR1201618 3 0.1908 0.7651 0.000 0.000 0.900 0.000 0.096 0.004
#> SRR1201620 3 0.2381 0.7445 0.004 0.004 0.896 0.004 0.076 0.016
#> SRR1201621 3 0.2203 0.7415 0.000 0.000 0.896 0.004 0.084 0.016
#> SRR1201623 3 0.3841 -0.0374 0.000 0.000 0.616 0.000 0.380 0.004
#> SRR1201622 5 0.3868 0.6064 0.000 0.000 0.492 0.000 0.508 0.000
#> SRR1201624 5 0.5480 0.0332 0.000 0.016 0.168 0.096 0.680 0.040
#> SRR1201625 5 0.4580 0.4547 0.000 0.004 0.232 0.068 0.692 0.004
#> SRR1201626 4 0.4280 -0.2042 0.004 0.008 0.024 0.784 0.116 0.064
#> SRR1201627 4 0.5471 0.1541 0.000 0.000 0.140 0.524 0.336 0.000
#> SRR1201628 3 0.3820 0.3865 0.000 0.000 0.700 0.008 0.284 0.008
#> SRR1201629 3 0.2979 0.6555 0.000 0.000 0.804 0.004 0.188 0.004
#> SRR1201630 3 0.0547 0.8024 0.000 0.000 0.980 0.000 0.020 0.000
#> SRR1201631 3 0.0146 0.8014 0.000 0.000 0.996 0.000 0.004 0.000
#> SRR1201641 3 0.0865 0.7964 0.000 0.000 0.964 0.000 0.036 0.000
#> SRR1201640 3 0.1075 0.7927 0.000 0.000 0.952 0.000 0.048 0.000
#> SRR1201643 3 0.2234 0.7395 0.000 0.000 0.872 0.000 0.124 0.004
#> SRR1201644 3 0.1765 0.7661 0.000 0.000 0.904 0.000 0.096 0.000
#> SRR1201661 3 0.1296 0.7899 0.000 0.000 0.948 0.004 0.044 0.004
#> SRR1201662 3 0.1845 0.7616 0.000 0.000 0.916 0.004 0.072 0.008
#> SRR1201663 5 0.4031 0.7149 0.000 0.004 0.324 0.004 0.660 0.008
#> SRR1201664 5 0.3714 0.7261 0.000 0.000 0.340 0.000 0.656 0.004
#> SRR1201665 3 0.1010 0.7970 0.000 0.000 0.960 0.004 0.036 0.000
#> SRR1201666 3 0.0405 0.8019 0.000 0.000 0.988 0.004 0.008 0.000
#> SRR1201667 3 0.0405 0.8019 0.000 0.000 0.988 0.004 0.008 0.000
#> SRR1201668 5 0.3890 0.6588 0.000 0.004 0.292 0.004 0.692 0.008
#> SRR1201670 5 0.4046 0.7184 0.000 0.004 0.328 0.004 0.656 0.008
#> SRR1201669 5 0.4046 0.7184 0.000 0.004 0.328 0.004 0.656 0.008
#> SRR1201673 3 0.2872 0.7009 0.000 0.000 0.832 0.012 0.152 0.004
#> SRR1201672 3 0.2872 0.7009 0.000 0.000 0.832 0.012 0.152 0.004
#> SRR1201671 3 0.3273 0.6012 0.000 0.000 0.776 0.008 0.212 0.004
#> SRR1201677 3 0.2909 0.6950 0.000 0.000 0.828 0.012 0.156 0.004
#> SRR1201676 3 0.2872 0.7009 0.000 0.000 0.832 0.012 0.152 0.004
#> SRR1201675 3 0.2872 0.7005 0.000 0.000 0.832 0.012 0.152 0.004
#> SRR1201674 3 0.2872 0.7009 0.000 0.000 0.832 0.012 0.152 0.004
#> SRR1201678 3 0.2833 0.7057 0.000 0.000 0.836 0.012 0.148 0.004
#> SRR1201682 3 0.0291 0.8020 0.000 0.000 0.992 0.004 0.004 0.000
#> SRR1201683 3 0.0291 0.8020 0.000 0.000 0.992 0.004 0.004 0.000
#> SRR1201680 3 0.0405 0.8020 0.000 0.000 0.988 0.004 0.008 0.000
#> SRR1201681 3 0.0291 0.8020 0.000 0.000 0.992 0.004 0.004 0.000
#> SRR1201679 3 0.0363 0.8000 0.000 0.000 0.988 0.000 0.012 0.000
#> SRR1201686 5 0.3878 0.7110 0.000 0.004 0.320 0.000 0.668 0.008
#> SRR1201687 5 0.3998 0.7042 0.000 0.004 0.316 0.004 0.668 0.008
#> SRR1201688 5 0.4015 0.7103 0.000 0.004 0.320 0.004 0.664 0.008
#> SRR1201689 5 0.3878 0.7110 0.000 0.004 0.320 0.000 0.668 0.008
#> SRR1201685 5 0.3969 0.5924 0.000 0.004 0.268 0.012 0.708 0.008
#> SRR1201692 3 0.2810 0.6998 0.000 0.000 0.832 0.008 0.156 0.004
#> SRR1201691 3 0.2773 0.7046 0.000 0.000 0.836 0.008 0.152 0.004
#> SRR1201690 3 0.3488 0.5218 0.000 0.000 0.744 0.008 0.244 0.004
#> SRR1201696 3 0.2810 0.6998 0.000 0.000 0.832 0.008 0.156 0.004
#> SRR1201695 3 0.2810 0.6998 0.000 0.000 0.832 0.008 0.156 0.004
#> SRR1201694 3 0.2773 0.7046 0.000 0.000 0.836 0.008 0.152 0.004
#> SRR1201693 3 0.2773 0.7046 0.000 0.000 0.836 0.008 0.152 0.004
#> SRR1201697 3 0.2773 0.7046 0.000 0.000 0.836 0.008 0.152 0.004
#> SRR1201698 3 0.2734 0.7093 0.000 0.000 0.840 0.008 0.148 0.004
#> SRR1201700 3 0.3996 0.0950 0.000 0.000 0.636 0.008 0.352 0.004
#> SRR1201708 3 0.4289 0.0979 0.000 0.008 0.636 0.012 0.340 0.004
#> SRR1201707 3 0.4302 0.0748 0.000 0.008 0.632 0.012 0.344 0.004
#> SRR1201706 3 0.4289 0.0978 0.000 0.008 0.636 0.012 0.340 0.004
#> SRR1201702 3 0.4302 0.0748 0.000 0.008 0.632 0.012 0.344 0.004
#> SRR1201705 3 0.4274 0.1197 0.000 0.008 0.640 0.012 0.336 0.004
#> SRR1201701 3 0.4289 0.0977 0.000 0.008 0.636 0.012 0.340 0.004
#> SRR1201704 3 0.4274 0.1197 0.000 0.008 0.640 0.012 0.336 0.004
#> SRR1201703 3 0.4289 0.0977 0.000 0.008 0.636 0.012 0.340 0.004
#> SRR1201716 5 0.3993 0.6552 0.000 0.000 0.476 0.004 0.520 0.000
#> SRR1201715 5 0.3993 0.6552 0.000 0.000 0.476 0.004 0.520 0.000
#> SRR1201717 5 0.3862 0.6565 0.000 0.000 0.476 0.000 0.524 0.000
#> SRR1201712 5 0.3986 0.6750 0.000 0.000 0.464 0.004 0.532 0.000
#> SRR1201709 5 0.3851 0.6795 0.000 0.000 0.460 0.000 0.540 0.000
#> SRR1201711 5 0.3857 0.6704 0.000 0.000 0.468 0.000 0.532 0.000
#> SRR1201714 5 0.3993 0.6552 0.000 0.000 0.476 0.004 0.520 0.000
#> SRR1201713 5 0.3995 0.6450 0.000 0.000 0.480 0.004 0.516 0.000
#> SRR1201710 5 0.3864 0.6473 0.000 0.000 0.480 0.000 0.520 0.000
#> SRR1201719 3 0.1226 0.7876 0.000 0.000 0.952 0.004 0.040 0.004
#> SRR1201718 3 0.0806 0.8024 0.000 0.000 0.972 0.008 0.020 0.000
#> SRR1201721 3 0.3682 0.5467 0.000 0.004 0.752 0.016 0.224 0.004
#> SRR1201720 3 0.4127 0.2744 0.000 0.004 0.672 0.016 0.304 0.004
#> SRR1201723 5 0.3969 0.7217 0.000 0.000 0.332 0.016 0.652 0.000
#> SRR1201722 5 0.4070 0.6871 0.000 0.008 0.308 0.008 0.672 0.004
#> SRR1201725 3 0.0777 0.7990 0.000 0.000 0.972 0.004 0.024 0.000
#> SRR1201724 3 0.0692 0.8002 0.000 0.000 0.976 0.004 0.020 0.000
#> SRR1201726 5 0.3993 0.6542 0.000 0.000 0.476 0.004 0.520 0.000
#> SRR1201727 3 0.4273 -0.0557 0.000 0.004 0.612 0.012 0.368 0.004
#> SRR1201731 3 0.2886 0.7072 0.000 0.000 0.836 0.016 0.144 0.004
#> SRR1201730 3 0.2794 0.7116 0.000 0.000 0.840 0.012 0.144 0.004
#> SRR1201734 3 0.1080 0.7913 0.000 0.000 0.960 0.004 0.032 0.004
#> SRR1201733 3 0.0858 0.8003 0.000 0.000 0.968 0.004 0.028 0.000
#> SRR1201736 3 0.2006 0.7574 0.000 0.000 0.892 0.000 0.104 0.004
#> SRR1201737 3 0.1501 0.7791 0.000 0.000 0.924 0.000 0.076 0.000
#> SRR1201739 3 0.0603 0.8008 0.000 0.000 0.980 0.004 0.016 0.000
#> SRR1201738 3 0.0935 0.7982 0.000 0.000 0.964 0.004 0.032 0.000
#> SRR1201742 3 0.2462 0.7292 0.000 0.000 0.860 0.004 0.132 0.004
#> SRR1201743 3 0.2053 0.7544 0.000 0.000 0.888 0.000 0.108 0.004
#> SRR1201745 3 0.2697 0.7129 0.004 0.004 0.872 0.000 0.092 0.028
#> SRR1201744 3 0.3427 0.6679 0.012 0.004 0.840 0.008 0.096 0.040
#> SRR1201749 3 0.0405 0.8022 0.000 0.004 0.988 0.000 0.008 0.000
#> SRR1201750 3 0.0000 0.8012 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1201752 3 0.3159 0.6724 0.000 0.004 0.812 0.012 0.168 0.004
#> SRR1201751 3 0.3510 0.5875 0.000 0.004 0.768 0.012 0.212 0.004
#> SRR1201754 3 0.2002 0.7542 0.000 0.000 0.908 0.004 0.076 0.012
#> SRR1201753 3 0.2182 0.7522 0.000 0.004 0.904 0.004 0.072 0.016
#> SRR1201758 5 0.4260 0.0939 0.008 0.032 0.152 0.020 0.776 0.012
#> SRR1201759 5 0.4033 0.4254 0.000 0.008 0.220 0.024 0.740 0.008
#> SRR1201760 3 0.3744 0.4515 0.000 0.004 0.720 0.008 0.264 0.004
#> SRR1201761 3 0.3871 0.3711 0.000 0.004 0.696 0.008 0.288 0.004
#> SRR1201763 5 0.6180 0.1519 0.000 0.008 0.232 0.276 0.480 0.004
#> SRR1201762 5 0.7031 -0.7322 0.004 0.040 0.076 0.380 0.432 0.068
#> SRR1201764 3 0.2266 0.7530 0.000 0.000 0.880 0.012 0.108 0.000
#> SRR1201766 3 0.0935 0.8005 0.000 0.004 0.964 0.000 0.032 0.000
#> SRR1201768 3 0.0858 0.8009 0.000 0.004 0.968 0.000 0.028 0.000
#> SRR1201769 3 0.0858 0.8009 0.000 0.004 0.968 0.000 0.028 0.000
#> SRR1201767 3 0.0858 0.8009 0.000 0.004 0.968 0.000 0.028 0.000
#> SRR1201770 3 0.0858 0.8009 0.000 0.004 0.968 0.000 0.028 0.000
#> SRR1201771 3 0.0858 0.8009 0.000 0.004 0.968 0.000 0.028 0.000
#> SRR1201772 3 0.0858 0.8009 0.000 0.004 0.968 0.000 0.028 0.000
#> SRR1201773 3 0.0858 0.8009 0.000 0.004 0.968 0.000 0.028 0.000
#> SRR1201774 3 0.0858 0.8009 0.000 0.004 0.968 0.000 0.028 0.000
#> SRR1201786 3 0.0692 0.7989 0.000 0.004 0.976 0.000 0.020 0.000
#> SRR1201784 3 0.0692 0.7989 0.000 0.004 0.976 0.000 0.020 0.000
#> SRR1201785 3 0.0603 0.7997 0.000 0.004 0.980 0.000 0.016 0.000
#> SRR1201778 3 0.0692 0.8015 0.000 0.004 0.976 0.000 0.020 0.000
#> SRR1201779 3 0.0603 0.7997 0.000 0.004 0.980 0.000 0.016 0.000
#> SRR1201781 3 0.0692 0.7989 0.000 0.004 0.976 0.000 0.020 0.000
#> SRR1201780 3 0.0603 0.7997 0.000 0.004 0.980 0.000 0.016 0.000
#> SRR1201783 3 0.0692 0.7989 0.000 0.004 0.976 0.000 0.020 0.000
#> SRR1201782 3 0.0692 0.7989 0.000 0.004 0.976 0.000 0.020 0.000
#> SRR1201798 3 0.1555 0.7750 0.000 0.000 0.932 0.004 0.060 0.004
#> SRR1201797 3 0.1555 0.7750 0.000 0.000 0.932 0.004 0.060 0.004
#> SRR1201796 3 0.1555 0.7750 0.000 0.000 0.932 0.004 0.060 0.004
#> SRR1201795 3 0.1555 0.7750 0.000 0.000 0.932 0.004 0.060 0.004
#> SRR1201799 3 0.1555 0.7750 0.000 0.000 0.932 0.004 0.060 0.004
#> SRR1201794 3 0.1555 0.7750 0.000 0.000 0.932 0.004 0.060 0.004
#> SRR1201793 3 0.1555 0.7750 0.000 0.000 0.932 0.004 0.060 0.004
#> SRR1201792 3 0.1555 0.7750 0.000 0.000 0.932 0.004 0.060 0.004
#> SRR1201791 3 0.0713 0.7946 0.000 0.000 0.972 0.000 0.028 0.000
#> SRR1201807 3 0.2214 0.7361 0.000 0.004 0.892 0.000 0.092 0.012
#> SRR1201808 3 0.2214 0.7361 0.000 0.004 0.892 0.000 0.092 0.012
#> SRR1201803 3 0.2214 0.7361 0.000 0.004 0.892 0.000 0.092 0.012
#> SRR1201804 3 0.2214 0.7361 0.000 0.004 0.892 0.000 0.092 0.012
#> SRR1201805 3 0.2214 0.7361 0.000 0.004 0.892 0.000 0.092 0.012
#> SRR1201806 3 0.2214 0.7361 0.000 0.004 0.892 0.000 0.092 0.012
#> SRR1201801 3 0.2214 0.7361 0.000 0.004 0.892 0.000 0.092 0.012
#> SRR1201802 3 0.2214 0.7361 0.000 0.004 0.892 0.000 0.092 0.012
#> SRR1201800 3 0.1843 0.7572 0.000 0.004 0.912 0.000 0.080 0.004
#> SRR1201814 3 0.1219 0.7849 0.000 0.004 0.948 0.000 0.048 0.000
#> SRR1201816 3 0.1152 0.7868 0.000 0.004 0.952 0.000 0.044 0.000
#> SRR1201815 3 0.1219 0.7849 0.000 0.004 0.948 0.000 0.048 0.000
#> SRR1201819 3 0.1219 0.7849 0.000 0.004 0.948 0.000 0.048 0.000
#> SRR1201820 3 0.1152 0.7868 0.000 0.004 0.952 0.000 0.044 0.000
#> SRR1201813 3 0.1082 0.7888 0.000 0.004 0.956 0.000 0.040 0.000
#> SRR1201817 3 0.1219 0.7849 0.000 0.004 0.948 0.000 0.048 0.000
#> SRR1201818 3 0.1152 0.7868 0.000 0.004 0.952 0.000 0.044 0.000
#> SRR1201825 5 0.4127 0.6335 0.000 0.004 0.484 0.000 0.508 0.004
#> SRR1201827 3 0.1327 0.7855 0.000 0.000 0.936 0.000 0.064 0.000
#> SRR1201828 3 0.1267 0.7870 0.000 0.000 0.940 0.000 0.060 0.000
#> SRR1201826 3 0.1765 0.7662 0.000 0.000 0.904 0.000 0.096 0.000
#> SRR1201829 3 0.1267 0.7870 0.000 0.000 0.940 0.000 0.060 0.000
#> SRR1201830 3 0.1267 0.7870 0.000 0.000 0.940 0.000 0.060 0.000
#> SRR1201831 3 0.1267 0.7875 0.000 0.000 0.940 0.000 0.060 0.000
#> SRR1201832 3 0.1204 0.7888 0.000 0.000 0.944 0.000 0.056 0.000
#> SRR1201833 3 0.1327 0.7855 0.000 0.000 0.936 0.000 0.064 0.000
#> SRR1201865 3 0.2964 0.6403 0.000 0.000 0.792 0.000 0.204 0.004
#> SRR1201866 3 0.2964 0.6321 0.000 0.000 0.792 0.000 0.204 0.004
#> SRR1201867 3 0.2933 0.6398 0.000 0.000 0.796 0.000 0.200 0.004
#> SRR1201861 3 0.2964 0.6321 0.000 0.000 0.792 0.000 0.204 0.004
#> SRR1201862 3 0.2933 0.6398 0.000 0.000 0.796 0.000 0.200 0.004
#> SRR1201863 3 0.2933 0.6398 0.000 0.000 0.796 0.000 0.200 0.004
#> SRR1201859 3 0.3858 0.3061 0.000 0.004 0.680 0.004 0.308 0.004
#> SRR1201864 3 0.2933 0.6398 0.000 0.000 0.796 0.000 0.200 0.004
#> SRR1201860 3 0.2964 0.6321 0.000 0.000 0.792 0.000 0.204 0.004
#> SRR1201873 3 0.3867 -0.5557 0.000 0.000 0.512 0.000 0.488 0.000
#> SRR1201871 5 0.3966 0.6989 0.000 0.000 0.444 0.000 0.552 0.004
#> SRR1201872 3 0.3860 -0.4941 0.000 0.000 0.528 0.000 0.472 0.000
#> SRR1201980 3 0.3037 0.6841 0.000 0.000 0.820 0.016 0.160 0.004
#> SRR1201979 3 0.3309 0.6283 0.000 0.004 0.788 0.016 0.192 0.000
#> SRR1201982 3 0.2070 0.7647 0.000 0.000 0.896 0.012 0.092 0.000
#> SRR1201981 3 0.2482 0.7168 0.000 0.000 0.848 0.004 0.148 0.000
#> SRR1201998 3 0.1152 0.7941 0.000 0.000 0.952 0.004 0.044 0.000
#> SRR1201996 3 0.1007 0.7946 0.000 0.000 0.956 0.000 0.044 0.000
#> SRR1201997 3 0.0777 0.8000 0.000 0.000 0.972 0.004 0.024 0.000
#> SRR1202005 3 0.1845 0.7616 0.000 0.000 0.916 0.004 0.072 0.008
#> SRR1202006 3 0.1956 0.7542 0.000 0.000 0.908 0.004 0.080 0.008
#> SRR1202088 3 0.4234 -0.1462 0.000 0.004 0.596 0.008 0.388 0.004
#> SRR1202087 5 0.4096 0.6325 0.000 0.000 0.484 0.008 0.508 0.000
#> SRR1202093 3 0.1814 0.7632 0.000 0.000 0.900 0.000 0.100 0.000
#> SRR1202092 3 0.2848 0.6954 0.000 0.000 0.828 0.008 0.160 0.004
#> SRR1202288 3 0.1851 0.7718 0.000 0.004 0.924 0.004 0.056 0.012
#> SRR1202289 3 0.2095 0.7504 0.000 0.000 0.904 0.004 0.076 0.016
#> SRR1202299 3 0.2110 0.7451 0.000 0.004 0.900 0.000 0.084 0.012
#> SRR1202298 3 0.1542 0.7779 0.000 0.004 0.936 0.000 0.052 0.008
#> SRR1202303 3 0.6249 -0.5832 0.000 0.004 0.348 0.324 0.324 0.000
#> SRR1202372 3 0.1555 0.7750 0.000 0.000 0.932 0.004 0.060 0.004
#> SRR1202371 3 0.2094 0.7618 0.004 0.004 0.912 0.000 0.060 0.020
#> SRR1202563 3 0.1338 0.7936 0.000 0.004 0.952 0.004 0.032 0.008
#> SRR1202565 3 0.0692 0.8021 0.000 0.000 0.976 0.004 0.020 0.000
#> SRR1202564 3 0.0777 0.8011 0.000 0.000 0.972 0.004 0.024 0.000
#> SRR1202649 3 0.2006 0.7652 0.000 0.004 0.892 0.000 0.104 0.000
#> SRR1202650 3 0.1444 0.7812 0.000 0.000 0.928 0.000 0.072 0.000
#> SRR1202651 3 0.1471 0.7725 0.000 0.000 0.932 0.000 0.064 0.004
#> SRR1202843 1 0.7432 0.6545 0.584 0.104 0.072 0.096 0.044 0.100
#> SRR1202844 1 0.8231 0.6342 0.480 0.160 0.048 0.096 0.060 0.156
#> SRR1202845 3 0.0547 0.8010 0.000 0.000 0.980 0.000 0.020 0.000
#> SRR1202847 3 0.0790 0.7933 0.000 0.000 0.968 0.000 0.032 0.000
#> SRR1202846 3 0.0790 0.7933 0.000 0.000 0.968 0.000 0.032 0.000
#> SRR1202945 1 0.7526 0.6672 0.572 0.136 0.048 0.088 0.080 0.076
#> SRR1202949 1 0.8192 0.5641 0.456 0.176 0.064 0.060 0.044 0.200
#> SRR1202977 1 0.6679 0.6532 0.596 0.156 0.008 0.052 0.036 0.152
#> SRR1202978 1 0.7115 0.6256 0.560 0.172 0.016 0.080 0.028 0.144
#> SRR1202979 1 0.7632 0.5600 0.448 0.312 0.036 0.044 0.044 0.116
#> SRR1202990 1 0.7131 0.6178 0.552 0.096 0.040 0.044 0.036 0.232
#> SRR1202999 1 0.6023 0.6897 0.688 0.088 0.016 0.068 0.040 0.100
#> SRR1203005 1 0.6566 0.6881 0.636 0.140 0.024 0.060 0.036 0.104
#> SRR1203006 1 0.8027 0.6371 0.496 0.180 0.036 0.084 0.068 0.136
#> SRR1203007 1 0.6592 0.6930 0.636 0.128 0.020 0.068 0.040 0.108
#> SRR1203009 1 0.9884 -0.4173 0.220 0.200 0.172 0.140 0.124 0.144
#> SRR1203008 2 0.9890 -0.0823 0.176 0.212 0.164 0.108 0.188 0.152
#> SRR1203010 1 0.6862 0.6880 0.628 0.104 0.048 0.044 0.060 0.116
#> SRR1203011 1 0.6261 0.6966 0.664 0.148 0.032 0.036 0.056 0.064
#> SRR1203025 1 0.6650 0.6879 0.636 0.108 0.012 0.096 0.072 0.076
#> SRR1203026 1 0.6719 0.6884 0.636 0.088 0.036 0.056 0.052 0.132
#> SRR1203027 1 0.6651 0.6902 0.600 0.132 0.024 0.028 0.036 0.180
#> SRR1203061 1 0.7313 0.4812 0.496 0.208 0.004 0.072 0.032 0.188
#> SRR1203089 1 0.7785 0.5778 0.480 0.240 0.016 0.084 0.064 0.116
#> SRR1203125 1 0.7620 0.5985 0.532 0.176 0.036 0.084 0.040 0.132
#> SRR1203128 1 0.7404 0.6708 0.572 0.140 0.056 0.096 0.032 0.104
#> SRR1203129 1 0.7123 0.6835 0.600 0.108 0.020 0.100 0.076 0.096
#> SRR1203130 1 0.7873 0.6395 0.540 0.124 0.072 0.080 0.060 0.124
#> SRR1203132 3 0.3000 0.6900 0.000 0.000 0.824 0.016 0.156 0.004
#> SRR1203131 3 0.3053 0.6722 0.000 0.004 0.812 0.012 0.172 0.000
#> SRR1203133 1 0.5120 0.6895 0.744 0.108 0.016 0.016 0.040 0.076
#> SRR1203138 1 0.7460 0.6746 0.572 0.132 0.036 0.088 0.064 0.108
#> SRR1203760 1 0.7876 0.6236 0.504 0.152 0.028 0.108 0.048 0.160
#> SRR1203761 1 0.7956 0.4246 0.440 0.248 0.016 0.080 0.052 0.164
#> SRR1203770 1 0.7649 0.6616 0.540 0.124 0.040 0.092 0.044 0.160
#> SRR1203771 1 0.6686 0.6887 0.632 0.060 0.032 0.040 0.096 0.140
#> SRR1203772 1 0.7223 0.6718 0.596 0.132 0.064 0.056 0.048 0.104
#> SRR1203773 1 0.7304 0.6272 0.568 0.132 0.028 0.060 0.056 0.156
#> SRR1203774 1 0.7123 0.6114 0.540 0.188 0.012 0.036 0.052 0.172
#> SRR1203775 1 0.7401 0.6232 0.560 0.144 0.028 0.040 0.100 0.128
#> SRR1203800 1 0.7211 0.5225 0.476 0.280 0.008 0.052 0.028 0.156
#> SRR1203801 1 0.8021 0.6071 0.488 0.168 0.044 0.056 0.068 0.176
#> SRR1203802 1 0.7582 0.6202 0.512 0.208 0.048 0.044 0.036 0.152
#> SRR1203803 1 0.6593 0.6921 0.648 0.080 0.040 0.060 0.044 0.128
#> SRR1203804 1 0.7271 0.6515 0.556 0.116 0.020 0.104 0.032 0.172
#> SRR1203805 1 0.6338 0.6719 0.640 0.080 0.016 0.060 0.032 0.172
#> SRR1203806 1 0.6846 0.6703 0.608 0.136 0.020 0.056 0.048 0.132
#> SRR1203807 1 0.7466 0.5384 0.468 0.228 0.024 0.044 0.024 0.212
#> SRR1203808 1 0.7322 0.6690 0.560 0.176 0.028 0.052 0.060 0.124
#> SRR1203811 1 0.6929 0.6315 0.540 0.244 0.016 0.048 0.024 0.128
#> SRR1203812 1 0.7303 0.6574 0.580 0.120 0.048 0.044 0.064 0.144
#> SRR1203813 1 0.7195 0.6845 0.580 0.156 0.048 0.048 0.040 0.128
#> SRR1203814 1 0.6946 0.6907 0.596 0.168 0.028 0.044 0.052 0.112
#> SRR1203815 1 0.7842 0.6338 0.504 0.192 0.036 0.056 0.068 0.144
#> SRR1203816 1 0.5606 0.6692 0.696 0.108 0.004 0.048 0.024 0.120
#> SRR1203817 1 0.7942 0.6292 0.492 0.228 0.052 0.072 0.060 0.096
#> SRR1203818 1 0.7180 0.6807 0.584 0.120 0.024 0.120 0.040 0.112
#> SRR1203819 1 0.6746 0.6947 0.632 0.136 0.040 0.040 0.064 0.088
#> SRR1203822 1 0.8676 0.5276 0.444 0.156 0.084 0.088 0.076 0.152
#> SRR1203823 1 0.7687 0.6591 0.512 0.220 0.040 0.056 0.056 0.116
#> SRR1203824 1 0.6394 0.6673 0.616 0.128 0.004 0.064 0.024 0.164
#> SRR1203825 1 0.7510 0.6842 0.552 0.160 0.036 0.064 0.056 0.132
#> SRR1203826 1 0.7762 0.6219 0.536 0.100 0.044 0.112 0.052 0.156
#> SRR1203827 2 0.4376 -0.5131 0.128 0.776 0.000 0.020 0.048 0.028
#> SRR1203828 1 0.6307 0.6736 0.612 0.084 0.016 0.032 0.032 0.224
#> SRR1203829 1 0.6637 0.6937 0.644 0.112 0.024 0.068 0.060 0.092
#> SRR1203830 1 0.7758 0.6530 0.516 0.176 0.024 0.112 0.052 0.120
#> SRR1203831 1 0.7112 0.6712 0.580 0.140 0.024 0.056 0.048 0.152
#> SRR1203832 1 0.7640 0.6612 0.532 0.208 0.048 0.080 0.064 0.068
#> SRR1203833 1 0.6496 0.6652 0.624 0.132 0.008 0.060 0.036 0.140
#> SRR1203834 1 0.7811 0.6107 0.516 0.176 0.060 0.080 0.032 0.136
#> SRR1203835 1 0.7393 0.6813 0.584 0.112 0.036 0.076 0.092 0.100
#> SRR1203836 1 0.7923 0.6005 0.480 0.204 0.036 0.072 0.044 0.164
#> SRR1203837 1 0.6282 0.6795 0.648 0.108 0.008 0.056 0.040 0.140
#> SRR1203838 1 0.7831 0.6158 0.512 0.188 0.056 0.064 0.044 0.136
#> SRR1203839 1 0.6892 0.6924 0.604 0.128 0.024 0.068 0.036 0.140
#> SRR1203842 6 0.6494 0.0000 0.172 0.164 0.028 0.016 0.024 0.596
#> SRR1203843 1 0.7253 0.6355 0.564 0.116 0.024 0.068 0.048 0.180
#> SRR1203845 3 0.2290 0.7369 0.000 0.000 0.892 0.004 0.084 0.020
#> SRR1203844 3 0.2237 0.7419 0.000 0.000 0.896 0.004 0.080 0.020
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
sessionInfo()
#> R version 3.6.0 (2019-04-26)
#> Platform: x86_64-pc-linux-gnu (64-bit)
#> Running under: CentOS Linux 7 (Core)
#>
#> Matrix products: default
#> BLAS: /usr/lib64/libblas.so.3.4.2
#> LAPACK: /usr/lib64/liblapack.so.3.4.2
#>
#> locale:
#> [1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C LC_TIME=en_GB.UTF-8
#> [4] LC_COLLATE=en_GB.UTF-8 LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8
#> [7] LC_PAPER=en_GB.UTF-8 LC_NAME=C LC_ADDRESS=C
#> [10] LC_TELEPHONE=C LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
#>
#> attached base packages:
#> [1] grid stats graphics grDevices utils datasets methods base
#>
#> other attached packages:
#> [1] genefilter_1.66.0 ComplexHeatmap_2.3.1 markdown_1.1 knitr_1.26
#> [5] GetoptLong_0.1.7 cola_1.3.2
#>
#> loaded via a namespace (and not attached):
#> [1] circlize_0.4.8 shape_1.4.4 xfun_0.11 slam_0.1-46
#> [5] lattice_0.20-38 splines_3.6.0 colorspace_1.4-1 vctrs_0.2.0
#> [9] stats4_3.6.0 blob_1.2.0 XML_3.98-1.20 survival_2.44-1.1
#> [13] rlang_0.4.2 pillar_1.4.2 DBI_1.0.0 BiocGenerics_0.30.0
#> [17] bit64_0.9-7 RColorBrewer_1.1-2 matrixStats_0.55.0 stringr_1.4.0
#> [21] GlobalOptions_0.1.1 evaluate_0.14 memoise_1.1.0 Biobase_2.44.0
#> [25] IRanges_2.18.3 parallel_3.6.0 AnnotationDbi_1.46.1 highr_0.8
#> [29] Rcpp_1.0.3 xtable_1.8-4 backports_1.1.5 S4Vectors_0.22.1
#> [33] annotate_1.62.0 skmeans_0.2-11 bit_1.1-14 microbenchmark_1.4-7
#> [37] brew_1.0-6 impute_1.58.0 rjson_0.2.20 png_0.1-7
#> [41] digest_0.6.23 stringi_1.4.3 polyclip_1.10-0 clue_0.3-57
#> [45] tools_3.6.0 bitops_1.0-6 magrittr_1.5 eulerr_6.0.0
#> [49] RCurl_1.95-4.12 RSQLite_2.1.4 tibble_2.1.3 cluster_2.1.0
#> [53] crayon_1.3.4 pkgconfig_2.0.3 zeallot_0.1.0 Matrix_1.2-17
#> [57] xml2_1.2.2 httr_1.4.1 R6_2.4.1 mclust_5.4.5
#> [61] compiler_3.6.0