Date: 2019-12-26 00:27:21 CET, cola version: 1.3.2
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All available functions which can be applied to this res_list object:
res_list
#> A 'ConsensusPartitionList' object with 24 methods.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows are extracted by 'SD, CV, MAD, ATC' methods.
#> Subgroups are detected by 'hclust, kmeans, skmeans, pam, mclust, NMF' method.
#> Number of partitions are tried for k = 2, 3, 4, 5, 6.
#> Performed in total 30000 partitions by row resampling.
#>
#> Following methods can be applied to this 'ConsensusPartitionList' object:
#> [1] "cola_report" "collect_classes" "collect_plots" "collect_stats"
#> [5] "colnames" "functional_enrichment" "get_anno_col" "get_anno"
#> [9] "get_classes" "get_matrix" "get_membership" "get_stats"
#> [13] "is_best_k" "is_stable_k" "ncol" "nrow"
#> [17] "rownames" "show" "suggest_best_k" "test_to_known_factors"
#> [21] "top_rows_heatmap" "top_rows_overlap"
#>
#> You can get result for a single method by, e.g. object["SD", "hclust"] or object["SD:hclust"]
#> or a subset of methods by object[c("SD", "CV")], c("hclust", "kmeans")]
The call of run_all_consensus_partition_methods() was:
#> run_all_consensus_partition_methods(data = mat, mc.cores = 4)
Dimension of the input matrix:
mat = get_matrix(res_list)
dim(mat)
#> [1] 15395 400
The density distribution for each sample is visualized as in one column in the following heatmap. The clustering is based on the distance which is the Kolmogorov-Smirnov statistic between two distributions.
library(ComplexHeatmap)
densityHeatmap(mat, ylab = "value", cluster_columns = TRUE, show_column_names = FALSE,
mc.cores = 4)
Folowing table shows the best k (number of partitions) for each combination
of top-value methods and partition methods. Clicking on the method name in
the table goes to the section for a single combination of methods.
The cola vignette explains the definition of the metrics used for determining the best number of partitions.
suggest_best_k(res_list)
| The best k | 1-PAC | Mean silhouette | Concordance | Optional k | ||
|---|---|---|---|---|---|---|
| SD:hclust | 3 | 1.000 | 1.000 | 1.000 | ** | 2 |
| SD:NMF | 3 | 1.000 | 0.999 | 0.999 | ** | 2 |
| CV:hclust | 3 | 1.000 | 0.998 | 0.998 | ** | 2 |
| CV:kmeans | 2 | 1.000 | 1.000 | 1.000 | ** | |
| CV:pam | 3 | 1.000 | 0.987 | 0.987 | ** | 2 |
| MAD:hclust | 3 | 1.000 | 1.000 | 1.000 | ** | 2 |
| ATC:hclust | 2 | 1.000 | 1.000 | 1.000 | ** | |
| ATC:kmeans | 2 | 1.000 | 1.000 | 1.000 | ** | |
| ATC:skmeans | 2 | 1.000 | 1.000 | 1.000 | ** | |
| ATC:NMF | 2 | 1.000 | 1.000 | 1.000 | ** | |
| SD:mclust | 6 | 0.968 | 0.902 | 0.946 | ** | 2,3,4,5 |
| CV:mclust | 6 | 0.958 | 0.921 | 0.951 | ** | 2,5 |
| MAD:skmeans | 4 | 0.951 | 0.926 | 0.958 | ** | 2 |
| SD:skmeans | 4 | 0.943 | 0.947 | 0.963 | * | 2,3 |
| ATC:pam | 6 | 0.941 | 0.952 | 0.967 | * | 2,4,5 |
| MAD:pam | 5 | 0.933 | 0.933 | 0.946 | * | 2,3,4 |
| MAD:mclust | 6 | 0.931 | 0.886 | 0.930 | * | 2,4,5 |
| CV:skmeans | 4 | 0.931 | 0.926 | 0.949 | * | 2 |
| CV:NMF | 3 | 0.918 | 0.899 | 0.937 | * | 2 |
| ATC:mclust | 3 | 0.911 | 0.882 | 0.933 | * | |
| MAD:NMF | 4 | 0.909 | 0.940 | 0.960 | * | 2 |
| SD:pam | 6 | 0.907 | 0.912 | 0.918 | * | 2,3,4,5 |
| SD:kmeans | 2 | 0.509 | 0.971 | 0.942 | ||
| MAD:kmeans | 2 | 0.509 | 0.977 | 0.952 |
**: 1-PAC > 0.95, *: 1-PAC > 0.9
Cumulative distribution function curves of consensus matrix for all methods.
collect_plots(res_list, fun = plot_ecdf)
Consensus heatmaps for all methods. (What is a consensus heatmap?)
collect_plots(res_list, k = 2, fun = consensus_heatmap, mc.cores = 4)
collect_plots(res_list, k = 3, fun = consensus_heatmap, mc.cores = 4)
collect_plots(res_list, k = 4, fun = consensus_heatmap, mc.cores = 4)
collect_plots(res_list, k = 5, fun = consensus_heatmap, mc.cores = 4)
collect_plots(res_list, k = 6, fun = consensus_heatmap, mc.cores = 4)
Membership heatmaps for all methods. (What is a membership heatmap?)
collect_plots(res_list, k = 2, fun = membership_heatmap, mc.cores = 4)
collect_plots(res_list, k = 3, fun = membership_heatmap, mc.cores = 4)
collect_plots(res_list, k = 4, fun = membership_heatmap, mc.cores = 4)
collect_plots(res_list, k = 5, fun = membership_heatmap, mc.cores = 4)
collect_plots(res_list, k = 6, fun = membership_heatmap, mc.cores = 4)
Signature heatmaps for all methods. (What is a signature heatmap?)
Note in following heatmaps, rows are scaled.
collect_plots(res_list, k = 2, fun = get_signatures, mc.cores = 4)
collect_plots(res_list, k = 3, fun = get_signatures, mc.cores = 4)
collect_plots(res_list, k = 4, fun = get_signatures, mc.cores = 4)
collect_plots(res_list, k = 5, fun = get_signatures, mc.cores = 4)
collect_plots(res_list, k = 6, fun = get_signatures, mc.cores = 4)
The statistics used for measuring the stability of consensus partitioning. (How are they defined?)
get_stats(res_list, k = 2)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> SD:NMF 2 1.000 1.000 1.000 0.435 0.566 0.566
#> CV:NMF 2 1.000 1.000 1.000 0.435 0.566 0.566
#> MAD:NMF 2 1.000 1.000 1.000 0.435 0.566 0.566
#> ATC:NMF 2 1.000 1.000 1.000 0.435 0.566 0.566
#> SD:skmeans 2 1.000 1.000 1.000 0.435 0.566 0.566
#> CV:skmeans 2 1.000 1.000 1.000 0.435 0.566 0.566
#> MAD:skmeans 2 1.000 1.000 1.000 0.435 0.566 0.566
#> ATC:skmeans 2 1.000 1.000 1.000 0.435 0.566 0.566
#> SD:mclust 2 1.000 1.000 1.000 0.435 0.566 0.566
#> CV:mclust 2 1.000 0.998 0.999 0.436 0.566 0.566
#> MAD:mclust 2 1.000 1.000 1.000 0.435 0.566 0.566
#> ATC:mclust 2 0.804 0.890 0.949 0.465 0.509 0.509
#> SD:kmeans 2 0.509 0.971 0.942 0.403 0.566 0.566
#> CV:kmeans 2 1.000 1.000 1.000 0.435 0.566 0.566
#> MAD:kmeans 2 0.509 0.977 0.952 0.409 0.566 0.566
#> ATC:kmeans 2 1.000 1.000 1.000 0.435 0.566 0.566
#> SD:pam 2 1.000 1.000 1.000 0.435 0.566 0.566
#> CV:pam 2 1.000 1.000 1.000 0.435 0.566 0.566
#> MAD:pam 2 1.000 1.000 1.000 0.435 0.566 0.566
#> ATC:pam 2 1.000 1.000 1.000 0.435 0.566 0.566
#> SD:hclust 2 1.000 1.000 1.000 0.435 0.566 0.566
#> CV:hclust 2 1.000 1.000 1.000 0.435 0.566 0.566
#> MAD:hclust 2 1.000 1.000 1.000 0.435 0.566 0.566
#> ATC:hclust 2 1.000 1.000 1.000 0.435 0.566 0.566
get_stats(res_list, k = 3)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> SD:NMF 3 1.000 0.999 0.999 0.291 0.874 0.777
#> CV:NMF 3 0.918 0.899 0.937 0.505 0.775 0.602
#> MAD:NMF 3 0.886 0.910 0.958 0.418 0.805 0.655
#> ATC:NMF 3 0.761 0.830 0.913 0.309 0.865 0.761
#> SD:skmeans 3 1.000 0.983 0.988 0.306 0.874 0.777
#> CV:skmeans 3 0.779 0.946 0.941 0.484 0.768 0.591
#> MAD:skmeans 3 0.821 0.952 0.963 0.329 0.874 0.777
#> ATC:skmeans 3 0.797 0.949 0.949 0.325 0.874 0.777
#> SD:mclust 3 1.000 0.996 0.998 0.294 0.874 0.777
#> CV:mclust 3 0.884 0.931 0.967 0.340 0.874 0.777
#> MAD:mclust 3 0.684 0.887 0.908 0.362 0.874 0.777
#> ATC:mclust 3 0.911 0.882 0.933 0.288 0.847 0.708
#> SD:kmeans 3 0.824 0.961 0.926 0.327 0.874 0.777
#> CV:kmeans 3 0.634 0.695 0.832 0.339 0.874 0.777
#> MAD:kmeans 3 0.773 0.924 0.897 0.317 0.874 0.777
#> ATC:kmeans 3 0.673 0.868 0.838 0.259 0.876 0.781
#> SD:pam 3 1.000 0.999 0.999 0.289 0.874 0.777
#> CV:pam 3 1.000 0.987 0.987 0.300 0.874 0.777
#> MAD:pam 3 1.000 0.999 1.000 0.289 0.874 0.777
#> ATC:pam 3 0.765 0.834 0.885 0.378 0.876 0.781
#> SD:hclust 3 1.000 1.000 1.000 0.290 0.874 0.777
#> CV:hclust 3 1.000 0.998 0.998 0.292 0.874 0.777
#> MAD:hclust 3 1.000 1.000 1.000 0.290 0.874 0.777
#> ATC:hclust 3 0.874 0.820 0.948 0.141 0.990 0.982
get_stats(res_list, k = 4)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> SD:NMF 4 0.828 0.911 0.911 0.22041 0.842 0.639
#> CV:NMF 4 0.755 0.892 0.894 0.09677 0.827 0.564
#> MAD:NMF 4 0.909 0.940 0.960 0.16189 0.825 0.575
#> ATC:NMF 4 0.800 0.884 0.917 0.07027 0.993 0.984
#> SD:skmeans 4 0.943 0.947 0.963 0.25969 0.840 0.637
#> CV:skmeans 4 0.931 0.926 0.949 0.11854 0.869 0.649
#> MAD:skmeans 4 0.951 0.926 0.958 0.24290 0.836 0.627
#> ATC:skmeans 4 0.768 0.820 0.887 0.16565 0.936 0.855
#> SD:mclust 4 0.977 0.941 0.968 0.26230 0.840 0.637
#> CV:mclust 4 0.837 0.865 0.933 0.21381 0.842 0.639
#> MAD:mclust 4 0.989 0.966 0.982 0.21051 0.840 0.637
#> ATC:mclust 4 0.826 0.888 0.889 0.14896 0.902 0.747
#> SD:kmeans 4 0.578 0.826 0.832 0.19346 1.000 1.000
#> CV:kmeans 4 0.538 0.629 0.695 0.15739 1.000 1.000
#> MAD:kmeans 4 0.555 0.787 0.806 0.17230 1.000 1.000
#> ATC:kmeans 4 0.549 0.778 0.797 0.16607 1.000 1.000
#> SD:pam 4 0.918 0.948 0.969 0.28411 0.838 0.630
#> CV:pam 4 0.726 0.709 0.779 0.20557 0.846 0.649
#> MAD:pam 4 0.913 0.934 0.968 0.28184 0.838 0.632
#> ATC:pam 4 0.990 0.962 0.975 0.19948 0.832 0.622
#> SD:hclust 4 0.998 0.993 0.993 0.00808 0.998 0.996
#> CV:hclust 4 0.782 0.905 0.922 0.16127 0.877 0.720
#> MAD:hclust 4 0.835 0.946 0.946 0.05718 0.998 0.996
#> ATC:hclust 4 0.882 0.998 0.973 0.07360 0.882 0.788
get_stats(res_list, k = 5)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> SD:NMF 5 0.817 0.882 0.904 0.0698 0.978 0.924
#> CV:NMF 5 0.823 0.842 0.859 0.0659 1.000 1.000
#> MAD:NMF 5 0.883 0.765 0.899 0.0497 0.997 0.989
#> ATC:NMF 5 0.807 0.879 0.902 0.1551 0.836 0.624
#> SD:skmeans 5 0.845 0.884 0.896 0.0605 0.953 0.834
#> CV:skmeans 5 0.849 0.812 0.851 0.0559 0.965 0.881
#> MAD:skmeans 5 0.849 0.707 0.822 0.0611 0.951 0.823
#> ATC:skmeans 5 0.774 0.846 0.855 0.0925 0.834 0.578
#> SD:mclust 5 0.955 0.881 0.950 0.0796 0.937 0.780
#> CV:mclust 5 0.901 0.949 0.942 0.0852 0.908 0.691
#> MAD:mclust 5 0.922 0.943 0.958 0.0698 0.929 0.755
#> ATC:mclust 5 0.739 0.867 0.822 0.0634 0.983 0.941
#> SD:kmeans 5 0.655 0.722 0.730 0.1022 0.842 0.639
#> CV:kmeans 5 0.584 0.578 0.747 0.0752 0.818 0.585
#> MAD:kmeans 5 0.625 0.728 0.728 0.1128 0.840 0.637
#> ATC:kmeans 5 0.589 0.462 0.719 0.1026 0.931 0.844
#> SD:pam 5 0.917 0.946 0.974 0.0727 0.950 0.818
#> CV:pam 5 0.798 0.815 0.902 0.0830 0.836 0.518
#> MAD:pam 5 0.933 0.933 0.946 0.0465 0.966 0.880
#> ATC:pam 5 0.914 0.939 0.943 0.0577 0.962 0.863
#> SD:hclust 5 0.949 0.969 0.973 0.0272 0.998 0.996
#> CV:hclust 5 0.819 0.870 0.934 0.0531 0.998 0.995
#> MAD:hclust 5 0.757 0.824 0.863 0.0942 1.000 1.000
#> ATC:hclust 5 1.000 0.998 1.000 0.0584 0.998 0.996
get_stats(res_list, k = 6)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> SD:NMF 6 0.845 0.723 0.814 0.05558 0.982 0.936
#> CV:NMF 6 0.789 0.779 0.830 0.04982 0.896 0.634
#> MAD:NMF 6 0.823 0.827 0.854 0.03641 0.953 0.828
#> ATC:NMF 6 0.762 0.793 0.817 0.06746 0.917 0.714
#> SD:skmeans 6 0.799 0.824 0.840 0.04251 0.974 0.888
#> CV:skmeans 6 0.795 0.676 0.758 0.03993 0.909 0.677
#> MAD:skmeans 6 0.857 0.753 0.806 0.03685 0.942 0.768
#> ATC:skmeans 6 0.811 0.825 0.818 0.05377 0.955 0.823
#> SD:mclust 6 0.968 0.902 0.946 0.03861 0.953 0.803
#> CV:mclust 6 0.958 0.921 0.951 0.03516 0.956 0.816
#> MAD:mclust 6 0.931 0.886 0.930 0.03831 0.966 0.852
#> ATC:mclust 6 0.737 0.779 0.828 0.05274 0.975 0.911
#> SD:kmeans 6 0.632 0.450 0.666 0.06015 0.963 0.868
#> CV:kmeans 6 0.601 0.563 0.719 0.05641 0.980 0.924
#> MAD:kmeans 6 0.606 0.539 0.689 0.06938 0.913 0.721
#> ATC:kmeans 6 0.601 0.703 0.689 0.05415 0.836 0.581
#> SD:pam 6 0.907 0.912 0.918 0.04302 0.969 0.862
#> CV:pam 6 0.809 0.836 0.868 0.07259 0.972 0.878
#> MAD:pam 6 0.842 0.896 0.909 0.04683 0.969 0.873
#> ATC:pam 6 0.941 0.952 0.967 0.06055 0.950 0.792
#> SD:hclust 6 0.750 0.485 0.785 0.19637 0.936 0.853
#> CV:hclust 6 0.775 0.774 0.863 0.06673 0.948 0.835
#> MAD:hclust 6 0.749 0.899 0.836 0.12969 0.785 0.509
#> ATC:hclust 6 1.000 0.996 0.999 0.00888 0.995 0.989
Following heatmap plots the partition for each combination of methods and the lightness correspond to the silhouette scores for samples in each method. On top the consensus subgroup is inferred from all methods by taking the mean silhouette scores as weight.
collect_stats(res_list, k = 2)
collect_stats(res_list, k = 3)
collect_stats(res_list, k = 4)
collect_stats(res_list, k = 5)
collect_stats(res_list, k = 6)
Collect partitions from all methods:
collect_classes(res_list, k = 2)
collect_classes(res_list, k = 3)
collect_classes(res_list, k = 4)
collect_classes(res_list, k = 5)
collect_classes(res_list, k = 6)
Overlap of top rows from different top-row methods:
top_rows_overlap(res_list, top_n = 1000, method = "euler")
top_rows_overlap(res_list, top_n = 2000, method = "euler")
top_rows_overlap(res_list, top_n = 3000, method = "euler")
top_rows_overlap(res_list, top_n = 4000, method = "euler")
top_rows_overlap(res_list, top_n = 5000, method = "euler")
Also visualize the correspondance of rankings between different top-row methods:
top_rows_overlap(res_list, top_n = 1000, method = "correspondance")
top_rows_overlap(res_list, top_n = 2000, method = "correspondance")
top_rows_overlap(res_list, top_n = 3000, method = "correspondance")
top_rows_overlap(res_list, top_n = 4000, method = "correspondance")
top_rows_overlap(res_list, top_n = 5000, method = "correspondance")
Heatmaps of the top rows:
top_rows_heatmap(res_list, top_n = 1000)
top_rows_heatmap(res_list, top_n = 2000)
top_rows_heatmap(res_list, top_n = 3000)
top_rows_heatmap(res_list, top_n = 4000)
top_rows_heatmap(res_list, top_n = 5000)
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["SD", "hclust"]
# you can also extract it by
# res = res_list["SD:hclust"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'SD' method.
#> Subgroups are detected by 'hclust' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 3.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.43504 0.566 0.566
#> 3 3 1.000 1.000 1.000 0.28995 0.874 0.777
#> 4 4 0.998 0.993 0.993 0.00808 0.998 0.996
#> 5 5 0.949 0.969 0.973 0.02725 0.998 0.996
#> 6 6 0.750 0.485 0.785 0.19637 0.936 0.853
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 3
#> attr(,"optional")
#> [1] 2
There is also optional best \(k\) = 2 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0 1 1 0 0
#> SRR1643168 1 0 1 1 0 0
#> SRR1643169 1 0 1 1 0 0
#> SRR1643170 1 0 1 1 0 0
#> SRR1643171 1 0 1 1 0 0
#> SRR1643172 1 0 1 1 0 0
#> SRR1643173 1 0 1 1 0 0
#> SRR1643174 1 0 1 1 0 0
#> SRR1643175 1 0 1 1 0 0
#> SRR1643176 1 0 1 1 0 0
#> SRR1643177 1 0 1 1 0 0
#> SRR1643178 1 0 1 1 0 0
#> SRR1643180 1 0 1 1 0 0
#> SRR1643181 1 0 1 1 0 0
#> SRR1643182 1 0 1 1 0 0
#> SRR1643183 1 0 1 1 0 0
#> SRR1643184 1 0 1 1 0 0
#> SRR1643185 1 0 1 1 0 0
#> SRR1643186 1 0 1 1 0 0
#> SRR1643187 1 0 1 1 0 0
#> SRR1643188 1 0 1 1 0 0
#> SRR1643189 1 0 1 1 0 0
#> SRR1643190 1 0 1 1 0 0
#> SRR1643191 1 0 1 1 0 0
#> SRR1643192 1 0 1 1 0 0
#> SRR1643193 1 0 1 1 0 0
#> SRR1643194 1 0 1 1 0 0
#> SRR1643195 1 0 1 1 0 0
#> SRR1643196 1 0 1 1 0 0
#> SRR1643197 1 0 1 1 0 0
#> SRR1643198 1 0 1 1 0 0
#> SRR1643199 1 0 1 1 0 0
#> SRR1643200 1 0 1 1 0 0
#> SRR1643201 1 0 1 1 0 0
#> SRR1643202 1 0 1 1 0 0
#> SRR1643203 1 0 1 1 0 0
#> SRR1643204 1 0 1 1 0 0
#> SRR1643205 3 0 1 0 0 1
#> SRR1643206 3 0 1 0 0 1
#> SRR1643207 3 0 1 0 0 1
#> SRR1643208 3 0 1 0 0 1
#> SRR1643209 3 0 1 0 0 1
#> SRR1643210 3 0 1 0 0 1
#> SRR1643211 3 0 1 0 0 1
#> SRR1643212 3 0 1 0 0 1
#> SRR1643213 3 0 1 0 0 1
#> SRR1643214 3 0 1 0 0 1
#> SRR1643215 3 0 1 0 0 1
#> SRR1643216 3 0 1 0 0 1
#> SRR1643217 3 0 1 0 0 1
#> SRR1643218 3 0 1 0 0 1
#> SRR1643219 3 0 1 0 0 1
#> SRR1643220 3 0 1 0 0 1
#> SRR1643221 3 0 1 0 0 1
#> SRR1643222 3 0 1 0 0 1
#> SRR1643223 3 0 1 0 0 1
#> SRR1643224 3 0 1 0 0 1
#> SRR1643225 3 0 1 0 0 1
#> SRR1643226 3 0 1 0 0 1
#> SRR1643227 3 0 1 0 0 1
#> SRR1643228 3 0 1 0 0 1
#> SRR1643229 3 0 1 0 0 1
#> SRR1643230 3 0 1 0 0 1
#> SRR1643231 3 0 1 0 0 1
#> SRR1643232 3 0 1 0 0 1
#> SRR1643233 3 0 1 0 0 1
#> SRR1643234 3 0 1 0 0 1
#> SRR1643235 3 0 1 0 0 1
#> SRR1643236 3 0 1 0 0 1
#> SRR1643237 3 0 1 0 0 1
#> SRR1643238 3 0 1 0 0 1
#> SRR1643239 3 0 1 0 0 1
#> SRR1643240 3 0 1 0 0 1
#> SRR1643241 3 0 1 0 0 1
#> SRR1643242 3 0 1 0 0 1
#> SRR1643243 3 0 1 0 0 1
#> SRR1643245 3 0 1 0 0 1
#> SRR1643246 3 0 1 0 0 1
#> SRR1643247 3 0 1 0 0 1
#> SRR1643248 3 0 1 0 0 1
#> SRR1643249 3 0 1 0 0 1
#> SRR1643250 1 0 1 1 0 0
#> SRR1643251 1 0 1 1 0 0
#> SRR1643252 1 0 1 1 0 0
#> SRR1643253 1 0 1 1 0 0
#> SRR1643254 1 0 1 1 0 0
#> SRR1643255 1 0 1 1 0 0
#> SRR1643256 1 0 1 1 0 0
#> SRR1643257 1 0 1 1 0 0
#> SRR1643258 1 0 1 1 0 0
#> SRR1643259 1 0 1 1 0 0
#> SRR1643260 1 0 1 1 0 0
#> SRR1643261 1 0 1 1 0 0
#> SRR1643262 1 0 1 1 0 0
#> SRR1643263 1 0 1 1 0 0
#> SRR1643264 1 0 1 1 0 0
#> SRR1643266 1 0 1 1 0 0
#> SRR1643267 1 0 1 1 0 0
#> SRR1643268 1 0 1 1 0 0
#> SRR1643269 1 0 1 1 0 0
#> SRR1643270 1 0 1 1 0 0
#> SRR1643271 1 0 1 1 0 0
#> SRR1643272 1 0 1 1 0 0
#> SRR1643273 1 0 1 1 0 0
#> SRR1643274 1 0 1 1 0 0
#> SRR1643275 1 0 1 1 0 0
#> SRR1643276 1 0 1 1 0 0
#> SRR1643277 1 0 1 1 0 0
#> SRR1643278 1 0 1 1 0 0
#> SRR1643279 1 0 1 1 0 0
#> SRR1643280 1 0 1 1 0 0
#> SRR1643281 1 0 1 1 0 0
#> SRR1643282 1 0 1 1 0 0
#> SRR1643283 1 0 1 1 0 0
#> SRR1643284 1 0 1 1 0 0
#> SRR1643285 1 0 1 1 0 0
#> SRR1643286 1 0 1 1 0 0
#> SRR1643287 1 0 1 1 0 0
#> SRR1643288 1 0 1 1 0 0
#> SRR1643289 1 0 1 1 0 0
#> SRR1643290 1 0 1 1 0 0
#> SRR1643291 1 0 1 1 0 0
#> SRR1643292 1 0 1 1 0 0
#> SRR1643293 1 0 1 1 0 0
#> SRR1643294 1 0 1 1 0 0
#> SRR1643295 1 0 1 1 0 0
#> SRR1643296 1 0 1 1 0 0
#> SRR1643297 1 0 1 1 0 0
#> SRR1643298 1 0 1 1 0 0
#> SRR1643299 1 0 1 1 0 0
#> SRR1643300 1 0 1 1 0 0
#> SRR1643301 1 0 1 1 0 0
#> SRR1643302 1 0 1 1 0 0
#> SRR1643303 1 0 1 1 0 0
#> SRR1643304 1 0 1 1 0 0
#> SRR1643305 1 0 1 1 0 0
#> SRR1643306 1 0 1 1 0 0
#> SRR1643307 1 0 1 1 0 0
#> SRR1643308 1 0 1 1 0 0
#> SRR1643309 1 0 1 1 0 0
#> SRR1643310 1 0 1 1 0 0
#> SRR1643311 1 0 1 1 0 0
#> SRR1643312 1 0 1 1 0 0
#> SRR1643313 1 0 1 1 0 0
#> SRR1643314 1 0 1 1 0 0
#> SRR1643315 1 0 1 1 0 0
#> SRR1643316 1 0 1 1 0 0
#> SRR1643317 1 0 1 1 0 0
#> SRR1643318 1 0 1 1 0 0
#> SRR1643319 1 0 1 1 0 0
#> SRR1643320 1 0 1 1 0 0
#> SRR1643321 1 0 1 1 0 0
#> SRR1643322 1 0 1 1 0 0
#> SRR1643323 1 0 1 1 0 0
#> SRR1643324 1 0 1 1 0 0
#> SRR1643325 1 0 1 1 0 0
#> SRR1643326 1 0 1 1 0 0
#> SRR1643327 1 0 1 1 0 0
#> SRR1643328 1 0 1 1 0 0
#> SRR1643329 1 0 1 1 0 0
#> SRR1643330 1 0 1 1 0 0
#> SRR1643331 1 0 1 1 0 0
#> SRR1643332 1 0 1 1 0 0
#> SRR1643333 1 0 1 1 0 0
#> SRR1643334 1 0 1 1 0 0
#> SRR1643335 1 0 1 1 0 0
#> SRR1643336 1 0 1 1 0 0
#> SRR1643337 1 0 1 1 0 0
#> SRR1643338 1 0 1 1 0 0
#> SRR1643339 1 0 1 1 0 0
#> SRR1643340 1 0 1 1 0 0
#> SRR1643341 1 0 1 1 0 0
#> SRR1643342 1 0 1 1 0 0
#> SRR1643343 1 0 1 1 0 0
#> SRR1643344 1 0 1 1 0 0
#> SRR1643345 1 0 1 1 0 0
#> SRR1643346 1 0 1 1 0 0
#> SRR1643347 1 0 1 1 0 0
#> SRR1643348 1 0 1 1 0 0
#> SRR1643349 1 0 1 1 0 0
#> SRR1643350 1 0 1 1 0 0
#> SRR1643351 1 0 1 1 0 0
#> SRR1643352 1 0 1 1 0 0
#> SRR1643353 1 0 1 1 0 0
#> SRR1643354 1 0 1 1 0 0
#> SRR1643355 1 0 1 1 0 0
#> SRR1643356 1 0 1 1 0 0
#> SRR1643357 1 0 1 1 0 0
#> SRR1643358 1 0 1 1 0 0
#> SRR1643359 1 0 1 1 0 0
#> SRR1643360 1 0 1 1 0 0
#> SRR1643361 1 0 1 1 0 0
#> SRR1643362 1 0 1 1 0 0
#> SRR1643363 1 0 1 1 0 0
#> SRR1643364 1 0 1 1 0 0
#> SRR1643365 1 0 1 1 0 0
#> SRR1643366 1 0 1 1 0 0
#> SRR1643367 1 0 1 1 0 0
#> SRR1643368 1 0 1 1 0 0
#> SRR1643369 1 0 1 1 0 0
#> SRR1643370 1 0 1 1 0 0
#> SRR1643371 1 0 1 1 0 0
#> SRR1643372 1 0 1 1 0 0
#> SRR1643373 1 0 1 1 0 0
#> SRR1643374 1 0 1 1 0 0
#> SRR1643375 1 0 1 1 0 0
#> SRR1643376 1 0 1 1 0 0
#> SRR1643377 1 0 1 1 0 0
#> SRR1643378 1 0 1 1 0 0
#> SRR1643379 1 0 1 1 0 0
#> SRR1643380 1 0 1 1 0 0
#> SRR1643381 1 0 1 1 0 0
#> SRR1643382 1 0 1 1 0 0
#> SRR1643383 1 0 1 1 0 0
#> SRR1643384 1 0 1 1 0 0
#> SRR1643385 1 0 1 1 0 0
#> SRR1643386 1 0 1 1 0 0
#> SRR1643387 1 0 1 1 0 0
#> SRR1643388 1 0 1 1 0 0
#> SRR1643389 1 0 1 1 0 0
#> SRR1643390 1 0 1 1 0 0
#> SRR1643391 1 0 1 1 0 0
#> SRR1643392 1 0 1 1 0 0
#> SRR1643393 1 0 1 1 0 0
#> SRR1643394 1 0 1 1 0 0
#> SRR1643395 1 0 1 1 0 0
#> SRR1643396 1 0 1 1 0 0
#> SRR1643397 1 0 1 1 0 0
#> SRR1643398 1 0 1 1 0 0
#> SRR1643399 1 0 1 1 0 0
#> SRR1643400 1 0 1 1 0 0
#> SRR1643401 1 0 1 1 0 0
#> SRR1643402 1 0 1 1 0 0
#> SRR1643403 1 0 1 1 0 0
#> SRR1643404 1 0 1 1 0 0
#> SRR1643405 1 0 1 1 0 0
#> SRR1643406 1 0 1 1 0 0
#> SRR1643407 1 0 1 1 0 0
#> SRR1643408 1 0 1 1 0 0
#> SRR1643409 1 0 1 1 0 0
#> SRR1643410 1 0 1 1 0 0
#> SRR1643411 1 0 1 1 0 0
#> SRR1643412 1 0 1 1 0 0
#> SRR1643413 1 0 1 1 0 0
#> SRR1643414 1 0 1 1 0 0
#> SRR1643415 1 0 1 1 0 0
#> SRR1643416 1 0 1 1 0 0
#> SRR1643417 1 0 1 1 0 0
#> SRR1643418 1 0 1 1 0 0
#> SRR1643419 1 0 1 1 0 0
#> SRR1643420 1 0 1 1 0 0
#> SRR1643421 1 0 1 1 0 0
#> SRR1643422 1 0 1 1 0 0
#> SRR1643423 1 0 1 1 0 0
#> SRR1643424 1 0 1 1 0 0
#> SRR1643425 1 0 1 1 0 0
#> SRR1643426 1 0 1 1 0 0
#> SRR1643427 1 0 1 1 0 0
#> SRR1643428 1 0 1 1 0 0
#> SRR1643429 1 0 1 1 0 0
#> SRR1643430 1 0 1 1 0 0
#> SRR1643431 1 0 1 1 0 0
#> SRR1643432 1 0 1 1 0 0
#> SRR1643433 1 0 1 1 0 0
#> SRR1643434 1 0 1 1 0 0
#> SRR1643435 1 0 1 1 0 0
#> SRR1643436 1 0 1 1 0 0
#> SRR1643437 1 0 1 1 0 0
#> SRR1643438 1 0 1 1 0 0
#> SRR1643439 1 0 1 1 0 0
#> SRR1643440 1 0 1 1 0 0
#> SRR1643441 1 0 1 1 0 0
#> SRR1643442 1 0 1 1 0 0
#> SRR1643443 2 0 1 0 1 0
#> SRR1643444 2 0 1 0 1 0
#> SRR1643445 2 0 1 0 1 0
#> SRR1643446 2 0 1 0 1 0
#> SRR1643447 2 0 1 0 1 0
#> SRR1643448 2 0 1 0 1 0
#> SRR1643449 2 0 1 0 1 0
#> SRR1643450 2 0 1 0 1 0
#> SRR1643451 2 0 1 0 1 0
#> SRR1643452 2 0 1 0 1 0
#> SRR1643453 2 0 1 0 1 0
#> SRR1643454 2 0 1 0 1 0
#> SRR1643455 2 0 1 0 1 0
#> SRR1643456 2 0 1 0 1 0
#> SRR1643457 2 0 1 0 1 0
#> SRR1643458 2 0 1 0 1 0
#> SRR1643459 2 0 1 0 1 0
#> SRR1643460 2 0 1 0 1 0
#> SRR1643461 2 0 1 0 1 0
#> SRR1643462 2 0 1 0 1 0
#> SRR1643463 2 0 1 0 1 0
#> SRR1643464 2 0 1 0 1 0
#> SRR1643466 2 0 1 0 1 0
#> SRR1643467 2 0 1 0 1 0
#> SRR1643468 2 0 1 0 1 0
#> SRR1643469 2 0 1 0 1 0
#> SRR1643470 2 0 1 0 1 0
#> SRR1643471 2 0 1 0 1 0
#> SRR1643472 2 0 1 0 1 0
#> SRR1643473 2 0 1 0 1 0
#> SRR1643474 2 0 1 0 1 0
#> SRR1643475 2 0 1 0 1 0
#> SRR1643477 2 0 1 0 1 0
#> SRR1643478 2 0 1 0 1 0
#> SRR1643479 2 0 1 0 1 0
#> SRR1643480 2 0 1 0 1 0
#> SRR1643481 2 0 1 0 1 0
#> SRR1643482 2 0 1 0 1 0
#> SRR1643483 2 0 1 0 1 0
#> SRR1643484 2 0 1 0 1 0
#> SRR1643485 2 0 1 0 1 0
#> SRR1643486 2 0 1 0 1 0
#> SRR1643487 2 0 1 0 1 0
#> SRR1643488 2 0 1 0 1 0
#> SRR1643489 2 0 1 0 1 0
#> SRR1643490 2 0 1 0 1 0
#> SRR1643491 2 0 1 0 1 0
#> SRR1643492 2 0 1 0 1 0
#> SRR1643493 2 0 1 0 1 0
#> SRR1643494 2 0 1 0 1 0
#> SRR1643495 2 0 1 0 1 0
#> SRR1643496 2 0 1 0 1 0
#> SRR1643497 2 0 1 0 1 0
#> SRR1643498 2 0 1 0 1 0
#> SRR1643499 2 0 1 0 1 0
#> SRR1643500 2 0 1 0 1 0
#> SRR1643501 2 0 1 0 1 0
#> SRR1643502 2 0 1 0 1 0
#> SRR1643503 2 0 1 0 1 0
#> SRR1643504 2 0 1 0 1 0
#> SRR1643505 2 0 1 0 1 0
#> SRR1643506 2 0 1 0 1 0
#> SRR1643507 2 0 1 0 1 0
#> SRR1643508 2 0 1 0 1 0
#> SRR1643509 2 0 1 0 1 0
#> SRR1643510 2 0 1 0 1 0
#> SRR1643511 2 0 1 0 1 0
#> SRR1643512 2 0 1 0 1 0
#> SRR1643513 2 0 1 0 1 0
#> SRR1643531 2 0 1 0 1 0
#> SRR1643532 2 0 1 0 1 0
#> SRR1643533 2 0 1 0 1 0
#> SRR1643534 2 0 1 0 1 0
#> SRR1643535 2 0 1 0 1 0
#> SRR1643536 2 0 1 0 1 0
#> SRR1643537 2 0 1 0 1 0
#> SRR1643538 2 0 1 0 1 0
#> SRR1643539 2 0 1 0 1 0
#> SRR1643540 2 0 1 0 1 0
#> SRR1643541 2 0 1 0 1 0
#> SRR1643542 2 0 1 0 1 0
#> SRR1643543 2 0 1 0 1 0
#> SRR1643544 2 0 1 0 1 0
#> SRR1643514 2 0 1 0 1 0
#> SRR1643515 2 0 1 0 1 0
#> SRR1643516 2 0 1 0 1 0
#> SRR1643517 2 0 1 0 1 0
#> SRR1643518 2 0 1 0 1 0
#> SRR1643519 2 0 1 0 1 0
#> SRR1643520 2 0 1 0 1 0
#> SRR1643521 2 0 1 0 1 0
#> SRR1643522 2 0 1 0 1 0
#> SRR1643523 2 0 1 0 1 0
#> SRR1643524 2 0 1 0 1 0
#> SRR1643525 2 0 1 0 1 0
#> SRR1643526 2 0 1 0 1 0
#> SRR1643527 2 0 1 0 1 0
#> SRR1643528 2 0 1 0 1 0
#> SRR1643529 2 0 1 0 1 0
#> SRR1643530 2 0 1 0 1 0
#> SRR1643545 2 0 1 0 1 0
#> SRR1643546 2 0 1 0 1 0
#> SRR1643547 2 0 1 0 1 0
#> SRR1643548 2 0 1 0 1 0
#> SRR1643549 2 0 1 0 1 0
#> SRR1643550 2 0 1 0 1 0
#> SRR1643551 2 0 1 0 1 0
#> SRR1643552 2 0 1 0 1 0
#> SRR1643553 2 0 1 0 1 0
#> SRR1643554 2 0 1 0 1 0
#> SRR1643555 2 0 1 0 1 0
#> SRR1643556 2 0 1 0 1 0
#> SRR1643558 2 0 1 0 1 0
#> SRR1643559 2 0 1 0 1 0
#> SRR1643560 2 0 1 0 1 0
#> SRR1643561 2 0 1 0 1 0
#> SRR1643562 2 0 1 0 1 0
#> SRR1643563 2 0 1 0 1 0
#> SRR1643564 2 0 1 0 1 0
#> SRR1643565 2 0 1 0 1 0
#> SRR1643566 2 0 1 0 1 0
#> SRR1643567 2 0 1 0 1 0
#> SRR1643568 2 0 1 0 1 0
#> SRR1643569 2 0 1 0 1 0
#> SRR1643570 2 0 1 0 1 0
#> SRR1643571 2 0 1 0 1 0
#> SRR1643572 2 0 1 0 1 0
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643168 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643169 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643170 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643171 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643172 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643173 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643174 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643175 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643176 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643177 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643178 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643180 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643181 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643182 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643183 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643184 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643185 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643186 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643187 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643188 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643189 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643190 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643191 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643192 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643193 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643194 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643195 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643196 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643197 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643198 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643199 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643200 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643201 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643202 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643203 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643204 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643205 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643206 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643207 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643208 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643209 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643210 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643211 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643212 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643213 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643214 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643215 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643216 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643217 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643218 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643219 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643220 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643221 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643222 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643223 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643224 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643225 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643226 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643227 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643228 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643229 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643230 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643231 4 0.4103 1.000 0.000 0.000 0.256 0.744
#> SRR1643232 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643233 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643234 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643235 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643236 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643237 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643238 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643239 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643240 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643241 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643242 4 0.4103 1.000 0.000 0.000 0.256 0.744
#> SRR1643243 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643245 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643246 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643247 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643248 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643249 4 0.4103 1.000 0.000 0.000 0.256 0.744
#> SRR1643250 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643251 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643252 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643253 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643254 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643255 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643256 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643257 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643258 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643259 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643260 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643261 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643262 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643263 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643264 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643266 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643267 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643268 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643269 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643270 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643271 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643272 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643273 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643274 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643275 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643276 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643277 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643278 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643279 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643280 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643281 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643282 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643283 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643284 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643285 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643286 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643287 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643288 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643289 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643290 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643291 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643292 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643293 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643294 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643295 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643296 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643297 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643298 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643299 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643300 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643301 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643302 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643303 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643304 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643305 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643306 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643307 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643308 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643309 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643310 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643311 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643312 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643313 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643314 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643315 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643316 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643317 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643318 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643319 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643320 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643321 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643322 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643323 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643324 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643325 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643326 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643327 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643328 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643329 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643330 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643331 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643332 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643333 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643334 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643335 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643336 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643337 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643338 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643339 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643340 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643341 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643342 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643343 1 0.0469 0.990 0.988 0.000 0.000 0.012
#> SRR1643344 1 0.0469 0.990 0.988 0.000 0.000 0.012
#> SRR1643345 1 0.0469 0.990 0.988 0.000 0.000 0.012
#> SRR1643346 1 0.0469 0.990 0.988 0.000 0.000 0.012
#> SRR1643347 1 0.0469 0.990 0.988 0.000 0.000 0.012
#> SRR1643348 1 0.0469 0.990 0.988 0.000 0.000 0.012
#> SRR1643349 1 0.0469 0.990 0.988 0.000 0.000 0.012
#> SRR1643350 1 0.0469 0.990 0.988 0.000 0.000 0.012
#> SRR1643351 1 0.0469 0.990 0.988 0.000 0.000 0.012
#> SRR1643352 1 0.0469 0.990 0.988 0.000 0.000 0.012
#> SRR1643353 1 0.0469 0.990 0.988 0.000 0.000 0.012
#> SRR1643354 1 0.0469 0.990 0.988 0.000 0.000 0.012
#> SRR1643355 1 0.0469 0.990 0.988 0.000 0.000 0.012
#> SRR1643356 1 0.0469 0.990 0.988 0.000 0.000 0.012
#> SRR1643357 1 0.0469 0.990 0.988 0.000 0.000 0.012
#> SRR1643358 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643359 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643360 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643361 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643362 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643363 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643364 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643365 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643366 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643367 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643368 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643369 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643370 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643371 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643372 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643373 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643374 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643375 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643376 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643377 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643378 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643379 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643380 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643381 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643382 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643383 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643384 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643385 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643386 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643387 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643388 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643389 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643390 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643391 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643392 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643393 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643394 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643395 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643396 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643397 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643398 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643399 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643400 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643401 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643402 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643403 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643404 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643405 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643406 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643407 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643408 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643409 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643410 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643411 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643412 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643413 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643414 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643415 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643416 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643417 1 0.0592 0.990 0.984 0.000 0.000 0.016
#> SRR1643418 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643419 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643420 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643421 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643422 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643423 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643424 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643425 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643426 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643427 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643428 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643429 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643430 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643431 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643432 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643433 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643434 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643435 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643436 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643437 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643438 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643439 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643440 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643441 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643442 1 0.0188 0.992 0.996 0.000 0.000 0.004
#> SRR1643443 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643444 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643445 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643446 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643447 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643448 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643449 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643450 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643451 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643452 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643453 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643454 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643455 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643456 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643457 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643458 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643459 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643460 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643461 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643462 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643463 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643464 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643466 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643467 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643468 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643469 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643470 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643471 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643472 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643473 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643474 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643475 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643477 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643478 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643479 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643480 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643481 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643482 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643483 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643484 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643485 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643486 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643487 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643488 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643489 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643490 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643491 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643492 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643493 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643494 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643495 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643496 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643497 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643498 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643499 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643500 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643501 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643502 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643503 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643504 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643505 2 0.3942 0.703 0.000 0.764 0.000 0.236
#> SRR1643506 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643507 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643508 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643509 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643510 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643511 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643512 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643513 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643531 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643532 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643533 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643534 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643535 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643536 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643537 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643538 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643539 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643540 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643541 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643542 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643543 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643544 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643514 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643515 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643516 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643517 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643518 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643519 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643520 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643521 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643522 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643523 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643524 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643525 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643526 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643527 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643528 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643529 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643530 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643545 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643546 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643547 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643548 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643549 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643550 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643551 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643552 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643553 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643554 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643555 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643556 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643558 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643559 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643560 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643561 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643562 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643563 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643564 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643565 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643566 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643567 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643568 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643569 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643570 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643571 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643572 2 0.0000 0.998 0.000 1.000 0.000 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643168 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643169 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643170 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643171 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643172 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643173 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643174 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643175 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643176 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643177 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643178 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643180 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643181 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643182 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643183 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643184 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643185 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643186 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643187 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643188 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643189 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643190 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643191 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643192 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643193 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643194 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643195 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643196 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643197 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643198 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643199 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643200 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643201 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643202 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643203 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643204 1 0.2230 0.935 0.884 0 0.000 0 0.116
#> SRR1643205 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643206 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643207 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643208 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643209 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643210 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643211 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643212 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643213 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643214 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643215 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643216 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643217 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643218 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643219 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643220 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643221 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643222 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643223 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643224 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643225 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643226 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643227 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643228 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643229 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643230 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643231 5 0.2230 1.000 0.000 0 0.116 0 0.884
#> SRR1643232 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643233 3 0.0703 0.973 0.000 0 0.976 0 0.024
#> SRR1643234 3 0.0703 0.973 0.000 0 0.976 0 0.024
#> SRR1643235 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643236 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643237 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643238 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643239 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643240 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643241 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643242 5 0.2230 1.000 0.000 0 0.116 0 0.884
#> SRR1643243 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643245 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643246 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643247 3 0.0000 0.998 0.000 0 1.000 0 0.000
#> SRR1643248 3 0.0703 0.973 0.000 0 0.976 0 0.024
#> SRR1643249 5 0.2230 1.000 0.000 0 0.116 0 0.884
#> SRR1643250 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643251 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643252 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643253 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643254 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643255 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643256 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643257 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643258 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643259 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643260 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643261 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643262 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643263 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643264 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643266 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643267 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643268 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643269 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643270 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643271 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643272 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643273 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643274 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643275 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643276 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643277 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643278 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643279 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643280 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643281 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643282 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643283 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643284 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643285 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643286 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643287 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643288 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643289 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643290 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643291 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643292 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643293 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643294 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643295 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643296 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643297 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643298 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643299 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643300 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643301 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643302 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643303 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643304 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643305 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643306 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643307 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643308 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643309 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643310 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643311 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643312 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643313 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643314 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643315 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643316 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643317 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643318 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643319 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643320 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643321 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643322 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643323 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643324 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643325 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643326 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643327 1 0.1121 0.956 0.956 0 0.000 0 0.044
#> SRR1643328 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643329 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643330 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643331 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643332 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643333 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643334 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643335 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643336 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643337 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643338 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643339 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643340 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643341 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643342 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643343 1 0.1341 0.953 0.944 0 0.000 0 0.056
#> SRR1643344 1 0.1341 0.953 0.944 0 0.000 0 0.056
#> SRR1643345 1 0.1341 0.953 0.944 0 0.000 0 0.056
#> SRR1643346 1 0.1341 0.953 0.944 0 0.000 0 0.056
#> SRR1643347 1 0.1341 0.953 0.944 0 0.000 0 0.056
#> SRR1643348 1 0.1341 0.953 0.944 0 0.000 0 0.056
#> SRR1643349 1 0.1341 0.953 0.944 0 0.000 0 0.056
#> SRR1643350 1 0.1341 0.953 0.944 0 0.000 0 0.056
#> SRR1643351 1 0.1341 0.953 0.944 0 0.000 0 0.056
#> SRR1643352 1 0.1341 0.953 0.944 0 0.000 0 0.056
#> SRR1643353 1 0.1341 0.953 0.944 0 0.000 0 0.056
#> SRR1643354 1 0.1341 0.953 0.944 0 0.000 0 0.056
#> SRR1643355 1 0.1341 0.953 0.944 0 0.000 0 0.056
#> SRR1643356 1 0.1341 0.953 0.944 0 0.000 0 0.056
#> SRR1643357 1 0.1341 0.953 0.944 0 0.000 0 0.056
#> SRR1643358 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643359 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643360 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643361 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643362 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643363 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643364 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643365 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643366 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643367 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643368 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643369 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643370 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643371 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643372 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643373 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643374 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643375 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643376 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643377 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643378 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643379 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643380 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643381 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643382 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643383 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643384 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643385 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643386 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643387 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643388 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643389 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643390 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643391 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643392 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643393 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643394 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643395 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643396 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643397 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643398 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643399 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643400 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643401 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643402 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643403 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643404 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643405 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643406 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643407 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643408 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643409 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643410 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643411 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643412 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643413 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643414 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643415 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643416 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643417 1 0.1965 0.944 0.904 0 0.000 0 0.096
#> SRR1643418 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643419 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643420 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643421 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643422 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643423 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643424 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643425 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643426 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643427 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643428 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643429 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643430 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643431 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643432 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643433 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643434 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643435 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643436 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643437 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643438 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643439 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643440 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643441 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643442 1 0.0000 0.957 1.000 0 0.000 0 0.000
#> SRR1643443 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643505 4 0.0000 0.000 0.000 0 0.000 1 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0.000 0 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0.000 0 0.000
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643168 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643169 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643170 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643171 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643172 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643173 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643174 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643175 1 0.356 0.405 0.664 0 0.000 0.336 0.000 0
#> SRR1643176 1 0.356 0.405 0.664 0 0.000 0.336 0.000 0
#> SRR1643177 1 0.356 0.405 0.664 0 0.000 0.336 0.000 0
#> SRR1643178 1 0.356 0.405 0.664 0 0.000 0.336 0.000 0
#> SRR1643180 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643181 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643182 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643183 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643184 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643185 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643186 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643187 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643188 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643189 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643190 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643191 1 0.356 0.405 0.664 0 0.000 0.336 0.000 0
#> SRR1643192 1 0.356 0.405 0.664 0 0.000 0.336 0.000 0
#> SRR1643193 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643194 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643195 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643196 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643197 1 0.356 0.405 0.664 0 0.000 0.336 0.000 0
#> SRR1643198 1 0.356 0.405 0.664 0 0.000 0.336 0.000 0
#> SRR1643199 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643200 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643201 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643202 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643203 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643204 1 0.379 0.306 0.584 0 0.000 0.416 0.000 0
#> SRR1643205 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643206 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643207 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643208 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643209 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643210 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643211 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643212 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643213 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643214 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643215 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643216 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643217 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643218 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643219 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643220 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643221 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643222 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643223 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643224 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643225 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643226 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643227 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643228 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643229 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643230 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643231 5 0.000 1.000 0.000 0 0.000 0.000 1.000 0
#> SRR1643232 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643233 3 0.079 0.968 0.000 0 0.968 0.000 0.032 0
#> SRR1643234 3 0.079 0.968 0.000 0 0.968 0.000 0.032 0
#> SRR1643235 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643236 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643237 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643238 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643239 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643240 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643241 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643242 5 0.000 1.000 0.000 0 0.000 0.000 1.000 0
#> SRR1643243 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643245 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643246 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643247 3 0.000 0.998 0.000 0 1.000 0.000 0.000 0
#> SRR1643248 3 0.079 0.968 0.000 0 0.968 0.000 0.032 0
#> SRR1643249 5 0.000 1.000 0.000 0 0.000 0.000 1.000 0
#> SRR1643250 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643251 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643252 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643253 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643254 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643255 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643256 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643257 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643258 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643259 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643260 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643261 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643262 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643263 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643264 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643266 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643267 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643268 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643269 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643270 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643271 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643272 1 0.372 -0.429 0.616 0 0.000 0.384 0.000 0
#> SRR1643273 1 0.362 -0.341 0.648 0 0.000 0.352 0.000 0
#> SRR1643274 1 0.362 -0.341 0.648 0 0.000 0.352 0.000 0
#> SRR1643275 1 0.362 -0.341 0.648 0 0.000 0.352 0.000 0
#> SRR1643276 1 0.362 -0.341 0.648 0 0.000 0.352 0.000 0
#> SRR1643277 1 0.362 -0.341 0.648 0 0.000 0.352 0.000 0
#> SRR1643278 1 0.362 -0.341 0.648 0 0.000 0.352 0.000 0
#> SRR1643279 1 0.362 -0.341 0.648 0 0.000 0.352 0.000 0
#> SRR1643280 1 0.362 -0.341 0.648 0 0.000 0.352 0.000 0
#> SRR1643281 1 0.362 -0.341 0.648 0 0.000 0.352 0.000 0
#> SRR1643282 1 0.362 -0.341 0.648 0 0.000 0.352 0.000 0
#> SRR1643283 1 0.362 -0.341 0.648 0 0.000 0.352 0.000 0
#> SRR1643284 1 0.362 -0.341 0.648 0 0.000 0.352 0.000 0
#> SRR1643285 1 0.362 -0.341 0.648 0 0.000 0.352 0.000 0
#> SRR1643286 1 0.362 -0.341 0.648 0 0.000 0.352 0.000 0
#> SRR1643287 1 0.376 -0.471 0.600 0 0.000 0.400 0.000 0
#> SRR1643288 1 0.376 -0.471 0.600 0 0.000 0.400 0.000 0
#> SRR1643289 1 0.376 -0.471 0.600 0 0.000 0.400 0.000 0
#> SRR1643290 1 0.376 -0.471 0.600 0 0.000 0.400 0.000 0
#> SRR1643291 1 0.376 -0.471 0.600 0 0.000 0.400 0.000 0
#> SRR1643292 1 0.376 -0.471 0.600 0 0.000 0.400 0.000 0
#> SRR1643293 1 0.376 -0.471 0.600 0 0.000 0.400 0.000 0
#> SRR1643294 1 0.376 -0.471 0.600 0 0.000 0.400 0.000 0
#> SRR1643295 1 0.376 -0.471 0.600 0 0.000 0.400 0.000 0
#> SRR1643296 1 0.376 -0.471 0.600 0 0.000 0.400 0.000 0
#> SRR1643297 1 0.376 -0.471 0.600 0 0.000 0.400 0.000 0
#> SRR1643298 1 0.376 -0.471 0.600 0 0.000 0.400 0.000 0
#> SRR1643299 1 0.376 -0.471 0.600 0 0.000 0.400 0.000 0
#> SRR1643300 1 0.376 -0.471 0.600 0 0.000 0.400 0.000 0
#> SRR1643301 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643302 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643303 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643304 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643305 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643306 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643307 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643308 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643309 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643310 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643311 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643312 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643313 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643314 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643315 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643316 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643317 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643318 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643319 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643320 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643321 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643322 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643323 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643324 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643325 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643326 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643327 1 0.000 0.393 1.000 0 0.000 0.000 0.000 0
#> SRR1643328 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643329 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643330 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643331 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643332 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643333 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643334 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643335 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643336 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643337 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643338 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643339 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643340 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643341 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643342 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643343 1 0.381 -0.180 0.572 0 0.000 0.428 0.000 0
#> SRR1643344 1 0.381 -0.180 0.572 0 0.000 0.428 0.000 0
#> SRR1643345 1 0.381 -0.180 0.572 0 0.000 0.428 0.000 0
#> SRR1643346 1 0.381 -0.180 0.572 0 0.000 0.428 0.000 0
#> SRR1643347 1 0.381 -0.180 0.572 0 0.000 0.428 0.000 0
#> SRR1643348 1 0.381 -0.180 0.572 0 0.000 0.428 0.000 0
#> SRR1643349 1 0.381 -0.180 0.572 0 0.000 0.428 0.000 0
#> SRR1643350 1 0.381 -0.180 0.572 0 0.000 0.428 0.000 0
#> SRR1643351 1 0.381 -0.180 0.572 0 0.000 0.428 0.000 0
#> SRR1643352 1 0.381 -0.180 0.572 0 0.000 0.428 0.000 0
#> SRR1643353 1 0.381 -0.180 0.572 0 0.000 0.428 0.000 0
#> SRR1643354 1 0.381 -0.180 0.572 0 0.000 0.428 0.000 0
#> SRR1643355 1 0.381 -0.180 0.572 0 0.000 0.428 0.000 0
#> SRR1643356 1 0.381 -0.180 0.572 0 0.000 0.428 0.000 0
#> SRR1643357 1 0.381 -0.180 0.572 0 0.000 0.428 0.000 0
#> SRR1643358 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643359 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643360 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643361 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643362 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643363 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643364 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643365 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643366 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643367 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643368 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643369 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643370 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643371 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643372 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643373 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643374 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643375 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643376 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643377 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643378 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643379 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643380 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643381 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643382 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643383 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643384 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643385 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643386 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643387 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643388 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643389 1 0.386 -0.657 0.532 0 0.000 0.468 0.000 0
#> SRR1643390 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643391 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643392 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643393 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643394 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643395 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643396 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643397 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643398 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643399 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643400 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643401 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643402 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643403 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643404 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643405 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643406 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643407 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643408 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643409 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643410 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643411 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643412 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643413 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643414 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643415 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643416 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643417 1 0.291 0.488 0.784 0 0.000 0.216 0.000 0
#> SRR1643418 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643419 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643420 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643421 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643422 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643423 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643424 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643425 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643426 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643427 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643428 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643429 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643430 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643431 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643432 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643433 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643434 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643435 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643436 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643437 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643438 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643439 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643440 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643441 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643442 4 0.379 1.000 0.416 0 0.000 0.584 0.000 0
#> SRR1643443 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643444 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643445 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643446 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643447 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643448 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643449 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643450 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643451 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643452 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643453 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643454 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643455 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643456 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643457 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643458 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643459 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643460 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643461 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643462 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643463 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643464 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643466 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643467 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643468 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643469 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643470 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643471 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643472 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643473 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643474 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643475 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643477 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643478 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643479 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643480 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643481 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643482 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643483 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643484 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643485 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643486 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643487 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643488 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643489 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643490 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643491 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643492 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643493 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643494 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643495 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643496 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643497 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643498 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643499 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643500 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643501 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643502 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643503 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643504 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643505 6 0.000 0.000 0.000 0 0.000 0.000 0.000 1
#> SRR1643506 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643507 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643508 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643509 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643510 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643511 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643512 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643513 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643531 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643532 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643533 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643534 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643535 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643536 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643537 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643538 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643539 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643540 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643541 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643542 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643543 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643544 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643514 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643515 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643516 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643517 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643518 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643519 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643520 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643521 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643522 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643523 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643524 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643525 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643526 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643527 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643528 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643529 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643530 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643545 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643546 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643547 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643548 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643549 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643550 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643551 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643552 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643553 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643554 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643555 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643556 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643558 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643559 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643560 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643561 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643562 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643563 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643564 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643565 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643566 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643567 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643568 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643569 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643570 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643571 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
#> SRR1643572 2 0.000 1.000 0.000 1 0.000 0.000 0.000 0
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["SD", "kmeans"]
# you can also extract it by
# res = res_list["SD:kmeans"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'SD' method.
#> Subgroups are detected by 'kmeans' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 2.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 0.509 0.971 0.942 0.4029 0.566 0.566
#> 3 3 0.824 0.961 0.926 0.3272 0.874 0.777
#> 4 4 0.578 0.826 0.832 0.1935 1.000 1.000
#> 5 5 0.655 0.722 0.730 0.1022 0.842 0.639
#> 6 6 0.632 0.450 0.666 0.0601 0.963 0.868
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 2
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0.574 0.975 0.864 0.136
#> SRR1643168 1 0.574 0.975 0.864 0.136
#> SRR1643169 1 0.574 0.975 0.864 0.136
#> SRR1643170 1 0.574 0.975 0.864 0.136
#> SRR1643171 1 0.574 0.975 0.864 0.136
#> SRR1643172 1 0.574 0.975 0.864 0.136
#> SRR1643173 1 0.574 0.975 0.864 0.136
#> SRR1643174 1 0.574 0.975 0.864 0.136
#> SRR1643175 1 0.574 0.975 0.864 0.136
#> SRR1643176 1 0.574 0.975 0.864 0.136
#> SRR1643177 1 0.574 0.975 0.864 0.136
#> SRR1643178 1 0.574 0.975 0.864 0.136
#> SRR1643180 1 0.574 0.975 0.864 0.136
#> SRR1643181 1 0.574 0.975 0.864 0.136
#> SRR1643182 1 0.574 0.975 0.864 0.136
#> SRR1643183 1 0.574 0.975 0.864 0.136
#> SRR1643184 1 0.574 0.975 0.864 0.136
#> SRR1643185 1 0.574 0.975 0.864 0.136
#> SRR1643186 1 0.574 0.975 0.864 0.136
#> SRR1643187 1 0.574 0.975 0.864 0.136
#> SRR1643188 1 0.574 0.975 0.864 0.136
#> SRR1643189 1 0.574 0.975 0.864 0.136
#> SRR1643190 1 0.574 0.975 0.864 0.136
#> SRR1643191 1 0.574 0.975 0.864 0.136
#> SRR1643192 1 0.574 0.975 0.864 0.136
#> SRR1643193 1 0.574 0.975 0.864 0.136
#> SRR1643194 1 0.574 0.975 0.864 0.136
#> SRR1643195 1 0.574 0.975 0.864 0.136
#> SRR1643196 1 0.574 0.975 0.864 0.136
#> SRR1643197 1 0.574 0.975 0.864 0.136
#> SRR1643198 1 0.574 0.975 0.864 0.136
#> SRR1643199 1 0.574 0.975 0.864 0.136
#> SRR1643200 1 0.574 0.975 0.864 0.136
#> SRR1643201 1 0.574 0.975 0.864 0.136
#> SRR1643202 1 0.574 0.975 0.864 0.136
#> SRR1643203 1 0.574 0.975 0.864 0.136
#> SRR1643204 1 0.574 0.975 0.864 0.136
#> SRR1643205 1 0.000 0.866 1.000 0.000
#> SRR1643206 1 0.000 0.866 1.000 0.000
#> SRR1643207 1 0.000 0.866 1.000 0.000
#> SRR1643208 1 0.000 0.866 1.000 0.000
#> SRR1643209 1 0.000 0.866 1.000 0.000
#> SRR1643210 1 0.000 0.866 1.000 0.000
#> SRR1643211 1 0.000 0.866 1.000 0.000
#> SRR1643212 1 0.000 0.866 1.000 0.000
#> SRR1643213 1 0.000 0.866 1.000 0.000
#> SRR1643214 1 0.000 0.866 1.000 0.000
#> SRR1643215 1 0.000 0.866 1.000 0.000
#> SRR1643216 1 0.000 0.866 1.000 0.000
#> SRR1643217 1 0.000 0.866 1.000 0.000
#> SRR1643218 1 0.000 0.866 1.000 0.000
#> SRR1643219 1 0.000 0.866 1.000 0.000
#> SRR1643220 1 0.000 0.866 1.000 0.000
#> SRR1643221 1 0.000 0.866 1.000 0.000
#> SRR1643222 1 0.000 0.866 1.000 0.000
#> SRR1643223 1 0.000 0.866 1.000 0.000
#> SRR1643224 1 0.000 0.866 1.000 0.000
#> SRR1643225 1 0.000 0.866 1.000 0.000
#> SRR1643226 1 0.000 0.866 1.000 0.000
#> SRR1643227 1 0.000 0.866 1.000 0.000
#> SRR1643228 1 0.000 0.866 1.000 0.000
#> SRR1643229 1 0.000 0.866 1.000 0.000
#> SRR1643230 1 0.000 0.866 1.000 0.000
#> SRR1643231 1 0.000 0.866 1.000 0.000
#> SRR1643232 1 0.000 0.866 1.000 0.000
#> SRR1643233 1 0.000 0.866 1.000 0.000
#> SRR1643234 1 0.000 0.866 1.000 0.000
#> SRR1643235 1 0.000 0.866 1.000 0.000
#> SRR1643236 1 0.000 0.866 1.000 0.000
#> SRR1643237 1 0.000 0.866 1.000 0.000
#> SRR1643238 1 0.000 0.866 1.000 0.000
#> SRR1643239 1 0.000 0.866 1.000 0.000
#> SRR1643240 1 0.000 0.866 1.000 0.000
#> SRR1643241 1 0.000 0.866 1.000 0.000
#> SRR1643242 1 0.000 0.866 1.000 0.000
#> SRR1643243 1 0.000 0.866 1.000 0.000
#> SRR1643245 1 0.000 0.866 1.000 0.000
#> SRR1643246 1 0.000 0.866 1.000 0.000
#> SRR1643247 1 0.000 0.866 1.000 0.000
#> SRR1643248 1 0.000 0.866 1.000 0.000
#> SRR1643249 1 0.000 0.866 1.000 0.000
#> SRR1643250 1 0.574 0.975 0.864 0.136
#> SRR1643251 1 0.574 0.975 0.864 0.136
#> SRR1643252 1 0.574 0.975 0.864 0.136
#> SRR1643253 1 0.574 0.975 0.864 0.136
#> SRR1643254 1 0.574 0.975 0.864 0.136
#> SRR1643255 1 0.574 0.975 0.864 0.136
#> SRR1643256 1 0.574 0.975 0.864 0.136
#> SRR1643257 1 0.574 0.975 0.864 0.136
#> SRR1643258 1 0.574 0.975 0.864 0.136
#> SRR1643259 1 0.574 0.975 0.864 0.136
#> SRR1643260 1 0.574 0.975 0.864 0.136
#> SRR1643261 1 0.574 0.975 0.864 0.136
#> SRR1643262 1 0.574 0.975 0.864 0.136
#> SRR1643263 1 0.574 0.975 0.864 0.136
#> SRR1643264 1 0.574 0.975 0.864 0.136
#> SRR1643266 1 0.574 0.975 0.864 0.136
#> SRR1643267 1 0.574 0.975 0.864 0.136
#> SRR1643268 1 0.574 0.975 0.864 0.136
#> SRR1643269 1 0.574 0.975 0.864 0.136
#> SRR1643270 1 0.574 0.975 0.864 0.136
#> SRR1643271 1 0.574 0.975 0.864 0.136
#> SRR1643272 1 0.574 0.975 0.864 0.136
#> SRR1643273 1 0.574 0.975 0.864 0.136
#> SRR1643274 1 0.574 0.975 0.864 0.136
#> SRR1643275 1 0.574 0.975 0.864 0.136
#> SRR1643276 1 0.574 0.975 0.864 0.136
#> SRR1643277 1 0.574 0.975 0.864 0.136
#> SRR1643278 1 0.574 0.975 0.864 0.136
#> SRR1643279 1 0.574 0.975 0.864 0.136
#> SRR1643280 1 0.574 0.975 0.864 0.136
#> SRR1643281 1 0.574 0.975 0.864 0.136
#> SRR1643282 1 0.574 0.975 0.864 0.136
#> SRR1643283 1 0.574 0.975 0.864 0.136
#> SRR1643284 1 0.574 0.975 0.864 0.136
#> SRR1643285 1 0.574 0.975 0.864 0.136
#> SRR1643286 1 0.574 0.975 0.864 0.136
#> SRR1643287 1 0.574 0.975 0.864 0.136
#> SRR1643288 1 0.574 0.975 0.864 0.136
#> SRR1643289 1 0.574 0.975 0.864 0.136
#> SRR1643290 1 0.574 0.975 0.864 0.136
#> SRR1643291 1 0.574 0.975 0.864 0.136
#> SRR1643292 1 0.574 0.975 0.864 0.136
#> SRR1643293 1 0.574 0.975 0.864 0.136
#> SRR1643294 1 0.574 0.975 0.864 0.136
#> SRR1643295 1 0.574 0.975 0.864 0.136
#> SRR1643296 1 0.574 0.975 0.864 0.136
#> SRR1643297 1 0.574 0.975 0.864 0.136
#> SRR1643298 1 0.574 0.975 0.864 0.136
#> SRR1643299 1 0.574 0.975 0.864 0.136
#> SRR1643300 1 0.574 0.975 0.864 0.136
#> SRR1643301 1 0.574 0.975 0.864 0.136
#> SRR1643302 1 0.574 0.975 0.864 0.136
#> SRR1643303 1 0.574 0.975 0.864 0.136
#> SRR1643304 1 0.574 0.975 0.864 0.136
#> SRR1643305 1 0.574 0.975 0.864 0.136
#> SRR1643306 1 0.574 0.975 0.864 0.136
#> SRR1643307 1 0.574 0.975 0.864 0.136
#> SRR1643308 1 0.574 0.975 0.864 0.136
#> SRR1643309 1 0.574 0.975 0.864 0.136
#> SRR1643310 1 0.574 0.975 0.864 0.136
#> SRR1643311 1 0.574 0.975 0.864 0.136
#> SRR1643312 1 0.574 0.975 0.864 0.136
#> SRR1643313 1 0.574 0.975 0.864 0.136
#> SRR1643314 1 0.574 0.975 0.864 0.136
#> SRR1643315 1 0.574 0.975 0.864 0.136
#> SRR1643316 1 0.574 0.975 0.864 0.136
#> SRR1643317 1 0.574 0.975 0.864 0.136
#> SRR1643318 1 0.574 0.975 0.864 0.136
#> SRR1643319 1 0.574 0.975 0.864 0.136
#> SRR1643320 1 0.574 0.975 0.864 0.136
#> SRR1643321 1 0.574 0.975 0.864 0.136
#> SRR1643322 1 0.574 0.975 0.864 0.136
#> SRR1643323 1 0.574 0.975 0.864 0.136
#> SRR1643324 1 0.574 0.975 0.864 0.136
#> SRR1643325 1 0.574 0.975 0.864 0.136
#> SRR1643326 1 0.574 0.975 0.864 0.136
#> SRR1643327 1 0.574 0.975 0.864 0.136
#> SRR1643328 1 0.574 0.975 0.864 0.136
#> SRR1643329 1 0.574 0.975 0.864 0.136
#> SRR1643330 1 0.574 0.975 0.864 0.136
#> SRR1643331 1 0.574 0.975 0.864 0.136
#> SRR1643332 1 0.574 0.975 0.864 0.136
#> SRR1643333 1 0.574 0.975 0.864 0.136
#> SRR1643334 1 0.574 0.975 0.864 0.136
#> SRR1643335 1 0.574 0.975 0.864 0.136
#> SRR1643336 1 0.574 0.975 0.864 0.136
#> SRR1643337 1 0.574 0.975 0.864 0.136
#> SRR1643338 1 0.574 0.975 0.864 0.136
#> SRR1643339 1 0.574 0.975 0.864 0.136
#> SRR1643340 1 0.574 0.975 0.864 0.136
#> SRR1643341 1 0.574 0.975 0.864 0.136
#> SRR1643342 1 0.574 0.975 0.864 0.136
#> SRR1643343 1 0.574 0.975 0.864 0.136
#> SRR1643344 1 0.574 0.975 0.864 0.136
#> SRR1643345 1 0.574 0.975 0.864 0.136
#> SRR1643346 1 0.574 0.975 0.864 0.136
#> SRR1643347 1 0.574 0.975 0.864 0.136
#> SRR1643348 1 0.574 0.975 0.864 0.136
#> SRR1643349 1 0.574 0.975 0.864 0.136
#> SRR1643350 1 0.574 0.975 0.864 0.136
#> SRR1643351 1 0.574 0.975 0.864 0.136
#> SRR1643352 1 0.574 0.975 0.864 0.136
#> SRR1643353 1 0.574 0.975 0.864 0.136
#> SRR1643354 1 0.574 0.975 0.864 0.136
#> SRR1643355 1 0.574 0.975 0.864 0.136
#> SRR1643356 1 0.574 0.975 0.864 0.136
#> SRR1643357 1 0.574 0.975 0.864 0.136
#> SRR1643358 1 0.574 0.975 0.864 0.136
#> SRR1643359 1 0.574 0.975 0.864 0.136
#> SRR1643360 1 0.574 0.975 0.864 0.136
#> SRR1643361 1 0.574 0.975 0.864 0.136
#> SRR1643362 1 0.574 0.975 0.864 0.136
#> SRR1643363 1 0.574 0.975 0.864 0.136
#> SRR1643364 1 0.574 0.975 0.864 0.136
#> SRR1643365 1 0.574 0.975 0.864 0.136
#> SRR1643366 1 0.574 0.975 0.864 0.136
#> SRR1643367 1 0.574 0.975 0.864 0.136
#> SRR1643368 1 0.574 0.975 0.864 0.136
#> SRR1643369 1 0.574 0.975 0.864 0.136
#> SRR1643370 1 0.574 0.975 0.864 0.136
#> SRR1643371 1 0.574 0.975 0.864 0.136
#> SRR1643372 1 0.574 0.975 0.864 0.136
#> SRR1643373 1 0.574 0.975 0.864 0.136
#> SRR1643374 1 0.574 0.975 0.864 0.136
#> SRR1643375 1 0.574 0.975 0.864 0.136
#> SRR1643376 1 0.574 0.975 0.864 0.136
#> SRR1643377 1 0.574 0.975 0.864 0.136
#> SRR1643378 1 0.574 0.975 0.864 0.136
#> SRR1643379 1 0.574 0.975 0.864 0.136
#> SRR1643380 1 0.574 0.975 0.864 0.136
#> SRR1643381 1 0.574 0.975 0.864 0.136
#> SRR1643382 1 0.574 0.975 0.864 0.136
#> SRR1643383 1 0.574 0.975 0.864 0.136
#> SRR1643384 1 0.574 0.975 0.864 0.136
#> SRR1643385 1 0.574 0.975 0.864 0.136
#> SRR1643386 1 0.574 0.975 0.864 0.136
#> SRR1643387 1 0.574 0.975 0.864 0.136
#> SRR1643388 1 0.574 0.975 0.864 0.136
#> SRR1643389 1 0.574 0.975 0.864 0.136
#> SRR1643390 1 0.574 0.975 0.864 0.136
#> SRR1643391 1 0.574 0.975 0.864 0.136
#> SRR1643392 1 0.574 0.975 0.864 0.136
#> SRR1643393 1 0.574 0.975 0.864 0.136
#> SRR1643394 1 0.574 0.975 0.864 0.136
#> SRR1643395 1 0.574 0.975 0.864 0.136
#> SRR1643396 1 0.574 0.975 0.864 0.136
#> SRR1643397 1 0.574 0.975 0.864 0.136
#> SRR1643398 1 0.574 0.975 0.864 0.136
#> SRR1643399 1 0.574 0.975 0.864 0.136
#> SRR1643400 1 0.574 0.975 0.864 0.136
#> SRR1643401 1 0.574 0.975 0.864 0.136
#> SRR1643402 1 0.574 0.975 0.864 0.136
#> SRR1643403 1 0.574 0.975 0.864 0.136
#> SRR1643404 1 0.574 0.975 0.864 0.136
#> SRR1643405 1 0.574 0.975 0.864 0.136
#> SRR1643406 1 0.574 0.975 0.864 0.136
#> SRR1643407 1 0.574 0.975 0.864 0.136
#> SRR1643408 1 0.574 0.975 0.864 0.136
#> SRR1643409 1 0.574 0.975 0.864 0.136
#> SRR1643410 1 0.574 0.975 0.864 0.136
#> SRR1643411 1 0.574 0.975 0.864 0.136
#> SRR1643412 1 0.574 0.975 0.864 0.136
#> SRR1643413 1 0.574 0.975 0.864 0.136
#> SRR1643414 1 0.574 0.975 0.864 0.136
#> SRR1643415 1 0.574 0.975 0.864 0.136
#> SRR1643416 1 0.574 0.975 0.864 0.136
#> SRR1643417 1 0.574 0.975 0.864 0.136
#> SRR1643418 1 0.574 0.975 0.864 0.136
#> SRR1643419 1 0.574 0.975 0.864 0.136
#> SRR1643420 1 0.574 0.975 0.864 0.136
#> SRR1643421 1 0.574 0.975 0.864 0.136
#> SRR1643422 1 0.574 0.975 0.864 0.136
#> SRR1643423 1 0.574 0.975 0.864 0.136
#> SRR1643424 1 0.574 0.975 0.864 0.136
#> SRR1643425 1 0.574 0.975 0.864 0.136
#> SRR1643426 1 0.574 0.975 0.864 0.136
#> SRR1643427 1 0.574 0.975 0.864 0.136
#> SRR1643428 1 0.574 0.975 0.864 0.136
#> SRR1643429 1 0.574 0.975 0.864 0.136
#> SRR1643430 1 0.574 0.975 0.864 0.136
#> SRR1643431 1 0.574 0.975 0.864 0.136
#> SRR1643432 1 0.574 0.975 0.864 0.136
#> SRR1643433 1 0.574 0.975 0.864 0.136
#> SRR1643434 1 0.574 0.975 0.864 0.136
#> SRR1643435 1 0.574 0.975 0.864 0.136
#> SRR1643436 1 0.574 0.975 0.864 0.136
#> SRR1643437 1 0.574 0.975 0.864 0.136
#> SRR1643438 1 0.574 0.975 0.864 0.136
#> SRR1643439 1 0.574 0.975 0.864 0.136
#> SRR1643440 1 0.574 0.975 0.864 0.136
#> SRR1643441 1 0.574 0.975 0.864 0.136
#> SRR1643442 1 0.574 0.975 0.864 0.136
#> SRR1643443 2 0.000 1.000 0.000 1.000
#> SRR1643444 2 0.000 1.000 0.000 1.000
#> SRR1643445 2 0.000 1.000 0.000 1.000
#> SRR1643446 2 0.000 1.000 0.000 1.000
#> SRR1643447 2 0.000 1.000 0.000 1.000
#> SRR1643448 2 0.000 1.000 0.000 1.000
#> SRR1643449 2 0.000 1.000 0.000 1.000
#> SRR1643450 2 0.000 1.000 0.000 1.000
#> SRR1643451 2 0.000 1.000 0.000 1.000
#> SRR1643452 2 0.000 1.000 0.000 1.000
#> SRR1643453 2 0.000 1.000 0.000 1.000
#> SRR1643454 2 0.000 1.000 0.000 1.000
#> SRR1643455 2 0.000 1.000 0.000 1.000
#> SRR1643456 2 0.000 1.000 0.000 1.000
#> SRR1643457 2 0.000 1.000 0.000 1.000
#> SRR1643458 2 0.000 1.000 0.000 1.000
#> SRR1643459 2 0.000 1.000 0.000 1.000
#> SRR1643460 2 0.000 1.000 0.000 1.000
#> SRR1643461 2 0.000 1.000 0.000 1.000
#> SRR1643462 2 0.000 1.000 0.000 1.000
#> SRR1643463 2 0.000 1.000 0.000 1.000
#> SRR1643464 2 0.000 1.000 0.000 1.000
#> SRR1643466 2 0.000 1.000 0.000 1.000
#> SRR1643467 2 0.000 1.000 0.000 1.000
#> SRR1643468 2 0.000 1.000 0.000 1.000
#> SRR1643469 2 0.000 1.000 0.000 1.000
#> SRR1643470 2 0.000 1.000 0.000 1.000
#> SRR1643471 2 0.000 1.000 0.000 1.000
#> SRR1643472 2 0.000 1.000 0.000 1.000
#> SRR1643473 2 0.000 1.000 0.000 1.000
#> SRR1643474 2 0.000 1.000 0.000 1.000
#> SRR1643475 2 0.000 1.000 0.000 1.000
#> SRR1643477 2 0.000 1.000 0.000 1.000
#> SRR1643478 2 0.000 1.000 0.000 1.000
#> SRR1643479 2 0.000 1.000 0.000 1.000
#> SRR1643480 2 0.000 1.000 0.000 1.000
#> SRR1643481 2 0.000 1.000 0.000 1.000
#> SRR1643482 2 0.000 1.000 0.000 1.000
#> SRR1643483 2 0.000 1.000 0.000 1.000
#> SRR1643484 2 0.000 1.000 0.000 1.000
#> SRR1643485 2 0.000 1.000 0.000 1.000
#> SRR1643486 2 0.000 1.000 0.000 1.000
#> SRR1643487 2 0.000 1.000 0.000 1.000
#> SRR1643488 2 0.000 1.000 0.000 1.000
#> SRR1643489 2 0.000 1.000 0.000 1.000
#> SRR1643490 2 0.000 1.000 0.000 1.000
#> SRR1643491 2 0.000 1.000 0.000 1.000
#> SRR1643492 2 0.000 1.000 0.000 1.000
#> SRR1643493 2 0.000 1.000 0.000 1.000
#> SRR1643494 2 0.000 1.000 0.000 1.000
#> SRR1643495 2 0.000 1.000 0.000 1.000
#> SRR1643496 2 0.000 1.000 0.000 1.000
#> SRR1643497 2 0.000 1.000 0.000 1.000
#> SRR1643498 2 0.000 1.000 0.000 1.000
#> SRR1643499 2 0.000 1.000 0.000 1.000
#> SRR1643500 2 0.000 1.000 0.000 1.000
#> SRR1643501 2 0.000 1.000 0.000 1.000
#> SRR1643502 2 0.000 1.000 0.000 1.000
#> SRR1643503 2 0.000 1.000 0.000 1.000
#> SRR1643504 2 0.000 1.000 0.000 1.000
#> SRR1643505 2 0.000 1.000 0.000 1.000
#> SRR1643506 2 0.000 1.000 0.000 1.000
#> SRR1643507 2 0.000 1.000 0.000 1.000
#> SRR1643508 2 0.000 1.000 0.000 1.000
#> SRR1643509 2 0.000 1.000 0.000 1.000
#> SRR1643510 2 0.000 1.000 0.000 1.000
#> SRR1643511 2 0.000 1.000 0.000 1.000
#> SRR1643512 2 0.000 1.000 0.000 1.000
#> SRR1643513 2 0.000 1.000 0.000 1.000
#> SRR1643531 2 0.000 1.000 0.000 1.000
#> SRR1643532 2 0.000 1.000 0.000 1.000
#> SRR1643533 2 0.000 1.000 0.000 1.000
#> SRR1643534 2 0.000 1.000 0.000 1.000
#> SRR1643535 2 0.000 1.000 0.000 1.000
#> SRR1643536 2 0.000 1.000 0.000 1.000
#> SRR1643537 2 0.000 1.000 0.000 1.000
#> SRR1643538 2 0.000 1.000 0.000 1.000
#> SRR1643539 2 0.000 1.000 0.000 1.000
#> SRR1643540 2 0.000 1.000 0.000 1.000
#> SRR1643541 2 0.000 1.000 0.000 1.000
#> SRR1643542 2 0.000 1.000 0.000 1.000
#> SRR1643543 2 0.000 1.000 0.000 1.000
#> SRR1643544 2 0.000 1.000 0.000 1.000
#> SRR1643514 2 0.000 1.000 0.000 1.000
#> SRR1643515 2 0.000 1.000 0.000 1.000
#> SRR1643516 2 0.000 1.000 0.000 1.000
#> SRR1643517 2 0.000 1.000 0.000 1.000
#> SRR1643518 2 0.000 1.000 0.000 1.000
#> SRR1643519 2 0.000 1.000 0.000 1.000
#> SRR1643520 2 0.000 1.000 0.000 1.000
#> SRR1643521 2 0.000 1.000 0.000 1.000
#> SRR1643522 2 0.000 1.000 0.000 1.000
#> SRR1643523 2 0.000 1.000 0.000 1.000
#> SRR1643524 2 0.000 1.000 0.000 1.000
#> SRR1643525 2 0.000 1.000 0.000 1.000
#> SRR1643526 2 0.000 1.000 0.000 1.000
#> SRR1643527 2 0.000 1.000 0.000 1.000
#> SRR1643528 2 0.000 1.000 0.000 1.000
#> SRR1643529 2 0.000 1.000 0.000 1.000
#> SRR1643530 2 0.000 1.000 0.000 1.000
#> SRR1643545 2 0.000 1.000 0.000 1.000
#> SRR1643546 2 0.000 1.000 0.000 1.000
#> SRR1643547 2 0.000 1.000 0.000 1.000
#> SRR1643548 2 0.000 1.000 0.000 1.000
#> SRR1643549 2 0.000 1.000 0.000 1.000
#> SRR1643550 2 0.000 1.000 0.000 1.000
#> SRR1643551 2 0.000 1.000 0.000 1.000
#> SRR1643552 2 0.000 1.000 0.000 1.000
#> SRR1643553 2 0.000 1.000 0.000 1.000
#> SRR1643554 2 0.000 1.000 0.000 1.000
#> SRR1643555 2 0.000 1.000 0.000 1.000
#> SRR1643556 2 0.000 1.000 0.000 1.000
#> SRR1643558 2 0.000 1.000 0.000 1.000
#> SRR1643559 2 0.000 1.000 0.000 1.000
#> SRR1643560 2 0.000 1.000 0.000 1.000
#> SRR1643561 2 0.000 1.000 0.000 1.000
#> SRR1643562 2 0.000 1.000 0.000 1.000
#> SRR1643563 2 0.000 1.000 0.000 1.000
#> SRR1643564 2 0.000 1.000 0.000 1.000
#> SRR1643565 2 0.000 1.000 0.000 1.000
#> SRR1643566 2 0.000 1.000 0.000 1.000
#> SRR1643567 2 0.000 1.000 0.000 1.000
#> SRR1643568 2 0.000 1.000 0.000 1.000
#> SRR1643569 2 0.000 1.000 0.000 1.000
#> SRR1643570 2 0.000 1.000 0.000 1.000
#> SRR1643571 2 0.000 1.000 0.000 1.000
#> SRR1643572 2 0.000 1.000 0.000 1.000
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643168 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643169 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643170 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643171 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643172 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643173 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643174 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643175 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643176 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643177 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643178 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643180 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643181 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643182 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643183 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643184 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643185 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643186 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643187 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643188 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643189 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643190 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643191 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643192 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643193 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643194 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643195 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643196 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643197 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643198 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643199 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643200 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643201 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643202 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643203 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643204 1 0.1753 0.942 0.952 0.000 0.048
#> SRR1643205 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643206 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643207 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643208 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643209 3 0.5845 0.997 0.308 0.004 0.688
#> SRR1643210 3 0.5845 0.997 0.308 0.004 0.688
#> SRR1643211 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643212 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643213 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643214 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643215 3 0.6172 0.996 0.308 0.012 0.680
#> SRR1643216 3 0.6172 0.996 0.308 0.012 0.680
#> SRR1643217 3 0.6172 0.996 0.308 0.012 0.680
#> SRR1643218 3 0.6172 0.996 0.308 0.012 0.680
#> SRR1643219 3 0.6172 0.996 0.308 0.012 0.680
#> SRR1643220 3 0.6172 0.996 0.308 0.012 0.680
#> SRR1643221 3 0.5845 0.997 0.308 0.004 0.688
#> SRR1643222 3 0.5845 0.997 0.308 0.004 0.688
#> SRR1643223 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643224 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643225 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643226 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643227 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643228 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643229 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643230 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643231 3 0.6172 0.996 0.308 0.012 0.680
#> SRR1643232 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643233 3 0.6313 0.995 0.308 0.016 0.676
#> SRR1643234 3 0.6313 0.995 0.308 0.016 0.676
#> SRR1643235 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643236 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643237 3 0.5621 0.997 0.308 0.000 0.692
#> SRR1643238 3 0.5845 0.997 0.308 0.004 0.688
#> SRR1643239 3 0.5845 0.997 0.308 0.004 0.688
#> SRR1643240 3 0.5845 0.997 0.308 0.004 0.688
#> SRR1643241 3 0.5845 0.997 0.308 0.004 0.688
#> SRR1643242 3 0.6313 0.995 0.308 0.016 0.676
#> SRR1643243 3 0.6313 0.995 0.308 0.016 0.676
#> SRR1643245 3 0.6313 0.995 0.308 0.016 0.676
#> SRR1643246 3 0.6313 0.995 0.308 0.016 0.676
#> SRR1643247 3 0.6313 0.995 0.308 0.016 0.676
#> SRR1643248 3 0.6018 0.996 0.308 0.008 0.684
#> SRR1643249 3 0.6313 0.995 0.308 0.016 0.676
#> SRR1643250 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643251 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643252 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643253 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643254 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643255 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643256 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643257 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643258 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643259 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643260 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643261 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643262 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643263 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643264 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643266 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643267 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643268 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643269 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643270 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643271 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643272 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643273 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643274 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643275 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643276 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643277 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643278 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643279 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643280 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643281 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643282 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643283 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643284 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643285 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643286 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643287 1 0.0424 0.982 0.992 0.000 0.008
#> SRR1643288 1 0.0424 0.982 0.992 0.000 0.008
#> SRR1643289 1 0.0424 0.982 0.992 0.000 0.008
#> SRR1643290 1 0.0424 0.982 0.992 0.000 0.008
#> SRR1643291 1 0.0424 0.982 0.992 0.000 0.008
#> SRR1643292 1 0.0424 0.982 0.992 0.000 0.008
#> SRR1643293 1 0.0424 0.982 0.992 0.000 0.008
#> SRR1643294 1 0.0424 0.982 0.992 0.000 0.008
#> SRR1643295 1 0.0424 0.982 0.992 0.000 0.008
#> SRR1643296 1 0.0424 0.982 0.992 0.000 0.008
#> SRR1643297 1 0.0424 0.982 0.992 0.000 0.008
#> SRR1643298 1 0.0424 0.982 0.992 0.000 0.008
#> SRR1643299 1 0.0424 0.982 0.992 0.000 0.008
#> SRR1643300 1 0.0424 0.982 0.992 0.000 0.008
#> SRR1643301 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643302 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643303 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643304 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643305 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643306 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643307 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643308 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643309 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643310 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643311 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643312 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643313 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643314 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643315 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643316 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643317 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643318 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643319 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643320 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643321 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643322 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643323 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643324 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643325 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643326 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643327 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643328 1 0.0237 0.984 0.996 0.000 0.004
#> SRR1643329 1 0.0237 0.984 0.996 0.000 0.004
#> SRR1643330 1 0.0237 0.984 0.996 0.000 0.004
#> SRR1643331 1 0.0237 0.984 0.996 0.000 0.004
#> SRR1643332 1 0.0237 0.984 0.996 0.000 0.004
#> SRR1643333 1 0.0237 0.984 0.996 0.000 0.004
#> SRR1643334 1 0.0237 0.984 0.996 0.000 0.004
#> SRR1643335 1 0.0237 0.984 0.996 0.000 0.004
#> SRR1643336 1 0.0237 0.984 0.996 0.000 0.004
#> SRR1643337 1 0.0237 0.984 0.996 0.000 0.004
#> SRR1643338 1 0.0237 0.984 0.996 0.000 0.004
#> SRR1643339 1 0.0237 0.984 0.996 0.000 0.004
#> SRR1643340 1 0.0237 0.984 0.996 0.000 0.004
#> SRR1643341 1 0.0237 0.984 0.996 0.000 0.004
#> SRR1643342 1 0.0237 0.984 0.996 0.000 0.004
#> SRR1643343 1 0.0424 0.981 0.992 0.000 0.008
#> SRR1643344 1 0.0424 0.981 0.992 0.000 0.008
#> SRR1643345 1 0.0424 0.981 0.992 0.000 0.008
#> SRR1643346 1 0.0424 0.981 0.992 0.000 0.008
#> SRR1643347 1 0.0424 0.981 0.992 0.000 0.008
#> SRR1643348 1 0.0424 0.981 0.992 0.000 0.008
#> SRR1643349 1 0.0424 0.981 0.992 0.000 0.008
#> SRR1643350 1 0.0424 0.981 0.992 0.000 0.008
#> SRR1643351 1 0.0424 0.981 0.992 0.000 0.008
#> SRR1643352 1 0.0424 0.981 0.992 0.000 0.008
#> SRR1643353 1 0.0424 0.981 0.992 0.000 0.008
#> SRR1643354 1 0.0424 0.981 0.992 0.000 0.008
#> SRR1643355 1 0.0424 0.981 0.992 0.000 0.008
#> SRR1643356 1 0.0424 0.981 0.992 0.000 0.008
#> SRR1643357 1 0.0424 0.981 0.992 0.000 0.008
#> SRR1643358 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643359 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643360 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643361 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643362 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643363 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643364 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643365 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643366 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643367 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643368 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643369 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643370 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643371 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643372 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643373 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643374 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643375 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643376 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643377 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643378 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643379 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643380 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643381 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643382 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643383 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643384 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643385 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643386 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643387 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643388 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643389 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643390 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643391 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643392 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643393 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643394 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643395 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643396 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643397 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643398 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643399 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643400 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643401 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643402 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643403 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643404 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643405 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643406 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643407 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643408 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643409 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643410 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643411 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643412 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643413 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643414 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643415 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643416 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643417 1 0.0000 0.985 1.000 0.000 0.000
#> SRR1643418 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643419 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643420 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643421 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643422 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643423 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643424 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643425 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643426 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643427 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643428 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643429 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643430 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643431 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643432 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643433 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643434 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643435 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643436 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643437 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643438 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643439 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643440 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643441 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643442 1 0.0592 0.978 0.988 0.000 0.012
#> SRR1643443 2 0.4953 0.903 0.016 0.808 0.176
#> SRR1643444 2 0.4953 0.903 0.016 0.808 0.176
#> SRR1643445 2 0.4953 0.903 0.016 0.808 0.176
#> SRR1643446 2 0.4953 0.903 0.016 0.808 0.176
#> SRR1643447 2 0.4953 0.903 0.016 0.808 0.176
#> SRR1643448 2 0.4953 0.903 0.016 0.808 0.176
#> SRR1643449 2 0.4953 0.903 0.016 0.808 0.176
#> SRR1643450 2 0.4953 0.903 0.016 0.808 0.176
#> SRR1643451 2 0.4953 0.903 0.016 0.808 0.176
#> SRR1643452 2 0.4953 0.903 0.016 0.808 0.176
#> SRR1643453 2 0.4953 0.903 0.016 0.808 0.176
#> SRR1643454 2 0.4953 0.903 0.016 0.808 0.176
#> SRR1643455 2 0.4953 0.903 0.016 0.808 0.176
#> SRR1643456 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643457 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643458 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643459 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643460 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643461 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643462 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643463 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643464 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643466 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643467 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643468 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643469 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643470 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643471 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643472 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643473 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643474 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643475 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643477 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643478 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643479 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643480 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643481 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643482 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643483 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643484 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643485 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643486 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643487 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643488 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643489 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643490 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643491 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643492 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643493 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643494 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643495 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643496 2 0.2599 0.926 0.016 0.932 0.052
#> SRR1643497 2 0.2804 0.925 0.016 0.924 0.060
#> SRR1643498 2 0.2804 0.925 0.016 0.924 0.060
#> SRR1643499 2 0.2804 0.925 0.016 0.924 0.060
#> SRR1643500 2 0.2804 0.925 0.016 0.924 0.060
#> SRR1643501 2 0.2804 0.925 0.016 0.924 0.060
#> SRR1643502 2 0.2804 0.925 0.016 0.924 0.060
#> SRR1643503 2 0.2804 0.925 0.016 0.924 0.060
#> SRR1643504 2 0.2804 0.925 0.016 0.924 0.060
#> SRR1643505 2 0.2804 0.925 0.016 0.924 0.060
#> SRR1643506 2 0.2804 0.925 0.016 0.924 0.060
#> SRR1643507 2 0.2804 0.925 0.016 0.924 0.060
#> SRR1643508 2 0.2804 0.925 0.016 0.924 0.060
#> SRR1643509 2 0.2804 0.925 0.016 0.924 0.060
#> SRR1643510 2 0.2804 0.925 0.016 0.924 0.060
#> SRR1643511 2 0.2804 0.925 0.016 0.924 0.060
#> SRR1643512 2 0.2804 0.925 0.016 0.924 0.060
#> SRR1643513 2 0.2804 0.925 0.016 0.924 0.060
#> SRR1643531 2 0.4897 0.904 0.016 0.812 0.172
#> SRR1643532 2 0.4897 0.904 0.016 0.812 0.172
#> SRR1643533 2 0.4897 0.904 0.016 0.812 0.172
#> SRR1643534 2 0.4897 0.904 0.016 0.812 0.172
#> SRR1643535 2 0.4897 0.904 0.016 0.812 0.172
#> SRR1643536 2 0.4897 0.904 0.016 0.812 0.172
#> SRR1643537 2 0.4897 0.904 0.016 0.812 0.172
#> SRR1643538 2 0.4897 0.904 0.016 0.812 0.172
#> SRR1643539 2 0.4897 0.904 0.016 0.812 0.172
#> SRR1643540 2 0.4897 0.904 0.016 0.812 0.172
#> SRR1643541 2 0.4897 0.904 0.016 0.812 0.172
#> SRR1643542 2 0.4897 0.904 0.016 0.812 0.172
#> SRR1643543 2 0.4897 0.904 0.016 0.812 0.172
#> SRR1643544 2 0.4897 0.904 0.016 0.812 0.172
#> SRR1643514 2 0.3769 0.923 0.016 0.880 0.104
#> SRR1643515 2 0.3769 0.923 0.016 0.880 0.104
#> SRR1643516 2 0.3769 0.923 0.016 0.880 0.104
#> SRR1643517 2 0.3769 0.923 0.016 0.880 0.104
#> SRR1643518 2 0.3769 0.923 0.016 0.880 0.104
#> SRR1643519 2 0.3769 0.923 0.016 0.880 0.104
#> SRR1643520 2 0.3769 0.923 0.016 0.880 0.104
#> SRR1643521 2 0.3769 0.923 0.016 0.880 0.104
#> SRR1643522 2 0.3769 0.923 0.016 0.880 0.104
#> SRR1643523 2 0.3769 0.923 0.016 0.880 0.104
#> SRR1643524 2 0.3769 0.923 0.016 0.880 0.104
#> SRR1643525 2 0.3769 0.923 0.016 0.880 0.104
#> SRR1643526 2 0.3769 0.923 0.016 0.880 0.104
#> SRR1643527 2 0.3769 0.923 0.016 0.880 0.104
#> SRR1643528 2 0.3769 0.923 0.016 0.880 0.104
#> SRR1643529 2 0.3769 0.923 0.016 0.880 0.104
#> SRR1643530 2 0.3769 0.923 0.016 0.880 0.104
#> SRR1643545 2 0.2031 0.929 0.016 0.952 0.032
#> SRR1643546 2 0.2031 0.929 0.016 0.952 0.032
#> SRR1643547 2 0.2031 0.929 0.016 0.952 0.032
#> SRR1643548 2 0.2031 0.929 0.016 0.952 0.032
#> SRR1643549 2 0.2031 0.929 0.016 0.952 0.032
#> SRR1643550 2 0.2031 0.929 0.016 0.952 0.032
#> SRR1643551 2 0.2031 0.929 0.016 0.952 0.032
#> SRR1643552 2 0.2031 0.929 0.016 0.952 0.032
#> SRR1643553 2 0.2031 0.929 0.016 0.952 0.032
#> SRR1643554 2 0.2031 0.929 0.016 0.952 0.032
#> SRR1643555 2 0.2031 0.929 0.016 0.952 0.032
#> SRR1643556 2 0.2031 0.929 0.016 0.952 0.032
#> SRR1643558 2 0.2031 0.929 0.016 0.952 0.032
#> SRR1643559 2 0.3921 0.921 0.016 0.872 0.112
#> SRR1643560 2 0.3921 0.921 0.016 0.872 0.112
#> SRR1643561 2 0.3921 0.921 0.016 0.872 0.112
#> SRR1643562 2 0.3921 0.921 0.016 0.872 0.112
#> SRR1643563 2 0.3921 0.921 0.016 0.872 0.112
#> SRR1643564 2 0.3921 0.921 0.016 0.872 0.112
#> SRR1643565 2 0.3921 0.921 0.016 0.872 0.112
#> SRR1643566 2 0.3921 0.921 0.016 0.872 0.112
#> SRR1643567 2 0.3921 0.921 0.016 0.872 0.112
#> SRR1643568 2 0.3921 0.921 0.016 0.872 0.112
#> SRR1643569 2 0.3921 0.921 0.016 0.872 0.112
#> SRR1643570 2 0.3921 0.921 0.016 0.872 0.112
#> SRR1643571 2 0.3921 0.921 0.016 0.872 0.112
#> SRR1643572 2 0.3921 0.921 0.016 0.872 0.112
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643168 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643169 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643170 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643171 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643172 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643173 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643174 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643175 1 0.4123 0.680 0.772 0.000 0.008 NA
#> SRR1643176 1 0.4123 0.680 0.772 0.000 0.008 NA
#> SRR1643177 1 0.4123 0.680 0.772 0.000 0.008 NA
#> SRR1643178 1 0.4123 0.680 0.772 0.000 0.008 NA
#> SRR1643180 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643181 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643182 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643183 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643184 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643185 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643186 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643187 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643188 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643189 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643190 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643191 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643192 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643193 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643194 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643195 1 0.4908 0.733 0.692 0.000 0.016 NA
#> SRR1643196 1 0.4908 0.733 0.692 0.000 0.016 NA
#> SRR1643197 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643198 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643199 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643200 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643201 1 0.4434 0.668 0.756 0.000 0.016 NA
#> SRR1643202 1 0.4434 0.668 0.756 0.000 0.016 NA
#> SRR1643203 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643204 1 0.4399 0.671 0.760 0.000 0.016 NA
#> SRR1643205 3 0.2647 0.988 0.120 0.000 0.880 NA
#> SRR1643206 3 0.2647 0.988 0.120 0.000 0.880 NA
#> SRR1643207 3 0.2647 0.988 0.120 0.000 0.880 NA
#> SRR1643208 3 0.2647 0.988 0.120 0.000 0.880 NA
#> SRR1643209 3 0.3638 0.987 0.120 0.000 0.848 NA
#> SRR1643210 3 0.3638 0.987 0.120 0.000 0.848 NA
#> SRR1643211 3 0.2647 0.988 0.120 0.000 0.880 NA
#> SRR1643212 3 0.2647 0.988 0.120 0.000 0.880 NA
#> SRR1643213 3 0.2647 0.988 0.120 0.000 0.880 NA
#> SRR1643214 3 0.2647 0.988 0.120 0.000 0.880 NA
#> SRR1643215 3 0.3991 0.985 0.120 0.000 0.832 NA
#> SRR1643216 3 0.3991 0.985 0.120 0.000 0.832 NA
#> SRR1643217 3 0.3991 0.985 0.120 0.000 0.832 NA
#> SRR1643218 3 0.3991 0.985 0.120 0.000 0.832 NA
#> SRR1643219 3 0.3991 0.985 0.120 0.000 0.832 NA
#> SRR1643220 3 0.3991 0.985 0.120 0.000 0.832 NA
#> SRR1643221 3 0.3335 0.988 0.120 0.000 0.860 NA
#> SRR1643222 3 0.3335 0.988 0.120 0.000 0.860 NA
#> SRR1643223 3 0.2647 0.988 0.120 0.000 0.880 NA
#> SRR1643224 3 0.2647 0.988 0.120 0.000 0.880 NA
#> SRR1643225 3 0.2647 0.988 0.120 0.000 0.880 NA
#> SRR1643226 3 0.2647 0.988 0.120 0.000 0.880 NA
#> SRR1643227 3 0.2976 0.988 0.120 0.000 0.872 NA
#> SRR1643228 3 0.2976 0.988 0.120 0.000 0.872 NA
#> SRR1643229 3 0.2976 0.988 0.120 0.000 0.872 NA
#> SRR1643230 3 0.2831 0.988 0.120 0.000 0.876 NA
#> SRR1643231 3 0.4301 0.981 0.120 0.000 0.816 NA
#> SRR1643232 3 0.2647 0.988 0.120 0.000 0.880 NA
#> SRR1643233 3 0.4227 0.982 0.120 0.000 0.820 NA
#> SRR1643234 3 0.4227 0.982 0.120 0.000 0.820 NA
#> SRR1643235 3 0.2647 0.988 0.120 0.000 0.880 NA
#> SRR1643236 3 0.2647 0.988 0.120 0.000 0.880 NA
#> SRR1643237 3 0.2647 0.988 0.120 0.000 0.880 NA
#> SRR1643238 3 0.3224 0.988 0.120 0.000 0.864 NA
#> SRR1643239 3 0.3224 0.988 0.120 0.000 0.864 NA
#> SRR1643240 3 0.3224 0.988 0.120 0.000 0.864 NA
#> SRR1643241 3 0.3224 0.988 0.120 0.000 0.864 NA
#> SRR1643242 3 0.4374 0.979 0.120 0.000 0.812 NA
#> SRR1643243 3 0.3991 0.984 0.120 0.000 0.832 NA
#> SRR1643245 3 0.3991 0.984 0.120 0.000 0.832 NA
#> SRR1643246 3 0.3991 0.984 0.120 0.000 0.832 NA
#> SRR1643247 3 0.3991 0.984 0.120 0.000 0.832 NA
#> SRR1643248 3 0.3821 0.986 0.120 0.000 0.840 NA
#> SRR1643249 3 0.4646 0.971 0.120 0.000 0.796 NA
#> SRR1643250 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643251 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643252 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643253 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643254 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643255 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643256 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643257 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643258 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643259 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643260 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643261 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643262 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643263 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643264 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643266 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643267 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643268 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643269 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643270 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643271 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643272 1 0.4072 0.798 0.748 0.000 0.000 NA
#> SRR1643273 1 0.2216 0.817 0.908 0.000 0.000 NA
#> SRR1643274 1 0.2216 0.817 0.908 0.000 0.000 NA
#> SRR1643275 1 0.2216 0.817 0.908 0.000 0.000 NA
#> SRR1643276 1 0.2216 0.817 0.908 0.000 0.000 NA
#> SRR1643277 1 0.2216 0.817 0.908 0.000 0.000 NA
#> SRR1643278 1 0.2216 0.817 0.908 0.000 0.000 NA
#> SRR1643279 1 0.2216 0.817 0.908 0.000 0.000 NA
#> SRR1643280 1 0.2216 0.817 0.908 0.000 0.000 NA
#> SRR1643281 1 0.2216 0.817 0.908 0.000 0.000 NA
#> SRR1643282 1 0.2216 0.817 0.908 0.000 0.000 NA
#> SRR1643283 1 0.2216 0.817 0.908 0.000 0.000 NA
#> SRR1643284 1 0.2216 0.817 0.908 0.000 0.000 NA
#> SRR1643285 1 0.2216 0.817 0.908 0.000 0.000 NA
#> SRR1643286 1 0.2216 0.817 0.908 0.000 0.000 NA
#> SRR1643287 1 0.4250 0.781 0.724 0.000 0.000 NA
#> SRR1643288 1 0.4250 0.781 0.724 0.000 0.000 NA
#> SRR1643289 1 0.4250 0.781 0.724 0.000 0.000 NA
#> SRR1643290 1 0.4250 0.781 0.724 0.000 0.000 NA
#> SRR1643291 1 0.4250 0.781 0.724 0.000 0.000 NA
#> SRR1643292 1 0.4250 0.781 0.724 0.000 0.000 NA
#> SRR1643293 1 0.4250 0.781 0.724 0.000 0.000 NA
#> SRR1643294 1 0.4250 0.781 0.724 0.000 0.000 NA
#> SRR1643295 1 0.4250 0.781 0.724 0.000 0.000 NA
#> SRR1643296 1 0.4250 0.781 0.724 0.000 0.000 NA
#> SRR1643297 1 0.4250 0.781 0.724 0.000 0.000 NA
#> SRR1643298 1 0.4250 0.781 0.724 0.000 0.000 NA
#> SRR1643299 1 0.4250 0.781 0.724 0.000 0.000 NA
#> SRR1643300 1 0.4250 0.781 0.724 0.000 0.000 NA
#> SRR1643301 1 0.2408 0.818 0.896 0.000 0.000 NA
#> SRR1643302 1 0.2408 0.818 0.896 0.000 0.000 NA
#> SRR1643303 1 0.2408 0.818 0.896 0.000 0.000 NA
#> SRR1643304 1 0.2408 0.818 0.896 0.000 0.000 NA
#> SRR1643305 1 0.2408 0.818 0.896 0.000 0.000 NA
#> SRR1643306 1 0.2408 0.818 0.896 0.000 0.000 NA
#> SRR1643307 1 0.2408 0.818 0.896 0.000 0.000 NA
#> SRR1643308 1 0.2408 0.818 0.896 0.000 0.000 NA
#> SRR1643309 1 0.2408 0.818 0.896 0.000 0.000 NA
#> SRR1643310 1 0.2408 0.818 0.896 0.000 0.000 NA
#> SRR1643311 1 0.2408 0.818 0.896 0.000 0.000 NA
#> SRR1643312 1 0.2408 0.818 0.896 0.000 0.000 NA
#> SRR1643313 1 0.2408 0.818 0.896 0.000 0.000 NA
#> SRR1643314 1 0.0188 0.802 0.996 0.000 0.000 NA
#> SRR1643315 1 0.0188 0.802 0.996 0.000 0.000 NA
#> SRR1643316 1 0.0188 0.802 0.996 0.000 0.000 NA
#> SRR1643317 1 0.0188 0.802 0.996 0.000 0.000 NA
#> SRR1643318 1 0.0188 0.802 0.996 0.000 0.000 NA
#> SRR1643319 1 0.0188 0.802 0.996 0.000 0.000 NA
#> SRR1643320 1 0.0188 0.802 0.996 0.000 0.000 NA
#> SRR1643321 1 0.0188 0.802 0.996 0.000 0.000 NA
#> SRR1643322 1 0.0188 0.802 0.996 0.000 0.000 NA
#> SRR1643323 1 0.0188 0.802 0.996 0.000 0.000 NA
#> SRR1643324 1 0.0188 0.802 0.996 0.000 0.000 NA
#> SRR1643325 1 0.0188 0.802 0.996 0.000 0.000 NA
#> SRR1643326 1 0.0188 0.802 0.996 0.000 0.000 NA
#> SRR1643327 1 0.0188 0.802 0.996 0.000 0.000 NA
#> SRR1643328 1 0.2197 0.775 0.916 0.000 0.004 NA
#> SRR1643329 1 0.2197 0.775 0.916 0.000 0.004 NA
#> SRR1643330 1 0.2197 0.775 0.916 0.000 0.004 NA
#> SRR1643331 1 0.2197 0.775 0.916 0.000 0.004 NA
#> SRR1643332 1 0.2197 0.775 0.916 0.000 0.004 NA
#> SRR1643333 1 0.2197 0.775 0.916 0.000 0.004 NA
#> SRR1643334 1 0.2197 0.775 0.916 0.000 0.004 NA
#> SRR1643335 1 0.2197 0.775 0.916 0.000 0.004 NA
#> SRR1643336 1 0.2197 0.775 0.916 0.000 0.004 NA
#> SRR1643337 1 0.2197 0.775 0.916 0.000 0.004 NA
#> SRR1643338 1 0.2197 0.775 0.916 0.000 0.004 NA
#> SRR1643339 1 0.2197 0.775 0.916 0.000 0.004 NA
#> SRR1643340 1 0.2197 0.775 0.916 0.000 0.004 NA
#> SRR1643341 1 0.2197 0.775 0.916 0.000 0.004 NA
#> SRR1643342 1 0.2197 0.775 0.916 0.000 0.004 NA
#> SRR1643343 1 0.2266 0.813 0.912 0.000 0.004 NA
#> SRR1643344 1 0.2266 0.813 0.912 0.000 0.004 NA
#> SRR1643345 1 0.2266 0.813 0.912 0.000 0.004 NA
#> SRR1643346 1 0.2266 0.813 0.912 0.000 0.004 NA
#> SRR1643347 1 0.2266 0.813 0.912 0.000 0.004 NA
#> SRR1643348 1 0.2266 0.813 0.912 0.000 0.004 NA
#> SRR1643349 1 0.2266 0.813 0.912 0.000 0.004 NA
#> SRR1643350 1 0.2266 0.813 0.912 0.000 0.004 NA
#> SRR1643351 1 0.2266 0.813 0.912 0.000 0.004 NA
#> SRR1643352 1 0.2266 0.813 0.912 0.000 0.004 NA
#> SRR1643353 1 0.2266 0.813 0.912 0.000 0.004 NA
#> SRR1643354 1 0.2266 0.813 0.912 0.000 0.004 NA
#> SRR1643355 1 0.2266 0.813 0.912 0.000 0.004 NA
#> SRR1643356 1 0.2266 0.813 0.912 0.000 0.004 NA
#> SRR1643357 1 0.2266 0.813 0.912 0.000 0.004 NA
#> SRR1643358 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643359 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643360 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643361 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643362 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643363 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643364 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643365 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643366 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643367 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643368 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643369 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643370 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643371 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643372 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643373 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643374 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643375 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643376 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643377 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643378 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643379 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643380 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643381 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643382 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643383 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643384 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643385 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643386 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643387 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643388 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643389 1 0.4103 0.797 0.744 0.000 0.000 NA
#> SRR1643390 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643391 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643392 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643393 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643394 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643395 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643396 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643397 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643398 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643399 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643400 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643401 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643402 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643403 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643404 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643405 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643406 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643407 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643408 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643409 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643410 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643411 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643412 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643413 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643414 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643415 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643416 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643417 1 0.1978 0.781 0.928 0.000 0.004 NA
#> SRR1643418 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643419 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643420 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643421 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643422 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643423 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643424 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643425 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643426 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643427 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643428 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643429 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643430 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643431 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643432 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643433 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643434 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643435 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643436 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643437 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643438 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643439 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643440 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643441 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643442 1 0.4605 0.748 0.664 0.000 0.000 NA
#> SRR1643443 2 0.4868 0.844 0.000 0.684 0.012 NA
#> SRR1643444 2 0.4868 0.844 0.000 0.684 0.012 NA
#> SRR1643445 2 0.4868 0.844 0.000 0.684 0.012 NA
#> SRR1643446 2 0.4868 0.844 0.000 0.684 0.012 NA
#> SRR1643447 2 0.4868 0.844 0.000 0.684 0.012 NA
#> SRR1643448 2 0.4868 0.844 0.000 0.684 0.012 NA
#> SRR1643449 2 0.4868 0.844 0.000 0.684 0.012 NA
#> SRR1643450 2 0.4868 0.844 0.000 0.684 0.012 NA
#> SRR1643451 2 0.4868 0.844 0.000 0.684 0.012 NA
#> SRR1643452 2 0.4868 0.844 0.000 0.684 0.012 NA
#> SRR1643453 2 0.4868 0.844 0.000 0.684 0.012 NA
#> SRR1643454 2 0.4868 0.844 0.000 0.684 0.012 NA
#> SRR1643455 2 0.4868 0.844 0.000 0.684 0.012 NA
#> SRR1643456 2 0.0336 0.880 0.000 0.992 0.000 NA
#> SRR1643457 2 0.0336 0.880 0.000 0.992 0.000 NA
#> SRR1643458 2 0.0336 0.880 0.000 0.992 0.000 NA
#> SRR1643459 2 0.0336 0.880 0.000 0.992 0.000 NA
#> SRR1643460 2 0.0336 0.880 0.000 0.992 0.000 NA
#> SRR1643461 2 0.0336 0.880 0.000 0.992 0.000 NA
#> SRR1643462 2 0.0336 0.880 0.000 0.992 0.000 NA
#> SRR1643463 2 0.0336 0.880 0.000 0.992 0.000 NA
#> SRR1643464 2 0.0336 0.880 0.000 0.992 0.000 NA
#> SRR1643466 2 0.0336 0.880 0.000 0.992 0.000 NA
#> SRR1643467 2 0.0336 0.880 0.000 0.992 0.000 NA
#> SRR1643468 2 0.0895 0.879 0.000 0.976 0.004 NA
#> SRR1643469 2 0.0895 0.879 0.000 0.976 0.004 NA
#> SRR1643470 2 0.0895 0.879 0.000 0.976 0.004 NA
#> SRR1643471 2 0.0895 0.879 0.000 0.976 0.004 NA
#> SRR1643472 2 0.0895 0.879 0.000 0.976 0.004 NA
#> SRR1643473 2 0.0895 0.879 0.000 0.976 0.004 NA
#> SRR1643474 2 0.0895 0.879 0.000 0.976 0.004 NA
#> SRR1643475 2 0.0895 0.879 0.000 0.976 0.004 NA
#> SRR1643477 2 0.0895 0.879 0.000 0.976 0.004 NA
#> SRR1643478 2 0.0895 0.879 0.000 0.976 0.004 NA
#> SRR1643479 2 0.0895 0.879 0.000 0.976 0.004 NA
#> SRR1643480 2 0.0895 0.879 0.000 0.976 0.004 NA
#> SRR1643481 2 0.1174 0.880 0.000 0.968 0.012 NA
#> SRR1643482 2 0.1174 0.880 0.000 0.968 0.012 NA
#> SRR1643483 2 0.1174 0.880 0.000 0.968 0.012 NA
#> SRR1643484 2 0.1174 0.880 0.000 0.968 0.012 NA
#> SRR1643485 2 0.1174 0.880 0.000 0.968 0.012 NA
#> SRR1643486 2 0.1174 0.880 0.000 0.968 0.012 NA
#> SRR1643487 2 0.1174 0.880 0.000 0.968 0.012 NA
#> SRR1643488 2 0.1174 0.880 0.000 0.968 0.012 NA
#> SRR1643489 2 0.1174 0.880 0.000 0.968 0.012 NA
#> SRR1643490 2 0.1174 0.880 0.000 0.968 0.012 NA
#> SRR1643491 2 0.1174 0.880 0.000 0.968 0.012 NA
#> SRR1643492 2 0.1174 0.880 0.000 0.968 0.012 NA
#> SRR1643493 2 0.1174 0.880 0.000 0.968 0.012 NA
#> SRR1643494 2 0.1174 0.880 0.000 0.968 0.012 NA
#> SRR1643495 2 0.1174 0.880 0.000 0.968 0.012 NA
#> SRR1643496 2 0.1174 0.880 0.000 0.968 0.012 NA
#> SRR1643497 2 0.3013 0.874 0.000 0.888 0.032 NA
#> SRR1643498 2 0.3013 0.874 0.000 0.888 0.032 NA
#> SRR1643499 2 0.3013 0.874 0.000 0.888 0.032 NA
#> SRR1643500 2 0.3013 0.874 0.000 0.888 0.032 NA
#> SRR1643501 2 0.3013 0.874 0.000 0.888 0.032 NA
#> SRR1643502 2 0.3013 0.874 0.000 0.888 0.032 NA
#> SRR1643503 2 0.3013 0.874 0.000 0.888 0.032 NA
#> SRR1643504 2 0.3013 0.874 0.000 0.888 0.032 NA
#> SRR1643505 2 0.3308 0.870 0.000 0.872 0.036 NA
#> SRR1643506 2 0.3013 0.874 0.000 0.888 0.032 NA
#> SRR1643507 2 0.3013 0.874 0.000 0.888 0.032 NA
#> SRR1643508 2 0.3013 0.874 0.000 0.888 0.032 NA
#> SRR1643509 2 0.3013 0.874 0.000 0.888 0.032 NA
#> SRR1643510 2 0.3013 0.874 0.000 0.888 0.032 NA
#> SRR1643511 2 0.3013 0.874 0.000 0.888 0.032 NA
#> SRR1643512 2 0.3013 0.874 0.000 0.888 0.032 NA
#> SRR1643513 2 0.3013 0.874 0.000 0.888 0.032 NA
#> SRR1643531 2 0.4741 0.842 0.000 0.668 0.004 NA
#> SRR1643532 2 0.4741 0.842 0.000 0.668 0.004 NA
#> SRR1643533 2 0.4741 0.842 0.000 0.668 0.004 NA
#> SRR1643534 2 0.4741 0.842 0.000 0.668 0.004 NA
#> SRR1643535 2 0.4857 0.842 0.000 0.668 0.008 NA
#> SRR1643536 2 0.4857 0.842 0.000 0.668 0.008 NA
#> SRR1643537 2 0.4857 0.842 0.000 0.668 0.008 NA
#> SRR1643538 2 0.4857 0.842 0.000 0.668 0.008 NA
#> SRR1643539 2 0.4741 0.842 0.000 0.668 0.004 NA
#> SRR1643540 2 0.4741 0.842 0.000 0.668 0.004 NA
#> SRR1643541 2 0.4741 0.842 0.000 0.668 0.004 NA
#> SRR1643542 2 0.4857 0.842 0.000 0.668 0.008 NA
#> SRR1643543 2 0.4857 0.842 0.000 0.668 0.008 NA
#> SRR1643544 2 0.4857 0.842 0.000 0.668 0.008 NA
#> SRR1643514 2 0.4204 0.877 0.000 0.788 0.020 NA
#> SRR1643515 2 0.4204 0.877 0.000 0.788 0.020 NA
#> SRR1643516 2 0.4204 0.877 0.000 0.788 0.020 NA
#> SRR1643517 2 0.4204 0.877 0.000 0.788 0.020 NA
#> SRR1643518 2 0.4204 0.877 0.000 0.788 0.020 NA
#> SRR1643519 2 0.4204 0.877 0.000 0.788 0.020 NA
#> SRR1643520 2 0.4204 0.877 0.000 0.788 0.020 NA
#> SRR1643521 2 0.4204 0.877 0.000 0.788 0.020 NA
#> SRR1643522 2 0.4204 0.877 0.000 0.788 0.020 NA
#> SRR1643523 2 0.4204 0.877 0.000 0.788 0.020 NA
#> SRR1643524 2 0.4204 0.877 0.000 0.788 0.020 NA
#> SRR1643525 2 0.4204 0.877 0.000 0.788 0.020 NA
#> SRR1643526 2 0.4204 0.877 0.000 0.788 0.020 NA
#> SRR1643527 2 0.4204 0.877 0.000 0.788 0.020 NA
#> SRR1643528 2 0.4204 0.877 0.000 0.788 0.020 NA
#> SRR1643529 2 0.4204 0.877 0.000 0.788 0.020 NA
#> SRR1643530 2 0.4204 0.877 0.000 0.788 0.020 NA
#> SRR1643545 2 0.2227 0.883 0.000 0.928 0.036 NA
#> SRR1643546 2 0.2227 0.883 0.000 0.928 0.036 NA
#> SRR1643547 2 0.2227 0.883 0.000 0.928 0.036 NA
#> SRR1643548 2 0.2227 0.883 0.000 0.928 0.036 NA
#> SRR1643549 2 0.2227 0.883 0.000 0.928 0.036 NA
#> SRR1643550 2 0.2227 0.883 0.000 0.928 0.036 NA
#> SRR1643551 2 0.2227 0.883 0.000 0.928 0.036 NA
#> SRR1643552 2 0.2227 0.883 0.000 0.928 0.036 NA
#> SRR1643553 2 0.2227 0.883 0.000 0.928 0.036 NA
#> SRR1643554 2 0.2227 0.883 0.000 0.928 0.036 NA
#> SRR1643555 2 0.2227 0.883 0.000 0.928 0.036 NA
#> SRR1643556 2 0.2227 0.883 0.000 0.928 0.036 NA
#> SRR1643558 2 0.2227 0.883 0.000 0.928 0.036 NA
#> SRR1643559 2 0.4364 0.872 0.000 0.764 0.016 NA
#> SRR1643560 2 0.4364 0.872 0.000 0.764 0.016 NA
#> SRR1643561 2 0.4364 0.872 0.000 0.764 0.016 NA
#> SRR1643562 2 0.4364 0.872 0.000 0.764 0.016 NA
#> SRR1643563 2 0.4364 0.872 0.000 0.764 0.016 NA
#> SRR1643564 2 0.4364 0.872 0.000 0.764 0.016 NA
#> SRR1643565 2 0.4364 0.872 0.000 0.764 0.016 NA
#> SRR1643566 2 0.4364 0.872 0.000 0.764 0.016 NA
#> SRR1643567 2 0.4364 0.872 0.000 0.764 0.016 NA
#> SRR1643568 2 0.4364 0.872 0.000 0.764 0.016 NA
#> SRR1643569 2 0.4364 0.872 0.000 0.764 0.016 NA
#> SRR1643570 2 0.4364 0.872 0.000 0.764 0.016 NA
#> SRR1643571 2 0.4364 0.872 0.000 0.764 0.016 NA
#> SRR1643572 2 0.4364 0.872 0.000 0.764 0.016 NA
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 1 0.4705 0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643168 1 0.4705 0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643169 1 0.4705 0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643170 1 0.4705 0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643171 1 0.4705 0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643172 1 0.4705 0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643173 1 0.4705 0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643174 1 0.4705 0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643175 1 0.4649 0.575 0.708 0.000 0.004 0.044 NA
#> SRR1643176 1 0.4649 0.575 0.708 0.000 0.004 0.044 NA
#> SRR1643177 1 0.4649 0.575 0.708 0.000 0.004 0.044 NA
#> SRR1643178 1 0.4649 0.575 0.708 0.000 0.004 0.044 NA
#> SRR1643180 1 0.4750 0.568 0.692 0.000 0.004 0.044 NA
#> SRR1643181 1 0.4750 0.568 0.692 0.000 0.004 0.044 NA
#> SRR1643182 1 0.4750 0.568 0.692 0.000 0.004 0.044 NA
#> SRR1643183 1 0.4750 0.568 0.692 0.000 0.004 0.044 NA
#> SRR1643184 1 0.4750 0.568 0.692 0.000 0.004 0.044 NA
#> SRR1643185 1 0.4750 0.568 0.692 0.000 0.004 0.044 NA
#> SRR1643186 1 0.4750 0.568 0.692 0.000 0.004 0.044 NA
#> SRR1643187 1 0.4793 0.567 0.692 0.000 0.004 0.048 NA
#> SRR1643188 1 0.4793 0.567 0.692 0.000 0.004 0.048 NA
#> SRR1643189 1 0.4793 0.567 0.692 0.000 0.004 0.048 NA
#> SRR1643190 1 0.4793 0.567 0.692 0.000 0.004 0.048 NA
#> SRR1643191 1 0.4705 0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643192 1 0.4705 0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643193 1 0.4750 0.567 0.692 0.000 0.004 0.044 NA
#> SRR1643194 1 0.4750 0.567 0.692 0.000 0.004 0.044 NA
#> SRR1643195 1 0.6581 0.330 0.500 0.000 0.004 0.232 NA
#> SRR1643196 1 0.6581 0.330 0.500 0.000 0.004 0.232 NA
#> SRR1643197 1 0.4726 0.569 0.696 0.000 0.004 0.044 NA
#> SRR1643198 1 0.4726 0.569 0.696 0.000 0.004 0.044 NA
#> SRR1643199 1 0.4705 0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643200 1 0.4705 0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643201 1 0.4793 0.567 0.692 0.000 0.004 0.048 NA
#> SRR1643202 1 0.4793 0.567 0.692 0.000 0.004 0.048 NA
#> SRR1643203 1 0.4793 0.567 0.692 0.000 0.004 0.048 NA
#> SRR1643204 1 0.4793 0.567 0.692 0.000 0.004 0.048 NA
#> SRR1643205 3 0.1717 0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643206 3 0.1717 0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643207 3 0.1717 0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643208 3 0.1717 0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643209 3 0.2173 0.983 0.052 0.000 0.920 0.016 NA
#> SRR1643210 3 0.2173 0.983 0.052 0.000 0.920 0.016 NA
#> SRR1643211 3 0.1717 0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643212 3 0.1717 0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643213 3 0.1717 0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643214 3 0.1717 0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643215 3 0.2173 0.983 0.052 0.000 0.920 0.016 NA
#> SRR1643216 3 0.2173 0.983 0.052 0.000 0.920 0.016 NA
#> SRR1643217 3 0.2173 0.983 0.052 0.000 0.920 0.016 NA
#> SRR1643218 3 0.2173 0.983 0.052 0.000 0.920 0.016 NA
#> SRR1643219 3 0.2173 0.983 0.052 0.000 0.920 0.016 NA
#> SRR1643220 3 0.2173 0.983 0.052 0.000 0.920 0.016 NA
#> SRR1643221 3 0.1430 0.987 0.052 0.000 0.944 0.004 NA
#> SRR1643222 3 0.1430 0.987 0.052 0.000 0.944 0.004 NA
#> SRR1643223 3 0.1717 0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643224 3 0.1717 0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643225 3 0.1717 0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643226 3 0.1717 0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643227 3 0.1591 0.987 0.052 0.000 0.940 0.004 NA
#> SRR1643228 3 0.1591 0.987 0.052 0.000 0.940 0.004 NA
#> SRR1643229 3 0.1591 0.987 0.052 0.000 0.940 0.004 NA
#> SRR1643230 3 0.1717 0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643231 3 0.3241 0.968 0.052 0.000 0.872 0.040 NA
#> SRR1643232 3 0.1717 0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643233 3 0.2917 0.974 0.052 0.000 0.888 0.032 NA
#> SRR1643234 3 0.2917 0.974 0.052 0.000 0.888 0.032 NA
#> SRR1643235 3 0.1717 0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643236 3 0.1591 0.987 0.052 0.000 0.940 0.004 NA
#> SRR1643237 3 0.1591 0.987 0.052 0.000 0.940 0.004 NA
#> SRR1643238 3 0.1557 0.987 0.052 0.000 0.940 0.008 NA
#> SRR1643239 3 0.1557 0.987 0.052 0.000 0.940 0.008 NA
#> SRR1643240 3 0.1557 0.987 0.052 0.000 0.940 0.008 NA
#> SRR1643241 3 0.1557 0.987 0.052 0.000 0.940 0.008 NA
#> SRR1643242 3 0.3394 0.964 0.052 0.000 0.864 0.040 NA
#> SRR1643243 3 0.2897 0.975 0.052 0.000 0.888 0.040 NA
#> SRR1643245 3 0.2897 0.975 0.052 0.000 0.888 0.040 NA
#> SRR1643246 3 0.2897 0.975 0.052 0.000 0.888 0.040 NA
#> SRR1643247 3 0.2897 0.975 0.052 0.000 0.888 0.040 NA
#> SRR1643248 3 0.1830 0.986 0.052 0.000 0.932 0.012 NA
#> SRR1643249 3 0.3806 0.950 0.056 0.000 0.840 0.040 NA
#> SRR1643250 4 0.4555 0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643251 4 0.4555 0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643252 4 0.4555 0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643253 4 0.4555 0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643254 4 0.4555 0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643255 4 0.4555 0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643256 4 0.4555 0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643257 4 0.4555 0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643258 4 0.4555 0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643259 4 0.4555 0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643260 4 0.4555 0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643261 4 0.4555 0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643262 4 0.4552 0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643263 4 0.4552 0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643264 4 0.4552 0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643266 4 0.4552 0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643267 4 0.4552 0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643268 4 0.4552 0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643269 4 0.4552 0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643270 4 0.4552 0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643271 4 0.4552 0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643272 4 0.4552 0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643273 1 0.4780 0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643274 1 0.4780 0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643275 1 0.4780 0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643276 1 0.4780 0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643277 1 0.4780 0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643278 1 0.4780 0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643279 1 0.4780 0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643280 1 0.4780 0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643281 1 0.4780 0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643282 1 0.4780 0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643283 1 0.4780 0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643284 1 0.4780 0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643285 1 0.4780 0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643286 1 0.4780 0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643287 4 0.5535 0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643288 4 0.5535 0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643289 4 0.5535 0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643290 4 0.5535 0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643291 4 0.5535 0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643292 4 0.5535 0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643293 4 0.5535 0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643294 4 0.5535 0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643295 4 0.5535 0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643296 4 0.5535 0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643297 4 0.5535 0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643298 4 0.5535 0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643299 4 0.5535 0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643300 4 0.5535 0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643301 1 0.4243 0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643302 1 0.4243 0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643303 1 0.4243 0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643304 1 0.4243 0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643305 1 0.4243 0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643306 1 0.4243 0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643307 1 0.4243 0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643308 1 0.4243 0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643309 1 0.4243 0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643310 1 0.4243 0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643311 1 0.4243 0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643312 1 0.4243 0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643313 1 0.4243 0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643314 1 0.2464 0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643315 1 0.2464 0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643316 1 0.2464 0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643317 1 0.2464 0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643318 1 0.2464 0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643319 1 0.2464 0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643320 1 0.2464 0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643321 1 0.2464 0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643322 1 0.2464 0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643323 1 0.2464 0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643324 1 0.2464 0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643325 1 0.2464 0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643326 1 0.2464 0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643327 1 0.2464 0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643328 1 0.0510 0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643329 1 0.0510 0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643330 1 0.0510 0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643331 1 0.0510 0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643332 1 0.0510 0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643333 1 0.0510 0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643334 1 0.0510 0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643335 1 0.0510 0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643336 1 0.0510 0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643337 1 0.0510 0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643338 1 0.0510 0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643339 1 0.0510 0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643340 1 0.0510 0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643341 1 0.0510 0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643342 1 0.0510 0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643343 1 0.4787 0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643344 1 0.4787 0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643345 1 0.4787 0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643346 1 0.4787 0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643347 1 0.4787 0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643348 1 0.4787 0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643349 1 0.4787 0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643350 1 0.4787 0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643351 1 0.4787 0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643352 1 0.4787 0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643353 1 0.4787 0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643354 1 0.4787 0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643355 1 0.4787 0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643356 1 0.4787 0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643357 1 0.4787 0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643358 4 0.4894 0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643359 4 0.4894 0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643360 4 0.4894 0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643361 4 0.4894 0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643362 4 0.4894 0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643363 4 0.4894 0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643364 4 0.4894 0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643365 4 0.4894 0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643366 4 0.4894 0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643367 4 0.4894 0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643368 4 0.4894 0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643369 4 0.4894 0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643370 4 0.4894 0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643371 4 0.4894 0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643372 4 0.4894 0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643373 4 0.4890 0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643374 4 0.4890 0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643375 4 0.4890 0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643376 4 0.4890 0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643377 4 0.4890 0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643378 4 0.4890 0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643379 4 0.4890 0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643380 4 0.4890 0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643381 4 0.4890 0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643382 4 0.4890 0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643383 4 0.4890 0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643384 4 0.4890 0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643385 4 0.4890 0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643386 4 0.4890 0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643387 4 0.4890 0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643388 4 0.4890 0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643389 4 0.4890 0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643390 1 0.0703 0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643391 1 0.0703 0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643392 1 0.0703 0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643393 1 0.0703 0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643394 1 0.0703 0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643395 1 0.0703 0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643396 1 0.0703 0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643397 1 0.0703 0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643398 1 0.0703 0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643399 1 0.0703 0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643400 1 0.0703 0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643401 1 0.0703 0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643402 1 0.0703 0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643403 1 0.0703 0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643404 1 0.0703 0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643405 1 0.1121 0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643406 1 0.1121 0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643407 1 0.1121 0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643408 1 0.1121 0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643409 1 0.1121 0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643410 1 0.1121 0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643411 1 0.1121 0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643412 1 0.1121 0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643413 1 0.1121 0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643414 1 0.1121 0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643415 1 0.1121 0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643416 1 0.1121 0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643417 1 0.1121 0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643418 4 0.5422 0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643419 4 0.5422 0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643420 4 0.5422 0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643421 4 0.5422 0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643422 4 0.5422 0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643423 4 0.5422 0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643424 4 0.5422 0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643425 4 0.5422 0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643426 4 0.5422 0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643427 4 0.5422 0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643428 4 0.5422 0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643429 4 0.5422 0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643430 4 0.5370 0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643431 4 0.5370 0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643432 4 0.5370 0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643433 4 0.5370 0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643434 4 0.5370 0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643435 4 0.5370 0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643436 4 0.5370 0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643437 4 0.5370 0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643438 4 0.5370 0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643439 4 0.5370 0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643440 4 0.5370 0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643441 4 0.5370 0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643442 4 0.5370 0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643443 2 0.3242 0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643444 2 0.3242 0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643445 2 0.3242 0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643446 2 0.3242 0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643447 2 0.3242 0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643448 2 0.3242 0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643449 2 0.3242 0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643450 2 0.3242 0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643451 2 0.3242 0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643452 2 0.3242 0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643453 2 0.3242 0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643454 2 0.3242 0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643455 2 0.3242 0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643456 2 0.4565 0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643457 2 0.4565 0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643458 2 0.4565 0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643459 2 0.4565 0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643460 2 0.4565 0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643461 2 0.4565 0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643462 2 0.4565 0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643463 2 0.4565 0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643464 2 0.4565 0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643466 2 0.4565 0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643467 2 0.4565 0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643468 2 0.4954 0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643469 2 0.4954 0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643470 2 0.4954 0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643471 2 0.4954 0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643472 2 0.4954 0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643473 2 0.4954 0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643474 2 0.4954 0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643475 2 0.4954 0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643477 2 0.4954 0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643478 2 0.4954 0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643479 2 0.4954 0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643480 2 0.4954 0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643481 2 0.4580 0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643482 2 0.4580 0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643483 2 0.4580 0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643484 2 0.4580 0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643485 2 0.4580 0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643486 2 0.4580 0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643487 2 0.4580 0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643488 2 0.4580 0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643489 2 0.4580 0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643490 2 0.4580 0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643491 2 0.4580 0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643492 2 0.4580 0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643493 2 0.4580 0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643494 2 0.4580 0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643495 2 0.4580 0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643496 2 0.4580 0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643497 2 0.5304 0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643498 2 0.5304 0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643499 2 0.5304 0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643500 2 0.5304 0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643501 2 0.5304 0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643502 2 0.5304 0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643503 2 0.5304 0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643504 2 0.5304 0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643505 2 0.5406 0.808 0.000 0.592 0.008 0.052 NA
#> SRR1643506 2 0.5304 0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643507 2 0.5304 0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643508 2 0.5304 0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643509 2 0.5304 0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643510 2 0.5304 0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643511 2 0.5304 0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643512 2 0.5304 0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643513 2 0.5304 0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643531 2 0.2321 0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643532 2 0.2321 0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643533 2 0.2321 0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643534 2 0.2321 0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643535 2 0.2321 0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643536 2 0.2321 0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643537 2 0.2321 0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643538 2 0.2321 0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643539 2 0.2321 0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643540 2 0.2321 0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643541 2 0.2321 0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643542 2 0.2321 0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643543 2 0.2321 0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643544 2 0.2321 0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643514 2 0.2568 0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643515 2 0.2568 0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643516 2 0.2568 0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643517 2 0.2568 0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643518 2 0.2568 0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643519 2 0.2568 0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643520 2 0.2568 0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643521 2 0.2568 0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643522 2 0.2568 0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643523 2 0.2568 0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643524 2 0.2568 0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643525 2 0.2568 0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643526 2 0.2568 0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643527 2 0.2568 0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643528 2 0.2568 0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643529 2 0.2568 0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643530 2 0.2568 0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643545 2 0.4752 0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643546 2 0.4752 0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643547 2 0.4752 0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643548 2 0.4752 0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643549 2 0.4752 0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643550 2 0.4752 0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643551 2 0.4752 0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643552 2 0.4752 0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643553 2 0.4752 0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643554 2 0.4752 0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643555 2 0.4752 0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643556 2 0.4752 0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643558 2 0.4752 0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643559 2 0.0613 0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643560 2 0.0613 0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643561 2 0.0613 0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643562 2 0.0613 0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643563 2 0.0613 0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643564 2 0.0613 0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643565 2 0.0613 0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643566 2 0.0613 0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643567 2 0.0613 0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643568 2 0.0613 0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643569 2 0.0613 0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643570 2 0.0613 0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643571 2 0.0613 0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643572 2 0.0613 0.797 0.000 0.984 0.004 0.008 NA
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 1 0.4357 -0.405 0.560 0.000 0.000 0.008 0.012 0.420
#> SRR1643168 1 0.4357 -0.405 0.560 0.000 0.000 0.008 0.012 0.420
#> SRR1643169 1 0.4357 -0.405 0.560 0.000 0.000 0.008 0.012 0.420
#> SRR1643170 1 0.4357 -0.405 0.560 0.000 0.000 0.008 0.012 0.420
#> SRR1643171 1 0.4357 -0.405 0.560 0.000 0.000 0.012 0.008 0.420
#> SRR1643172 1 0.4357 -0.405 0.560 0.000 0.000 0.012 0.008 0.420
#> SRR1643173 1 0.4357 -0.405 0.560 0.000 0.000 0.012 0.008 0.420
#> SRR1643174 1 0.4357 -0.405 0.560 0.000 0.000 0.012 0.008 0.420
#> SRR1643175 1 0.4546 -0.406 0.572 0.000 0.000 0.008 0.024 0.396
#> SRR1643176 1 0.4546 -0.406 0.572 0.000 0.000 0.008 0.024 0.396
#> SRR1643177 1 0.4546 -0.406 0.572 0.000 0.000 0.008 0.024 0.396
#> SRR1643178 1 0.4546 -0.406 0.572 0.000 0.000 0.008 0.024 0.396
#> SRR1643180 1 0.4579 -0.406 0.560 0.000 0.008 0.012 0.008 0.412
#> SRR1643181 1 0.4579 -0.406 0.560 0.000 0.008 0.012 0.008 0.412
#> SRR1643182 1 0.4579 -0.406 0.560 0.000 0.008 0.012 0.008 0.412
#> SRR1643183 1 0.4579 -0.406 0.560 0.000 0.008 0.012 0.008 0.412
#> SRR1643184 1 0.4579 -0.406 0.560 0.000 0.008 0.012 0.008 0.412
#> SRR1643185 1 0.4579 -0.406 0.560 0.000 0.008 0.012 0.008 0.412
#> SRR1643186 1 0.4579 -0.406 0.560 0.000 0.008 0.012 0.008 0.412
#> SRR1643187 1 0.4659 -0.415 0.556 0.000 0.000 0.012 0.024 0.408
#> SRR1643188 1 0.4659 -0.415 0.556 0.000 0.000 0.012 0.024 0.408
#> SRR1643189 1 0.4659 -0.415 0.556 0.000 0.000 0.012 0.024 0.408
#> SRR1643190 1 0.4659 -0.415 0.556 0.000 0.000 0.012 0.024 0.408
#> SRR1643191 1 0.4433 -0.410 0.560 0.000 0.000 0.008 0.016 0.416
#> SRR1643192 1 0.4433 -0.410 0.560 0.000 0.000 0.008 0.016 0.416
#> SRR1643193 1 0.4280 -0.412 0.556 0.000 0.000 0.008 0.008 0.428
#> SRR1643194 1 0.4280 -0.412 0.556 0.000 0.000 0.008 0.008 0.428
#> SRR1643195 6 0.6402 1.000 0.368 0.000 0.000 0.188 0.028 0.416
#> SRR1643196 6 0.6402 1.000 0.368 0.000 0.000 0.188 0.028 0.416
#> SRR1643197 1 0.4561 -0.408 0.564 0.000 0.000 0.008 0.024 0.404
#> SRR1643198 1 0.4561 -0.408 0.564 0.000 0.000 0.008 0.024 0.404
#> SRR1643199 1 0.4364 -0.410 0.556 0.000 0.000 0.008 0.012 0.424
#> SRR1643200 1 0.4364 -0.410 0.556 0.000 0.000 0.008 0.012 0.424
#> SRR1643201 1 0.4582 -0.421 0.552 0.000 0.000 0.008 0.024 0.416
#> SRR1643202 1 0.4582 -0.421 0.552 0.000 0.000 0.008 0.024 0.416
#> SRR1643203 1 0.4659 -0.415 0.556 0.000 0.000 0.012 0.024 0.408
#> SRR1643204 1 0.4659 -0.415 0.556 0.000 0.000 0.012 0.024 0.408
#> SRR1643205 3 0.1542 0.968 0.052 0.000 0.936 0.004 0.008 0.000
#> SRR1643206 3 0.1542 0.968 0.052 0.000 0.936 0.004 0.008 0.000
#> SRR1643207 3 0.1542 0.968 0.052 0.000 0.936 0.004 0.008 0.000
#> SRR1643208 3 0.1542 0.968 0.052 0.000 0.936 0.004 0.008 0.000
#> SRR1643209 3 0.2693 0.965 0.052 0.000 0.884 0.000 0.028 0.036
#> SRR1643210 3 0.2693 0.965 0.052 0.000 0.884 0.000 0.028 0.036
#> SRR1643211 3 0.1429 0.969 0.052 0.000 0.940 0.004 0.004 0.000
#> SRR1643212 3 0.1429 0.969 0.052 0.000 0.940 0.004 0.004 0.000
#> SRR1643213 3 0.1429 0.969 0.052 0.000 0.940 0.004 0.004 0.000
#> SRR1643214 3 0.1429 0.969 0.052 0.000 0.940 0.004 0.004 0.000
#> SRR1643215 3 0.2831 0.964 0.052 0.000 0.876 0.000 0.028 0.044
#> SRR1643216 3 0.2831 0.964 0.052 0.000 0.876 0.000 0.028 0.044
#> SRR1643217 3 0.2831 0.964 0.052 0.000 0.876 0.000 0.028 0.044
#> SRR1643218 3 0.2831 0.964 0.052 0.000 0.876 0.000 0.028 0.044
#> SRR1643219 3 0.2831 0.964 0.052 0.000 0.876 0.000 0.028 0.044
#> SRR1643220 3 0.2831 0.964 0.052 0.000 0.876 0.000 0.028 0.044
#> SRR1643221 3 0.2082 0.971 0.052 0.000 0.916 0.004 0.008 0.020
#> SRR1643222 3 0.2082 0.971 0.052 0.000 0.916 0.004 0.008 0.020
#> SRR1643223 3 0.2014 0.968 0.052 0.000 0.920 0.012 0.008 0.008
#> SRR1643224 3 0.2014 0.968 0.052 0.000 0.920 0.012 0.008 0.008
#> SRR1643225 3 0.2014 0.968 0.052 0.000 0.920 0.012 0.008 0.008
#> SRR1643226 3 0.2014 0.968 0.052 0.000 0.920 0.012 0.008 0.008
#> SRR1643227 3 0.2195 0.967 0.052 0.000 0.912 0.008 0.008 0.020
#> SRR1643228 3 0.2195 0.967 0.052 0.000 0.912 0.008 0.008 0.020
#> SRR1643229 3 0.1994 0.969 0.052 0.000 0.920 0.004 0.008 0.016
#> SRR1643230 3 0.1799 0.968 0.052 0.000 0.928 0.008 0.008 0.004
#> SRR1643231 3 0.3887 0.948 0.052 0.000 0.820 0.012 0.044 0.072
#> SRR1643232 3 0.1542 0.968 0.052 0.000 0.936 0.004 0.008 0.000
#> SRR1643233 3 0.3596 0.951 0.052 0.000 0.832 0.004 0.036 0.076
#> SRR1643234 3 0.3596 0.951 0.052 0.000 0.832 0.004 0.036 0.076
#> SRR1643235 3 0.1542 0.968 0.052 0.000 0.936 0.004 0.008 0.000
#> SRR1643236 3 0.1429 0.969 0.052 0.000 0.940 0.004 0.004 0.000
#> SRR1643237 3 0.1429 0.969 0.052 0.000 0.940 0.004 0.004 0.000
#> SRR1643238 3 0.2266 0.969 0.052 0.000 0.908 0.004 0.012 0.024
#> SRR1643239 3 0.2266 0.969 0.052 0.000 0.908 0.004 0.012 0.024
#> SRR1643240 3 0.2266 0.969 0.052 0.000 0.908 0.004 0.012 0.024
#> SRR1643241 3 0.2266 0.969 0.052 0.000 0.908 0.004 0.012 0.024
#> SRR1643242 3 0.3959 0.943 0.052 0.000 0.812 0.008 0.048 0.080
#> SRR1643243 3 0.3452 0.956 0.052 0.000 0.844 0.008 0.028 0.068
#> SRR1643245 3 0.3452 0.956 0.052 0.000 0.844 0.008 0.028 0.068
#> SRR1643246 3 0.3452 0.956 0.052 0.000 0.844 0.008 0.028 0.068
#> SRR1643247 3 0.3452 0.956 0.052 0.000 0.844 0.008 0.028 0.068
#> SRR1643248 3 0.2827 0.968 0.052 0.000 0.880 0.004 0.024 0.040
#> SRR1643249 3 0.4108 0.936 0.052 0.000 0.800 0.008 0.048 0.092
#> SRR1643250 4 0.4519 0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643251 4 0.4519 0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643252 4 0.4519 0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643253 4 0.4519 0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643254 4 0.4519 0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643255 4 0.4519 0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643256 4 0.4519 0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643257 4 0.4519 0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643258 4 0.4519 0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643259 4 0.4519 0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643260 4 0.4519 0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643261 4 0.4519 0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643262 4 0.4436 0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643263 4 0.4436 0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643264 4 0.4436 0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643266 4 0.4436 0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643267 4 0.4436 0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643268 4 0.4436 0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643269 4 0.4436 0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643270 4 0.4436 0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643271 4 0.4436 0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643272 4 0.4436 0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643273 1 0.5724 0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643274 1 0.5724 0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643275 1 0.5724 0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643276 1 0.5724 0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643277 1 0.5724 0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643278 1 0.5724 0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643279 1 0.5724 0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643280 1 0.5724 0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643281 1 0.5724 0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643282 1 0.5724 0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643283 1 0.5724 0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643284 1 0.5724 0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643285 1 0.5724 0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643286 1 0.5724 0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643287 4 0.6744 0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643288 4 0.6744 0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643289 4 0.6744 0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643290 4 0.6744 0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643291 4 0.6744 0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643292 4 0.6744 0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643293 4 0.6744 0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643294 4 0.6744 0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643295 4 0.6744 0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643296 4 0.6744 0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643297 4 0.6744 0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643298 4 0.6744 0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643299 4 0.6744 0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643300 4 0.6744 0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643301 1 0.4643 0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643302 1 0.4643 0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643303 1 0.4643 0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643304 1 0.4643 0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643305 1 0.4643 0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643306 1 0.4643 0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643307 1 0.4643 0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643308 1 0.4643 0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643309 1 0.4643 0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643310 1 0.4643 0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643311 1 0.4643 0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643312 1 0.4643 0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643313 1 0.4643 0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643314 1 0.2894 0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643315 1 0.2894 0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643316 1 0.2894 0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643317 1 0.2894 0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643318 1 0.2894 0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643319 1 0.2842 0.460 0.868 0.000 0.000 0.084 0.020 0.028
#> SRR1643320 1 0.2894 0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643321 1 0.2894 0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643322 1 0.2894 0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643323 1 0.2894 0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643324 1 0.2894 0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643325 1 0.2894 0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643326 1 0.2894 0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643327 1 0.2894 0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643328 1 0.0713 0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643329 1 0.0713 0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643330 1 0.0713 0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643331 1 0.0713 0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643332 1 0.0713 0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643333 1 0.0713 0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643334 1 0.0713 0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643335 1 0.0713 0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643336 1 0.0713 0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643337 1 0.0713 0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643338 1 0.0713 0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643339 1 0.0713 0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643340 1 0.0713 0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643341 1 0.0713 0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643342 1 0.0713 0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643343 1 0.5312 0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643344 1 0.5312 0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643345 1 0.5312 0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643346 1 0.5312 0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643347 1 0.5312 0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643348 1 0.5312 0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643349 1 0.5312 0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643350 1 0.5312 0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643351 1 0.5312 0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643352 1 0.5312 0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643353 1 0.5312 0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643354 1 0.5312 0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643355 1 0.5312 0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643356 1 0.5312 0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643357 1 0.5312 0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643358 4 0.4800 0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643359 4 0.4800 0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643360 4 0.4800 0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643361 4 0.4800 0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643362 4 0.4800 0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643363 4 0.4800 0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643364 4 0.4800 0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643365 4 0.4800 0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643366 4 0.4800 0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643367 4 0.4800 0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643368 4 0.4800 0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643369 4 0.4800 0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643370 4 0.4800 0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643371 4 0.4800 0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643372 4 0.4800 0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643373 4 0.4882 0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643374 4 0.4882 0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643375 4 0.4882 0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643376 4 0.4882 0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643377 4 0.4882 0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643378 4 0.4882 0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643379 4 0.4882 0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643380 4 0.4882 0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643381 4 0.4873 0.727 0.376 0.000 0.000 0.572 0.016 0.036
#> SRR1643382 4 0.4882 0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643383 4 0.4882 0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643384 4 0.4882 0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643385 4 0.4882 0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643386 4 0.4882 0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643387 4 0.4882 0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643388 4 0.4882 0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643389 4 0.4882 0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643390 1 0.1049 0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643391 1 0.1049 0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643392 1 0.1049 0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643393 1 0.1049 0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643394 1 0.1049 0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643395 1 0.1049 0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643396 1 0.1049 0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643397 1 0.1049 0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643398 1 0.1049 0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643399 1 0.1049 0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643400 1 0.1049 0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643401 1 0.1049 0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643402 1 0.1049 0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643403 1 0.1049 0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643404 1 0.1049 0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643405 1 0.1624 0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643406 1 0.1624 0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643407 1 0.1624 0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643408 1 0.1624 0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643409 1 0.1624 0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643410 1 0.1624 0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643411 1 0.1624 0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643412 1 0.1624 0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643413 1 0.1624 0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643414 1 0.1624 0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643415 1 0.1624 0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643416 1 0.1624 0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643417 1 0.1624 0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643418 4 0.5393 0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643419 4 0.5393 0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643420 4 0.5393 0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643421 4 0.5393 0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643422 4 0.5393 0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643423 4 0.5393 0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643424 4 0.5393 0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643425 4 0.5393 0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643426 4 0.5393 0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643427 4 0.5393 0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643428 4 0.5393 0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643429 4 0.5393 0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643430 4 0.5283 0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643431 4 0.5283 0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643432 4 0.5283 0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643433 4 0.5283 0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643434 4 0.5283 0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643435 4 0.5283 0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643436 4 0.5283 0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643437 4 0.5283 0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643438 4 0.5283 0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643439 4 0.5283 0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643440 4 0.5283 0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643441 4 0.5283 0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643442 4 0.5283 0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643443 5 0.5365 0.870 0.000 0.428 0.012 0.024 0.504 0.032
#> SRR1643444 5 0.5365 0.870 0.000 0.428 0.012 0.024 0.504 0.032
#> SRR1643445 5 0.5365 0.870 0.000 0.428 0.012 0.024 0.504 0.032
#> SRR1643446 5 0.5344 0.870 0.000 0.428 0.008 0.028 0.504 0.032
#> SRR1643447 5 0.5344 0.870 0.000 0.428 0.008 0.028 0.504 0.032
#> SRR1643448 5 0.5365 0.870 0.000 0.428 0.012 0.024 0.504 0.032
#> SRR1643449 5 0.5365 0.870 0.000 0.428 0.012 0.024 0.504 0.032
#> SRR1643450 5 0.5344 0.870 0.000 0.428 0.008 0.028 0.504 0.032
#> SRR1643451 5 0.5344 0.870 0.000 0.428 0.008 0.028 0.504 0.032
#> SRR1643452 5 0.5365 0.870 0.000 0.428 0.012 0.024 0.504 0.032
#> SRR1643453 5 0.5344 0.870 0.000 0.428 0.008 0.028 0.504 0.032
#> SRR1643454 5 0.5344 0.870 0.000 0.428 0.008 0.028 0.504 0.032
#> SRR1643455 5 0.5344 0.870 0.000 0.428 0.008 0.028 0.504 0.032
#> SRR1643456 2 0.0405 0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643457 2 0.0405 0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643458 2 0.0405 0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643459 2 0.0405 0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643460 2 0.0405 0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643461 2 0.0405 0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643462 2 0.0405 0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643463 2 0.0405 0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643464 2 0.0405 0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643466 2 0.0405 0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643467 2 0.0405 0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643468 2 0.1799 0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643469 2 0.1799 0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643470 2 0.1799 0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643471 2 0.1799 0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643472 2 0.1799 0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643473 2 0.1799 0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643474 2 0.1799 0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643475 2 0.1799 0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643477 2 0.1799 0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643478 2 0.1799 0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643479 2 0.1799 0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643480 2 0.1799 0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643481 2 0.0862 0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643482 2 0.0862 0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643483 2 0.0862 0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643484 2 0.0862 0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643485 2 0.0862 0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643486 2 0.0862 0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643487 2 0.0862 0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643488 2 0.0862 0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643489 2 0.0862 0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643490 2 0.0862 0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643491 2 0.0862 0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643492 2 0.0862 0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643493 2 0.0862 0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643494 2 0.0862 0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643495 2 0.0862 0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643496 2 0.0862 0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643497 2 0.4342 0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643498 2 0.4342 0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643499 2 0.4342 0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643500 2 0.4342 0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643501 2 0.4342 0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643502 2 0.4342 0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643503 2 0.4342 0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643504 2 0.4342 0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643505 2 0.4522 0.439 0.000 0.752 0.000 0.048 0.132 0.068
#> SRR1643506 2 0.4342 0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643507 2 0.4342 0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643508 2 0.4342 0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643509 2 0.4342 0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643510 2 0.4342 0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643511 2 0.4342 0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643512 2 0.4342 0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643513 2 0.4342 0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643531 5 0.5659 0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643532 5 0.5659 0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643533 5 0.5659 0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643534 5 0.5659 0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643535 5 0.5659 0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643536 5 0.5659 0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643537 5 0.5659 0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643538 5 0.5659 0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643539 5 0.5659 0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643540 5 0.5659 0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643541 5 0.5659 0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643542 5 0.5659 0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643543 5 0.5659 0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643544 5 0.5659 0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643514 2 0.4982 -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643515 2 0.4982 -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643516 2 0.4982 -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643517 2 0.4982 -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643518 2 0.4982 -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643519 2 0.4982 -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643520 2 0.4982 -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643521 2 0.4982 -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643522 2 0.4982 -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643523 2 0.4982 -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643524 2 0.4982 -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643525 2 0.4982 -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643526 2 0.4982 -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643527 2 0.4982 -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643528 2 0.4982 -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643529 2 0.4982 -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643530 2 0.4982 -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643545 2 0.2821 0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643546 2 0.2821 0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643547 2 0.2821 0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643548 2 0.2821 0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643549 2 0.2821 0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643550 2 0.2821 0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643551 2 0.2821 0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643552 2 0.2821 0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643553 2 0.2821 0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643554 2 0.2821 0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643555 2 0.2821 0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643556 2 0.2821 0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643558 2 0.2821 0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643559 2 0.3993 -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643560 2 0.3993 -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643561 2 0.3993 -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643562 2 0.3993 -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643563 2 0.3993 -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643564 2 0.3993 -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643565 2 0.3993 -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643566 2 0.3993 -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643567 2 0.3993 -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643568 2 0.3993 -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643569 2 0.3993 -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643570 2 0.3993 -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643571 2 0.3993 -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643572 2 0.3993 -0.541 0.000 0.520 0.000 0.004 0.476 0.000
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["SD", "skmeans"]
# you can also extract it by
# res = res_list["SD:skmeans"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'SD' method.
#> Subgroups are detected by 'skmeans' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 4.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.4350 0.566 0.566
#> 3 3 1.000 0.983 0.988 0.3061 0.874 0.777
#> 4 4 0.943 0.947 0.963 0.2597 0.840 0.637
#> 5 5 0.845 0.884 0.896 0.0605 0.953 0.834
#> 6 6 0.799 0.824 0.840 0.0425 0.974 0.888
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 4
#> attr(,"optional")
#> [1] 2 3
There is also optional best \(k\) = 2 3 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.1860 0.957 0.948 0 0.052
#> SRR1643168 1 0.1860 0.957 0.948 0 0.052
#> SRR1643169 1 0.1860 0.957 0.948 0 0.052
#> SRR1643170 1 0.1860 0.957 0.948 0 0.052
#> SRR1643171 1 0.2066 0.953 0.940 0 0.060
#> SRR1643172 1 0.2066 0.953 0.940 0 0.060
#> SRR1643173 1 0.2066 0.953 0.940 0 0.060
#> SRR1643174 1 0.2066 0.953 0.940 0 0.060
#> SRR1643175 1 0.0592 0.976 0.988 0 0.012
#> SRR1643176 1 0.0592 0.976 0.988 0 0.012
#> SRR1643177 1 0.0592 0.976 0.988 0 0.012
#> SRR1643178 1 0.0592 0.976 0.988 0 0.012
#> SRR1643180 1 0.2066 0.953 0.940 0 0.060
#> SRR1643181 1 0.2066 0.953 0.940 0 0.060
#> SRR1643182 1 0.2066 0.953 0.940 0 0.060
#> SRR1643183 1 0.2066 0.953 0.940 0 0.060
#> SRR1643184 1 0.2066 0.953 0.940 0 0.060
#> SRR1643185 1 0.2066 0.953 0.940 0 0.060
#> SRR1643186 1 0.2066 0.953 0.940 0 0.060
#> SRR1643187 1 0.0237 0.979 0.996 0 0.004
#> SRR1643188 1 0.0237 0.979 0.996 0 0.004
#> SRR1643189 1 0.0237 0.979 0.996 0 0.004
#> SRR1643190 1 0.0237 0.979 0.996 0 0.004
#> SRR1643191 1 0.2066 0.953 0.940 0 0.060
#> SRR1643192 1 0.2066 0.953 0.940 0 0.060
#> SRR1643193 1 0.0237 0.979 0.996 0 0.004
#> SRR1643194 1 0.0237 0.979 0.996 0 0.004
#> SRR1643195 1 0.0000 0.979 1.000 0 0.000
#> SRR1643196 1 0.0000 0.979 1.000 0 0.000
#> SRR1643197 1 0.1860 0.957 0.948 0 0.052
#> SRR1643198 1 0.1860 0.957 0.948 0 0.052
#> SRR1643199 1 0.1860 0.957 0.948 0 0.052
#> SRR1643200 1 0.1860 0.957 0.948 0 0.052
#> SRR1643201 1 0.0000 0.979 1.000 0 0.000
#> SRR1643202 1 0.0000 0.979 1.000 0 0.000
#> SRR1643203 1 0.1163 0.969 0.972 0 0.028
#> SRR1643204 1 0.1163 0.969 0.972 0 0.028
#> SRR1643205 3 0.0000 1.000 0.000 0 1.000
#> SRR1643206 3 0.0000 1.000 0.000 0 1.000
#> SRR1643207 3 0.0000 1.000 0.000 0 1.000
#> SRR1643208 3 0.0000 1.000 0.000 0 1.000
#> SRR1643209 3 0.0000 1.000 0.000 0 1.000
#> SRR1643210 3 0.0000 1.000 0.000 0 1.000
#> SRR1643211 3 0.0000 1.000 0.000 0 1.000
#> SRR1643212 3 0.0000 1.000 0.000 0 1.000
#> SRR1643213 3 0.0000 1.000 0.000 0 1.000
#> SRR1643214 3 0.0000 1.000 0.000 0 1.000
#> SRR1643215 3 0.0000 1.000 0.000 0 1.000
#> SRR1643216 3 0.0000 1.000 0.000 0 1.000
#> SRR1643217 3 0.0000 1.000 0.000 0 1.000
#> SRR1643218 3 0.0000 1.000 0.000 0 1.000
#> SRR1643219 3 0.0000 1.000 0.000 0 1.000
#> SRR1643220 3 0.0000 1.000 0.000 0 1.000
#> SRR1643221 3 0.0000 1.000 0.000 0 1.000
#> SRR1643222 3 0.0000 1.000 0.000 0 1.000
#> SRR1643223 3 0.0000 1.000 0.000 0 1.000
#> SRR1643224 3 0.0000 1.000 0.000 0 1.000
#> SRR1643225 3 0.0000 1.000 0.000 0 1.000
#> SRR1643226 3 0.0000 1.000 0.000 0 1.000
#> SRR1643227 3 0.0000 1.000 0.000 0 1.000
#> SRR1643228 3 0.0000 1.000 0.000 0 1.000
#> SRR1643229 3 0.0000 1.000 0.000 0 1.000
#> SRR1643230 3 0.0000 1.000 0.000 0 1.000
#> SRR1643231 3 0.0000 1.000 0.000 0 1.000
#> SRR1643232 3 0.0000 1.000 0.000 0 1.000
#> SRR1643233 3 0.0000 1.000 0.000 0 1.000
#> SRR1643234 3 0.0000 1.000 0.000 0 1.000
#> SRR1643235 3 0.0000 1.000 0.000 0 1.000
#> SRR1643236 3 0.0000 1.000 0.000 0 1.000
#> SRR1643237 3 0.0000 1.000 0.000 0 1.000
#> SRR1643238 3 0.0000 1.000 0.000 0 1.000
#> SRR1643239 3 0.0000 1.000 0.000 0 1.000
#> SRR1643240 3 0.0000 1.000 0.000 0 1.000
#> SRR1643241 3 0.0000 1.000 0.000 0 1.000
#> SRR1643242 3 0.0000 1.000 0.000 0 1.000
#> SRR1643243 3 0.0000 1.000 0.000 0 1.000
#> SRR1643245 3 0.0000 1.000 0.000 0 1.000
#> SRR1643246 3 0.0000 1.000 0.000 0 1.000
#> SRR1643247 3 0.0000 1.000 0.000 0 1.000
#> SRR1643248 3 0.0000 1.000 0.000 0 1.000
#> SRR1643249 3 0.0000 1.000 0.000 0 1.000
#> SRR1643250 1 0.0000 0.979 1.000 0 0.000
#> SRR1643251 1 0.0000 0.979 1.000 0 0.000
#> SRR1643252 1 0.0000 0.979 1.000 0 0.000
#> SRR1643253 1 0.0000 0.979 1.000 0 0.000
#> SRR1643254 1 0.0000 0.979 1.000 0 0.000
#> SRR1643255 1 0.0000 0.979 1.000 0 0.000
#> SRR1643256 1 0.0000 0.979 1.000 0 0.000
#> SRR1643257 1 0.0000 0.979 1.000 0 0.000
#> SRR1643258 1 0.0000 0.979 1.000 0 0.000
#> SRR1643259 1 0.0000 0.979 1.000 0 0.000
#> SRR1643260 1 0.0000 0.979 1.000 0 0.000
#> SRR1643261 1 0.0000 0.979 1.000 0 0.000
#> SRR1643262 1 0.0000 0.979 1.000 0 0.000
#> SRR1643263 1 0.0000 0.979 1.000 0 0.000
#> SRR1643264 1 0.0000 0.979 1.000 0 0.000
#> SRR1643266 1 0.0000 0.979 1.000 0 0.000
#> SRR1643267 1 0.0000 0.979 1.000 0 0.000
#> SRR1643268 1 0.0000 0.979 1.000 0 0.000
#> SRR1643269 1 0.0000 0.979 1.000 0 0.000
#> SRR1643270 1 0.0000 0.979 1.000 0 0.000
#> SRR1643271 1 0.0000 0.979 1.000 0 0.000
#> SRR1643272 1 0.0000 0.979 1.000 0 0.000
#> SRR1643273 1 0.0000 0.979 1.000 0 0.000
#> SRR1643274 1 0.0000 0.979 1.000 0 0.000
#> SRR1643275 1 0.0000 0.979 1.000 0 0.000
#> SRR1643276 1 0.0000 0.979 1.000 0 0.000
#> SRR1643277 1 0.0000 0.979 1.000 0 0.000
#> SRR1643278 1 0.0000 0.979 1.000 0 0.000
#> SRR1643279 1 0.0000 0.979 1.000 0 0.000
#> SRR1643280 1 0.0000 0.979 1.000 0 0.000
#> SRR1643281 1 0.0000 0.979 1.000 0 0.000
#> SRR1643282 1 0.0000 0.979 1.000 0 0.000
#> SRR1643283 1 0.0000 0.979 1.000 0 0.000
#> SRR1643284 1 0.0000 0.979 1.000 0 0.000
#> SRR1643285 1 0.0000 0.979 1.000 0 0.000
#> SRR1643286 1 0.0000 0.979 1.000 0 0.000
#> SRR1643287 1 0.0000 0.979 1.000 0 0.000
#> SRR1643288 1 0.0000 0.979 1.000 0 0.000
#> SRR1643289 1 0.0000 0.979 1.000 0 0.000
#> SRR1643290 1 0.0000 0.979 1.000 0 0.000
#> SRR1643291 1 0.0000 0.979 1.000 0 0.000
#> SRR1643292 1 0.0000 0.979 1.000 0 0.000
#> SRR1643293 1 0.0000 0.979 1.000 0 0.000
#> SRR1643294 1 0.0000 0.979 1.000 0 0.000
#> SRR1643295 1 0.0000 0.979 1.000 0 0.000
#> SRR1643296 1 0.0000 0.979 1.000 0 0.000
#> SRR1643297 1 0.0000 0.979 1.000 0 0.000
#> SRR1643298 1 0.0000 0.979 1.000 0 0.000
#> SRR1643299 1 0.0000 0.979 1.000 0 0.000
#> SRR1643300 1 0.0000 0.979 1.000 0 0.000
#> SRR1643301 1 0.0000 0.979 1.000 0 0.000
#> SRR1643302 1 0.0000 0.979 1.000 0 0.000
#> SRR1643303 1 0.0000 0.979 1.000 0 0.000
#> SRR1643304 1 0.0000 0.979 1.000 0 0.000
#> SRR1643305 1 0.0000 0.979 1.000 0 0.000
#> SRR1643306 1 0.0000 0.979 1.000 0 0.000
#> SRR1643307 1 0.0000 0.979 1.000 0 0.000
#> SRR1643308 1 0.0000 0.979 1.000 0 0.000
#> SRR1643309 1 0.0000 0.979 1.000 0 0.000
#> SRR1643310 1 0.0000 0.979 1.000 0 0.000
#> SRR1643311 1 0.0000 0.979 1.000 0 0.000
#> SRR1643312 1 0.0000 0.979 1.000 0 0.000
#> SRR1643313 1 0.0000 0.979 1.000 0 0.000
#> SRR1643314 1 0.0237 0.979 0.996 0 0.004
#> SRR1643315 1 0.0237 0.979 0.996 0 0.004
#> SRR1643316 1 0.0237 0.979 0.996 0 0.004
#> SRR1643317 1 0.0237 0.979 0.996 0 0.004
#> SRR1643318 1 0.0237 0.979 0.996 0 0.004
#> SRR1643319 1 0.0237 0.979 0.996 0 0.004
#> SRR1643320 1 0.0237 0.979 0.996 0 0.004
#> SRR1643321 1 0.0237 0.979 0.996 0 0.004
#> SRR1643322 1 0.0237 0.979 0.996 0 0.004
#> SRR1643323 1 0.0237 0.979 0.996 0 0.004
#> SRR1643324 1 0.0237 0.979 0.996 0 0.004
#> SRR1643325 1 0.0237 0.979 0.996 0 0.004
#> SRR1643326 1 0.0237 0.979 0.996 0 0.004
#> SRR1643327 1 0.0237 0.979 0.996 0 0.004
#> SRR1643328 1 0.2448 0.943 0.924 0 0.076
#> SRR1643329 1 0.2448 0.943 0.924 0 0.076
#> SRR1643330 1 0.2448 0.943 0.924 0 0.076
#> SRR1643331 1 0.2448 0.943 0.924 0 0.076
#> SRR1643332 1 0.2448 0.943 0.924 0 0.076
#> SRR1643333 1 0.2448 0.943 0.924 0 0.076
#> SRR1643334 1 0.2356 0.946 0.928 0 0.072
#> SRR1643335 1 0.2448 0.943 0.924 0 0.076
#> SRR1643336 1 0.2448 0.943 0.924 0 0.076
#> SRR1643337 1 0.2448 0.943 0.924 0 0.076
#> SRR1643338 1 0.2448 0.943 0.924 0 0.076
#> SRR1643339 1 0.2448 0.943 0.924 0 0.076
#> SRR1643340 1 0.2448 0.943 0.924 0 0.076
#> SRR1643341 1 0.2448 0.943 0.924 0 0.076
#> SRR1643342 1 0.2448 0.943 0.924 0 0.076
#> SRR1643343 1 0.0424 0.978 0.992 0 0.008
#> SRR1643344 1 0.0424 0.978 0.992 0 0.008
#> SRR1643345 1 0.0424 0.978 0.992 0 0.008
#> SRR1643346 1 0.0424 0.978 0.992 0 0.008
#> SRR1643347 1 0.0424 0.978 0.992 0 0.008
#> SRR1643348 1 0.0424 0.978 0.992 0 0.008
#> SRR1643349 1 0.0424 0.978 0.992 0 0.008
#> SRR1643350 1 0.0424 0.978 0.992 0 0.008
#> SRR1643351 1 0.0424 0.978 0.992 0 0.008
#> SRR1643352 1 0.0424 0.978 0.992 0 0.008
#> SRR1643353 1 0.0424 0.978 0.992 0 0.008
#> SRR1643354 1 0.0424 0.978 0.992 0 0.008
#> SRR1643355 1 0.0424 0.978 0.992 0 0.008
#> SRR1643356 1 0.0424 0.978 0.992 0 0.008
#> SRR1643357 1 0.0424 0.978 0.992 0 0.008
#> SRR1643358 1 0.0000 0.979 1.000 0 0.000
#> SRR1643359 1 0.0000 0.979 1.000 0 0.000
#> SRR1643360 1 0.0000 0.979 1.000 0 0.000
#> SRR1643361 1 0.0000 0.979 1.000 0 0.000
#> SRR1643362 1 0.0000 0.979 1.000 0 0.000
#> SRR1643363 1 0.0000 0.979 1.000 0 0.000
#> SRR1643364 1 0.0000 0.979 1.000 0 0.000
#> SRR1643365 1 0.0000 0.979 1.000 0 0.000
#> SRR1643366 1 0.0000 0.979 1.000 0 0.000
#> SRR1643367 1 0.0000 0.979 1.000 0 0.000
#> SRR1643368 1 0.0000 0.979 1.000 0 0.000
#> SRR1643369 1 0.0000 0.979 1.000 0 0.000
#> SRR1643370 1 0.0000 0.979 1.000 0 0.000
#> SRR1643371 1 0.0000 0.979 1.000 0 0.000
#> SRR1643372 1 0.0000 0.979 1.000 0 0.000
#> SRR1643373 1 0.0000 0.979 1.000 0 0.000
#> SRR1643374 1 0.0000 0.979 1.000 0 0.000
#> SRR1643375 1 0.0000 0.979 1.000 0 0.000
#> SRR1643376 1 0.0000 0.979 1.000 0 0.000
#> SRR1643377 1 0.0000 0.979 1.000 0 0.000
#> SRR1643378 1 0.0000 0.979 1.000 0 0.000
#> SRR1643379 1 0.0000 0.979 1.000 0 0.000
#> SRR1643380 1 0.0000 0.979 1.000 0 0.000
#> SRR1643381 1 0.0000 0.979 1.000 0 0.000
#> SRR1643382 1 0.0000 0.979 1.000 0 0.000
#> SRR1643383 1 0.0000 0.979 1.000 0 0.000
#> SRR1643384 1 0.0000 0.979 1.000 0 0.000
#> SRR1643385 1 0.0000 0.979 1.000 0 0.000
#> SRR1643386 1 0.0000 0.979 1.000 0 0.000
#> SRR1643387 1 0.0000 0.979 1.000 0 0.000
#> SRR1643388 1 0.0000 0.979 1.000 0 0.000
#> SRR1643389 1 0.0000 0.979 1.000 0 0.000
#> SRR1643390 1 0.2448 0.943 0.924 0 0.076
#> SRR1643391 1 0.2448 0.943 0.924 0 0.076
#> SRR1643392 1 0.2448 0.943 0.924 0 0.076
#> SRR1643393 1 0.2448 0.943 0.924 0 0.076
#> SRR1643394 1 0.2448 0.943 0.924 0 0.076
#> SRR1643395 1 0.2448 0.943 0.924 0 0.076
#> SRR1643396 1 0.2448 0.943 0.924 0 0.076
#> SRR1643397 1 0.2448 0.943 0.924 0 0.076
#> SRR1643398 1 0.2448 0.943 0.924 0 0.076
#> SRR1643399 1 0.2448 0.943 0.924 0 0.076
#> SRR1643400 1 0.2448 0.943 0.924 0 0.076
#> SRR1643401 1 0.2448 0.943 0.924 0 0.076
#> SRR1643402 1 0.2448 0.943 0.924 0 0.076
#> SRR1643403 1 0.2448 0.943 0.924 0 0.076
#> SRR1643404 1 0.2448 0.943 0.924 0 0.076
#> SRR1643405 1 0.2448 0.943 0.924 0 0.076
#> SRR1643406 1 0.2448 0.943 0.924 0 0.076
#> SRR1643407 1 0.2448 0.943 0.924 0 0.076
#> SRR1643408 1 0.2448 0.943 0.924 0 0.076
#> SRR1643409 1 0.2448 0.943 0.924 0 0.076
#> SRR1643410 1 0.2448 0.943 0.924 0 0.076
#> SRR1643411 1 0.2448 0.943 0.924 0 0.076
#> SRR1643412 1 0.2448 0.943 0.924 0 0.076
#> SRR1643413 1 0.2448 0.943 0.924 0 0.076
#> SRR1643414 1 0.2448 0.943 0.924 0 0.076
#> SRR1643415 1 0.2448 0.943 0.924 0 0.076
#> SRR1643416 1 0.2448 0.943 0.924 0 0.076
#> SRR1643417 1 0.2448 0.943 0.924 0 0.076
#> SRR1643418 1 0.0000 0.979 1.000 0 0.000
#> SRR1643419 1 0.0000 0.979 1.000 0 0.000
#> SRR1643420 1 0.0000 0.979 1.000 0 0.000
#> SRR1643421 1 0.0000 0.979 1.000 0 0.000
#> SRR1643422 1 0.0000 0.979 1.000 0 0.000
#> SRR1643423 1 0.0000 0.979 1.000 0 0.000
#> SRR1643424 1 0.0000 0.979 1.000 0 0.000
#> SRR1643425 1 0.0000 0.979 1.000 0 0.000
#> SRR1643426 1 0.0000 0.979 1.000 0 0.000
#> SRR1643427 1 0.0000 0.979 1.000 0 0.000
#> SRR1643428 1 0.0000 0.979 1.000 0 0.000
#> SRR1643429 1 0.0000 0.979 1.000 0 0.000
#> SRR1643430 1 0.0000 0.979 1.000 0 0.000
#> SRR1643431 1 0.0000 0.979 1.000 0 0.000
#> SRR1643432 1 0.0000 0.979 1.000 0 0.000
#> SRR1643433 1 0.0000 0.979 1.000 0 0.000
#> SRR1643434 1 0.0000 0.979 1.000 0 0.000
#> SRR1643435 1 0.0000 0.979 1.000 0 0.000
#> SRR1643436 1 0.0000 0.979 1.000 0 0.000
#> SRR1643437 1 0.0000 0.979 1.000 0 0.000
#> SRR1643438 1 0.0000 0.979 1.000 0 0.000
#> SRR1643439 1 0.0000 0.979 1.000 0 0.000
#> SRR1643440 1 0.0000 0.979 1.000 0 0.000
#> SRR1643441 1 0.0000 0.979 1.000 0 0.000
#> SRR1643442 1 0.0000 0.979 1.000 0 0.000
#> SRR1643443 2 0.0000 1.000 0.000 1 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0.000
#> SRR1643505 2 0.0000 1.000 0.000 1 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643168 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643169 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643170 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643171 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643172 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643173 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643174 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643175 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643176 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643177 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643178 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643180 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643181 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643182 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643183 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643184 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643185 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643186 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643187 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643188 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643189 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643190 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643191 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643192 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643193 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643194 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643195 4 0.4985 0.122 0.468 0.000 0.000 0.532
#> SRR1643196 4 0.4985 0.122 0.468 0.000 0.000 0.532
#> SRR1643197 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643198 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643199 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643200 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643201 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643202 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643203 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643204 1 0.0000 0.920 1.000 0.000 0.000 0.000
#> SRR1643205 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643206 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643207 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643208 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643209 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643210 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643211 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643212 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643213 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643214 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643215 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643216 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643217 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643218 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643219 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643220 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643221 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643222 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643223 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643224 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643225 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643226 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643227 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643228 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643229 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643230 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643231 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643232 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643233 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643234 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643235 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643236 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643237 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643238 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643239 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643240 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643241 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643242 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643243 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643245 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643246 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643247 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643248 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643249 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643250 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643251 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643252 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643253 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643254 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643255 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643256 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643257 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643258 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643259 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643260 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643261 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643262 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643263 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643264 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643266 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643267 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643268 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643269 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643270 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643271 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643272 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643273 1 0.3837 0.777 0.776 0.000 0.000 0.224
#> SRR1643274 1 0.3837 0.777 0.776 0.000 0.000 0.224
#> SRR1643275 1 0.3837 0.777 0.776 0.000 0.000 0.224
#> SRR1643276 1 0.3837 0.777 0.776 0.000 0.000 0.224
#> SRR1643277 1 0.3837 0.777 0.776 0.000 0.000 0.224
#> SRR1643278 1 0.3837 0.777 0.776 0.000 0.000 0.224
#> SRR1643279 1 0.3837 0.777 0.776 0.000 0.000 0.224
#> SRR1643280 1 0.3837 0.777 0.776 0.000 0.000 0.224
#> SRR1643281 1 0.3837 0.777 0.776 0.000 0.000 0.224
#> SRR1643282 1 0.3837 0.777 0.776 0.000 0.000 0.224
#> SRR1643283 1 0.3837 0.777 0.776 0.000 0.000 0.224
#> SRR1643284 1 0.3837 0.777 0.776 0.000 0.000 0.224
#> SRR1643285 1 0.3837 0.777 0.776 0.000 0.000 0.224
#> SRR1643286 1 0.3837 0.777 0.776 0.000 0.000 0.224
#> SRR1643287 4 0.0707 0.965 0.020 0.000 0.000 0.980
#> SRR1643288 4 0.0707 0.965 0.020 0.000 0.000 0.980
#> SRR1643289 4 0.0707 0.965 0.020 0.000 0.000 0.980
#> SRR1643290 4 0.0707 0.965 0.020 0.000 0.000 0.980
#> SRR1643291 4 0.0707 0.965 0.020 0.000 0.000 0.980
#> SRR1643292 4 0.0707 0.965 0.020 0.000 0.000 0.980
#> SRR1643293 4 0.0707 0.965 0.020 0.000 0.000 0.980
#> SRR1643294 4 0.0707 0.965 0.020 0.000 0.000 0.980
#> SRR1643295 4 0.0707 0.965 0.020 0.000 0.000 0.980
#> SRR1643296 4 0.0707 0.965 0.020 0.000 0.000 0.980
#> SRR1643297 4 0.0707 0.965 0.020 0.000 0.000 0.980
#> SRR1643298 4 0.0707 0.965 0.020 0.000 0.000 0.980
#> SRR1643299 4 0.0707 0.965 0.020 0.000 0.000 0.980
#> SRR1643300 4 0.0707 0.965 0.020 0.000 0.000 0.980
#> SRR1643301 1 0.4406 0.667 0.700 0.000 0.000 0.300
#> SRR1643302 1 0.4406 0.667 0.700 0.000 0.000 0.300
#> SRR1643303 1 0.4406 0.667 0.700 0.000 0.000 0.300
#> SRR1643304 1 0.4406 0.667 0.700 0.000 0.000 0.300
#> SRR1643305 1 0.4406 0.667 0.700 0.000 0.000 0.300
#> SRR1643306 1 0.4406 0.667 0.700 0.000 0.000 0.300
#> SRR1643307 1 0.4406 0.667 0.700 0.000 0.000 0.300
#> SRR1643308 1 0.4406 0.667 0.700 0.000 0.000 0.300
#> SRR1643309 1 0.4406 0.667 0.700 0.000 0.000 0.300
#> SRR1643310 1 0.4406 0.667 0.700 0.000 0.000 0.300
#> SRR1643311 1 0.4406 0.667 0.700 0.000 0.000 0.300
#> SRR1643312 1 0.4406 0.667 0.700 0.000 0.000 0.300
#> SRR1643313 1 0.4406 0.667 0.700 0.000 0.000 0.300
#> SRR1643314 1 0.1302 0.921 0.956 0.000 0.000 0.044
#> SRR1643315 1 0.1302 0.921 0.956 0.000 0.000 0.044
#> SRR1643316 1 0.1302 0.921 0.956 0.000 0.000 0.044
#> SRR1643317 1 0.1302 0.921 0.956 0.000 0.000 0.044
#> SRR1643318 1 0.1302 0.921 0.956 0.000 0.000 0.044
#> SRR1643319 1 0.1302 0.921 0.956 0.000 0.000 0.044
#> SRR1643320 1 0.1302 0.921 0.956 0.000 0.000 0.044
#> SRR1643321 1 0.1302 0.921 0.956 0.000 0.000 0.044
#> SRR1643322 1 0.1302 0.921 0.956 0.000 0.000 0.044
#> SRR1643323 1 0.1302 0.921 0.956 0.000 0.000 0.044
#> SRR1643324 1 0.1302 0.921 0.956 0.000 0.000 0.044
#> SRR1643325 1 0.1302 0.921 0.956 0.000 0.000 0.044
#> SRR1643326 1 0.1302 0.921 0.956 0.000 0.000 0.044
#> SRR1643327 1 0.1302 0.921 0.956 0.000 0.000 0.044
#> SRR1643328 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643329 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643330 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643331 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643332 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643333 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643334 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643335 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643336 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643337 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643338 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643339 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643340 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643341 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643342 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643343 1 0.2334 0.901 0.908 0.000 0.004 0.088
#> SRR1643344 1 0.2334 0.901 0.908 0.000 0.004 0.088
#> SRR1643345 1 0.2334 0.901 0.908 0.000 0.004 0.088
#> SRR1643346 1 0.2334 0.901 0.908 0.000 0.004 0.088
#> SRR1643347 1 0.2334 0.901 0.908 0.000 0.004 0.088
#> SRR1643348 1 0.2334 0.901 0.908 0.000 0.004 0.088
#> SRR1643349 1 0.2334 0.901 0.908 0.000 0.004 0.088
#> SRR1643350 1 0.2334 0.901 0.908 0.000 0.004 0.088
#> SRR1643351 1 0.2334 0.901 0.908 0.000 0.004 0.088
#> SRR1643352 1 0.2334 0.901 0.908 0.000 0.004 0.088
#> SRR1643353 1 0.2334 0.901 0.908 0.000 0.004 0.088
#> SRR1643354 1 0.2334 0.901 0.908 0.000 0.004 0.088
#> SRR1643355 1 0.2334 0.901 0.908 0.000 0.004 0.088
#> SRR1643356 1 0.2334 0.901 0.908 0.000 0.004 0.088
#> SRR1643357 1 0.2334 0.901 0.908 0.000 0.004 0.088
#> SRR1643358 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643359 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643360 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643361 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643362 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643363 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643364 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643365 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643366 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643367 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643368 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643369 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643370 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643371 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643372 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643373 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643374 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643375 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643376 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643377 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643378 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643379 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643380 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643381 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643382 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643383 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643384 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643385 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643386 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643387 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643388 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643389 4 0.1389 0.972 0.048 0.000 0.000 0.952
#> SRR1643390 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643391 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643392 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643393 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643394 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643395 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643396 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643397 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643398 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643399 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643400 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643401 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643402 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643403 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643404 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643405 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643406 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643407 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643408 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643409 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643410 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643411 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643412 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643413 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643414 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643415 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643416 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643417 1 0.0927 0.926 0.976 0.000 0.008 0.016
#> SRR1643418 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643419 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643420 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643421 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643422 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643423 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643424 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643425 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643426 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643427 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643428 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643429 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643430 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643431 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643432 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643433 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643434 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643435 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643436 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643437 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643438 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643439 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643440 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643441 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643442 4 0.0469 0.961 0.012 0.000 0.000 0.988
#> SRR1643443 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643444 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643445 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643446 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643447 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643448 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643449 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643450 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643451 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643452 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643453 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643454 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643455 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643456 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643457 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643458 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643459 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643460 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643461 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643462 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643463 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643464 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643466 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643467 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643468 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643469 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643470 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643471 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643472 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643473 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643474 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643475 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643477 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643478 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643479 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643480 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643481 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643482 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643483 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643484 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643485 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643486 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643487 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643488 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643489 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643490 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643491 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643492 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643493 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643494 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643495 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643496 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643497 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643498 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643499 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643500 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643501 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643502 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643503 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643504 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643505 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643506 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643507 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643508 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643509 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643510 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643511 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643512 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643513 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643531 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643532 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643533 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643534 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643535 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643536 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643537 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643538 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643539 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643540 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643541 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643542 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643543 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643544 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643514 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643515 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643516 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643517 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643518 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643519 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643520 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643521 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643522 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643523 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643524 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643525 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643526 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643527 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643528 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643529 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643530 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643545 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643546 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643547 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643548 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643549 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643550 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643551 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643552 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643553 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643554 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643555 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643556 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643558 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643559 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643560 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643561 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643562 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643563 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643564 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643565 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643566 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643567 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643568 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643569 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643570 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643571 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643572 2 0.0188 0.996 0.000 0.996 0.000 0.004
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643168 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643169 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643170 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643171 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643172 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643173 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643174 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643175 5 0.4298 0.974 0.352 0.000 0.000 0.008 0.640
#> SRR1643176 5 0.4298 0.974 0.352 0.000 0.000 0.008 0.640
#> SRR1643177 5 0.4298 0.974 0.352 0.000 0.000 0.008 0.640
#> SRR1643178 5 0.4298 0.974 0.352 0.000 0.000 0.008 0.640
#> SRR1643180 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643181 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643182 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643183 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643184 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643185 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643186 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643187 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643188 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643189 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643190 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643191 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643192 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643193 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643194 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643195 5 0.5605 0.670 0.168 0.000 0.000 0.192 0.640
#> SRR1643196 5 0.5605 0.670 0.168 0.000 0.000 0.192 0.640
#> SRR1643197 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643198 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643199 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643200 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643201 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643202 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643203 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643204 5 0.4196 0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643205 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643206 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643207 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643208 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643209 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643210 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643211 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643212 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643213 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643214 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643215 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643216 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643217 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643218 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643219 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643220 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643221 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643222 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643223 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643224 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643225 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643226 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643227 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643228 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643229 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643230 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643231 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643232 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643233 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643234 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643235 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643236 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643237 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643238 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643239 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643240 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643241 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643242 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643243 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643245 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643246 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643247 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643248 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643249 3 0.0000 1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643250 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643251 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643252 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643253 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643254 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643255 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643256 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643257 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643258 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643259 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643260 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643261 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643262 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643263 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643264 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643266 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643267 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643268 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643269 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643270 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643271 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643272 4 0.1626 0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643273 1 0.5325 0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643274 1 0.5325 0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643275 1 0.5325 0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643276 1 0.5325 0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643277 1 0.5325 0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643278 1 0.5325 0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643279 1 0.5325 0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643280 1 0.5325 0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643281 1 0.5325 0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643282 1 0.5325 0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643283 1 0.5325 0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643284 1 0.5325 0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643285 1 0.5325 0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643286 1 0.5325 0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643287 4 0.4390 0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643288 4 0.4390 0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643289 4 0.4390 0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643290 4 0.4390 0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643291 4 0.4390 0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643292 4 0.4390 0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643293 4 0.4390 0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643294 4 0.4390 0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643295 4 0.4390 0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643296 4 0.4390 0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643297 4 0.4390 0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643298 4 0.4390 0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643299 4 0.4390 0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643300 4 0.4390 0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643301 1 0.5123 0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643302 1 0.5123 0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643303 1 0.5123 0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643304 1 0.5123 0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643305 1 0.5123 0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643306 1 0.5123 0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643307 1 0.5123 0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643308 1 0.5123 0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643309 1 0.5123 0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643310 1 0.5123 0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643311 1 0.5123 0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643312 1 0.5123 0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643313 1 0.5123 0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643314 1 0.2438 0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643315 1 0.2438 0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643316 1 0.2438 0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643317 1 0.2438 0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643318 1 0.2438 0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643319 1 0.2438 0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643320 1 0.2438 0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643321 1 0.2438 0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643322 1 0.2438 0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643323 1 0.2438 0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643324 1 0.2438 0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643325 1 0.2438 0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643326 1 0.2438 0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643327 1 0.2438 0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643328 1 0.0865 0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643329 1 0.0865 0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643330 1 0.0865 0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643331 1 0.0865 0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643332 1 0.0865 0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643333 1 0.0865 0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643334 1 0.0865 0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643335 1 0.0865 0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643336 1 0.0865 0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643337 1 0.0865 0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643338 1 0.0865 0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643339 1 0.0865 0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643340 1 0.0865 0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643341 1 0.0865 0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643342 1 0.0865 0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643343 1 0.3471 0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643344 1 0.3471 0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643345 1 0.3471 0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643346 1 0.3471 0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643347 1 0.3471 0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643348 1 0.3471 0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643349 1 0.3471 0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643350 1 0.3471 0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643351 1 0.3471 0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643352 1 0.3471 0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643353 1 0.3471 0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643354 1 0.3471 0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643355 1 0.3471 0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643356 1 0.3471 0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643357 1 0.3471 0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643358 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643359 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643360 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643361 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643362 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643363 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643364 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643365 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643366 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643367 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643368 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643369 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643370 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643371 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643372 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643373 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643374 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643375 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643376 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643377 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643378 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643379 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643380 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643381 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643382 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643383 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643384 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643385 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643386 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643387 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643388 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643389 4 0.1626 0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643390 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643391 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643392 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643393 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643394 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643395 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643396 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643397 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643398 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643399 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643400 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643401 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643402 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643403 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643404 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643405 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643406 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643407 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643408 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643409 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643410 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643411 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643412 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643413 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643414 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643415 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643416 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643417 1 0.0451 0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643418 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643419 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643420 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643421 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643422 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643423 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643424 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643425 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643426 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643427 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643428 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643429 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643430 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643431 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643432 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643433 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643434 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643435 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643436 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643437 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643438 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643439 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643440 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643441 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643442 4 0.3242 0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643443 2 0.0880 0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643444 2 0.0880 0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643445 2 0.0880 0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643446 2 0.0880 0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643447 2 0.0880 0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643448 2 0.0880 0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643449 2 0.0880 0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643450 2 0.0880 0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643451 2 0.0880 0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643452 2 0.0880 0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643453 2 0.0880 0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643454 2 0.0880 0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643455 2 0.0880 0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643456 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643457 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643458 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643459 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643460 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643461 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643462 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643463 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643464 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643466 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643467 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643468 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643469 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643470 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643471 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643472 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643473 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643474 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643475 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643477 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643478 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643479 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643480 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643481 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643482 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643483 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643484 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643485 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643486 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643487 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643488 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643489 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643490 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643491 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643492 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643493 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643494 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643495 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643496 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643497 2 0.0162 0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643498 2 0.0162 0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643499 2 0.0162 0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643500 2 0.0162 0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643501 2 0.0162 0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643502 2 0.0162 0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643503 2 0.0162 0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643504 2 0.0162 0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643505 2 0.0162 0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643506 2 0.0162 0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643507 2 0.0162 0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643508 2 0.0162 0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643509 2 0.0162 0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643510 2 0.0162 0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643511 2 0.0162 0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643512 2 0.0162 0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643513 2 0.0162 0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643531 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643532 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643533 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643534 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643535 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643536 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643537 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643538 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643539 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643540 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643541 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643542 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643543 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643544 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643514 2 0.0703 0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643515 2 0.0703 0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643516 2 0.0703 0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643517 2 0.0703 0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643518 2 0.0703 0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643519 2 0.0703 0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643520 2 0.0703 0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643521 2 0.0703 0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643522 2 0.0703 0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643523 2 0.0703 0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643524 2 0.0703 0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643525 2 0.0703 0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643526 2 0.0703 0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643527 2 0.0703 0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643528 2 0.0703 0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643529 2 0.0703 0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643530 2 0.0703 0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643545 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643546 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643547 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643548 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643549 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643550 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643551 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643552 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643553 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643554 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643555 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643556 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643558 2 0.0000 0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643559 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643560 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643561 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643562 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643563 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643564 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643565 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643566 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643567 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643568 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643569 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643570 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643571 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643572 2 0.0794 0.986 0.000 0.972 0.000 0.000 0.028
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643168 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643169 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643170 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643171 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643172 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643173 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643174 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643175 5 0.3133 0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643176 5 0.3133 0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643177 5 0.3133 0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643178 5 0.3133 0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643180 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643181 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643182 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643183 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643184 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643185 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643186 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643187 5 0.3133 0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643188 5 0.3133 0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643189 5 0.3133 0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643190 5 0.3133 0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643191 5 0.3023 0.988 0.180 0.000 0.000 0.008 0.808 0.004
#> SRR1643192 5 0.3023 0.988 0.180 0.000 0.000 0.008 0.808 0.004
#> SRR1643193 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643194 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643195 5 0.3798 0.845 0.136 0.000 0.000 0.068 0.788 0.008
#> SRR1643196 5 0.3798 0.845 0.136 0.000 0.000 0.068 0.788 0.008
#> SRR1643197 5 0.3133 0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643198 5 0.3133 0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643199 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643200 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643201 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643202 5 0.2882 0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643203 5 0.3133 0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643204 5 0.3133 0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643205 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643206 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643207 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643208 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643209 3 0.0146 0.997 0.000 0.000 0.996 0.000 0.004 0.000
#> SRR1643210 3 0.0146 0.997 0.000 0.000 0.996 0.000 0.004 0.000
#> SRR1643211 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643212 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643213 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643214 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643215 3 0.0260 0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643216 3 0.0260 0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643217 3 0.0260 0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643218 3 0.0260 0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643219 3 0.0260 0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643220 3 0.0260 0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643221 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643222 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643223 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643224 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643225 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643226 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643227 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643228 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643229 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643230 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643231 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643232 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643233 3 0.0260 0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643234 3 0.0260 0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643235 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643236 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643237 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643238 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643239 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643240 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643241 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643242 3 0.0260 0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643243 3 0.0260 0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643245 3 0.0260 0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643246 3 0.0260 0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643247 3 0.0260 0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643248 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643249 3 0.0260 0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643250 4 0.3012 0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643251 4 0.3012 0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643252 4 0.3012 0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643253 4 0.3012 0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643254 4 0.3012 0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643255 4 0.3012 0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643256 4 0.3012 0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643257 4 0.3012 0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643258 4 0.3012 0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643259 4 0.3012 0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643260 4 0.3012 0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643261 4 0.3012 0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643262 4 0.2964 0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643263 4 0.2964 0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643264 4 0.2964 0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643266 4 0.2964 0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643267 4 0.2964 0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643268 4 0.2964 0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643269 4 0.2964 0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643270 4 0.2964 0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643271 4 0.2964 0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643272 4 0.2964 0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643273 1 0.7163 0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643274 1 0.7163 0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643275 1 0.7163 0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643276 1 0.7163 0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643277 1 0.7163 0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643278 1 0.7163 0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643279 1 0.7163 0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643280 1 0.7163 0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643281 1 0.7163 0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643282 1 0.7163 0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643283 1 0.7163 0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643284 1 0.7163 0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643285 1 0.7163 0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643286 1 0.7163 0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643287 6 0.6313 0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643288 6 0.6313 0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643289 6 0.6313 0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643290 6 0.6313 0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643291 6 0.6313 0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643292 6 0.6313 0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643293 6 0.6313 0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643294 6 0.6313 0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643295 6 0.6313 0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643296 6 0.6313 0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643297 6 0.6313 0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643298 6 0.6313 0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643299 6 0.6313 0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643300 6 0.6313 0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643301 1 0.6659 0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643302 1 0.6659 0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643303 1 0.6659 0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643304 1 0.6659 0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643305 1 0.6659 0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643306 1 0.6659 0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643307 1 0.6659 0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643308 1 0.6659 0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643309 1 0.6659 0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643310 1 0.6659 0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643311 1 0.6659 0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643312 1 0.6659 0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643313 1 0.6659 0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643314 1 0.4464 0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643315 1 0.4464 0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643316 1 0.4464 0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643317 1 0.4464 0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643318 1 0.4464 0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643319 1 0.4464 0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643320 1 0.4464 0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643321 1 0.4464 0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643322 1 0.4464 0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643323 1 0.4464 0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643324 1 0.4464 0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643325 1 0.4464 0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643326 1 0.4464 0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643327 1 0.4464 0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643328 1 0.1866 0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643329 1 0.1866 0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643330 1 0.1866 0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643331 1 0.1866 0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643332 1 0.1866 0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643333 1 0.1866 0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643334 1 0.1866 0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643335 1 0.1866 0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643336 1 0.1866 0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643337 1 0.1866 0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643338 1 0.1866 0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643339 1 0.1866 0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643340 1 0.1866 0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643341 1 0.1866 0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643342 1 0.1866 0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643343 1 0.5633 0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643344 1 0.5633 0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643345 1 0.5633 0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643346 1 0.5633 0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643347 1 0.5633 0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643348 1 0.5633 0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643349 1 0.5633 0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643350 1 0.5633 0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643351 1 0.5633 0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643352 1 0.5633 0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643353 1 0.5633 0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643354 1 0.5633 0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643355 1 0.5633 0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643356 1 0.5633 0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643357 1 0.5633 0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643358 4 0.0146 0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643359 4 0.0146 0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643360 4 0.0146 0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643361 4 0.0146 0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643362 4 0.0146 0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643363 4 0.0146 0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643364 4 0.0146 0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643365 4 0.0146 0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643366 4 0.0146 0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643367 4 0.0146 0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643368 4 0.0146 0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643369 4 0.0146 0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643370 4 0.0146 0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643371 4 0.0146 0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643372 4 0.0146 0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643373 4 0.0291 0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643374 4 0.0291 0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643375 4 0.0291 0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643376 4 0.0291 0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643377 4 0.0291 0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643378 4 0.0291 0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643379 4 0.0291 0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643380 4 0.0291 0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643381 4 0.0291 0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643382 4 0.0291 0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643383 4 0.0291 0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643384 4 0.0291 0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643385 4 0.0291 0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643386 4 0.0291 0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643387 4 0.0291 0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643388 4 0.0291 0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643389 4 0.0291 0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643390 1 0.1398 0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643391 1 0.1398 0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643392 1 0.1398 0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643393 1 0.1398 0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643394 1 0.1398 0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643395 1 0.1398 0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643396 1 0.1398 0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643397 1 0.1398 0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643398 1 0.1398 0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643399 1 0.1398 0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643400 1 0.1398 0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643401 1 0.1398 0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643402 1 0.1398 0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643403 1 0.1398 0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643404 1 0.1398 0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643405 1 0.1500 0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643406 1 0.1500 0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643407 1 0.1500 0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643408 1 0.1500 0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643409 1 0.1500 0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643410 1 0.1500 0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643411 1 0.1500 0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643412 1 0.1500 0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643413 1 0.1500 0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643414 1 0.1500 0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643415 1 0.1500 0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643416 1 0.1500 0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643417 1 0.1500 0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643418 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643419 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643420 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643421 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643422 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643423 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643424 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643425 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643426 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643427 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643428 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643429 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643430 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643431 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643432 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643433 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643434 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643435 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643436 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643437 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643438 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643439 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643440 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643441 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643442 6 0.3843 0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643443 2 0.2412 0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643444 2 0.2412 0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643445 2 0.2412 0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643446 2 0.2412 0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643447 2 0.2412 0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643448 2 0.2412 0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643449 2 0.2412 0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643450 2 0.2412 0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643451 2 0.2412 0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643452 2 0.2412 0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643453 2 0.2412 0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643454 2 0.2412 0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643455 2 0.2412 0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643456 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643457 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643458 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643459 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643460 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643461 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643462 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643463 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643464 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643466 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643467 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643468 2 0.0260 0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643469 2 0.0260 0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643470 2 0.0260 0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643471 2 0.0260 0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643472 2 0.0260 0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643473 2 0.0260 0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643474 2 0.0260 0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643475 2 0.0260 0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643477 2 0.0260 0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643478 2 0.0260 0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643479 2 0.0260 0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643480 2 0.0260 0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643481 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643482 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643483 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643484 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643485 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643486 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643487 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643488 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643489 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643490 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643491 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643492 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643493 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643494 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643495 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643496 2 0.0146 0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643497 2 0.0547 0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643498 2 0.0547 0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643499 2 0.0547 0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643500 2 0.0547 0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643501 2 0.0547 0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643502 2 0.0547 0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643503 2 0.0547 0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643504 2 0.0547 0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643505 2 0.0547 0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643506 2 0.0547 0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643507 2 0.0547 0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643508 2 0.0547 0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643509 2 0.0547 0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643510 2 0.0547 0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643511 2 0.0547 0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643512 2 0.0547 0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643513 2 0.0547 0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643531 2 0.2309 0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643532 2 0.2309 0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643533 2 0.2309 0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643534 2 0.2309 0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643535 2 0.2309 0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643536 2 0.2309 0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643537 2 0.2309 0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643538 2 0.2309 0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643539 2 0.2309 0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643540 2 0.2309 0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643541 2 0.2309 0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643542 2 0.2309 0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643543 2 0.2309 0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643544 2 0.2309 0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643514 2 0.2282 0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643515 2 0.2282 0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643516 2 0.2282 0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643517 2 0.2282 0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643518 2 0.2282 0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643519 2 0.2282 0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643520 2 0.2282 0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643521 2 0.2282 0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643522 2 0.2282 0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643523 2 0.2282 0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643524 2 0.2282 0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643525 2 0.2282 0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643526 2 0.2282 0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643527 2 0.2282 0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643528 2 0.2282 0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643529 2 0.2282 0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643530 2 0.2282 0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643545 2 0.0363 0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643546 2 0.0363 0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643547 2 0.0363 0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643548 2 0.0363 0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643549 2 0.0363 0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643550 2 0.0363 0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643551 2 0.0363 0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643552 2 0.0363 0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643553 2 0.0363 0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643554 2 0.0363 0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643555 2 0.0363 0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643556 2 0.0363 0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643558 2 0.0363 0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643559 2 0.2255 0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643560 2 0.2255 0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643561 2 0.2255 0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643562 2 0.2255 0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643563 2 0.2255 0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643564 2 0.2255 0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643565 2 0.2255 0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643566 2 0.2255 0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643567 2 0.2255 0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643568 2 0.2255 0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643569 2 0.2255 0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643570 2 0.2255 0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643571 2 0.2255 0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643572 2 0.2255 0.942 0.000 0.892 0.000 0.000 0.028 0.080
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["SD", "pam"]
# you can also extract it by
# res = res_list["SD:pam"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'SD' method.
#> Subgroups are detected by 'pam' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 6.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.4350 0.566 0.566
#> 3 3 1.000 0.999 0.999 0.2889 0.874 0.777
#> 4 4 0.918 0.948 0.969 0.2841 0.838 0.630
#> 5 5 0.917 0.946 0.974 0.0727 0.950 0.818
#> 6 6 0.907 0.912 0.918 0.0430 0.969 0.862
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 6
#> attr(,"optional")
#> [1] 2 3 4 5
There is also optional best \(k\) = 2 3 4 5 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.00 1.000 1.000 0 0.000
#> SRR1643168 1 0.00 1.000 1.000 0 0.000
#> SRR1643169 1 0.00 1.000 1.000 0 0.000
#> SRR1643170 1 0.00 1.000 1.000 0 0.000
#> SRR1643171 1 0.00 1.000 1.000 0 0.000
#> SRR1643172 1 0.00 1.000 1.000 0 0.000
#> SRR1643173 1 0.00 1.000 1.000 0 0.000
#> SRR1643174 1 0.00 1.000 1.000 0 0.000
#> SRR1643175 1 0.00 1.000 1.000 0 0.000
#> SRR1643176 1 0.00 1.000 1.000 0 0.000
#> SRR1643177 1 0.00 1.000 1.000 0 0.000
#> SRR1643178 1 0.00 1.000 1.000 0 0.000
#> SRR1643180 1 0.00 1.000 1.000 0 0.000
#> SRR1643181 1 0.00 1.000 1.000 0 0.000
#> SRR1643182 1 0.00 1.000 1.000 0 0.000
#> SRR1643183 1 0.00 1.000 1.000 0 0.000
#> SRR1643184 1 0.00 1.000 1.000 0 0.000
#> SRR1643185 1 0.00 1.000 1.000 0 0.000
#> SRR1643186 1 0.00 1.000 1.000 0 0.000
#> SRR1643187 1 0.00 1.000 1.000 0 0.000
#> SRR1643188 1 0.00 1.000 1.000 0 0.000
#> SRR1643189 1 0.00 1.000 1.000 0 0.000
#> SRR1643190 1 0.00 1.000 1.000 0 0.000
#> SRR1643191 1 0.00 1.000 1.000 0 0.000
#> SRR1643192 1 0.00 1.000 1.000 0 0.000
#> SRR1643193 1 0.00 1.000 1.000 0 0.000
#> SRR1643194 1 0.00 1.000 1.000 0 0.000
#> SRR1643195 1 0.00 1.000 1.000 0 0.000
#> SRR1643196 1 0.00 1.000 1.000 0 0.000
#> SRR1643197 1 0.00 1.000 1.000 0 0.000
#> SRR1643198 1 0.00 1.000 1.000 0 0.000
#> SRR1643199 1 0.00 1.000 1.000 0 0.000
#> SRR1643200 1 0.00 1.000 1.000 0 0.000
#> SRR1643201 1 0.00 1.000 1.000 0 0.000
#> SRR1643202 1 0.00 1.000 1.000 0 0.000
#> SRR1643203 1 0.00 1.000 1.000 0 0.000
#> SRR1643204 1 0.00 1.000 1.000 0 0.000
#> SRR1643205 3 0.00 0.994 0.000 0 1.000
#> SRR1643206 3 0.00 0.994 0.000 0 1.000
#> SRR1643207 3 0.00 0.994 0.000 0 1.000
#> SRR1643208 3 0.00 0.994 0.000 0 1.000
#> SRR1643209 3 0.00 0.994 0.000 0 1.000
#> SRR1643210 3 0.00 0.994 0.000 0 1.000
#> SRR1643211 3 0.00 0.994 0.000 0 1.000
#> SRR1643212 3 0.00 0.994 0.000 0 1.000
#> SRR1643213 3 0.00 0.994 0.000 0 1.000
#> SRR1643214 3 0.00 0.994 0.000 0 1.000
#> SRR1643215 3 0.00 0.994 0.000 0 1.000
#> SRR1643216 3 0.00 0.994 0.000 0 1.000
#> SRR1643217 3 0.00 0.994 0.000 0 1.000
#> SRR1643218 3 0.00 0.994 0.000 0 1.000
#> SRR1643219 3 0.00 0.994 0.000 0 1.000
#> SRR1643220 3 0.00 0.994 0.000 0 1.000
#> SRR1643221 3 0.00 0.994 0.000 0 1.000
#> SRR1643222 3 0.00 0.994 0.000 0 1.000
#> SRR1643223 3 0.00 0.994 0.000 0 1.000
#> SRR1643224 3 0.00 0.994 0.000 0 1.000
#> SRR1643225 3 0.00 0.994 0.000 0 1.000
#> SRR1643226 3 0.00 0.994 0.000 0 1.000
#> SRR1643227 3 0.00 0.994 0.000 0 1.000
#> SRR1643228 3 0.00 0.994 0.000 0 1.000
#> SRR1643229 3 0.00 0.994 0.000 0 1.000
#> SRR1643230 3 0.00 0.994 0.000 0 1.000
#> SRR1643231 3 0.00 0.994 0.000 0 1.000
#> SRR1643232 3 0.00 0.994 0.000 0 1.000
#> SRR1643233 3 0.00 0.994 0.000 0 1.000
#> SRR1643234 3 0.00 0.994 0.000 0 1.000
#> SRR1643235 3 0.00 0.994 0.000 0 1.000
#> SRR1643236 3 0.00 0.994 0.000 0 1.000
#> SRR1643237 3 0.00 0.994 0.000 0 1.000
#> SRR1643238 3 0.00 0.994 0.000 0 1.000
#> SRR1643239 3 0.00 0.994 0.000 0 1.000
#> SRR1643240 3 0.00 0.994 0.000 0 1.000
#> SRR1643241 3 0.00 0.994 0.000 0 1.000
#> SRR1643242 3 0.00 0.994 0.000 0 1.000
#> SRR1643243 3 0.00 0.994 0.000 0 1.000
#> SRR1643245 3 0.00 0.994 0.000 0 1.000
#> SRR1643246 3 0.00 0.994 0.000 0 1.000
#> SRR1643247 3 0.00 0.994 0.000 0 1.000
#> SRR1643248 3 0.00 0.994 0.000 0 1.000
#> SRR1643249 3 0.46 0.737 0.204 0 0.796
#> SRR1643250 1 0.00 1.000 1.000 0 0.000
#> SRR1643251 1 0.00 1.000 1.000 0 0.000
#> SRR1643252 1 0.00 1.000 1.000 0 0.000
#> SRR1643253 1 0.00 1.000 1.000 0 0.000
#> SRR1643254 1 0.00 1.000 1.000 0 0.000
#> SRR1643255 1 0.00 1.000 1.000 0 0.000
#> SRR1643256 1 0.00 1.000 1.000 0 0.000
#> SRR1643257 1 0.00 1.000 1.000 0 0.000
#> SRR1643258 1 0.00 1.000 1.000 0 0.000
#> SRR1643259 1 0.00 1.000 1.000 0 0.000
#> SRR1643260 1 0.00 1.000 1.000 0 0.000
#> SRR1643261 1 0.00 1.000 1.000 0 0.000
#> SRR1643262 1 0.00 1.000 1.000 0 0.000
#> SRR1643263 1 0.00 1.000 1.000 0 0.000
#> SRR1643264 1 0.00 1.000 1.000 0 0.000
#> SRR1643266 1 0.00 1.000 1.000 0 0.000
#> SRR1643267 1 0.00 1.000 1.000 0 0.000
#> SRR1643268 1 0.00 1.000 1.000 0 0.000
#> SRR1643269 1 0.00 1.000 1.000 0 0.000
#> SRR1643270 1 0.00 1.000 1.000 0 0.000
#> SRR1643271 1 0.00 1.000 1.000 0 0.000
#> SRR1643272 1 0.00 1.000 1.000 0 0.000
#> SRR1643273 1 0.00 1.000 1.000 0 0.000
#> SRR1643274 1 0.00 1.000 1.000 0 0.000
#> SRR1643275 1 0.00 1.000 1.000 0 0.000
#> SRR1643276 1 0.00 1.000 1.000 0 0.000
#> SRR1643277 1 0.00 1.000 1.000 0 0.000
#> SRR1643278 1 0.00 1.000 1.000 0 0.000
#> SRR1643279 1 0.00 1.000 1.000 0 0.000
#> SRR1643280 1 0.00 1.000 1.000 0 0.000
#> SRR1643281 1 0.00 1.000 1.000 0 0.000
#> SRR1643282 1 0.00 1.000 1.000 0 0.000
#> SRR1643283 1 0.00 1.000 1.000 0 0.000
#> SRR1643284 1 0.00 1.000 1.000 0 0.000
#> SRR1643285 1 0.00 1.000 1.000 0 0.000
#> SRR1643286 1 0.00 1.000 1.000 0 0.000
#> SRR1643287 1 0.00 1.000 1.000 0 0.000
#> SRR1643288 1 0.00 1.000 1.000 0 0.000
#> SRR1643289 1 0.00 1.000 1.000 0 0.000
#> SRR1643290 1 0.00 1.000 1.000 0 0.000
#> SRR1643291 1 0.00 1.000 1.000 0 0.000
#> SRR1643292 1 0.00 1.000 1.000 0 0.000
#> SRR1643293 1 0.00 1.000 1.000 0 0.000
#> SRR1643294 1 0.00 1.000 1.000 0 0.000
#> SRR1643295 1 0.00 1.000 1.000 0 0.000
#> SRR1643296 1 0.00 1.000 1.000 0 0.000
#> SRR1643297 1 0.00 1.000 1.000 0 0.000
#> SRR1643298 1 0.00 1.000 1.000 0 0.000
#> SRR1643299 1 0.00 1.000 1.000 0 0.000
#> SRR1643300 1 0.00 1.000 1.000 0 0.000
#> SRR1643301 1 0.00 1.000 1.000 0 0.000
#> SRR1643302 1 0.00 1.000 1.000 0 0.000
#> SRR1643303 1 0.00 1.000 1.000 0 0.000
#> SRR1643304 1 0.00 1.000 1.000 0 0.000
#> SRR1643305 1 0.00 1.000 1.000 0 0.000
#> SRR1643306 1 0.00 1.000 1.000 0 0.000
#> SRR1643307 1 0.00 1.000 1.000 0 0.000
#> SRR1643308 1 0.00 1.000 1.000 0 0.000
#> SRR1643309 1 0.00 1.000 1.000 0 0.000
#> SRR1643310 1 0.00 1.000 1.000 0 0.000
#> SRR1643311 1 0.00 1.000 1.000 0 0.000
#> SRR1643312 1 0.00 1.000 1.000 0 0.000
#> SRR1643313 1 0.00 1.000 1.000 0 0.000
#> SRR1643314 1 0.00 1.000 1.000 0 0.000
#> SRR1643315 1 0.00 1.000 1.000 0 0.000
#> SRR1643316 1 0.00 1.000 1.000 0 0.000
#> SRR1643317 1 0.00 1.000 1.000 0 0.000
#> SRR1643318 1 0.00 1.000 1.000 0 0.000
#> SRR1643319 1 0.00 1.000 1.000 0 0.000
#> SRR1643320 1 0.00 1.000 1.000 0 0.000
#> SRR1643321 1 0.00 1.000 1.000 0 0.000
#> SRR1643322 1 0.00 1.000 1.000 0 0.000
#> SRR1643323 1 0.00 1.000 1.000 0 0.000
#> SRR1643324 1 0.00 1.000 1.000 0 0.000
#> SRR1643325 1 0.00 1.000 1.000 0 0.000
#> SRR1643326 1 0.00 1.000 1.000 0 0.000
#> SRR1643327 1 0.00 1.000 1.000 0 0.000
#> SRR1643328 1 0.00 1.000 1.000 0 0.000
#> SRR1643329 1 0.00 1.000 1.000 0 0.000
#> SRR1643330 1 0.00 1.000 1.000 0 0.000
#> SRR1643331 1 0.00 1.000 1.000 0 0.000
#> SRR1643332 1 0.00 1.000 1.000 0 0.000
#> SRR1643333 1 0.00 1.000 1.000 0 0.000
#> SRR1643334 1 0.00 1.000 1.000 0 0.000
#> SRR1643335 1 0.00 1.000 1.000 0 0.000
#> SRR1643336 1 0.00 1.000 1.000 0 0.000
#> SRR1643337 1 0.00 1.000 1.000 0 0.000
#> SRR1643338 1 0.00 1.000 1.000 0 0.000
#> SRR1643339 1 0.00 1.000 1.000 0 0.000
#> SRR1643340 1 0.00 1.000 1.000 0 0.000
#> SRR1643341 1 0.00 1.000 1.000 0 0.000
#> SRR1643342 1 0.00 1.000 1.000 0 0.000
#> SRR1643343 1 0.00 1.000 1.000 0 0.000
#> SRR1643344 1 0.00 1.000 1.000 0 0.000
#> SRR1643345 1 0.00 1.000 1.000 0 0.000
#> SRR1643346 1 0.00 1.000 1.000 0 0.000
#> SRR1643347 1 0.00 1.000 1.000 0 0.000
#> SRR1643348 1 0.00 1.000 1.000 0 0.000
#> SRR1643349 1 0.00 1.000 1.000 0 0.000
#> SRR1643350 1 0.00 1.000 1.000 0 0.000
#> SRR1643351 1 0.00 1.000 1.000 0 0.000
#> SRR1643352 1 0.00 1.000 1.000 0 0.000
#> SRR1643353 1 0.00 1.000 1.000 0 0.000
#> SRR1643354 1 0.00 1.000 1.000 0 0.000
#> SRR1643355 1 0.00 1.000 1.000 0 0.000
#> SRR1643356 1 0.00 1.000 1.000 0 0.000
#> SRR1643357 1 0.00 1.000 1.000 0 0.000
#> SRR1643358 1 0.00 1.000 1.000 0 0.000
#> SRR1643359 1 0.00 1.000 1.000 0 0.000
#> SRR1643360 1 0.00 1.000 1.000 0 0.000
#> SRR1643361 1 0.00 1.000 1.000 0 0.000
#> SRR1643362 1 0.00 1.000 1.000 0 0.000
#> SRR1643363 1 0.00 1.000 1.000 0 0.000
#> SRR1643364 1 0.00 1.000 1.000 0 0.000
#> SRR1643365 1 0.00 1.000 1.000 0 0.000
#> SRR1643366 1 0.00 1.000 1.000 0 0.000
#> SRR1643367 1 0.00 1.000 1.000 0 0.000
#> SRR1643368 1 0.00 1.000 1.000 0 0.000
#> SRR1643369 1 0.00 1.000 1.000 0 0.000
#> SRR1643370 1 0.00 1.000 1.000 0 0.000
#> SRR1643371 1 0.00 1.000 1.000 0 0.000
#> SRR1643372 1 0.00 1.000 1.000 0 0.000
#> SRR1643373 1 0.00 1.000 1.000 0 0.000
#> SRR1643374 1 0.00 1.000 1.000 0 0.000
#> SRR1643375 1 0.00 1.000 1.000 0 0.000
#> SRR1643376 1 0.00 1.000 1.000 0 0.000
#> SRR1643377 1 0.00 1.000 1.000 0 0.000
#> SRR1643378 1 0.00 1.000 1.000 0 0.000
#> SRR1643379 1 0.00 1.000 1.000 0 0.000
#> SRR1643380 1 0.00 1.000 1.000 0 0.000
#> SRR1643381 1 0.00 1.000 1.000 0 0.000
#> SRR1643382 1 0.00 1.000 1.000 0 0.000
#> SRR1643383 1 0.00 1.000 1.000 0 0.000
#> SRR1643384 1 0.00 1.000 1.000 0 0.000
#> SRR1643385 1 0.00 1.000 1.000 0 0.000
#> SRR1643386 1 0.00 1.000 1.000 0 0.000
#> SRR1643387 1 0.00 1.000 1.000 0 0.000
#> SRR1643388 1 0.00 1.000 1.000 0 0.000
#> SRR1643389 1 0.00 1.000 1.000 0 0.000
#> SRR1643390 1 0.00 1.000 1.000 0 0.000
#> SRR1643391 1 0.00 1.000 1.000 0 0.000
#> SRR1643392 1 0.00 1.000 1.000 0 0.000
#> SRR1643393 1 0.00 1.000 1.000 0 0.000
#> SRR1643394 1 0.00 1.000 1.000 0 0.000
#> SRR1643395 1 0.00 1.000 1.000 0 0.000
#> SRR1643396 1 0.00 1.000 1.000 0 0.000
#> SRR1643397 1 0.00 1.000 1.000 0 0.000
#> SRR1643398 1 0.00 1.000 1.000 0 0.000
#> SRR1643399 1 0.00 1.000 1.000 0 0.000
#> SRR1643400 1 0.00 1.000 1.000 0 0.000
#> SRR1643401 1 0.00 1.000 1.000 0 0.000
#> SRR1643402 1 0.00 1.000 1.000 0 0.000
#> SRR1643403 1 0.00 1.000 1.000 0 0.000
#> SRR1643404 1 0.00 1.000 1.000 0 0.000
#> SRR1643405 1 0.00 1.000 1.000 0 0.000
#> SRR1643406 1 0.00 1.000 1.000 0 0.000
#> SRR1643407 1 0.00 1.000 1.000 0 0.000
#> SRR1643408 1 0.00 1.000 1.000 0 0.000
#> SRR1643409 1 0.00 1.000 1.000 0 0.000
#> SRR1643410 1 0.00 1.000 1.000 0 0.000
#> SRR1643411 1 0.00 1.000 1.000 0 0.000
#> SRR1643412 1 0.00 1.000 1.000 0 0.000
#> SRR1643413 1 0.00 1.000 1.000 0 0.000
#> SRR1643414 1 0.00 1.000 1.000 0 0.000
#> SRR1643415 1 0.00 1.000 1.000 0 0.000
#> SRR1643416 1 0.00 1.000 1.000 0 0.000
#> SRR1643417 1 0.00 1.000 1.000 0 0.000
#> SRR1643418 1 0.00 1.000 1.000 0 0.000
#> SRR1643419 1 0.00 1.000 1.000 0 0.000
#> SRR1643420 1 0.00 1.000 1.000 0 0.000
#> SRR1643421 1 0.00 1.000 1.000 0 0.000
#> SRR1643422 1 0.00 1.000 1.000 0 0.000
#> SRR1643423 1 0.00 1.000 1.000 0 0.000
#> SRR1643424 1 0.00 1.000 1.000 0 0.000
#> SRR1643425 1 0.00 1.000 1.000 0 0.000
#> SRR1643426 1 0.00 1.000 1.000 0 0.000
#> SRR1643427 1 0.00 1.000 1.000 0 0.000
#> SRR1643428 1 0.00 1.000 1.000 0 0.000
#> SRR1643429 1 0.00 1.000 1.000 0 0.000
#> SRR1643430 1 0.00 1.000 1.000 0 0.000
#> SRR1643431 1 0.00 1.000 1.000 0 0.000
#> SRR1643432 1 0.00 1.000 1.000 0 0.000
#> SRR1643433 1 0.00 1.000 1.000 0 0.000
#> SRR1643434 1 0.00 1.000 1.000 0 0.000
#> SRR1643435 1 0.00 1.000 1.000 0 0.000
#> SRR1643436 1 0.00 1.000 1.000 0 0.000
#> SRR1643437 1 0.00 1.000 1.000 0 0.000
#> SRR1643438 1 0.00 1.000 1.000 0 0.000
#> SRR1643439 1 0.00 1.000 1.000 0 0.000
#> SRR1643440 1 0.00 1.000 1.000 0 0.000
#> SRR1643441 1 0.00 1.000 1.000 0 0.000
#> SRR1643442 1 0.00 1.000 1.000 0 0.000
#> SRR1643443 2 0.00 1.000 0.000 1 0.000
#> SRR1643444 2 0.00 1.000 0.000 1 0.000
#> SRR1643445 2 0.00 1.000 0.000 1 0.000
#> SRR1643446 2 0.00 1.000 0.000 1 0.000
#> SRR1643447 2 0.00 1.000 0.000 1 0.000
#> SRR1643448 2 0.00 1.000 0.000 1 0.000
#> SRR1643449 2 0.00 1.000 0.000 1 0.000
#> SRR1643450 2 0.00 1.000 0.000 1 0.000
#> SRR1643451 2 0.00 1.000 0.000 1 0.000
#> SRR1643452 2 0.00 1.000 0.000 1 0.000
#> SRR1643453 2 0.00 1.000 0.000 1 0.000
#> SRR1643454 2 0.00 1.000 0.000 1 0.000
#> SRR1643455 2 0.00 1.000 0.000 1 0.000
#> SRR1643456 2 0.00 1.000 0.000 1 0.000
#> SRR1643457 2 0.00 1.000 0.000 1 0.000
#> SRR1643458 2 0.00 1.000 0.000 1 0.000
#> SRR1643459 2 0.00 1.000 0.000 1 0.000
#> SRR1643460 2 0.00 1.000 0.000 1 0.000
#> SRR1643461 2 0.00 1.000 0.000 1 0.000
#> SRR1643462 2 0.00 1.000 0.000 1 0.000
#> SRR1643463 2 0.00 1.000 0.000 1 0.000
#> SRR1643464 2 0.00 1.000 0.000 1 0.000
#> SRR1643466 2 0.00 1.000 0.000 1 0.000
#> SRR1643467 2 0.00 1.000 0.000 1 0.000
#> SRR1643468 2 0.00 1.000 0.000 1 0.000
#> SRR1643469 2 0.00 1.000 0.000 1 0.000
#> SRR1643470 2 0.00 1.000 0.000 1 0.000
#> SRR1643471 2 0.00 1.000 0.000 1 0.000
#> SRR1643472 2 0.00 1.000 0.000 1 0.000
#> SRR1643473 2 0.00 1.000 0.000 1 0.000
#> SRR1643474 2 0.00 1.000 0.000 1 0.000
#> SRR1643475 2 0.00 1.000 0.000 1 0.000
#> SRR1643477 2 0.00 1.000 0.000 1 0.000
#> SRR1643478 2 0.00 1.000 0.000 1 0.000
#> SRR1643479 2 0.00 1.000 0.000 1 0.000
#> SRR1643480 2 0.00 1.000 0.000 1 0.000
#> SRR1643481 2 0.00 1.000 0.000 1 0.000
#> SRR1643482 2 0.00 1.000 0.000 1 0.000
#> SRR1643483 2 0.00 1.000 0.000 1 0.000
#> SRR1643484 2 0.00 1.000 0.000 1 0.000
#> SRR1643485 2 0.00 1.000 0.000 1 0.000
#> SRR1643486 2 0.00 1.000 0.000 1 0.000
#> SRR1643487 2 0.00 1.000 0.000 1 0.000
#> SRR1643488 2 0.00 1.000 0.000 1 0.000
#> SRR1643489 2 0.00 1.000 0.000 1 0.000
#> SRR1643490 2 0.00 1.000 0.000 1 0.000
#> SRR1643491 2 0.00 1.000 0.000 1 0.000
#> SRR1643492 2 0.00 1.000 0.000 1 0.000
#> SRR1643493 2 0.00 1.000 0.000 1 0.000
#> SRR1643494 2 0.00 1.000 0.000 1 0.000
#> SRR1643495 2 0.00 1.000 0.000 1 0.000
#> SRR1643496 2 0.00 1.000 0.000 1 0.000
#> SRR1643497 2 0.00 1.000 0.000 1 0.000
#> SRR1643498 2 0.00 1.000 0.000 1 0.000
#> SRR1643499 2 0.00 1.000 0.000 1 0.000
#> SRR1643500 2 0.00 1.000 0.000 1 0.000
#> SRR1643501 2 0.00 1.000 0.000 1 0.000
#> SRR1643502 2 0.00 1.000 0.000 1 0.000
#> SRR1643503 2 0.00 1.000 0.000 1 0.000
#> SRR1643504 2 0.00 1.000 0.000 1 0.000
#> SRR1643505 2 0.00 1.000 0.000 1 0.000
#> SRR1643506 2 0.00 1.000 0.000 1 0.000
#> SRR1643507 2 0.00 1.000 0.000 1 0.000
#> SRR1643508 2 0.00 1.000 0.000 1 0.000
#> SRR1643509 2 0.00 1.000 0.000 1 0.000
#> SRR1643510 2 0.00 1.000 0.000 1 0.000
#> SRR1643511 2 0.00 1.000 0.000 1 0.000
#> SRR1643512 2 0.00 1.000 0.000 1 0.000
#> SRR1643513 2 0.00 1.000 0.000 1 0.000
#> SRR1643531 2 0.00 1.000 0.000 1 0.000
#> SRR1643532 2 0.00 1.000 0.000 1 0.000
#> SRR1643533 2 0.00 1.000 0.000 1 0.000
#> SRR1643534 2 0.00 1.000 0.000 1 0.000
#> SRR1643535 2 0.00 1.000 0.000 1 0.000
#> SRR1643536 2 0.00 1.000 0.000 1 0.000
#> SRR1643537 2 0.00 1.000 0.000 1 0.000
#> SRR1643538 2 0.00 1.000 0.000 1 0.000
#> SRR1643539 2 0.00 1.000 0.000 1 0.000
#> SRR1643540 2 0.00 1.000 0.000 1 0.000
#> SRR1643541 2 0.00 1.000 0.000 1 0.000
#> SRR1643542 2 0.00 1.000 0.000 1 0.000
#> SRR1643543 2 0.00 1.000 0.000 1 0.000
#> SRR1643544 2 0.00 1.000 0.000 1 0.000
#> SRR1643514 2 0.00 1.000 0.000 1 0.000
#> SRR1643515 2 0.00 1.000 0.000 1 0.000
#> SRR1643516 2 0.00 1.000 0.000 1 0.000
#> SRR1643517 2 0.00 1.000 0.000 1 0.000
#> SRR1643518 2 0.00 1.000 0.000 1 0.000
#> SRR1643519 2 0.00 1.000 0.000 1 0.000
#> SRR1643520 2 0.00 1.000 0.000 1 0.000
#> SRR1643521 2 0.00 1.000 0.000 1 0.000
#> SRR1643522 2 0.00 1.000 0.000 1 0.000
#> SRR1643523 2 0.00 1.000 0.000 1 0.000
#> SRR1643524 2 0.00 1.000 0.000 1 0.000
#> SRR1643525 2 0.00 1.000 0.000 1 0.000
#> SRR1643526 2 0.00 1.000 0.000 1 0.000
#> SRR1643527 2 0.00 1.000 0.000 1 0.000
#> SRR1643528 2 0.00 1.000 0.000 1 0.000
#> SRR1643529 2 0.00 1.000 0.000 1 0.000
#> SRR1643530 2 0.00 1.000 0.000 1 0.000
#> SRR1643545 2 0.00 1.000 0.000 1 0.000
#> SRR1643546 2 0.00 1.000 0.000 1 0.000
#> SRR1643547 2 0.00 1.000 0.000 1 0.000
#> SRR1643548 2 0.00 1.000 0.000 1 0.000
#> SRR1643549 2 0.00 1.000 0.000 1 0.000
#> SRR1643550 2 0.00 1.000 0.000 1 0.000
#> SRR1643551 2 0.00 1.000 0.000 1 0.000
#> SRR1643552 2 0.00 1.000 0.000 1 0.000
#> SRR1643553 2 0.00 1.000 0.000 1 0.000
#> SRR1643554 2 0.00 1.000 0.000 1 0.000
#> SRR1643555 2 0.00 1.000 0.000 1 0.000
#> SRR1643556 2 0.00 1.000 0.000 1 0.000
#> SRR1643558 2 0.00 1.000 0.000 1 0.000
#> SRR1643559 2 0.00 1.000 0.000 1 0.000
#> SRR1643560 2 0.00 1.000 0.000 1 0.000
#> SRR1643561 2 0.00 1.000 0.000 1 0.000
#> SRR1643562 2 0.00 1.000 0.000 1 0.000
#> SRR1643563 2 0.00 1.000 0.000 1 0.000
#> SRR1643564 2 0.00 1.000 0.000 1 0.000
#> SRR1643565 2 0.00 1.000 0.000 1 0.000
#> SRR1643566 2 0.00 1.000 0.000 1 0.000
#> SRR1643567 2 0.00 1.000 0.000 1 0.000
#> SRR1643568 2 0.00 1.000 0.000 1 0.000
#> SRR1643569 2 0.00 1.000 0.000 1 0.000
#> SRR1643570 2 0.00 1.000 0.000 1 0.000
#> SRR1643571 2 0.00 1.000 0.000 1 0.000
#> SRR1643572 2 0.00 1.000 0.000 1 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643168 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643169 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643170 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643171 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643172 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643173 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643174 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643175 4 0.0707 0.942 0.020 0.00 0.000 0.980
#> SRR1643176 4 0.0817 0.940 0.024 0.00 0.000 0.976
#> SRR1643177 4 0.0469 0.947 0.012 0.00 0.000 0.988
#> SRR1643178 4 0.0817 0.940 0.024 0.00 0.000 0.976
#> SRR1643180 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643181 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643182 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643183 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643184 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643185 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643186 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643187 1 0.0817 0.954 0.976 0.00 0.000 0.024
#> SRR1643188 1 0.0817 0.954 0.976 0.00 0.000 0.024
#> SRR1643189 1 0.0817 0.954 0.976 0.00 0.000 0.024
#> SRR1643190 1 0.0817 0.954 0.976 0.00 0.000 0.024
#> SRR1643191 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643192 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643193 1 0.0921 0.951 0.972 0.00 0.000 0.028
#> SRR1643194 1 0.1118 0.944 0.964 0.00 0.000 0.036
#> SRR1643195 4 0.1792 0.908 0.068 0.00 0.000 0.932
#> SRR1643196 4 0.1792 0.908 0.068 0.00 0.000 0.932
#> SRR1643197 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643198 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643199 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643200 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643201 1 0.4040 0.722 0.752 0.00 0.000 0.248
#> SRR1643202 1 0.4072 0.715 0.748 0.00 0.000 0.252
#> SRR1643203 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643204 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643205 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643206 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643207 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643208 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643209 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643210 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643211 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643212 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643213 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643214 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643215 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643216 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643217 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643218 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643219 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643220 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643221 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643222 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643223 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643224 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643225 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643226 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643227 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643228 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643229 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643230 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643231 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643232 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643233 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643234 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643235 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643236 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643237 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643238 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643239 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643240 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643241 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643242 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643243 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643245 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643246 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643247 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643248 3 0.0000 0.993 0.000 0.00 1.000 0.000
#> SRR1643249 3 0.4382 0.580 0.296 0.00 0.704 0.000
#> SRR1643250 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643251 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643252 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643253 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643254 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643255 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643256 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643257 4 0.0188 0.951 0.004 0.00 0.000 0.996
#> SRR1643258 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643259 4 0.0469 0.946 0.012 0.00 0.000 0.988
#> SRR1643260 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643261 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643262 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643263 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643264 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643266 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643267 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643268 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643269 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643270 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643271 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643272 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643273 1 0.3907 0.751 0.768 0.00 0.000 0.232
#> SRR1643274 1 0.3907 0.751 0.768 0.00 0.000 0.232
#> SRR1643275 1 0.3907 0.751 0.768 0.00 0.000 0.232
#> SRR1643276 1 0.3907 0.751 0.768 0.00 0.000 0.232
#> SRR1643277 1 0.3907 0.751 0.768 0.00 0.000 0.232
#> SRR1643278 1 0.3907 0.751 0.768 0.00 0.000 0.232
#> SRR1643279 1 0.3907 0.751 0.768 0.00 0.000 0.232
#> SRR1643280 1 0.3907 0.751 0.768 0.00 0.000 0.232
#> SRR1643281 1 0.3907 0.751 0.768 0.00 0.000 0.232
#> SRR1643282 1 0.3907 0.751 0.768 0.00 0.000 0.232
#> SRR1643283 1 0.3907 0.751 0.768 0.00 0.000 0.232
#> SRR1643284 1 0.3907 0.751 0.768 0.00 0.000 0.232
#> SRR1643285 1 0.3907 0.751 0.768 0.00 0.000 0.232
#> SRR1643286 1 0.3907 0.751 0.768 0.00 0.000 0.232
#> SRR1643287 4 0.0188 0.951 0.004 0.00 0.000 0.996
#> SRR1643288 4 0.0188 0.951 0.004 0.00 0.000 0.996
#> SRR1643289 4 0.0188 0.951 0.004 0.00 0.000 0.996
#> SRR1643290 4 0.0188 0.951 0.004 0.00 0.000 0.996
#> SRR1643291 4 0.0188 0.951 0.004 0.00 0.000 0.996
#> SRR1643292 4 0.0188 0.951 0.004 0.00 0.000 0.996
#> SRR1643293 4 0.0188 0.951 0.004 0.00 0.000 0.996
#> SRR1643294 4 0.0188 0.951 0.004 0.00 0.000 0.996
#> SRR1643295 4 0.0188 0.951 0.004 0.00 0.000 0.996
#> SRR1643296 4 0.0188 0.951 0.004 0.00 0.000 0.996
#> SRR1643297 4 0.0188 0.951 0.004 0.00 0.000 0.996
#> SRR1643298 4 0.0188 0.951 0.004 0.00 0.000 0.996
#> SRR1643299 4 0.0188 0.951 0.004 0.00 0.000 0.996
#> SRR1643300 4 0.0188 0.951 0.004 0.00 0.000 0.996
#> SRR1643301 4 0.4164 0.662 0.264 0.00 0.000 0.736
#> SRR1643302 4 0.4543 0.540 0.324 0.00 0.000 0.676
#> SRR1643303 4 0.3975 0.705 0.240 0.00 0.000 0.760
#> SRR1643304 4 0.4331 0.617 0.288 0.00 0.000 0.712
#> SRR1643305 4 0.4222 0.648 0.272 0.00 0.000 0.728
#> SRR1643306 4 0.2921 0.843 0.140 0.00 0.000 0.860
#> SRR1643307 4 0.4543 0.540 0.324 0.00 0.000 0.676
#> SRR1643308 4 0.4103 0.676 0.256 0.00 0.000 0.744
#> SRR1643309 4 0.3873 0.722 0.228 0.00 0.000 0.772
#> SRR1643310 4 0.2647 0.865 0.120 0.00 0.000 0.880
#> SRR1643311 4 0.2973 0.838 0.144 0.00 0.000 0.856
#> SRR1643312 4 0.4406 0.592 0.300 0.00 0.000 0.700
#> SRR1643313 4 0.4454 0.576 0.308 0.00 0.000 0.692
#> SRR1643314 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643315 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643316 1 0.0817 0.954 0.976 0.00 0.000 0.024
#> SRR1643317 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643318 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643319 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643320 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643321 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643322 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643323 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643324 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643325 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643326 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643327 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643328 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643329 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643330 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643331 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643332 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643333 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643334 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643335 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643336 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643337 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643338 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643339 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643340 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643341 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643342 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643343 4 0.2589 0.876 0.116 0.00 0.000 0.884
#> SRR1643344 4 0.2647 0.871 0.120 0.00 0.000 0.880
#> SRR1643345 4 0.2814 0.861 0.132 0.00 0.000 0.868
#> SRR1643346 4 0.3123 0.834 0.156 0.00 0.000 0.844
#> SRR1643347 4 0.2921 0.853 0.140 0.00 0.000 0.860
#> SRR1643348 4 0.2921 0.852 0.140 0.00 0.000 0.860
#> SRR1643349 4 0.2281 0.891 0.096 0.00 0.000 0.904
#> SRR1643350 4 0.3024 0.844 0.148 0.00 0.000 0.852
#> SRR1643351 4 0.3074 0.841 0.152 0.00 0.000 0.848
#> SRR1643352 4 0.2760 0.865 0.128 0.00 0.000 0.872
#> SRR1643353 4 0.2647 0.872 0.120 0.00 0.000 0.880
#> SRR1643354 4 0.2469 0.882 0.108 0.00 0.000 0.892
#> SRR1643355 4 0.2530 0.879 0.112 0.00 0.000 0.888
#> SRR1643356 4 0.2704 0.868 0.124 0.00 0.000 0.876
#> SRR1643357 4 0.2589 0.875 0.116 0.00 0.000 0.884
#> SRR1643358 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643359 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643360 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643361 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643362 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643363 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643364 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643365 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643366 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643367 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643368 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643369 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643370 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643371 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643372 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643373 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643374 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643375 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643376 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643377 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643378 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643379 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643380 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643381 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643382 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643383 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643384 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643385 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643386 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643387 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643388 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643389 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643390 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643391 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643392 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643393 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643394 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643395 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643396 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643397 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643398 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643399 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643400 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643401 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643402 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643403 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643404 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643405 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643406 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643407 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643408 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643409 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643410 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643411 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643412 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643413 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643414 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643415 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643416 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643417 1 0.0707 0.957 0.980 0.00 0.000 0.020
#> SRR1643418 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643419 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643420 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643421 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643422 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643423 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643424 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643425 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643426 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643427 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643428 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643429 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643430 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643431 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643432 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643433 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643434 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643435 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643436 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643437 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643438 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643439 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643440 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643441 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643442 4 0.0000 0.952 0.000 0.00 0.000 1.000
#> SRR1643443 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643444 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643445 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643446 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643447 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643448 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643449 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643450 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643451 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643452 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643453 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643454 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643455 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643456 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643457 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643458 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643459 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643460 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643461 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643462 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643463 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643464 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643466 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643467 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643468 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643469 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643470 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643471 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643472 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643473 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643474 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643475 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643477 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643478 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643479 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643480 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643481 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643482 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643483 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643484 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643485 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643486 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643487 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643488 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643489 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643490 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643491 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643492 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643493 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643494 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643495 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643496 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643497 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643498 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643499 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643500 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643501 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643502 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643503 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643504 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643505 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643506 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643507 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643508 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643509 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643510 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643511 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643512 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643513 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643531 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643532 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643533 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643534 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643535 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643536 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643537 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643538 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643539 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643540 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643541 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643542 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643543 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643544 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643514 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643515 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643516 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643517 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643518 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643519 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643520 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643521 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643522 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643523 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643524 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643525 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643526 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643527 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643528 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643529 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643530 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643545 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643546 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643547 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643548 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643549 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643550 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643551 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643552 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643553 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643554 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643555 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643556 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643558 2 0.0000 0.992 0.000 1.00 0.000 0.000
#> SRR1643559 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643560 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643561 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643562 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643563 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643564 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643565 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643566 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643567 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643568 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643569 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643570 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643571 2 0.0707 0.990 0.020 0.98 0.000 0.000
#> SRR1643572 2 0.0707 0.990 0.020 0.98 0.000 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643168 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643169 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643170 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643171 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643172 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643173 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643174 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643175 4 0.0609 0.9410 0.020 0.000 0.000 0.980 0.000
#> SRR1643176 4 0.0703 0.9386 0.024 0.000 0.000 0.976 0.000
#> SRR1643177 4 0.0404 0.9454 0.012 0.000 0.000 0.988 0.000
#> SRR1643178 4 0.0703 0.9386 0.024 0.000 0.000 0.976 0.000
#> SRR1643180 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643181 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643182 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643183 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643184 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643185 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643186 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643187 1 0.0324 0.9519 0.992 0.000 0.000 0.004 0.004
#> SRR1643188 1 0.0324 0.9519 0.992 0.000 0.000 0.004 0.004
#> SRR1643189 1 0.0324 0.9519 0.992 0.000 0.000 0.004 0.004
#> SRR1643190 1 0.0324 0.9519 0.992 0.000 0.000 0.004 0.004
#> SRR1643191 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643192 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643193 1 0.0451 0.9492 0.988 0.000 0.000 0.008 0.004
#> SRR1643194 1 0.0671 0.9422 0.980 0.000 0.000 0.016 0.004
#> SRR1643195 4 0.1704 0.9055 0.068 0.000 0.000 0.928 0.004
#> SRR1643196 4 0.1704 0.9055 0.068 0.000 0.000 0.928 0.004
#> SRR1643197 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643198 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643199 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643200 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643201 1 0.3521 0.7228 0.764 0.000 0.000 0.232 0.004
#> SRR1643202 1 0.3521 0.7221 0.764 0.000 0.000 0.232 0.004
#> SRR1643203 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643204 1 0.0162 0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643205 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643206 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643207 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643208 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643209 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643210 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643211 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643212 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643213 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643214 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643215 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643216 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643217 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643218 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643219 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643220 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643221 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643222 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643223 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643224 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643225 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643226 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643227 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643228 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643229 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643230 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643231 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643232 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643233 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643234 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643235 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643236 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643237 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643238 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643239 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643240 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643241 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643242 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643243 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643245 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643246 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643247 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643248 3 0.0000 0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643249 3 0.3906 0.5819 0.292 0.000 0.704 0.000 0.004
#> SRR1643250 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643251 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643252 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643253 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643254 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643255 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643256 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643257 4 0.0162 0.9494 0.004 0.000 0.000 0.996 0.000
#> SRR1643258 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643259 4 0.0404 0.9450 0.012 0.000 0.000 0.988 0.000
#> SRR1643260 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643261 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643262 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643263 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643264 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643266 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643267 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643268 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643269 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643270 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643271 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643272 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643273 1 0.3242 0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643274 1 0.3242 0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643275 1 0.3242 0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643276 1 0.3242 0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643277 1 0.3242 0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643278 1 0.3242 0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643279 1 0.3242 0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643280 1 0.3242 0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643281 1 0.3242 0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643282 1 0.3242 0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643283 1 0.3242 0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643284 1 0.3242 0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643285 1 0.3242 0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643286 1 0.3242 0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643287 4 0.0162 0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643288 4 0.0162 0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643289 4 0.0162 0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643290 4 0.0162 0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643291 4 0.0162 0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643292 4 0.0162 0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643293 4 0.0162 0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643294 4 0.0162 0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643295 4 0.0162 0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643296 4 0.0162 0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643297 4 0.0162 0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643298 4 0.0162 0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643299 4 0.0162 0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643300 4 0.0162 0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643301 4 0.3612 0.6639 0.268 0.000 0.000 0.732 0.000
#> SRR1643302 4 0.3932 0.5447 0.328 0.000 0.000 0.672 0.000
#> SRR1643303 4 0.3452 0.7054 0.244 0.000 0.000 0.756 0.000
#> SRR1643304 4 0.3774 0.6119 0.296 0.000 0.000 0.704 0.000
#> SRR1643305 4 0.3661 0.6500 0.276 0.000 0.000 0.724 0.000
#> SRR1643306 4 0.2561 0.8410 0.144 0.000 0.000 0.856 0.000
#> SRR1643307 4 0.3966 0.5264 0.336 0.000 0.000 0.664 0.000
#> SRR1643308 4 0.3561 0.6777 0.260 0.000 0.000 0.740 0.000
#> SRR1643309 4 0.3366 0.7229 0.232 0.000 0.000 0.768 0.000
#> SRR1643310 4 0.2280 0.8647 0.120 0.000 0.000 0.880 0.000
#> SRR1643311 4 0.2605 0.8361 0.148 0.000 0.000 0.852 0.000
#> SRR1643312 4 0.3816 0.5960 0.304 0.000 0.000 0.696 0.000
#> SRR1643313 4 0.3876 0.5711 0.316 0.000 0.000 0.684 0.000
#> SRR1643314 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643315 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643316 1 0.0162 0.9530 0.996 0.000 0.000 0.004 0.000
#> SRR1643317 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643318 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643319 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643320 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643321 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643322 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643323 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643324 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643325 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643326 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643327 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643328 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643329 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643330 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643331 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643332 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643333 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643334 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643335 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643336 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643337 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643338 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643339 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643340 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643341 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643342 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643343 4 0.2280 0.8710 0.120 0.000 0.000 0.880 0.000
#> SRR1643344 4 0.2329 0.8665 0.124 0.000 0.000 0.876 0.000
#> SRR1643345 4 0.2471 0.8569 0.136 0.000 0.000 0.864 0.000
#> SRR1643346 4 0.2732 0.8315 0.160 0.000 0.000 0.840 0.000
#> SRR1643347 4 0.2561 0.8500 0.144 0.000 0.000 0.856 0.000
#> SRR1643348 4 0.2561 0.8483 0.144 0.000 0.000 0.856 0.000
#> SRR1643349 4 0.2020 0.8865 0.100 0.000 0.000 0.900 0.000
#> SRR1643350 4 0.2648 0.8406 0.152 0.000 0.000 0.848 0.000
#> SRR1643351 4 0.2690 0.8381 0.156 0.000 0.000 0.844 0.000
#> SRR1643352 4 0.2424 0.8605 0.132 0.000 0.000 0.868 0.000
#> SRR1643353 4 0.2329 0.8674 0.124 0.000 0.000 0.876 0.000
#> SRR1643354 4 0.2179 0.8773 0.112 0.000 0.000 0.888 0.000
#> SRR1643355 4 0.2179 0.8776 0.112 0.000 0.000 0.888 0.000
#> SRR1643356 4 0.2377 0.8634 0.128 0.000 0.000 0.872 0.000
#> SRR1643357 4 0.2280 0.8708 0.120 0.000 0.000 0.880 0.000
#> SRR1643358 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643359 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643360 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643361 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643362 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643363 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643364 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643365 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643366 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643367 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643368 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643369 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643370 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643371 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643372 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643373 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643374 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643375 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643376 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643377 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643378 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643379 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643380 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643381 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643382 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643383 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643384 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643385 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643386 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643387 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643388 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643389 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643390 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643391 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643392 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643393 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643394 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643395 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643396 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643397 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643398 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643399 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643400 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643401 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643402 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643403 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643404 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643405 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643406 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643407 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643408 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643409 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643410 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643411 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643412 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643413 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643414 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643415 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643416 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643417 1 0.0000 0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643418 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643419 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643420 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643421 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643422 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643423 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643424 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643425 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643426 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643427 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643428 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643429 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643430 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643431 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643432 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643433 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643434 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643435 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643436 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643437 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643438 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643439 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643440 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643441 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643442 4 0.0000 0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643443 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643444 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643445 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643446 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643447 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643448 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643449 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643450 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643451 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643452 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643453 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643454 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643455 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643456 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643457 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643458 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643459 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643460 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643461 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643462 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643463 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643464 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643466 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643467 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643468 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643469 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643470 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643471 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643472 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643473 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643474 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643475 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643477 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643478 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643479 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643480 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643481 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643482 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643483 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643484 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643485 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643486 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643487 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643488 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643489 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643490 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643491 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643492 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643493 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643494 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643495 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643496 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643497 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643498 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643499 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643500 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643501 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643502 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643503 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643504 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643505 5 0.4305 0.0552 0.000 0.488 0.000 0.000 0.512
#> SRR1643506 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643507 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643508 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643509 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643510 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643511 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643512 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643513 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643531 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643532 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643533 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643534 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643535 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643536 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643537 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643538 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643539 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643540 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643541 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643542 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643543 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643544 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643514 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643515 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643516 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643517 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643518 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643519 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643520 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643521 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643522 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643523 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643524 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643525 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643526 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643527 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643528 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643529 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643530 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643545 2 0.0162 0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643546 2 0.0162 0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643547 2 0.0162 0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643548 2 0.0162 0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643549 2 0.0162 0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643550 2 0.0510 0.9841 0.000 0.984 0.000 0.000 0.016
#> SRR1643551 2 0.0290 0.9924 0.000 0.992 0.000 0.000 0.008
#> SRR1643552 2 0.0162 0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643553 2 0.0162 0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643554 2 0.0162 0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643555 2 0.0162 0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643556 2 0.0162 0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643558 2 0.0162 0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643559 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643560 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643561 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643562 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643563 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643564 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643565 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643566 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643567 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643568 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643569 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643570 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643571 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643572 5 0.0162 0.9907 0.000 0.004 0.000 0.000 0.996
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643168 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643169 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643170 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643171 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643172 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643173 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643174 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643175 4 0.1584 0.8176 0.008 0.000 0.000 0.928 0.000 0.064
#> SRR1643176 4 0.1625 0.8192 0.012 0.000 0.000 0.928 0.000 0.060
#> SRR1643177 4 0.1411 0.8212 0.004 0.000 0.000 0.936 0.000 0.060
#> SRR1643178 4 0.1333 0.8283 0.008 0.000 0.000 0.944 0.000 0.048
#> SRR1643180 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643181 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643182 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643183 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643184 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643185 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643186 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643187 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643188 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643189 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643190 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643191 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643192 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643193 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643194 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643195 6 0.2784 0.5211 0.028 0.000 0.000 0.124 0.000 0.848
#> SRR1643196 6 0.2909 0.5210 0.028 0.000 0.000 0.136 0.000 0.836
#> SRR1643197 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643198 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643199 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643200 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643201 6 0.3684 0.9049 0.332 0.000 0.000 0.004 0.000 0.664
#> SRR1643202 6 0.3756 0.9356 0.352 0.000 0.000 0.004 0.000 0.644
#> SRR1643203 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643204 6 0.3672 0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643205 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643206 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643207 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643208 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643209 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643210 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643211 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643212 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643213 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643214 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643215 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643216 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643217 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643218 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643219 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643220 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643221 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643222 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643223 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643224 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643225 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643226 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643227 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643228 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643229 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643230 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643231 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643232 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643233 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643234 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643235 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643236 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643237 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643238 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643239 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643240 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643241 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643242 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643243 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643245 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643246 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643247 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643248 3 0.0000 0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643249 3 0.3817 0.3456 0.000 0.000 0.568 0.000 0.000 0.432
#> SRR1643250 4 0.0146 0.8502 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643251 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643252 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643253 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643254 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643255 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643256 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643257 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643258 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643259 4 0.0146 0.8502 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643260 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643261 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643262 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643263 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643264 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643266 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643267 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643268 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643269 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643270 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643271 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643272 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643273 1 0.1610 0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643274 1 0.1610 0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643275 1 0.1610 0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643276 1 0.1610 0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643277 1 0.1610 0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643278 1 0.1610 0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643279 1 0.1610 0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643280 1 0.1610 0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643281 1 0.1610 0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643282 1 0.1610 0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643283 1 0.1610 0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643284 1 0.1610 0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643285 1 0.1610 0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643286 1 0.1610 0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643287 4 0.3221 0.7907 0.000 0.000 0.000 0.736 0.000 0.264
#> SRR1643288 4 0.3266 0.7872 0.000 0.000 0.000 0.728 0.000 0.272
#> SRR1643289 4 0.3101 0.7977 0.000 0.000 0.000 0.756 0.000 0.244
#> SRR1643290 4 0.3221 0.7901 0.000 0.000 0.000 0.736 0.000 0.264
#> SRR1643291 4 0.3428 0.7724 0.000 0.000 0.000 0.696 0.000 0.304
#> SRR1643292 4 0.3076 0.7989 0.000 0.000 0.000 0.760 0.000 0.240
#> SRR1643293 4 0.2969 0.8036 0.000 0.000 0.000 0.776 0.000 0.224
#> SRR1643294 4 0.3050 0.8001 0.000 0.000 0.000 0.764 0.000 0.236
#> SRR1643295 4 0.3244 0.7890 0.000 0.000 0.000 0.732 0.000 0.268
#> SRR1643296 4 0.3221 0.7908 0.000 0.000 0.000 0.736 0.000 0.264
#> SRR1643297 4 0.3101 0.7975 0.000 0.000 0.000 0.756 0.000 0.244
#> SRR1643298 4 0.3126 0.7962 0.000 0.000 0.000 0.752 0.000 0.248
#> SRR1643299 4 0.3076 0.7989 0.000 0.000 0.000 0.760 0.000 0.240
#> SRR1643300 4 0.3198 0.7920 0.000 0.000 0.000 0.740 0.000 0.260
#> SRR1643301 4 0.2454 0.7653 0.160 0.000 0.000 0.840 0.000 0.000
#> SRR1643302 4 0.3151 0.6463 0.252 0.000 0.000 0.748 0.000 0.000
#> SRR1643303 4 0.2527 0.7566 0.168 0.000 0.000 0.832 0.000 0.000
#> SRR1643304 4 0.2697 0.7378 0.188 0.000 0.000 0.812 0.000 0.000
#> SRR1643305 4 0.2491 0.7626 0.164 0.000 0.000 0.836 0.000 0.000
#> SRR1643306 4 0.1714 0.8151 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643307 4 0.2941 0.7043 0.220 0.000 0.000 0.780 0.000 0.000
#> SRR1643308 4 0.2300 0.7782 0.144 0.000 0.000 0.856 0.000 0.000
#> SRR1643309 4 0.2219 0.7843 0.136 0.000 0.000 0.864 0.000 0.000
#> SRR1643310 4 0.1444 0.8254 0.072 0.000 0.000 0.928 0.000 0.000
#> SRR1643311 4 0.1765 0.8129 0.096 0.000 0.000 0.904 0.000 0.000
#> SRR1643312 4 0.2912 0.7028 0.216 0.000 0.000 0.784 0.000 0.000
#> SRR1643313 4 0.2762 0.7284 0.196 0.000 0.000 0.804 0.000 0.000
#> SRR1643314 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643315 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643316 1 0.0146 0.9598 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643317 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643318 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643319 1 0.0146 0.9597 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643320 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643321 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643322 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643323 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643324 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643325 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643326 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643327 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643328 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643329 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643330 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643331 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643332 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643333 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643334 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643335 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643336 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643337 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643338 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643339 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643340 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643341 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643342 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643343 4 0.3126 0.6862 0.248 0.000 0.000 0.752 0.000 0.000
#> SRR1643344 4 0.3101 0.6903 0.244 0.000 0.000 0.756 0.000 0.000
#> SRR1643345 4 0.3126 0.6864 0.248 0.000 0.000 0.752 0.000 0.000
#> SRR1643346 4 0.3221 0.6686 0.264 0.000 0.000 0.736 0.000 0.000
#> SRR1643347 4 0.3175 0.6766 0.256 0.000 0.000 0.744 0.000 0.000
#> SRR1643348 4 0.3151 0.6820 0.252 0.000 0.000 0.748 0.000 0.000
#> SRR1643349 4 0.3050 0.6971 0.236 0.000 0.000 0.764 0.000 0.000
#> SRR1643350 4 0.3198 0.6733 0.260 0.000 0.000 0.740 0.000 0.000
#> SRR1643351 4 0.3126 0.6856 0.248 0.000 0.000 0.752 0.000 0.000
#> SRR1643352 4 0.3151 0.6820 0.252 0.000 0.000 0.748 0.000 0.000
#> SRR1643353 4 0.3126 0.6862 0.248 0.000 0.000 0.752 0.000 0.000
#> SRR1643354 4 0.3076 0.6938 0.240 0.000 0.000 0.760 0.000 0.000
#> SRR1643355 4 0.3050 0.6984 0.236 0.000 0.000 0.764 0.000 0.000
#> SRR1643356 4 0.3126 0.6863 0.248 0.000 0.000 0.752 0.000 0.000
#> SRR1643357 4 0.3101 0.6901 0.244 0.000 0.000 0.756 0.000 0.000
#> SRR1643358 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643359 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643360 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643361 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643362 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643363 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643364 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643365 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643366 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643367 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643368 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643369 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643370 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643371 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643372 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643373 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643374 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643375 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643376 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643377 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643378 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643379 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643380 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643381 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643382 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643383 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643384 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643385 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643386 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643387 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643388 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643389 4 0.0000 0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643390 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643391 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643392 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643393 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643394 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643395 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643396 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643397 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643398 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643399 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643400 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643401 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643402 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643403 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643404 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643405 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643406 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643407 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643408 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643409 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643410 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643411 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643412 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643413 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643414 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643415 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643416 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643417 1 0.0000 0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643418 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643419 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643420 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643421 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643422 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643423 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643424 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643425 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643426 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643427 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643428 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643429 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643430 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643431 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643432 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643433 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643434 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643435 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643436 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643437 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643438 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643439 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643440 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643441 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643442 4 0.3672 0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643443 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643444 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643445 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643446 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643447 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643448 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643449 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643450 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643451 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643452 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643453 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643454 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643455 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643456 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643457 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643458 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643459 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643460 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643461 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643462 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643463 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643464 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643466 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643467 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643468 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643469 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643470 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643471 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643472 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643473 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643474 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643475 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643477 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643478 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643479 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643480 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643481 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643482 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643483 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643484 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643485 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643486 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643487 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643488 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643489 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643490 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643491 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643492 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643493 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643494 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643495 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643496 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643497 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643498 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643499 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643500 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643501 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643502 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643503 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643504 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643505 5 0.3866 0.0626 0.000 0.484 0.000 0.000 0.516 0.000
#> SRR1643506 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643507 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643508 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643509 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643510 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643511 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643512 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643513 2 0.0000 0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643531 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643532 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643533 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643534 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643535 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643536 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643537 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643538 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643539 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643540 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643541 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643542 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643543 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643544 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643514 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643515 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643516 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643517 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643518 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643519 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643520 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643521 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643522 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643523 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643524 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643525 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643526 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643527 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643528 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643529 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643530 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643545 2 0.0146 0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643546 2 0.0146 0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643547 2 0.0146 0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643548 2 0.0146 0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643549 2 0.0146 0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643550 2 0.0458 0.9840 0.000 0.984 0.000 0.000 0.016 0.000
#> SRR1643551 2 0.0260 0.9924 0.000 0.992 0.000 0.000 0.008 0.000
#> SRR1643552 2 0.0146 0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643553 2 0.0146 0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643554 2 0.0146 0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643555 2 0.0146 0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643556 2 0.0146 0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643558 2 0.0146 0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643559 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643560 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643561 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643562 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643563 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643564 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643565 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643566 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643567 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643568 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643569 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643570 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643571 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643572 5 0.0000 0.9906 0.000 0.000 0.000 0.000 1.000 0.000
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["SD", "mclust"]
# you can also extract it by
# res = res_list["SD:mclust"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'SD' method.
#> Subgroups are detected by 'mclust' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 6.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.4350 0.566 0.566
#> 3 3 1.000 0.996 0.998 0.2939 0.874 0.777
#> 4 4 0.977 0.941 0.968 0.2623 0.840 0.637
#> 5 5 0.955 0.881 0.950 0.0796 0.937 0.780
#> 6 6 0.968 0.902 0.946 0.0386 0.953 0.803
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 6
#> attr(,"optional")
#> [1] 2 3 4 5
There is also optional best \(k\) = 2 3 4 5 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.141 0.967 0.964 0 0.036
#> SRR1643168 1 0.141 0.967 0.964 0 0.036
#> SRR1643169 1 0.141 0.967 0.964 0 0.036
#> SRR1643170 1 0.141 0.967 0.964 0 0.036
#> SRR1643171 1 0.000 0.996 1.000 0 0.000
#> SRR1643172 1 0.000 0.996 1.000 0 0.000
#> SRR1643173 1 0.000 0.996 1.000 0 0.000
#> SRR1643174 1 0.000 0.996 1.000 0 0.000
#> SRR1643175 1 0.000 0.996 1.000 0 0.000
#> SRR1643176 1 0.000 0.996 1.000 0 0.000
#> SRR1643177 1 0.000 0.996 1.000 0 0.000
#> SRR1643178 1 0.000 0.996 1.000 0 0.000
#> SRR1643180 1 0.141 0.967 0.964 0 0.036
#> SRR1643181 1 0.141 0.967 0.964 0 0.036
#> SRR1643182 1 0.141 0.967 0.964 0 0.036
#> SRR1643183 1 0.129 0.970 0.968 0 0.032
#> SRR1643184 1 0.129 0.970 0.968 0 0.032
#> SRR1643185 1 0.129 0.970 0.968 0 0.032
#> SRR1643186 1 0.129 0.970 0.968 0 0.032
#> SRR1643187 1 0.141 0.967 0.964 0 0.036
#> SRR1643188 1 0.141 0.967 0.964 0 0.036
#> SRR1643189 1 0.141 0.967 0.964 0 0.036
#> SRR1643190 1 0.141 0.967 0.964 0 0.036
#> SRR1643191 1 0.141 0.967 0.964 0 0.036
#> SRR1643192 1 0.141 0.967 0.964 0 0.036
#> SRR1643193 1 0.141 0.967 0.964 0 0.036
#> SRR1643194 1 0.141 0.967 0.964 0 0.036
#> SRR1643195 1 0.000 0.996 1.000 0 0.000
#> SRR1643196 1 0.000 0.996 1.000 0 0.000
#> SRR1643197 1 0.000 0.996 1.000 0 0.000
#> SRR1643198 1 0.000 0.996 1.000 0 0.000
#> SRR1643199 1 0.141 0.967 0.964 0 0.036
#> SRR1643200 1 0.141 0.967 0.964 0 0.036
#> SRR1643201 1 0.141 0.967 0.964 0 0.036
#> SRR1643202 1 0.141 0.967 0.964 0 0.036
#> SRR1643203 1 0.141 0.967 0.964 0 0.036
#> SRR1643204 1 0.141 0.967 0.964 0 0.036
#> SRR1643205 3 0.000 1.000 0.000 0 1.000
#> SRR1643206 3 0.000 1.000 0.000 0 1.000
#> SRR1643207 3 0.000 1.000 0.000 0 1.000
#> SRR1643208 3 0.000 1.000 0.000 0 1.000
#> SRR1643209 3 0.000 1.000 0.000 0 1.000
#> SRR1643210 3 0.000 1.000 0.000 0 1.000
#> SRR1643211 3 0.000 1.000 0.000 0 1.000
#> SRR1643212 3 0.000 1.000 0.000 0 1.000
#> SRR1643213 3 0.000 1.000 0.000 0 1.000
#> SRR1643214 3 0.000 1.000 0.000 0 1.000
#> SRR1643215 3 0.000 1.000 0.000 0 1.000
#> SRR1643216 3 0.000 1.000 0.000 0 1.000
#> SRR1643217 3 0.000 1.000 0.000 0 1.000
#> SRR1643218 3 0.000 1.000 0.000 0 1.000
#> SRR1643219 3 0.000 1.000 0.000 0 1.000
#> SRR1643220 3 0.000 1.000 0.000 0 1.000
#> SRR1643221 3 0.000 1.000 0.000 0 1.000
#> SRR1643222 3 0.000 1.000 0.000 0 1.000
#> SRR1643223 3 0.000 1.000 0.000 0 1.000
#> SRR1643224 3 0.000 1.000 0.000 0 1.000
#> SRR1643225 3 0.000 1.000 0.000 0 1.000
#> SRR1643226 3 0.000 1.000 0.000 0 1.000
#> SRR1643227 3 0.000 1.000 0.000 0 1.000
#> SRR1643228 3 0.000 1.000 0.000 0 1.000
#> SRR1643229 3 0.000 1.000 0.000 0 1.000
#> SRR1643230 3 0.000 1.000 0.000 0 1.000
#> SRR1643231 3 0.000 1.000 0.000 0 1.000
#> SRR1643232 3 0.000 1.000 0.000 0 1.000
#> SRR1643233 3 0.000 1.000 0.000 0 1.000
#> SRR1643234 3 0.000 1.000 0.000 0 1.000
#> SRR1643235 3 0.000 1.000 0.000 0 1.000
#> SRR1643236 3 0.000 1.000 0.000 0 1.000
#> SRR1643237 3 0.000 1.000 0.000 0 1.000
#> SRR1643238 3 0.000 1.000 0.000 0 1.000
#> SRR1643239 3 0.000 1.000 0.000 0 1.000
#> SRR1643240 3 0.000 1.000 0.000 0 1.000
#> SRR1643241 3 0.000 1.000 0.000 0 1.000
#> SRR1643242 3 0.000 1.000 0.000 0 1.000
#> SRR1643243 3 0.000 1.000 0.000 0 1.000
#> SRR1643245 3 0.000 1.000 0.000 0 1.000
#> SRR1643246 3 0.000 1.000 0.000 0 1.000
#> SRR1643247 3 0.000 1.000 0.000 0 1.000
#> SRR1643248 3 0.000 1.000 0.000 0 1.000
#> SRR1643249 3 0.000 1.000 0.000 0 1.000
#> SRR1643250 1 0.000 0.996 1.000 0 0.000
#> SRR1643251 1 0.000 0.996 1.000 0 0.000
#> SRR1643252 1 0.000 0.996 1.000 0 0.000
#> SRR1643253 1 0.000 0.996 1.000 0 0.000
#> SRR1643254 1 0.000 0.996 1.000 0 0.000
#> SRR1643255 1 0.000 0.996 1.000 0 0.000
#> SRR1643256 1 0.000 0.996 1.000 0 0.000
#> SRR1643257 1 0.000 0.996 1.000 0 0.000
#> SRR1643258 1 0.000 0.996 1.000 0 0.000
#> SRR1643259 1 0.000 0.996 1.000 0 0.000
#> SRR1643260 1 0.000 0.996 1.000 0 0.000
#> SRR1643261 1 0.000 0.996 1.000 0 0.000
#> SRR1643262 1 0.000 0.996 1.000 0 0.000
#> SRR1643263 1 0.000 0.996 1.000 0 0.000
#> SRR1643264 1 0.000 0.996 1.000 0 0.000
#> SRR1643266 1 0.000 0.996 1.000 0 0.000
#> SRR1643267 1 0.000 0.996 1.000 0 0.000
#> SRR1643268 1 0.000 0.996 1.000 0 0.000
#> SRR1643269 1 0.000 0.996 1.000 0 0.000
#> SRR1643270 1 0.000 0.996 1.000 0 0.000
#> SRR1643271 1 0.000 0.996 1.000 0 0.000
#> SRR1643272 1 0.000 0.996 1.000 0 0.000
#> SRR1643273 1 0.000 0.996 1.000 0 0.000
#> SRR1643274 1 0.000 0.996 1.000 0 0.000
#> SRR1643275 1 0.000 0.996 1.000 0 0.000
#> SRR1643276 1 0.000 0.996 1.000 0 0.000
#> SRR1643277 1 0.000 0.996 1.000 0 0.000
#> SRR1643278 1 0.000 0.996 1.000 0 0.000
#> SRR1643279 1 0.000 0.996 1.000 0 0.000
#> SRR1643280 1 0.000 0.996 1.000 0 0.000
#> SRR1643281 1 0.000 0.996 1.000 0 0.000
#> SRR1643282 1 0.000 0.996 1.000 0 0.000
#> SRR1643283 1 0.000 0.996 1.000 0 0.000
#> SRR1643284 1 0.000 0.996 1.000 0 0.000
#> SRR1643285 1 0.000 0.996 1.000 0 0.000
#> SRR1643286 1 0.000 0.996 1.000 0 0.000
#> SRR1643287 1 0.000 0.996 1.000 0 0.000
#> SRR1643288 1 0.000 0.996 1.000 0 0.000
#> SRR1643289 1 0.000 0.996 1.000 0 0.000
#> SRR1643290 1 0.000 0.996 1.000 0 0.000
#> SRR1643291 1 0.000 0.996 1.000 0 0.000
#> SRR1643292 1 0.000 0.996 1.000 0 0.000
#> SRR1643293 1 0.000 0.996 1.000 0 0.000
#> SRR1643294 1 0.000 0.996 1.000 0 0.000
#> SRR1643295 1 0.000 0.996 1.000 0 0.000
#> SRR1643296 1 0.000 0.996 1.000 0 0.000
#> SRR1643297 1 0.000 0.996 1.000 0 0.000
#> SRR1643298 1 0.000 0.996 1.000 0 0.000
#> SRR1643299 1 0.000 0.996 1.000 0 0.000
#> SRR1643300 1 0.000 0.996 1.000 0 0.000
#> SRR1643301 1 0.000 0.996 1.000 0 0.000
#> SRR1643302 1 0.000 0.996 1.000 0 0.000
#> SRR1643303 1 0.000 0.996 1.000 0 0.000
#> SRR1643304 1 0.000 0.996 1.000 0 0.000
#> SRR1643305 1 0.000 0.996 1.000 0 0.000
#> SRR1643306 1 0.000 0.996 1.000 0 0.000
#> SRR1643307 1 0.000 0.996 1.000 0 0.000
#> SRR1643308 1 0.000 0.996 1.000 0 0.000
#> SRR1643309 1 0.000 0.996 1.000 0 0.000
#> SRR1643310 1 0.000 0.996 1.000 0 0.000
#> SRR1643311 1 0.000 0.996 1.000 0 0.000
#> SRR1643312 1 0.000 0.996 1.000 0 0.000
#> SRR1643313 1 0.000 0.996 1.000 0 0.000
#> SRR1643314 1 0.000 0.996 1.000 0 0.000
#> SRR1643315 1 0.000 0.996 1.000 0 0.000
#> SRR1643316 1 0.000 0.996 1.000 0 0.000
#> SRR1643317 1 0.000 0.996 1.000 0 0.000
#> SRR1643318 1 0.000 0.996 1.000 0 0.000
#> SRR1643319 1 0.000 0.996 1.000 0 0.000
#> SRR1643320 1 0.000 0.996 1.000 0 0.000
#> SRR1643321 1 0.000 0.996 1.000 0 0.000
#> SRR1643322 1 0.000 0.996 1.000 0 0.000
#> SRR1643323 1 0.000 0.996 1.000 0 0.000
#> SRR1643324 1 0.000 0.996 1.000 0 0.000
#> SRR1643325 1 0.000 0.996 1.000 0 0.000
#> SRR1643326 1 0.000 0.996 1.000 0 0.000
#> SRR1643327 1 0.000 0.996 1.000 0 0.000
#> SRR1643328 1 0.000 0.996 1.000 0 0.000
#> SRR1643329 1 0.000 0.996 1.000 0 0.000
#> SRR1643330 1 0.000 0.996 1.000 0 0.000
#> SRR1643331 1 0.000 0.996 1.000 0 0.000
#> SRR1643332 1 0.000 0.996 1.000 0 0.000
#> SRR1643333 1 0.000 0.996 1.000 0 0.000
#> SRR1643334 1 0.000 0.996 1.000 0 0.000
#> SRR1643335 1 0.000 0.996 1.000 0 0.000
#> SRR1643336 1 0.000 0.996 1.000 0 0.000
#> SRR1643337 1 0.000 0.996 1.000 0 0.000
#> SRR1643338 1 0.000 0.996 1.000 0 0.000
#> SRR1643339 1 0.000 0.996 1.000 0 0.000
#> SRR1643340 1 0.000 0.996 1.000 0 0.000
#> SRR1643341 1 0.000 0.996 1.000 0 0.000
#> SRR1643342 1 0.000 0.996 1.000 0 0.000
#> SRR1643343 1 0.000 0.996 1.000 0 0.000
#> SRR1643344 1 0.000 0.996 1.000 0 0.000
#> SRR1643345 1 0.000 0.996 1.000 0 0.000
#> SRR1643346 1 0.000 0.996 1.000 0 0.000
#> SRR1643347 1 0.000 0.996 1.000 0 0.000
#> SRR1643348 1 0.000 0.996 1.000 0 0.000
#> SRR1643349 1 0.000 0.996 1.000 0 0.000
#> SRR1643350 1 0.000 0.996 1.000 0 0.000
#> SRR1643351 1 0.000 0.996 1.000 0 0.000
#> SRR1643352 1 0.000 0.996 1.000 0 0.000
#> SRR1643353 1 0.000 0.996 1.000 0 0.000
#> SRR1643354 1 0.000 0.996 1.000 0 0.000
#> SRR1643355 1 0.000 0.996 1.000 0 0.000
#> SRR1643356 1 0.000 0.996 1.000 0 0.000
#> SRR1643357 1 0.000 0.996 1.000 0 0.000
#> SRR1643358 1 0.000 0.996 1.000 0 0.000
#> SRR1643359 1 0.000 0.996 1.000 0 0.000
#> SRR1643360 1 0.000 0.996 1.000 0 0.000
#> SRR1643361 1 0.000 0.996 1.000 0 0.000
#> SRR1643362 1 0.000 0.996 1.000 0 0.000
#> SRR1643363 1 0.000 0.996 1.000 0 0.000
#> SRR1643364 1 0.000 0.996 1.000 0 0.000
#> SRR1643365 1 0.000 0.996 1.000 0 0.000
#> SRR1643366 1 0.000 0.996 1.000 0 0.000
#> SRR1643367 1 0.000 0.996 1.000 0 0.000
#> SRR1643368 1 0.000 0.996 1.000 0 0.000
#> SRR1643369 1 0.000 0.996 1.000 0 0.000
#> SRR1643370 1 0.000 0.996 1.000 0 0.000
#> SRR1643371 1 0.000 0.996 1.000 0 0.000
#> SRR1643372 1 0.000 0.996 1.000 0 0.000
#> SRR1643373 1 0.000 0.996 1.000 0 0.000
#> SRR1643374 1 0.000 0.996 1.000 0 0.000
#> SRR1643375 1 0.000 0.996 1.000 0 0.000
#> SRR1643376 1 0.000 0.996 1.000 0 0.000
#> SRR1643377 1 0.000 0.996 1.000 0 0.000
#> SRR1643378 1 0.000 0.996 1.000 0 0.000
#> SRR1643379 1 0.000 0.996 1.000 0 0.000
#> SRR1643380 1 0.000 0.996 1.000 0 0.000
#> SRR1643381 1 0.000 0.996 1.000 0 0.000
#> SRR1643382 1 0.000 0.996 1.000 0 0.000
#> SRR1643383 1 0.000 0.996 1.000 0 0.000
#> SRR1643384 1 0.000 0.996 1.000 0 0.000
#> SRR1643385 1 0.000 0.996 1.000 0 0.000
#> SRR1643386 1 0.000 0.996 1.000 0 0.000
#> SRR1643387 1 0.000 0.996 1.000 0 0.000
#> SRR1643388 1 0.000 0.996 1.000 0 0.000
#> SRR1643389 1 0.000 0.996 1.000 0 0.000
#> SRR1643390 1 0.000 0.996 1.000 0 0.000
#> SRR1643391 1 0.000 0.996 1.000 0 0.000
#> SRR1643392 1 0.000 0.996 1.000 0 0.000
#> SRR1643393 1 0.000 0.996 1.000 0 0.000
#> SRR1643394 1 0.000 0.996 1.000 0 0.000
#> SRR1643395 1 0.000 0.996 1.000 0 0.000
#> SRR1643396 1 0.000 0.996 1.000 0 0.000
#> SRR1643397 1 0.000 0.996 1.000 0 0.000
#> SRR1643398 1 0.000 0.996 1.000 0 0.000
#> SRR1643399 1 0.000 0.996 1.000 0 0.000
#> SRR1643400 1 0.000 0.996 1.000 0 0.000
#> SRR1643401 1 0.000 0.996 1.000 0 0.000
#> SRR1643402 1 0.000 0.996 1.000 0 0.000
#> SRR1643403 1 0.000 0.996 1.000 0 0.000
#> SRR1643404 1 0.000 0.996 1.000 0 0.000
#> SRR1643405 1 0.000 0.996 1.000 0 0.000
#> SRR1643406 1 0.000 0.996 1.000 0 0.000
#> SRR1643407 1 0.000 0.996 1.000 0 0.000
#> SRR1643408 1 0.000 0.996 1.000 0 0.000
#> SRR1643409 1 0.000 0.996 1.000 0 0.000
#> SRR1643410 1 0.000 0.996 1.000 0 0.000
#> SRR1643411 1 0.000 0.996 1.000 0 0.000
#> SRR1643412 1 0.000 0.996 1.000 0 0.000
#> SRR1643413 1 0.000 0.996 1.000 0 0.000
#> SRR1643414 1 0.000 0.996 1.000 0 0.000
#> SRR1643415 1 0.000 0.996 1.000 0 0.000
#> SRR1643416 1 0.000 0.996 1.000 0 0.000
#> SRR1643417 1 0.000 0.996 1.000 0 0.000
#> SRR1643418 1 0.000 0.996 1.000 0 0.000
#> SRR1643419 1 0.000 0.996 1.000 0 0.000
#> SRR1643420 1 0.000 0.996 1.000 0 0.000
#> SRR1643421 1 0.000 0.996 1.000 0 0.000
#> SRR1643422 1 0.000 0.996 1.000 0 0.000
#> SRR1643423 1 0.000 0.996 1.000 0 0.000
#> SRR1643424 1 0.000 0.996 1.000 0 0.000
#> SRR1643425 1 0.000 0.996 1.000 0 0.000
#> SRR1643426 1 0.000 0.996 1.000 0 0.000
#> SRR1643427 1 0.000 0.996 1.000 0 0.000
#> SRR1643428 1 0.000 0.996 1.000 0 0.000
#> SRR1643429 1 0.000 0.996 1.000 0 0.000
#> SRR1643430 1 0.000 0.996 1.000 0 0.000
#> SRR1643431 1 0.000 0.996 1.000 0 0.000
#> SRR1643432 1 0.000 0.996 1.000 0 0.000
#> SRR1643433 1 0.000 0.996 1.000 0 0.000
#> SRR1643434 1 0.000 0.996 1.000 0 0.000
#> SRR1643435 1 0.000 0.996 1.000 0 0.000
#> SRR1643436 1 0.000 0.996 1.000 0 0.000
#> SRR1643437 1 0.000 0.996 1.000 0 0.000
#> SRR1643438 1 0.000 0.996 1.000 0 0.000
#> SRR1643439 1 0.000 0.996 1.000 0 0.000
#> SRR1643440 1 0.000 0.996 1.000 0 0.000
#> SRR1643441 1 0.000 0.996 1.000 0 0.000
#> SRR1643442 1 0.000 0.996 1.000 0 0.000
#> SRR1643443 2 0.000 1.000 0.000 1 0.000
#> SRR1643444 2 0.000 1.000 0.000 1 0.000
#> SRR1643445 2 0.000 1.000 0.000 1 0.000
#> SRR1643446 2 0.000 1.000 0.000 1 0.000
#> SRR1643447 2 0.000 1.000 0.000 1 0.000
#> SRR1643448 2 0.000 1.000 0.000 1 0.000
#> SRR1643449 2 0.000 1.000 0.000 1 0.000
#> SRR1643450 2 0.000 1.000 0.000 1 0.000
#> SRR1643451 2 0.000 1.000 0.000 1 0.000
#> SRR1643452 2 0.000 1.000 0.000 1 0.000
#> SRR1643453 2 0.000 1.000 0.000 1 0.000
#> SRR1643454 2 0.000 1.000 0.000 1 0.000
#> SRR1643455 2 0.000 1.000 0.000 1 0.000
#> SRR1643456 2 0.000 1.000 0.000 1 0.000
#> SRR1643457 2 0.000 1.000 0.000 1 0.000
#> SRR1643458 2 0.000 1.000 0.000 1 0.000
#> SRR1643459 2 0.000 1.000 0.000 1 0.000
#> SRR1643460 2 0.000 1.000 0.000 1 0.000
#> SRR1643461 2 0.000 1.000 0.000 1 0.000
#> SRR1643462 2 0.000 1.000 0.000 1 0.000
#> SRR1643463 2 0.000 1.000 0.000 1 0.000
#> SRR1643464 2 0.000 1.000 0.000 1 0.000
#> SRR1643466 2 0.000 1.000 0.000 1 0.000
#> SRR1643467 2 0.000 1.000 0.000 1 0.000
#> SRR1643468 2 0.000 1.000 0.000 1 0.000
#> SRR1643469 2 0.000 1.000 0.000 1 0.000
#> SRR1643470 2 0.000 1.000 0.000 1 0.000
#> SRR1643471 2 0.000 1.000 0.000 1 0.000
#> SRR1643472 2 0.000 1.000 0.000 1 0.000
#> SRR1643473 2 0.000 1.000 0.000 1 0.000
#> SRR1643474 2 0.000 1.000 0.000 1 0.000
#> SRR1643475 2 0.000 1.000 0.000 1 0.000
#> SRR1643477 2 0.000 1.000 0.000 1 0.000
#> SRR1643478 2 0.000 1.000 0.000 1 0.000
#> SRR1643479 2 0.000 1.000 0.000 1 0.000
#> SRR1643480 2 0.000 1.000 0.000 1 0.000
#> SRR1643481 2 0.000 1.000 0.000 1 0.000
#> SRR1643482 2 0.000 1.000 0.000 1 0.000
#> SRR1643483 2 0.000 1.000 0.000 1 0.000
#> SRR1643484 2 0.000 1.000 0.000 1 0.000
#> SRR1643485 2 0.000 1.000 0.000 1 0.000
#> SRR1643486 2 0.000 1.000 0.000 1 0.000
#> SRR1643487 2 0.000 1.000 0.000 1 0.000
#> SRR1643488 2 0.000 1.000 0.000 1 0.000
#> SRR1643489 2 0.000 1.000 0.000 1 0.000
#> SRR1643490 2 0.000 1.000 0.000 1 0.000
#> SRR1643491 2 0.000 1.000 0.000 1 0.000
#> SRR1643492 2 0.000 1.000 0.000 1 0.000
#> SRR1643493 2 0.000 1.000 0.000 1 0.000
#> SRR1643494 2 0.000 1.000 0.000 1 0.000
#> SRR1643495 2 0.000 1.000 0.000 1 0.000
#> SRR1643496 2 0.000 1.000 0.000 1 0.000
#> SRR1643497 2 0.000 1.000 0.000 1 0.000
#> SRR1643498 2 0.000 1.000 0.000 1 0.000
#> SRR1643499 2 0.000 1.000 0.000 1 0.000
#> SRR1643500 2 0.000 1.000 0.000 1 0.000
#> SRR1643501 2 0.000 1.000 0.000 1 0.000
#> SRR1643502 2 0.000 1.000 0.000 1 0.000
#> SRR1643503 2 0.000 1.000 0.000 1 0.000
#> SRR1643504 2 0.000 1.000 0.000 1 0.000
#> SRR1643505 2 0.000 1.000 0.000 1 0.000
#> SRR1643506 2 0.000 1.000 0.000 1 0.000
#> SRR1643507 2 0.000 1.000 0.000 1 0.000
#> SRR1643508 2 0.000 1.000 0.000 1 0.000
#> SRR1643509 2 0.000 1.000 0.000 1 0.000
#> SRR1643510 2 0.000 1.000 0.000 1 0.000
#> SRR1643511 2 0.000 1.000 0.000 1 0.000
#> SRR1643512 2 0.000 1.000 0.000 1 0.000
#> SRR1643513 2 0.000 1.000 0.000 1 0.000
#> SRR1643531 2 0.000 1.000 0.000 1 0.000
#> SRR1643532 2 0.000 1.000 0.000 1 0.000
#> SRR1643533 2 0.000 1.000 0.000 1 0.000
#> SRR1643534 2 0.000 1.000 0.000 1 0.000
#> SRR1643535 2 0.000 1.000 0.000 1 0.000
#> SRR1643536 2 0.000 1.000 0.000 1 0.000
#> SRR1643537 2 0.000 1.000 0.000 1 0.000
#> SRR1643538 2 0.000 1.000 0.000 1 0.000
#> SRR1643539 2 0.000 1.000 0.000 1 0.000
#> SRR1643540 2 0.000 1.000 0.000 1 0.000
#> SRR1643541 2 0.000 1.000 0.000 1 0.000
#> SRR1643542 2 0.000 1.000 0.000 1 0.000
#> SRR1643543 2 0.000 1.000 0.000 1 0.000
#> SRR1643544 2 0.000 1.000 0.000 1 0.000
#> SRR1643514 2 0.000 1.000 0.000 1 0.000
#> SRR1643515 2 0.000 1.000 0.000 1 0.000
#> SRR1643516 2 0.000 1.000 0.000 1 0.000
#> SRR1643517 2 0.000 1.000 0.000 1 0.000
#> SRR1643518 2 0.000 1.000 0.000 1 0.000
#> SRR1643519 2 0.000 1.000 0.000 1 0.000
#> SRR1643520 2 0.000 1.000 0.000 1 0.000
#> SRR1643521 2 0.000 1.000 0.000 1 0.000
#> SRR1643522 2 0.000 1.000 0.000 1 0.000
#> SRR1643523 2 0.000 1.000 0.000 1 0.000
#> SRR1643524 2 0.000 1.000 0.000 1 0.000
#> SRR1643525 2 0.000 1.000 0.000 1 0.000
#> SRR1643526 2 0.000 1.000 0.000 1 0.000
#> SRR1643527 2 0.000 1.000 0.000 1 0.000
#> SRR1643528 2 0.000 1.000 0.000 1 0.000
#> SRR1643529 2 0.000 1.000 0.000 1 0.000
#> SRR1643530 2 0.000 1.000 0.000 1 0.000
#> SRR1643545 2 0.000 1.000 0.000 1 0.000
#> SRR1643546 2 0.000 1.000 0.000 1 0.000
#> SRR1643547 2 0.000 1.000 0.000 1 0.000
#> SRR1643548 2 0.000 1.000 0.000 1 0.000
#> SRR1643549 2 0.000 1.000 0.000 1 0.000
#> SRR1643550 2 0.000 1.000 0.000 1 0.000
#> SRR1643551 2 0.000 1.000 0.000 1 0.000
#> SRR1643552 2 0.000 1.000 0.000 1 0.000
#> SRR1643553 2 0.000 1.000 0.000 1 0.000
#> SRR1643554 2 0.000 1.000 0.000 1 0.000
#> SRR1643555 2 0.000 1.000 0.000 1 0.000
#> SRR1643556 2 0.000 1.000 0.000 1 0.000
#> SRR1643558 2 0.000 1.000 0.000 1 0.000
#> SRR1643559 2 0.000 1.000 0.000 1 0.000
#> SRR1643560 2 0.000 1.000 0.000 1 0.000
#> SRR1643561 2 0.000 1.000 0.000 1 0.000
#> SRR1643562 2 0.000 1.000 0.000 1 0.000
#> SRR1643563 2 0.000 1.000 0.000 1 0.000
#> SRR1643564 2 0.000 1.000 0.000 1 0.000
#> SRR1643565 2 0.000 1.000 0.000 1 0.000
#> SRR1643566 2 0.000 1.000 0.000 1 0.000
#> SRR1643567 2 0.000 1.000 0.000 1 0.000
#> SRR1643568 2 0.000 1.000 0.000 1 0.000
#> SRR1643569 2 0.000 1.000 0.000 1 0.000
#> SRR1643570 2 0.000 1.000 0.000 1 0.000
#> SRR1643571 2 0.000 1.000 0.000 1 0.000
#> SRR1643572 2 0.000 1.000 0.000 1 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643168 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643169 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643170 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643171 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643172 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643173 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643174 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643175 1 0.4697 0.581 0.644 0 0 0.356
#> SRR1643176 1 0.4713 0.575 0.640 0 0 0.360
#> SRR1643177 1 0.4713 0.575 0.640 0 0 0.360
#> SRR1643178 1 0.4679 0.586 0.648 0 0 0.352
#> SRR1643180 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643181 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643182 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643183 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643184 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643185 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643186 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643187 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643188 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643189 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643190 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643191 1 0.1389 0.867 0.952 0 0 0.048
#> SRR1643192 1 0.1302 0.867 0.956 0 0 0.044
#> SRR1643193 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643194 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643195 1 0.4164 0.679 0.736 0 0 0.264
#> SRR1643196 1 0.4164 0.679 0.736 0 0 0.264
#> SRR1643197 1 0.1389 0.867 0.952 0 0 0.048
#> SRR1643198 1 0.1389 0.867 0.952 0 0 0.048
#> SRR1643199 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643200 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643201 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643202 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643203 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643204 1 0.0000 0.852 1.000 0 0 0.000
#> SRR1643205 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643206 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643207 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643208 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643209 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643210 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643211 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643212 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643213 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643214 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643215 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643216 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643217 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643218 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643219 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643220 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643221 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643222 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643223 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643224 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643225 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643226 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643227 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643228 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643229 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643230 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643231 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643232 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643233 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643234 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643235 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643236 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643237 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643238 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643239 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643240 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643241 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643242 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643243 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643245 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643246 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643247 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643248 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643249 3 0.0000 1.000 0.000 0 1 0.000
#> SRR1643250 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643251 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643252 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643253 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643254 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643255 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643256 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643257 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643258 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643259 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643260 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643261 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643262 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643263 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643264 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643266 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643267 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643268 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643269 4 0.0336 0.980 0.008 0 0 0.992
#> SRR1643270 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643271 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643272 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643273 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643274 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643275 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643276 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643277 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643278 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643279 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643280 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643281 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643282 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643283 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643284 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643285 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643286 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643287 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643288 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643289 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643290 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643291 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643292 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643293 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643294 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643295 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643296 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643297 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643298 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643299 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643300 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643301 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643302 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643303 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643304 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643305 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643306 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643307 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643308 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643309 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643310 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643311 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643312 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643313 4 0.1022 0.974 0.032 0 0 0.968
#> SRR1643314 4 0.1716 0.944 0.064 0 0 0.936
#> SRR1643315 4 0.1867 0.935 0.072 0 0 0.928
#> SRR1643316 4 0.1637 0.948 0.060 0 0 0.940
#> SRR1643317 4 0.1716 0.944 0.064 0 0 0.936
#> SRR1643318 4 0.1637 0.948 0.060 0 0 0.940
#> SRR1643319 4 0.1637 0.948 0.060 0 0 0.940
#> SRR1643320 4 0.1637 0.948 0.060 0 0 0.940
#> SRR1643321 4 0.1637 0.948 0.060 0 0 0.940
#> SRR1643322 4 0.1637 0.948 0.060 0 0 0.940
#> SRR1643323 4 0.1637 0.948 0.060 0 0 0.940
#> SRR1643324 4 0.1637 0.948 0.060 0 0 0.940
#> SRR1643325 4 0.1637 0.948 0.060 0 0 0.940
#> SRR1643326 4 0.1637 0.948 0.060 0 0 0.940
#> SRR1643327 4 0.1637 0.948 0.060 0 0 0.940
#> SRR1643328 1 0.1716 0.867 0.936 0 0 0.064
#> SRR1643329 1 0.1716 0.867 0.936 0 0 0.064
#> SRR1643330 1 0.1716 0.867 0.936 0 0 0.064
#> SRR1643331 1 0.1940 0.864 0.924 0 0 0.076
#> SRR1643332 1 0.1716 0.867 0.936 0 0 0.064
#> SRR1643333 1 0.1867 0.865 0.928 0 0 0.072
#> SRR1643334 1 0.1557 0.867 0.944 0 0 0.056
#> SRR1643335 1 0.2011 0.862 0.920 0 0 0.080
#> SRR1643336 1 0.1867 0.865 0.928 0 0 0.072
#> SRR1643337 1 0.1792 0.866 0.932 0 0 0.068
#> SRR1643338 1 0.1716 0.867 0.936 0 0 0.064
#> SRR1643339 1 0.1867 0.865 0.928 0 0 0.072
#> SRR1643340 1 0.2011 0.862 0.920 0 0 0.080
#> SRR1643341 1 0.1716 0.867 0.936 0 0 0.064
#> SRR1643342 1 0.1792 0.866 0.932 0 0 0.068
#> SRR1643343 1 0.4866 0.500 0.596 0 0 0.404
#> SRR1643344 1 0.4866 0.500 0.596 0 0 0.404
#> SRR1643345 1 0.4866 0.500 0.596 0 0 0.404
#> SRR1643346 1 0.4866 0.500 0.596 0 0 0.404
#> SRR1643347 1 0.4866 0.500 0.596 0 0 0.404
#> SRR1643348 1 0.4866 0.500 0.596 0 0 0.404
#> SRR1643349 1 0.4866 0.500 0.596 0 0 0.404
#> SRR1643350 1 0.4866 0.500 0.596 0 0 0.404
#> SRR1643351 1 0.4866 0.500 0.596 0 0 0.404
#> SRR1643352 1 0.4866 0.500 0.596 0 0 0.404
#> SRR1643353 1 0.4866 0.500 0.596 0 0 0.404
#> SRR1643354 1 0.4866 0.500 0.596 0 0 0.404
#> SRR1643355 1 0.4866 0.500 0.596 0 0 0.404
#> SRR1643356 1 0.4866 0.500 0.596 0 0 0.404
#> SRR1643357 1 0.4866 0.500 0.596 0 0 0.404
#> SRR1643358 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643359 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643360 4 0.0188 0.981 0.004 0 0 0.996
#> SRR1643361 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643362 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643363 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643364 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643365 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643366 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643367 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643368 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643369 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643370 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643371 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643372 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643373 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643374 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643375 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643376 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643377 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643378 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643379 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643380 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643381 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643382 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643383 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643384 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643385 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643386 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643387 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643388 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643389 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643390 1 0.0921 0.865 0.972 0 0 0.028
#> SRR1643391 1 0.0921 0.865 0.972 0 0 0.028
#> SRR1643392 1 0.0921 0.865 0.972 0 0 0.028
#> SRR1643393 1 0.0921 0.865 0.972 0 0 0.028
#> SRR1643394 1 0.0921 0.865 0.972 0 0 0.028
#> SRR1643395 1 0.0921 0.865 0.972 0 0 0.028
#> SRR1643396 1 0.0921 0.865 0.972 0 0 0.028
#> SRR1643397 1 0.0921 0.865 0.972 0 0 0.028
#> SRR1643398 1 0.0921 0.865 0.972 0 0 0.028
#> SRR1643399 1 0.0921 0.865 0.972 0 0 0.028
#> SRR1643400 1 0.0921 0.865 0.972 0 0 0.028
#> SRR1643401 1 0.0921 0.865 0.972 0 0 0.028
#> SRR1643402 1 0.0921 0.865 0.972 0 0 0.028
#> SRR1643403 1 0.0921 0.865 0.972 0 0 0.028
#> SRR1643404 1 0.0921 0.865 0.972 0 0 0.028
#> SRR1643405 1 0.2011 0.862 0.920 0 0 0.080
#> SRR1643406 1 0.2011 0.862 0.920 0 0 0.080
#> SRR1643407 1 0.2011 0.862 0.920 0 0 0.080
#> SRR1643408 1 0.2011 0.862 0.920 0 0 0.080
#> SRR1643409 1 0.2011 0.862 0.920 0 0 0.080
#> SRR1643410 1 0.2011 0.862 0.920 0 0 0.080
#> SRR1643411 1 0.2011 0.862 0.920 0 0 0.080
#> SRR1643412 1 0.2011 0.862 0.920 0 0 0.080
#> SRR1643413 1 0.2011 0.862 0.920 0 0 0.080
#> SRR1643414 1 0.2011 0.862 0.920 0 0 0.080
#> SRR1643415 1 0.2011 0.862 0.920 0 0 0.080
#> SRR1643416 1 0.2011 0.862 0.920 0 0 0.080
#> SRR1643417 1 0.2011 0.862 0.920 0 0 0.080
#> SRR1643418 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643419 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643420 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643421 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643422 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643423 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643424 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643425 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643426 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643427 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643428 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643429 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643430 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643431 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643432 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643433 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643434 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643435 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643436 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643437 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643438 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643439 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643440 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643441 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643442 4 0.0000 0.981 0.000 0 0 1.000
#> SRR1643443 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643505 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643168 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643169 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643170 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643171 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643172 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643173 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643174 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643175 1 0.4201 0.3803 0.592 0 0.000 0.000 0.408
#> SRR1643176 1 0.4219 0.3603 0.584 0 0.000 0.000 0.416
#> SRR1643177 1 0.4235 0.3382 0.576 0 0.000 0.000 0.424
#> SRR1643178 1 0.4192 0.3913 0.596 0 0.000 0.000 0.404
#> SRR1643180 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643181 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643182 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643183 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643184 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643185 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643186 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643187 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643188 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643189 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643190 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643191 1 0.0963 0.9400 0.964 0 0.000 0.000 0.036
#> SRR1643192 1 0.0963 0.9400 0.964 0 0.000 0.000 0.036
#> SRR1643193 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643194 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643195 1 0.4668 0.4925 0.624 0 0.000 0.024 0.352
#> SRR1643196 1 0.4668 0.4925 0.624 0 0.000 0.024 0.352
#> SRR1643197 1 0.0162 0.9640 0.996 0 0.000 0.000 0.004
#> SRR1643198 1 0.0000 0.9650 1.000 0 0.000 0.000 0.000
#> SRR1643199 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643200 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643201 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643202 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643203 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643204 1 0.0162 0.9648 0.996 0 0.000 0.000 0.004
#> SRR1643205 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643206 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643207 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643208 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643209 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643210 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643211 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643212 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643213 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643214 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643215 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643216 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643217 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643218 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643219 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643220 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643221 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643222 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643223 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643224 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643225 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643226 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643227 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643228 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643229 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643230 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643231 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643232 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643233 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643234 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643235 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643236 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643237 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643238 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643239 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643240 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643241 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643242 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643243 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643245 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643246 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643247 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643248 3 0.0000 0.9995 0.000 0 1.000 0.000 0.000
#> SRR1643249 3 0.0703 0.9778 0.000 0 0.976 0.000 0.024
#> SRR1643250 4 0.3796 0.4840 0.000 0 0.000 0.700 0.300
#> SRR1643251 4 0.3730 0.5115 0.000 0 0.000 0.712 0.288
#> SRR1643252 4 0.3636 0.5379 0.000 0 0.000 0.728 0.272
#> SRR1643253 4 0.3816 0.4778 0.000 0 0.000 0.696 0.304
#> SRR1643254 4 0.3857 0.4621 0.000 0 0.000 0.688 0.312
#> SRR1643255 4 0.3684 0.5227 0.000 0 0.000 0.720 0.280
#> SRR1643256 4 0.3796 0.4880 0.000 0 0.000 0.700 0.300
#> SRR1643257 4 0.3684 0.5260 0.000 0 0.000 0.720 0.280
#> SRR1643258 4 0.3837 0.4754 0.000 0 0.000 0.692 0.308
#> SRR1643259 4 0.3752 0.5039 0.000 0 0.000 0.708 0.292
#> SRR1643260 4 0.3816 0.4779 0.000 0 0.000 0.696 0.304
#> SRR1643261 4 0.3752 0.5040 0.000 0 0.000 0.708 0.292
#> SRR1643262 4 0.1671 0.8380 0.000 0 0.000 0.924 0.076
#> SRR1643263 4 0.1671 0.8380 0.000 0 0.000 0.924 0.076
#> SRR1643264 4 0.1671 0.8380 0.000 0 0.000 0.924 0.076
#> SRR1643266 4 0.1671 0.8380 0.000 0 0.000 0.924 0.076
#> SRR1643267 4 0.1671 0.8380 0.000 0 0.000 0.924 0.076
#> SRR1643268 4 0.1671 0.8380 0.000 0 0.000 0.924 0.076
#> SRR1643269 4 0.1671 0.8380 0.000 0 0.000 0.924 0.076
#> SRR1643270 4 0.1671 0.8380 0.000 0 0.000 0.924 0.076
#> SRR1643271 4 0.1671 0.8380 0.000 0 0.000 0.924 0.076
#> SRR1643272 4 0.1671 0.8380 0.000 0 0.000 0.924 0.076
#> SRR1643273 5 0.4074 0.5678 0.000 0 0.000 0.364 0.636
#> SRR1643274 5 0.4182 0.5054 0.000 0 0.000 0.400 0.600
#> SRR1643275 5 0.4114 0.5545 0.000 0 0.000 0.376 0.624
#> SRR1643276 5 0.4114 0.5545 0.000 0 0.000 0.376 0.624
#> SRR1643277 5 0.4060 0.5723 0.000 0 0.000 0.360 0.640
#> SRR1643278 5 0.4088 0.5627 0.000 0 0.000 0.368 0.632
#> SRR1643279 5 0.4126 0.5459 0.000 0 0.000 0.380 0.620
#> SRR1643280 5 0.4138 0.5413 0.000 0 0.000 0.384 0.616
#> SRR1643281 5 0.4138 0.5381 0.000 0 0.000 0.384 0.616
#> SRR1643282 5 0.4114 0.5517 0.000 0 0.000 0.376 0.624
#> SRR1643283 5 0.4101 0.5574 0.000 0 0.000 0.372 0.628
#> SRR1643284 5 0.4161 0.5222 0.000 0 0.000 0.392 0.608
#> SRR1643285 5 0.4126 0.5449 0.000 0 0.000 0.380 0.620
#> SRR1643286 5 0.4201 0.4886 0.000 0 0.000 0.408 0.592
#> SRR1643287 4 0.0290 0.8865 0.000 0 0.000 0.992 0.008
#> SRR1643288 4 0.0290 0.8865 0.000 0 0.000 0.992 0.008
#> SRR1643289 4 0.0290 0.8865 0.000 0 0.000 0.992 0.008
#> SRR1643290 4 0.0290 0.8865 0.000 0 0.000 0.992 0.008
#> SRR1643291 4 0.0290 0.8865 0.000 0 0.000 0.992 0.008
#> SRR1643292 4 0.0290 0.8865 0.000 0 0.000 0.992 0.008
#> SRR1643293 4 0.0290 0.8865 0.000 0 0.000 0.992 0.008
#> SRR1643294 4 0.0290 0.8865 0.000 0 0.000 0.992 0.008
#> SRR1643295 4 0.0290 0.8865 0.000 0 0.000 0.992 0.008
#> SRR1643296 4 0.0290 0.8865 0.000 0 0.000 0.992 0.008
#> SRR1643297 4 0.0290 0.8865 0.000 0 0.000 0.992 0.008
#> SRR1643298 4 0.0290 0.8865 0.000 0 0.000 0.992 0.008
#> SRR1643299 4 0.0290 0.8865 0.000 0 0.000 0.992 0.008
#> SRR1643300 4 0.0290 0.8865 0.000 0 0.000 0.992 0.008
#> SRR1643301 4 0.4287 -0.0859 0.000 0 0.000 0.540 0.460
#> SRR1643302 4 0.4300 -0.1456 0.000 0 0.000 0.524 0.476
#> SRR1643303 5 0.4307 0.2326 0.000 0 0.000 0.496 0.504
#> SRR1643304 4 0.4300 -0.1454 0.000 0 0.000 0.524 0.476
#> SRR1643305 5 0.4297 0.3136 0.000 0 0.000 0.472 0.528
#> SRR1643306 5 0.4305 0.2626 0.000 0 0.000 0.488 0.512
#> SRR1643307 4 0.4300 -0.1452 0.000 0 0.000 0.524 0.476
#> SRR1643308 5 0.4302 0.2891 0.000 0 0.000 0.480 0.520
#> SRR1643309 4 0.4171 0.1838 0.000 0 0.000 0.604 0.396
#> SRR1643310 4 0.4307 -0.2409 0.000 0 0.000 0.500 0.500
#> SRR1643311 4 0.4297 -0.1348 0.000 0 0.000 0.528 0.472
#> SRR1643312 5 0.4302 0.2900 0.000 0 0.000 0.480 0.520
#> SRR1643313 4 0.4291 -0.0954 0.000 0 0.000 0.536 0.464
#> SRR1643314 5 0.1341 0.7784 0.000 0 0.000 0.056 0.944
#> SRR1643315 5 0.1341 0.7784 0.000 0 0.000 0.056 0.944
#> SRR1643316 5 0.1544 0.7786 0.000 0 0.000 0.068 0.932
#> SRR1643317 5 0.1410 0.7790 0.000 0 0.000 0.060 0.940
#> SRR1643318 5 0.1410 0.7790 0.000 0 0.000 0.060 0.940
#> SRR1643319 5 0.4622 0.6315 0.040 0 0.000 0.276 0.684
#> SRR1643320 5 0.2561 0.7453 0.000 0 0.000 0.144 0.856
#> SRR1643321 5 0.1544 0.7787 0.000 0 0.000 0.068 0.932
#> SRR1643322 5 0.1410 0.7790 0.000 0 0.000 0.060 0.940
#> SRR1643323 5 0.1341 0.7784 0.000 0 0.000 0.056 0.944
#> SRR1643324 5 0.1341 0.7784 0.000 0 0.000 0.056 0.944
#> SRR1643325 5 0.1478 0.7795 0.000 0 0.000 0.064 0.936
#> SRR1643326 5 0.1478 0.7792 0.000 0 0.000 0.064 0.936
#> SRR1643327 5 0.1478 0.7791 0.000 0 0.000 0.064 0.936
#> SRR1643328 1 0.0162 0.9644 0.996 0 0.000 0.000 0.004
#> SRR1643329 1 0.0162 0.9644 0.996 0 0.000 0.000 0.004
#> SRR1643330 1 0.0162 0.9644 0.996 0 0.000 0.000 0.004
#> SRR1643331 1 0.0162 0.9644 0.996 0 0.000 0.000 0.004
#> SRR1643332 1 0.0162 0.9644 0.996 0 0.000 0.000 0.004
#> SRR1643333 1 0.0162 0.9644 0.996 0 0.000 0.000 0.004
#> SRR1643334 1 0.0000 0.9650 1.000 0 0.000 0.000 0.000
#> SRR1643335 1 0.0162 0.9644 0.996 0 0.000 0.000 0.004
#> SRR1643336 1 0.0162 0.9644 0.996 0 0.000 0.000 0.004
#> SRR1643337 1 0.0162 0.9644 0.996 0 0.000 0.000 0.004
#> SRR1643338 1 0.0162 0.9644 0.996 0 0.000 0.000 0.004
#> SRR1643339 1 0.0162 0.9644 0.996 0 0.000 0.000 0.004
#> SRR1643340 1 0.0162 0.9644 0.996 0 0.000 0.000 0.004
#> SRR1643341 1 0.0162 0.9644 0.996 0 0.000 0.000 0.004
#> SRR1643342 1 0.0162 0.9644 0.996 0 0.000 0.000 0.004
#> SRR1643343 5 0.0162 0.7577 0.004 0 0.000 0.000 0.996
#> SRR1643344 5 0.0162 0.7577 0.004 0 0.000 0.000 0.996
#> SRR1643345 5 0.0162 0.7577 0.004 0 0.000 0.000 0.996
#> SRR1643346 5 0.0162 0.7577 0.004 0 0.000 0.000 0.996
#> SRR1643347 5 0.0162 0.7577 0.004 0 0.000 0.000 0.996
#> SRR1643348 5 0.0162 0.7577 0.004 0 0.000 0.000 0.996
#> SRR1643349 5 0.0162 0.7577 0.004 0 0.000 0.000 0.996
#> SRR1643350 5 0.0162 0.7577 0.004 0 0.000 0.000 0.996
#> SRR1643351 5 0.0162 0.7577 0.004 0 0.000 0.000 0.996
#> SRR1643352 5 0.0162 0.7577 0.004 0 0.000 0.000 0.996
#> SRR1643353 5 0.0162 0.7577 0.004 0 0.000 0.000 0.996
#> SRR1643354 5 0.0162 0.7577 0.004 0 0.000 0.000 0.996
#> SRR1643355 5 0.0162 0.7577 0.004 0 0.000 0.000 0.996
#> SRR1643356 5 0.0162 0.7577 0.004 0 0.000 0.000 0.996
#> SRR1643357 5 0.0162 0.7577 0.004 0 0.000 0.000 0.996
#> SRR1643358 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643359 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643360 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643361 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643362 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643363 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643364 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643365 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643366 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643367 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643368 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643369 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643370 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643371 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643372 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643373 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643374 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643375 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643376 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643377 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643378 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643379 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643380 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643381 4 0.0290 0.8876 0.000 0 0.000 0.992 0.008
#> SRR1643382 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643383 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643384 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643385 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643386 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643387 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643388 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643389 4 0.0162 0.8894 0.000 0 0.000 0.996 0.004
#> SRR1643390 1 0.0000 0.9650 1.000 0 0.000 0.000 0.000
#> SRR1643391 1 0.0000 0.9650 1.000 0 0.000 0.000 0.000
#> SRR1643392 1 0.0000 0.9650 1.000 0 0.000 0.000 0.000
#> SRR1643393 1 0.0000 0.9650 1.000 0 0.000 0.000 0.000
#> SRR1643394 1 0.0000 0.9650 1.000 0 0.000 0.000 0.000
#> SRR1643395 1 0.0000 0.9650 1.000 0 0.000 0.000 0.000
#> SRR1643396 1 0.0000 0.9650 1.000 0 0.000 0.000 0.000
#> SRR1643397 1 0.0000 0.9650 1.000 0 0.000 0.000 0.000
#> SRR1643398 1 0.0000 0.9650 1.000 0 0.000 0.000 0.000
#> SRR1643399 1 0.0000 0.9650 1.000 0 0.000 0.000 0.000
#> SRR1643400 1 0.0000 0.9650 1.000 0 0.000 0.000 0.000
#> SRR1643401 1 0.0000 0.9650 1.000 0 0.000 0.000 0.000
#> SRR1643402 1 0.0000 0.9650 1.000 0 0.000 0.000 0.000
#> SRR1643403 1 0.0000 0.9650 1.000 0 0.000 0.000 0.000
#> SRR1643404 1 0.0000 0.9650 1.000 0 0.000 0.000 0.000
#> SRR1643405 1 0.0324 0.9624 0.992 0 0.000 0.004 0.004
#> SRR1643406 1 0.0324 0.9624 0.992 0 0.000 0.004 0.004
#> SRR1643407 1 0.0324 0.9624 0.992 0 0.000 0.004 0.004
#> SRR1643408 1 0.0324 0.9624 0.992 0 0.000 0.004 0.004
#> SRR1643409 1 0.0324 0.9624 0.992 0 0.000 0.004 0.004
#> SRR1643410 1 0.0324 0.9624 0.992 0 0.000 0.004 0.004
#> SRR1643411 1 0.0324 0.9624 0.992 0 0.000 0.004 0.004
#> SRR1643412 1 0.0324 0.9624 0.992 0 0.000 0.004 0.004
#> SRR1643413 1 0.0324 0.9624 0.992 0 0.000 0.004 0.004
#> SRR1643414 1 0.0324 0.9624 0.992 0 0.000 0.004 0.004
#> SRR1643415 1 0.0324 0.9624 0.992 0 0.000 0.004 0.004
#> SRR1643416 1 0.0324 0.9624 0.992 0 0.000 0.004 0.004
#> SRR1643417 1 0.0324 0.9624 0.992 0 0.000 0.004 0.004
#> SRR1643418 4 0.0162 0.8877 0.000 0 0.000 0.996 0.004
#> SRR1643419 4 0.0162 0.8877 0.000 0 0.000 0.996 0.004
#> SRR1643420 4 0.0162 0.8877 0.000 0 0.000 0.996 0.004
#> SRR1643421 4 0.0162 0.8877 0.000 0 0.000 0.996 0.004
#> SRR1643422 4 0.0162 0.8877 0.000 0 0.000 0.996 0.004
#> SRR1643423 4 0.0162 0.8877 0.000 0 0.000 0.996 0.004
#> SRR1643424 4 0.0162 0.8877 0.000 0 0.000 0.996 0.004
#> SRR1643425 4 0.0162 0.8877 0.000 0 0.000 0.996 0.004
#> SRR1643426 4 0.0162 0.8877 0.000 0 0.000 0.996 0.004
#> SRR1643427 4 0.0162 0.8877 0.000 0 0.000 0.996 0.004
#> SRR1643428 4 0.0162 0.8877 0.000 0 0.000 0.996 0.004
#> SRR1643429 4 0.0162 0.8877 0.000 0 0.000 0.996 0.004
#> SRR1643430 4 0.0000 0.8887 0.000 0 0.000 1.000 0.000
#> SRR1643431 4 0.0000 0.8887 0.000 0 0.000 1.000 0.000
#> SRR1643432 4 0.0000 0.8887 0.000 0 0.000 1.000 0.000
#> SRR1643433 4 0.0000 0.8887 0.000 0 0.000 1.000 0.000
#> SRR1643434 4 0.0000 0.8887 0.000 0 0.000 1.000 0.000
#> SRR1643435 4 0.0000 0.8887 0.000 0 0.000 1.000 0.000
#> SRR1643436 4 0.0000 0.8887 0.000 0 0.000 1.000 0.000
#> SRR1643437 4 0.0000 0.8887 0.000 0 0.000 1.000 0.000
#> SRR1643438 4 0.0000 0.8887 0.000 0 0.000 1.000 0.000
#> SRR1643439 4 0.0000 0.8887 0.000 0 0.000 1.000 0.000
#> SRR1643440 4 0.0000 0.8887 0.000 0 0.000 1.000 0.000
#> SRR1643441 4 0.0000 0.8887 0.000 0 0.000 1.000 0.000
#> SRR1643442 4 0.0000 0.8887 0.000 0 0.000 1.000 0.000
#> SRR1643443 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643444 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643445 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643446 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643447 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643448 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643449 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643450 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643451 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643452 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643453 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643454 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643455 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643456 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643457 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643458 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643459 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643460 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643461 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643462 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643463 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643464 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643466 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643467 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643468 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643469 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643470 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643471 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643472 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643473 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643474 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643475 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643477 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643478 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643479 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643480 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643481 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643482 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643483 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643484 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643485 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643486 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643487 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643488 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643489 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643490 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643491 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643492 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643493 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643494 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643495 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643496 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643497 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643498 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643499 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643500 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643501 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643502 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643503 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643504 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643505 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643506 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643507 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643508 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643509 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643510 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643511 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643512 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643513 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643531 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643532 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643533 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643534 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643535 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643536 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643537 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643538 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643539 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643540 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643541 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643542 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643543 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643544 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643514 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643515 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643516 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643517 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643518 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643519 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643520 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643521 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643522 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643523 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643524 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643525 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643526 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643527 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643528 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643529 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643530 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643545 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643546 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643547 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643548 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643549 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643550 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643551 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643552 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643553 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643554 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643555 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643556 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643558 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643559 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643560 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643561 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643562 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643563 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643564 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643565 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643566 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643567 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643568 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643569 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643570 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643571 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
#> SRR1643572 2 0.0000 1.0000 0.000 1 0.000 0.000 0.000
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643168 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643169 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643170 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643171 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643172 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643173 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643174 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643175 6 0.3866 0.0823 0.484 0.000 0.00 0.000 0.000 0.516
#> SRR1643176 6 0.3857 0.1392 0.468 0.000 0.00 0.000 0.000 0.532
#> SRR1643177 6 0.3862 0.1123 0.476 0.000 0.00 0.000 0.000 0.524
#> SRR1643178 1 0.3868 -0.0302 0.504 0.000 0.00 0.000 0.000 0.496
#> SRR1643180 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643181 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643182 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643183 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643184 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643185 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643186 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643187 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643188 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643189 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643190 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643191 1 0.1745 0.9010 0.920 0.000 0.00 0.000 0.012 0.068
#> SRR1643192 1 0.1745 0.9010 0.920 0.000 0.00 0.000 0.012 0.068
#> SRR1643193 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643194 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643195 1 0.4609 0.4556 0.608 0.000 0.00 0.024 0.016 0.352
#> SRR1643196 1 0.4609 0.4556 0.608 0.000 0.00 0.024 0.016 0.352
#> SRR1643197 1 0.0260 0.9514 0.992 0.000 0.00 0.000 0.000 0.008
#> SRR1643198 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643199 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643200 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643201 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643202 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643203 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643204 1 0.1588 0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643205 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643206 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643207 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643208 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643209 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643210 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643211 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643212 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643213 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643214 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643215 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643216 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643217 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643218 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643219 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643220 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643221 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643222 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643223 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643224 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643225 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643226 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643227 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643228 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643229 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643230 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643231 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643232 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643233 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643234 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643235 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643236 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643237 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643238 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643239 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643240 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643241 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643242 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643243 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643245 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643246 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643247 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643248 3 0.0000 0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643249 3 0.1116 0.9637 0.004 0.000 0.96 0.000 0.008 0.028
#> SRR1643250 4 0.3869 -0.0154 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643251 4 0.3869 -0.0154 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643252 6 0.3869 -0.0161 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643253 6 0.3869 -0.0161 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643254 4 0.3869 -0.0154 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643255 6 0.3869 -0.0161 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643256 6 0.3869 -0.0161 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643257 4 0.3869 -0.0154 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643258 4 0.3869 -0.0154 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643259 4 0.3869 -0.0154 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643260 4 0.3869 -0.0154 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643261 6 0.3869 -0.0161 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643262 4 0.1267 0.8392 0.000 0.000 0.00 0.940 0.000 0.060
#> SRR1643263 4 0.1267 0.8392 0.000 0.000 0.00 0.940 0.000 0.060
#> SRR1643264 4 0.1267 0.8392 0.000 0.000 0.00 0.940 0.000 0.060
#> SRR1643266 4 0.1267 0.8392 0.000 0.000 0.00 0.940 0.000 0.060
#> SRR1643267 4 0.1267 0.8392 0.000 0.000 0.00 0.940 0.000 0.060
#> SRR1643268 4 0.1501 0.8281 0.000 0.000 0.00 0.924 0.000 0.076
#> SRR1643269 4 0.1387 0.8338 0.000 0.000 0.00 0.932 0.000 0.068
#> SRR1643270 4 0.1327 0.8375 0.000 0.000 0.00 0.936 0.000 0.064
#> SRR1643271 4 0.1267 0.8392 0.000 0.000 0.00 0.940 0.000 0.060
#> SRR1643272 4 0.1327 0.8375 0.000 0.000 0.00 0.936 0.000 0.064
#> SRR1643273 6 0.1204 0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643274 6 0.1267 0.8930 0.000 0.000 0.00 0.060 0.000 0.940
#> SRR1643275 6 0.1267 0.8930 0.000 0.000 0.00 0.060 0.000 0.940
#> SRR1643276 6 0.1204 0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643277 6 0.1204 0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643278 6 0.1204 0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643279 6 0.1204 0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643280 6 0.1204 0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643281 6 0.1204 0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643282 6 0.1204 0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643283 6 0.1204 0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643284 6 0.1204 0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643285 6 0.1204 0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643286 6 0.1267 0.8925 0.000 0.000 0.00 0.060 0.000 0.940
#> SRR1643287 4 0.2135 0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643288 4 0.2135 0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643289 4 0.2135 0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643290 4 0.2135 0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643291 4 0.2135 0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643292 4 0.2135 0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643293 4 0.2135 0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643294 4 0.2135 0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643295 4 0.2135 0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643296 4 0.2135 0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643297 4 0.2135 0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643298 4 0.2135 0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643299 4 0.2135 0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643300 4 0.2135 0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643301 6 0.1501 0.8848 0.000 0.000 0.00 0.076 0.000 0.924
#> SRR1643302 6 0.1501 0.8848 0.000 0.000 0.00 0.076 0.000 0.924
#> SRR1643303 6 0.1444 0.8878 0.000 0.000 0.00 0.072 0.000 0.928
#> SRR1643304 6 0.1501 0.8848 0.000 0.000 0.00 0.076 0.000 0.924
#> SRR1643305 6 0.1387 0.8897 0.000 0.000 0.00 0.068 0.000 0.932
#> SRR1643306 6 0.1444 0.8878 0.000 0.000 0.00 0.072 0.000 0.928
#> SRR1643307 6 0.1501 0.8848 0.000 0.000 0.00 0.076 0.000 0.924
#> SRR1643308 6 0.1444 0.8878 0.000 0.000 0.00 0.072 0.000 0.928
#> SRR1643309 6 0.1556 0.8810 0.000 0.000 0.00 0.080 0.000 0.920
#> SRR1643310 6 0.1444 0.8878 0.000 0.000 0.00 0.072 0.000 0.928
#> SRR1643311 6 0.1501 0.8848 0.000 0.000 0.00 0.076 0.000 0.924
#> SRR1643312 6 0.1444 0.8878 0.000 0.000 0.00 0.072 0.000 0.928
#> SRR1643313 6 0.1501 0.8848 0.000 0.000 0.00 0.076 0.000 0.924
#> SRR1643314 6 0.0777 0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643315 6 0.0777 0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643316 6 0.0777 0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643317 6 0.0777 0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643318 6 0.0777 0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643319 6 0.1713 0.8831 0.028 0.000 0.00 0.044 0.000 0.928
#> SRR1643320 6 0.0777 0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643321 6 0.0858 0.8936 0.004 0.000 0.00 0.028 0.000 0.968
#> SRR1643322 6 0.0777 0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643323 6 0.0777 0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643324 6 0.0777 0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643325 6 0.0777 0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643326 6 0.1152 0.8945 0.004 0.000 0.00 0.044 0.000 0.952
#> SRR1643327 6 0.0777 0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643328 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643329 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643330 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643331 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643332 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643333 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643334 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643335 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643336 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643337 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643338 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643339 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643340 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643341 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643342 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643343 6 0.0000 0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643344 6 0.0000 0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643345 6 0.0000 0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643346 6 0.0000 0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643347 6 0.0000 0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643348 6 0.0000 0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643349 6 0.0000 0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643350 6 0.0000 0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643351 6 0.0000 0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643352 6 0.0000 0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643353 6 0.0000 0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643354 6 0.0000 0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643355 6 0.0000 0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643356 6 0.0000 0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643357 6 0.0000 0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643358 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643359 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643360 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643361 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643362 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643363 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643364 4 0.1327 0.8378 0.000 0.000 0.00 0.936 0.000 0.064
#> SRR1643365 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643366 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643367 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643368 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643369 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643370 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643371 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643372 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643373 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643374 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643375 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643376 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643377 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643378 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643379 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643380 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643381 4 0.3244 0.6098 0.000 0.000 0.00 0.732 0.000 0.268
#> SRR1643382 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643383 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643384 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643385 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643386 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643387 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643388 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643389 4 0.0146 0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643390 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643391 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643392 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643393 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643394 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643395 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643396 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643397 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643398 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643399 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643400 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643401 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643402 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643403 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643404 1 0.0146 0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643405 1 0.0363 0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643406 1 0.0363 0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643407 1 0.0363 0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643408 1 0.0363 0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643409 1 0.0260 0.9514 0.992 0.000 0.00 0.000 0.000 0.008
#> SRR1643410 1 0.0260 0.9514 0.992 0.000 0.00 0.000 0.000 0.008
#> SRR1643411 1 0.0363 0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643412 1 0.0363 0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643413 1 0.0363 0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643414 1 0.0363 0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643415 1 0.0363 0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643416 1 0.0363 0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643417 1 0.0363 0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643418 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643419 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643420 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643421 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643422 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643423 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643424 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643425 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643426 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643427 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643428 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643429 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643430 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643431 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643432 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643433 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643434 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643435 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643436 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643437 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643438 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643439 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643440 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643441 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643442 5 0.2092 1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643443 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643444 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643445 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643446 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643447 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643448 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643449 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643450 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643451 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643452 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643453 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643454 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643455 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643456 2 0.0363 0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643457 2 0.0363 0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643458 2 0.0363 0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643459 2 0.0363 0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643460 2 0.0363 0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643461 2 0.0363 0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643462 2 0.0363 0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643463 2 0.0363 0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643464 2 0.0363 0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643466 2 0.0363 0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643467 2 0.0363 0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643468 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643469 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643470 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643471 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643472 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643473 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643474 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643475 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643477 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643478 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643479 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643480 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643481 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643482 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643483 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643484 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643485 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643486 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643487 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643488 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643489 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643490 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643491 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643492 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643493 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643494 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643495 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643496 2 0.0713 0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643497 2 0.0000 0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643498 2 0.0000 0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643499 2 0.0000 0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643500 2 0.0000 0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643501 2 0.0000 0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643502 2 0.0000 0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643503 2 0.0000 0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643504 2 0.0000 0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643505 2 0.0000 0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643506 2 0.0000 0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643507 2 0.0000 0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643508 2 0.0000 0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643509 2 0.0000 0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643510 2 0.0000 0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643511 2 0.0000 0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643512 2 0.0000 0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643513 2 0.0000 0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643531 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643532 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643533 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643534 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643535 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643536 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643537 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643538 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643539 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643540 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643541 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643542 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643543 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643544 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643514 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643515 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643516 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643517 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643518 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643519 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643520 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643521 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643522 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643523 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643524 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643525 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643526 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643527 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643528 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643529 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643530 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643545 2 0.0146 0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643546 2 0.0146 0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643547 2 0.0146 0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643548 2 0.0146 0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643549 2 0.0146 0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643550 2 0.0000 0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643551 2 0.0146 0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643552 2 0.0146 0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643553 2 0.0146 0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643554 2 0.0146 0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643555 2 0.0146 0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643556 2 0.0146 0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643558 2 0.0146 0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643559 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643560 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643561 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643562 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643563 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643564 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643565 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643566 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643567 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643568 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643569 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643570 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643571 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643572 2 0.0632 0.9830 0.000 0.976 0.00 0.000 0.024 0.000
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["SD", "NMF"]
# you can also extract it by
# res = res_list["SD:NMF"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'SD' method.
#> Subgroups are detected by 'NMF' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 3.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.4350 0.566 0.566
#> 3 3 1.000 0.999 0.999 0.2913 0.874 0.777
#> 4 4 0.828 0.911 0.911 0.2204 0.842 0.639
#> 5 5 0.817 0.882 0.904 0.0698 0.978 0.924
#> 6 6 0.845 0.723 0.814 0.0556 0.982 0.936
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 3
#> attr(,"optional")
#> [1] 2
There is also optional best \(k\) = 2 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.0000 0.998 1.000 0 0.000
#> SRR1643168 1 0.0000 0.998 1.000 0 0.000
#> SRR1643169 1 0.0000 0.998 1.000 0 0.000
#> SRR1643170 1 0.0000 0.998 1.000 0 0.000
#> SRR1643171 1 0.0747 0.986 0.984 0 0.016
#> SRR1643172 1 0.0747 0.986 0.984 0 0.016
#> SRR1643173 1 0.0747 0.986 0.984 0 0.016
#> SRR1643174 1 0.0747 0.986 0.984 0 0.016
#> SRR1643175 1 0.0000 0.998 1.000 0 0.000
#> SRR1643176 1 0.0000 0.998 1.000 0 0.000
#> SRR1643177 1 0.0000 0.998 1.000 0 0.000
#> SRR1643178 1 0.0000 0.998 1.000 0 0.000
#> SRR1643180 1 0.0424 0.993 0.992 0 0.008
#> SRR1643181 1 0.0424 0.993 0.992 0 0.008
#> SRR1643182 1 0.0424 0.993 0.992 0 0.008
#> SRR1643183 1 0.0237 0.996 0.996 0 0.004
#> SRR1643184 1 0.0237 0.996 0.996 0 0.004
#> SRR1643185 1 0.0237 0.996 0.996 0 0.004
#> SRR1643186 1 0.0237 0.996 0.996 0 0.004
#> SRR1643187 1 0.0000 0.998 1.000 0 0.000
#> SRR1643188 1 0.0000 0.998 1.000 0 0.000
#> SRR1643189 1 0.0000 0.998 1.000 0 0.000
#> SRR1643190 1 0.0000 0.998 1.000 0 0.000
#> SRR1643191 1 0.1031 0.978 0.976 0 0.024
#> SRR1643192 1 0.1031 0.978 0.976 0 0.024
#> SRR1643193 1 0.0000 0.998 1.000 0 0.000
#> SRR1643194 1 0.0000 0.998 1.000 0 0.000
#> SRR1643195 1 0.0000 0.998 1.000 0 0.000
#> SRR1643196 1 0.0000 0.998 1.000 0 0.000
#> SRR1643197 1 0.0237 0.996 0.996 0 0.004
#> SRR1643198 1 0.0237 0.996 0.996 0 0.004
#> SRR1643199 1 0.0000 0.998 1.000 0 0.000
#> SRR1643200 1 0.0000 0.998 1.000 0 0.000
#> SRR1643201 1 0.0000 0.998 1.000 0 0.000
#> SRR1643202 1 0.0000 0.998 1.000 0 0.000
#> SRR1643203 1 0.0000 0.998 1.000 0 0.000
#> SRR1643204 1 0.0000 0.998 1.000 0 0.000
#> SRR1643205 3 0.0000 1.000 0.000 0 1.000
#> SRR1643206 3 0.0000 1.000 0.000 0 1.000
#> SRR1643207 3 0.0000 1.000 0.000 0 1.000
#> SRR1643208 3 0.0000 1.000 0.000 0 1.000
#> SRR1643209 3 0.0000 1.000 0.000 0 1.000
#> SRR1643210 3 0.0000 1.000 0.000 0 1.000
#> SRR1643211 3 0.0000 1.000 0.000 0 1.000
#> SRR1643212 3 0.0000 1.000 0.000 0 1.000
#> SRR1643213 3 0.0000 1.000 0.000 0 1.000
#> SRR1643214 3 0.0000 1.000 0.000 0 1.000
#> SRR1643215 3 0.0000 1.000 0.000 0 1.000
#> SRR1643216 3 0.0000 1.000 0.000 0 1.000
#> SRR1643217 3 0.0000 1.000 0.000 0 1.000
#> SRR1643218 3 0.0000 1.000 0.000 0 1.000
#> SRR1643219 3 0.0000 1.000 0.000 0 1.000
#> SRR1643220 3 0.0000 1.000 0.000 0 1.000
#> SRR1643221 3 0.0000 1.000 0.000 0 1.000
#> SRR1643222 3 0.0000 1.000 0.000 0 1.000
#> SRR1643223 3 0.0000 1.000 0.000 0 1.000
#> SRR1643224 3 0.0000 1.000 0.000 0 1.000
#> SRR1643225 3 0.0000 1.000 0.000 0 1.000
#> SRR1643226 3 0.0000 1.000 0.000 0 1.000
#> SRR1643227 3 0.0000 1.000 0.000 0 1.000
#> SRR1643228 3 0.0000 1.000 0.000 0 1.000
#> SRR1643229 3 0.0000 1.000 0.000 0 1.000
#> SRR1643230 3 0.0000 1.000 0.000 0 1.000
#> SRR1643231 3 0.0000 1.000 0.000 0 1.000
#> SRR1643232 3 0.0000 1.000 0.000 0 1.000
#> SRR1643233 3 0.0000 1.000 0.000 0 1.000
#> SRR1643234 3 0.0000 1.000 0.000 0 1.000
#> SRR1643235 3 0.0000 1.000 0.000 0 1.000
#> SRR1643236 3 0.0000 1.000 0.000 0 1.000
#> SRR1643237 3 0.0000 1.000 0.000 0 1.000
#> SRR1643238 3 0.0000 1.000 0.000 0 1.000
#> SRR1643239 3 0.0000 1.000 0.000 0 1.000
#> SRR1643240 3 0.0000 1.000 0.000 0 1.000
#> SRR1643241 3 0.0000 1.000 0.000 0 1.000
#> SRR1643242 3 0.0000 1.000 0.000 0 1.000
#> SRR1643243 3 0.0000 1.000 0.000 0 1.000
#> SRR1643245 3 0.0000 1.000 0.000 0 1.000
#> SRR1643246 3 0.0000 1.000 0.000 0 1.000
#> SRR1643247 3 0.0000 1.000 0.000 0 1.000
#> SRR1643248 3 0.0000 1.000 0.000 0 1.000
#> SRR1643249 3 0.0000 1.000 0.000 0 1.000
#> SRR1643250 1 0.0000 0.998 1.000 0 0.000
#> SRR1643251 1 0.0000 0.998 1.000 0 0.000
#> SRR1643252 1 0.0000 0.998 1.000 0 0.000
#> SRR1643253 1 0.0000 0.998 1.000 0 0.000
#> SRR1643254 1 0.0000 0.998 1.000 0 0.000
#> SRR1643255 1 0.0000 0.998 1.000 0 0.000
#> SRR1643256 1 0.0000 0.998 1.000 0 0.000
#> SRR1643257 1 0.0000 0.998 1.000 0 0.000
#> SRR1643258 1 0.0000 0.998 1.000 0 0.000
#> SRR1643259 1 0.0000 0.998 1.000 0 0.000
#> SRR1643260 1 0.0000 0.998 1.000 0 0.000
#> SRR1643261 1 0.0000 0.998 1.000 0 0.000
#> SRR1643262 1 0.0000 0.998 1.000 0 0.000
#> SRR1643263 1 0.0000 0.998 1.000 0 0.000
#> SRR1643264 1 0.0000 0.998 1.000 0 0.000
#> SRR1643266 1 0.0000 0.998 1.000 0 0.000
#> SRR1643267 1 0.0000 0.998 1.000 0 0.000
#> SRR1643268 1 0.0000 0.998 1.000 0 0.000
#> SRR1643269 1 0.0000 0.998 1.000 0 0.000
#> SRR1643270 1 0.0000 0.998 1.000 0 0.000
#> SRR1643271 1 0.0000 0.998 1.000 0 0.000
#> SRR1643272 1 0.0000 0.998 1.000 0 0.000
#> SRR1643273 1 0.0000 0.998 1.000 0 0.000
#> SRR1643274 1 0.0000 0.998 1.000 0 0.000
#> SRR1643275 1 0.0000 0.998 1.000 0 0.000
#> SRR1643276 1 0.0000 0.998 1.000 0 0.000
#> SRR1643277 1 0.0000 0.998 1.000 0 0.000
#> SRR1643278 1 0.0000 0.998 1.000 0 0.000
#> SRR1643279 1 0.0000 0.998 1.000 0 0.000
#> SRR1643280 1 0.0000 0.998 1.000 0 0.000
#> SRR1643281 1 0.0000 0.998 1.000 0 0.000
#> SRR1643282 1 0.0000 0.998 1.000 0 0.000
#> SRR1643283 1 0.0000 0.998 1.000 0 0.000
#> SRR1643284 1 0.0000 0.998 1.000 0 0.000
#> SRR1643285 1 0.0000 0.998 1.000 0 0.000
#> SRR1643286 1 0.0000 0.998 1.000 0 0.000
#> SRR1643287 1 0.0000 0.998 1.000 0 0.000
#> SRR1643288 1 0.0000 0.998 1.000 0 0.000
#> SRR1643289 1 0.0000 0.998 1.000 0 0.000
#> SRR1643290 1 0.0000 0.998 1.000 0 0.000
#> SRR1643291 1 0.0000 0.998 1.000 0 0.000
#> SRR1643292 1 0.0000 0.998 1.000 0 0.000
#> SRR1643293 1 0.0000 0.998 1.000 0 0.000
#> SRR1643294 1 0.0000 0.998 1.000 0 0.000
#> SRR1643295 1 0.0000 0.998 1.000 0 0.000
#> SRR1643296 1 0.0000 0.998 1.000 0 0.000
#> SRR1643297 1 0.0000 0.998 1.000 0 0.000
#> SRR1643298 1 0.0000 0.998 1.000 0 0.000
#> SRR1643299 1 0.0000 0.998 1.000 0 0.000
#> SRR1643300 1 0.0000 0.998 1.000 0 0.000
#> SRR1643301 1 0.0000 0.998 1.000 0 0.000
#> SRR1643302 1 0.0000 0.998 1.000 0 0.000
#> SRR1643303 1 0.0000 0.998 1.000 0 0.000
#> SRR1643304 1 0.0000 0.998 1.000 0 0.000
#> SRR1643305 1 0.0000 0.998 1.000 0 0.000
#> SRR1643306 1 0.0000 0.998 1.000 0 0.000
#> SRR1643307 1 0.0000 0.998 1.000 0 0.000
#> SRR1643308 1 0.0000 0.998 1.000 0 0.000
#> SRR1643309 1 0.0000 0.998 1.000 0 0.000
#> SRR1643310 1 0.0000 0.998 1.000 0 0.000
#> SRR1643311 1 0.0000 0.998 1.000 0 0.000
#> SRR1643312 1 0.0000 0.998 1.000 0 0.000
#> SRR1643313 1 0.0000 0.998 1.000 0 0.000
#> SRR1643314 1 0.0000 0.998 1.000 0 0.000
#> SRR1643315 1 0.0000 0.998 1.000 0 0.000
#> SRR1643316 1 0.0000 0.998 1.000 0 0.000
#> SRR1643317 1 0.0000 0.998 1.000 0 0.000
#> SRR1643318 1 0.0000 0.998 1.000 0 0.000
#> SRR1643319 1 0.0000 0.998 1.000 0 0.000
#> SRR1643320 1 0.0000 0.998 1.000 0 0.000
#> SRR1643321 1 0.0000 0.998 1.000 0 0.000
#> SRR1643322 1 0.0000 0.998 1.000 0 0.000
#> SRR1643323 1 0.0000 0.998 1.000 0 0.000
#> SRR1643324 1 0.0000 0.998 1.000 0 0.000
#> SRR1643325 1 0.0000 0.998 1.000 0 0.000
#> SRR1643326 1 0.0000 0.998 1.000 0 0.000
#> SRR1643327 1 0.0000 0.998 1.000 0 0.000
#> SRR1643328 1 0.0424 0.993 0.992 0 0.008
#> SRR1643329 1 0.0424 0.993 0.992 0 0.008
#> SRR1643330 1 0.0424 0.993 0.992 0 0.008
#> SRR1643331 1 0.0237 0.996 0.996 0 0.004
#> SRR1643332 1 0.0424 0.993 0.992 0 0.008
#> SRR1643333 1 0.0237 0.996 0.996 0 0.004
#> SRR1643334 1 0.0237 0.996 0.996 0 0.004
#> SRR1643335 1 0.0237 0.996 0.996 0 0.004
#> SRR1643336 1 0.0237 0.996 0.996 0 0.004
#> SRR1643337 1 0.0237 0.996 0.996 0 0.004
#> SRR1643338 1 0.0237 0.996 0.996 0 0.004
#> SRR1643339 1 0.0237 0.996 0.996 0 0.004
#> SRR1643340 1 0.0237 0.996 0.996 0 0.004
#> SRR1643341 1 0.0237 0.996 0.996 0 0.004
#> SRR1643342 1 0.0424 0.993 0.992 0 0.008
#> SRR1643343 1 0.0000 0.998 1.000 0 0.000
#> SRR1643344 1 0.0000 0.998 1.000 0 0.000
#> SRR1643345 1 0.0000 0.998 1.000 0 0.000
#> SRR1643346 1 0.0000 0.998 1.000 0 0.000
#> SRR1643347 1 0.0000 0.998 1.000 0 0.000
#> SRR1643348 1 0.0000 0.998 1.000 0 0.000
#> SRR1643349 1 0.0000 0.998 1.000 0 0.000
#> SRR1643350 1 0.0000 0.998 1.000 0 0.000
#> SRR1643351 1 0.0000 0.998 1.000 0 0.000
#> SRR1643352 1 0.0000 0.998 1.000 0 0.000
#> SRR1643353 1 0.0000 0.998 1.000 0 0.000
#> SRR1643354 1 0.0000 0.998 1.000 0 0.000
#> SRR1643355 1 0.0000 0.998 1.000 0 0.000
#> SRR1643356 1 0.0000 0.998 1.000 0 0.000
#> SRR1643357 1 0.0000 0.998 1.000 0 0.000
#> SRR1643358 1 0.0000 0.998 1.000 0 0.000
#> SRR1643359 1 0.0000 0.998 1.000 0 0.000
#> SRR1643360 1 0.0000 0.998 1.000 0 0.000
#> SRR1643361 1 0.0000 0.998 1.000 0 0.000
#> SRR1643362 1 0.0000 0.998 1.000 0 0.000
#> SRR1643363 1 0.0000 0.998 1.000 0 0.000
#> SRR1643364 1 0.0000 0.998 1.000 0 0.000
#> SRR1643365 1 0.0000 0.998 1.000 0 0.000
#> SRR1643366 1 0.0000 0.998 1.000 0 0.000
#> SRR1643367 1 0.0000 0.998 1.000 0 0.000
#> SRR1643368 1 0.0000 0.998 1.000 0 0.000
#> SRR1643369 1 0.0000 0.998 1.000 0 0.000
#> SRR1643370 1 0.0000 0.998 1.000 0 0.000
#> SRR1643371 1 0.0000 0.998 1.000 0 0.000
#> SRR1643372 1 0.0000 0.998 1.000 0 0.000
#> SRR1643373 1 0.0000 0.998 1.000 0 0.000
#> SRR1643374 1 0.0000 0.998 1.000 0 0.000
#> SRR1643375 1 0.0000 0.998 1.000 0 0.000
#> SRR1643376 1 0.0000 0.998 1.000 0 0.000
#> SRR1643377 1 0.0000 0.998 1.000 0 0.000
#> SRR1643378 1 0.0000 0.998 1.000 0 0.000
#> SRR1643379 1 0.0000 0.998 1.000 0 0.000
#> SRR1643380 1 0.0000 0.998 1.000 0 0.000
#> SRR1643381 1 0.0000 0.998 1.000 0 0.000
#> SRR1643382 1 0.0000 0.998 1.000 0 0.000
#> SRR1643383 1 0.0000 0.998 1.000 0 0.000
#> SRR1643384 1 0.0000 0.998 1.000 0 0.000
#> SRR1643385 1 0.0000 0.998 1.000 0 0.000
#> SRR1643386 1 0.0000 0.998 1.000 0 0.000
#> SRR1643387 1 0.0000 0.998 1.000 0 0.000
#> SRR1643388 1 0.0000 0.998 1.000 0 0.000
#> SRR1643389 1 0.0000 0.998 1.000 0 0.000
#> SRR1643390 1 0.0237 0.996 0.996 0 0.004
#> SRR1643391 1 0.0000 0.998 1.000 0 0.000
#> SRR1643392 1 0.0237 0.996 0.996 0 0.004
#> SRR1643393 1 0.0000 0.998 1.000 0 0.000
#> SRR1643394 1 0.0237 0.996 0.996 0 0.004
#> SRR1643395 1 0.0237 0.996 0.996 0 0.004
#> SRR1643396 1 0.0237 0.996 0.996 0 0.004
#> SRR1643397 1 0.0000 0.998 1.000 0 0.000
#> SRR1643398 1 0.0000 0.998 1.000 0 0.000
#> SRR1643399 1 0.0000 0.998 1.000 0 0.000
#> SRR1643400 1 0.0237 0.996 0.996 0 0.004
#> SRR1643401 1 0.0000 0.998 1.000 0 0.000
#> SRR1643402 1 0.0000 0.998 1.000 0 0.000
#> SRR1643403 1 0.0000 0.998 1.000 0 0.000
#> SRR1643404 1 0.0000 0.998 1.000 0 0.000
#> SRR1643405 1 0.0424 0.993 0.992 0 0.008
#> SRR1643406 1 0.0424 0.993 0.992 0 0.008
#> SRR1643407 1 0.0424 0.993 0.992 0 0.008
#> SRR1643408 1 0.0424 0.993 0.992 0 0.008
#> SRR1643409 1 0.0237 0.996 0.996 0 0.004
#> SRR1643410 1 0.0237 0.996 0.996 0 0.004
#> SRR1643411 1 0.0424 0.993 0.992 0 0.008
#> SRR1643412 1 0.0424 0.993 0.992 0 0.008
#> SRR1643413 1 0.0424 0.993 0.992 0 0.008
#> SRR1643414 1 0.0237 0.996 0.996 0 0.004
#> SRR1643415 1 0.0424 0.993 0.992 0 0.008
#> SRR1643416 1 0.0424 0.993 0.992 0 0.008
#> SRR1643417 1 0.0424 0.993 0.992 0 0.008
#> SRR1643418 1 0.0000 0.998 1.000 0 0.000
#> SRR1643419 1 0.0000 0.998 1.000 0 0.000
#> SRR1643420 1 0.0000 0.998 1.000 0 0.000
#> SRR1643421 1 0.0000 0.998 1.000 0 0.000
#> SRR1643422 1 0.0000 0.998 1.000 0 0.000
#> SRR1643423 1 0.0000 0.998 1.000 0 0.000
#> SRR1643424 1 0.0000 0.998 1.000 0 0.000
#> SRR1643425 1 0.0000 0.998 1.000 0 0.000
#> SRR1643426 1 0.0000 0.998 1.000 0 0.000
#> SRR1643427 1 0.0000 0.998 1.000 0 0.000
#> SRR1643428 1 0.0000 0.998 1.000 0 0.000
#> SRR1643429 1 0.0000 0.998 1.000 0 0.000
#> SRR1643430 1 0.0000 0.998 1.000 0 0.000
#> SRR1643431 1 0.0000 0.998 1.000 0 0.000
#> SRR1643432 1 0.0000 0.998 1.000 0 0.000
#> SRR1643433 1 0.0000 0.998 1.000 0 0.000
#> SRR1643434 1 0.0000 0.998 1.000 0 0.000
#> SRR1643435 1 0.0000 0.998 1.000 0 0.000
#> SRR1643436 1 0.0000 0.998 1.000 0 0.000
#> SRR1643437 1 0.0000 0.998 1.000 0 0.000
#> SRR1643438 1 0.0000 0.998 1.000 0 0.000
#> SRR1643439 1 0.0000 0.998 1.000 0 0.000
#> SRR1643440 1 0.0000 0.998 1.000 0 0.000
#> SRR1643441 1 0.0000 0.998 1.000 0 0.000
#> SRR1643442 1 0.0000 0.998 1.000 0 0.000
#> SRR1643443 2 0.0000 1.000 0.000 1 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0.000
#> SRR1643505 2 0.0000 1.000 0.000 1 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643168 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643169 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643170 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643171 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643172 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643173 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643174 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643175 1 0.1637 0.8770 0.940 0.000 0.000 0.060
#> SRR1643176 1 0.1637 0.8770 0.940 0.000 0.000 0.060
#> SRR1643177 1 0.1716 0.8757 0.936 0.000 0.000 0.064
#> SRR1643178 1 0.1637 0.8770 0.940 0.000 0.000 0.060
#> SRR1643180 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643181 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643182 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643183 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643184 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643185 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643186 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643187 1 0.1211 0.8822 0.960 0.000 0.000 0.040
#> SRR1643188 1 0.1118 0.8831 0.964 0.000 0.000 0.036
#> SRR1643189 1 0.1118 0.8831 0.964 0.000 0.000 0.036
#> SRR1643190 1 0.1118 0.8831 0.964 0.000 0.000 0.036
#> SRR1643191 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643192 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643193 1 0.1022 0.8839 0.968 0.000 0.000 0.032
#> SRR1643194 1 0.1022 0.8839 0.968 0.000 0.000 0.032
#> SRR1643195 1 0.4072 0.6162 0.748 0.000 0.000 0.252
#> SRR1643196 1 0.4103 0.6067 0.744 0.000 0.000 0.256
#> SRR1643197 1 0.0188 0.8876 0.996 0.000 0.000 0.004
#> SRR1643198 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643199 1 0.0188 0.8876 0.996 0.000 0.000 0.004
#> SRR1643200 1 0.0188 0.8876 0.996 0.000 0.000 0.004
#> SRR1643201 1 0.1716 0.8757 0.936 0.000 0.000 0.064
#> SRR1643202 1 0.1716 0.8757 0.936 0.000 0.000 0.064
#> SRR1643203 1 0.0188 0.8876 0.996 0.000 0.000 0.004
#> SRR1643204 1 0.0188 0.8876 0.996 0.000 0.000 0.004
#> SRR1643205 3 0.0336 0.9944 0.008 0.000 0.992 0.000
#> SRR1643206 3 0.0336 0.9944 0.008 0.000 0.992 0.000
#> SRR1643207 3 0.0336 0.9944 0.008 0.000 0.992 0.000
#> SRR1643208 3 0.0336 0.9944 0.008 0.000 0.992 0.000
#> SRR1643209 3 0.0707 0.9881 0.020 0.000 0.980 0.000
#> SRR1643210 3 0.0707 0.9881 0.020 0.000 0.980 0.000
#> SRR1643211 3 0.0336 0.9944 0.008 0.000 0.992 0.000
#> SRR1643212 3 0.0336 0.9944 0.008 0.000 0.992 0.000
#> SRR1643213 3 0.0336 0.9944 0.008 0.000 0.992 0.000
#> SRR1643214 3 0.0336 0.9944 0.008 0.000 0.992 0.000
#> SRR1643215 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643216 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643217 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643218 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643219 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643220 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643221 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643222 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643223 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643224 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643225 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643226 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643227 3 0.0469 0.9926 0.012 0.000 0.988 0.000
#> SRR1643228 3 0.0469 0.9926 0.012 0.000 0.988 0.000
#> SRR1643229 3 0.0921 0.9827 0.028 0.000 0.972 0.000
#> SRR1643230 3 0.0336 0.9944 0.008 0.000 0.992 0.000
#> SRR1643231 3 0.0336 0.9944 0.008 0.000 0.992 0.000
#> SRR1643232 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643233 3 0.1211 0.9738 0.040 0.000 0.960 0.000
#> SRR1643234 3 0.1211 0.9738 0.040 0.000 0.960 0.000
#> SRR1643235 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643236 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643237 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643238 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643239 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643240 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643241 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643242 3 0.1022 0.9799 0.032 0.000 0.968 0.000
#> SRR1643243 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643245 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643246 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643247 3 0.0188 0.9948 0.004 0.000 0.996 0.000
#> SRR1643248 3 0.0592 0.9904 0.016 0.000 0.984 0.000
#> SRR1643249 3 0.1389 0.9669 0.048 0.000 0.952 0.000
#> SRR1643250 4 0.4193 0.9490 0.268 0.000 0.000 0.732
#> SRR1643251 4 0.4193 0.9490 0.268 0.000 0.000 0.732
#> SRR1643252 4 0.4193 0.9490 0.268 0.000 0.000 0.732
#> SRR1643253 4 0.4193 0.9490 0.268 0.000 0.000 0.732
#> SRR1643254 4 0.4193 0.9490 0.268 0.000 0.000 0.732
#> SRR1643255 4 0.4193 0.9490 0.268 0.000 0.000 0.732
#> SRR1643256 4 0.4193 0.9490 0.268 0.000 0.000 0.732
#> SRR1643257 4 0.4193 0.9490 0.268 0.000 0.000 0.732
#> SRR1643258 4 0.4193 0.9490 0.268 0.000 0.000 0.732
#> SRR1643259 4 0.4193 0.9490 0.268 0.000 0.000 0.732
#> SRR1643260 4 0.4193 0.9490 0.268 0.000 0.000 0.732
#> SRR1643261 4 0.4193 0.9490 0.268 0.000 0.000 0.732
#> SRR1643262 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643263 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643264 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643266 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643267 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643268 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643269 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643270 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643271 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643272 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643273 1 0.2868 0.8234 0.864 0.000 0.000 0.136
#> SRR1643274 1 0.3123 0.7974 0.844 0.000 0.000 0.156
#> SRR1643275 1 0.3024 0.8083 0.852 0.000 0.000 0.148
#> SRR1643276 1 0.3074 0.8029 0.848 0.000 0.000 0.152
#> SRR1643277 1 0.2760 0.8327 0.872 0.000 0.000 0.128
#> SRR1643278 1 0.2647 0.8412 0.880 0.000 0.000 0.120
#> SRR1643279 1 0.2814 0.8282 0.868 0.000 0.000 0.132
#> SRR1643280 1 0.3123 0.7974 0.844 0.000 0.000 0.156
#> SRR1643281 1 0.3074 0.8032 0.848 0.000 0.000 0.152
#> SRR1643282 1 0.2814 0.8282 0.868 0.000 0.000 0.132
#> SRR1643283 1 0.2589 0.8452 0.884 0.000 0.000 0.116
#> SRR1643284 1 0.3024 0.8083 0.852 0.000 0.000 0.148
#> SRR1643285 1 0.3219 0.7857 0.836 0.000 0.000 0.164
#> SRR1643286 1 0.2469 0.8524 0.892 0.000 0.000 0.108
#> SRR1643287 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643288 4 0.4103 0.9587 0.256 0.000 0.000 0.744
#> SRR1643289 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643290 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643291 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643292 4 0.4103 0.9587 0.256 0.000 0.000 0.744
#> SRR1643293 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643294 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643295 4 0.4103 0.9587 0.256 0.000 0.000 0.744
#> SRR1643296 4 0.4103 0.9587 0.256 0.000 0.000 0.744
#> SRR1643297 4 0.4103 0.9587 0.256 0.000 0.000 0.744
#> SRR1643298 4 0.4103 0.9587 0.256 0.000 0.000 0.744
#> SRR1643299 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643300 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643301 1 0.4977 -0.1784 0.540 0.000 0.000 0.460
#> SRR1643302 1 0.4730 0.2872 0.636 0.000 0.000 0.364
#> SRR1643303 1 0.4941 -0.0567 0.564 0.000 0.000 0.436
#> SRR1643304 1 0.4830 0.1677 0.608 0.000 0.000 0.392
#> SRR1643305 1 0.4746 0.2714 0.632 0.000 0.000 0.368
#> SRR1643306 1 0.4661 0.3474 0.652 0.000 0.000 0.348
#> SRR1643307 1 0.4941 -0.0583 0.564 0.000 0.000 0.436
#> SRR1643308 1 0.4679 0.3331 0.648 0.000 0.000 0.352
#> SRR1643309 1 0.4994 -0.2689 0.520 0.000 0.000 0.480
#> SRR1643310 1 0.4999 -0.3187 0.508 0.000 0.000 0.492
#> SRR1643311 1 0.4994 -0.2691 0.520 0.000 0.000 0.480
#> SRR1643312 1 0.4406 0.4983 0.700 0.000 0.000 0.300
#> SRR1643313 1 0.4948 -0.0785 0.560 0.000 0.000 0.440
#> SRR1643314 1 0.2149 0.8660 0.912 0.000 0.000 0.088
#> SRR1643315 1 0.2149 0.8660 0.912 0.000 0.000 0.088
#> SRR1643316 1 0.2149 0.8660 0.912 0.000 0.000 0.088
#> SRR1643317 1 0.2149 0.8660 0.912 0.000 0.000 0.088
#> SRR1643318 1 0.2149 0.8660 0.912 0.000 0.000 0.088
#> SRR1643319 1 0.2149 0.8660 0.912 0.000 0.000 0.088
#> SRR1643320 1 0.2149 0.8660 0.912 0.000 0.000 0.088
#> SRR1643321 1 0.2216 0.8637 0.908 0.000 0.000 0.092
#> SRR1643322 1 0.2149 0.8660 0.912 0.000 0.000 0.088
#> SRR1643323 1 0.2149 0.8660 0.912 0.000 0.000 0.088
#> SRR1643324 1 0.2216 0.8637 0.908 0.000 0.000 0.092
#> SRR1643325 1 0.2149 0.8660 0.912 0.000 0.000 0.088
#> SRR1643326 1 0.2216 0.8637 0.908 0.000 0.000 0.092
#> SRR1643327 1 0.2149 0.8660 0.912 0.000 0.000 0.088
#> SRR1643328 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643329 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643330 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643331 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643332 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643333 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643334 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643335 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643336 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643337 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643338 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643339 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643340 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643341 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643342 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643343 1 0.2408 0.8555 0.896 0.000 0.000 0.104
#> SRR1643344 1 0.2408 0.8561 0.896 0.000 0.000 0.104
#> SRR1643345 1 0.2530 0.8495 0.888 0.000 0.000 0.112
#> SRR1643346 1 0.2408 0.8561 0.896 0.000 0.000 0.104
#> SRR1643347 1 0.2345 0.8584 0.900 0.000 0.000 0.100
#> SRR1643348 1 0.2704 0.8386 0.876 0.000 0.000 0.124
#> SRR1643349 1 0.2345 0.8584 0.900 0.000 0.000 0.100
#> SRR1643350 1 0.2408 0.8561 0.896 0.000 0.000 0.104
#> SRR1643351 1 0.2345 0.8584 0.900 0.000 0.000 0.100
#> SRR1643352 1 0.2408 0.8561 0.896 0.000 0.000 0.104
#> SRR1643353 1 0.2345 0.8584 0.900 0.000 0.000 0.100
#> SRR1643354 1 0.2530 0.8500 0.888 0.000 0.000 0.112
#> SRR1643355 1 0.2530 0.8503 0.888 0.000 0.000 0.112
#> SRR1643356 1 0.2469 0.8534 0.892 0.000 0.000 0.108
#> SRR1643357 1 0.2647 0.8424 0.880 0.000 0.000 0.120
#> SRR1643358 4 0.4040 0.9591 0.248 0.000 0.000 0.752
#> SRR1643359 4 0.4103 0.9587 0.256 0.000 0.000 0.744
#> SRR1643360 4 0.4040 0.9591 0.248 0.000 0.000 0.752
#> SRR1643361 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643362 4 0.4072 0.9591 0.252 0.000 0.000 0.748
#> SRR1643363 4 0.4072 0.9591 0.252 0.000 0.000 0.748
#> SRR1643364 4 0.4040 0.9591 0.248 0.000 0.000 0.752
#> SRR1643365 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643366 4 0.4072 0.9591 0.252 0.000 0.000 0.748
#> SRR1643367 4 0.4103 0.9587 0.256 0.000 0.000 0.744
#> SRR1643368 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643369 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643370 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643371 4 0.4134 0.9573 0.260 0.000 0.000 0.740
#> SRR1643372 4 0.4040 0.9591 0.248 0.000 0.000 0.752
#> SRR1643373 4 0.3837 0.9551 0.224 0.000 0.000 0.776
#> SRR1643374 4 0.3837 0.9551 0.224 0.000 0.000 0.776
#> SRR1643375 4 0.3837 0.9551 0.224 0.000 0.000 0.776
#> SRR1643376 4 0.3837 0.9551 0.224 0.000 0.000 0.776
#> SRR1643377 4 0.3837 0.9551 0.224 0.000 0.000 0.776
#> SRR1643378 4 0.3873 0.9563 0.228 0.000 0.000 0.772
#> SRR1643379 4 0.3837 0.9551 0.224 0.000 0.000 0.776
#> SRR1643380 4 0.3837 0.9551 0.224 0.000 0.000 0.776
#> SRR1643381 4 0.3907 0.9570 0.232 0.000 0.000 0.768
#> SRR1643382 4 0.3873 0.9563 0.228 0.000 0.000 0.772
#> SRR1643383 4 0.3837 0.9551 0.224 0.000 0.000 0.776
#> SRR1643384 4 0.3873 0.9563 0.228 0.000 0.000 0.772
#> SRR1643385 4 0.3837 0.9551 0.224 0.000 0.000 0.776
#> SRR1643386 4 0.3837 0.9551 0.224 0.000 0.000 0.776
#> SRR1643387 4 0.3837 0.9551 0.224 0.000 0.000 0.776
#> SRR1643388 4 0.3837 0.9551 0.224 0.000 0.000 0.776
#> SRR1643389 4 0.3873 0.9563 0.228 0.000 0.000 0.772
#> SRR1643390 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643391 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643392 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643393 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643394 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643395 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643396 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643397 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643398 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643399 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643400 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643401 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643402 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643403 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643404 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643405 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643406 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643407 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643408 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643409 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643410 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643411 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643412 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643413 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643414 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643415 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643416 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643417 1 0.0000 0.8878 1.000 0.000 0.000 0.000
#> SRR1643418 4 0.3569 0.9367 0.196 0.000 0.000 0.804
#> SRR1643419 4 0.3569 0.9367 0.196 0.000 0.000 0.804
#> SRR1643420 4 0.3569 0.9367 0.196 0.000 0.000 0.804
#> SRR1643421 4 0.3610 0.9399 0.200 0.000 0.000 0.800
#> SRR1643422 4 0.3610 0.9399 0.200 0.000 0.000 0.800
#> SRR1643423 4 0.3610 0.9399 0.200 0.000 0.000 0.800
#> SRR1643424 4 0.3569 0.9367 0.196 0.000 0.000 0.804
#> SRR1643425 4 0.3569 0.9367 0.196 0.000 0.000 0.804
#> SRR1643426 4 0.3610 0.9399 0.200 0.000 0.000 0.800
#> SRR1643427 4 0.3610 0.9399 0.200 0.000 0.000 0.800
#> SRR1643428 4 0.3610 0.9399 0.200 0.000 0.000 0.800
#> SRR1643429 4 0.3569 0.9367 0.196 0.000 0.000 0.804
#> SRR1643430 4 0.3444 0.9251 0.184 0.000 0.000 0.816
#> SRR1643431 4 0.3444 0.9251 0.184 0.000 0.000 0.816
#> SRR1643432 4 0.3444 0.9251 0.184 0.000 0.000 0.816
#> SRR1643433 4 0.3444 0.9251 0.184 0.000 0.000 0.816
#> SRR1643434 4 0.3444 0.9251 0.184 0.000 0.000 0.816
#> SRR1643435 4 0.3444 0.9251 0.184 0.000 0.000 0.816
#> SRR1643436 4 0.3444 0.9251 0.184 0.000 0.000 0.816
#> SRR1643437 4 0.3444 0.9251 0.184 0.000 0.000 0.816
#> SRR1643438 4 0.3444 0.9251 0.184 0.000 0.000 0.816
#> SRR1643439 4 0.3444 0.9251 0.184 0.000 0.000 0.816
#> SRR1643440 4 0.3444 0.9251 0.184 0.000 0.000 0.816
#> SRR1643441 4 0.3444 0.9251 0.184 0.000 0.000 0.816
#> SRR1643442 4 0.3444 0.9251 0.184 0.000 0.000 0.816
#> SRR1643443 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643444 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643445 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643446 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643447 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643448 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643449 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643450 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643451 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643452 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643453 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643454 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643455 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643456 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643457 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643458 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643459 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643460 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643461 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643462 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643463 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643464 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643466 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643467 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643468 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643469 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643470 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643471 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643472 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643473 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643474 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643475 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643477 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643478 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643479 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643480 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643481 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643482 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643483 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643484 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643485 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643486 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643487 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643488 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643489 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643490 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643491 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643492 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643493 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643494 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643495 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643496 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643497 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643498 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643499 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643500 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643501 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643502 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643503 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643504 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643505 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643506 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643507 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643508 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643509 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643510 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643511 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643512 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643513 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643531 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643532 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643533 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643534 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643535 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643536 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643537 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643538 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643539 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643540 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643541 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643542 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643543 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643544 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643514 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643515 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643516 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643517 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643518 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643519 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643520 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643521 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643522 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643523 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643524 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643525 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643526 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643527 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643528 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643529 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643530 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643545 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643546 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643547 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643548 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643549 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643550 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643551 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643552 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643553 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643554 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643555 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643556 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643558 2 0.0000 0.9871 0.000 1.000 0.000 0.000
#> SRR1643559 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643560 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643561 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643562 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643563 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643564 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643565 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643566 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643567 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643568 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643569 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643570 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643571 2 0.1022 0.9847 0.000 0.968 0.000 0.032
#> SRR1643572 2 0.1022 0.9847 0.000 0.968 0.000 0.032
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 1 0.1892 0.8924 0.916 0.000 0.000 0.004 0.080
#> SRR1643168 1 0.1892 0.8924 0.916 0.000 0.000 0.004 0.080
#> SRR1643169 1 0.1892 0.8924 0.916 0.000 0.000 0.004 0.080
#> SRR1643170 1 0.2052 0.8913 0.912 0.000 0.004 0.004 0.080
#> SRR1643171 1 0.2130 0.8857 0.908 0.000 0.012 0.000 0.080
#> SRR1643172 1 0.2130 0.8857 0.908 0.000 0.012 0.000 0.080
#> SRR1643173 1 0.2130 0.8857 0.908 0.000 0.012 0.000 0.080
#> SRR1643174 1 0.2130 0.8857 0.908 0.000 0.012 0.000 0.080
#> SRR1643175 1 0.1981 0.8993 0.920 0.000 0.000 0.016 0.064
#> SRR1643176 1 0.2079 0.8994 0.916 0.000 0.000 0.020 0.064
#> SRR1643177 1 0.2079 0.9002 0.916 0.000 0.000 0.020 0.064
#> SRR1643178 1 0.2079 0.9002 0.916 0.000 0.000 0.020 0.064
#> SRR1643180 1 0.2189 0.8840 0.904 0.000 0.012 0.000 0.084
#> SRR1643181 1 0.2189 0.8840 0.904 0.000 0.012 0.000 0.084
#> SRR1643182 1 0.2293 0.8822 0.900 0.000 0.016 0.000 0.084
#> SRR1643183 1 0.2248 0.8825 0.900 0.000 0.012 0.000 0.088
#> SRR1643184 1 0.2248 0.8825 0.900 0.000 0.012 0.000 0.088
#> SRR1643185 1 0.2351 0.8804 0.896 0.000 0.016 0.000 0.088
#> SRR1643186 1 0.2248 0.8825 0.900 0.000 0.012 0.000 0.088
#> SRR1643187 1 0.1845 0.9002 0.928 0.000 0.000 0.016 0.056
#> SRR1643188 1 0.1809 0.8998 0.928 0.000 0.000 0.012 0.060
#> SRR1643189 1 0.1845 0.9002 0.928 0.000 0.000 0.016 0.056
#> SRR1643190 1 0.1845 0.9002 0.928 0.000 0.000 0.016 0.056
#> SRR1643191 1 0.2289 0.8869 0.904 0.000 0.012 0.004 0.080
#> SRR1643192 1 0.2289 0.8869 0.904 0.000 0.012 0.004 0.080
#> SRR1643193 1 0.2270 0.8945 0.904 0.000 0.000 0.020 0.076
#> SRR1643194 1 0.2172 0.8942 0.908 0.000 0.000 0.016 0.076
#> SRR1643195 1 0.5420 0.4248 0.592 0.000 0.000 0.332 0.076
#> SRR1643196 1 0.5390 0.4457 0.600 0.000 0.000 0.324 0.076
#> SRR1643197 1 0.1877 0.8988 0.924 0.000 0.000 0.012 0.064
#> SRR1643198 1 0.1877 0.8988 0.924 0.000 0.000 0.012 0.064
#> SRR1643199 1 0.2362 0.8893 0.900 0.000 0.008 0.008 0.084
#> SRR1643200 1 0.2362 0.8893 0.900 0.000 0.008 0.008 0.084
#> SRR1643201 1 0.2491 0.8926 0.896 0.000 0.000 0.036 0.068
#> SRR1643202 1 0.2491 0.8926 0.896 0.000 0.000 0.036 0.068
#> SRR1643203 1 0.1764 0.8982 0.928 0.000 0.000 0.008 0.064
#> SRR1643204 1 0.1764 0.8982 0.928 0.000 0.000 0.008 0.064
#> SRR1643205 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643206 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643207 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643208 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643209 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643210 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643211 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643212 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643213 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643214 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643215 3 0.0162 0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643216 3 0.0162 0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643217 3 0.0162 0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643218 3 0.0162 0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643219 3 0.0162 0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643220 3 0.0162 0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643221 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643222 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643223 3 0.0162 0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643224 3 0.0162 0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643225 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643226 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643227 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643228 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643229 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643230 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643231 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643232 3 0.0162 0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643233 3 0.0451 0.9912 0.008 0.000 0.988 0.000 0.004
#> SRR1643234 3 0.0451 0.9912 0.008 0.000 0.988 0.000 0.004
#> SRR1643235 3 0.0162 0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643236 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643237 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643238 3 0.0162 0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643239 3 0.0162 0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643240 3 0.0162 0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643241 3 0.0162 0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643242 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643243 3 0.0162 0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643245 3 0.0162 0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643246 3 0.0162 0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643247 3 0.0162 0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643248 3 0.0000 0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643249 3 0.1195 0.9720 0.012 0.000 0.960 0.000 0.028
#> SRR1643250 4 0.2574 0.9053 0.112 0.000 0.000 0.876 0.012
#> SRR1643251 4 0.2624 0.9021 0.116 0.000 0.000 0.872 0.012
#> SRR1643252 4 0.2624 0.9021 0.116 0.000 0.000 0.872 0.012
#> SRR1643253 4 0.2624 0.9021 0.116 0.000 0.000 0.872 0.012
#> SRR1643254 4 0.2818 0.8874 0.132 0.000 0.000 0.856 0.012
#> SRR1643255 4 0.2624 0.9021 0.116 0.000 0.000 0.872 0.012
#> SRR1643256 4 0.2624 0.9021 0.116 0.000 0.000 0.872 0.012
#> SRR1643257 4 0.2624 0.9021 0.116 0.000 0.000 0.872 0.012
#> SRR1643258 4 0.2574 0.9053 0.112 0.000 0.000 0.876 0.012
#> SRR1643259 4 0.2723 0.8952 0.124 0.000 0.000 0.864 0.012
#> SRR1643260 4 0.2624 0.9021 0.116 0.000 0.000 0.872 0.012
#> SRR1643261 4 0.2624 0.9021 0.116 0.000 0.000 0.872 0.012
#> SRR1643262 4 0.2464 0.9153 0.096 0.000 0.000 0.888 0.016
#> SRR1643263 4 0.2464 0.9153 0.096 0.000 0.000 0.888 0.016
#> SRR1643264 4 0.2408 0.9169 0.092 0.000 0.000 0.892 0.016
#> SRR1643266 4 0.2408 0.9169 0.092 0.000 0.000 0.892 0.016
#> SRR1643267 4 0.2464 0.9153 0.096 0.000 0.000 0.888 0.016
#> SRR1643268 4 0.2408 0.9169 0.092 0.000 0.000 0.892 0.016
#> SRR1643269 4 0.2464 0.9153 0.096 0.000 0.000 0.888 0.016
#> SRR1643270 4 0.2505 0.9163 0.092 0.000 0.000 0.888 0.020
#> SRR1643271 4 0.2408 0.9169 0.092 0.000 0.000 0.892 0.016
#> SRR1643272 4 0.2505 0.9163 0.092 0.000 0.000 0.888 0.020
#> SRR1643273 1 0.3477 0.8477 0.832 0.000 0.000 0.112 0.056
#> SRR1643274 1 0.3669 0.8309 0.816 0.000 0.000 0.128 0.056
#> SRR1643275 1 0.3593 0.8436 0.824 0.000 0.000 0.116 0.060
#> SRR1643276 1 0.3477 0.8477 0.832 0.000 0.000 0.112 0.056
#> SRR1643277 1 0.3269 0.8617 0.848 0.000 0.000 0.096 0.056
#> SRR1643278 1 0.3159 0.8680 0.856 0.000 0.000 0.088 0.056
#> SRR1643279 1 0.3390 0.8586 0.840 0.000 0.000 0.100 0.060
#> SRR1643280 1 0.3527 0.8437 0.828 0.000 0.000 0.116 0.056
#> SRR1643281 1 0.3575 0.8399 0.824 0.000 0.000 0.120 0.056
#> SRR1643282 1 0.3336 0.8619 0.844 0.000 0.000 0.096 0.060
#> SRR1643283 1 0.3159 0.8678 0.856 0.000 0.000 0.088 0.056
#> SRR1643284 1 0.3622 0.8358 0.820 0.000 0.000 0.124 0.056
#> SRR1643285 1 0.3622 0.8354 0.820 0.000 0.000 0.124 0.056
#> SRR1643286 1 0.3102 0.8704 0.860 0.000 0.000 0.084 0.056
#> SRR1643287 4 0.2793 0.9066 0.088 0.000 0.000 0.876 0.036
#> SRR1643288 4 0.2554 0.9147 0.072 0.000 0.000 0.892 0.036
#> SRR1643289 4 0.2654 0.9125 0.084 0.000 0.000 0.884 0.032
#> SRR1643290 4 0.2535 0.9153 0.076 0.000 0.000 0.892 0.032
#> SRR1643291 4 0.2676 0.9117 0.080 0.000 0.000 0.884 0.036
#> SRR1643292 4 0.2554 0.9147 0.072 0.000 0.000 0.892 0.036
#> SRR1643293 4 0.2793 0.9077 0.088 0.000 0.000 0.876 0.036
#> SRR1643294 4 0.2793 0.9066 0.088 0.000 0.000 0.876 0.036
#> SRR1643295 4 0.2793 0.9066 0.088 0.000 0.000 0.876 0.036
#> SRR1643296 4 0.2654 0.9116 0.084 0.000 0.000 0.884 0.032
#> SRR1643297 4 0.2616 0.9129 0.076 0.000 0.000 0.888 0.036
#> SRR1643298 4 0.2735 0.9092 0.084 0.000 0.000 0.880 0.036
#> SRR1643299 4 0.2595 0.9136 0.080 0.000 0.000 0.888 0.032
#> SRR1643300 4 0.2793 0.9077 0.088 0.000 0.000 0.876 0.036
#> SRR1643301 4 0.4767 0.3167 0.420 0.000 0.000 0.560 0.020
#> SRR1643302 1 0.4821 0.0565 0.516 0.000 0.000 0.464 0.020
#> SRR1643303 4 0.4803 0.2314 0.444 0.000 0.000 0.536 0.020
#> SRR1643304 4 0.4829 0.0866 0.480 0.000 0.000 0.500 0.020
#> SRR1643305 1 0.4824 0.0370 0.512 0.000 0.000 0.468 0.020
#> SRR1643306 1 0.4821 0.0507 0.516 0.000 0.000 0.464 0.020
#> SRR1643307 4 0.4787 0.2744 0.432 0.000 0.000 0.548 0.020
#> SRR1643308 1 0.4815 0.0917 0.524 0.000 0.000 0.456 0.020
#> SRR1643309 4 0.4697 0.4083 0.388 0.000 0.000 0.592 0.020
#> SRR1643310 4 0.4626 0.4675 0.364 0.000 0.000 0.616 0.020
#> SRR1643311 4 0.4686 0.4180 0.384 0.000 0.000 0.596 0.020
#> SRR1643312 1 0.4726 0.3021 0.580 0.000 0.000 0.400 0.020
#> SRR1643313 4 0.4807 0.2217 0.448 0.000 0.000 0.532 0.020
#> SRR1643314 1 0.1661 0.9055 0.940 0.000 0.000 0.036 0.024
#> SRR1643315 1 0.1750 0.9052 0.936 0.000 0.000 0.036 0.028
#> SRR1643316 1 0.1918 0.9044 0.928 0.000 0.000 0.036 0.036
#> SRR1643317 1 0.1836 0.9049 0.932 0.000 0.000 0.036 0.032
#> SRR1643318 1 0.1661 0.9055 0.940 0.000 0.000 0.036 0.024
#> SRR1643319 1 0.1918 0.9043 0.928 0.000 0.000 0.036 0.036
#> SRR1643320 1 0.1750 0.9052 0.936 0.000 0.000 0.036 0.028
#> SRR1643321 1 0.1750 0.9052 0.936 0.000 0.000 0.036 0.028
#> SRR1643322 1 0.1918 0.9043 0.928 0.000 0.000 0.036 0.036
#> SRR1643323 1 0.1836 0.9048 0.932 0.000 0.000 0.036 0.032
#> SRR1643324 1 0.1836 0.9048 0.932 0.000 0.000 0.036 0.032
#> SRR1643325 1 0.1750 0.9052 0.936 0.000 0.000 0.036 0.028
#> SRR1643326 1 0.1661 0.9056 0.940 0.000 0.000 0.036 0.024
#> SRR1643327 1 0.1836 0.9048 0.932 0.000 0.000 0.036 0.032
#> SRR1643328 1 0.0324 0.9050 0.992 0.000 0.004 0.000 0.004
#> SRR1643329 1 0.0451 0.9047 0.988 0.000 0.004 0.000 0.008
#> SRR1643330 1 0.0162 0.9051 0.996 0.000 0.004 0.000 0.000
#> SRR1643331 1 0.0162 0.9051 0.996 0.000 0.004 0.000 0.000
#> SRR1643332 1 0.0324 0.9047 0.992 0.000 0.004 0.000 0.004
#> SRR1643333 1 0.0324 0.9050 0.992 0.000 0.004 0.000 0.004
#> SRR1643334 1 0.0162 0.9051 0.996 0.000 0.004 0.000 0.000
#> SRR1643335 1 0.0162 0.9051 0.996 0.000 0.004 0.000 0.000
#> SRR1643336 1 0.0324 0.9047 0.992 0.000 0.004 0.000 0.004
#> SRR1643337 1 0.0162 0.9051 0.996 0.000 0.004 0.000 0.000
#> SRR1643338 1 0.0324 0.9050 0.992 0.000 0.004 0.000 0.004
#> SRR1643339 1 0.0162 0.9051 0.996 0.000 0.004 0.000 0.000
#> SRR1643340 1 0.0324 0.9050 0.992 0.000 0.004 0.000 0.004
#> SRR1643341 1 0.0162 0.9051 0.996 0.000 0.004 0.000 0.000
#> SRR1643342 1 0.0324 0.9050 0.992 0.000 0.004 0.000 0.004
#> SRR1643343 1 0.3758 0.8492 0.816 0.000 0.000 0.096 0.088
#> SRR1643344 1 0.3754 0.8479 0.816 0.000 0.000 0.100 0.084
#> SRR1643345 1 0.3704 0.8529 0.820 0.000 0.000 0.092 0.088
#> SRR1643346 1 0.3648 0.8550 0.824 0.000 0.000 0.092 0.084
#> SRR1643347 1 0.3536 0.8610 0.832 0.000 0.000 0.084 0.084
#> SRR1643348 1 0.3862 0.8417 0.808 0.000 0.000 0.104 0.088
#> SRR1643349 1 0.3649 0.8561 0.824 0.000 0.000 0.088 0.088
#> SRR1643350 1 0.3648 0.8550 0.824 0.000 0.000 0.092 0.084
#> SRR1643351 1 0.3420 0.8666 0.840 0.000 0.000 0.076 0.084
#> SRR1643352 1 0.3648 0.8548 0.824 0.000 0.000 0.092 0.084
#> SRR1643353 1 0.3593 0.8580 0.828 0.000 0.000 0.088 0.084
#> SRR1643354 1 0.3758 0.8492 0.816 0.000 0.000 0.096 0.088
#> SRR1643355 1 0.3955 0.8321 0.800 0.000 0.000 0.116 0.084
#> SRR1643356 1 0.3702 0.8513 0.820 0.000 0.000 0.096 0.084
#> SRR1643357 1 0.3810 0.8455 0.812 0.000 0.000 0.100 0.088
#> SRR1643358 4 0.1877 0.9234 0.064 0.000 0.000 0.924 0.012
#> SRR1643359 4 0.2270 0.9219 0.076 0.000 0.000 0.904 0.020
#> SRR1643360 4 0.1942 0.9236 0.068 0.000 0.000 0.920 0.012
#> SRR1643361 4 0.2208 0.9223 0.072 0.000 0.000 0.908 0.020
#> SRR1643362 4 0.1981 0.9231 0.064 0.000 0.000 0.920 0.016
#> SRR1643363 4 0.2046 0.9231 0.068 0.000 0.000 0.916 0.016
#> SRR1643364 4 0.1981 0.9231 0.064 0.000 0.000 0.920 0.016
#> SRR1643365 4 0.2270 0.9221 0.076 0.000 0.000 0.904 0.020
#> SRR1643366 4 0.1942 0.9235 0.068 0.000 0.000 0.920 0.012
#> SRR1643367 4 0.2270 0.9219 0.076 0.000 0.000 0.904 0.020
#> SRR1643368 4 0.2208 0.9223 0.072 0.000 0.000 0.908 0.020
#> SRR1643369 4 0.2172 0.9222 0.076 0.000 0.000 0.908 0.016
#> SRR1643370 4 0.2270 0.9219 0.076 0.000 0.000 0.904 0.020
#> SRR1643371 4 0.2172 0.9220 0.076 0.000 0.000 0.908 0.016
#> SRR1643372 4 0.1981 0.9231 0.064 0.000 0.000 0.920 0.016
#> SRR1643373 4 0.1408 0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643374 4 0.1522 0.9219 0.044 0.000 0.000 0.944 0.012
#> SRR1643375 4 0.1408 0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643376 4 0.1408 0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643377 4 0.1408 0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643378 4 0.1522 0.9219 0.044 0.000 0.000 0.944 0.012
#> SRR1643379 4 0.1408 0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643380 4 0.1522 0.9219 0.044 0.000 0.000 0.944 0.012
#> SRR1643381 4 0.1557 0.9233 0.052 0.000 0.000 0.940 0.008
#> SRR1643382 4 0.1408 0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643383 4 0.1522 0.9219 0.044 0.000 0.000 0.944 0.012
#> SRR1643384 4 0.1408 0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643385 4 0.1522 0.9219 0.044 0.000 0.000 0.944 0.012
#> SRR1643386 4 0.1408 0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643387 4 0.1408 0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643388 4 0.1408 0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643389 4 0.1408 0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643390 1 0.1444 0.9041 0.948 0.000 0.000 0.012 0.040
#> SRR1643391 1 0.1364 0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643392 1 0.1251 0.9040 0.956 0.000 0.000 0.008 0.036
#> SRR1643393 1 0.1364 0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643394 1 0.1364 0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643395 1 0.1364 0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643396 1 0.1364 0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643397 1 0.1364 0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643398 1 0.1364 0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643399 1 0.1364 0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643400 1 0.1364 0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643401 1 0.1364 0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643402 1 0.1364 0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643403 1 0.1364 0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643404 1 0.1364 0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643405 1 0.1697 0.9001 0.932 0.000 0.000 0.008 0.060
#> SRR1643406 1 0.1697 0.9001 0.932 0.000 0.000 0.008 0.060
#> SRR1643407 1 0.1697 0.9001 0.932 0.000 0.000 0.008 0.060
#> SRR1643408 1 0.1764 0.8992 0.928 0.000 0.000 0.008 0.064
#> SRR1643409 1 0.1557 0.9015 0.940 0.000 0.000 0.008 0.052
#> SRR1643410 1 0.1697 0.9001 0.932 0.000 0.000 0.008 0.060
#> SRR1643411 1 0.1697 0.9001 0.932 0.000 0.000 0.008 0.060
#> SRR1643412 1 0.1697 0.9001 0.932 0.000 0.000 0.008 0.060
#> SRR1643413 1 0.1628 0.9008 0.936 0.000 0.000 0.008 0.056
#> SRR1643414 1 0.1628 0.9008 0.936 0.000 0.000 0.008 0.056
#> SRR1643415 1 0.1697 0.9001 0.932 0.000 0.000 0.008 0.060
#> SRR1643416 1 0.1697 0.9001 0.932 0.000 0.000 0.008 0.060
#> SRR1643417 1 0.1697 0.9001 0.932 0.000 0.000 0.008 0.060
#> SRR1643418 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643419 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643420 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643421 4 0.0703 0.9114 0.024 0.000 0.000 0.976 0.000
#> SRR1643422 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643423 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643424 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643425 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643426 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643427 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643428 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643429 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643430 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643431 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643432 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643433 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643434 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643435 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643436 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643437 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643438 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643439 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643440 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643441 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643442 4 0.0609 0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643443 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643444 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643445 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643446 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643447 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643448 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643449 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643450 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643451 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643452 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643453 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643454 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643455 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643456 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643457 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643458 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643459 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643460 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643461 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643462 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643463 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643464 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643466 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643467 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643468 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643469 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643470 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643471 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643472 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643473 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643474 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643475 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643477 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643478 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643479 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643480 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643481 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643482 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643483 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643484 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643485 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643486 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643487 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643488 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643489 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643490 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643491 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643492 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643493 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643494 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643495 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643496 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643497 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643498 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643499 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643500 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643501 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643502 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643503 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643504 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643505 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643506 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643507 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643508 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643509 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643510 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643511 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643512 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643513 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643531 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643532 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643533 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643534 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643535 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643536 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643537 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643538 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643539 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643540 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643541 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643542 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643543 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643544 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643514 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643515 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643516 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643517 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643518 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643519 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643520 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643521 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643522 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643523 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643524 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643525 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643526 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643527 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643528 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643529 2 0.0162 0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643530 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643545 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643546 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643547 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643548 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643549 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643550 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643551 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643552 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643553 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643554 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643555 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643556 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643558 2 0.3395 0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643559 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643560 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643561 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643562 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643563 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643564 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643565 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643566 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643567 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643568 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643569 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643570 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643571 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643572 2 0.0000 0.8769 0.000 1.000 0.000 0.000 0.000
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 1 0.5947 0.6040 0.524 0.000 0.008 0.004 0.284 NA
#> SRR1643168 1 0.5933 0.6071 0.528 0.000 0.008 0.004 0.280 NA
#> SRR1643169 1 0.5908 0.6103 0.532 0.000 0.008 0.004 0.280 NA
#> SRR1643170 1 0.5947 0.6040 0.524 0.000 0.008 0.004 0.284 NA
#> SRR1643171 1 0.6035 0.6018 0.520 0.000 0.012 0.004 0.284 NA
#> SRR1643172 1 0.6035 0.6018 0.520 0.000 0.012 0.004 0.284 NA
#> SRR1643173 1 0.6035 0.6018 0.520 0.000 0.012 0.004 0.284 NA
#> SRR1643174 1 0.6035 0.6018 0.520 0.000 0.012 0.004 0.284 NA
#> SRR1643175 1 0.5333 0.6321 0.564 0.000 0.000 0.000 0.300 NA
#> SRR1643176 1 0.5304 0.6367 0.572 0.000 0.000 0.000 0.292 NA
#> SRR1643177 1 0.5319 0.6341 0.568 0.000 0.000 0.000 0.296 NA
#> SRR1643178 1 0.5333 0.6320 0.564 0.000 0.000 0.000 0.300 NA
#> SRR1643180 1 0.6163 0.5669 0.484 0.000 0.020 0.000 0.312 NA
#> SRR1643181 1 0.6163 0.5669 0.484 0.000 0.020 0.000 0.312 NA
#> SRR1643182 1 0.6163 0.5669 0.484 0.000 0.020 0.000 0.312 NA
#> SRR1643183 1 0.6121 0.5641 0.480 0.000 0.016 0.000 0.316 NA
#> SRR1643184 1 0.6121 0.5641 0.480 0.000 0.016 0.000 0.316 NA
#> SRR1643185 1 0.6121 0.5641 0.480 0.000 0.016 0.000 0.316 NA
#> SRR1643186 1 0.6121 0.5641 0.480 0.000 0.016 0.000 0.316 NA
#> SRR1643187 1 0.5466 0.6521 0.596 0.000 0.000 0.008 0.240 NA
#> SRR1643188 1 0.5466 0.6521 0.596 0.000 0.000 0.008 0.240 NA
#> SRR1643189 1 0.5466 0.6521 0.596 0.000 0.000 0.008 0.240 NA
#> SRR1643190 1 0.5466 0.6521 0.596 0.000 0.000 0.008 0.240 NA
#> SRR1643191 1 0.5933 0.6101 0.532 0.000 0.016 0.000 0.276 NA
#> SRR1643192 1 0.5908 0.6133 0.536 0.000 0.016 0.000 0.276 NA
#> SRR1643193 1 0.5861 0.6100 0.536 0.000 0.000 0.012 0.272 NA
#> SRR1643194 1 0.5861 0.6100 0.536 0.000 0.000 0.012 0.272 NA
#> SRR1643195 5 0.7372 -0.0544 0.280 0.000 0.000 0.148 0.384 NA
#> SRR1643196 5 0.7393 -0.0544 0.280 0.000 0.000 0.152 0.380 NA
#> SRR1643197 1 0.5612 0.6329 0.564 0.000 0.008 0.000 0.272 NA
#> SRR1643198 1 0.5612 0.6329 0.564 0.000 0.008 0.000 0.272 NA
#> SRR1643199 1 0.5978 0.5864 0.504 0.000 0.012 0.000 0.300 NA
#> SRR1643200 1 0.5978 0.5864 0.504 0.000 0.012 0.000 0.300 NA
#> SRR1643201 1 0.6271 0.5594 0.484 0.000 0.004 0.020 0.312 NA
#> SRR1643202 1 0.6271 0.5594 0.484 0.000 0.004 0.020 0.312 NA
#> SRR1643203 1 0.5592 0.6402 0.576 0.000 0.004 0.004 0.260 NA
#> SRR1643204 1 0.5592 0.6402 0.576 0.000 0.004 0.004 0.260 NA
#> SRR1643205 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643206 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643207 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643208 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643209 3 0.0146 0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643210 3 0.0146 0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643211 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643212 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643213 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643214 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643215 3 0.0146 0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643216 3 0.0146 0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643217 3 0.0146 0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643218 3 0.0146 0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643219 3 0.0146 0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643220 3 0.0146 0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643221 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643222 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643223 3 0.0146 0.9965 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643224 3 0.0146 0.9965 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643225 3 0.0146 0.9965 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643226 3 0.0146 0.9965 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643227 3 0.0146 0.9965 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643228 3 0.0146 0.9965 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643229 3 0.0146 0.9965 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643230 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643231 3 0.0146 0.9965 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643232 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643233 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643234 3 0.0146 0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643235 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643236 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643237 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643238 3 0.0146 0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643239 3 0.0146 0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643240 3 0.0146 0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643241 3 0.0146 0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643242 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643243 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643245 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643246 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643247 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643248 3 0.0000 0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643249 3 0.1549 0.9504 0.000 0.000 0.936 0.000 0.044 NA
#> SRR1643250 4 0.4576 0.6844 0.016 0.000 0.000 0.504 0.468 NA
#> SRR1643251 4 0.4649 0.6785 0.020 0.000 0.000 0.504 0.464 NA
#> SRR1643252 4 0.4576 0.6844 0.016 0.000 0.000 0.504 0.468 NA
#> SRR1643253 4 0.4656 0.6758 0.016 0.000 0.000 0.500 0.468 NA
#> SRR1643254 4 0.4650 0.6730 0.020 0.000 0.000 0.500 0.468 NA
#> SRR1643255 4 0.4649 0.6785 0.020 0.000 0.000 0.504 0.464 NA
#> SRR1643256 4 0.4649 0.6785 0.020 0.000 0.000 0.504 0.464 NA
#> SRR1643257 4 0.4576 0.6844 0.016 0.000 0.000 0.504 0.468 NA
#> SRR1643258 4 0.4654 0.6806 0.016 0.000 0.000 0.504 0.464 NA
#> SRR1643259 4 0.4649 0.6785 0.020 0.000 0.000 0.504 0.464 NA
#> SRR1643260 4 0.4650 0.6730 0.020 0.000 0.000 0.500 0.468 NA
#> SRR1643261 4 0.4649 0.6785 0.020 0.000 0.000 0.504 0.464 NA
#> SRR1643262 4 0.4411 0.6998 0.008 0.000 0.000 0.504 0.476 NA
#> SRR1643263 4 0.4406 0.7084 0.008 0.000 0.000 0.516 0.464 NA
#> SRR1643264 4 0.4411 0.7024 0.008 0.000 0.000 0.504 0.476 NA
#> SRR1643266 4 0.4412 0.7070 0.008 0.000 0.000 0.500 0.480 NA
#> SRR1643267 4 0.4410 0.7054 0.008 0.000 0.000 0.508 0.472 NA
#> SRR1643268 4 0.4413 0.6921 0.008 0.000 0.000 0.496 0.484 NA
#> SRR1643269 4 0.4403 0.7099 0.008 0.000 0.000 0.520 0.460 NA
#> SRR1643270 4 0.4406 0.7093 0.008 0.000 0.000 0.516 0.464 NA
#> SRR1643271 4 0.4488 0.7102 0.008 0.000 0.000 0.508 0.468 NA
#> SRR1643272 4 0.4411 0.6999 0.008 0.000 0.000 0.504 0.476 NA
#> SRR1643273 1 0.3161 0.7253 0.848 0.000 0.000 0.020 0.040 NA
#> SRR1643274 1 0.3358 0.7183 0.836 0.000 0.000 0.024 0.044 NA
#> SRR1643275 1 0.3142 0.7258 0.848 0.000 0.000 0.016 0.044 NA
#> SRR1643276 1 0.3191 0.7236 0.844 0.000 0.000 0.016 0.044 NA
#> SRR1643277 1 0.3172 0.7242 0.844 0.000 0.000 0.016 0.040 NA
#> SRR1643278 1 0.3142 0.7287 0.848 0.000 0.000 0.016 0.044 NA
#> SRR1643279 1 0.3351 0.7173 0.840 0.000 0.000 0.028 0.048 NA
#> SRR1643280 1 0.3142 0.7255 0.848 0.000 0.000 0.016 0.044 NA
#> SRR1643281 1 0.3453 0.7144 0.828 0.000 0.000 0.024 0.044 NA
#> SRR1643282 1 0.2973 0.7311 0.860 0.000 0.000 0.016 0.040 NA
#> SRR1643283 1 0.3228 0.7263 0.844 0.000 0.000 0.020 0.044 NA
#> SRR1643284 1 0.3423 0.7148 0.832 0.000 0.000 0.024 0.048 NA
#> SRR1643285 1 0.3509 0.7119 0.824 0.000 0.000 0.028 0.040 NA
#> SRR1643286 1 0.2797 0.7366 0.872 0.000 0.000 0.016 0.036 NA
#> SRR1643287 4 0.5946 0.5895 0.080 0.000 0.000 0.488 0.384 NA
#> SRR1643288 4 0.5882 0.6005 0.080 0.000 0.000 0.500 0.376 NA
#> SRR1643289 4 0.5667 0.6266 0.060 0.000 0.000 0.516 0.380 NA
#> SRR1643290 4 0.5846 0.6064 0.076 0.000 0.000 0.500 0.380 NA
#> SRR1643291 4 0.5888 0.6010 0.080 0.000 0.000 0.496 0.380 NA
#> SRR1643292 4 0.5852 0.6017 0.076 0.000 0.000 0.496 0.384 NA
#> SRR1643293 4 0.6004 0.5742 0.092 0.000 0.000 0.484 0.380 NA
#> SRR1643294 4 0.6088 0.5638 0.096 0.000 0.000 0.480 0.376 NA
#> SRR1643295 4 0.6019 0.5758 0.088 0.000 0.000 0.484 0.380 NA
#> SRR1643296 4 0.5852 0.6007 0.076 0.000 0.000 0.496 0.384 NA
#> SRR1643297 4 0.5928 0.5878 0.084 0.000 0.000 0.492 0.380 NA
#> SRR1643298 4 0.5846 0.6013 0.076 0.000 0.000 0.500 0.380 NA
#> SRR1643299 4 0.5766 0.6177 0.068 0.000 0.000 0.504 0.384 NA
#> SRR1643300 4 0.5810 0.6060 0.072 0.000 0.000 0.500 0.384 NA
#> SRR1643301 4 0.6282 0.2282 0.280 0.000 0.000 0.436 0.272 NA
#> SRR1643302 4 0.6444 0.0529 0.364 0.000 0.000 0.380 0.236 NA
#> SRR1643303 4 0.6401 0.1896 0.300 0.000 0.000 0.412 0.272 NA
#> SRR1643304 4 0.6315 0.1058 0.336 0.000 0.000 0.404 0.248 NA
#> SRR1643305 4 0.6455 0.0967 0.332 0.000 0.000 0.400 0.248 NA
#> SRR1643306 4 0.6441 0.1290 0.320 0.000 0.000 0.412 0.248 NA
#> SRR1643307 4 0.6217 0.2371 0.272 0.000 0.000 0.432 0.288 NA
#> SRR1643308 4 0.6300 0.0570 0.360 0.000 0.000 0.392 0.236 NA
#> SRR1643309 4 0.6222 0.2987 0.240 0.000 0.000 0.452 0.296 NA
#> SRR1643310 4 0.6267 0.3326 0.224 0.000 0.000 0.452 0.308 NA
#> SRR1643311 4 0.6211 0.3134 0.232 0.000 0.000 0.452 0.304 NA
#> SRR1643312 1 0.6421 -0.2902 0.400 0.000 0.000 0.368 0.208 NA
#> SRR1643313 4 0.6292 0.2277 0.276 0.000 0.000 0.432 0.280 NA
#> SRR1643314 1 0.3419 0.7573 0.824 0.000 0.000 0.008 0.072 NA
#> SRR1643315 1 0.4041 0.7423 0.772 0.000 0.000 0.008 0.108 NA
#> SRR1643316 1 0.4168 0.7391 0.760 0.000 0.000 0.008 0.112 NA
#> SRR1643317 1 0.3528 0.7555 0.816 0.000 0.000 0.008 0.084 NA
#> SRR1643318 1 0.3472 0.7564 0.820 0.000 0.000 0.008 0.076 NA
#> SRR1643319 1 0.4084 0.7414 0.768 0.000 0.000 0.008 0.112 NA
#> SRR1643320 1 0.3952 0.7456 0.780 0.000 0.000 0.008 0.104 NA
#> SRR1643321 1 0.3768 0.7522 0.796 0.000 0.000 0.008 0.092 NA
#> SRR1643322 1 0.4039 0.7427 0.772 0.000 0.000 0.008 0.104 NA
#> SRR1643323 1 0.3816 0.7492 0.792 0.000 0.000 0.008 0.096 NA
#> SRR1643324 1 0.3860 0.7481 0.788 0.000 0.000 0.008 0.096 NA
#> SRR1643325 1 0.3576 0.7545 0.812 0.000 0.000 0.008 0.084 NA
#> SRR1643326 1 0.3477 0.7563 0.820 0.000 0.000 0.008 0.080 NA
#> SRR1643327 1 0.3860 0.7481 0.788 0.000 0.000 0.008 0.096 NA
#> SRR1643328 1 0.2740 0.7637 0.864 0.000 0.000 0.000 0.060 NA
#> SRR1643329 1 0.2910 0.7628 0.852 0.000 0.000 0.000 0.068 NA
#> SRR1643330 1 0.2910 0.7628 0.852 0.000 0.000 0.000 0.068 NA
#> SRR1643331 1 0.2852 0.7631 0.856 0.000 0.000 0.000 0.064 NA
#> SRR1643332 1 0.2685 0.7641 0.868 0.000 0.000 0.000 0.060 NA
#> SRR1643333 1 0.2905 0.7626 0.852 0.000 0.000 0.000 0.064 NA
#> SRR1643334 1 0.3261 0.7588 0.824 0.000 0.000 0.000 0.072 NA
#> SRR1643335 1 0.2962 0.7620 0.848 0.000 0.000 0.000 0.068 NA
#> SRR1643336 1 0.2685 0.7641 0.868 0.000 0.000 0.000 0.060 NA
#> SRR1643337 1 0.2799 0.7635 0.860 0.000 0.000 0.000 0.064 NA
#> SRR1643338 1 0.2852 0.7631 0.856 0.000 0.000 0.000 0.064 NA
#> SRR1643339 1 0.2852 0.7631 0.856 0.000 0.000 0.000 0.064 NA
#> SRR1643340 1 0.3172 0.7595 0.832 0.000 0.000 0.000 0.076 NA
#> SRR1643341 1 0.3068 0.7611 0.840 0.000 0.000 0.000 0.072 NA
#> SRR1643342 1 0.2856 0.7635 0.856 0.000 0.000 0.000 0.068 NA
#> SRR1643343 1 0.3979 0.6831 0.772 0.000 0.000 0.016 0.052 NA
#> SRR1643344 1 0.4038 0.6818 0.768 0.000 0.000 0.016 0.056 NA
#> SRR1643345 1 0.3979 0.6831 0.772 0.000 0.000 0.016 0.052 NA
#> SRR1643346 1 0.4038 0.6818 0.768 0.000 0.000 0.016 0.056 NA
#> SRR1643347 1 0.3918 0.6888 0.776 0.000 0.000 0.016 0.048 NA
#> SRR1643348 1 0.4038 0.6818 0.768 0.000 0.000 0.016 0.056 NA
#> SRR1643349 1 0.4038 0.6818 0.768 0.000 0.000 0.016 0.056 NA
#> SRR1643350 1 0.4003 0.6845 0.772 0.000 0.000 0.016 0.056 NA
#> SRR1643351 1 0.3979 0.6855 0.772 0.000 0.000 0.016 0.052 NA
#> SRR1643352 1 0.4038 0.6818 0.768 0.000 0.000 0.016 0.056 NA
#> SRR1643353 1 0.4003 0.6845 0.772 0.000 0.000 0.016 0.056 NA
#> SRR1643354 1 0.3979 0.6831 0.772 0.000 0.000 0.016 0.052 NA
#> SRR1643355 1 0.4152 0.6741 0.760 0.000 0.000 0.016 0.064 NA
#> SRR1643356 1 0.4038 0.6818 0.768 0.000 0.000 0.016 0.056 NA
#> SRR1643357 1 0.4096 0.6753 0.764 0.000 0.000 0.016 0.060 NA
#> SRR1643358 4 0.4315 0.6853 0.004 0.000 0.000 0.496 0.488 NA
#> SRR1643359 4 0.4493 0.6703 0.008 0.000 0.000 0.492 0.484 NA
#> SRR1643360 4 0.4493 0.6703 0.008 0.000 0.000 0.492 0.484 NA
#> SRR1643361 4 0.4493 0.6703 0.008 0.000 0.000 0.492 0.484 NA
#> SRR1643362 4 0.4315 0.6853 0.004 0.000 0.000 0.496 0.488 NA
#> SRR1643363 4 0.4493 0.6703 0.008 0.000 0.000 0.492 0.484 NA
#> SRR1643364 4 0.4412 0.6891 0.008 0.000 0.000 0.500 0.480 NA
#> SRR1643365 5 0.4493 -0.7281 0.008 0.000 0.000 0.484 0.492 NA
#> SRR1643366 4 0.4315 0.6806 0.004 0.000 0.000 0.492 0.492 NA
#> SRR1643367 5 0.4493 -0.7328 0.008 0.000 0.000 0.488 0.488 NA
#> SRR1643368 5 0.4493 -0.7328 0.008 0.000 0.000 0.488 0.488 NA
#> SRR1643369 4 0.4413 0.6779 0.008 0.000 0.000 0.492 0.488 NA
#> SRR1643370 4 0.4493 0.6703 0.008 0.000 0.000 0.492 0.484 NA
#> SRR1643371 4 0.4492 0.6754 0.008 0.000 0.000 0.496 0.480 NA
#> SRR1643372 4 0.4315 0.6853 0.004 0.000 0.000 0.496 0.488 NA
#> SRR1643373 4 0.4122 0.7187 0.004 0.000 0.000 0.520 0.472 NA
#> SRR1643374 4 0.3993 0.7167 0.004 0.000 0.000 0.520 0.476 NA
#> SRR1643375 4 0.4120 0.7187 0.004 0.000 0.000 0.524 0.468 NA
#> SRR1643376 4 0.3991 0.7174 0.004 0.000 0.000 0.524 0.472 NA
#> SRR1643377 4 0.4120 0.7187 0.004 0.000 0.000 0.524 0.468 NA
#> SRR1643378 4 0.4122 0.7187 0.004 0.000 0.000 0.520 0.472 NA
#> SRR1643379 4 0.4120 0.7187 0.004 0.000 0.000 0.524 0.468 NA
#> SRR1643380 4 0.4120 0.7187 0.004 0.000 0.000 0.524 0.468 NA
#> SRR1643381 4 0.4323 0.7117 0.008 0.000 0.000 0.508 0.476 NA
#> SRR1643382 4 0.4124 0.7157 0.004 0.000 0.000 0.516 0.476 NA
#> SRR1643383 4 0.4120 0.7187 0.004 0.000 0.000 0.524 0.468 NA
#> SRR1643384 4 0.3993 0.7167 0.004 0.000 0.000 0.520 0.476 NA
#> SRR1643385 4 0.4091 0.7168 0.008 0.000 0.000 0.520 0.472 NA
#> SRR1643386 4 0.4120 0.7187 0.004 0.000 0.000 0.524 0.468 NA
#> SRR1643387 4 0.3993 0.7167 0.004 0.000 0.000 0.520 0.476 NA
#> SRR1643388 4 0.4122 0.7187 0.004 0.000 0.000 0.520 0.472 NA
#> SRR1643389 4 0.3993 0.7167 0.004 0.000 0.000 0.520 0.476 NA
#> SRR1643390 1 0.0363 0.7638 0.988 0.000 0.000 0.000 0.000 NA
#> SRR1643391 1 0.0000 0.7654 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1643392 1 0.0146 0.7649 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1643393 1 0.0000 0.7654 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1643394 1 0.0000 0.7654 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1643395 1 0.0146 0.7649 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1643396 1 0.0146 0.7649 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1643397 1 0.0000 0.7654 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1643398 1 0.0291 0.7655 0.992 0.000 0.000 0.000 0.004 NA
#> SRR1643399 1 0.0146 0.7657 0.996 0.000 0.000 0.000 0.004 NA
#> SRR1643400 1 0.0146 0.7653 0.996 0.000 0.000 0.000 0.004 NA
#> SRR1643401 1 0.0000 0.7654 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1643402 1 0.0000 0.7654 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1643403 1 0.0146 0.7649 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1643404 1 0.0146 0.7649 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1643405 1 0.1866 0.7470 0.908 0.000 0.000 0.000 0.008 NA
#> SRR1643406 1 0.1967 0.7457 0.904 0.000 0.000 0.000 0.012 NA
#> SRR1643407 1 0.1866 0.7470 0.908 0.000 0.000 0.000 0.008 NA
#> SRR1643408 1 0.1967 0.7457 0.904 0.000 0.000 0.000 0.012 NA
#> SRR1643409 1 0.1866 0.7470 0.908 0.000 0.000 0.000 0.008 NA
#> SRR1643410 1 0.1918 0.7460 0.904 0.000 0.000 0.000 0.008 NA
#> SRR1643411 1 0.1866 0.7470 0.908 0.000 0.000 0.000 0.008 NA
#> SRR1643412 1 0.1967 0.7457 0.904 0.000 0.000 0.000 0.012 NA
#> SRR1643413 1 0.1866 0.7470 0.908 0.000 0.000 0.000 0.008 NA
#> SRR1643414 1 0.2019 0.7442 0.900 0.000 0.000 0.000 0.012 NA
#> SRR1643415 1 0.2070 0.7432 0.896 0.000 0.000 0.000 0.012 NA
#> SRR1643416 1 0.1866 0.7470 0.908 0.000 0.000 0.000 0.008 NA
#> SRR1643417 1 0.1967 0.7457 0.904 0.000 0.000 0.000 0.012 NA
#> SRR1643418 4 0.4057 0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643419 4 0.4057 0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643420 4 0.4057 0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643421 4 0.4184 0.7252 0.004 0.000 0.000 0.556 0.432 NA
#> SRR1643422 4 0.4057 0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643423 4 0.4057 0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643424 4 0.4057 0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643425 4 0.4057 0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643426 4 0.4057 0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643427 4 0.4057 0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643428 4 0.4057 0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643429 4 0.4057 0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643430 4 0.4051 0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643431 4 0.4051 0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643432 4 0.4051 0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643433 4 0.4051 0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643434 4 0.4045 0.7205 0.000 0.000 0.000 0.564 0.428 NA
#> SRR1643435 4 0.4051 0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643436 4 0.4051 0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643437 4 0.4051 0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643438 4 0.4051 0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643439 4 0.4051 0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643440 4 0.4051 0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643441 4 0.4051 0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643442 4 0.4051 0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643443 2 0.0405 0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643444 2 0.0405 0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643445 2 0.0405 0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643446 2 0.0405 0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643447 2 0.0405 0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643448 2 0.0291 0.7565 0.000 0.992 0.000 0.004 0.000 NA
#> SRR1643449 2 0.0405 0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643450 2 0.0405 0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643451 2 0.0405 0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643452 2 0.0405 0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643453 2 0.0405 0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643454 2 0.0405 0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643455 2 0.0405 0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643456 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643457 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643458 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643459 2 0.3817 0.8030 0.000 0.568 0.000 0.432 0.000 NA
#> SRR1643460 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643461 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643462 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643463 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643464 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643466 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643467 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643468 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643469 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643470 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643471 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643472 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643473 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643474 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643475 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643477 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643478 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643479 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643480 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643481 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643482 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643483 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643484 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643485 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643486 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643487 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643488 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643489 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643490 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643491 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643492 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643493 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643494 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643495 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643496 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643497 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643498 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643499 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643500 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643501 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643502 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643503 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643504 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643505 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643506 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643507 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643508 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643509 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643510 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643511 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643512 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643513 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643531 2 0.0405 0.7554 0.000 0.988 0.000 0.004 0.000 NA
#> SRR1643532 2 0.0405 0.7554 0.000 0.988 0.000 0.004 0.000 NA
#> SRR1643533 2 0.0260 0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643534 2 0.0260 0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643535 2 0.0260 0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643536 2 0.0260 0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643537 2 0.0260 0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643538 2 0.0260 0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643539 2 0.0260 0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643540 2 0.0260 0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643541 2 0.0405 0.7554 0.000 0.988 0.000 0.004 0.000 NA
#> SRR1643542 2 0.0260 0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643543 2 0.0260 0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643544 2 0.0260 0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643514 2 0.0363 0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643515 2 0.0260 0.7519 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643516 2 0.0363 0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643517 2 0.0260 0.7518 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643518 2 0.0363 0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643519 2 0.0363 0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643520 2 0.0363 0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643521 2 0.0363 0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643522 2 0.0653 0.7494 0.000 0.980 0.000 0.004 0.004 NA
#> SRR1643523 2 0.0363 0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643524 2 0.0363 0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643525 2 0.0363 0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643526 2 0.0363 0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643527 2 0.0363 0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643528 2 0.0363 0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643529 2 0.0363 0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643530 2 0.0260 0.7518 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643545 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643546 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643547 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643548 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643549 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643550 2 0.3817 0.8030 0.000 0.568 0.000 0.432 0.000 NA
#> SRR1643551 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643552 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643553 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643554 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643555 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643556 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643558 2 0.3823 0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643559 2 0.0000 0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643560 2 0.0000 0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643561 2 0.0000 0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643562 2 0.0000 0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643563 2 0.0000 0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643564 2 0.0000 0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643565 2 0.0000 0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643566 2 0.0000 0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643567 2 0.0000 0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643568 2 0.0000 0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643569 2 0.0000 0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643570 2 0.0000 0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643571 2 0.0000 0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643572 2 0.0000 0.7554 0.000 1.000 0.000 0.000 0.000 NA
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["CV", "hclust"]
# you can also extract it by
# res = res_list["CV:hclust"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'CV' method.
#> Subgroups are detected by 'hclust' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 3.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.4350 0.566 0.566
#> 3 3 1.000 0.998 0.998 0.2916 0.874 0.777
#> 4 4 0.782 0.905 0.922 0.1613 0.877 0.720
#> 5 5 0.819 0.870 0.934 0.0531 0.998 0.995
#> 6 6 0.775 0.774 0.863 0.0667 0.948 0.835
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 3
#> attr(,"optional")
#> [1] 2
There is also optional best \(k\) = 2 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.0424 0.995 0.992 0 0.008
#> SRR1643168 1 0.0424 0.995 0.992 0 0.008
#> SRR1643169 1 0.0424 0.995 0.992 0 0.008
#> SRR1643170 1 0.0424 0.995 0.992 0 0.008
#> SRR1643171 1 0.0424 0.995 0.992 0 0.008
#> SRR1643172 1 0.0424 0.995 0.992 0 0.008
#> SRR1643173 1 0.0424 0.995 0.992 0 0.008
#> SRR1643174 1 0.0424 0.995 0.992 0 0.008
#> SRR1643175 1 0.0424 0.995 0.992 0 0.008
#> SRR1643176 1 0.0424 0.995 0.992 0 0.008
#> SRR1643177 1 0.0424 0.995 0.992 0 0.008
#> SRR1643178 1 0.0424 0.995 0.992 0 0.008
#> SRR1643180 1 0.0424 0.995 0.992 0 0.008
#> SRR1643181 1 0.0424 0.995 0.992 0 0.008
#> SRR1643182 1 0.0424 0.995 0.992 0 0.008
#> SRR1643183 1 0.0424 0.995 0.992 0 0.008
#> SRR1643184 1 0.0424 0.995 0.992 0 0.008
#> SRR1643185 1 0.0424 0.995 0.992 0 0.008
#> SRR1643186 1 0.0424 0.995 0.992 0 0.008
#> SRR1643187 1 0.0000 0.997 1.000 0 0.000
#> SRR1643188 1 0.0000 0.997 1.000 0 0.000
#> SRR1643189 1 0.0000 0.997 1.000 0 0.000
#> SRR1643190 1 0.0000 0.997 1.000 0 0.000
#> SRR1643191 1 0.0424 0.995 0.992 0 0.008
#> SRR1643192 1 0.0424 0.995 0.992 0 0.008
#> SRR1643193 1 0.0424 0.995 0.992 0 0.008
#> SRR1643194 1 0.0424 0.995 0.992 0 0.008
#> SRR1643195 1 0.0000 0.997 1.000 0 0.000
#> SRR1643196 1 0.0000 0.997 1.000 0 0.000
#> SRR1643197 1 0.0424 0.995 0.992 0 0.008
#> SRR1643198 1 0.0424 0.995 0.992 0 0.008
#> SRR1643199 1 0.0424 0.995 0.992 0 0.008
#> SRR1643200 1 0.0424 0.995 0.992 0 0.008
#> SRR1643201 1 0.0000 0.997 1.000 0 0.000
#> SRR1643202 1 0.0000 0.997 1.000 0 0.000
#> SRR1643203 1 0.0000 0.997 1.000 0 0.000
#> SRR1643204 1 0.0000 0.997 1.000 0 0.000
#> SRR1643205 3 0.0000 0.999 0.000 0 1.000
#> SRR1643206 3 0.0000 0.999 0.000 0 1.000
#> SRR1643207 3 0.0000 0.999 0.000 0 1.000
#> SRR1643208 3 0.0000 0.999 0.000 0 1.000
#> SRR1643209 3 0.0000 0.999 0.000 0 1.000
#> SRR1643210 3 0.0000 0.999 0.000 0 1.000
#> SRR1643211 3 0.0000 0.999 0.000 0 1.000
#> SRR1643212 3 0.0000 0.999 0.000 0 1.000
#> SRR1643213 3 0.0000 0.999 0.000 0 1.000
#> SRR1643214 3 0.0000 0.999 0.000 0 1.000
#> SRR1643215 3 0.0000 0.999 0.000 0 1.000
#> SRR1643216 3 0.0000 0.999 0.000 0 1.000
#> SRR1643217 3 0.0000 0.999 0.000 0 1.000
#> SRR1643218 3 0.0000 0.999 0.000 0 1.000
#> SRR1643219 3 0.0000 0.999 0.000 0 1.000
#> SRR1643220 3 0.0000 0.999 0.000 0 1.000
#> SRR1643221 3 0.0000 0.999 0.000 0 1.000
#> SRR1643222 3 0.0000 0.999 0.000 0 1.000
#> SRR1643223 3 0.0000 0.999 0.000 0 1.000
#> SRR1643224 3 0.0000 0.999 0.000 0 1.000
#> SRR1643225 3 0.0000 0.999 0.000 0 1.000
#> SRR1643226 3 0.0000 0.999 0.000 0 1.000
#> SRR1643227 3 0.0000 0.999 0.000 0 1.000
#> SRR1643228 3 0.0000 0.999 0.000 0 1.000
#> SRR1643229 3 0.0000 0.999 0.000 0 1.000
#> SRR1643230 3 0.0000 0.999 0.000 0 1.000
#> SRR1643231 3 0.0000 0.999 0.000 0 1.000
#> SRR1643232 3 0.0000 0.999 0.000 0 1.000
#> SRR1643233 3 0.0000 0.999 0.000 0 1.000
#> SRR1643234 3 0.0000 0.999 0.000 0 1.000
#> SRR1643235 3 0.0000 0.999 0.000 0 1.000
#> SRR1643236 3 0.0000 0.999 0.000 0 1.000
#> SRR1643237 3 0.0000 0.999 0.000 0 1.000
#> SRR1643238 3 0.0000 0.999 0.000 0 1.000
#> SRR1643239 3 0.0000 0.999 0.000 0 1.000
#> SRR1643240 3 0.0000 0.999 0.000 0 1.000
#> SRR1643241 3 0.0000 0.999 0.000 0 1.000
#> SRR1643242 3 0.0000 0.999 0.000 0 1.000
#> SRR1643243 3 0.0000 0.999 0.000 0 1.000
#> SRR1643245 3 0.0000 0.999 0.000 0 1.000
#> SRR1643246 3 0.0000 0.999 0.000 0 1.000
#> SRR1643247 3 0.0000 0.999 0.000 0 1.000
#> SRR1643248 3 0.0000 0.999 0.000 0 1.000
#> SRR1643249 3 0.0892 0.975 0.020 0 0.980
#> SRR1643250 1 0.0000 0.997 1.000 0 0.000
#> SRR1643251 1 0.0000 0.997 1.000 0 0.000
#> SRR1643252 1 0.0000 0.997 1.000 0 0.000
#> SRR1643253 1 0.0000 0.997 1.000 0 0.000
#> SRR1643254 1 0.0000 0.997 1.000 0 0.000
#> SRR1643255 1 0.0000 0.997 1.000 0 0.000
#> SRR1643256 1 0.0000 0.997 1.000 0 0.000
#> SRR1643257 1 0.0000 0.997 1.000 0 0.000
#> SRR1643258 1 0.0000 0.997 1.000 0 0.000
#> SRR1643259 1 0.0000 0.997 1.000 0 0.000
#> SRR1643260 1 0.0000 0.997 1.000 0 0.000
#> SRR1643261 1 0.0000 0.997 1.000 0 0.000
#> SRR1643262 1 0.0000 0.997 1.000 0 0.000
#> SRR1643263 1 0.0000 0.997 1.000 0 0.000
#> SRR1643264 1 0.0000 0.997 1.000 0 0.000
#> SRR1643266 1 0.0000 0.997 1.000 0 0.000
#> SRR1643267 1 0.0000 0.997 1.000 0 0.000
#> SRR1643268 1 0.0000 0.997 1.000 0 0.000
#> SRR1643269 1 0.0000 0.997 1.000 0 0.000
#> SRR1643270 1 0.0000 0.997 1.000 0 0.000
#> SRR1643271 1 0.0000 0.997 1.000 0 0.000
#> SRR1643272 1 0.0000 0.997 1.000 0 0.000
#> SRR1643273 1 0.0000 0.997 1.000 0 0.000
#> SRR1643274 1 0.0000 0.997 1.000 0 0.000
#> SRR1643275 1 0.0000 0.997 1.000 0 0.000
#> SRR1643276 1 0.0000 0.997 1.000 0 0.000
#> SRR1643277 1 0.0000 0.997 1.000 0 0.000
#> SRR1643278 1 0.0000 0.997 1.000 0 0.000
#> SRR1643279 1 0.0000 0.997 1.000 0 0.000
#> SRR1643280 1 0.0000 0.997 1.000 0 0.000
#> SRR1643281 1 0.0000 0.997 1.000 0 0.000
#> SRR1643282 1 0.0000 0.997 1.000 0 0.000
#> SRR1643283 1 0.0000 0.997 1.000 0 0.000
#> SRR1643284 1 0.0000 0.997 1.000 0 0.000
#> SRR1643285 1 0.0000 0.997 1.000 0 0.000
#> SRR1643286 1 0.0000 0.997 1.000 0 0.000
#> SRR1643287 1 0.0000 0.997 1.000 0 0.000
#> SRR1643288 1 0.0000 0.997 1.000 0 0.000
#> SRR1643289 1 0.0000 0.997 1.000 0 0.000
#> SRR1643290 1 0.0000 0.997 1.000 0 0.000
#> SRR1643291 1 0.0000 0.997 1.000 0 0.000
#> SRR1643292 1 0.0000 0.997 1.000 0 0.000
#> SRR1643293 1 0.0000 0.997 1.000 0 0.000
#> SRR1643294 1 0.0000 0.997 1.000 0 0.000
#> SRR1643295 1 0.0000 0.997 1.000 0 0.000
#> SRR1643296 1 0.0000 0.997 1.000 0 0.000
#> SRR1643297 1 0.0000 0.997 1.000 0 0.000
#> SRR1643298 1 0.0000 0.997 1.000 0 0.000
#> SRR1643299 1 0.0000 0.997 1.000 0 0.000
#> SRR1643300 1 0.0000 0.997 1.000 0 0.000
#> SRR1643301 1 0.0000 0.997 1.000 0 0.000
#> SRR1643302 1 0.0000 0.997 1.000 0 0.000
#> SRR1643303 1 0.0000 0.997 1.000 0 0.000
#> SRR1643304 1 0.0000 0.997 1.000 0 0.000
#> SRR1643305 1 0.0000 0.997 1.000 0 0.000
#> SRR1643306 1 0.0000 0.997 1.000 0 0.000
#> SRR1643307 1 0.0000 0.997 1.000 0 0.000
#> SRR1643308 1 0.0000 0.997 1.000 0 0.000
#> SRR1643309 1 0.0000 0.997 1.000 0 0.000
#> SRR1643310 1 0.0000 0.997 1.000 0 0.000
#> SRR1643311 1 0.0000 0.997 1.000 0 0.000
#> SRR1643312 1 0.0000 0.997 1.000 0 0.000
#> SRR1643313 1 0.0000 0.997 1.000 0 0.000
#> SRR1643314 1 0.0000 0.997 1.000 0 0.000
#> SRR1643315 1 0.0000 0.997 1.000 0 0.000
#> SRR1643316 1 0.0000 0.997 1.000 0 0.000
#> SRR1643317 1 0.0000 0.997 1.000 0 0.000
#> SRR1643318 1 0.0000 0.997 1.000 0 0.000
#> SRR1643319 1 0.0000 0.997 1.000 0 0.000
#> SRR1643320 1 0.0000 0.997 1.000 0 0.000
#> SRR1643321 1 0.0000 0.997 1.000 0 0.000
#> SRR1643322 1 0.0000 0.997 1.000 0 0.000
#> SRR1643323 1 0.0000 0.997 1.000 0 0.000
#> SRR1643324 1 0.0000 0.997 1.000 0 0.000
#> SRR1643325 1 0.0000 0.997 1.000 0 0.000
#> SRR1643326 1 0.0000 0.997 1.000 0 0.000
#> SRR1643327 1 0.0000 0.997 1.000 0 0.000
#> SRR1643328 1 0.0424 0.995 0.992 0 0.008
#> SRR1643329 1 0.0424 0.995 0.992 0 0.008
#> SRR1643330 1 0.0424 0.995 0.992 0 0.008
#> SRR1643331 1 0.0424 0.995 0.992 0 0.008
#> SRR1643332 1 0.0424 0.995 0.992 0 0.008
#> SRR1643333 1 0.0424 0.995 0.992 0 0.008
#> SRR1643334 1 0.0424 0.995 0.992 0 0.008
#> SRR1643335 1 0.0424 0.995 0.992 0 0.008
#> SRR1643336 1 0.0424 0.995 0.992 0 0.008
#> SRR1643337 1 0.0424 0.995 0.992 0 0.008
#> SRR1643338 1 0.0424 0.995 0.992 0 0.008
#> SRR1643339 1 0.0424 0.995 0.992 0 0.008
#> SRR1643340 1 0.0424 0.995 0.992 0 0.008
#> SRR1643341 1 0.0424 0.995 0.992 0 0.008
#> SRR1643342 1 0.0424 0.995 0.992 0 0.008
#> SRR1643343 1 0.0424 0.995 0.992 0 0.008
#> SRR1643344 1 0.0424 0.995 0.992 0 0.008
#> SRR1643345 1 0.0424 0.995 0.992 0 0.008
#> SRR1643346 1 0.0424 0.995 0.992 0 0.008
#> SRR1643347 1 0.0424 0.995 0.992 0 0.008
#> SRR1643348 1 0.0424 0.995 0.992 0 0.008
#> SRR1643349 1 0.0424 0.995 0.992 0 0.008
#> SRR1643350 1 0.0424 0.995 0.992 0 0.008
#> SRR1643351 1 0.0424 0.995 0.992 0 0.008
#> SRR1643352 1 0.0424 0.995 0.992 0 0.008
#> SRR1643353 1 0.0424 0.995 0.992 0 0.008
#> SRR1643354 1 0.0424 0.995 0.992 0 0.008
#> SRR1643355 1 0.0424 0.995 0.992 0 0.008
#> SRR1643356 1 0.0424 0.995 0.992 0 0.008
#> SRR1643357 1 0.0424 0.995 0.992 0 0.008
#> SRR1643358 1 0.0000 0.997 1.000 0 0.000
#> SRR1643359 1 0.0000 0.997 1.000 0 0.000
#> SRR1643360 1 0.0000 0.997 1.000 0 0.000
#> SRR1643361 1 0.0000 0.997 1.000 0 0.000
#> SRR1643362 1 0.0000 0.997 1.000 0 0.000
#> SRR1643363 1 0.0000 0.997 1.000 0 0.000
#> SRR1643364 1 0.0000 0.997 1.000 0 0.000
#> SRR1643365 1 0.0000 0.997 1.000 0 0.000
#> SRR1643366 1 0.0000 0.997 1.000 0 0.000
#> SRR1643367 1 0.0000 0.997 1.000 0 0.000
#> SRR1643368 1 0.0000 0.997 1.000 0 0.000
#> SRR1643369 1 0.0000 0.997 1.000 0 0.000
#> SRR1643370 1 0.0000 0.997 1.000 0 0.000
#> SRR1643371 1 0.0000 0.997 1.000 0 0.000
#> SRR1643372 1 0.0000 0.997 1.000 0 0.000
#> SRR1643373 1 0.0000 0.997 1.000 0 0.000
#> SRR1643374 1 0.0000 0.997 1.000 0 0.000
#> SRR1643375 1 0.0000 0.997 1.000 0 0.000
#> SRR1643376 1 0.0000 0.997 1.000 0 0.000
#> SRR1643377 1 0.0000 0.997 1.000 0 0.000
#> SRR1643378 1 0.0000 0.997 1.000 0 0.000
#> SRR1643379 1 0.0000 0.997 1.000 0 0.000
#> SRR1643380 1 0.0000 0.997 1.000 0 0.000
#> SRR1643381 1 0.0000 0.997 1.000 0 0.000
#> SRR1643382 1 0.0000 0.997 1.000 0 0.000
#> SRR1643383 1 0.0000 0.997 1.000 0 0.000
#> SRR1643384 1 0.0000 0.997 1.000 0 0.000
#> SRR1643385 1 0.0000 0.997 1.000 0 0.000
#> SRR1643386 1 0.0000 0.997 1.000 0 0.000
#> SRR1643387 1 0.0000 0.997 1.000 0 0.000
#> SRR1643388 1 0.0000 0.997 1.000 0 0.000
#> SRR1643389 1 0.0000 0.997 1.000 0 0.000
#> SRR1643390 1 0.0424 0.995 0.992 0 0.008
#> SRR1643391 1 0.0424 0.995 0.992 0 0.008
#> SRR1643392 1 0.0424 0.995 0.992 0 0.008
#> SRR1643393 1 0.0424 0.995 0.992 0 0.008
#> SRR1643394 1 0.0424 0.995 0.992 0 0.008
#> SRR1643395 1 0.0424 0.995 0.992 0 0.008
#> SRR1643396 1 0.0424 0.995 0.992 0 0.008
#> SRR1643397 1 0.0424 0.995 0.992 0 0.008
#> SRR1643398 1 0.0424 0.995 0.992 0 0.008
#> SRR1643399 1 0.0424 0.995 0.992 0 0.008
#> SRR1643400 1 0.0424 0.995 0.992 0 0.008
#> SRR1643401 1 0.0424 0.995 0.992 0 0.008
#> SRR1643402 1 0.0424 0.995 0.992 0 0.008
#> SRR1643403 1 0.0424 0.995 0.992 0 0.008
#> SRR1643404 1 0.0424 0.995 0.992 0 0.008
#> SRR1643405 1 0.0424 0.995 0.992 0 0.008
#> SRR1643406 1 0.0424 0.995 0.992 0 0.008
#> SRR1643407 1 0.0424 0.995 0.992 0 0.008
#> SRR1643408 1 0.0424 0.995 0.992 0 0.008
#> SRR1643409 1 0.0424 0.995 0.992 0 0.008
#> SRR1643410 1 0.0424 0.995 0.992 0 0.008
#> SRR1643411 1 0.0424 0.995 0.992 0 0.008
#> SRR1643412 1 0.0424 0.995 0.992 0 0.008
#> SRR1643413 1 0.0424 0.995 0.992 0 0.008
#> SRR1643414 1 0.0424 0.995 0.992 0 0.008
#> SRR1643415 1 0.0424 0.995 0.992 0 0.008
#> SRR1643416 1 0.0424 0.995 0.992 0 0.008
#> SRR1643417 1 0.0424 0.995 0.992 0 0.008
#> SRR1643418 1 0.0000 0.997 1.000 0 0.000
#> SRR1643419 1 0.0000 0.997 1.000 0 0.000
#> SRR1643420 1 0.0000 0.997 1.000 0 0.000
#> SRR1643421 1 0.0000 0.997 1.000 0 0.000
#> SRR1643422 1 0.0000 0.997 1.000 0 0.000
#> SRR1643423 1 0.0000 0.997 1.000 0 0.000
#> SRR1643424 1 0.0000 0.997 1.000 0 0.000
#> SRR1643425 1 0.0000 0.997 1.000 0 0.000
#> SRR1643426 1 0.0000 0.997 1.000 0 0.000
#> SRR1643427 1 0.0000 0.997 1.000 0 0.000
#> SRR1643428 1 0.0000 0.997 1.000 0 0.000
#> SRR1643429 1 0.0000 0.997 1.000 0 0.000
#> SRR1643430 1 0.0000 0.997 1.000 0 0.000
#> SRR1643431 1 0.0000 0.997 1.000 0 0.000
#> SRR1643432 1 0.0000 0.997 1.000 0 0.000
#> SRR1643433 1 0.0000 0.997 1.000 0 0.000
#> SRR1643434 1 0.0000 0.997 1.000 0 0.000
#> SRR1643435 1 0.0000 0.997 1.000 0 0.000
#> SRR1643436 1 0.0000 0.997 1.000 0 0.000
#> SRR1643437 1 0.0000 0.997 1.000 0 0.000
#> SRR1643438 1 0.0000 0.997 1.000 0 0.000
#> SRR1643439 1 0.0000 0.997 1.000 0 0.000
#> SRR1643440 1 0.0000 0.997 1.000 0 0.000
#> SRR1643441 1 0.0000 0.997 1.000 0 0.000
#> SRR1643442 1 0.0000 0.997 1.000 0 0.000
#> SRR1643443 2 0.0000 1.000 0.000 1 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0.000
#> SRR1643505 2 0.0000 1.000 0.000 1 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643168 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643169 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643170 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643171 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643172 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643173 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643174 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643175 1 0.0672 0.903 0.984 0.000 0.008 0.008
#> SRR1643176 1 0.0672 0.903 0.984 0.000 0.008 0.008
#> SRR1643177 1 0.0672 0.903 0.984 0.000 0.008 0.008
#> SRR1643178 1 0.0672 0.903 0.984 0.000 0.008 0.008
#> SRR1643180 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643181 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643182 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643183 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643184 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643185 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643186 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643187 1 0.0336 0.902 0.992 0.000 0.000 0.008
#> SRR1643188 1 0.0336 0.902 0.992 0.000 0.000 0.008
#> SRR1643189 1 0.0336 0.902 0.992 0.000 0.000 0.008
#> SRR1643190 1 0.0336 0.902 0.992 0.000 0.000 0.008
#> SRR1643191 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643192 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643193 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643194 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643195 1 0.0817 0.896 0.976 0.000 0.000 0.024
#> SRR1643196 1 0.0817 0.896 0.976 0.000 0.000 0.024
#> SRR1643197 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643198 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643199 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643200 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643201 1 0.0000 0.902 1.000 0.000 0.000 0.000
#> SRR1643202 1 0.0000 0.902 1.000 0.000 0.000 0.000
#> SRR1643203 1 0.0336 0.902 0.992 0.000 0.000 0.008
#> SRR1643204 1 0.0336 0.902 0.992 0.000 0.000 0.008
#> SRR1643205 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643206 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643207 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643208 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643209 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643210 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643211 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643212 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643213 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643214 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643215 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643216 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643217 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643218 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643219 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643220 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643221 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643222 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643223 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643224 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643225 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643226 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643227 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643228 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643229 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643230 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643231 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643232 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643233 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643234 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643235 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643236 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643237 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643238 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643239 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643240 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643241 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643242 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643243 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643245 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643246 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643247 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643248 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643249 3 0.0707 0.973 0.020 0.000 0.980 0.000
#> SRR1643250 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643251 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643252 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643253 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643254 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643255 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643256 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643257 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643258 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643259 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643260 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643261 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643262 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643263 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643264 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643266 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643267 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643268 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643269 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643270 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643271 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643272 1 0.2973 0.790 0.856 0.000 0.000 0.144
#> SRR1643273 1 0.2814 0.804 0.868 0.000 0.000 0.132
#> SRR1643274 1 0.2814 0.804 0.868 0.000 0.000 0.132
#> SRR1643275 1 0.2814 0.804 0.868 0.000 0.000 0.132
#> SRR1643276 1 0.2814 0.804 0.868 0.000 0.000 0.132
#> SRR1643277 1 0.2814 0.804 0.868 0.000 0.000 0.132
#> SRR1643278 1 0.2814 0.804 0.868 0.000 0.000 0.132
#> SRR1643279 1 0.2814 0.804 0.868 0.000 0.000 0.132
#> SRR1643280 1 0.2814 0.804 0.868 0.000 0.000 0.132
#> SRR1643281 1 0.2814 0.804 0.868 0.000 0.000 0.132
#> SRR1643282 1 0.2814 0.804 0.868 0.000 0.000 0.132
#> SRR1643283 1 0.2814 0.804 0.868 0.000 0.000 0.132
#> SRR1643284 1 0.2814 0.804 0.868 0.000 0.000 0.132
#> SRR1643285 1 0.2814 0.804 0.868 0.000 0.000 0.132
#> SRR1643286 1 0.2814 0.804 0.868 0.000 0.000 0.132
#> SRR1643287 1 0.3726 0.656 0.788 0.000 0.000 0.212
#> SRR1643288 1 0.3726 0.656 0.788 0.000 0.000 0.212
#> SRR1643289 1 0.3726 0.656 0.788 0.000 0.000 0.212
#> SRR1643290 1 0.3726 0.656 0.788 0.000 0.000 0.212
#> SRR1643291 1 0.3726 0.656 0.788 0.000 0.000 0.212
#> SRR1643292 1 0.3726 0.656 0.788 0.000 0.000 0.212
#> SRR1643293 1 0.3726 0.656 0.788 0.000 0.000 0.212
#> SRR1643294 1 0.3726 0.656 0.788 0.000 0.000 0.212
#> SRR1643295 1 0.3726 0.656 0.788 0.000 0.000 0.212
#> SRR1643296 1 0.3726 0.656 0.788 0.000 0.000 0.212
#> SRR1643297 1 0.3726 0.656 0.788 0.000 0.000 0.212
#> SRR1643298 1 0.3726 0.656 0.788 0.000 0.000 0.212
#> SRR1643299 1 0.3726 0.656 0.788 0.000 0.000 0.212
#> SRR1643300 1 0.3726 0.656 0.788 0.000 0.000 0.212
#> SRR1643301 1 0.0707 0.897 0.980 0.000 0.000 0.020
#> SRR1643302 1 0.0707 0.897 0.980 0.000 0.000 0.020
#> SRR1643303 1 0.0707 0.897 0.980 0.000 0.000 0.020
#> SRR1643304 1 0.0707 0.897 0.980 0.000 0.000 0.020
#> SRR1643305 1 0.0707 0.897 0.980 0.000 0.000 0.020
#> SRR1643306 1 0.0707 0.897 0.980 0.000 0.000 0.020
#> SRR1643307 1 0.0707 0.897 0.980 0.000 0.000 0.020
#> SRR1643308 1 0.0707 0.897 0.980 0.000 0.000 0.020
#> SRR1643309 1 0.0707 0.897 0.980 0.000 0.000 0.020
#> SRR1643310 1 0.0707 0.897 0.980 0.000 0.000 0.020
#> SRR1643311 1 0.0707 0.897 0.980 0.000 0.000 0.020
#> SRR1643312 1 0.0707 0.897 0.980 0.000 0.000 0.020
#> SRR1643313 1 0.0707 0.897 0.980 0.000 0.000 0.020
#> SRR1643314 1 0.0188 0.903 0.996 0.000 0.000 0.004
#> SRR1643315 1 0.0188 0.903 0.996 0.000 0.000 0.004
#> SRR1643316 1 0.0188 0.903 0.996 0.000 0.000 0.004
#> SRR1643317 1 0.0188 0.903 0.996 0.000 0.000 0.004
#> SRR1643318 1 0.0188 0.903 0.996 0.000 0.000 0.004
#> SRR1643319 1 0.0000 0.902 1.000 0.000 0.000 0.000
#> SRR1643320 1 0.0188 0.903 0.996 0.000 0.000 0.004
#> SRR1643321 1 0.0188 0.903 0.996 0.000 0.000 0.004
#> SRR1643322 1 0.0188 0.903 0.996 0.000 0.000 0.004
#> SRR1643323 1 0.0188 0.903 0.996 0.000 0.000 0.004
#> SRR1643324 1 0.0188 0.903 0.996 0.000 0.000 0.004
#> SRR1643325 1 0.0188 0.903 0.996 0.000 0.000 0.004
#> SRR1643326 1 0.0188 0.903 0.996 0.000 0.000 0.004
#> SRR1643327 1 0.0188 0.903 0.996 0.000 0.000 0.004
#> SRR1643328 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643329 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643330 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643331 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643332 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643333 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643334 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643335 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643336 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643337 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643338 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643339 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643340 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643341 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643342 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643343 1 0.2675 0.846 0.892 0.000 0.008 0.100
#> SRR1643344 1 0.2675 0.846 0.892 0.000 0.008 0.100
#> SRR1643345 1 0.2675 0.846 0.892 0.000 0.008 0.100
#> SRR1643346 1 0.2675 0.846 0.892 0.000 0.008 0.100
#> SRR1643347 1 0.2675 0.846 0.892 0.000 0.008 0.100
#> SRR1643348 1 0.2675 0.846 0.892 0.000 0.008 0.100
#> SRR1643349 1 0.2675 0.846 0.892 0.000 0.008 0.100
#> SRR1643350 1 0.2675 0.846 0.892 0.000 0.008 0.100
#> SRR1643351 1 0.2675 0.846 0.892 0.000 0.008 0.100
#> SRR1643352 1 0.2675 0.846 0.892 0.000 0.008 0.100
#> SRR1643353 1 0.2675 0.846 0.892 0.000 0.008 0.100
#> SRR1643354 1 0.2675 0.846 0.892 0.000 0.008 0.100
#> SRR1643355 1 0.2675 0.846 0.892 0.000 0.008 0.100
#> SRR1643356 1 0.2675 0.846 0.892 0.000 0.008 0.100
#> SRR1643357 1 0.2675 0.846 0.892 0.000 0.008 0.100
#> SRR1643358 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643359 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643360 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643361 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643362 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643363 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643364 4 0.4730 0.781 0.364 0.000 0.000 0.636
#> SRR1643365 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643366 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643367 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643368 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643369 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643370 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643371 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643372 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643373 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643374 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643375 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643376 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643377 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643378 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643379 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643380 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643381 4 0.4008 0.798 0.244 0.000 0.000 0.756
#> SRR1643382 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643383 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643384 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643385 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643386 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643387 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643388 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643389 4 0.4977 0.758 0.460 0.000 0.000 0.540
#> SRR1643390 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643391 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643392 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643393 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643394 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643395 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643396 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643397 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643398 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643399 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643400 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643401 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643402 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643403 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643404 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643405 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643406 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643407 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643408 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643409 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643410 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643411 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643412 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643413 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643414 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643415 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643416 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643417 1 0.0336 0.903 0.992 0.000 0.008 0.000
#> SRR1643418 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643419 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643420 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643421 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643422 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643423 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643424 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643425 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643426 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643427 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643428 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643429 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643430 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643431 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643432 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643433 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643434 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643435 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643436 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643437 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643438 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643439 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643440 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643441 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643442 4 0.3907 0.799 0.232 0.000 0.000 0.768
#> SRR1643443 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643444 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643445 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643446 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643447 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643448 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643449 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643450 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643451 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643452 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643453 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643454 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643455 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643456 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643457 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643458 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643459 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643460 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643461 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643462 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643463 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643464 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643466 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643467 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643468 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643469 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643470 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643471 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643472 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643473 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643474 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643475 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643477 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643478 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643479 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643480 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643481 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643482 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643483 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643484 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643485 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643486 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643487 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643488 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643489 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643490 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643491 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643492 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643493 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643494 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643495 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643496 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643497 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643498 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643499 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643500 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643501 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643502 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643503 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643504 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643505 2 0.3907 0.761 0.000 0.768 0.000 0.232
#> SRR1643506 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643507 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643508 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643509 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643510 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643511 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643512 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643513 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643531 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643532 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643533 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643534 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643535 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643536 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643537 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643538 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643539 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643540 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643541 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643542 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643543 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643544 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643514 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643515 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643516 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643517 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643518 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643519 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643520 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643521 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643522 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643523 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643524 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643525 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643526 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643527 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643528 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643529 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643530 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643545 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643546 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643547 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643548 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643549 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643550 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643551 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643552 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643553 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643554 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643555 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643556 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643558 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643559 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643560 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643561 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643562 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643563 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643564 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643565 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643566 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643567 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643568 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643569 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643570 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643571 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643572 2 0.0000 0.998 0.000 1.000 0.000 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643168 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643169 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643170 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643171 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643172 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643173 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643174 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643175 1 0.0290 0.868 0.992 0.000 0.00 0.008 0.000
#> SRR1643176 1 0.0290 0.868 0.992 0.000 0.00 0.008 0.000
#> SRR1643177 1 0.0290 0.868 0.992 0.000 0.00 0.008 0.000
#> SRR1643178 1 0.0290 0.868 0.992 0.000 0.00 0.008 0.000
#> SRR1643180 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643181 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643182 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643183 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643184 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643185 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643186 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643187 1 0.0963 0.868 0.964 0.000 0.00 0.036 0.000
#> SRR1643188 1 0.0963 0.868 0.964 0.000 0.00 0.036 0.000
#> SRR1643189 1 0.0963 0.868 0.964 0.000 0.00 0.036 0.000
#> SRR1643190 1 0.0963 0.868 0.964 0.000 0.00 0.036 0.000
#> SRR1643191 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643192 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643193 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643194 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643195 1 0.1478 0.859 0.936 0.000 0.00 0.064 0.000
#> SRR1643196 1 0.1478 0.859 0.936 0.000 0.00 0.064 0.000
#> SRR1643197 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643198 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643199 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643200 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643201 1 0.0880 0.867 0.968 0.000 0.00 0.032 0.000
#> SRR1643202 1 0.0880 0.867 0.968 0.000 0.00 0.032 0.000
#> SRR1643203 1 0.0963 0.868 0.964 0.000 0.00 0.036 0.000
#> SRR1643204 1 0.0963 0.868 0.964 0.000 0.00 0.036 0.000
#> SRR1643205 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643206 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643207 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643208 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643209 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643210 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643211 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643212 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643213 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643214 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643215 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643216 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643217 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643218 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643219 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643220 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643221 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643222 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643223 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643224 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643225 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643226 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643227 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643228 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643229 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643230 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643231 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643232 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643233 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643234 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643235 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643236 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643237 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643238 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643239 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643240 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643241 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643242 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643243 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643245 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643246 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643247 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643248 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643249 3 0.0609 0.960 0.020 0.000 0.98 0.000 0.000
#> SRR1643250 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643251 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643252 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643253 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643254 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643255 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643256 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643257 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643258 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643259 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643260 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643261 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643262 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643263 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643264 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643266 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643267 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643268 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643269 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643270 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643271 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643272 1 0.3336 0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643273 1 0.3876 0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643274 1 0.3876 0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643275 1 0.3876 0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643276 1 0.3876 0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643277 1 0.3876 0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643278 1 0.3876 0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643279 1 0.3876 0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643280 1 0.3876 0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643281 1 0.3876 0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643282 1 0.3876 0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643283 1 0.3876 0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643284 1 0.3876 0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643285 1 0.3876 0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643286 1 0.3876 0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643287 1 0.4201 0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643288 1 0.4201 0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643289 1 0.4201 0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643290 1 0.4201 0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643291 1 0.4201 0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643292 1 0.4201 0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643293 1 0.4201 0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643294 1 0.4201 0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643295 1 0.4201 0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643296 1 0.4201 0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643297 1 0.4201 0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643298 1 0.4201 0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643299 1 0.4201 0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643300 1 0.4201 0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643301 1 0.1410 0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643302 1 0.1410 0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643303 1 0.1410 0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643304 1 0.1410 0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643305 1 0.1410 0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643306 1 0.1410 0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643307 1 0.1410 0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643308 1 0.1410 0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643309 1 0.1410 0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643310 1 0.1410 0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643311 1 0.1410 0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643312 1 0.1410 0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643313 1 0.1410 0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643314 1 0.0963 0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643315 1 0.0963 0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643316 1 0.0963 0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643317 1 0.0963 0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643318 1 0.0963 0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643319 1 0.0880 0.867 0.968 0.000 0.00 0.032 0.000
#> SRR1643320 1 0.0963 0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643321 1 0.0963 0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643322 1 0.0963 0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643323 1 0.0963 0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643324 1 0.0963 0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643325 1 0.0963 0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643326 1 0.0963 0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643327 1 0.0963 0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643328 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643329 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643330 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643331 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643332 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643333 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643334 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643335 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643336 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643337 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643338 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643339 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643340 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643341 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643342 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643343 1 0.2230 0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643344 1 0.2230 0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643345 1 0.2230 0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643346 1 0.2230 0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643347 1 0.2230 0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643348 1 0.2230 0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643349 1 0.2230 0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643350 1 0.2230 0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643351 1 0.2230 0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643352 1 0.2230 0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643353 1 0.2230 0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643354 1 0.2230 0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643355 1 0.2230 0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643356 1 0.2230 0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643357 1 0.2230 0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643358 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643359 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643360 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643361 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643362 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643363 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643364 4 0.2516 0.762 0.140 0.000 0.00 0.860 0.000
#> SRR1643365 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643366 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643367 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643368 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643369 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643370 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643371 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643372 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643373 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643374 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643375 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643376 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643377 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643378 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643379 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643380 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643381 4 0.0162 0.715 0.004 0.000 0.00 0.996 0.000
#> SRR1643382 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643383 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643384 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643385 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643386 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643387 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643388 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643389 4 0.3452 0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643390 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643391 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643392 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643393 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643394 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643395 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643396 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643397 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643398 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643399 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643400 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643401 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643402 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643403 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643404 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643405 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643406 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643407 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643408 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643409 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643410 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643411 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643412 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643413 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643414 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643415 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643416 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643417 1 0.0000 0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643418 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643419 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643420 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643421 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643422 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643423 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643424 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643425 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643426 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643427 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643428 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643429 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643430 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643431 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643432 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643433 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643434 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643435 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643436 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643437 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643438 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643439 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643440 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643441 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643442 4 0.0290 0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643443 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643505 5 0.0290 0.000 0.000 0.008 0.00 0.000 0.992
#> SRR1643506 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1.000 0.00 0.000 0.000
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 1 0.0260 0.813 0.992 0.000 0.00 0.000 0.008 0.000
#> SRR1643168 1 0.0260 0.813 0.992 0.000 0.00 0.000 0.008 0.000
#> SRR1643169 1 0.0260 0.813 0.992 0.000 0.00 0.000 0.008 0.000
#> SRR1643170 1 0.0260 0.813 0.992 0.000 0.00 0.000 0.008 0.000
#> SRR1643171 1 0.0146 0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643172 1 0.0146 0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643173 1 0.0146 0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643174 1 0.0146 0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643175 1 0.0865 0.800 0.964 0.000 0.00 0.000 0.036 0.000
#> SRR1643176 1 0.0865 0.800 0.964 0.000 0.00 0.000 0.036 0.000
#> SRR1643177 1 0.0865 0.800 0.964 0.000 0.00 0.000 0.036 0.000
#> SRR1643178 1 0.0865 0.800 0.964 0.000 0.00 0.000 0.036 0.000
#> SRR1643180 1 0.0146 0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643181 1 0.0146 0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643182 1 0.0146 0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643183 1 0.0146 0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643184 1 0.0146 0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643185 1 0.0146 0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643186 1 0.0146 0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643187 1 0.1572 0.796 0.936 0.000 0.00 0.028 0.036 0.000
#> SRR1643188 1 0.1572 0.796 0.936 0.000 0.00 0.028 0.036 0.000
#> SRR1643189 1 0.1572 0.796 0.936 0.000 0.00 0.028 0.036 0.000
#> SRR1643190 1 0.1572 0.796 0.936 0.000 0.00 0.028 0.036 0.000
#> SRR1643191 1 0.0146 0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643192 1 0.0146 0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643193 1 0.0260 0.813 0.992 0.000 0.00 0.000 0.008 0.000
#> SRR1643194 1 0.0260 0.813 0.992 0.000 0.00 0.000 0.008 0.000
#> SRR1643195 1 0.2201 0.773 0.900 0.000 0.00 0.052 0.048 0.000
#> SRR1643196 1 0.2201 0.773 0.900 0.000 0.00 0.052 0.048 0.000
#> SRR1643197 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643198 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643199 1 0.0146 0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643200 1 0.0146 0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643201 1 0.1049 0.807 0.960 0.000 0.00 0.032 0.008 0.000
#> SRR1643202 1 0.1049 0.807 0.960 0.000 0.00 0.032 0.008 0.000
#> SRR1643203 1 0.1572 0.796 0.936 0.000 0.00 0.028 0.036 0.000
#> SRR1643204 1 0.1572 0.796 0.936 0.000 0.00 0.028 0.036 0.000
#> SRR1643205 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643206 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643207 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643208 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643209 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643210 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643211 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643212 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643213 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643214 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643215 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643216 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643217 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643218 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643219 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643220 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643221 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643222 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643223 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643224 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643225 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643226 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643227 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643228 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643229 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643230 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643231 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643232 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643233 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643234 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643235 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643236 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643237 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643238 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643239 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643240 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643241 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643242 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643243 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643245 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643246 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643247 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643248 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643249 3 0.0603 0.965 0.016 0.000 0.98 0.000 0.004 0.000
#> SRR1643250 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643251 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643252 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643253 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643254 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643255 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643256 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643257 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643258 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643259 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643260 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643261 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643262 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643263 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643264 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643266 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643267 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643268 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643269 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643270 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643271 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643272 1 0.4858 0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643273 1 0.5870 -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643274 1 0.5870 -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643275 1 0.5870 -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643276 1 0.5870 -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643277 1 0.5870 -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643278 1 0.5870 -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643279 1 0.5870 -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643280 1 0.5870 -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643281 1 0.5870 -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643282 1 0.5870 -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643283 1 0.5870 -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643284 1 0.5870 -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643285 1 0.5870 -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643286 1 0.5870 -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643287 5 0.5240 0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643288 5 0.5240 0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643289 5 0.5240 0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643290 5 0.5240 0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643291 5 0.5240 0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643292 5 0.5240 0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643293 5 0.5240 0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643294 5 0.5240 0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643295 5 0.5240 0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643296 5 0.5240 0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643297 5 0.5240 0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643298 5 0.5240 0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643299 5 0.5240 0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643300 5 0.5240 0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643301 1 0.1845 0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643302 1 0.1845 0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643303 1 0.1845 0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643304 1 0.1845 0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643305 1 0.1845 0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643306 1 0.1845 0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643307 1 0.1845 0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643308 1 0.1845 0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643309 1 0.1845 0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643310 1 0.1845 0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643311 1 0.1845 0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643312 1 0.1845 0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643313 1 0.1845 0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643314 1 0.1334 0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643315 1 0.1334 0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643316 1 0.1334 0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643317 1 0.1334 0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643318 1 0.1334 0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643319 1 0.1049 0.806 0.960 0.000 0.00 0.032 0.008 0.000
#> SRR1643320 1 0.1334 0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643321 1 0.1334 0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643322 1 0.1334 0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643323 1 0.1334 0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643324 1 0.1334 0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643325 1 0.1334 0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643326 1 0.1334 0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643327 1 0.1334 0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643328 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643329 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643330 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643331 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643332 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643333 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643334 1 0.1663 0.715 0.912 0.000 0.00 0.000 0.088 0.000
#> SRR1643335 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643336 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643337 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643338 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643339 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643340 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643341 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643342 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643343 5 0.3817 0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643344 5 0.3817 0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643345 5 0.3817 0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643346 5 0.3817 0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643347 5 0.3817 0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643348 5 0.3817 0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643349 5 0.3817 0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643350 5 0.3817 0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643351 5 0.3817 0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643352 5 0.3817 0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643353 5 0.3817 0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643354 5 0.3817 0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643355 5 0.3817 0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643356 5 0.3817 0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643357 5 0.3817 0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643358 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643359 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643360 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643361 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643362 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643363 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643364 4 0.4219 0.611 0.036 0.000 0.00 0.660 0.304 0.000
#> SRR1643365 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643366 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643367 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643368 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643369 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643370 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643371 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643372 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643373 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643374 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643375 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643376 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643377 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643378 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643379 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643380 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643381 4 0.3050 0.604 0.000 0.000 0.00 0.764 0.236 0.000
#> SRR1643382 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643383 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643384 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643385 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643386 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643387 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643388 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643389 4 0.5304 0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643390 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643391 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643392 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643393 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643394 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643395 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643396 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643397 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643398 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643399 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643400 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643401 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643402 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643403 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643404 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643405 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643406 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643407 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643408 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643409 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643410 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643411 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643412 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643413 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643414 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643415 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643416 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643417 1 0.0000 0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643418 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643419 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643420 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643421 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643422 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643423 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643424 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643425 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643426 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643427 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643428 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643429 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643430 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643431 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643432 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643433 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643434 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643435 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643436 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643437 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643438 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643439 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643440 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643441 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643442 4 0.0000 0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643443 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643444 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643445 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643446 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643447 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643448 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643449 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643450 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643451 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643452 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643453 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643454 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643455 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643456 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643457 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643458 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643459 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643460 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643461 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643462 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643463 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643464 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643466 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643467 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643468 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643469 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643470 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643471 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643472 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643473 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643474 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643475 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643477 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643478 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643479 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643480 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643481 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643482 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643483 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643484 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643485 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643486 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643487 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643488 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643489 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643490 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643491 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643492 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643493 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643494 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643495 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643496 2 0.0458 0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643497 2 0.0260 0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643498 2 0.0260 0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643499 2 0.0260 0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643500 2 0.0260 0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643501 2 0.0260 0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643502 2 0.0260 0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643503 2 0.0260 0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643504 2 0.0260 0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643505 6 0.2664 0.000 0.000 0.000 0.00 0.000 0.184 0.816
#> SRR1643506 2 0.0260 0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643507 2 0.0260 0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643508 2 0.0260 0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643509 2 0.0260 0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643510 2 0.0260 0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643511 2 0.0260 0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643512 2 0.0260 0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643513 2 0.0260 0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643531 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643532 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643533 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643534 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643535 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643536 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643537 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643538 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643539 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643540 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643541 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643542 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643543 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643544 2 0.0937 0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643514 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643515 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643516 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643517 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643518 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643519 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643520 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643521 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643522 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643523 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643524 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643525 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643526 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643527 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643528 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643529 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643530 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643545 2 0.2300 0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643546 2 0.2300 0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643547 2 0.2300 0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643548 2 0.2300 0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643549 2 0.2300 0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643550 2 0.2300 0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643551 2 0.2300 0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643552 2 0.2300 0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643553 2 0.2300 0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643554 2 0.2300 0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643555 2 0.2300 0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643556 2 0.2300 0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643558 2 0.2300 0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643559 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643560 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643561 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643562 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643563 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643564 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643565 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643566 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643567 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643568 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643569 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643570 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643571 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643572 2 0.1765 0.929 0.000 0.904 0.00 0.000 0.000 0.096
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["CV", "kmeans"]
# you can also extract it by
# res = res_list["CV:kmeans"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'CV' method.
#> Subgroups are detected by 'kmeans' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 2.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.4350 0.566 0.566
#> 3 3 0.634 0.695 0.832 0.3386 0.874 0.777
#> 4 4 0.538 0.629 0.695 0.1574 1.000 1.000
#> 5 5 0.584 0.578 0.747 0.0752 0.818 0.585
#> 6 6 0.601 0.563 0.719 0.0564 0.980 0.924
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 2
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.6168 0.1707 0.588 0.000 0.412
#> SRR1643168 1 0.6168 0.1707 0.588 0.000 0.412
#> SRR1643169 1 0.6168 0.1707 0.588 0.000 0.412
#> SRR1643170 1 0.6168 0.1707 0.588 0.000 0.412
#> SRR1643171 1 0.6225 0.0929 0.568 0.000 0.432
#> SRR1643172 1 0.6225 0.0929 0.568 0.000 0.432
#> SRR1643173 1 0.6225 0.0929 0.568 0.000 0.432
#> SRR1643174 1 0.6225 0.0929 0.568 0.000 0.432
#> SRR1643175 1 0.4842 0.5702 0.776 0.000 0.224
#> SRR1643176 1 0.4842 0.5702 0.776 0.000 0.224
#> SRR1643177 1 0.4842 0.5702 0.776 0.000 0.224
#> SRR1643178 1 0.4842 0.5702 0.776 0.000 0.224
#> SRR1643180 1 0.6215 0.1104 0.572 0.000 0.428
#> SRR1643181 1 0.6215 0.1104 0.572 0.000 0.428
#> SRR1643182 1 0.6215 0.1104 0.572 0.000 0.428
#> SRR1643183 1 0.6215 0.1104 0.572 0.000 0.428
#> SRR1643184 1 0.6215 0.1104 0.572 0.000 0.428
#> SRR1643185 1 0.6215 0.1104 0.572 0.000 0.428
#> SRR1643186 1 0.6215 0.1104 0.572 0.000 0.428
#> SRR1643187 1 0.4702 0.5865 0.788 0.000 0.212
#> SRR1643188 1 0.4702 0.5865 0.788 0.000 0.212
#> SRR1643189 1 0.4702 0.5865 0.788 0.000 0.212
#> SRR1643190 1 0.4702 0.5865 0.788 0.000 0.212
#> SRR1643191 1 0.6204 0.1289 0.576 0.000 0.424
#> SRR1643192 1 0.6204 0.1289 0.576 0.000 0.424
#> SRR1643193 1 0.4605 0.5907 0.796 0.000 0.204
#> SRR1643194 1 0.4654 0.5870 0.792 0.000 0.208
#> SRR1643195 1 0.0424 0.7081 0.992 0.000 0.008
#> SRR1643196 1 0.0424 0.7081 0.992 0.000 0.008
#> SRR1643197 1 0.6192 0.1447 0.580 0.000 0.420
#> SRR1643198 1 0.6192 0.1447 0.580 0.000 0.420
#> SRR1643199 1 0.6168 0.1707 0.588 0.000 0.412
#> SRR1643200 1 0.6168 0.1707 0.588 0.000 0.412
#> SRR1643201 1 0.0424 0.7081 0.992 0.000 0.008
#> SRR1643202 1 0.0424 0.7081 0.992 0.000 0.008
#> SRR1643203 1 0.5678 0.4248 0.684 0.000 0.316
#> SRR1643204 1 0.5678 0.4248 0.684 0.000 0.316
#> SRR1643205 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643206 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643207 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643208 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643209 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643210 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643211 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643212 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643213 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643214 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643215 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643216 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643217 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643218 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643219 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643220 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643221 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643222 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643223 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643224 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643225 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643226 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643227 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643228 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643229 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643230 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643231 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643232 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643233 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643234 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643235 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643236 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643237 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643238 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643239 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643240 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643241 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643242 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643243 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643245 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643246 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643247 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643248 3 0.5591 0.9983 0.304 0.000 0.696
#> SRR1643249 3 0.5810 0.9225 0.336 0.000 0.664
#> SRR1643250 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643251 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643252 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643253 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643254 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643255 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643256 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643257 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643258 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643259 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643260 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643261 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643262 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643263 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643264 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643266 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643267 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643268 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643269 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643270 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643271 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643272 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643273 1 0.1964 0.6978 0.944 0.000 0.056
#> SRR1643274 1 0.1964 0.6978 0.944 0.000 0.056
#> SRR1643275 1 0.1964 0.6978 0.944 0.000 0.056
#> SRR1643276 1 0.1964 0.6978 0.944 0.000 0.056
#> SRR1643277 1 0.1964 0.6978 0.944 0.000 0.056
#> SRR1643278 1 0.1964 0.6978 0.944 0.000 0.056
#> SRR1643279 1 0.1964 0.6978 0.944 0.000 0.056
#> SRR1643280 1 0.1964 0.6978 0.944 0.000 0.056
#> SRR1643281 1 0.1964 0.6978 0.944 0.000 0.056
#> SRR1643282 1 0.1964 0.6978 0.944 0.000 0.056
#> SRR1643283 1 0.1964 0.6978 0.944 0.000 0.056
#> SRR1643284 1 0.1964 0.6978 0.944 0.000 0.056
#> SRR1643285 1 0.1964 0.6978 0.944 0.000 0.056
#> SRR1643286 1 0.1964 0.6978 0.944 0.000 0.056
#> SRR1643287 1 0.1031 0.6996 0.976 0.000 0.024
#> SRR1643288 1 0.1031 0.6996 0.976 0.000 0.024
#> SRR1643289 1 0.1031 0.6996 0.976 0.000 0.024
#> SRR1643290 1 0.1031 0.6996 0.976 0.000 0.024
#> SRR1643291 1 0.1031 0.6996 0.976 0.000 0.024
#> SRR1643292 1 0.1031 0.6996 0.976 0.000 0.024
#> SRR1643293 1 0.1031 0.6996 0.976 0.000 0.024
#> SRR1643294 1 0.1031 0.6996 0.976 0.000 0.024
#> SRR1643295 1 0.1031 0.6996 0.976 0.000 0.024
#> SRR1643296 1 0.1031 0.6996 0.976 0.000 0.024
#> SRR1643297 1 0.1031 0.6996 0.976 0.000 0.024
#> SRR1643298 1 0.1031 0.6996 0.976 0.000 0.024
#> SRR1643299 1 0.1031 0.6996 0.976 0.000 0.024
#> SRR1643300 1 0.1031 0.6996 0.976 0.000 0.024
#> SRR1643301 1 0.0592 0.7101 0.988 0.000 0.012
#> SRR1643302 1 0.0592 0.7101 0.988 0.000 0.012
#> SRR1643303 1 0.0592 0.7101 0.988 0.000 0.012
#> SRR1643304 1 0.0592 0.7101 0.988 0.000 0.012
#> SRR1643305 1 0.0592 0.7101 0.988 0.000 0.012
#> SRR1643306 1 0.0592 0.7101 0.988 0.000 0.012
#> SRR1643307 1 0.0592 0.7101 0.988 0.000 0.012
#> SRR1643308 1 0.0592 0.7101 0.988 0.000 0.012
#> SRR1643309 1 0.0592 0.7101 0.988 0.000 0.012
#> SRR1643310 1 0.0592 0.7101 0.988 0.000 0.012
#> SRR1643311 1 0.0592 0.7101 0.988 0.000 0.012
#> SRR1643312 1 0.0592 0.7101 0.988 0.000 0.012
#> SRR1643313 1 0.0592 0.7101 0.988 0.000 0.012
#> SRR1643314 1 0.5058 0.5365 0.756 0.000 0.244
#> SRR1643315 1 0.4796 0.5683 0.780 0.000 0.220
#> SRR1643316 1 0.4796 0.5683 0.780 0.000 0.220
#> SRR1643317 1 0.4796 0.5683 0.780 0.000 0.220
#> SRR1643318 1 0.4796 0.5683 0.780 0.000 0.220
#> SRR1643319 1 0.4702 0.5767 0.788 0.000 0.212
#> SRR1643320 1 0.4796 0.5683 0.780 0.000 0.220
#> SRR1643321 1 0.4796 0.5683 0.780 0.000 0.220
#> SRR1643322 1 0.4796 0.5683 0.780 0.000 0.220
#> SRR1643323 1 0.4796 0.5683 0.780 0.000 0.220
#> SRR1643324 1 0.4750 0.5724 0.784 0.000 0.216
#> SRR1643325 1 0.4796 0.5683 0.780 0.000 0.220
#> SRR1643326 1 0.4796 0.5683 0.780 0.000 0.220
#> SRR1643327 1 0.4796 0.5683 0.780 0.000 0.220
#> SRR1643328 1 0.6225 0.0726 0.568 0.000 0.432
#> SRR1643329 1 0.6225 0.0726 0.568 0.000 0.432
#> SRR1643330 1 0.6225 0.0726 0.568 0.000 0.432
#> SRR1643331 1 0.6225 0.0726 0.568 0.000 0.432
#> SRR1643332 1 0.6225 0.0726 0.568 0.000 0.432
#> SRR1643333 1 0.6225 0.0726 0.568 0.000 0.432
#> SRR1643334 1 0.6204 0.1091 0.576 0.000 0.424
#> SRR1643335 1 0.6225 0.0726 0.568 0.000 0.432
#> SRR1643336 1 0.6225 0.0726 0.568 0.000 0.432
#> SRR1643337 1 0.6225 0.0726 0.568 0.000 0.432
#> SRR1643338 1 0.6225 0.0726 0.568 0.000 0.432
#> SRR1643339 1 0.6225 0.0726 0.568 0.000 0.432
#> SRR1643340 1 0.6225 0.0726 0.568 0.000 0.432
#> SRR1643341 1 0.6225 0.0726 0.568 0.000 0.432
#> SRR1643342 1 0.6225 0.0726 0.568 0.000 0.432
#> SRR1643343 1 0.5650 0.4468 0.688 0.000 0.312
#> SRR1643344 1 0.5650 0.4468 0.688 0.000 0.312
#> SRR1643345 1 0.5650 0.4468 0.688 0.000 0.312
#> SRR1643346 1 0.5650 0.4468 0.688 0.000 0.312
#> SRR1643347 1 0.5650 0.4468 0.688 0.000 0.312
#> SRR1643348 1 0.5650 0.4468 0.688 0.000 0.312
#> SRR1643349 1 0.5650 0.4468 0.688 0.000 0.312
#> SRR1643350 1 0.5650 0.4468 0.688 0.000 0.312
#> SRR1643351 1 0.5650 0.4468 0.688 0.000 0.312
#> SRR1643352 1 0.5650 0.4468 0.688 0.000 0.312
#> SRR1643353 1 0.5650 0.4468 0.688 0.000 0.312
#> SRR1643354 1 0.5650 0.4468 0.688 0.000 0.312
#> SRR1643355 1 0.5650 0.4468 0.688 0.000 0.312
#> SRR1643356 1 0.5650 0.4468 0.688 0.000 0.312
#> SRR1643357 1 0.5650 0.4468 0.688 0.000 0.312
#> SRR1643358 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643359 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643360 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643361 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643362 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643363 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643364 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643365 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643366 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643367 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643368 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643369 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643370 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643371 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643372 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643373 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643374 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643375 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643376 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643377 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643378 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643379 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643380 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643381 1 0.0424 0.7068 0.992 0.000 0.008
#> SRR1643382 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643383 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643384 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643385 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643386 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643387 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643388 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643389 1 0.0000 0.7110 1.000 0.000 0.000
#> SRR1643390 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643391 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643392 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643393 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643394 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643395 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643396 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643397 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643398 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643399 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643400 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643401 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643402 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643403 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643404 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643405 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643406 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643407 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643408 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643409 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643410 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643411 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643412 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643413 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643414 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643415 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643416 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643417 1 0.6204 0.1263 0.576 0.000 0.424
#> SRR1643418 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643419 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643420 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643421 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643422 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643423 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643424 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643425 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643426 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643427 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643428 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643429 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643430 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643431 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643432 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643433 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643434 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643435 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643436 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643437 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643438 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643439 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643440 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643441 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643442 1 0.1289 0.6904 0.968 0.000 0.032
#> SRR1643443 2 0.4842 0.9133 0.000 0.776 0.224
#> SRR1643444 2 0.4842 0.9133 0.000 0.776 0.224
#> SRR1643445 2 0.4842 0.9133 0.000 0.776 0.224
#> SRR1643446 2 0.4842 0.9133 0.000 0.776 0.224
#> SRR1643447 2 0.4842 0.9133 0.000 0.776 0.224
#> SRR1643448 2 0.4842 0.9133 0.000 0.776 0.224
#> SRR1643449 2 0.4842 0.9133 0.000 0.776 0.224
#> SRR1643450 2 0.4842 0.9133 0.000 0.776 0.224
#> SRR1643451 2 0.4842 0.9133 0.000 0.776 0.224
#> SRR1643452 2 0.4842 0.9133 0.000 0.776 0.224
#> SRR1643453 2 0.4842 0.9133 0.000 0.776 0.224
#> SRR1643454 2 0.4842 0.9133 0.000 0.776 0.224
#> SRR1643455 2 0.4842 0.9133 0.000 0.776 0.224
#> SRR1643456 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643457 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643458 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643459 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643460 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643461 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643462 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643463 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643464 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643466 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643467 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643468 2 0.0424 0.9343 0.000 0.992 0.008
#> SRR1643469 2 0.0424 0.9343 0.000 0.992 0.008
#> SRR1643470 2 0.0424 0.9343 0.000 0.992 0.008
#> SRR1643471 2 0.0424 0.9343 0.000 0.992 0.008
#> SRR1643472 2 0.0424 0.9343 0.000 0.992 0.008
#> SRR1643473 2 0.0424 0.9343 0.000 0.992 0.008
#> SRR1643474 2 0.0424 0.9343 0.000 0.992 0.008
#> SRR1643475 2 0.0424 0.9343 0.000 0.992 0.008
#> SRR1643477 2 0.0424 0.9343 0.000 0.992 0.008
#> SRR1643478 2 0.0424 0.9343 0.000 0.992 0.008
#> SRR1643479 2 0.0424 0.9343 0.000 0.992 0.008
#> SRR1643480 2 0.0424 0.9343 0.000 0.992 0.008
#> SRR1643481 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643482 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643483 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643484 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643485 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643486 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643487 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643488 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643489 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643490 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643491 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643492 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643493 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643494 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643495 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643496 2 0.0000 0.9360 0.000 1.000 0.000
#> SRR1643497 2 0.2878 0.9284 0.000 0.904 0.096
#> SRR1643498 2 0.2878 0.9284 0.000 0.904 0.096
#> SRR1643499 2 0.2878 0.9284 0.000 0.904 0.096
#> SRR1643500 2 0.2878 0.9284 0.000 0.904 0.096
#> SRR1643501 2 0.2878 0.9284 0.000 0.904 0.096
#> SRR1643502 2 0.2878 0.9284 0.000 0.904 0.096
#> SRR1643503 2 0.2878 0.9284 0.000 0.904 0.096
#> SRR1643504 2 0.2878 0.9284 0.000 0.904 0.096
#> SRR1643505 2 0.4235 0.9292 0.000 0.824 0.176
#> SRR1643506 2 0.2878 0.9284 0.000 0.904 0.096
#> SRR1643507 2 0.2878 0.9284 0.000 0.904 0.096
#> SRR1643508 2 0.2878 0.9284 0.000 0.904 0.096
#> SRR1643509 2 0.2878 0.9284 0.000 0.904 0.096
#> SRR1643510 2 0.2878 0.9284 0.000 0.904 0.096
#> SRR1643511 2 0.2878 0.9284 0.000 0.904 0.096
#> SRR1643512 2 0.2878 0.9284 0.000 0.904 0.096
#> SRR1643513 2 0.2878 0.9284 0.000 0.904 0.096
#> SRR1643531 2 0.4555 0.9204 0.000 0.800 0.200
#> SRR1643532 2 0.4555 0.9204 0.000 0.800 0.200
#> SRR1643533 2 0.4555 0.9204 0.000 0.800 0.200
#> SRR1643534 2 0.4555 0.9204 0.000 0.800 0.200
#> SRR1643535 2 0.4555 0.9204 0.000 0.800 0.200
#> SRR1643536 2 0.4555 0.9204 0.000 0.800 0.200
#> SRR1643537 2 0.4555 0.9204 0.000 0.800 0.200
#> SRR1643538 2 0.4555 0.9204 0.000 0.800 0.200
#> SRR1643539 2 0.4555 0.9204 0.000 0.800 0.200
#> SRR1643540 2 0.4555 0.9204 0.000 0.800 0.200
#> SRR1643541 2 0.4555 0.9204 0.000 0.800 0.200
#> SRR1643542 2 0.4555 0.9204 0.000 0.800 0.200
#> SRR1643543 2 0.4555 0.9204 0.000 0.800 0.200
#> SRR1643544 2 0.4555 0.9204 0.000 0.800 0.200
#> SRR1643514 2 0.3551 0.9333 0.000 0.868 0.132
#> SRR1643515 2 0.3551 0.9333 0.000 0.868 0.132
#> SRR1643516 2 0.3551 0.9333 0.000 0.868 0.132
#> SRR1643517 2 0.3551 0.9333 0.000 0.868 0.132
#> SRR1643518 2 0.3551 0.9333 0.000 0.868 0.132
#> SRR1643519 2 0.3551 0.9333 0.000 0.868 0.132
#> SRR1643520 2 0.3551 0.9333 0.000 0.868 0.132
#> SRR1643521 2 0.3551 0.9333 0.000 0.868 0.132
#> SRR1643522 2 0.3551 0.9333 0.000 0.868 0.132
#> SRR1643523 2 0.3551 0.9333 0.000 0.868 0.132
#> SRR1643524 2 0.3551 0.9333 0.000 0.868 0.132
#> SRR1643525 2 0.3551 0.9333 0.000 0.868 0.132
#> SRR1643526 2 0.3551 0.9333 0.000 0.868 0.132
#> SRR1643527 2 0.3551 0.9333 0.000 0.868 0.132
#> SRR1643528 2 0.3551 0.9333 0.000 0.868 0.132
#> SRR1643529 2 0.3551 0.9333 0.000 0.868 0.132
#> SRR1643530 2 0.3551 0.9333 0.000 0.868 0.132
#> SRR1643545 2 0.0424 0.9370 0.000 0.992 0.008
#> SRR1643546 2 0.0424 0.9370 0.000 0.992 0.008
#> SRR1643547 2 0.0424 0.9370 0.000 0.992 0.008
#> SRR1643548 2 0.0424 0.9370 0.000 0.992 0.008
#> SRR1643549 2 0.0424 0.9370 0.000 0.992 0.008
#> SRR1643550 2 0.0424 0.9370 0.000 0.992 0.008
#> SRR1643551 2 0.0424 0.9370 0.000 0.992 0.008
#> SRR1643552 2 0.0424 0.9370 0.000 0.992 0.008
#> SRR1643553 2 0.0424 0.9370 0.000 0.992 0.008
#> SRR1643554 2 0.0424 0.9370 0.000 0.992 0.008
#> SRR1643555 2 0.0424 0.9370 0.000 0.992 0.008
#> SRR1643556 2 0.0424 0.9370 0.000 0.992 0.008
#> SRR1643558 2 0.0424 0.9370 0.000 0.992 0.008
#> SRR1643559 2 0.4062 0.9295 0.000 0.836 0.164
#> SRR1643560 2 0.4062 0.9295 0.000 0.836 0.164
#> SRR1643561 2 0.4062 0.9295 0.000 0.836 0.164
#> SRR1643562 2 0.4062 0.9295 0.000 0.836 0.164
#> SRR1643563 2 0.4062 0.9295 0.000 0.836 0.164
#> SRR1643564 2 0.4062 0.9295 0.000 0.836 0.164
#> SRR1643565 2 0.4062 0.9295 0.000 0.836 0.164
#> SRR1643566 2 0.4062 0.9295 0.000 0.836 0.164
#> SRR1643567 2 0.4062 0.9295 0.000 0.836 0.164
#> SRR1643568 2 0.4062 0.9295 0.000 0.836 0.164
#> SRR1643569 2 0.4062 0.9295 0.000 0.836 0.164
#> SRR1643570 2 0.4062 0.9295 0.000 0.836 0.164
#> SRR1643571 2 0.4062 0.9295 0.000 0.836 0.164
#> SRR1643572 2 0.4062 0.9295 0.000 0.836 0.164
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.7609 0.256 0.464 0.000 0.312 NA
#> SRR1643168 1 0.7609 0.256 0.464 0.000 0.312 NA
#> SRR1643169 1 0.7609 0.256 0.464 0.000 0.312 NA
#> SRR1643170 1 0.7609 0.256 0.464 0.000 0.312 NA
#> SRR1643171 1 0.7674 0.217 0.436 0.000 0.340 NA
#> SRR1643172 1 0.7674 0.217 0.436 0.000 0.340 NA
#> SRR1643173 1 0.7674 0.217 0.436 0.000 0.340 NA
#> SRR1643174 1 0.7674 0.217 0.436 0.000 0.340 NA
#> SRR1643175 1 0.6500 0.430 0.620 0.000 0.120 NA
#> SRR1643176 1 0.6500 0.430 0.620 0.000 0.120 NA
#> SRR1643177 1 0.6500 0.430 0.620 0.000 0.120 NA
#> SRR1643178 1 0.6500 0.430 0.620 0.000 0.120 NA
#> SRR1643180 1 0.7659 0.226 0.444 0.000 0.332 NA
#> SRR1643181 1 0.7659 0.226 0.444 0.000 0.332 NA
#> SRR1643182 1 0.7659 0.226 0.444 0.000 0.332 NA
#> SRR1643183 1 0.7659 0.226 0.444 0.000 0.332 NA
#> SRR1643184 1 0.7659 0.226 0.444 0.000 0.332 NA
#> SRR1643185 1 0.7659 0.226 0.444 0.000 0.332 NA
#> SRR1643186 1 0.7659 0.226 0.444 0.000 0.332 NA
#> SRR1643187 1 0.6549 0.428 0.612 0.000 0.120 NA
#> SRR1643188 1 0.6549 0.428 0.612 0.000 0.120 NA
#> SRR1643189 1 0.6549 0.428 0.612 0.000 0.120 NA
#> SRR1643190 1 0.6549 0.428 0.612 0.000 0.120 NA
#> SRR1643191 1 0.7659 0.226 0.444 0.000 0.332 NA
#> SRR1643192 1 0.7659 0.226 0.444 0.000 0.332 NA
#> SRR1643193 1 0.6560 0.428 0.620 0.000 0.132 NA
#> SRR1643194 1 0.6560 0.428 0.620 0.000 0.132 NA
#> SRR1643195 1 0.3257 0.548 0.844 0.000 0.004 NA
#> SRR1643196 1 0.3257 0.548 0.844 0.000 0.004 NA
#> SRR1643197 1 0.7631 0.241 0.456 0.000 0.320 NA
#> SRR1643198 1 0.7631 0.241 0.456 0.000 0.320 NA
#> SRR1643199 1 0.7631 0.245 0.456 0.000 0.320 NA
#> SRR1643200 1 0.7631 0.245 0.456 0.000 0.320 NA
#> SRR1643201 1 0.3853 0.515 0.820 0.000 0.020 NA
#> SRR1643202 1 0.3853 0.515 0.820 0.000 0.020 NA
#> SRR1643203 1 0.7129 0.376 0.560 0.000 0.196 NA
#> SRR1643204 1 0.7129 0.376 0.560 0.000 0.196 NA
#> SRR1643205 3 0.3390 0.987 0.132 0.000 0.852 NA
#> SRR1643206 3 0.3390 0.987 0.132 0.000 0.852 NA
#> SRR1643207 3 0.3390 0.987 0.132 0.000 0.852 NA
#> SRR1643208 3 0.3390 0.987 0.132 0.000 0.852 NA
#> SRR1643209 3 0.3390 0.987 0.132 0.000 0.852 NA
#> SRR1643210 3 0.3390 0.987 0.132 0.000 0.852 NA
#> SRR1643211 3 0.2999 0.988 0.132 0.000 0.864 NA
#> SRR1643212 3 0.2999 0.988 0.132 0.000 0.864 NA
#> SRR1643213 3 0.2999 0.988 0.132 0.000 0.864 NA
#> SRR1643214 3 0.2999 0.988 0.132 0.000 0.864 NA
#> SRR1643215 3 0.3271 0.987 0.132 0.000 0.856 NA
#> SRR1643216 3 0.3271 0.987 0.132 0.000 0.856 NA
#> SRR1643217 3 0.3271 0.987 0.132 0.000 0.856 NA
#> SRR1643218 3 0.3271 0.987 0.132 0.000 0.856 NA
#> SRR1643219 3 0.3271 0.987 0.132 0.000 0.856 NA
#> SRR1643220 3 0.3271 0.987 0.132 0.000 0.856 NA
#> SRR1643221 3 0.3271 0.988 0.132 0.000 0.856 NA
#> SRR1643222 3 0.3271 0.988 0.132 0.000 0.856 NA
#> SRR1643223 3 0.3390 0.987 0.132 0.000 0.852 NA
#> SRR1643224 3 0.3390 0.987 0.132 0.000 0.852 NA
#> SRR1643225 3 0.3390 0.987 0.132 0.000 0.852 NA
#> SRR1643226 3 0.3390 0.987 0.132 0.000 0.852 NA
#> SRR1643227 3 0.3390 0.987 0.132 0.000 0.852 NA
#> SRR1643228 3 0.3390 0.987 0.132 0.000 0.852 NA
#> SRR1643229 3 0.3390 0.987 0.132 0.000 0.852 NA
#> SRR1643230 3 0.3390 0.987 0.132 0.000 0.852 NA
#> SRR1643231 3 0.3390 0.987 0.132 0.000 0.852 NA
#> SRR1643232 3 0.3390 0.987 0.132 0.000 0.852 NA
#> SRR1643233 3 0.3271 0.987 0.132 0.000 0.856 NA
#> SRR1643234 3 0.3271 0.987 0.132 0.000 0.856 NA
#> SRR1643235 3 0.3271 0.988 0.132 0.000 0.856 NA
#> SRR1643236 3 0.3271 0.988 0.132 0.000 0.856 NA
#> SRR1643237 3 0.3271 0.988 0.132 0.000 0.856 NA
#> SRR1643238 3 0.3271 0.987 0.132 0.000 0.856 NA
#> SRR1643239 3 0.3271 0.987 0.132 0.000 0.856 NA
#> SRR1643240 3 0.3271 0.987 0.132 0.000 0.856 NA
#> SRR1643241 3 0.3271 0.987 0.132 0.000 0.856 NA
#> SRR1643242 3 0.3390 0.986 0.132 0.000 0.852 NA
#> SRR1643243 3 0.3390 0.986 0.132 0.000 0.852 NA
#> SRR1643245 3 0.3390 0.986 0.132 0.000 0.852 NA
#> SRR1643246 3 0.3390 0.986 0.132 0.000 0.852 NA
#> SRR1643247 3 0.3390 0.986 0.132 0.000 0.852 NA
#> SRR1643248 3 0.3271 0.988 0.132 0.000 0.856 NA
#> SRR1643249 3 0.4701 0.878 0.164 0.000 0.780 NA
#> SRR1643250 1 0.2973 0.548 0.856 0.000 0.000 NA
#> SRR1643251 1 0.2973 0.548 0.856 0.000 0.000 NA
#> SRR1643252 1 0.2973 0.548 0.856 0.000 0.000 NA
#> SRR1643253 1 0.2973 0.548 0.856 0.000 0.000 NA
#> SRR1643254 1 0.2973 0.548 0.856 0.000 0.000 NA
#> SRR1643255 1 0.2973 0.548 0.856 0.000 0.000 NA
#> SRR1643256 1 0.2973 0.548 0.856 0.000 0.000 NA
#> SRR1643257 1 0.2973 0.548 0.856 0.000 0.000 NA
#> SRR1643258 1 0.2973 0.548 0.856 0.000 0.000 NA
#> SRR1643259 1 0.2973 0.548 0.856 0.000 0.000 NA
#> SRR1643260 1 0.2973 0.548 0.856 0.000 0.000 NA
#> SRR1643261 1 0.2973 0.548 0.856 0.000 0.000 NA
#> SRR1643262 1 0.3024 0.548 0.852 0.000 0.000 NA
#> SRR1643263 1 0.3024 0.548 0.852 0.000 0.000 NA
#> SRR1643264 1 0.3024 0.548 0.852 0.000 0.000 NA
#> SRR1643266 1 0.3024 0.548 0.852 0.000 0.000 NA
#> SRR1643267 1 0.3024 0.548 0.852 0.000 0.000 NA
#> SRR1643268 1 0.3024 0.548 0.852 0.000 0.000 NA
#> SRR1643269 1 0.3024 0.548 0.852 0.000 0.000 NA
#> SRR1643270 1 0.3024 0.548 0.852 0.000 0.000 NA
#> SRR1643271 1 0.3024 0.548 0.852 0.000 0.000 NA
#> SRR1643272 1 0.3024 0.548 0.852 0.000 0.000 NA
#> SRR1643273 1 0.3037 0.534 0.880 0.000 0.020 NA
#> SRR1643274 1 0.3037 0.534 0.880 0.000 0.020 NA
#> SRR1643275 1 0.3037 0.534 0.880 0.000 0.020 NA
#> SRR1643276 1 0.3037 0.534 0.880 0.000 0.020 NA
#> SRR1643277 1 0.3037 0.534 0.880 0.000 0.020 NA
#> SRR1643278 1 0.3037 0.534 0.880 0.000 0.020 NA
#> SRR1643279 1 0.3037 0.534 0.880 0.000 0.020 NA
#> SRR1643280 1 0.3037 0.534 0.880 0.000 0.020 NA
#> SRR1643281 1 0.3037 0.534 0.880 0.000 0.020 NA
#> SRR1643282 1 0.3037 0.534 0.880 0.000 0.020 NA
#> SRR1643283 1 0.3037 0.534 0.880 0.000 0.020 NA
#> SRR1643284 1 0.3037 0.534 0.880 0.000 0.020 NA
#> SRR1643285 1 0.3037 0.534 0.880 0.000 0.020 NA
#> SRR1643286 1 0.3037 0.534 0.880 0.000 0.020 NA
#> SRR1643287 1 0.4608 0.503 0.692 0.000 0.004 NA
#> SRR1643288 1 0.4608 0.503 0.692 0.000 0.004 NA
#> SRR1643289 1 0.4608 0.503 0.692 0.000 0.004 NA
#> SRR1643290 1 0.4608 0.503 0.692 0.000 0.004 NA
#> SRR1643291 1 0.4608 0.503 0.692 0.000 0.004 NA
#> SRR1643292 1 0.4608 0.503 0.692 0.000 0.004 NA
#> SRR1643293 1 0.4608 0.503 0.692 0.000 0.004 NA
#> SRR1643294 1 0.4608 0.503 0.692 0.000 0.004 NA
#> SRR1643295 1 0.4608 0.503 0.692 0.000 0.004 NA
#> SRR1643296 1 0.4608 0.503 0.692 0.000 0.004 NA
#> SRR1643297 1 0.4608 0.503 0.692 0.000 0.004 NA
#> SRR1643298 1 0.4608 0.503 0.692 0.000 0.004 NA
#> SRR1643299 1 0.4608 0.503 0.692 0.000 0.004 NA
#> SRR1643300 1 0.4608 0.503 0.692 0.000 0.004 NA
#> SRR1643301 1 0.1610 0.546 0.952 0.000 0.016 NA
#> SRR1643302 1 0.1706 0.546 0.948 0.000 0.016 NA
#> SRR1643303 1 0.1610 0.546 0.952 0.000 0.016 NA
#> SRR1643304 1 0.1610 0.546 0.952 0.000 0.016 NA
#> SRR1643305 1 0.1888 0.545 0.940 0.000 0.016 NA
#> SRR1643306 1 0.1610 0.546 0.952 0.000 0.016 NA
#> SRR1643307 1 0.1610 0.546 0.952 0.000 0.016 NA
#> SRR1643308 1 0.1610 0.546 0.952 0.000 0.016 NA
#> SRR1643309 1 0.1610 0.546 0.952 0.000 0.016 NA
#> SRR1643310 1 0.1610 0.546 0.952 0.000 0.016 NA
#> SRR1643311 1 0.1610 0.546 0.952 0.000 0.016 NA
#> SRR1643312 1 0.1610 0.546 0.952 0.000 0.016 NA
#> SRR1643313 1 0.1510 0.547 0.956 0.000 0.016 NA
#> SRR1643314 1 0.6695 0.416 0.616 0.000 0.164 NA
#> SRR1643315 1 0.6656 0.419 0.620 0.000 0.160 NA
#> SRR1643316 1 0.6656 0.419 0.620 0.000 0.160 NA
#> SRR1643317 1 0.6656 0.419 0.620 0.000 0.160 NA
#> SRR1643318 1 0.6656 0.419 0.620 0.000 0.160 NA
#> SRR1643319 1 0.6656 0.419 0.620 0.000 0.160 NA
#> SRR1643320 1 0.6656 0.419 0.620 0.000 0.160 NA
#> SRR1643321 1 0.6656 0.419 0.620 0.000 0.160 NA
#> SRR1643322 1 0.6656 0.419 0.620 0.000 0.160 NA
#> SRR1643323 1 0.6656 0.419 0.620 0.000 0.160 NA
#> SRR1643324 1 0.6656 0.419 0.620 0.000 0.160 NA
#> SRR1643325 1 0.6656 0.419 0.620 0.000 0.160 NA
#> SRR1643326 1 0.6656 0.419 0.620 0.000 0.160 NA
#> SRR1643327 1 0.6656 0.419 0.620 0.000 0.160 NA
#> SRR1643328 1 0.7619 0.203 0.436 0.000 0.356 NA
#> SRR1643329 1 0.7619 0.203 0.436 0.000 0.356 NA
#> SRR1643330 1 0.7619 0.203 0.436 0.000 0.356 NA
#> SRR1643331 1 0.7619 0.203 0.436 0.000 0.356 NA
#> SRR1643332 1 0.7619 0.203 0.436 0.000 0.356 NA
#> SRR1643333 1 0.7619 0.203 0.436 0.000 0.356 NA
#> SRR1643334 1 0.7654 0.217 0.440 0.000 0.340 NA
#> SRR1643335 1 0.7619 0.203 0.436 0.000 0.356 NA
#> SRR1643336 1 0.7619 0.203 0.436 0.000 0.356 NA
#> SRR1643337 1 0.7619 0.203 0.436 0.000 0.356 NA
#> SRR1643338 1 0.7619 0.203 0.436 0.000 0.356 NA
#> SRR1643339 1 0.7619 0.203 0.436 0.000 0.356 NA
#> SRR1643340 1 0.7619 0.203 0.436 0.000 0.356 NA
#> SRR1643341 1 0.7619 0.203 0.436 0.000 0.356 NA
#> SRR1643342 1 0.7619 0.203 0.436 0.000 0.356 NA
#> SRR1643343 1 0.7211 0.369 0.548 0.000 0.204 NA
#> SRR1643344 1 0.7211 0.369 0.548 0.000 0.204 NA
#> SRR1643345 1 0.7211 0.369 0.548 0.000 0.204 NA
#> SRR1643346 1 0.7211 0.369 0.548 0.000 0.204 NA
#> SRR1643347 1 0.7211 0.369 0.548 0.000 0.204 NA
#> SRR1643348 1 0.7211 0.369 0.548 0.000 0.204 NA
#> SRR1643349 1 0.7211 0.369 0.548 0.000 0.204 NA
#> SRR1643350 1 0.7211 0.369 0.548 0.000 0.204 NA
#> SRR1643351 1 0.7211 0.369 0.548 0.000 0.204 NA
#> SRR1643352 1 0.7211 0.369 0.548 0.000 0.204 NA
#> SRR1643353 1 0.7211 0.369 0.548 0.000 0.204 NA
#> SRR1643354 1 0.7211 0.369 0.548 0.000 0.204 NA
#> SRR1643355 1 0.7211 0.369 0.548 0.000 0.204 NA
#> SRR1643356 1 0.7211 0.369 0.548 0.000 0.204 NA
#> SRR1643357 1 0.7211 0.369 0.548 0.000 0.204 NA
#> SRR1643358 1 0.3569 0.543 0.804 0.000 0.000 NA
#> SRR1643359 1 0.3569 0.543 0.804 0.000 0.000 NA
#> SRR1643360 1 0.3569 0.543 0.804 0.000 0.000 NA
#> SRR1643361 1 0.3569 0.543 0.804 0.000 0.000 NA
#> SRR1643362 1 0.3569 0.543 0.804 0.000 0.000 NA
#> SRR1643363 1 0.3569 0.543 0.804 0.000 0.000 NA
#> SRR1643364 1 0.3569 0.543 0.804 0.000 0.000 NA
#> SRR1643365 1 0.3569 0.543 0.804 0.000 0.000 NA
#> SRR1643366 1 0.3569 0.543 0.804 0.000 0.000 NA
#> SRR1643367 1 0.3569 0.543 0.804 0.000 0.000 NA
#> SRR1643368 1 0.3569 0.543 0.804 0.000 0.000 NA
#> SRR1643369 1 0.3569 0.543 0.804 0.000 0.000 NA
#> SRR1643370 1 0.3569 0.543 0.804 0.000 0.000 NA
#> SRR1643371 1 0.3569 0.543 0.804 0.000 0.000 NA
#> SRR1643372 1 0.3569 0.543 0.804 0.000 0.000 NA
#> SRR1643373 1 0.3610 0.543 0.800 0.000 0.000 NA
#> SRR1643374 1 0.3610 0.543 0.800 0.000 0.000 NA
#> SRR1643375 1 0.3610 0.543 0.800 0.000 0.000 NA
#> SRR1643376 1 0.3610 0.543 0.800 0.000 0.000 NA
#> SRR1643377 1 0.3610 0.543 0.800 0.000 0.000 NA
#> SRR1643378 1 0.3610 0.543 0.800 0.000 0.000 NA
#> SRR1643379 1 0.3610 0.543 0.800 0.000 0.000 NA
#> SRR1643380 1 0.3610 0.543 0.800 0.000 0.000 NA
#> SRR1643381 1 0.3726 0.540 0.788 0.000 0.000 NA
#> SRR1643382 1 0.3610 0.543 0.800 0.000 0.000 NA
#> SRR1643383 1 0.3610 0.543 0.800 0.000 0.000 NA
#> SRR1643384 1 0.3610 0.543 0.800 0.000 0.000 NA
#> SRR1643385 1 0.3610 0.543 0.800 0.000 0.000 NA
#> SRR1643386 1 0.3610 0.543 0.800 0.000 0.000 NA
#> SRR1643387 1 0.3610 0.543 0.800 0.000 0.000 NA
#> SRR1643388 1 0.3610 0.543 0.800 0.000 0.000 NA
#> SRR1643389 1 0.3610 0.543 0.800 0.000 0.000 NA
#> SRR1643390 1 0.7634 0.208 0.436 0.000 0.352 NA
#> SRR1643391 1 0.7634 0.208 0.436 0.000 0.352 NA
#> SRR1643392 1 0.7634 0.208 0.436 0.000 0.352 NA
#> SRR1643393 1 0.7634 0.208 0.436 0.000 0.352 NA
#> SRR1643394 1 0.7634 0.208 0.436 0.000 0.352 NA
#> SRR1643395 1 0.7634 0.208 0.436 0.000 0.352 NA
#> SRR1643396 1 0.7634 0.208 0.436 0.000 0.352 NA
#> SRR1643397 1 0.7634 0.208 0.436 0.000 0.352 NA
#> SRR1643398 1 0.7634 0.208 0.436 0.000 0.352 NA
#> SRR1643399 1 0.7634 0.208 0.436 0.000 0.352 NA
#> SRR1643400 1 0.7634 0.208 0.436 0.000 0.352 NA
#> SRR1643401 1 0.7634 0.208 0.436 0.000 0.352 NA
#> SRR1643402 1 0.7634 0.208 0.436 0.000 0.352 NA
#> SRR1643403 1 0.7634 0.208 0.436 0.000 0.352 NA
#> SRR1643404 1 0.7634 0.208 0.436 0.000 0.352 NA
#> SRR1643405 1 0.7654 0.203 0.432 0.000 0.352 NA
#> SRR1643406 1 0.7654 0.203 0.432 0.000 0.352 NA
#> SRR1643407 1 0.7654 0.203 0.432 0.000 0.352 NA
#> SRR1643408 1 0.7654 0.203 0.432 0.000 0.352 NA
#> SRR1643409 1 0.7654 0.203 0.432 0.000 0.352 NA
#> SRR1643410 1 0.7654 0.203 0.432 0.000 0.352 NA
#> SRR1643411 1 0.7654 0.203 0.432 0.000 0.352 NA
#> SRR1643412 1 0.7654 0.203 0.432 0.000 0.352 NA
#> SRR1643413 1 0.7654 0.203 0.432 0.000 0.352 NA
#> SRR1643414 1 0.7654 0.203 0.432 0.000 0.352 NA
#> SRR1643415 1 0.7654 0.203 0.432 0.000 0.352 NA
#> SRR1643416 1 0.7654 0.203 0.432 0.000 0.352 NA
#> SRR1643417 1 0.7654 0.203 0.432 0.000 0.352 NA
#> SRR1643418 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643419 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643420 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643421 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643422 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643423 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643424 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643425 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643426 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643427 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643428 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643429 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643430 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643431 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643432 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643433 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643434 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643435 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643436 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643437 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643438 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643439 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643440 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643441 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643442 1 0.4844 0.479 0.688 0.000 0.012 NA
#> SRR1643443 2 0.3542 0.866 0.000 0.852 0.028 NA
#> SRR1643444 2 0.3542 0.866 0.000 0.852 0.028 NA
#> SRR1643445 2 0.3542 0.866 0.000 0.852 0.028 NA
#> SRR1643446 2 0.3542 0.866 0.000 0.852 0.028 NA
#> SRR1643447 2 0.3542 0.866 0.000 0.852 0.028 NA
#> SRR1643448 2 0.3542 0.866 0.000 0.852 0.028 NA
#> SRR1643449 2 0.3542 0.866 0.000 0.852 0.028 NA
#> SRR1643450 2 0.3542 0.866 0.000 0.852 0.028 NA
#> SRR1643451 2 0.3542 0.866 0.000 0.852 0.028 NA
#> SRR1643452 2 0.3542 0.866 0.000 0.852 0.028 NA
#> SRR1643453 2 0.3542 0.866 0.000 0.852 0.028 NA
#> SRR1643454 2 0.3542 0.866 0.000 0.852 0.028 NA
#> SRR1643455 2 0.3542 0.866 0.000 0.852 0.028 NA
#> SRR1643456 2 0.3681 0.896 0.000 0.816 0.008 NA
#> SRR1643457 2 0.3681 0.896 0.000 0.816 0.008 NA
#> SRR1643458 2 0.3681 0.896 0.000 0.816 0.008 NA
#> SRR1643459 2 0.3681 0.896 0.000 0.816 0.008 NA
#> SRR1643460 2 0.3681 0.896 0.000 0.816 0.008 NA
#> SRR1643461 2 0.3681 0.896 0.000 0.816 0.008 NA
#> SRR1643462 2 0.3681 0.896 0.000 0.816 0.008 NA
#> SRR1643463 2 0.3681 0.896 0.000 0.816 0.008 NA
#> SRR1643464 2 0.3681 0.896 0.000 0.816 0.008 NA
#> SRR1643466 2 0.3681 0.896 0.000 0.816 0.008 NA
#> SRR1643467 2 0.3681 0.896 0.000 0.816 0.008 NA
#> SRR1643468 2 0.4136 0.892 0.000 0.788 0.016 NA
#> SRR1643469 2 0.4136 0.892 0.000 0.788 0.016 NA
#> SRR1643470 2 0.4136 0.892 0.000 0.788 0.016 NA
#> SRR1643471 2 0.4136 0.892 0.000 0.788 0.016 NA
#> SRR1643472 2 0.4136 0.892 0.000 0.788 0.016 NA
#> SRR1643473 2 0.4136 0.892 0.000 0.788 0.016 NA
#> SRR1643474 2 0.4136 0.892 0.000 0.788 0.016 NA
#> SRR1643475 2 0.4136 0.892 0.000 0.788 0.016 NA
#> SRR1643477 2 0.4136 0.892 0.000 0.788 0.016 NA
#> SRR1643478 2 0.4136 0.892 0.000 0.788 0.016 NA
#> SRR1643479 2 0.4136 0.892 0.000 0.788 0.016 NA
#> SRR1643480 2 0.4136 0.892 0.000 0.788 0.016 NA
#> SRR1643481 2 0.3672 0.897 0.000 0.824 0.012 NA
#> SRR1643482 2 0.3672 0.897 0.000 0.824 0.012 NA
#> SRR1643483 2 0.3672 0.897 0.000 0.824 0.012 NA
#> SRR1643484 2 0.3672 0.897 0.000 0.824 0.012 NA
#> SRR1643485 2 0.3672 0.897 0.000 0.824 0.012 NA
#> SRR1643486 2 0.3672 0.897 0.000 0.824 0.012 NA
#> SRR1643487 2 0.3672 0.897 0.000 0.824 0.012 NA
#> SRR1643488 2 0.3672 0.897 0.000 0.824 0.012 NA
#> SRR1643489 2 0.3672 0.897 0.000 0.824 0.012 NA
#> SRR1643490 2 0.3672 0.897 0.000 0.824 0.012 NA
#> SRR1643491 2 0.3672 0.897 0.000 0.824 0.012 NA
#> SRR1643492 2 0.3672 0.897 0.000 0.824 0.012 NA
#> SRR1643493 2 0.3672 0.897 0.000 0.824 0.012 NA
#> SRR1643494 2 0.3672 0.897 0.000 0.824 0.012 NA
#> SRR1643495 2 0.3672 0.897 0.000 0.824 0.012 NA
#> SRR1643496 2 0.3672 0.897 0.000 0.824 0.012 NA
#> SRR1643497 2 0.4761 0.888 0.000 0.768 0.048 NA
#> SRR1643498 2 0.4761 0.888 0.000 0.768 0.048 NA
#> SRR1643499 2 0.4761 0.888 0.000 0.768 0.048 NA
#> SRR1643500 2 0.4761 0.888 0.000 0.768 0.048 NA
#> SRR1643501 2 0.4761 0.888 0.000 0.768 0.048 NA
#> SRR1643502 2 0.4761 0.888 0.000 0.768 0.048 NA
#> SRR1643503 2 0.4761 0.888 0.000 0.768 0.048 NA
#> SRR1643504 2 0.4761 0.888 0.000 0.768 0.048 NA
#> SRR1643505 2 0.3778 0.882 0.000 0.848 0.052 NA
#> SRR1643506 2 0.4761 0.888 0.000 0.768 0.048 NA
#> SRR1643507 2 0.4761 0.888 0.000 0.768 0.048 NA
#> SRR1643508 2 0.4761 0.888 0.000 0.768 0.048 NA
#> SRR1643509 2 0.4761 0.888 0.000 0.768 0.048 NA
#> SRR1643510 2 0.4761 0.888 0.000 0.768 0.048 NA
#> SRR1643511 2 0.4761 0.888 0.000 0.768 0.048 NA
#> SRR1643512 2 0.4761 0.888 0.000 0.768 0.048 NA
#> SRR1643513 2 0.4761 0.888 0.000 0.768 0.048 NA
#> SRR1643531 2 0.2892 0.874 0.000 0.896 0.036 NA
#> SRR1643532 2 0.2892 0.874 0.000 0.896 0.036 NA
#> SRR1643533 2 0.2908 0.874 0.000 0.896 0.040 NA
#> SRR1643534 2 0.2892 0.874 0.000 0.896 0.036 NA
#> SRR1643535 2 0.2892 0.874 0.000 0.896 0.036 NA
#> SRR1643536 2 0.2908 0.874 0.000 0.896 0.040 NA
#> SRR1643537 2 0.2908 0.874 0.000 0.896 0.040 NA
#> SRR1643538 2 0.2908 0.874 0.000 0.896 0.040 NA
#> SRR1643539 2 0.2892 0.874 0.000 0.896 0.036 NA
#> SRR1643540 2 0.2908 0.874 0.000 0.896 0.040 NA
#> SRR1643541 2 0.2892 0.874 0.000 0.896 0.036 NA
#> SRR1643542 2 0.2892 0.874 0.000 0.896 0.036 NA
#> SRR1643543 2 0.2892 0.874 0.000 0.896 0.036 NA
#> SRR1643544 2 0.2892 0.874 0.000 0.896 0.036 NA
#> SRR1643514 2 0.0657 0.894 0.000 0.984 0.012 NA
#> SRR1643515 2 0.0657 0.894 0.000 0.984 0.012 NA
#> SRR1643516 2 0.0657 0.894 0.000 0.984 0.012 NA
#> SRR1643517 2 0.0657 0.894 0.000 0.984 0.012 NA
#> SRR1643518 2 0.0657 0.894 0.000 0.984 0.012 NA
#> SRR1643519 2 0.0657 0.894 0.000 0.984 0.012 NA
#> SRR1643520 2 0.0657 0.894 0.000 0.984 0.012 NA
#> SRR1643521 2 0.0657 0.894 0.000 0.984 0.012 NA
#> SRR1643522 2 0.0657 0.894 0.000 0.984 0.012 NA
#> SRR1643523 2 0.0657 0.894 0.000 0.984 0.012 NA
#> SRR1643524 2 0.0657 0.894 0.000 0.984 0.012 NA
#> SRR1643525 2 0.0657 0.894 0.000 0.984 0.012 NA
#> SRR1643526 2 0.0657 0.894 0.000 0.984 0.012 NA
#> SRR1643527 2 0.0657 0.894 0.000 0.984 0.012 NA
#> SRR1643528 2 0.0657 0.894 0.000 0.984 0.012 NA
#> SRR1643529 2 0.0657 0.894 0.000 0.984 0.012 NA
#> SRR1643530 2 0.0657 0.894 0.000 0.984 0.012 NA
#> SRR1643545 2 0.4057 0.896 0.000 0.812 0.028 NA
#> SRR1643546 2 0.4057 0.896 0.000 0.812 0.028 NA
#> SRR1643547 2 0.4057 0.896 0.000 0.812 0.028 NA
#> SRR1643548 2 0.4057 0.896 0.000 0.812 0.028 NA
#> SRR1643549 2 0.4057 0.896 0.000 0.812 0.028 NA
#> SRR1643550 2 0.4057 0.896 0.000 0.812 0.028 NA
#> SRR1643551 2 0.4057 0.896 0.000 0.812 0.028 NA
#> SRR1643552 2 0.4057 0.896 0.000 0.812 0.028 NA
#> SRR1643553 2 0.4057 0.896 0.000 0.812 0.028 NA
#> SRR1643554 2 0.4057 0.896 0.000 0.812 0.028 NA
#> SRR1643555 2 0.4057 0.896 0.000 0.812 0.028 NA
#> SRR1643556 2 0.4057 0.896 0.000 0.812 0.028 NA
#> SRR1643558 2 0.4057 0.896 0.000 0.812 0.028 NA
#> SRR1643559 2 0.1724 0.887 0.000 0.948 0.020 NA
#> SRR1643560 2 0.1724 0.887 0.000 0.948 0.020 NA
#> SRR1643561 2 0.1724 0.887 0.000 0.948 0.020 NA
#> SRR1643562 2 0.1724 0.887 0.000 0.948 0.020 NA
#> SRR1643563 2 0.1724 0.887 0.000 0.948 0.020 NA
#> SRR1643564 2 0.1724 0.887 0.000 0.948 0.020 NA
#> SRR1643565 2 0.1724 0.887 0.000 0.948 0.020 NA
#> SRR1643566 2 0.1724 0.887 0.000 0.948 0.020 NA
#> SRR1643567 2 0.1724 0.887 0.000 0.948 0.020 NA
#> SRR1643568 2 0.1724 0.887 0.000 0.948 0.020 NA
#> SRR1643569 2 0.1724 0.887 0.000 0.948 0.020 NA
#> SRR1643570 2 0.1724 0.887 0.000 0.948 0.020 NA
#> SRR1643571 2 0.1724 0.887 0.000 0.948 0.020 NA
#> SRR1643572 2 0.1724 0.887 0.000 0.948 0.020 NA
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 1 0.1507 0.7576 0.952 0.000 0.012 0.024 0.012
#> SRR1643168 1 0.1507 0.7576 0.952 0.000 0.012 0.024 0.012
#> SRR1643169 1 0.1507 0.7576 0.952 0.000 0.012 0.024 0.012
#> SRR1643170 1 0.1507 0.7576 0.952 0.000 0.012 0.024 0.012
#> SRR1643171 1 0.1419 0.7553 0.956 0.000 0.016 0.016 0.012
#> SRR1643172 1 0.1419 0.7553 0.956 0.000 0.016 0.016 0.012
#> SRR1643173 1 0.1419 0.7553 0.956 0.000 0.016 0.016 0.012
#> SRR1643174 1 0.1419 0.7553 0.956 0.000 0.016 0.016 0.012
#> SRR1643175 1 0.4661 0.6351 0.736 0.000 0.020 0.208 0.036
#> SRR1643176 1 0.4661 0.6351 0.736 0.000 0.020 0.208 0.036
#> SRR1643177 1 0.4661 0.6351 0.736 0.000 0.020 0.208 0.036
#> SRR1643178 1 0.4661 0.6351 0.736 0.000 0.020 0.208 0.036
#> SRR1643180 1 0.1518 0.7564 0.952 0.000 0.016 0.020 0.012
#> SRR1643181 1 0.1518 0.7564 0.952 0.000 0.016 0.020 0.012
#> SRR1643182 1 0.1518 0.7564 0.952 0.000 0.016 0.020 0.012
#> SRR1643183 1 0.1518 0.7564 0.952 0.000 0.016 0.020 0.012
#> SRR1643184 1 0.1518 0.7564 0.952 0.000 0.016 0.020 0.012
#> SRR1643185 1 0.1518 0.7564 0.952 0.000 0.016 0.020 0.012
#> SRR1643186 1 0.1518 0.7564 0.952 0.000 0.016 0.020 0.012
#> SRR1643187 1 0.4403 0.6654 0.772 0.000 0.024 0.168 0.036
#> SRR1643188 1 0.4403 0.6654 0.772 0.000 0.024 0.168 0.036
#> SRR1643189 1 0.4403 0.6654 0.772 0.000 0.024 0.168 0.036
#> SRR1643190 1 0.4403 0.6654 0.772 0.000 0.024 0.168 0.036
#> SRR1643191 1 0.1419 0.7553 0.956 0.000 0.016 0.016 0.012
#> SRR1643192 1 0.1419 0.7553 0.956 0.000 0.016 0.016 0.012
#> SRR1643193 1 0.4561 0.6586 0.760 0.000 0.028 0.176 0.036
#> SRR1643194 1 0.4561 0.6586 0.760 0.000 0.028 0.176 0.036
#> SRR1643195 4 0.4782 0.7625 0.236 0.000 0.008 0.708 0.048
#> SRR1643196 4 0.4782 0.7625 0.236 0.000 0.008 0.708 0.048
#> SRR1643197 1 0.1200 0.7580 0.964 0.000 0.008 0.016 0.012
#> SRR1643198 1 0.1200 0.7580 0.964 0.000 0.008 0.016 0.012
#> SRR1643199 1 0.1507 0.7576 0.952 0.000 0.012 0.024 0.012
#> SRR1643200 1 0.1507 0.7576 0.952 0.000 0.012 0.024 0.012
#> SRR1643201 1 0.5371 0.3139 0.612 0.000 0.020 0.332 0.036
#> SRR1643202 1 0.5371 0.3139 0.612 0.000 0.020 0.332 0.036
#> SRR1643203 1 0.3574 0.7344 0.840 0.000 0.020 0.108 0.032
#> SRR1643204 1 0.3574 0.7344 0.840 0.000 0.020 0.108 0.032
#> SRR1643205 3 0.4645 0.9797 0.300 0.000 0.672 0.016 0.012
#> SRR1643206 3 0.4645 0.9797 0.300 0.000 0.672 0.016 0.012
#> SRR1643207 3 0.4645 0.9797 0.300 0.000 0.672 0.016 0.012
#> SRR1643208 3 0.4645 0.9797 0.300 0.000 0.672 0.016 0.012
#> SRR1643209 3 0.4820 0.9768 0.300 0.000 0.664 0.024 0.012
#> SRR1643210 3 0.4820 0.9768 0.300 0.000 0.664 0.024 0.012
#> SRR1643211 3 0.4325 0.9803 0.300 0.000 0.684 0.012 0.004
#> SRR1643212 3 0.4325 0.9803 0.300 0.000 0.684 0.012 0.004
#> SRR1643213 3 0.4325 0.9803 0.300 0.000 0.684 0.012 0.004
#> SRR1643214 3 0.4325 0.9803 0.300 0.000 0.684 0.012 0.004
#> SRR1643215 3 0.4996 0.9753 0.300 0.000 0.656 0.028 0.016
#> SRR1643216 3 0.4996 0.9753 0.300 0.000 0.656 0.028 0.016
#> SRR1643217 3 0.4996 0.9753 0.300 0.000 0.656 0.028 0.016
#> SRR1643218 3 0.4996 0.9753 0.300 0.000 0.656 0.028 0.016
#> SRR1643219 3 0.4996 0.9753 0.300 0.000 0.656 0.028 0.016
#> SRR1643220 3 0.4996 0.9753 0.300 0.000 0.656 0.028 0.016
#> SRR1643221 3 0.4735 0.9798 0.300 0.000 0.668 0.020 0.012
#> SRR1643222 3 0.4735 0.9798 0.300 0.000 0.668 0.020 0.012
#> SRR1643223 3 0.4741 0.9794 0.300 0.000 0.668 0.016 0.016
#> SRR1643224 3 0.4741 0.9794 0.300 0.000 0.668 0.016 0.016
#> SRR1643225 3 0.4741 0.9794 0.300 0.000 0.668 0.016 0.016
#> SRR1643226 3 0.4741 0.9794 0.300 0.000 0.668 0.016 0.016
#> SRR1643227 3 0.4741 0.9794 0.300 0.000 0.668 0.016 0.016
#> SRR1643228 3 0.4741 0.9794 0.300 0.000 0.668 0.016 0.016
#> SRR1643229 3 0.4741 0.9794 0.300 0.000 0.668 0.016 0.016
#> SRR1643230 3 0.4645 0.9797 0.300 0.000 0.672 0.016 0.012
#> SRR1643231 3 0.4741 0.9793 0.300 0.000 0.668 0.016 0.016
#> SRR1643232 3 0.4645 0.9797 0.300 0.000 0.672 0.016 0.012
#> SRR1643233 3 0.4996 0.9753 0.300 0.000 0.656 0.028 0.016
#> SRR1643234 3 0.4996 0.9753 0.300 0.000 0.656 0.028 0.016
#> SRR1643235 3 0.4735 0.9798 0.300 0.000 0.668 0.020 0.012
#> SRR1643236 3 0.4735 0.9798 0.300 0.000 0.668 0.020 0.012
#> SRR1643237 3 0.4735 0.9798 0.300 0.000 0.668 0.020 0.012
#> SRR1643238 3 0.4360 0.9801 0.300 0.000 0.680 0.020 0.000
#> SRR1643239 3 0.4360 0.9801 0.300 0.000 0.680 0.020 0.000
#> SRR1643240 3 0.4360 0.9801 0.300 0.000 0.680 0.020 0.000
#> SRR1643241 3 0.4360 0.9801 0.300 0.000 0.680 0.020 0.000
#> SRR1643242 3 0.5306 0.9683 0.296 0.000 0.644 0.032 0.028
#> SRR1643243 3 0.5150 0.9704 0.296 0.000 0.652 0.028 0.024
#> SRR1643245 3 0.5150 0.9704 0.296 0.000 0.652 0.028 0.024
#> SRR1643246 3 0.5150 0.9704 0.296 0.000 0.652 0.028 0.024
#> SRR1643247 3 0.5150 0.9704 0.296 0.000 0.652 0.028 0.024
#> SRR1643248 3 0.4735 0.9798 0.300 0.000 0.668 0.020 0.012
#> SRR1643249 3 0.5557 0.7512 0.436 0.000 0.512 0.028 0.024
#> SRR1643250 4 0.4424 0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643251 4 0.4424 0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643252 4 0.4424 0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643253 4 0.4424 0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643254 4 0.4424 0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643255 4 0.4424 0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643256 4 0.4424 0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643257 4 0.4424 0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643258 4 0.4424 0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643259 4 0.4424 0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643260 4 0.4424 0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643261 4 0.4424 0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643262 4 0.4281 0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643263 4 0.4281 0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643264 4 0.4281 0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643266 4 0.4281 0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643267 4 0.4281 0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643268 4 0.4281 0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643269 4 0.4281 0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643270 4 0.4281 0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643271 4 0.4281 0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643272 4 0.4281 0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643273 1 0.6234 -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643274 1 0.6234 -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643275 1 0.6234 -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643276 1 0.6234 -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643277 1 0.6234 -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643278 1 0.6234 -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643279 1 0.6234 -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643280 1 0.6234 -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643281 1 0.6234 -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643282 1 0.6234 -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643283 1 0.6234 -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643284 1 0.6234 -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643285 1 0.6234 -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643286 1 0.6234 -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643287 4 0.6216 0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643288 4 0.6216 0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643289 4 0.6216 0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643290 4 0.6216 0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643291 4 0.6216 0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643292 4 0.6216 0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643293 4 0.6216 0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643294 4 0.6216 0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643295 4 0.6216 0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643296 4 0.6216 0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643297 4 0.6216 0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643298 4 0.6216 0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643299 4 0.6216 0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643300 4 0.6216 0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643301 4 0.5313 0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643302 4 0.5313 0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643303 4 0.5313 0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643304 4 0.5313 0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643305 4 0.5315 0.3301 0.456 0.000 0.004 0.500 0.040
#> SRR1643306 4 0.5313 0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643307 4 0.5313 0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643308 4 0.5313 0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643309 4 0.5313 0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643310 4 0.5313 0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643311 4 0.5313 0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643312 4 0.5313 0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643313 4 0.5313 0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643314 1 0.3732 0.6837 0.792 0.000 0.000 0.176 0.032
#> SRR1643315 1 0.3769 0.6806 0.788 0.000 0.000 0.180 0.032
#> SRR1643316 1 0.3805 0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643317 1 0.3805 0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643318 1 0.3805 0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643319 1 0.3876 0.6662 0.776 0.000 0.000 0.192 0.032
#> SRR1643320 1 0.3805 0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643321 1 0.3805 0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643322 1 0.3805 0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643323 1 0.3805 0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643324 1 0.3841 0.6720 0.780 0.000 0.000 0.188 0.032
#> SRR1643325 1 0.3805 0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643326 1 0.3805 0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643327 1 0.3805 0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643328 1 0.1209 0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643329 1 0.1209 0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643330 1 0.1209 0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643331 1 0.1209 0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643332 1 0.1209 0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643333 1 0.1209 0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643334 1 0.1314 0.7546 0.960 0.000 0.016 0.012 0.012
#> SRR1643335 1 0.1209 0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643336 1 0.1209 0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643337 1 0.1209 0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643338 1 0.1209 0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643339 1 0.1209 0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643340 1 0.1209 0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643341 1 0.1209 0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643342 1 0.1209 0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643343 1 0.6170 0.5998 0.652 0.000 0.048 0.160 0.140
#> SRR1643344 1 0.6170 0.5998 0.652 0.000 0.048 0.160 0.140
#> SRR1643345 1 0.6170 0.5998 0.652 0.000 0.048 0.160 0.140
#> SRR1643346 1 0.6196 0.5998 0.652 0.000 0.052 0.160 0.136
#> SRR1643347 1 0.6196 0.5998 0.652 0.000 0.052 0.160 0.136
#> SRR1643348 1 0.6170 0.5998 0.652 0.000 0.048 0.160 0.140
#> SRR1643349 1 0.6196 0.5998 0.652 0.000 0.052 0.160 0.136
#> SRR1643350 1 0.6196 0.5998 0.652 0.000 0.052 0.160 0.136
#> SRR1643351 1 0.6196 0.5998 0.652 0.000 0.052 0.160 0.136
#> SRR1643352 1 0.6196 0.5998 0.652 0.000 0.052 0.160 0.136
#> SRR1643353 1 0.6170 0.5998 0.652 0.000 0.048 0.160 0.140
#> SRR1643354 1 0.6170 0.5998 0.652 0.000 0.048 0.160 0.140
#> SRR1643355 1 0.6196 0.5998 0.652 0.000 0.052 0.160 0.136
#> SRR1643356 1 0.6170 0.5998 0.652 0.000 0.048 0.160 0.140
#> SRR1643357 1 0.6170 0.5998 0.652 0.000 0.048 0.160 0.140
#> SRR1643358 4 0.3778 0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643359 4 0.3778 0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643360 4 0.3778 0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643361 4 0.3778 0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643362 4 0.3778 0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643363 4 0.3778 0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643364 4 0.3778 0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643365 4 0.3778 0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643366 4 0.3778 0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643367 4 0.3778 0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643368 4 0.3778 0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643369 4 0.3778 0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643370 4 0.3778 0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643371 4 0.3778 0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643372 4 0.3778 0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643373 4 0.3806 0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643374 4 0.3806 0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643375 4 0.3806 0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643376 4 0.3806 0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643377 4 0.3806 0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643378 4 0.3806 0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643379 4 0.3806 0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643380 4 0.3806 0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643381 4 0.4037 0.8065 0.184 0.000 0.020 0.780 0.016
#> SRR1643382 4 0.3806 0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643383 4 0.3806 0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643384 4 0.3806 0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643385 4 0.3806 0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643386 4 0.3806 0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643387 4 0.3806 0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643388 4 0.3806 0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643389 4 0.3806 0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643390 1 0.1106 0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643391 1 0.1106 0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643392 1 0.1106 0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643393 1 0.1106 0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643394 1 0.1106 0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643395 1 0.1106 0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643396 1 0.1106 0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643397 1 0.1106 0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643398 1 0.1106 0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643399 1 0.1106 0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643400 1 0.1106 0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643401 1 0.1106 0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643402 1 0.1106 0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643403 1 0.1106 0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643404 1 0.1106 0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643405 1 0.1267 0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643406 1 0.1267 0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643407 1 0.1267 0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643408 1 0.1267 0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643409 1 0.1267 0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643410 1 0.1267 0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643411 1 0.1267 0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643412 1 0.1267 0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643413 1 0.1267 0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643414 1 0.1267 0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643415 1 0.1267 0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643416 1 0.1267 0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643417 1 0.1267 0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643418 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643419 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643420 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643421 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643422 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643423 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643424 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643425 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643426 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643427 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643428 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643429 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643430 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643431 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643432 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643433 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643434 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643435 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643436 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643437 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643438 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643439 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643440 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643441 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643442 4 0.5828 0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643443 5 0.4968 1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643444 5 0.4968 1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643445 5 0.4968 1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643446 5 0.4968 1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643447 5 0.4968 1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643448 5 0.4968 1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643449 5 0.4968 1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643450 5 0.4968 1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643451 5 0.4968 1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643452 5 0.4968 1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643453 5 0.4968 1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643454 5 0.4968 1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643455 5 0.4968 1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643456 2 0.0404 0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643457 2 0.0404 0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643458 2 0.0404 0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643459 2 0.0404 0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643460 2 0.0404 0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643461 2 0.0404 0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643462 2 0.0404 0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643463 2 0.0404 0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643464 2 0.0404 0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643466 2 0.0404 0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643467 2 0.0404 0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643468 2 0.1569 0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643469 2 0.1569 0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643470 2 0.1569 0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643471 2 0.1569 0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643472 2 0.1569 0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643473 2 0.1569 0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643474 2 0.1569 0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643475 2 0.1569 0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643477 2 0.1569 0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643478 2 0.1569 0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643479 2 0.1569 0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643480 2 0.1569 0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643481 2 0.0609 0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643482 2 0.0609 0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643483 2 0.0609 0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643484 2 0.0609 0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643485 2 0.0609 0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643486 2 0.0609 0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643487 2 0.0609 0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643488 2 0.0609 0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643489 2 0.0609 0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643490 2 0.0609 0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643491 2 0.0609 0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643492 2 0.0609 0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643493 2 0.0609 0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643494 2 0.0609 0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643495 2 0.0609 0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643496 2 0.0609 0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643497 2 0.5354 0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643498 2 0.5354 0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643499 2 0.5354 0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643500 2 0.5354 0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643501 2 0.5354 0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643502 2 0.5354 0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643503 2 0.5354 0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643504 2 0.5354 0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643505 2 0.5684 -0.5162 0.000 0.564 0.048 0.020 0.368
#> SRR1643506 2 0.5354 0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643507 2 0.5354 0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643508 2 0.5354 0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643509 2 0.5354 0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643510 2 0.5354 0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643511 2 0.5354 0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643512 2 0.5354 0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643513 2 0.5354 0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643531 2 0.4664 -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643532 2 0.4664 -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643533 2 0.4664 -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643534 2 0.4664 -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643535 2 0.4664 -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643536 2 0.4664 -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643537 2 0.4664 -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643538 2 0.4664 -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643539 2 0.4664 -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643540 2 0.4664 -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643541 2 0.4664 -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643542 2 0.4664 -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643543 2 0.4664 -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643544 2 0.4664 -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643514 2 0.5153 0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643515 2 0.5153 0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643516 2 0.5153 0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643517 2 0.5153 0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643518 2 0.5153 0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643519 2 0.5153 0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643520 2 0.5153 0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643521 2 0.5153 0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643522 2 0.5153 0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643523 2 0.5153 0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643524 2 0.5153 0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643525 2 0.5153 0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643526 2 0.5153 0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643527 2 0.5153 0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643528 2 0.5153 0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643529 2 0.5153 0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643530 2 0.5153 0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643545 2 0.1329 0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643546 2 0.1329 0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643547 2 0.1329 0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643548 2 0.1329 0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643549 2 0.1329 0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643550 2 0.1329 0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643551 2 0.1329 0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643552 2 0.1329 0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643553 2 0.1329 0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643554 2 0.1329 0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643555 2 0.1329 0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643556 2 0.1329 0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643558 2 0.1329 0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643559 2 0.4726 -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643560 2 0.4726 -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643561 2 0.4726 -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643562 2 0.4726 -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643563 2 0.4726 -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643564 2 0.4726 -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643565 2 0.4726 -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643566 2 0.4726 -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643567 2 0.4726 -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643568 2 0.4726 -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643569 2 0.4726 -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643570 2 0.4726 -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643571 2 0.4726 -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643572 2 0.4726 -0.0934 0.000 0.644 0.024 0.004 0.328
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 1 0.2842 0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643168 1 0.2842 0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643169 1 0.2842 0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643170 1 0.2842 0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643171 1 0.2693 0.7305 0.888 0.000 0.004 0.024 0.048 NA
#> SRR1643172 1 0.2693 0.7305 0.888 0.000 0.004 0.024 0.048 NA
#> SRR1643173 1 0.2693 0.7305 0.888 0.000 0.004 0.024 0.048 NA
#> SRR1643174 1 0.2693 0.7305 0.888 0.000 0.004 0.024 0.048 NA
#> SRR1643175 1 0.5192 0.6214 0.688 0.000 0.004 0.184 0.044 NA
#> SRR1643176 1 0.5192 0.6214 0.688 0.000 0.004 0.184 0.044 NA
#> SRR1643177 1 0.5240 0.6169 0.684 0.000 0.004 0.184 0.044 NA
#> SRR1643178 1 0.5192 0.6214 0.688 0.000 0.004 0.184 0.044 NA
#> SRR1643180 1 0.2842 0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643181 1 0.2842 0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643182 1 0.2842 0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643183 1 0.2842 0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643184 1 0.2842 0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643185 1 0.2842 0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643186 1 0.2842 0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643187 1 0.4167 0.7061 0.788 0.000 0.000 0.084 0.056 NA
#> SRR1643188 1 0.4167 0.7061 0.788 0.000 0.000 0.084 0.056 NA
#> SRR1643189 1 0.4167 0.7061 0.788 0.000 0.000 0.084 0.056 NA
#> SRR1643190 1 0.4167 0.7061 0.788 0.000 0.000 0.084 0.056 NA
#> SRR1643191 1 0.2523 0.7328 0.896 0.000 0.004 0.016 0.048 NA
#> SRR1643192 1 0.2523 0.7328 0.896 0.000 0.004 0.016 0.048 NA
#> SRR1643193 1 0.4071 0.6898 0.792 0.000 0.000 0.100 0.048 NA
#> SRR1643194 1 0.4071 0.6898 0.792 0.000 0.000 0.100 0.048 NA
#> SRR1643195 4 0.5352 0.6168 0.232 0.000 0.004 0.644 0.024 NA
#> SRR1643196 4 0.5352 0.6168 0.232 0.000 0.004 0.644 0.024 NA
#> SRR1643197 1 0.2554 0.7349 0.896 0.000 0.004 0.024 0.044 NA
#> SRR1643198 1 0.2554 0.7349 0.896 0.000 0.004 0.024 0.044 NA
#> SRR1643199 1 0.2842 0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643200 1 0.2842 0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643201 1 0.5568 0.5504 0.660 0.000 0.008 0.196 0.064 NA
#> SRR1643202 1 0.5568 0.5504 0.660 0.000 0.008 0.196 0.064 NA
#> SRR1643203 1 0.3463 0.7137 0.836 0.000 0.000 0.076 0.044 NA
#> SRR1643204 1 0.3463 0.7137 0.836 0.000 0.000 0.076 0.044 NA
#> SRR1643205 3 0.2926 0.9678 0.132 0.000 0.844 0.012 0.008 NA
#> SRR1643206 3 0.2926 0.9678 0.132 0.000 0.844 0.012 0.008 NA
#> SRR1643207 3 0.2926 0.9678 0.132 0.000 0.844 0.012 0.008 NA
#> SRR1643208 3 0.2926 0.9678 0.132 0.000 0.844 0.012 0.008 NA
#> SRR1643209 3 0.3569 0.9679 0.132 0.000 0.816 0.012 0.012 NA
#> SRR1643210 3 0.3569 0.9679 0.132 0.000 0.816 0.012 0.012 NA
#> SRR1643211 3 0.3037 0.9702 0.132 0.000 0.840 0.008 0.012 NA
#> SRR1643212 3 0.3037 0.9702 0.132 0.000 0.840 0.008 0.012 NA
#> SRR1643213 3 0.3037 0.9702 0.132 0.000 0.840 0.008 0.012 NA
#> SRR1643214 3 0.3037 0.9702 0.132 0.000 0.840 0.008 0.012 NA
#> SRR1643215 3 0.3859 0.9638 0.132 0.000 0.800 0.008 0.020 NA
#> SRR1643216 3 0.3859 0.9638 0.132 0.000 0.800 0.008 0.020 NA
#> SRR1643217 3 0.3859 0.9638 0.132 0.000 0.800 0.008 0.020 NA
#> SRR1643218 3 0.3859 0.9638 0.132 0.000 0.800 0.008 0.020 NA
#> SRR1643219 3 0.3859 0.9638 0.132 0.000 0.800 0.008 0.020 NA
#> SRR1643220 3 0.3859 0.9638 0.132 0.000 0.800 0.008 0.020 NA
#> SRR1643221 3 0.3318 0.9682 0.132 0.000 0.828 0.008 0.016 NA
#> SRR1643222 3 0.3318 0.9682 0.132 0.000 0.828 0.008 0.016 NA
#> SRR1643223 3 0.3017 0.9677 0.132 0.000 0.840 0.016 0.008 NA
#> SRR1643224 3 0.3017 0.9677 0.132 0.000 0.840 0.016 0.008 NA
#> SRR1643225 3 0.3017 0.9677 0.132 0.000 0.840 0.016 0.008 NA
#> SRR1643226 3 0.3017 0.9677 0.132 0.000 0.840 0.016 0.008 NA
#> SRR1643227 3 0.3017 0.9677 0.132 0.000 0.840 0.016 0.008 NA
#> SRR1643228 3 0.3017 0.9677 0.132 0.000 0.840 0.016 0.008 NA
#> SRR1643229 3 0.3017 0.9677 0.132 0.000 0.840 0.016 0.008 NA
#> SRR1643230 3 0.3017 0.9677 0.132 0.000 0.840 0.016 0.008 NA
#> SRR1643231 3 0.3116 0.9670 0.132 0.000 0.836 0.016 0.012 NA
#> SRR1643232 3 0.2926 0.9678 0.132 0.000 0.844 0.012 0.008 NA
#> SRR1643233 3 0.3706 0.9654 0.132 0.000 0.808 0.008 0.016 NA
#> SRR1643234 3 0.3706 0.9654 0.132 0.000 0.808 0.008 0.016 NA
#> SRR1643235 3 0.3227 0.9685 0.132 0.000 0.832 0.008 0.012 NA
#> SRR1643236 3 0.3404 0.9688 0.132 0.000 0.824 0.008 0.016 NA
#> SRR1643237 3 0.3404 0.9688 0.132 0.000 0.824 0.008 0.016 NA
#> SRR1643238 3 0.3691 0.9656 0.132 0.000 0.808 0.004 0.024 NA
#> SRR1643239 3 0.3691 0.9656 0.132 0.000 0.808 0.004 0.024 NA
#> SRR1643240 3 0.3691 0.9656 0.132 0.000 0.808 0.004 0.024 NA
#> SRR1643241 3 0.3691 0.9656 0.132 0.000 0.808 0.004 0.024 NA
#> SRR1643242 3 0.3647 0.9650 0.132 0.000 0.812 0.008 0.020 NA
#> SRR1643243 3 0.3561 0.9658 0.132 0.000 0.816 0.008 0.016 NA
#> SRR1643245 3 0.3561 0.9658 0.132 0.000 0.816 0.008 0.016 NA
#> SRR1643246 3 0.3561 0.9658 0.132 0.000 0.816 0.008 0.016 NA
#> SRR1643247 3 0.3561 0.9658 0.132 0.000 0.816 0.008 0.016 NA
#> SRR1643248 3 0.2716 0.9688 0.132 0.000 0.852 0.008 0.004 NA
#> SRR1643249 3 0.5610 0.6763 0.308 0.000 0.588 0.008 0.048 NA
#> SRR1643250 4 0.4649 0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643251 4 0.4649 0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643252 4 0.4649 0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643253 4 0.4649 0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643254 4 0.4649 0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643255 4 0.4649 0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643256 4 0.4649 0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643257 4 0.4649 0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643258 4 0.4649 0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643259 4 0.4649 0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643260 4 0.4649 0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643261 4 0.4649 0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643262 4 0.4510 0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643263 4 0.4510 0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643264 4 0.4510 0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643266 4 0.4510 0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643267 4 0.4510 0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643268 4 0.4510 0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643269 4 0.4510 0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643270 4 0.4510 0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643271 4 0.4510 0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643272 4 0.4510 0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643273 1 0.6319 -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643274 1 0.6319 -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643275 1 0.6319 -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643276 1 0.6322 -0.0485 0.396 0.000 0.000 0.344 0.012 NA
#> SRR1643277 1 0.6319 -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643278 1 0.6319 -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643279 1 0.6319 -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643280 1 0.6319 -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643281 1 0.6319 -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643282 1 0.6319 -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643283 1 0.6319 -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643284 1 0.6319 -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643285 1 0.6319 -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643286 1 0.6319 -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643287 4 0.5330 0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643288 4 0.5330 0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643289 4 0.5330 0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643290 4 0.5330 0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643291 4 0.5330 0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643292 4 0.5330 0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643293 4 0.5330 0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643294 4 0.5330 0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643295 4 0.5330 0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643296 4 0.5330 0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643297 4 0.5330 0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643298 4 0.5330 0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643299 4 0.5330 0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643300 4 0.5330 0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643301 4 0.5735 0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643302 4 0.5735 0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643303 4 0.5735 0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643304 4 0.5735 0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643305 4 0.5735 0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643306 4 0.5735 0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643307 4 0.5735 0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643308 4 0.5735 0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643309 4 0.5735 0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643310 4 0.5735 0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643311 4 0.5735 0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643312 4 0.5735 0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643313 4 0.5735 0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643314 1 0.4350 0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643315 1 0.4350 0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643316 1 0.4350 0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643317 1 0.4350 0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643318 1 0.4350 0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643319 1 0.4350 0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643320 1 0.4350 0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643321 1 0.4350 0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643322 1 0.4350 0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643323 1 0.4350 0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643324 1 0.4350 0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643325 1 0.4350 0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643326 1 0.4350 0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643327 1 0.4350 0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643328 1 0.2384 0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643329 1 0.2384 0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643330 1 0.2384 0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643331 1 0.2384 0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643332 1 0.2384 0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643333 1 0.2384 0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643334 1 0.2051 0.7453 0.924 0.000 0.012 0.012 0.020 NA
#> SRR1643335 1 0.2384 0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643336 1 0.2384 0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643337 1 0.2384 0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643338 1 0.2384 0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643339 1 0.2384 0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643340 1 0.2384 0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643341 1 0.2384 0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643342 1 0.2384 0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643343 1 0.6656 0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643344 1 0.6656 0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643345 1 0.6656 0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643346 1 0.6656 0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643347 1 0.6656 0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643348 1 0.6656 0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643349 1 0.6656 0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643350 1 0.6656 0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643351 1 0.6656 0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643352 1 0.6656 0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643353 1 0.6656 0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643354 1 0.6656 0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643355 1 0.6656 0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643356 1 0.6656 0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643357 1 0.6656 0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643358 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643359 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643360 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643361 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643362 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643363 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643364 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643365 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643366 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643367 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643368 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643369 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643370 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643371 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643372 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643373 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643374 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643375 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643376 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643377 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643378 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643379 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643380 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643381 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643382 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643383 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643384 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643385 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643386 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643387 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643388 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643389 4 0.3333 0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643390 1 0.3134 0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643391 1 0.3134 0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643392 1 0.3134 0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643393 1 0.3134 0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643394 1 0.3134 0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643395 1 0.3134 0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643396 1 0.3134 0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643397 1 0.3134 0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643398 1 0.3134 0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643399 1 0.3134 0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643400 1 0.3134 0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643401 1 0.3134 0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643402 1 0.3134 0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643403 1 0.3134 0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643404 1 0.3134 0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643405 1 0.3741 0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643406 1 0.3741 0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643407 1 0.3741 0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643408 1 0.3741 0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643409 1 0.3741 0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643410 1 0.3741 0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643411 1 0.3741 0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643412 1 0.3741 0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643413 1 0.3741 0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643414 1 0.3741 0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643415 1 0.3741 0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643416 1 0.3741 0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643417 1 0.3741 0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643418 4 0.5859 0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643419 4 0.5859 0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643420 4 0.5859 0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643421 4 0.5859 0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643422 4 0.5859 0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643423 4 0.5859 0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643424 4 0.5859 0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643425 4 0.5859 0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643426 4 0.5859 0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643427 4 0.5859 0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643428 4 0.5859 0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643429 4 0.5859 0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643430 4 0.5762 0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643431 4 0.5762 0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643432 4 0.5762 0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643433 4 0.5762 0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643434 4 0.5762 0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643435 4 0.5762 0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643436 4 0.5762 0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643437 4 0.5762 0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643438 4 0.5762 0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643439 4 0.5762 0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643440 4 0.5762 0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643441 4 0.5762 0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643442 4 0.5762 0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643443 5 0.5928 0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643444 5 0.5928 0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643445 5 0.5928 0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643446 5 0.5928 0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643447 5 0.5928 0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643448 5 0.5928 0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643449 5 0.5928 0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643450 5 0.5928 0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643451 5 0.5928 0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643452 5 0.5928 0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643453 5 0.5928 0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643454 5 0.5928 0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643455 5 0.5928 0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643456 2 0.1785 0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643457 2 0.1785 0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643458 2 0.1785 0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643459 2 0.1785 0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643460 2 0.1785 0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643461 2 0.1785 0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643462 2 0.1785 0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643463 2 0.1785 0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643464 2 0.1785 0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643466 2 0.1785 0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643467 2 0.1785 0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643468 2 0.1774 0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643469 2 0.1774 0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643470 2 0.1774 0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643471 2 0.1774 0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643472 2 0.1774 0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643473 2 0.1774 0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643474 2 0.1774 0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643475 2 0.1774 0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643477 2 0.1774 0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643478 2 0.1774 0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643479 2 0.1774 0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643480 2 0.1774 0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643481 2 0.0951 0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643482 2 0.0951 0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643483 2 0.0951 0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643484 2 0.0951 0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643485 2 0.0951 0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643486 2 0.0951 0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643487 2 0.0951 0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643488 2 0.0951 0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643489 2 0.0951 0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643490 2 0.0951 0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643491 2 0.0951 0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643492 2 0.0951 0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643493 2 0.0951 0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643494 2 0.0951 0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643495 2 0.0951 0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643496 2 0.0951 0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643497 2 0.5176 0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643498 2 0.5176 0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643499 2 0.5176 0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643500 2 0.5176 0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643501 2 0.5176 0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643502 2 0.5176 0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643503 2 0.5176 0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643504 2 0.5176 0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643505 2 0.6143 -0.4181 0.000 0.508 0.020 0.016 0.344 NA
#> SRR1643506 2 0.5176 0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643507 2 0.5176 0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643508 2 0.5176 0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643509 2 0.5176 0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643510 2 0.5176 0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643511 2 0.5176 0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643512 2 0.5176 0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643513 2 0.5176 0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643531 5 0.4908 0.7777 0.000 0.468 0.036 0.000 0.484 NA
#> SRR1643532 5 0.4964 0.7772 0.000 0.468 0.040 0.000 0.480 NA
#> SRR1643533 5 0.4908 0.7777 0.000 0.468 0.036 0.000 0.484 NA
#> SRR1643534 5 0.4964 0.7772 0.000 0.468 0.040 0.000 0.480 NA
#> SRR1643535 5 0.4908 0.7777 0.000 0.468 0.036 0.000 0.484 NA
#> SRR1643536 5 0.4964 0.7772 0.000 0.468 0.040 0.000 0.480 NA
#> SRR1643537 5 0.4908 0.7777 0.000 0.468 0.036 0.000 0.484 NA
#> SRR1643538 5 0.4964 0.7772 0.000 0.468 0.040 0.000 0.480 NA
#> SRR1643539 5 0.4908 0.7777 0.000 0.468 0.036 0.000 0.484 NA
#> SRR1643540 5 0.4964 0.7772 0.000 0.468 0.040 0.000 0.480 NA
#> SRR1643541 5 0.4908 0.7777 0.000 0.468 0.036 0.000 0.484 NA
#> SRR1643542 5 0.4908 0.7777 0.000 0.468 0.036 0.000 0.484 NA
#> SRR1643543 5 0.4908 0.7777 0.000 0.468 0.036 0.000 0.484 NA
#> SRR1643544 5 0.4908 0.7777 0.000 0.468 0.036 0.000 0.484 NA
#> SRR1643514 2 0.3852 -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643515 2 0.3852 -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643516 2 0.3852 -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643517 2 0.3852 -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643518 2 0.3852 -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643519 2 0.3852 -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643520 2 0.3852 -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643521 2 0.3852 -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643522 2 0.3852 -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643523 2 0.3852 -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643524 2 0.3852 -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643525 2 0.3852 -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643526 2 0.3852 -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643527 2 0.3852 -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643528 2 0.3852 -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643529 2 0.3852 -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643530 2 0.3852 -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643545 2 0.1821 0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643546 2 0.1821 0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643547 2 0.1821 0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643548 2 0.1821 0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643549 2 0.1821 0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643550 2 0.1821 0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643551 2 0.1821 0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643552 2 0.1821 0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643553 2 0.1821 0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643554 2 0.1821 0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643555 2 0.1821 0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643556 2 0.1821 0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643558 2 0.1821 0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643559 2 0.4086 -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643560 2 0.4086 -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643561 2 0.4086 -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643562 2 0.4086 -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643563 2 0.4086 -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643564 2 0.4086 -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643565 2 0.4086 -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643566 2 0.4086 -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643567 2 0.4086 -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643568 2 0.4086 -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643569 2 0.4086 -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643570 2 0.4086 -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643571 2 0.4086 -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643572 2 0.4086 -0.5129 0.000 0.528 0.000 0.008 0.464 NA
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["CV", "skmeans"]
# you can also extract it by
# res = res_list["CV:skmeans"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'CV' method.
#> Subgroups are detected by 'skmeans' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 4.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.4350 0.566 0.566
#> 3 3 0.779 0.946 0.941 0.4838 0.768 0.591
#> 4 4 0.931 0.926 0.949 0.1185 0.869 0.649
#> 5 5 0.849 0.812 0.851 0.0559 0.965 0.881
#> 6 6 0.795 0.676 0.758 0.0399 0.909 0.677
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 4
#> attr(,"optional")
#> [1] 2
There is also optional best \(k\) = 2 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 3 0.4399 0.905 0.188 0 0.812
#> SRR1643168 3 0.4399 0.905 0.188 0 0.812
#> SRR1643169 3 0.4399 0.905 0.188 0 0.812
#> SRR1643170 3 0.4399 0.905 0.188 0 0.812
#> SRR1643171 3 0.4399 0.905 0.188 0 0.812
#> SRR1643172 3 0.4399 0.905 0.188 0 0.812
#> SRR1643173 3 0.4399 0.905 0.188 0 0.812
#> SRR1643174 3 0.4399 0.905 0.188 0 0.812
#> SRR1643175 3 0.5291 0.850 0.268 0 0.732
#> SRR1643176 3 0.5291 0.850 0.268 0 0.732
#> SRR1643177 3 0.5291 0.850 0.268 0 0.732
#> SRR1643178 3 0.5291 0.850 0.268 0 0.732
#> SRR1643180 3 0.4399 0.905 0.188 0 0.812
#> SRR1643181 3 0.4399 0.905 0.188 0 0.812
#> SRR1643182 3 0.4399 0.905 0.188 0 0.812
#> SRR1643183 3 0.4399 0.905 0.188 0 0.812
#> SRR1643184 3 0.4399 0.905 0.188 0 0.812
#> SRR1643185 3 0.4399 0.905 0.188 0 0.812
#> SRR1643186 3 0.4399 0.905 0.188 0 0.812
#> SRR1643187 3 0.5178 0.864 0.256 0 0.744
#> SRR1643188 3 0.5178 0.864 0.256 0 0.744
#> SRR1643189 3 0.5178 0.864 0.256 0 0.744
#> SRR1643190 3 0.5178 0.864 0.256 0 0.744
#> SRR1643191 3 0.4399 0.905 0.188 0 0.812
#> SRR1643192 3 0.4399 0.905 0.188 0 0.812
#> SRR1643193 3 0.5058 0.872 0.244 0 0.756
#> SRR1643194 3 0.5058 0.872 0.244 0 0.756
#> SRR1643195 1 0.0000 0.988 1.000 0 0.000
#> SRR1643196 1 0.0000 0.988 1.000 0 0.000
#> SRR1643197 3 0.4399 0.905 0.188 0 0.812
#> SRR1643198 3 0.4399 0.905 0.188 0 0.812
#> SRR1643199 3 0.4399 0.905 0.188 0 0.812
#> SRR1643200 3 0.4399 0.905 0.188 0 0.812
#> SRR1643201 1 0.0237 0.985 0.996 0 0.004
#> SRR1643202 1 0.0237 0.985 0.996 0 0.004
#> SRR1643203 3 0.4399 0.905 0.188 0 0.812
#> SRR1643204 3 0.4399 0.905 0.188 0 0.812
#> SRR1643205 3 0.0000 0.829 0.000 0 1.000
#> SRR1643206 3 0.0000 0.829 0.000 0 1.000
#> SRR1643207 3 0.0000 0.829 0.000 0 1.000
#> SRR1643208 3 0.0000 0.829 0.000 0 1.000
#> SRR1643209 3 0.0000 0.829 0.000 0 1.000
#> SRR1643210 3 0.0000 0.829 0.000 0 1.000
#> SRR1643211 3 0.0000 0.829 0.000 0 1.000
#> SRR1643212 3 0.0000 0.829 0.000 0 1.000
#> SRR1643213 3 0.0000 0.829 0.000 0 1.000
#> SRR1643214 3 0.0000 0.829 0.000 0 1.000
#> SRR1643215 3 0.0000 0.829 0.000 0 1.000
#> SRR1643216 3 0.0000 0.829 0.000 0 1.000
#> SRR1643217 3 0.0000 0.829 0.000 0 1.000
#> SRR1643218 3 0.0000 0.829 0.000 0 1.000
#> SRR1643219 3 0.0000 0.829 0.000 0 1.000
#> SRR1643220 3 0.0000 0.829 0.000 0 1.000
#> SRR1643221 3 0.0000 0.829 0.000 0 1.000
#> SRR1643222 3 0.0000 0.829 0.000 0 1.000
#> SRR1643223 3 0.0000 0.829 0.000 0 1.000
#> SRR1643224 3 0.0000 0.829 0.000 0 1.000
#> SRR1643225 3 0.0000 0.829 0.000 0 1.000
#> SRR1643226 3 0.0000 0.829 0.000 0 1.000
#> SRR1643227 3 0.0000 0.829 0.000 0 1.000
#> SRR1643228 3 0.0000 0.829 0.000 0 1.000
#> SRR1643229 3 0.0000 0.829 0.000 0 1.000
#> SRR1643230 3 0.0000 0.829 0.000 0 1.000
#> SRR1643231 3 0.0000 0.829 0.000 0 1.000
#> SRR1643232 3 0.0000 0.829 0.000 0 1.000
#> SRR1643233 3 0.0000 0.829 0.000 0 1.000
#> SRR1643234 3 0.0000 0.829 0.000 0 1.000
#> SRR1643235 3 0.0000 0.829 0.000 0 1.000
#> SRR1643236 3 0.0000 0.829 0.000 0 1.000
#> SRR1643237 3 0.0000 0.829 0.000 0 1.000
#> SRR1643238 3 0.0000 0.829 0.000 0 1.000
#> SRR1643239 3 0.0000 0.829 0.000 0 1.000
#> SRR1643240 3 0.0000 0.829 0.000 0 1.000
#> SRR1643241 3 0.0000 0.829 0.000 0 1.000
#> SRR1643242 3 0.0000 0.829 0.000 0 1.000
#> SRR1643243 3 0.0000 0.829 0.000 0 1.000
#> SRR1643245 3 0.0000 0.829 0.000 0 1.000
#> SRR1643246 3 0.0000 0.829 0.000 0 1.000
#> SRR1643247 3 0.0000 0.829 0.000 0 1.000
#> SRR1643248 3 0.0000 0.829 0.000 0 1.000
#> SRR1643249 3 0.0000 0.829 0.000 0 1.000
#> SRR1643250 1 0.0000 0.988 1.000 0 0.000
#> SRR1643251 1 0.0000 0.988 1.000 0 0.000
#> SRR1643252 1 0.0000 0.988 1.000 0 0.000
#> SRR1643253 1 0.0000 0.988 1.000 0 0.000
#> SRR1643254 1 0.0000 0.988 1.000 0 0.000
#> SRR1643255 1 0.0000 0.988 1.000 0 0.000
#> SRR1643256 1 0.0000 0.988 1.000 0 0.000
#> SRR1643257 1 0.0000 0.988 1.000 0 0.000
#> SRR1643258 1 0.0000 0.988 1.000 0 0.000
#> SRR1643259 1 0.0000 0.988 1.000 0 0.000
#> SRR1643260 1 0.0000 0.988 1.000 0 0.000
#> SRR1643261 1 0.0000 0.988 1.000 0 0.000
#> SRR1643262 1 0.0000 0.988 1.000 0 0.000
#> SRR1643263 1 0.0000 0.988 1.000 0 0.000
#> SRR1643264 1 0.0000 0.988 1.000 0 0.000
#> SRR1643266 1 0.0000 0.988 1.000 0 0.000
#> SRR1643267 1 0.0000 0.988 1.000 0 0.000
#> SRR1643268 1 0.0000 0.988 1.000 0 0.000
#> SRR1643269 1 0.0000 0.988 1.000 0 0.000
#> SRR1643270 1 0.0000 0.988 1.000 0 0.000
#> SRR1643271 1 0.0000 0.988 1.000 0 0.000
#> SRR1643272 1 0.0000 0.988 1.000 0 0.000
#> SRR1643273 1 0.2356 0.915 0.928 0 0.072
#> SRR1643274 1 0.2356 0.915 0.928 0 0.072
#> SRR1643275 1 0.2356 0.915 0.928 0 0.072
#> SRR1643276 1 0.2356 0.915 0.928 0 0.072
#> SRR1643277 1 0.2356 0.915 0.928 0 0.072
#> SRR1643278 1 0.2356 0.915 0.928 0 0.072
#> SRR1643279 1 0.2356 0.915 0.928 0 0.072
#> SRR1643280 1 0.2356 0.915 0.928 0 0.072
#> SRR1643281 1 0.2356 0.915 0.928 0 0.072
#> SRR1643282 1 0.2356 0.915 0.928 0 0.072
#> SRR1643283 1 0.2356 0.915 0.928 0 0.072
#> SRR1643284 1 0.2356 0.915 0.928 0 0.072
#> SRR1643285 1 0.2356 0.915 0.928 0 0.072
#> SRR1643286 1 0.2356 0.915 0.928 0 0.072
#> SRR1643287 1 0.0000 0.988 1.000 0 0.000
#> SRR1643288 1 0.0000 0.988 1.000 0 0.000
#> SRR1643289 1 0.0000 0.988 1.000 0 0.000
#> SRR1643290 1 0.0000 0.988 1.000 0 0.000
#> SRR1643291 1 0.0000 0.988 1.000 0 0.000
#> SRR1643292 1 0.0000 0.988 1.000 0 0.000
#> SRR1643293 1 0.0000 0.988 1.000 0 0.000
#> SRR1643294 1 0.0000 0.988 1.000 0 0.000
#> SRR1643295 1 0.0000 0.988 1.000 0 0.000
#> SRR1643296 1 0.0000 0.988 1.000 0 0.000
#> SRR1643297 1 0.0000 0.988 1.000 0 0.000
#> SRR1643298 1 0.0000 0.988 1.000 0 0.000
#> SRR1643299 1 0.0000 0.988 1.000 0 0.000
#> SRR1643300 1 0.0000 0.988 1.000 0 0.000
#> SRR1643301 1 0.0592 0.979 0.988 0 0.012
#> SRR1643302 1 0.0592 0.979 0.988 0 0.012
#> SRR1643303 1 0.0592 0.979 0.988 0 0.012
#> SRR1643304 1 0.0592 0.979 0.988 0 0.012
#> SRR1643305 1 0.0592 0.979 0.988 0 0.012
#> SRR1643306 1 0.0592 0.979 0.988 0 0.012
#> SRR1643307 1 0.0592 0.979 0.988 0 0.012
#> SRR1643308 1 0.0592 0.979 0.988 0 0.012
#> SRR1643309 1 0.0592 0.979 0.988 0 0.012
#> SRR1643310 1 0.0592 0.979 0.988 0 0.012
#> SRR1643311 1 0.0592 0.979 0.988 0 0.012
#> SRR1643312 1 0.0592 0.979 0.988 0 0.012
#> SRR1643313 1 0.0592 0.979 0.988 0 0.012
#> SRR1643314 3 0.5138 0.866 0.252 0 0.748
#> SRR1643315 3 0.5178 0.864 0.256 0 0.744
#> SRR1643316 3 0.5178 0.864 0.256 0 0.744
#> SRR1643317 3 0.5178 0.864 0.256 0 0.744
#> SRR1643318 3 0.5178 0.864 0.256 0 0.744
#> SRR1643319 3 0.5178 0.864 0.256 0 0.744
#> SRR1643320 3 0.5178 0.864 0.256 0 0.744
#> SRR1643321 3 0.5178 0.864 0.256 0 0.744
#> SRR1643322 3 0.5178 0.864 0.256 0 0.744
#> SRR1643323 3 0.5178 0.864 0.256 0 0.744
#> SRR1643324 3 0.5178 0.864 0.256 0 0.744
#> SRR1643325 3 0.5178 0.864 0.256 0 0.744
#> SRR1643326 3 0.5178 0.864 0.256 0 0.744
#> SRR1643327 3 0.5178 0.864 0.256 0 0.744
#> SRR1643328 3 0.4399 0.905 0.188 0 0.812
#> SRR1643329 3 0.4399 0.905 0.188 0 0.812
#> SRR1643330 3 0.4399 0.905 0.188 0 0.812
#> SRR1643331 3 0.4399 0.905 0.188 0 0.812
#> SRR1643332 3 0.4399 0.905 0.188 0 0.812
#> SRR1643333 3 0.4399 0.905 0.188 0 0.812
#> SRR1643334 3 0.4399 0.905 0.188 0 0.812
#> SRR1643335 3 0.4399 0.905 0.188 0 0.812
#> SRR1643336 3 0.4399 0.905 0.188 0 0.812
#> SRR1643337 3 0.4399 0.905 0.188 0 0.812
#> SRR1643338 3 0.4399 0.905 0.188 0 0.812
#> SRR1643339 3 0.4399 0.905 0.188 0 0.812
#> SRR1643340 3 0.4399 0.905 0.188 0 0.812
#> SRR1643341 3 0.4399 0.905 0.188 0 0.812
#> SRR1643342 3 0.4399 0.905 0.188 0 0.812
#> SRR1643343 3 0.5178 0.864 0.256 0 0.744
#> SRR1643344 3 0.5178 0.864 0.256 0 0.744
#> SRR1643345 3 0.5178 0.864 0.256 0 0.744
#> SRR1643346 3 0.5178 0.864 0.256 0 0.744
#> SRR1643347 3 0.5178 0.864 0.256 0 0.744
#> SRR1643348 3 0.5178 0.864 0.256 0 0.744
#> SRR1643349 3 0.5178 0.864 0.256 0 0.744
#> SRR1643350 3 0.5178 0.864 0.256 0 0.744
#> SRR1643351 3 0.5178 0.864 0.256 0 0.744
#> SRR1643352 3 0.5178 0.864 0.256 0 0.744
#> SRR1643353 3 0.5178 0.864 0.256 0 0.744
#> SRR1643354 3 0.5178 0.864 0.256 0 0.744
#> SRR1643355 3 0.5178 0.864 0.256 0 0.744
#> SRR1643356 3 0.5178 0.864 0.256 0 0.744
#> SRR1643357 3 0.5178 0.864 0.256 0 0.744
#> SRR1643358 1 0.0000 0.988 1.000 0 0.000
#> SRR1643359 1 0.0000 0.988 1.000 0 0.000
#> SRR1643360 1 0.0000 0.988 1.000 0 0.000
#> SRR1643361 1 0.0000 0.988 1.000 0 0.000
#> SRR1643362 1 0.0000 0.988 1.000 0 0.000
#> SRR1643363 1 0.0000 0.988 1.000 0 0.000
#> SRR1643364 1 0.0000 0.988 1.000 0 0.000
#> SRR1643365 1 0.0000 0.988 1.000 0 0.000
#> SRR1643366 1 0.0000 0.988 1.000 0 0.000
#> SRR1643367 1 0.0000 0.988 1.000 0 0.000
#> SRR1643368 1 0.0000 0.988 1.000 0 0.000
#> SRR1643369 1 0.0000 0.988 1.000 0 0.000
#> SRR1643370 1 0.0000 0.988 1.000 0 0.000
#> SRR1643371 1 0.0000 0.988 1.000 0 0.000
#> SRR1643372 1 0.0000 0.988 1.000 0 0.000
#> SRR1643373 1 0.0000 0.988 1.000 0 0.000
#> SRR1643374 1 0.0000 0.988 1.000 0 0.000
#> SRR1643375 1 0.0000 0.988 1.000 0 0.000
#> SRR1643376 1 0.0000 0.988 1.000 0 0.000
#> SRR1643377 1 0.0000 0.988 1.000 0 0.000
#> SRR1643378 1 0.0000 0.988 1.000 0 0.000
#> SRR1643379 1 0.0000 0.988 1.000 0 0.000
#> SRR1643380 1 0.0000 0.988 1.000 0 0.000
#> SRR1643381 1 0.0000 0.988 1.000 0 0.000
#> SRR1643382 1 0.0000 0.988 1.000 0 0.000
#> SRR1643383 1 0.0000 0.988 1.000 0 0.000
#> SRR1643384 1 0.0000 0.988 1.000 0 0.000
#> SRR1643385 1 0.0000 0.988 1.000 0 0.000
#> SRR1643386 1 0.0000 0.988 1.000 0 0.000
#> SRR1643387 1 0.0000 0.988 1.000 0 0.000
#> SRR1643388 1 0.0000 0.988 1.000 0 0.000
#> SRR1643389 1 0.0000 0.988 1.000 0 0.000
#> SRR1643390 3 0.4399 0.905 0.188 0 0.812
#> SRR1643391 3 0.4399 0.905 0.188 0 0.812
#> SRR1643392 3 0.4399 0.905 0.188 0 0.812
#> SRR1643393 3 0.4399 0.905 0.188 0 0.812
#> SRR1643394 3 0.4399 0.905 0.188 0 0.812
#> SRR1643395 3 0.4399 0.905 0.188 0 0.812
#> SRR1643396 3 0.4399 0.905 0.188 0 0.812
#> SRR1643397 3 0.4399 0.905 0.188 0 0.812
#> SRR1643398 3 0.4399 0.905 0.188 0 0.812
#> SRR1643399 3 0.4399 0.905 0.188 0 0.812
#> SRR1643400 3 0.4399 0.905 0.188 0 0.812
#> SRR1643401 3 0.4399 0.905 0.188 0 0.812
#> SRR1643402 3 0.4399 0.905 0.188 0 0.812
#> SRR1643403 3 0.4399 0.905 0.188 0 0.812
#> SRR1643404 3 0.4399 0.905 0.188 0 0.812
#> SRR1643405 3 0.4399 0.905 0.188 0 0.812
#> SRR1643406 3 0.4399 0.905 0.188 0 0.812
#> SRR1643407 3 0.4399 0.905 0.188 0 0.812
#> SRR1643408 3 0.4399 0.905 0.188 0 0.812
#> SRR1643409 3 0.4399 0.905 0.188 0 0.812
#> SRR1643410 3 0.4399 0.905 0.188 0 0.812
#> SRR1643411 3 0.4399 0.905 0.188 0 0.812
#> SRR1643412 3 0.4399 0.905 0.188 0 0.812
#> SRR1643413 3 0.4399 0.905 0.188 0 0.812
#> SRR1643414 3 0.4399 0.905 0.188 0 0.812
#> SRR1643415 3 0.4399 0.905 0.188 0 0.812
#> SRR1643416 3 0.4399 0.905 0.188 0 0.812
#> SRR1643417 3 0.4399 0.905 0.188 0 0.812
#> SRR1643418 1 0.0000 0.988 1.000 0 0.000
#> SRR1643419 1 0.0000 0.988 1.000 0 0.000
#> SRR1643420 1 0.0000 0.988 1.000 0 0.000
#> SRR1643421 1 0.0000 0.988 1.000 0 0.000
#> SRR1643422 1 0.0000 0.988 1.000 0 0.000
#> SRR1643423 1 0.0000 0.988 1.000 0 0.000
#> SRR1643424 1 0.0000 0.988 1.000 0 0.000
#> SRR1643425 1 0.0000 0.988 1.000 0 0.000
#> SRR1643426 1 0.0000 0.988 1.000 0 0.000
#> SRR1643427 1 0.0000 0.988 1.000 0 0.000
#> SRR1643428 1 0.0000 0.988 1.000 0 0.000
#> SRR1643429 1 0.0000 0.988 1.000 0 0.000
#> SRR1643430 1 0.0000 0.988 1.000 0 0.000
#> SRR1643431 1 0.0000 0.988 1.000 0 0.000
#> SRR1643432 1 0.0000 0.988 1.000 0 0.000
#> SRR1643433 1 0.0000 0.988 1.000 0 0.000
#> SRR1643434 1 0.0000 0.988 1.000 0 0.000
#> SRR1643435 1 0.0000 0.988 1.000 0 0.000
#> SRR1643436 1 0.0000 0.988 1.000 0 0.000
#> SRR1643437 1 0.0000 0.988 1.000 0 0.000
#> SRR1643438 1 0.0000 0.988 1.000 0 0.000
#> SRR1643439 1 0.0000 0.988 1.000 0 0.000
#> SRR1643440 1 0.0000 0.988 1.000 0 0.000
#> SRR1643441 1 0.0000 0.988 1.000 0 0.000
#> SRR1643442 1 0.0000 0.988 1.000 0 0.000
#> SRR1643443 2 0.0000 1.000 0.000 1 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0.000
#> SRR1643505 2 0.0000 1.000 0.000 1 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.1302 0.877 0.956 0 0.044 0.000
#> SRR1643168 1 0.1302 0.877 0.956 0 0.044 0.000
#> SRR1643169 1 0.1302 0.877 0.956 0 0.044 0.000
#> SRR1643170 1 0.1302 0.877 0.956 0 0.044 0.000
#> SRR1643171 1 0.1389 0.877 0.952 0 0.048 0.000
#> SRR1643172 1 0.1389 0.877 0.952 0 0.048 0.000
#> SRR1643173 1 0.1389 0.877 0.952 0 0.048 0.000
#> SRR1643174 1 0.1389 0.877 0.952 0 0.048 0.000
#> SRR1643175 1 0.1406 0.869 0.960 0 0.016 0.024
#> SRR1643176 1 0.1406 0.869 0.960 0 0.016 0.024
#> SRR1643177 1 0.1406 0.869 0.960 0 0.016 0.024
#> SRR1643178 1 0.1406 0.869 0.960 0 0.016 0.024
#> SRR1643180 1 0.1389 0.877 0.952 0 0.048 0.000
#> SRR1643181 1 0.1389 0.877 0.952 0 0.048 0.000
#> SRR1643182 1 0.1389 0.877 0.952 0 0.048 0.000
#> SRR1643183 1 0.1389 0.877 0.952 0 0.048 0.000
#> SRR1643184 1 0.1389 0.877 0.952 0 0.048 0.000
#> SRR1643185 1 0.1389 0.877 0.952 0 0.048 0.000
#> SRR1643186 1 0.1389 0.877 0.952 0 0.048 0.000
#> SRR1643187 1 0.1042 0.864 0.972 0 0.020 0.008
#> SRR1643188 1 0.1042 0.864 0.972 0 0.020 0.008
#> SRR1643189 1 0.1042 0.864 0.972 0 0.020 0.008
#> SRR1643190 1 0.1042 0.864 0.972 0 0.020 0.008
#> SRR1643191 1 0.1389 0.877 0.952 0 0.048 0.000
#> SRR1643192 1 0.1389 0.877 0.952 0 0.048 0.000
#> SRR1643193 1 0.0804 0.873 0.980 0 0.008 0.012
#> SRR1643194 1 0.0804 0.873 0.980 0 0.008 0.012
#> SRR1643195 4 0.1743 0.960 0.056 0 0.004 0.940
#> SRR1643196 4 0.1743 0.960 0.056 0 0.004 0.940
#> SRR1643197 1 0.1389 0.877 0.952 0 0.048 0.000
#> SRR1643198 1 0.1389 0.877 0.952 0 0.048 0.000
#> SRR1643199 1 0.1302 0.877 0.956 0 0.044 0.000
#> SRR1643200 1 0.1302 0.877 0.956 0 0.044 0.000
#> SRR1643201 1 0.2654 0.813 0.888 0 0.004 0.108
#> SRR1643202 1 0.2654 0.813 0.888 0 0.004 0.108
#> SRR1643203 1 0.0469 0.877 0.988 0 0.012 0.000
#> SRR1643204 1 0.0469 0.877 0.988 0 0.012 0.000
#> SRR1643205 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643206 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643207 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643208 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643209 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643210 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643211 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643212 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643213 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643214 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643215 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643216 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643217 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643218 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643219 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643220 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643221 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643222 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643223 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643224 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643225 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643226 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643227 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643228 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643229 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643230 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643231 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643232 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643233 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643234 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643235 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643236 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643237 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643238 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643239 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643240 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643241 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643242 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643243 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643245 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643246 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643247 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643248 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643249 3 0.1211 1.000 0.040 0 0.960 0.000
#> SRR1643250 4 0.1118 0.973 0.036 0 0.000 0.964
#> SRR1643251 4 0.1118 0.973 0.036 0 0.000 0.964
#> SRR1643252 4 0.1118 0.973 0.036 0 0.000 0.964
#> SRR1643253 4 0.1118 0.973 0.036 0 0.000 0.964
#> SRR1643254 4 0.1118 0.973 0.036 0 0.000 0.964
#> SRR1643255 4 0.1118 0.973 0.036 0 0.000 0.964
#> SRR1643256 4 0.1118 0.973 0.036 0 0.000 0.964
#> SRR1643257 4 0.1118 0.973 0.036 0 0.000 0.964
#> SRR1643258 4 0.1118 0.973 0.036 0 0.000 0.964
#> SRR1643259 4 0.1118 0.973 0.036 0 0.000 0.964
#> SRR1643260 4 0.1118 0.973 0.036 0 0.000 0.964
#> SRR1643261 4 0.1118 0.973 0.036 0 0.000 0.964
#> SRR1643262 4 0.0921 0.976 0.028 0 0.000 0.972
#> SRR1643263 4 0.0921 0.976 0.028 0 0.000 0.972
#> SRR1643264 4 0.0921 0.976 0.028 0 0.000 0.972
#> SRR1643266 4 0.0921 0.976 0.028 0 0.000 0.972
#> SRR1643267 4 0.0921 0.976 0.028 0 0.000 0.972
#> SRR1643268 4 0.0921 0.976 0.028 0 0.000 0.972
#> SRR1643269 4 0.0921 0.976 0.028 0 0.000 0.972
#> SRR1643270 4 0.0921 0.976 0.028 0 0.000 0.972
#> SRR1643271 4 0.0921 0.976 0.028 0 0.000 0.972
#> SRR1643272 4 0.0921 0.976 0.028 0 0.000 0.972
#> SRR1643273 1 0.4872 0.672 0.728 0 0.028 0.244
#> SRR1643274 1 0.4872 0.672 0.728 0 0.028 0.244
#> SRR1643275 1 0.4872 0.672 0.728 0 0.028 0.244
#> SRR1643276 1 0.4872 0.672 0.728 0 0.028 0.244
#> SRR1643277 1 0.4872 0.672 0.728 0 0.028 0.244
#> SRR1643278 1 0.4872 0.672 0.728 0 0.028 0.244
#> SRR1643279 1 0.4872 0.672 0.728 0 0.028 0.244
#> SRR1643280 1 0.4872 0.672 0.728 0 0.028 0.244
#> SRR1643281 1 0.4872 0.672 0.728 0 0.028 0.244
#> SRR1643282 1 0.4872 0.672 0.728 0 0.028 0.244
#> SRR1643283 1 0.4872 0.672 0.728 0 0.028 0.244
#> SRR1643284 1 0.4872 0.672 0.728 0 0.028 0.244
#> SRR1643285 1 0.4872 0.672 0.728 0 0.028 0.244
#> SRR1643286 1 0.4872 0.672 0.728 0 0.028 0.244
#> SRR1643287 4 0.1833 0.955 0.024 0 0.032 0.944
#> SRR1643288 4 0.1833 0.955 0.024 0 0.032 0.944
#> SRR1643289 4 0.1833 0.955 0.024 0 0.032 0.944
#> SRR1643290 4 0.1833 0.955 0.024 0 0.032 0.944
#> SRR1643291 4 0.1833 0.955 0.024 0 0.032 0.944
#> SRR1643292 4 0.1833 0.955 0.024 0 0.032 0.944
#> SRR1643293 4 0.1833 0.955 0.024 0 0.032 0.944
#> SRR1643294 4 0.1833 0.955 0.024 0 0.032 0.944
#> SRR1643295 4 0.1833 0.955 0.024 0 0.032 0.944
#> SRR1643296 4 0.1833 0.955 0.024 0 0.032 0.944
#> SRR1643297 4 0.1833 0.955 0.024 0 0.032 0.944
#> SRR1643298 4 0.1833 0.955 0.024 0 0.032 0.944
#> SRR1643299 4 0.1833 0.955 0.024 0 0.032 0.944
#> SRR1643300 4 0.1833 0.955 0.024 0 0.032 0.944
#> SRR1643301 1 0.4948 0.324 0.560 0 0.000 0.440
#> SRR1643302 1 0.4948 0.324 0.560 0 0.000 0.440
#> SRR1643303 1 0.4948 0.324 0.560 0 0.000 0.440
#> SRR1643304 1 0.4948 0.324 0.560 0 0.000 0.440
#> SRR1643305 1 0.4925 0.354 0.572 0 0.000 0.428
#> SRR1643306 1 0.4948 0.324 0.560 0 0.000 0.440
#> SRR1643307 1 0.4948 0.324 0.560 0 0.000 0.440
#> SRR1643308 1 0.4948 0.324 0.560 0 0.000 0.440
#> SRR1643309 1 0.4948 0.324 0.560 0 0.000 0.440
#> SRR1643310 1 0.4948 0.324 0.560 0 0.000 0.440
#> SRR1643311 1 0.4948 0.324 0.560 0 0.000 0.440
#> SRR1643312 1 0.4948 0.324 0.560 0 0.000 0.440
#> SRR1643313 1 0.4948 0.324 0.560 0 0.000 0.440
#> SRR1643314 1 0.1182 0.875 0.968 0 0.016 0.016
#> SRR1643315 1 0.1182 0.875 0.968 0 0.016 0.016
#> SRR1643316 1 0.1182 0.875 0.968 0 0.016 0.016
#> SRR1643317 1 0.1182 0.875 0.968 0 0.016 0.016
#> SRR1643318 1 0.1182 0.875 0.968 0 0.016 0.016
#> SRR1643319 1 0.1059 0.876 0.972 0 0.016 0.012
#> SRR1643320 1 0.1182 0.875 0.968 0 0.016 0.016
#> SRR1643321 1 0.1182 0.875 0.968 0 0.016 0.016
#> SRR1643322 1 0.1182 0.875 0.968 0 0.016 0.016
#> SRR1643323 1 0.1182 0.875 0.968 0 0.016 0.016
#> SRR1643324 1 0.1182 0.875 0.968 0 0.016 0.016
#> SRR1643325 1 0.1182 0.875 0.968 0 0.016 0.016
#> SRR1643326 1 0.1182 0.875 0.968 0 0.016 0.016
#> SRR1643327 1 0.1182 0.875 0.968 0 0.016 0.016
#> SRR1643328 1 0.1940 0.873 0.924 0 0.076 0.000
#> SRR1643329 1 0.1940 0.873 0.924 0 0.076 0.000
#> SRR1643330 1 0.1940 0.873 0.924 0 0.076 0.000
#> SRR1643331 1 0.1940 0.873 0.924 0 0.076 0.000
#> SRR1643332 1 0.1940 0.873 0.924 0 0.076 0.000
#> SRR1643333 1 0.1940 0.873 0.924 0 0.076 0.000
#> SRR1643334 1 0.1940 0.873 0.924 0 0.076 0.000
#> SRR1643335 1 0.1940 0.873 0.924 0 0.076 0.000
#> SRR1643336 1 0.1940 0.873 0.924 0 0.076 0.000
#> SRR1643337 1 0.1940 0.873 0.924 0 0.076 0.000
#> SRR1643338 1 0.1940 0.873 0.924 0 0.076 0.000
#> SRR1643339 1 0.1940 0.873 0.924 0 0.076 0.000
#> SRR1643340 1 0.1940 0.873 0.924 0 0.076 0.000
#> SRR1643341 1 0.1940 0.873 0.924 0 0.076 0.000
#> SRR1643342 1 0.1940 0.873 0.924 0 0.076 0.000
#> SRR1643343 1 0.2329 0.874 0.916 0 0.072 0.012
#> SRR1643344 1 0.2329 0.874 0.916 0 0.072 0.012
#> SRR1643345 1 0.2329 0.874 0.916 0 0.072 0.012
#> SRR1643346 1 0.2329 0.874 0.916 0 0.072 0.012
#> SRR1643347 1 0.2329 0.874 0.916 0 0.072 0.012
#> SRR1643348 1 0.2329 0.874 0.916 0 0.072 0.012
#> SRR1643349 1 0.2329 0.874 0.916 0 0.072 0.012
#> SRR1643350 1 0.2329 0.874 0.916 0 0.072 0.012
#> SRR1643351 1 0.2329 0.874 0.916 0 0.072 0.012
#> SRR1643352 1 0.2329 0.874 0.916 0 0.072 0.012
#> SRR1643353 1 0.2329 0.874 0.916 0 0.072 0.012
#> SRR1643354 1 0.2329 0.874 0.916 0 0.072 0.012
#> SRR1643355 1 0.2329 0.874 0.916 0 0.072 0.012
#> SRR1643356 1 0.2329 0.874 0.916 0 0.072 0.012
#> SRR1643357 1 0.2329 0.874 0.916 0 0.072 0.012
#> SRR1643358 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643359 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643360 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643361 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643362 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643363 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643364 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643365 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643366 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643367 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643368 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643369 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643370 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643371 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643372 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643373 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643374 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643375 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643376 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643377 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643378 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643379 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643380 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643381 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643382 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643383 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643384 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643385 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643386 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643387 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643388 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643389 4 0.0707 0.978 0.020 0 0.000 0.980
#> SRR1643390 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643391 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643392 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643393 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643394 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643395 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643396 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643397 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643398 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643399 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643400 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643401 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643402 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643403 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643404 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643405 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643406 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643407 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643408 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643409 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643410 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643411 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643412 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643413 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643414 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643415 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643416 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643417 1 0.1716 0.876 0.936 0 0.064 0.000
#> SRR1643418 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643419 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643420 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643421 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643422 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643423 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643424 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643425 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643426 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643427 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643428 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643429 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643430 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643431 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643432 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643433 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643434 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643435 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643436 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643437 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643438 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643439 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643440 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643441 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643442 4 0.0707 0.969 0.000 0 0.020 0.980
#> SRR1643443 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643505 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0.000 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 1 0.3081 0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643168 1 0.3081 0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643169 1 0.3081 0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643170 1 0.3081 0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643171 1 0.3039 0.7946 0.836 0.000 0.012 0.000 0.152
#> SRR1643172 1 0.3039 0.7946 0.836 0.000 0.012 0.000 0.152
#> SRR1643173 1 0.3039 0.7946 0.836 0.000 0.012 0.000 0.152
#> SRR1643174 1 0.3039 0.7946 0.836 0.000 0.012 0.000 0.152
#> SRR1643175 1 0.5384 0.7103 0.664 0.000 0.000 0.140 0.196
#> SRR1643176 1 0.5384 0.7103 0.664 0.000 0.000 0.140 0.196
#> SRR1643177 1 0.5384 0.7103 0.664 0.000 0.000 0.140 0.196
#> SRR1643178 1 0.5384 0.7103 0.664 0.000 0.000 0.140 0.196
#> SRR1643180 1 0.3081 0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643181 1 0.3081 0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643182 1 0.3081 0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643183 1 0.3081 0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643184 1 0.3081 0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643185 1 0.3081 0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643186 1 0.3081 0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643187 1 0.3123 0.7981 0.812 0.000 0.004 0.000 0.184
#> SRR1643188 1 0.3123 0.7981 0.812 0.000 0.004 0.000 0.184
#> SRR1643189 1 0.3123 0.7981 0.812 0.000 0.004 0.000 0.184
#> SRR1643190 1 0.3123 0.7981 0.812 0.000 0.004 0.000 0.184
#> SRR1643191 1 0.3039 0.7946 0.836 0.000 0.012 0.000 0.152
#> SRR1643192 1 0.3039 0.7946 0.836 0.000 0.012 0.000 0.152
#> SRR1643193 1 0.3421 0.7798 0.788 0.000 0.000 0.008 0.204
#> SRR1643194 1 0.3421 0.7798 0.788 0.000 0.000 0.008 0.204
#> SRR1643195 4 0.4639 0.6758 0.056 0.000 0.000 0.708 0.236
#> SRR1643196 4 0.4639 0.6758 0.056 0.000 0.000 0.708 0.236
#> SRR1643197 1 0.2909 0.7973 0.848 0.000 0.012 0.000 0.140
#> SRR1643198 1 0.2909 0.7973 0.848 0.000 0.012 0.000 0.140
#> SRR1643199 1 0.3081 0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643200 1 0.3081 0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643201 1 0.5139 0.6787 0.648 0.000 0.000 0.072 0.280
#> SRR1643202 1 0.5139 0.6787 0.648 0.000 0.000 0.072 0.280
#> SRR1643203 1 0.2690 0.7957 0.844 0.000 0.000 0.000 0.156
#> SRR1643204 1 0.2690 0.7957 0.844 0.000 0.000 0.000 0.156
#> SRR1643205 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643206 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643207 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643208 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643209 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643210 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643211 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643212 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643213 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643214 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643215 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643216 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643217 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643218 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643219 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643220 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643221 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643222 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643223 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643224 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643225 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643226 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643227 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643228 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643229 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643230 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643231 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643232 3 0.0451 0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643233 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643234 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643235 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643236 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643237 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643238 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643239 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643240 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643241 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643242 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643243 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643245 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643246 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643247 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643248 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643249 3 0.0290 0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643250 4 0.3081 0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643251 4 0.3081 0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643252 4 0.3081 0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643253 4 0.3081 0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643254 4 0.3081 0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643255 4 0.3081 0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643256 4 0.3081 0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643257 4 0.3081 0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643258 4 0.3081 0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643259 4 0.3081 0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643260 4 0.3081 0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643261 4 0.3081 0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643262 4 0.2516 0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643263 4 0.2516 0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643264 4 0.2516 0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643266 4 0.2516 0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643267 4 0.2516 0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643268 4 0.2516 0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643269 4 0.2516 0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643270 4 0.2516 0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643271 4 0.2516 0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643272 4 0.2516 0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643273 1 0.6636 0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643274 1 0.6636 0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643275 1 0.6636 0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643276 1 0.6636 0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643277 1 0.6636 0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643278 1 0.6636 0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643279 1 0.6636 0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643280 1 0.6636 0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643281 1 0.6636 0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643282 1 0.6636 0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643283 1 0.6636 0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643284 1 0.6636 0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643285 1 0.6636 0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643286 1 0.6636 0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643287 4 0.4420 0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643288 4 0.4420 0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643289 4 0.4420 0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643290 4 0.4420 0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643291 4 0.4420 0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643292 4 0.4420 0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643293 4 0.4420 0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643294 4 0.4420 0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643295 4 0.4420 0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643296 4 0.4420 0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643297 4 0.4420 0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643298 4 0.4420 0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643299 4 0.4420 0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643300 4 0.4420 0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643301 4 0.6493 0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643302 4 0.6493 0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643303 4 0.6493 0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643304 4 0.6493 0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643305 4 0.6477 0.0586 0.392 0.000 0.000 0.424 0.184
#> SRR1643306 4 0.6493 0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643307 4 0.6493 0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643308 4 0.6493 0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643309 4 0.6493 0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643310 4 0.6493 0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643311 4 0.6493 0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643312 4 0.6493 0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643313 4 0.6493 0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643314 1 0.3507 0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643315 1 0.3507 0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643316 1 0.3507 0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643317 1 0.3507 0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643318 1 0.3507 0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643319 1 0.3507 0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643320 1 0.3507 0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643321 1 0.3507 0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643322 1 0.3507 0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643323 1 0.3507 0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643324 1 0.3507 0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643325 1 0.3507 0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643326 1 0.3507 0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643327 1 0.3507 0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643328 1 0.0693 0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643329 1 0.0693 0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643330 1 0.0693 0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643331 1 0.0693 0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643332 1 0.0693 0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643333 1 0.0693 0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643334 1 0.0693 0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643335 1 0.0693 0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643336 1 0.0693 0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643337 1 0.0693 0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643338 1 0.0693 0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643339 1 0.0693 0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643340 1 0.0693 0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643341 1 0.0693 0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643342 1 0.0693 0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643343 1 0.5195 0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643344 1 0.5195 0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643345 1 0.5195 0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643346 1 0.5195 0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643347 1 0.5195 0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643348 1 0.5195 0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643349 1 0.5195 0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643350 1 0.5195 0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643351 1 0.5195 0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643352 1 0.5195 0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643353 1 0.5195 0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643354 1 0.5195 0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643355 1 0.5195 0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643356 1 0.5195 0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643357 1 0.5195 0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643358 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643359 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643360 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643361 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643362 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643363 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643364 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643365 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643366 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643367 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643368 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643369 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643370 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643371 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643372 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643373 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643374 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643375 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643376 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643377 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643378 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643379 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643380 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643381 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643382 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643383 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643384 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643385 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643386 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643387 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643388 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643389 4 0.0000 0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643390 1 0.1809 0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643391 1 0.1809 0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643392 1 0.1809 0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643393 1 0.1809 0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643394 1 0.1809 0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643395 1 0.1809 0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643396 1 0.1809 0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643397 1 0.1809 0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643398 1 0.1809 0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643399 1 0.1809 0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643400 1 0.1809 0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643401 1 0.1809 0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643402 1 0.1809 0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643403 1 0.1809 0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643404 1 0.1809 0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643405 1 0.1942 0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643406 1 0.1942 0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643407 1 0.1942 0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643408 1 0.1942 0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643409 1 0.1942 0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643410 1 0.1942 0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643411 1 0.1942 0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643412 1 0.1942 0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643413 1 0.1942 0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643414 1 0.1942 0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643415 1 0.1942 0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643416 1 0.1942 0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643417 1 0.1942 0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643418 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643419 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643420 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643421 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643422 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643423 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643424 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643425 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643426 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643427 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643428 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643429 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643430 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643431 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643432 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643433 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643434 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643435 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643436 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643437 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643438 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643439 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643440 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643441 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643442 4 0.4196 0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643443 2 0.1410 0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643444 2 0.1410 0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643445 2 0.1410 0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643446 2 0.1410 0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643447 2 0.1410 0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643448 2 0.1410 0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643449 2 0.1410 0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643450 2 0.1410 0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643451 2 0.1410 0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643452 2 0.1410 0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643453 2 0.1410 0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643454 2 0.1410 0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643455 2 0.1410 0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643456 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643457 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643458 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643459 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643460 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643461 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643462 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643463 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643464 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643466 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643467 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643468 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643469 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643470 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643471 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643472 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643473 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643474 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643475 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643477 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643478 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643479 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643480 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643481 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643482 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643483 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643484 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643485 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643486 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643487 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643488 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643489 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643490 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643491 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643492 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643493 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643494 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643495 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643496 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643497 2 0.0290 0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643498 2 0.0290 0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643499 2 0.0290 0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643500 2 0.0290 0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643501 2 0.0290 0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643502 2 0.0290 0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643503 2 0.0290 0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643504 2 0.0290 0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643505 2 0.0880 0.9733 0.000 0.968 0.000 0.000 0.032
#> SRR1643506 2 0.0290 0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643507 2 0.0290 0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643508 2 0.0290 0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643509 2 0.0290 0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643510 2 0.0290 0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643511 2 0.0290 0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643512 2 0.0290 0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643513 2 0.0290 0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643531 2 0.1410 0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643532 2 0.1410 0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643533 2 0.1410 0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643534 2 0.1410 0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643535 2 0.1410 0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643536 2 0.1410 0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643537 2 0.1410 0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643538 2 0.1410 0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643539 2 0.1410 0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643540 2 0.1410 0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643541 2 0.1410 0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643542 2 0.1410 0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643543 2 0.1410 0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643544 2 0.1410 0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643514 2 0.0963 0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643515 2 0.0963 0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643516 2 0.0963 0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643517 2 0.0963 0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643518 2 0.0963 0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643519 2 0.0963 0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643520 2 0.0963 0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643521 2 0.0963 0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643522 2 0.0963 0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643523 2 0.0963 0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643524 2 0.0963 0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643525 2 0.0963 0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643526 2 0.0963 0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643527 2 0.0963 0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643528 2 0.0963 0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643529 2 0.0963 0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643530 2 0.0963 0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643545 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643546 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643547 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643548 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643549 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643550 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643551 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643552 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643553 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643554 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643555 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643556 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643558 2 0.0609 0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643559 2 0.1043 0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643560 2 0.1043 0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643561 2 0.1043 0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643562 2 0.1043 0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643563 2 0.1043 0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643564 2 0.1043 0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643565 2 0.1043 0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643566 2 0.1043 0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643567 2 0.1043 0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643568 2 0.1043 0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643569 2 0.1043 0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643570 2 0.1043 0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643571 2 0.1043 0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643572 2 0.1043 0.9715 0.000 0.960 0.000 0.000 0.040
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 1 0.0146 0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643168 1 0.0146 0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643169 1 0.0146 0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643170 1 0.0146 0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643171 1 0.0260 0.563 0.992 0.000 0.008 0.000 0.000 0.000
#> SRR1643172 1 0.0260 0.563 0.992 0.000 0.008 0.000 0.000 0.000
#> SRR1643173 1 0.0260 0.563 0.992 0.000 0.008 0.000 0.000 0.000
#> SRR1643174 1 0.0260 0.563 0.992 0.000 0.008 0.000 0.000 0.000
#> SRR1643175 1 0.3830 0.363 0.788 0.000 0.000 0.148 0.020 0.044
#> SRR1643176 1 0.3830 0.363 0.788 0.000 0.000 0.148 0.020 0.044
#> SRR1643177 1 0.3830 0.363 0.788 0.000 0.000 0.148 0.020 0.044
#> SRR1643178 1 0.3830 0.363 0.788 0.000 0.000 0.148 0.020 0.044
#> SRR1643180 1 0.0146 0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643181 1 0.0146 0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643182 1 0.0146 0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643183 1 0.0146 0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643184 1 0.0146 0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643185 1 0.0146 0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643186 1 0.0146 0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643187 1 0.2146 0.514 0.880 0.000 0.000 0.000 0.004 0.116
#> SRR1643188 1 0.2146 0.514 0.880 0.000 0.000 0.000 0.004 0.116
#> SRR1643189 1 0.2146 0.514 0.880 0.000 0.000 0.000 0.004 0.116
#> SRR1643190 1 0.2146 0.514 0.880 0.000 0.000 0.000 0.004 0.116
#> SRR1643191 1 0.0260 0.563 0.992 0.000 0.008 0.000 0.000 0.000
#> SRR1643192 1 0.0260 0.563 0.992 0.000 0.008 0.000 0.000 0.000
#> SRR1643193 1 0.1732 0.498 0.920 0.000 0.004 0.000 0.004 0.072
#> SRR1643194 1 0.1674 0.502 0.924 0.000 0.004 0.000 0.004 0.068
#> SRR1643195 4 0.6840 0.378 0.172 0.000 0.000 0.500 0.112 0.216
#> SRR1643196 4 0.6840 0.378 0.172 0.000 0.000 0.500 0.112 0.216
#> SRR1643197 1 0.0260 0.563 0.992 0.000 0.008 0.000 0.000 0.000
#> SRR1643198 1 0.0260 0.563 0.992 0.000 0.008 0.000 0.000 0.000
#> SRR1643199 1 0.0146 0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643200 1 0.0146 0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643201 1 0.3965 0.353 0.792 0.000 0.000 0.024 0.076 0.108
#> SRR1643202 1 0.3965 0.353 0.792 0.000 0.000 0.024 0.076 0.108
#> SRR1643203 1 0.0260 0.561 0.992 0.000 0.000 0.000 0.000 0.008
#> SRR1643204 1 0.0260 0.561 0.992 0.000 0.000 0.000 0.000 0.008
#> SRR1643205 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643206 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643207 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643208 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643209 3 0.0146 0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643210 3 0.0146 0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643211 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643212 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643213 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643214 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643215 3 0.0146 0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643216 3 0.0146 0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643217 3 0.0146 0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643218 3 0.0146 0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643219 3 0.0146 0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643220 3 0.0146 0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643221 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643222 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643223 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643224 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643225 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643226 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643227 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643228 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643229 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643230 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643231 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643232 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643233 3 0.0146 0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643234 3 0.0146 0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643235 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643236 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643237 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643238 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643239 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643240 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643241 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643242 3 0.0146 0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643243 3 0.0146 0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643245 3 0.0146 0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643246 3 0.0146 0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643247 3 0.0146 0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643248 3 0.0000 0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643249 3 0.0146 0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643250 4 0.4773 0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643251 4 0.4773 0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643252 4 0.4773 0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643253 4 0.4773 0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643254 4 0.4773 0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643255 4 0.4773 0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643256 4 0.4773 0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643257 4 0.4773 0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643258 4 0.4773 0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643259 4 0.4773 0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643260 4 0.4773 0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643261 4 0.4773 0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643262 4 0.4490 0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643263 4 0.4490 0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643264 4 0.4490 0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643266 4 0.4490 0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643267 4 0.4490 0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643268 4 0.4490 0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643269 4 0.4490 0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643270 4 0.4490 0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643271 4 0.4490 0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643272 4 0.4490 0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643273 6 0.7199 0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643274 6 0.7199 0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643275 6 0.7199 0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643276 6 0.7199 0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643277 6 0.7199 0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643278 6 0.7199 0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643279 6 0.7199 0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643280 6 0.7199 0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643281 6 0.7199 0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643282 6 0.7199 0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643283 6 0.7199 0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643284 6 0.7199 0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643285 6 0.7199 0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643286 6 0.7199 0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643287 5 0.5611 0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643288 5 0.5611 0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643289 5 0.5611 0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643290 5 0.5611 0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643291 5 0.5611 0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643292 5 0.5611 0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643293 5 0.5611 0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643294 5 0.5611 0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643295 5 0.5611 0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643296 5 0.5611 0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643297 5 0.5611 0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643298 5 0.5611 0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643299 5 0.5611 0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643300 5 0.5611 0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643301 6 0.7325 0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643302 6 0.7325 0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643303 6 0.7325 0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643304 6 0.7325 0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643305 6 0.7325 0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643306 6 0.7325 0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643307 6 0.7325 0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643308 6 0.7325 0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643309 6 0.7325 0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643310 6 0.7325 0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643311 6 0.7325 0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643312 6 0.7325 0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643313 6 0.7325 0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643314 1 0.6102 0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643315 1 0.6102 0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643316 1 0.6102 0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643317 1 0.6102 0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643318 1 0.6102 0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643319 1 0.6102 0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643320 1 0.6102 0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643321 1 0.6102 0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643322 1 0.6102 0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643323 1 0.6102 0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643324 1 0.6102 0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643325 1 0.6102 0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643326 1 0.6102 0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643327 1 0.6102 0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643328 1 0.4174 0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643329 1 0.4174 0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643330 1 0.4174 0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643331 1 0.4174 0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643332 1 0.4174 0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643333 1 0.4174 0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643334 1 0.4089 0.470 0.632 0.000 0.012 0.000 0.004 0.352
#> SRR1643335 1 0.4089 0.470 0.632 0.000 0.012 0.000 0.004 0.352
#> SRR1643336 1 0.4174 0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643337 1 0.4174 0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643338 1 0.4174 0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643339 1 0.4174 0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643340 1 0.4174 0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643341 1 0.4174 0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643342 1 0.4174 0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643343 6 0.6373 0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643344 6 0.6373 0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643345 6 0.6373 0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643346 6 0.6373 0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643347 6 0.6373 0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643348 6 0.6373 0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643349 6 0.6373 0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643350 6 0.6373 0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643351 6 0.6373 0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643352 6 0.6373 0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643353 6 0.6373 0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643354 6 0.6373 0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643355 6 0.6373 0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643356 6 0.6373 0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643357 6 0.6373 0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643358 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643359 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643360 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643361 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643362 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643363 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643364 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643365 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643366 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643367 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643368 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643369 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643370 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643371 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643372 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643373 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643374 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643375 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643376 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643377 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643378 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643379 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643380 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643381 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643382 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643383 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643384 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643385 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643386 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643387 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643388 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643389 4 0.0000 0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643390 1 0.4730 0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643391 1 0.4730 0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643392 1 0.4730 0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643393 1 0.4730 0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643394 1 0.4730 0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643395 1 0.4730 0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643396 1 0.4730 0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643397 1 0.4730 0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643398 1 0.4730 0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643399 1 0.4730 0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643400 1 0.4730 0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643401 1 0.4730 0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643402 1 0.4730 0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643403 1 0.4730 0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643404 1 0.4730 0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643405 6 0.4731 -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643406 6 0.4731 -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643407 6 0.4731 -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643408 6 0.4731 -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643409 6 0.4731 -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643410 6 0.4731 -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643411 6 0.4731 -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643412 6 0.4731 -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643413 6 0.4731 -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643414 6 0.4731 -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643415 6 0.4731 -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643416 6 0.4731 -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643417 6 0.4731 -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643418 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643419 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643420 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643421 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643422 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643423 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643424 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643425 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643426 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643427 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643428 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643429 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643430 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643431 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643432 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643433 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643434 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643435 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643436 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643437 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643438 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643439 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643440 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643441 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643442 5 0.3828 0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643443 2 0.2554 0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643444 2 0.2554 0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643445 2 0.2554 0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643446 2 0.2554 0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643447 2 0.2554 0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643448 2 0.2554 0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643449 2 0.2554 0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643450 2 0.2554 0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643451 2 0.2554 0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643452 2 0.2554 0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643453 2 0.2554 0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643454 2 0.2554 0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643455 2 0.2554 0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643456 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643457 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643458 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643459 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643460 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643461 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643462 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643463 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643464 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643466 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643467 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643468 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643469 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643470 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643471 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643472 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643473 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643474 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643475 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643477 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643478 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643479 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643480 2 0.0405 0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643481 2 0.0146 0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643482 2 0.0146 0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643483 2 0.0146 0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643484 2 0.0146 0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643485 2 0.0146 0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643486 2 0.0146 0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643487 2 0.0146 0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643488 2 0.0146 0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643489 2 0.0146 0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643490 2 0.0146 0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643491 2 0.0146 0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643492 2 0.0146 0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643493 2 0.0146 0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643494 2 0.0146 0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643495 2 0.0146 0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643496 2 0.0146 0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643497 2 0.0806 0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643498 2 0.0806 0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643499 2 0.0806 0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643500 2 0.0806 0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643501 2 0.0806 0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643502 2 0.0806 0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643503 2 0.0806 0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643504 2 0.0806 0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643505 2 0.1480 0.955 0.000 0.940 0.000 0.000 0.040 0.020
#> SRR1643506 2 0.0806 0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643507 2 0.0806 0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643508 2 0.0806 0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643509 2 0.0806 0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643510 2 0.0806 0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643511 2 0.0806 0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643512 2 0.0806 0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643513 2 0.0806 0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643531 2 0.2433 0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643532 2 0.2433 0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643533 2 0.2433 0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643534 2 0.2433 0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643535 2 0.2433 0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643536 2 0.2433 0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643537 2 0.2433 0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643538 2 0.2433 0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643539 2 0.2433 0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643540 2 0.2433 0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643541 2 0.2433 0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643542 2 0.2433 0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643543 2 0.2433 0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643544 2 0.2433 0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643514 2 0.1789 0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643515 2 0.1789 0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643516 2 0.1789 0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643517 2 0.1789 0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643518 2 0.1789 0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643519 2 0.1789 0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643520 2 0.1789 0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643521 2 0.1789 0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643522 2 0.1789 0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643523 2 0.1789 0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643524 2 0.1789 0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643525 2 0.1789 0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643526 2 0.1789 0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643527 2 0.1789 0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643528 2 0.1789 0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643529 2 0.1789 0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643530 2 0.1789 0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643545 2 0.0260 0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643546 2 0.0260 0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643547 2 0.0260 0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643548 2 0.0260 0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643549 2 0.0260 0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643550 2 0.0260 0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643551 2 0.0260 0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643552 2 0.0260 0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643553 2 0.0260 0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643554 2 0.0260 0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643555 2 0.0260 0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643556 2 0.0260 0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643558 2 0.0260 0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643559 2 0.2119 0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643560 2 0.2119 0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643561 2 0.2119 0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643562 2 0.2119 0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643563 2 0.2119 0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643564 2 0.2119 0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643565 2 0.2119 0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643566 2 0.2119 0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643567 2 0.2119 0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643568 2 0.2119 0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643569 2 0.2119 0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643570 2 0.2119 0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643571 2 0.2119 0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643572 2 0.2119 0.947 0.000 0.904 0.000 0.000 0.060 0.036
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["CV", "pam"]
# you can also extract it by
# res = res_list["CV:pam"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'CV' method.
#> Subgroups are detected by 'pam' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 3.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.4350 0.566 0.566
#> 3 3 1.000 0.987 0.987 0.2995 0.874 0.777
#> 4 4 0.726 0.709 0.779 0.2056 0.846 0.649
#> 5 5 0.798 0.815 0.902 0.0830 0.836 0.518
#> 6 6 0.809 0.836 0.868 0.0726 0.972 0.878
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 3
#> attr(,"optional")
#> [1] 2
There is also optional best \(k\) = 2 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.0424 0.982 0.992 0 0.008
#> SRR1643168 1 0.0424 0.982 0.992 0 0.008
#> SRR1643169 1 0.0424 0.982 0.992 0 0.008
#> SRR1643170 1 0.0424 0.982 0.992 0 0.008
#> SRR1643171 1 0.0424 0.982 0.992 0 0.008
#> SRR1643172 1 0.0424 0.982 0.992 0 0.008
#> SRR1643173 1 0.0424 0.982 0.992 0 0.008
#> SRR1643174 1 0.0424 0.982 0.992 0 0.008
#> SRR1643175 1 0.0424 0.982 0.992 0 0.008
#> SRR1643176 1 0.0424 0.982 0.992 0 0.008
#> SRR1643177 1 0.0424 0.982 0.992 0 0.008
#> SRR1643178 1 0.0424 0.982 0.992 0 0.008
#> SRR1643180 1 0.0424 0.982 0.992 0 0.008
#> SRR1643181 1 0.0424 0.982 0.992 0 0.008
#> SRR1643182 1 0.0424 0.982 0.992 0 0.008
#> SRR1643183 1 0.0424 0.982 0.992 0 0.008
#> SRR1643184 1 0.0424 0.982 0.992 0 0.008
#> SRR1643185 1 0.0424 0.982 0.992 0 0.008
#> SRR1643186 1 0.0424 0.982 0.992 0 0.008
#> SRR1643187 1 0.0424 0.982 0.992 0 0.008
#> SRR1643188 1 0.0424 0.982 0.992 0 0.008
#> SRR1643189 1 0.0424 0.982 0.992 0 0.008
#> SRR1643190 1 0.0424 0.982 0.992 0 0.008
#> SRR1643191 1 0.0424 0.982 0.992 0 0.008
#> SRR1643192 1 0.0424 0.982 0.992 0 0.008
#> SRR1643193 1 0.0424 0.982 0.992 0 0.008
#> SRR1643194 1 0.0424 0.982 0.992 0 0.008
#> SRR1643195 1 0.0424 0.982 0.992 0 0.008
#> SRR1643196 1 0.0424 0.982 0.992 0 0.008
#> SRR1643197 1 0.0424 0.982 0.992 0 0.008
#> SRR1643198 1 0.0424 0.982 0.992 0 0.008
#> SRR1643199 1 0.0424 0.982 0.992 0 0.008
#> SRR1643200 1 0.0424 0.982 0.992 0 0.008
#> SRR1643201 1 0.0424 0.982 0.992 0 0.008
#> SRR1643202 1 0.0424 0.982 0.992 0 0.008
#> SRR1643203 1 0.0424 0.982 0.992 0 0.008
#> SRR1643204 1 0.0424 0.982 0.992 0 0.008
#> SRR1643205 3 0.1031 0.998 0.024 0 0.976
#> SRR1643206 3 0.1031 0.998 0.024 0 0.976
#> SRR1643207 3 0.1031 0.998 0.024 0 0.976
#> SRR1643208 3 0.1031 0.998 0.024 0 0.976
#> SRR1643209 3 0.1031 0.998 0.024 0 0.976
#> SRR1643210 3 0.1031 0.998 0.024 0 0.976
#> SRR1643211 3 0.1031 0.998 0.024 0 0.976
#> SRR1643212 3 0.1031 0.998 0.024 0 0.976
#> SRR1643213 3 0.1031 0.998 0.024 0 0.976
#> SRR1643214 3 0.1031 0.998 0.024 0 0.976
#> SRR1643215 3 0.1031 0.998 0.024 0 0.976
#> SRR1643216 3 0.1031 0.998 0.024 0 0.976
#> SRR1643217 3 0.1031 0.998 0.024 0 0.976
#> SRR1643218 3 0.1031 0.998 0.024 0 0.976
#> SRR1643219 3 0.1031 0.998 0.024 0 0.976
#> SRR1643220 3 0.1031 0.998 0.024 0 0.976
#> SRR1643221 3 0.1031 0.998 0.024 0 0.976
#> SRR1643222 3 0.1031 0.998 0.024 0 0.976
#> SRR1643223 3 0.1031 0.998 0.024 0 0.976
#> SRR1643224 3 0.1031 0.998 0.024 0 0.976
#> SRR1643225 3 0.1031 0.998 0.024 0 0.976
#> SRR1643226 3 0.1031 0.998 0.024 0 0.976
#> SRR1643227 3 0.1031 0.998 0.024 0 0.976
#> SRR1643228 3 0.1031 0.998 0.024 0 0.976
#> SRR1643229 3 0.1031 0.998 0.024 0 0.976
#> SRR1643230 3 0.1031 0.998 0.024 0 0.976
#> SRR1643231 3 0.1031 0.998 0.024 0 0.976
#> SRR1643232 3 0.1031 0.998 0.024 0 0.976
#> SRR1643233 3 0.1031 0.998 0.024 0 0.976
#> SRR1643234 3 0.1031 0.998 0.024 0 0.976
#> SRR1643235 3 0.1031 0.998 0.024 0 0.976
#> SRR1643236 3 0.1031 0.998 0.024 0 0.976
#> SRR1643237 3 0.1031 0.998 0.024 0 0.976
#> SRR1643238 3 0.1031 0.998 0.024 0 0.976
#> SRR1643239 3 0.1031 0.998 0.024 0 0.976
#> SRR1643240 3 0.1031 0.998 0.024 0 0.976
#> SRR1643241 3 0.1031 0.998 0.024 0 0.976
#> SRR1643242 3 0.1031 0.998 0.024 0 0.976
#> SRR1643243 3 0.1031 0.998 0.024 0 0.976
#> SRR1643245 3 0.1031 0.998 0.024 0 0.976
#> SRR1643246 3 0.1031 0.998 0.024 0 0.976
#> SRR1643247 3 0.1031 0.998 0.024 0 0.976
#> SRR1643248 3 0.1031 0.998 0.024 0 0.976
#> SRR1643249 3 0.3116 0.893 0.108 0 0.892
#> SRR1643250 1 0.1031 0.978 0.976 0 0.024
#> SRR1643251 1 0.0747 0.980 0.984 0 0.016
#> SRR1643252 1 0.1031 0.978 0.976 0 0.024
#> SRR1643253 1 0.1031 0.978 0.976 0 0.024
#> SRR1643254 1 0.1031 0.978 0.976 0 0.024
#> SRR1643255 1 0.0892 0.979 0.980 0 0.020
#> SRR1643256 1 0.0592 0.980 0.988 0 0.012
#> SRR1643257 1 0.0892 0.979 0.980 0 0.020
#> SRR1643258 1 0.1031 0.978 0.976 0 0.024
#> SRR1643259 1 0.0747 0.980 0.984 0 0.016
#> SRR1643260 1 0.1031 0.978 0.976 0 0.024
#> SRR1643261 1 0.0892 0.979 0.980 0 0.020
#> SRR1643262 1 0.1031 0.978 0.976 0 0.024
#> SRR1643263 1 0.1031 0.978 0.976 0 0.024
#> SRR1643264 1 0.1031 0.978 0.976 0 0.024
#> SRR1643266 1 0.1031 0.978 0.976 0 0.024
#> SRR1643267 1 0.1031 0.978 0.976 0 0.024
#> SRR1643268 1 0.1031 0.978 0.976 0 0.024
#> SRR1643269 1 0.1031 0.978 0.976 0 0.024
#> SRR1643270 1 0.1031 0.978 0.976 0 0.024
#> SRR1643271 1 0.1031 0.978 0.976 0 0.024
#> SRR1643272 1 0.1031 0.978 0.976 0 0.024
#> SRR1643273 1 0.0424 0.982 0.992 0 0.008
#> SRR1643274 1 0.0424 0.982 0.992 0 0.008
#> SRR1643275 1 0.0424 0.982 0.992 0 0.008
#> SRR1643276 1 0.0424 0.982 0.992 0 0.008
#> SRR1643277 1 0.0424 0.982 0.992 0 0.008
#> SRR1643278 1 0.0424 0.982 0.992 0 0.008
#> SRR1643279 1 0.0424 0.982 0.992 0 0.008
#> SRR1643280 1 0.0424 0.982 0.992 0 0.008
#> SRR1643281 1 0.0424 0.982 0.992 0 0.008
#> SRR1643282 1 0.0424 0.982 0.992 0 0.008
#> SRR1643283 1 0.0424 0.982 0.992 0 0.008
#> SRR1643284 1 0.0424 0.982 0.992 0 0.008
#> SRR1643285 1 0.0424 0.982 0.992 0 0.008
#> SRR1643286 1 0.0424 0.982 0.992 0 0.008
#> SRR1643287 1 0.1031 0.978 0.976 0 0.024
#> SRR1643288 1 0.1031 0.978 0.976 0 0.024
#> SRR1643289 1 0.1031 0.978 0.976 0 0.024
#> SRR1643290 1 0.1031 0.978 0.976 0 0.024
#> SRR1643291 1 0.1031 0.978 0.976 0 0.024
#> SRR1643292 1 0.1031 0.978 0.976 0 0.024
#> SRR1643293 1 0.1031 0.978 0.976 0 0.024
#> SRR1643294 1 0.1031 0.978 0.976 0 0.024
#> SRR1643295 1 0.1031 0.978 0.976 0 0.024
#> SRR1643296 1 0.1031 0.978 0.976 0 0.024
#> SRR1643297 1 0.1031 0.978 0.976 0 0.024
#> SRR1643298 1 0.1031 0.978 0.976 0 0.024
#> SRR1643299 1 0.1031 0.978 0.976 0 0.024
#> SRR1643300 1 0.1031 0.978 0.976 0 0.024
#> SRR1643301 1 0.0237 0.982 0.996 0 0.004
#> SRR1643302 1 0.0424 0.982 0.992 0 0.008
#> SRR1643303 1 0.0424 0.982 0.992 0 0.008
#> SRR1643304 1 0.0424 0.982 0.992 0 0.008
#> SRR1643305 1 0.0424 0.982 0.992 0 0.008
#> SRR1643306 1 0.0237 0.982 0.996 0 0.004
#> SRR1643307 1 0.0237 0.982 0.996 0 0.004
#> SRR1643308 1 0.0237 0.982 0.996 0 0.004
#> SRR1643309 1 0.0237 0.982 0.996 0 0.004
#> SRR1643310 1 0.0424 0.982 0.992 0 0.008
#> SRR1643311 1 0.0424 0.982 0.992 0 0.008
#> SRR1643312 1 0.0424 0.982 0.992 0 0.008
#> SRR1643313 1 0.0424 0.982 0.992 0 0.008
#> SRR1643314 1 0.0424 0.982 0.992 0 0.008
#> SRR1643315 1 0.0424 0.982 0.992 0 0.008
#> SRR1643316 1 0.0424 0.982 0.992 0 0.008
#> SRR1643317 1 0.0424 0.982 0.992 0 0.008
#> SRR1643318 1 0.0424 0.982 0.992 0 0.008
#> SRR1643319 1 0.0424 0.982 0.992 0 0.008
#> SRR1643320 1 0.0424 0.982 0.992 0 0.008
#> SRR1643321 1 0.0424 0.982 0.992 0 0.008
#> SRR1643322 1 0.0424 0.982 0.992 0 0.008
#> SRR1643323 1 0.0424 0.982 0.992 0 0.008
#> SRR1643324 1 0.0424 0.982 0.992 0 0.008
#> SRR1643325 1 0.0424 0.982 0.992 0 0.008
#> SRR1643326 1 0.0424 0.982 0.992 0 0.008
#> SRR1643327 1 0.0424 0.982 0.992 0 0.008
#> SRR1643328 1 0.1411 0.966 0.964 0 0.036
#> SRR1643329 1 0.1289 0.969 0.968 0 0.032
#> SRR1643330 1 0.1163 0.972 0.972 0 0.028
#> SRR1643331 1 0.1163 0.972 0.972 0 0.028
#> SRR1643332 1 0.1411 0.966 0.964 0 0.036
#> SRR1643333 1 0.1031 0.974 0.976 0 0.024
#> SRR1643334 1 0.1031 0.974 0.976 0 0.024
#> SRR1643335 1 0.0747 0.979 0.984 0 0.016
#> SRR1643336 1 0.0747 0.979 0.984 0 0.016
#> SRR1643337 1 0.1289 0.969 0.968 0 0.032
#> SRR1643338 1 0.1289 0.969 0.968 0 0.032
#> SRR1643339 1 0.1529 0.963 0.960 0 0.040
#> SRR1643340 1 0.1529 0.963 0.960 0 0.040
#> SRR1643341 1 0.1411 0.966 0.964 0 0.036
#> SRR1643342 1 0.1163 0.972 0.972 0 0.028
#> SRR1643343 1 0.0424 0.982 0.992 0 0.008
#> SRR1643344 1 0.0424 0.982 0.992 0 0.008
#> SRR1643345 1 0.0424 0.982 0.992 0 0.008
#> SRR1643346 1 0.0424 0.982 0.992 0 0.008
#> SRR1643347 1 0.0424 0.982 0.992 0 0.008
#> SRR1643348 1 0.0424 0.982 0.992 0 0.008
#> SRR1643349 1 0.0424 0.982 0.992 0 0.008
#> SRR1643350 1 0.0424 0.982 0.992 0 0.008
#> SRR1643351 1 0.0237 0.982 0.996 0 0.004
#> SRR1643352 1 0.0424 0.982 0.992 0 0.008
#> SRR1643353 1 0.0237 0.982 0.996 0 0.004
#> SRR1643354 1 0.0424 0.982 0.992 0 0.008
#> SRR1643355 1 0.0424 0.982 0.992 0 0.008
#> SRR1643356 1 0.0424 0.982 0.992 0 0.008
#> SRR1643357 1 0.0424 0.982 0.992 0 0.008
#> SRR1643358 1 0.1031 0.978 0.976 0 0.024
#> SRR1643359 1 0.1031 0.978 0.976 0 0.024
#> SRR1643360 1 0.1031 0.978 0.976 0 0.024
#> SRR1643361 1 0.1031 0.978 0.976 0 0.024
#> SRR1643362 1 0.1031 0.978 0.976 0 0.024
#> SRR1643363 1 0.1031 0.978 0.976 0 0.024
#> SRR1643364 1 0.1031 0.978 0.976 0 0.024
#> SRR1643365 1 0.1031 0.978 0.976 0 0.024
#> SRR1643366 1 0.1031 0.978 0.976 0 0.024
#> SRR1643367 1 0.1031 0.978 0.976 0 0.024
#> SRR1643368 1 0.1031 0.978 0.976 0 0.024
#> SRR1643369 1 0.1031 0.978 0.976 0 0.024
#> SRR1643370 1 0.1031 0.978 0.976 0 0.024
#> SRR1643371 1 0.1031 0.978 0.976 0 0.024
#> SRR1643372 1 0.1031 0.978 0.976 0 0.024
#> SRR1643373 1 0.1031 0.978 0.976 0 0.024
#> SRR1643374 1 0.1031 0.978 0.976 0 0.024
#> SRR1643375 1 0.1031 0.978 0.976 0 0.024
#> SRR1643376 1 0.1031 0.978 0.976 0 0.024
#> SRR1643377 1 0.1031 0.978 0.976 0 0.024
#> SRR1643378 1 0.1031 0.978 0.976 0 0.024
#> SRR1643379 1 0.1031 0.978 0.976 0 0.024
#> SRR1643380 1 0.1031 0.978 0.976 0 0.024
#> SRR1643381 1 0.1031 0.978 0.976 0 0.024
#> SRR1643382 1 0.1031 0.978 0.976 0 0.024
#> SRR1643383 1 0.1031 0.978 0.976 0 0.024
#> SRR1643384 1 0.1031 0.978 0.976 0 0.024
#> SRR1643385 1 0.1031 0.978 0.976 0 0.024
#> SRR1643386 1 0.1031 0.978 0.976 0 0.024
#> SRR1643387 1 0.1031 0.978 0.976 0 0.024
#> SRR1643388 1 0.1031 0.978 0.976 0 0.024
#> SRR1643389 1 0.1031 0.978 0.976 0 0.024
#> SRR1643390 1 0.0592 0.981 0.988 0 0.012
#> SRR1643391 1 0.0424 0.982 0.992 0 0.008
#> SRR1643392 1 0.1163 0.972 0.972 0 0.028
#> SRR1643393 1 0.0892 0.977 0.980 0 0.020
#> SRR1643394 1 0.0424 0.982 0.992 0 0.008
#> SRR1643395 1 0.1031 0.974 0.976 0 0.024
#> SRR1643396 1 0.0747 0.979 0.984 0 0.016
#> SRR1643397 1 0.0747 0.979 0.984 0 0.016
#> SRR1643398 1 0.0424 0.982 0.992 0 0.008
#> SRR1643399 1 0.1031 0.974 0.976 0 0.024
#> SRR1643400 1 0.0747 0.979 0.984 0 0.016
#> SRR1643401 1 0.1031 0.974 0.976 0 0.024
#> SRR1643402 1 0.0424 0.982 0.992 0 0.008
#> SRR1643403 1 0.0424 0.982 0.992 0 0.008
#> SRR1643404 1 0.0424 0.982 0.992 0 0.008
#> SRR1643405 1 0.1753 0.956 0.952 0 0.048
#> SRR1643406 1 0.1643 0.959 0.956 0 0.044
#> SRR1643407 1 0.1643 0.959 0.956 0 0.044
#> SRR1643408 1 0.1753 0.956 0.952 0 0.048
#> SRR1643409 1 0.1753 0.956 0.952 0 0.048
#> SRR1643410 1 0.1643 0.959 0.956 0 0.044
#> SRR1643411 1 0.1753 0.956 0.952 0 0.048
#> SRR1643412 1 0.1643 0.959 0.956 0 0.044
#> SRR1643413 1 0.1643 0.959 0.956 0 0.044
#> SRR1643414 1 0.1643 0.959 0.956 0 0.044
#> SRR1643415 1 0.1753 0.956 0.952 0 0.048
#> SRR1643416 1 0.1753 0.956 0.952 0 0.048
#> SRR1643417 1 0.1753 0.956 0.952 0 0.048
#> SRR1643418 1 0.1031 0.978 0.976 0 0.024
#> SRR1643419 1 0.1031 0.978 0.976 0 0.024
#> SRR1643420 1 0.1031 0.978 0.976 0 0.024
#> SRR1643421 1 0.1031 0.978 0.976 0 0.024
#> SRR1643422 1 0.1031 0.978 0.976 0 0.024
#> SRR1643423 1 0.1031 0.978 0.976 0 0.024
#> SRR1643424 1 0.1031 0.978 0.976 0 0.024
#> SRR1643425 1 0.1031 0.978 0.976 0 0.024
#> SRR1643426 1 0.1031 0.978 0.976 0 0.024
#> SRR1643427 1 0.1031 0.978 0.976 0 0.024
#> SRR1643428 1 0.1031 0.978 0.976 0 0.024
#> SRR1643429 1 0.1031 0.978 0.976 0 0.024
#> SRR1643430 1 0.1031 0.978 0.976 0 0.024
#> SRR1643431 1 0.1031 0.978 0.976 0 0.024
#> SRR1643432 1 0.1031 0.978 0.976 0 0.024
#> SRR1643433 1 0.1031 0.978 0.976 0 0.024
#> SRR1643434 1 0.1031 0.978 0.976 0 0.024
#> SRR1643435 1 0.1031 0.978 0.976 0 0.024
#> SRR1643436 1 0.1031 0.978 0.976 0 0.024
#> SRR1643437 1 0.1031 0.978 0.976 0 0.024
#> SRR1643438 1 0.1031 0.978 0.976 0 0.024
#> SRR1643439 1 0.1031 0.978 0.976 0 0.024
#> SRR1643440 1 0.1031 0.978 0.976 0 0.024
#> SRR1643441 1 0.1031 0.978 0.976 0 0.024
#> SRR1643442 1 0.1031 0.978 0.976 0 0.024
#> SRR1643443 2 0.0000 1.000 0.000 1 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0.000
#> SRR1643505 2 0.0000 1.000 0.000 1 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643168 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643169 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643170 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643171 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643172 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643173 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643174 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643175 4 0.4972 -0.8181 0.456 0.000 0.000 0.544
#> SRR1643176 4 0.4972 -0.8181 0.456 0.000 0.000 0.544
#> SRR1643177 4 0.4972 -0.8181 0.456 0.000 0.000 0.544
#> SRR1643178 4 0.4972 -0.8181 0.456 0.000 0.000 0.544
#> SRR1643180 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643181 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643182 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643183 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643184 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643185 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643186 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643187 4 0.4500 -0.2330 0.316 0.000 0.000 0.684
#> SRR1643188 4 0.4500 -0.2330 0.316 0.000 0.000 0.684
#> SRR1643189 4 0.4500 -0.2330 0.316 0.000 0.000 0.684
#> SRR1643190 4 0.4500 -0.2330 0.316 0.000 0.000 0.684
#> SRR1643191 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643192 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643193 4 0.4477 -0.2134 0.312 0.000 0.000 0.688
#> SRR1643194 4 0.4477 -0.2134 0.312 0.000 0.000 0.688
#> SRR1643195 4 0.4382 -0.1431 0.296 0.000 0.000 0.704
#> SRR1643196 4 0.4382 -0.1431 0.296 0.000 0.000 0.704
#> SRR1643197 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643198 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643199 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643200 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643201 4 0.4431 -0.1775 0.304 0.000 0.000 0.696
#> SRR1643202 4 0.4431 -0.1775 0.304 0.000 0.000 0.696
#> SRR1643203 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643204 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643205 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643206 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643207 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643208 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643209 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643210 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643211 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643212 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643213 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643214 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643215 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643216 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643217 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643218 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643219 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643220 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643221 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643222 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643223 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643224 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643225 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643226 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643227 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643228 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643229 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643230 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643231 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643232 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643233 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643234 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643235 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643236 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643237 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643238 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643239 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643240 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643241 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643242 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643243 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643245 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643246 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643247 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643248 3 0.0000 0.9935 0.000 0.000 1.000 0.000
#> SRR1643249 3 0.5280 0.6421 0.128 0.000 0.752 0.120
#> SRR1643250 4 0.0469 0.5704 0.012 0.000 0.000 0.988
#> SRR1643251 4 0.0707 0.5618 0.020 0.000 0.000 0.980
#> SRR1643252 4 0.0469 0.5704 0.012 0.000 0.000 0.988
#> SRR1643253 4 0.0469 0.5704 0.012 0.000 0.000 0.988
#> SRR1643254 4 0.0469 0.5704 0.012 0.000 0.000 0.988
#> SRR1643255 4 0.0592 0.5663 0.016 0.000 0.000 0.984
#> SRR1643256 4 0.1211 0.5385 0.040 0.000 0.000 0.960
#> SRR1643257 4 0.0592 0.5663 0.016 0.000 0.000 0.984
#> SRR1643258 4 0.0469 0.5704 0.012 0.000 0.000 0.988
#> SRR1643259 4 0.0817 0.5576 0.024 0.000 0.000 0.976
#> SRR1643260 4 0.0469 0.5704 0.012 0.000 0.000 0.988
#> SRR1643261 4 0.0592 0.5663 0.016 0.000 0.000 0.984
#> SRR1643262 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643263 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643264 4 0.0336 0.5737 0.008 0.000 0.000 0.992
#> SRR1643266 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643267 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643268 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643269 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643270 4 0.0188 0.5767 0.004 0.000 0.000 0.996
#> SRR1643271 4 0.0188 0.5767 0.004 0.000 0.000 0.996
#> SRR1643272 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643273 4 0.4222 -0.0284 0.272 0.000 0.000 0.728
#> SRR1643274 4 0.4250 -0.0466 0.276 0.000 0.000 0.724
#> SRR1643275 4 0.4222 -0.0284 0.272 0.000 0.000 0.728
#> SRR1643276 4 0.4222 -0.0284 0.272 0.000 0.000 0.728
#> SRR1643277 4 0.4277 -0.0664 0.280 0.000 0.000 0.720
#> SRR1643278 4 0.4222 -0.0284 0.272 0.000 0.000 0.728
#> SRR1643279 4 0.4193 -0.0116 0.268 0.000 0.000 0.732
#> SRR1643280 4 0.4193 -0.0116 0.268 0.000 0.000 0.732
#> SRR1643281 4 0.4222 -0.0284 0.272 0.000 0.000 0.728
#> SRR1643282 4 0.4222 -0.0284 0.272 0.000 0.000 0.728
#> SRR1643283 4 0.4277 -0.0664 0.280 0.000 0.000 0.720
#> SRR1643284 4 0.4250 -0.0467 0.276 0.000 0.000 0.724
#> SRR1643285 4 0.4222 -0.0284 0.272 0.000 0.000 0.728
#> SRR1643286 4 0.4250 -0.0466 0.276 0.000 0.000 0.724
#> SRR1643287 4 0.4500 0.5229 0.316 0.000 0.000 0.684
#> SRR1643288 4 0.4817 0.5042 0.388 0.000 0.000 0.612
#> SRR1643289 4 0.4830 0.5026 0.392 0.000 0.000 0.608
#> SRR1643290 4 0.4776 0.5057 0.376 0.000 0.000 0.624
#> SRR1643291 4 0.4817 0.5041 0.388 0.000 0.000 0.612
#> SRR1643292 4 0.4454 0.5246 0.308 0.000 0.000 0.692
#> SRR1643293 4 0.4250 0.5301 0.276 0.000 0.000 0.724
#> SRR1643294 4 0.3873 0.5371 0.228 0.000 0.000 0.772
#> SRR1643295 4 0.4790 0.5051 0.380 0.000 0.000 0.620
#> SRR1643296 4 0.4730 0.5117 0.364 0.000 0.000 0.636
#> SRR1643297 4 0.4746 0.5106 0.368 0.000 0.000 0.632
#> SRR1643298 4 0.4790 0.5035 0.380 0.000 0.000 0.620
#> SRR1643299 4 0.4543 0.5214 0.324 0.000 0.000 0.676
#> SRR1643300 4 0.4605 0.5186 0.336 0.000 0.000 0.664
#> SRR1643301 4 0.4454 -0.1949 0.308 0.000 0.000 0.692
#> SRR1643302 4 0.4454 -0.1947 0.308 0.000 0.000 0.692
#> SRR1643303 4 0.4356 -0.1229 0.292 0.000 0.000 0.708
#> SRR1643304 4 0.4431 -0.1775 0.304 0.000 0.000 0.696
#> SRR1643305 4 0.4454 -0.1953 0.308 0.000 0.000 0.692
#> SRR1643306 4 0.4331 -0.1040 0.288 0.000 0.000 0.712
#> SRR1643307 4 0.4382 -0.1388 0.296 0.000 0.000 0.704
#> SRR1643308 4 0.4382 -0.1422 0.296 0.000 0.000 0.704
#> SRR1643309 4 0.4331 -0.1040 0.288 0.000 0.000 0.712
#> SRR1643310 4 0.4406 -0.1602 0.300 0.000 0.000 0.700
#> SRR1643311 4 0.4406 -0.1602 0.300 0.000 0.000 0.700
#> SRR1643312 4 0.4454 -0.1953 0.308 0.000 0.000 0.692
#> SRR1643313 4 0.4406 -0.1579 0.300 0.000 0.000 0.700
#> SRR1643314 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643315 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643316 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643317 1 0.4992 0.9893 0.524 0.000 0.000 0.476
#> SRR1643318 1 0.4992 0.9893 0.524 0.000 0.000 0.476
#> SRR1643319 1 0.4999 0.9510 0.508 0.000 0.000 0.492
#> SRR1643320 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643321 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643322 1 0.4994 0.9806 0.520 0.000 0.000 0.480
#> SRR1643323 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643324 1 0.4994 0.9807 0.520 0.000 0.000 0.480
#> SRR1643325 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643326 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643327 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643328 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643329 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643330 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643331 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643332 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643333 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643334 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643335 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643336 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643337 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643338 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643339 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643340 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643341 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643342 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643343 4 0.4996 -0.8902 0.484 0.000 0.000 0.516
#> SRR1643344 1 0.4992 0.9894 0.524 0.000 0.000 0.476
#> SRR1643345 1 0.4992 0.9894 0.524 0.000 0.000 0.476
#> SRR1643346 4 0.4977 -0.8235 0.460 0.000 0.000 0.540
#> SRR1643347 1 0.4992 0.9894 0.524 0.000 0.000 0.476
#> SRR1643348 1 0.4998 0.9620 0.512 0.000 0.000 0.488
#> SRR1643349 4 0.4981 -0.8350 0.464 0.000 0.000 0.536
#> SRR1643350 4 0.5000 -0.9332 0.500 0.000 0.000 0.500
#> SRR1643351 4 0.4972 -0.8113 0.456 0.000 0.000 0.544
#> SRR1643352 1 0.5000 0.9424 0.504 0.000 0.000 0.496
#> SRR1643353 4 0.4994 -0.8809 0.480 0.000 0.000 0.520
#> SRR1643354 4 0.4985 -0.8456 0.468 0.000 0.000 0.532
#> SRR1643355 4 0.4999 -0.9137 0.492 0.000 0.000 0.508
#> SRR1643356 4 0.4998 -0.9029 0.488 0.000 0.000 0.512
#> SRR1643357 1 0.4992 0.9894 0.524 0.000 0.000 0.476
#> SRR1643358 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643359 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643360 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643361 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643362 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643363 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643364 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643365 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643366 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643367 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643368 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643369 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643370 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643371 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643372 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643373 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643374 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643375 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643376 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643377 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643378 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643379 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643380 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643381 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643382 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643383 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643384 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643385 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643386 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643387 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643388 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643389 4 0.0000 0.5796 0.000 0.000 0.000 1.000
#> SRR1643390 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643391 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643392 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643393 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643394 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643395 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643396 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643397 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643398 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643399 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643400 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643401 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643402 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643403 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643404 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643405 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643406 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643407 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643408 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643409 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643410 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643411 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643412 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643413 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643414 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643415 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643416 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643417 1 0.4989 0.9972 0.528 0.000 0.000 0.472
#> SRR1643418 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643419 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643420 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643421 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643422 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643423 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643424 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643425 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643426 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643427 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643428 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643429 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643430 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643431 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643432 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643433 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643434 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643435 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643436 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643437 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643438 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643439 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643440 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643441 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643442 4 0.4605 0.5082 0.336 0.000 0.000 0.664
#> SRR1643443 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643444 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643445 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643446 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643447 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643448 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643449 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643450 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643451 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643452 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643453 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643454 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643455 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643456 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643457 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643458 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643459 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643460 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643461 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643462 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643463 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643464 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643466 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643467 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643468 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643469 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643470 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643471 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643472 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643473 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643474 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643475 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643477 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643478 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643479 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643480 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643481 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643482 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643483 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643484 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643485 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643486 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643487 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643488 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643489 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643490 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643491 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643492 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643493 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643494 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643495 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643496 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643497 2 0.0469 0.9438 0.012 0.988 0.000 0.000
#> SRR1643498 2 0.0188 0.9434 0.004 0.996 0.000 0.000
#> SRR1643499 2 0.0817 0.9438 0.024 0.976 0.000 0.000
#> SRR1643500 2 0.0592 0.9441 0.016 0.984 0.000 0.000
#> SRR1643501 2 0.0707 0.9440 0.020 0.980 0.000 0.000
#> SRR1643502 2 0.0336 0.9435 0.008 0.992 0.000 0.000
#> SRR1643503 2 0.0000 0.9428 0.000 1.000 0.000 0.000
#> SRR1643504 2 0.0188 0.9433 0.004 0.996 0.000 0.000
#> SRR1643505 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643506 2 0.0336 0.9437 0.008 0.992 0.000 0.000
#> SRR1643507 2 0.0336 0.9435 0.008 0.992 0.000 0.000
#> SRR1643508 2 0.0592 0.9439 0.016 0.984 0.000 0.000
#> SRR1643509 2 0.0469 0.9439 0.012 0.988 0.000 0.000
#> SRR1643510 2 0.0817 0.9439 0.024 0.976 0.000 0.000
#> SRR1643511 2 0.1022 0.9437 0.032 0.968 0.000 0.000
#> SRR1643512 2 0.0188 0.9425 0.004 0.996 0.000 0.000
#> SRR1643513 2 0.1022 0.9439 0.032 0.968 0.000 0.000
#> SRR1643531 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643532 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643533 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643534 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643535 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643536 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643537 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643538 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643539 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643540 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643541 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643542 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643543 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643544 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643514 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643515 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643516 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643517 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643518 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643519 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643520 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643521 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643522 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643523 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643524 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643525 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643526 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643527 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643528 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643529 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643530 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643545 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643546 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643547 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643548 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643549 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643550 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643551 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643552 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643553 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643554 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643555 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643556 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643558 2 0.0592 0.9414 0.016 0.984 0.000 0.000
#> SRR1643559 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643560 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643561 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643562 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643563 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643564 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643565 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643566 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643567 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643568 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643569 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643570 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643571 2 0.2647 0.9391 0.120 0.880 0.000 0.000
#> SRR1643572 2 0.2647 0.9391 0.120 0.880 0.000 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643168 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643169 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643170 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643171 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643172 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643173 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643174 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643175 1 0.2020 0.775 0.900 0.000 0.000 0.100 0.000
#> SRR1643176 1 0.2020 0.775 0.900 0.000 0.000 0.100 0.000
#> SRR1643177 1 0.2020 0.775 0.900 0.000 0.000 0.100 0.000
#> SRR1643178 1 0.2020 0.775 0.900 0.000 0.000 0.100 0.000
#> SRR1643180 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643181 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643182 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643183 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643184 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643185 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643186 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643187 1 0.3210 0.639 0.788 0.000 0.000 0.212 0.000
#> SRR1643188 1 0.3210 0.639 0.788 0.000 0.000 0.212 0.000
#> SRR1643189 1 0.3210 0.639 0.788 0.000 0.000 0.212 0.000
#> SRR1643190 1 0.3210 0.639 0.788 0.000 0.000 0.212 0.000
#> SRR1643191 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643192 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643193 1 0.3210 0.639 0.788 0.000 0.000 0.212 0.000
#> SRR1643194 1 0.3210 0.639 0.788 0.000 0.000 0.212 0.000
#> SRR1643195 1 0.3424 0.589 0.760 0.000 0.000 0.240 0.000
#> SRR1643196 1 0.3424 0.589 0.760 0.000 0.000 0.240 0.000
#> SRR1643197 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643198 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643199 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643200 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643201 1 0.3305 0.620 0.776 0.000 0.000 0.224 0.000
#> SRR1643202 1 0.3305 0.620 0.776 0.000 0.000 0.224 0.000
#> SRR1643203 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643204 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643205 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643206 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643207 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643208 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643209 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643210 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643211 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643212 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643213 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643214 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643215 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643216 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643217 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643218 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643219 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643220 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643221 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643222 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643223 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643224 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643225 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643226 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643227 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643228 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643229 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643230 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643231 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643232 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643233 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643234 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643235 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643236 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643237 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643238 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643239 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643240 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643241 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643242 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643243 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643245 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643246 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643247 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643248 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643249 3 0.3586 0.595 0.264 0.000 0.736 0.000 0.000
#> SRR1643250 4 0.4294 0.545 0.468 0.000 0.000 0.532 0.000
#> SRR1643251 4 0.4297 0.534 0.472 0.000 0.000 0.528 0.000
#> SRR1643252 4 0.4294 0.545 0.468 0.000 0.000 0.532 0.000
#> SRR1643253 4 0.4297 0.535 0.472 0.000 0.000 0.528 0.000
#> SRR1643254 4 0.4291 0.554 0.464 0.000 0.000 0.536 0.000
#> SRR1643255 4 0.4294 0.545 0.468 0.000 0.000 0.532 0.000
#> SRR1643256 1 0.4307 -0.463 0.500 0.000 0.000 0.500 0.000
#> SRR1643257 4 0.4300 0.524 0.476 0.000 0.000 0.524 0.000
#> SRR1643258 4 0.4291 0.554 0.464 0.000 0.000 0.536 0.000
#> SRR1643259 4 0.4302 0.513 0.480 0.000 0.000 0.520 0.000
#> SRR1643260 4 0.4291 0.554 0.464 0.000 0.000 0.536 0.000
#> SRR1643261 4 0.4300 0.524 0.476 0.000 0.000 0.524 0.000
#> SRR1643262 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643263 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643264 4 0.4283 0.571 0.456 0.000 0.000 0.544 0.000
#> SRR1643266 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643267 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643268 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643269 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643270 4 0.4278 0.579 0.452 0.000 0.000 0.548 0.000
#> SRR1643271 4 0.4278 0.579 0.452 0.000 0.000 0.548 0.000
#> SRR1643272 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643273 1 0.3534 0.548 0.744 0.000 0.000 0.256 0.000
#> SRR1643274 1 0.3508 0.558 0.748 0.000 0.000 0.252 0.000
#> SRR1643275 1 0.3534 0.548 0.744 0.000 0.000 0.256 0.000
#> SRR1643276 1 0.3534 0.548 0.744 0.000 0.000 0.256 0.000
#> SRR1643277 1 0.3480 0.568 0.752 0.000 0.000 0.248 0.000
#> SRR1643278 1 0.3534 0.548 0.744 0.000 0.000 0.256 0.000
#> SRR1643279 1 0.3561 0.537 0.740 0.000 0.000 0.260 0.000
#> SRR1643280 1 0.3561 0.537 0.740 0.000 0.000 0.260 0.000
#> SRR1643281 1 0.3534 0.548 0.744 0.000 0.000 0.256 0.000
#> SRR1643282 1 0.3534 0.548 0.744 0.000 0.000 0.256 0.000
#> SRR1643283 1 0.3480 0.568 0.752 0.000 0.000 0.248 0.000
#> SRR1643284 1 0.3508 0.558 0.748 0.000 0.000 0.252 0.000
#> SRR1643285 1 0.3534 0.548 0.744 0.000 0.000 0.256 0.000
#> SRR1643286 1 0.3508 0.558 0.748 0.000 0.000 0.252 0.000
#> SRR1643287 4 0.3074 0.601 0.196 0.000 0.000 0.804 0.000
#> SRR1643288 4 0.2127 0.595 0.108 0.000 0.000 0.892 0.000
#> SRR1643289 4 0.1732 0.577 0.080 0.000 0.000 0.920 0.000
#> SRR1643290 4 0.1341 0.579 0.056 0.000 0.000 0.944 0.000
#> SRR1643291 4 0.1908 0.583 0.092 0.000 0.000 0.908 0.000
#> SRR1643292 4 0.3305 0.600 0.224 0.000 0.000 0.776 0.000
#> SRR1643293 4 0.3661 0.587 0.276 0.000 0.000 0.724 0.000
#> SRR1643294 4 0.3949 0.565 0.332 0.000 0.000 0.668 0.000
#> SRR1643295 4 0.1671 0.580 0.076 0.000 0.000 0.924 0.000
#> SRR1643296 4 0.2230 0.604 0.116 0.000 0.000 0.884 0.000
#> SRR1643297 4 0.2329 0.606 0.124 0.000 0.000 0.876 0.000
#> SRR1643298 4 0.1544 0.588 0.068 0.000 0.000 0.932 0.000
#> SRR1643299 4 0.2966 0.601 0.184 0.000 0.000 0.816 0.000
#> SRR1643300 4 0.2561 0.609 0.144 0.000 0.000 0.856 0.000
#> SRR1643301 1 0.3305 0.620 0.776 0.000 0.000 0.224 0.000
#> SRR1643302 1 0.3274 0.626 0.780 0.000 0.000 0.220 0.000
#> SRR1643303 1 0.3424 0.588 0.760 0.000 0.000 0.240 0.000
#> SRR1643304 1 0.3366 0.605 0.768 0.000 0.000 0.232 0.000
#> SRR1643305 1 0.3274 0.626 0.780 0.000 0.000 0.220 0.000
#> SRR1643306 1 0.3452 0.579 0.756 0.000 0.000 0.244 0.000
#> SRR1643307 1 0.3395 0.596 0.764 0.000 0.000 0.236 0.000
#> SRR1643308 1 0.3395 0.597 0.764 0.000 0.000 0.236 0.000
#> SRR1643309 1 0.3452 0.579 0.756 0.000 0.000 0.244 0.000
#> SRR1643310 1 0.3395 0.597 0.764 0.000 0.000 0.236 0.000
#> SRR1643311 1 0.3395 0.597 0.764 0.000 0.000 0.236 0.000
#> SRR1643312 1 0.3305 0.619 0.776 0.000 0.000 0.224 0.000
#> SRR1643313 1 0.3366 0.605 0.768 0.000 0.000 0.232 0.000
#> SRR1643314 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643315 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643316 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643317 1 0.0162 0.874 0.996 0.000 0.000 0.004 0.000
#> SRR1643318 1 0.0162 0.874 0.996 0.000 0.000 0.004 0.000
#> SRR1643319 1 0.0609 0.864 0.980 0.000 0.000 0.020 0.000
#> SRR1643320 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643321 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643322 1 0.0162 0.874 0.996 0.000 0.000 0.004 0.000
#> SRR1643323 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643324 1 0.0162 0.874 0.996 0.000 0.000 0.004 0.000
#> SRR1643325 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643326 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643327 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643328 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643329 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643330 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643331 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643332 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643333 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643334 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643335 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643336 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643337 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643338 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643339 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643340 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643341 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643342 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643343 1 0.1121 0.840 0.956 0.000 0.000 0.044 0.000
#> SRR1643344 1 0.0162 0.874 0.996 0.000 0.000 0.004 0.000
#> SRR1643345 1 0.0162 0.874 0.996 0.000 0.000 0.004 0.000
#> SRR1643346 1 0.1544 0.814 0.932 0.000 0.000 0.068 0.000
#> SRR1643347 1 0.0162 0.874 0.996 0.000 0.000 0.004 0.000
#> SRR1643348 1 0.0510 0.865 0.984 0.000 0.000 0.016 0.000
#> SRR1643349 1 0.1478 0.819 0.936 0.000 0.000 0.064 0.000
#> SRR1643350 1 0.0794 0.855 0.972 0.000 0.000 0.028 0.000
#> SRR1643351 1 0.1608 0.809 0.928 0.000 0.000 0.072 0.000
#> SRR1643352 1 0.0703 0.859 0.976 0.000 0.000 0.024 0.000
#> SRR1643353 1 0.1197 0.837 0.952 0.000 0.000 0.048 0.000
#> SRR1643354 1 0.1410 0.823 0.940 0.000 0.000 0.060 0.000
#> SRR1643355 1 0.0963 0.849 0.964 0.000 0.000 0.036 0.000
#> SRR1643356 1 0.1043 0.845 0.960 0.000 0.000 0.040 0.000
#> SRR1643357 1 0.0162 0.874 0.996 0.000 0.000 0.004 0.000
#> SRR1643358 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643359 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643360 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643361 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643362 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643363 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643364 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643365 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643366 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643367 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643368 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643369 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643370 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643371 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643372 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643373 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643374 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643375 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643376 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643377 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643378 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643379 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643380 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643381 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643382 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643383 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643384 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643385 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643386 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643387 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643388 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643389 4 0.4273 0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643390 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643391 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643392 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643393 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643394 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643395 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643396 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643397 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643398 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643399 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643400 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643401 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643402 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643403 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643404 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643405 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643406 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643407 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643408 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643409 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643410 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643411 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643412 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643413 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643414 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643415 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643416 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643417 1 0.0000 0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643418 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643419 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643420 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643421 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643422 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643423 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643424 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643425 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643426 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643427 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643428 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643429 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643430 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643431 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643432 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643433 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643434 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643435 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643436 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643437 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643438 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643439 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643440 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643441 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643442 4 0.0000 0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643443 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643444 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643445 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643446 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643447 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643448 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643449 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643450 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643451 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643452 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643453 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643454 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643455 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643456 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643457 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643458 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643459 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643460 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643461 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643462 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643463 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643464 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643466 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643467 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643468 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643469 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643470 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643471 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643472 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643473 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643474 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643475 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643477 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643478 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643479 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643480 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643481 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643482 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643483 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643484 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643485 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643486 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643487 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643488 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643489 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643490 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643491 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643492 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643493 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643494 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643495 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643496 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643497 2 0.2648 0.852 0.000 0.848 0.000 0.000 0.152
#> SRR1643498 2 0.2280 0.882 0.000 0.880 0.000 0.000 0.120
#> SRR1643499 2 0.3424 0.739 0.000 0.760 0.000 0.000 0.240
#> SRR1643500 2 0.2605 0.857 0.000 0.852 0.000 0.000 0.148
#> SRR1643501 2 0.3561 0.707 0.000 0.740 0.000 0.000 0.260
#> SRR1643502 2 0.2074 0.895 0.000 0.896 0.000 0.000 0.104
#> SRR1643503 2 0.1671 0.915 0.000 0.924 0.000 0.000 0.076
#> SRR1643504 2 0.1908 0.904 0.000 0.908 0.000 0.000 0.092
#> SRR1643505 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643506 2 0.2648 0.852 0.000 0.848 0.000 0.000 0.152
#> SRR1643507 2 0.2280 0.882 0.000 0.880 0.000 0.000 0.120
#> SRR1643508 2 0.2732 0.843 0.000 0.840 0.000 0.000 0.160
#> SRR1643509 2 0.2648 0.852 0.000 0.848 0.000 0.000 0.152
#> SRR1643510 2 0.3274 0.769 0.000 0.780 0.000 0.000 0.220
#> SRR1643511 2 0.3242 0.774 0.000 0.784 0.000 0.000 0.216
#> SRR1643512 2 0.1341 0.928 0.000 0.944 0.000 0.000 0.056
#> SRR1643513 2 0.2813 0.835 0.000 0.832 0.000 0.000 0.168
#> SRR1643531 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643532 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643533 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643534 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643535 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643536 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643537 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643538 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643539 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643540 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643541 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643542 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643543 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643544 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643514 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643515 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643516 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643517 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643518 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643519 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643520 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643521 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643522 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643523 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643524 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643525 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643526 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643527 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643528 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643529 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643530 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643545 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643546 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643547 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643548 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643549 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643550 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643551 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643552 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643553 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643554 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643555 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643556 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643558 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643559 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643560 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643561 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643562 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643563 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643564 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643565 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643566 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643567 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643568 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643569 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643570 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643571 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643572 5 0.0000 1.000 0.000 0.000 0.000 0.000 1.000
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 1 0.0146 0.7250 0.996 0.004 0.000 0.000 0.000 0.000
#> SRR1643168 1 0.0146 0.7250 0.996 0.004 0.000 0.000 0.000 0.000
#> SRR1643169 1 0.0146 0.7250 0.996 0.004 0.000 0.000 0.000 0.000
#> SRR1643170 1 0.0458 0.7269 0.984 0.016 0.000 0.000 0.000 0.000
#> SRR1643171 1 0.0000 0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643172 1 0.0000 0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643173 1 0.0000 0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643174 1 0.0000 0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643175 1 0.2933 0.4713 0.796 0.000 0.000 0.200 0.000 0.004
#> SRR1643176 1 0.2933 0.4713 0.796 0.000 0.000 0.200 0.000 0.004
#> SRR1643177 1 0.2933 0.4713 0.796 0.000 0.000 0.200 0.000 0.004
#> SRR1643178 1 0.3012 0.4685 0.796 0.000 0.000 0.196 0.000 0.008
#> SRR1643180 1 0.0000 0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643181 1 0.0000 0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643182 1 0.0000 0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643183 1 0.0000 0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643184 1 0.0000 0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643185 1 0.0000 0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643186 1 0.0000 0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643187 1 0.2631 0.5283 0.820 0.000 0.000 0.000 0.000 0.180
#> SRR1643188 1 0.2631 0.5283 0.820 0.000 0.000 0.000 0.000 0.180
#> SRR1643189 1 0.2631 0.5283 0.820 0.000 0.000 0.000 0.000 0.180
#> SRR1643190 1 0.2631 0.5283 0.820 0.000 0.000 0.000 0.000 0.180
#> SRR1643191 1 0.0146 0.7231 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643192 1 0.0260 0.7219 0.992 0.000 0.000 0.008 0.000 0.000
#> SRR1643193 1 0.2980 0.5177 0.808 0.000 0.000 0.012 0.000 0.180
#> SRR1643194 1 0.2980 0.5177 0.808 0.000 0.000 0.012 0.000 0.180
#> SRR1643195 1 0.4757 0.1769 0.676 0.000 0.000 0.144 0.000 0.180
#> SRR1643196 1 0.4757 0.1769 0.676 0.000 0.000 0.144 0.000 0.180
#> SRR1643197 1 0.0000 0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643198 1 0.0000 0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643199 1 0.0146 0.7230 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643200 1 0.0260 0.7219 0.992 0.000 0.000 0.008 0.000 0.000
#> SRR1643201 1 0.4328 0.3251 0.720 0.000 0.000 0.100 0.000 0.180
#> SRR1643202 1 0.4328 0.3251 0.720 0.000 0.000 0.100 0.000 0.180
#> SRR1643203 1 0.0000 0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643204 1 0.0000 0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643205 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643206 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643207 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643208 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643209 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643210 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643211 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643212 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643213 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643214 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643215 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643216 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643217 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643218 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643219 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643220 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643221 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643222 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643223 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643224 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643225 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643226 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643227 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643228 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643229 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643230 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643231 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643232 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643233 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643234 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643235 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643236 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643237 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643238 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643239 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643240 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643241 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643242 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643243 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643245 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643246 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643247 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643248 3 0.0000 0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643249 3 0.2854 0.6796 0.208 0.000 0.792 0.000 0.000 0.000
#> SRR1643250 4 0.5648 0.9805 0.304 0.000 0.000 0.516 0.000 0.180
#> SRR1643251 4 0.5660 0.9770 0.308 0.000 0.000 0.512 0.000 0.180
#> SRR1643252 4 0.5660 0.9770 0.308 0.000 0.000 0.512 0.000 0.180
#> SRR1643253 4 0.5648 0.9805 0.304 0.000 0.000 0.516 0.000 0.180
#> SRR1643254 4 0.5648 0.9805 0.304 0.000 0.000 0.516 0.000 0.180
#> SRR1643255 4 0.5671 0.9722 0.312 0.000 0.000 0.508 0.000 0.180
#> SRR1643256 4 0.5728 0.9341 0.336 0.000 0.000 0.484 0.000 0.180
#> SRR1643257 4 0.5660 0.9770 0.308 0.000 0.000 0.512 0.000 0.180
#> SRR1643258 4 0.5648 0.9805 0.304 0.000 0.000 0.516 0.000 0.180
#> SRR1643259 4 0.5682 0.9666 0.316 0.000 0.000 0.504 0.000 0.180
#> SRR1643260 4 0.5660 0.9770 0.308 0.000 0.000 0.512 0.000 0.180
#> SRR1643261 4 0.5671 0.9722 0.312 0.000 0.000 0.508 0.000 0.180
#> SRR1643262 4 0.5682 0.9864 0.300 0.000 0.000 0.512 0.000 0.188
#> SRR1643263 4 0.5704 0.9887 0.300 0.000 0.000 0.508 0.000 0.192
#> SRR1643264 4 0.5694 0.9759 0.312 0.000 0.000 0.504 0.000 0.184
#> SRR1643266 4 0.5682 0.9864 0.300 0.000 0.000 0.512 0.000 0.188
#> SRR1643267 4 0.5682 0.9864 0.300 0.000 0.000 0.512 0.000 0.188
#> SRR1643268 4 0.5704 0.9887 0.300 0.000 0.000 0.508 0.000 0.192
#> SRR1643269 4 0.5704 0.9887 0.300 0.000 0.000 0.508 0.000 0.192
#> SRR1643270 4 0.5672 0.9835 0.304 0.000 0.000 0.512 0.000 0.184
#> SRR1643271 4 0.5672 0.9835 0.304 0.000 0.000 0.512 0.000 0.184
#> SRR1643272 4 0.5704 0.9887 0.300 0.000 0.000 0.508 0.000 0.192
#> SRR1643273 1 0.3236 0.4995 0.796 0.000 0.000 0.024 0.000 0.180
#> SRR1643274 1 0.3236 0.4995 0.796 0.000 0.000 0.024 0.000 0.180
#> SRR1643275 1 0.3236 0.4995 0.796 0.000 0.000 0.024 0.000 0.180
#> SRR1643276 1 0.3236 0.4995 0.796 0.000 0.000 0.024 0.000 0.180
#> SRR1643277 1 0.3168 0.5143 0.804 0.000 0.000 0.024 0.000 0.172
#> SRR1643278 1 0.3455 0.4785 0.784 0.000 0.000 0.036 0.000 0.180
#> SRR1643279 1 0.3385 0.4860 0.788 0.000 0.000 0.032 0.000 0.180
#> SRR1643280 1 0.3312 0.4930 0.792 0.000 0.000 0.028 0.000 0.180
#> SRR1643281 1 0.3312 0.4929 0.792 0.000 0.000 0.028 0.000 0.180
#> SRR1643282 1 0.3236 0.4995 0.796 0.000 0.000 0.024 0.000 0.180
#> SRR1643283 1 0.3202 0.5071 0.800 0.000 0.000 0.024 0.000 0.176
#> SRR1643284 1 0.3385 0.4859 0.788 0.000 0.000 0.032 0.000 0.180
#> SRR1643285 1 0.3236 0.4995 0.796 0.000 0.000 0.024 0.000 0.180
#> SRR1643286 1 0.3236 0.4995 0.796 0.000 0.000 0.024 0.000 0.180
#> SRR1643287 6 0.2474 0.8374 0.080 0.000 0.000 0.040 0.000 0.880
#> SRR1643288 6 0.1644 0.9128 0.028 0.000 0.000 0.040 0.000 0.932
#> SRR1643289 6 0.1010 0.9320 0.004 0.000 0.000 0.036 0.000 0.960
#> SRR1643290 6 0.1245 0.9277 0.016 0.000 0.000 0.032 0.000 0.952
#> SRR1643291 6 0.1480 0.9209 0.020 0.000 0.000 0.040 0.000 0.940
#> SRR1643292 6 0.3439 0.7173 0.120 0.000 0.000 0.072 0.000 0.808
#> SRR1643293 6 0.3645 0.6556 0.152 0.000 0.000 0.064 0.000 0.784
#> SRR1643294 6 0.4203 0.4486 0.216 0.000 0.000 0.068 0.000 0.716
#> SRR1643295 6 0.1225 0.9278 0.012 0.000 0.000 0.036 0.000 0.952
#> SRR1643296 6 0.2136 0.8841 0.048 0.000 0.000 0.048 0.000 0.904
#> SRR1643297 6 0.2201 0.8820 0.048 0.000 0.000 0.052 0.000 0.900
#> SRR1643298 6 0.1398 0.9222 0.008 0.000 0.000 0.052 0.000 0.940
#> SRR1643299 6 0.2934 0.7951 0.112 0.000 0.000 0.044 0.000 0.844
#> SRR1643300 6 0.1930 0.8892 0.048 0.000 0.000 0.036 0.000 0.916
#> SRR1643301 1 0.3885 0.4185 0.756 0.000 0.000 0.064 0.000 0.180
#> SRR1643302 1 0.3771 0.4363 0.764 0.000 0.000 0.056 0.000 0.180
#> SRR1643303 1 0.4952 0.0706 0.652 0.000 0.000 0.168 0.000 0.180
#> SRR1643304 1 0.4650 0.2225 0.688 0.000 0.000 0.132 0.000 0.180
#> SRR1643305 1 0.3588 0.4617 0.776 0.000 0.000 0.044 0.000 0.180
#> SRR1643306 1 0.4328 0.3255 0.720 0.000 0.000 0.100 0.000 0.180
#> SRR1643307 1 0.4371 0.3138 0.716 0.000 0.000 0.104 0.000 0.180
#> SRR1643308 1 0.4536 0.2626 0.700 0.000 0.000 0.120 0.000 0.180
#> SRR1643309 1 0.4687 0.2059 0.684 0.000 0.000 0.136 0.000 0.180
#> SRR1643310 1 0.4613 0.2350 0.692 0.000 0.000 0.128 0.000 0.180
#> SRR1643311 1 0.4536 0.2641 0.700 0.000 0.000 0.120 0.000 0.180
#> SRR1643312 1 0.4371 0.3130 0.716 0.000 0.000 0.104 0.000 0.180
#> SRR1643313 1 0.4143 0.3699 0.736 0.000 0.000 0.084 0.000 0.180
#> SRR1643314 1 0.1802 0.7277 0.916 0.072 0.000 0.012 0.000 0.000
#> SRR1643315 1 0.2877 0.7145 0.820 0.168 0.000 0.012 0.000 0.000
#> SRR1643316 1 0.0622 0.7239 0.980 0.008 0.000 0.012 0.000 0.000
#> SRR1643317 1 0.2946 0.7165 0.824 0.160 0.000 0.012 0.000 0.004
#> SRR1643318 1 0.1370 0.7279 0.948 0.036 0.000 0.012 0.000 0.004
#> SRR1643319 1 0.3141 0.7199 0.828 0.140 0.000 0.012 0.000 0.020
#> SRR1643320 1 0.2531 0.7216 0.856 0.132 0.000 0.012 0.000 0.000
#> SRR1643321 1 0.2446 0.7230 0.864 0.124 0.000 0.012 0.000 0.000
#> SRR1643322 1 0.1888 0.7285 0.916 0.068 0.000 0.012 0.000 0.004
#> SRR1643323 1 0.1367 0.7285 0.944 0.044 0.000 0.012 0.000 0.000
#> SRR1643324 1 0.2673 0.7221 0.852 0.132 0.000 0.012 0.000 0.004
#> SRR1643325 1 0.0508 0.7224 0.984 0.004 0.000 0.012 0.000 0.000
#> SRR1643326 1 0.2312 0.7244 0.876 0.112 0.000 0.012 0.000 0.000
#> SRR1643327 1 0.1625 0.7284 0.928 0.060 0.000 0.012 0.000 0.000
#> SRR1643328 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643329 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643330 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643331 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643332 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643333 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643334 1 0.2823 0.7056 0.796 0.204 0.000 0.000 0.000 0.000
#> SRR1643335 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643336 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643337 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643338 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643339 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643340 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643341 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643342 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643343 1 0.0713 0.7109 0.972 0.000 0.000 0.028 0.000 0.000
#> SRR1643344 1 0.0363 0.7195 0.988 0.000 0.000 0.012 0.000 0.000
#> SRR1643345 1 0.0458 0.7177 0.984 0.000 0.000 0.016 0.000 0.000
#> SRR1643346 1 0.1007 0.6988 0.956 0.000 0.000 0.044 0.000 0.000
#> SRR1643347 1 0.0458 0.7177 0.984 0.000 0.000 0.016 0.000 0.000
#> SRR1643348 1 0.0632 0.7144 0.976 0.000 0.000 0.024 0.000 0.000
#> SRR1643349 1 0.0790 0.7082 0.968 0.000 0.000 0.032 0.000 0.000
#> SRR1643350 1 0.0363 0.7197 0.988 0.000 0.000 0.012 0.000 0.000
#> SRR1643351 1 0.0790 0.7097 0.968 0.000 0.000 0.032 0.000 0.000
#> SRR1643352 1 0.0547 0.7155 0.980 0.000 0.000 0.020 0.000 0.000
#> SRR1643353 1 0.0865 0.7057 0.964 0.000 0.000 0.036 0.000 0.000
#> SRR1643354 1 0.0713 0.7109 0.972 0.000 0.000 0.028 0.000 0.000
#> SRR1643355 1 0.0458 0.7177 0.984 0.000 0.000 0.016 0.000 0.000
#> SRR1643356 1 0.0865 0.7074 0.964 0.000 0.000 0.036 0.000 0.000
#> SRR1643357 1 0.0363 0.7194 0.988 0.000 0.000 0.012 0.000 0.000
#> SRR1643358 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643359 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643360 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643361 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643362 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643363 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643364 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643365 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643366 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643367 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643368 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643369 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643370 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643371 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643372 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643373 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643374 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643375 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643376 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643377 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643378 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643379 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643380 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643381 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643382 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643383 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643384 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643385 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643386 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643387 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643388 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643389 4 0.5726 0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643390 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643391 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643392 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643393 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643394 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643395 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643396 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643397 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643398 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643399 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643400 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643401 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643402 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643403 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643404 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643405 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643406 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643407 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643408 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643409 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643410 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643411 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643412 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643413 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643414 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643415 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643416 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643417 1 0.3371 0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643418 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643419 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643420 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643421 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643422 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643423 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643424 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643425 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643426 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643427 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643428 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643429 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643430 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643431 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643432 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643433 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643434 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643435 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643436 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643437 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643438 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643439 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643440 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643441 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643442 6 0.0000 0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643443 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643444 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643445 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643446 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643447 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643448 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643449 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643450 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643451 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643452 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643453 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643454 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643455 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643456 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643457 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643458 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643459 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643460 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643461 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643462 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643463 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643464 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643466 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643467 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643468 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643469 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643470 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643471 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643472 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643473 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643474 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643475 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643477 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643478 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643479 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643480 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643481 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643482 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643483 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643484 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643485 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643486 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643487 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643488 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643489 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643490 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643491 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643492 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643493 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643494 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643495 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643496 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643497 2 0.5176 0.7297 0.000 0.608 0.000 0.248 0.144 0.000
#> SRR1643498 2 0.5011 0.7553 0.000 0.620 0.000 0.264 0.116 0.000
#> SRR1643499 2 0.5667 0.6037 0.000 0.532 0.000 0.236 0.232 0.000
#> SRR1643500 2 0.5036 0.7356 0.000 0.632 0.000 0.228 0.140 0.000
#> SRR1643501 2 0.5680 0.5675 0.000 0.528 0.000 0.220 0.252 0.000
#> SRR1643502 2 0.4793 0.7669 0.000 0.648 0.000 0.252 0.100 0.000
#> SRR1643503 2 0.4597 0.7859 0.000 0.652 0.000 0.276 0.072 0.000
#> SRR1643504 2 0.4819 0.7761 0.000 0.628 0.000 0.284 0.088 0.000
#> SRR1643505 5 0.1204 0.9496 0.000 0.056 0.000 0.000 0.944 0.000
#> SRR1643506 2 0.5234 0.7300 0.000 0.596 0.000 0.260 0.144 0.000
#> SRR1643507 2 0.4931 0.7550 0.000 0.636 0.000 0.248 0.116 0.000
#> SRR1643508 2 0.5219 0.7199 0.000 0.604 0.000 0.244 0.152 0.000
#> SRR1643509 2 0.5335 0.7255 0.000 0.576 0.000 0.276 0.148 0.000
#> SRR1643510 2 0.5508 0.6368 0.000 0.564 0.000 0.224 0.212 0.000
#> SRR1643511 2 0.5546 0.6433 0.000 0.556 0.000 0.236 0.208 0.000
#> SRR1643512 2 0.4352 0.7987 0.000 0.668 0.000 0.280 0.052 0.000
#> SRR1643513 2 0.5150 0.7119 0.000 0.620 0.000 0.220 0.160 0.000
#> SRR1643531 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643532 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643533 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643534 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643535 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643536 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643537 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643538 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643539 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643540 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643541 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643542 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643543 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643544 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643514 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643515 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643516 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643517 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643518 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643519 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643520 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643521 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643522 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643523 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643524 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643525 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643526 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643527 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643528 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643529 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643530 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643545 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643546 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643547 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643548 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643549 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643550 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643551 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643552 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643553 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643554 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643555 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643556 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643558 2 0.3866 0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643559 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643560 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643561 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643562 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643563 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643564 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643565 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643566 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643567 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643568 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643569 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643570 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643571 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643572 5 0.0000 0.9992 0.000 0.000 0.000 0.000 1.000 0.000
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["CV", "mclust"]
# you can also extract it by
# res = res_list["CV:mclust"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'CV' method.
#> Subgroups are detected by 'mclust' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 6.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 0.998 0.999 0.4357 0.566 0.566
#> 3 3 0.884 0.931 0.967 0.3399 0.874 0.777
#> 4 4 0.837 0.865 0.933 0.2138 0.842 0.639
#> 5 5 0.901 0.949 0.942 0.0852 0.908 0.691
#> 6 6 0.958 0.921 0.951 0.0352 0.956 0.816
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 6
#> attr(,"optional")
#> [1] 2 5
There is also optional best \(k\) = 2 5 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0.0000 0.998 1.000 0.000
#> SRR1643168 1 0.0000 0.998 1.000 0.000
#> SRR1643169 1 0.0000 0.998 1.000 0.000
#> SRR1643170 1 0.0000 0.998 1.000 0.000
#> SRR1643171 1 0.0000 0.998 1.000 0.000
#> SRR1643172 1 0.0000 0.998 1.000 0.000
#> SRR1643173 1 0.0000 0.998 1.000 0.000
#> SRR1643174 1 0.0000 0.998 1.000 0.000
#> SRR1643175 1 0.0000 0.998 1.000 0.000
#> SRR1643176 1 0.0000 0.998 1.000 0.000
#> SRR1643177 1 0.0000 0.998 1.000 0.000
#> SRR1643178 1 0.0000 0.998 1.000 0.000
#> SRR1643180 1 0.0000 0.998 1.000 0.000
#> SRR1643181 1 0.0000 0.998 1.000 0.000
#> SRR1643182 1 0.0000 0.998 1.000 0.000
#> SRR1643183 1 0.0000 0.998 1.000 0.000
#> SRR1643184 1 0.0000 0.998 1.000 0.000
#> SRR1643185 1 0.0000 0.998 1.000 0.000
#> SRR1643186 1 0.0000 0.998 1.000 0.000
#> SRR1643187 1 0.0000 0.998 1.000 0.000
#> SRR1643188 1 0.0000 0.998 1.000 0.000
#> SRR1643189 1 0.0000 0.998 1.000 0.000
#> SRR1643190 1 0.0000 0.998 1.000 0.000
#> SRR1643191 1 0.0000 0.998 1.000 0.000
#> SRR1643192 1 0.0000 0.998 1.000 0.000
#> SRR1643193 1 0.0000 0.998 1.000 0.000
#> SRR1643194 1 0.0000 0.998 1.000 0.000
#> SRR1643195 1 0.0000 0.998 1.000 0.000
#> SRR1643196 1 0.0000 0.998 1.000 0.000
#> SRR1643197 1 0.0000 0.998 1.000 0.000
#> SRR1643198 1 0.0000 0.998 1.000 0.000
#> SRR1643199 1 0.0000 0.998 1.000 0.000
#> SRR1643200 1 0.0000 0.998 1.000 0.000
#> SRR1643201 1 0.0000 0.998 1.000 0.000
#> SRR1643202 1 0.0000 0.998 1.000 0.000
#> SRR1643203 1 0.0000 0.998 1.000 0.000
#> SRR1643204 1 0.0000 0.998 1.000 0.000
#> SRR1643205 1 0.0938 0.990 0.988 0.012
#> SRR1643206 1 0.0938 0.990 0.988 0.012
#> SRR1643207 1 0.0938 0.990 0.988 0.012
#> SRR1643208 1 0.0938 0.990 0.988 0.012
#> SRR1643209 1 0.0938 0.990 0.988 0.012
#> SRR1643210 1 0.0938 0.990 0.988 0.012
#> SRR1643211 1 0.0938 0.990 0.988 0.012
#> SRR1643212 1 0.0938 0.990 0.988 0.012
#> SRR1643213 1 0.0938 0.990 0.988 0.012
#> SRR1643214 1 0.0938 0.990 0.988 0.012
#> SRR1643215 1 0.0938 0.990 0.988 0.012
#> SRR1643216 1 0.0938 0.990 0.988 0.012
#> SRR1643217 1 0.0938 0.990 0.988 0.012
#> SRR1643218 1 0.0938 0.990 0.988 0.012
#> SRR1643219 1 0.0938 0.990 0.988 0.012
#> SRR1643220 1 0.0938 0.990 0.988 0.012
#> SRR1643221 1 0.0938 0.990 0.988 0.012
#> SRR1643222 1 0.0938 0.990 0.988 0.012
#> SRR1643223 1 0.0938 0.990 0.988 0.012
#> SRR1643224 1 0.0938 0.990 0.988 0.012
#> SRR1643225 1 0.0938 0.990 0.988 0.012
#> SRR1643226 1 0.0938 0.990 0.988 0.012
#> SRR1643227 1 0.0938 0.990 0.988 0.012
#> SRR1643228 1 0.0938 0.990 0.988 0.012
#> SRR1643229 1 0.0938 0.990 0.988 0.012
#> SRR1643230 1 0.0938 0.990 0.988 0.012
#> SRR1643231 1 0.0938 0.990 0.988 0.012
#> SRR1643232 1 0.0938 0.990 0.988 0.012
#> SRR1643233 1 0.0938 0.990 0.988 0.012
#> SRR1643234 1 0.0938 0.990 0.988 0.012
#> SRR1643235 1 0.0938 0.990 0.988 0.012
#> SRR1643236 1 0.0938 0.990 0.988 0.012
#> SRR1643237 1 0.0938 0.990 0.988 0.012
#> SRR1643238 1 0.0938 0.990 0.988 0.012
#> SRR1643239 1 0.0938 0.990 0.988 0.012
#> SRR1643240 1 0.0938 0.990 0.988 0.012
#> SRR1643241 1 0.0938 0.990 0.988 0.012
#> SRR1643242 1 0.0938 0.990 0.988 0.012
#> SRR1643243 1 0.0938 0.990 0.988 0.012
#> SRR1643245 1 0.0938 0.990 0.988 0.012
#> SRR1643246 1 0.0938 0.990 0.988 0.012
#> SRR1643247 1 0.0938 0.990 0.988 0.012
#> SRR1643248 1 0.0938 0.990 0.988 0.012
#> SRR1643249 1 0.0938 0.990 0.988 0.012
#> SRR1643250 1 0.0000 0.998 1.000 0.000
#> SRR1643251 1 0.0000 0.998 1.000 0.000
#> SRR1643252 1 0.0000 0.998 1.000 0.000
#> SRR1643253 1 0.0000 0.998 1.000 0.000
#> SRR1643254 1 0.0000 0.998 1.000 0.000
#> SRR1643255 1 0.0000 0.998 1.000 0.000
#> SRR1643256 1 0.0000 0.998 1.000 0.000
#> SRR1643257 1 0.0000 0.998 1.000 0.000
#> SRR1643258 1 0.0000 0.998 1.000 0.000
#> SRR1643259 1 0.0000 0.998 1.000 0.000
#> SRR1643260 1 0.0000 0.998 1.000 0.000
#> SRR1643261 1 0.0000 0.998 1.000 0.000
#> SRR1643262 1 0.0000 0.998 1.000 0.000
#> SRR1643263 1 0.0000 0.998 1.000 0.000
#> SRR1643264 1 0.0000 0.998 1.000 0.000
#> SRR1643266 1 0.0000 0.998 1.000 0.000
#> SRR1643267 1 0.0000 0.998 1.000 0.000
#> SRR1643268 1 0.0000 0.998 1.000 0.000
#> SRR1643269 1 0.0000 0.998 1.000 0.000
#> SRR1643270 1 0.0000 0.998 1.000 0.000
#> SRR1643271 1 0.0000 0.998 1.000 0.000
#> SRR1643272 1 0.0000 0.998 1.000 0.000
#> SRR1643273 1 0.0000 0.998 1.000 0.000
#> SRR1643274 1 0.0000 0.998 1.000 0.000
#> SRR1643275 1 0.0000 0.998 1.000 0.000
#> SRR1643276 1 0.0000 0.998 1.000 0.000
#> SRR1643277 1 0.0000 0.998 1.000 0.000
#> SRR1643278 1 0.0000 0.998 1.000 0.000
#> SRR1643279 1 0.0000 0.998 1.000 0.000
#> SRR1643280 1 0.0000 0.998 1.000 0.000
#> SRR1643281 1 0.0000 0.998 1.000 0.000
#> SRR1643282 1 0.0000 0.998 1.000 0.000
#> SRR1643283 1 0.0000 0.998 1.000 0.000
#> SRR1643284 1 0.0000 0.998 1.000 0.000
#> SRR1643285 1 0.0000 0.998 1.000 0.000
#> SRR1643286 1 0.0000 0.998 1.000 0.000
#> SRR1643287 1 0.0000 0.998 1.000 0.000
#> SRR1643288 1 0.0000 0.998 1.000 0.000
#> SRR1643289 1 0.0000 0.998 1.000 0.000
#> SRR1643290 1 0.0000 0.998 1.000 0.000
#> SRR1643291 1 0.0000 0.998 1.000 0.000
#> SRR1643292 1 0.0000 0.998 1.000 0.000
#> SRR1643293 1 0.0000 0.998 1.000 0.000
#> SRR1643294 1 0.0000 0.998 1.000 0.000
#> SRR1643295 1 0.0000 0.998 1.000 0.000
#> SRR1643296 1 0.0000 0.998 1.000 0.000
#> SRR1643297 1 0.0000 0.998 1.000 0.000
#> SRR1643298 1 0.0000 0.998 1.000 0.000
#> SRR1643299 1 0.0000 0.998 1.000 0.000
#> SRR1643300 1 0.0000 0.998 1.000 0.000
#> SRR1643301 1 0.0000 0.998 1.000 0.000
#> SRR1643302 1 0.0000 0.998 1.000 0.000
#> SRR1643303 1 0.0000 0.998 1.000 0.000
#> SRR1643304 1 0.0000 0.998 1.000 0.000
#> SRR1643305 1 0.0000 0.998 1.000 0.000
#> SRR1643306 1 0.0000 0.998 1.000 0.000
#> SRR1643307 1 0.0000 0.998 1.000 0.000
#> SRR1643308 1 0.0000 0.998 1.000 0.000
#> SRR1643309 1 0.0000 0.998 1.000 0.000
#> SRR1643310 1 0.0000 0.998 1.000 0.000
#> SRR1643311 1 0.0000 0.998 1.000 0.000
#> SRR1643312 1 0.0000 0.998 1.000 0.000
#> SRR1643313 1 0.0000 0.998 1.000 0.000
#> SRR1643314 1 0.0000 0.998 1.000 0.000
#> SRR1643315 1 0.0000 0.998 1.000 0.000
#> SRR1643316 1 0.0000 0.998 1.000 0.000
#> SRR1643317 1 0.0000 0.998 1.000 0.000
#> SRR1643318 1 0.0000 0.998 1.000 0.000
#> SRR1643319 1 0.0000 0.998 1.000 0.000
#> SRR1643320 1 0.0000 0.998 1.000 0.000
#> SRR1643321 1 0.0000 0.998 1.000 0.000
#> SRR1643322 1 0.0000 0.998 1.000 0.000
#> SRR1643323 1 0.0000 0.998 1.000 0.000
#> SRR1643324 1 0.0000 0.998 1.000 0.000
#> SRR1643325 1 0.0000 0.998 1.000 0.000
#> SRR1643326 1 0.0000 0.998 1.000 0.000
#> SRR1643327 1 0.0000 0.998 1.000 0.000
#> SRR1643328 1 0.0000 0.998 1.000 0.000
#> SRR1643329 1 0.0000 0.998 1.000 0.000
#> SRR1643330 1 0.0000 0.998 1.000 0.000
#> SRR1643331 1 0.0000 0.998 1.000 0.000
#> SRR1643332 1 0.0000 0.998 1.000 0.000
#> SRR1643333 1 0.0000 0.998 1.000 0.000
#> SRR1643334 1 0.0000 0.998 1.000 0.000
#> SRR1643335 1 0.0000 0.998 1.000 0.000
#> SRR1643336 1 0.0000 0.998 1.000 0.000
#> SRR1643337 1 0.0000 0.998 1.000 0.000
#> SRR1643338 1 0.0000 0.998 1.000 0.000
#> SRR1643339 1 0.0000 0.998 1.000 0.000
#> SRR1643340 1 0.0000 0.998 1.000 0.000
#> SRR1643341 1 0.0000 0.998 1.000 0.000
#> SRR1643342 1 0.0000 0.998 1.000 0.000
#> SRR1643343 1 0.0000 0.998 1.000 0.000
#> SRR1643344 1 0.0000 0.998 1.000 0.000
#> SRR1643345 1 0.0000 0.998 1.000 0.000
#> SRR1643346 1 0.0000 0.998 1.000 0.000
#> SRR1643347 1 0.0000 0.998 1.000 0.000
#> SRR1643348 1 0.0000 0.998 1.000 0.000
#> SRR1643349 1 0.0000 0.998 1.000 0.000
#> SRR1643350 1 0.0000 0.998 1.000 0.000
#> SRR1643351 1 0.0000 0.998 1.000 0.000
#> SRR1643352 1 0.0000 0.998 1.000 0.000
#> SRR1643353 1 0.0000 0.998 1.000 0.000
#> SRR1643354 1 0.0000 0.998 1.000 0.000
#> SRR1643355 1 0.0000 0.998 1.000 0.000
#> SRR1643356 1 0.0000 0.998 1.000 0.000
#> SRR1643357 1 0.0000 0.998 1.000 0.000
#> SRR1643358 1 0.0000 0.998 1.000 0.000
#> SRR1643359 1 0.0000 0.998 1.000 0.000
#> SRR1643360 1 0.0000 0.998 1.000 0.000
#> SRR1643361 1 0.0000 0.998 1.000 0.000
#> SRR1643362 1 0.0000 0.998 1.000 0.000
#> SRR1643363 1 0.0000 0.998 1.000 0.000
#> SRR1643364 1 0.0000 0.998 1.000 0.000
#> SRR1643365 1 0.0000 0.998 1.000 0.000
#> SRR1643366 1 0.0000 0.998 1.000 0.000
#> SRR1643367 1 0.0000 0.998 1.000 0.000
#> SRR1643368 1 0.0000 0.998 1.000 0.000
#> SRR1643369 1 0.0000 0.998 1.000 0.000
#> SRR1643370 1 0.0000 0.998 1.000 0.000
#> SRR1643371 1 0.0000 0.998 1.000 0.000
#> SRR1643372 1 0.0000 0.998 1.000 0.000
#> SRR1643373 1 0.0000 0.998 1.000 0.000
#> SRR1643374 1 0.0000 0.998 1.000 0.000
#> SRR1643375 1 0.0000 0.998 1.000 0.000
#> SRR1643376 1 0.0000 0.998 1.000 0.000
#> SRR1643377 1 0.0000 0.998 1.000 0.000
#> SRR1643378 1 0.0000 0.998 1.000 0.000
#> SRR1643379 1 0.0000 0.998 1.000 0.000
#> SRR1643380 1 0.0000 0.998 1.000 0.000
#> SRR1643381 1 0.0000 0.998 1.000 0.000
#> SRR1643382 1 0.0000 0.998 1.000 0.000
#> SRR1643383 1 0.0000 0.998 1.000 0.000
#> SRR1643384 1 0.0000 0.998 1.000 0.000
#> SRR1643385 1 0.0000 0.998 1.000 0.000
#> SRR1643386 1 0.0000 0.998 1.000 0.000
#> SRR1643387 1 0.0000 0.998 1.000 0.000
#> SRR1643388 1 0.0000 0.998 1.000 0.000
#> SRR1643389 1 0.0000 0.998 1.000 0.000
#> SRR1643390 1 0.0000 0.998 1.000 0.000
#> SRR1643391 1 0.0000 0.998 1.000 0.000
#> SRR1643392 1 0.0000 0.998 1.000 0.000
#> SRR1643393 1 0.0000 0.998 1.000 0.000
#> SRR1643394 1 0.0000 0.998 1.000 0.000
#> SRR1643395 1 0.0000 0.998 1.000 0.000
#> SRR1643396 1 0.0000 0.998 1.000 0.000
#> SRR1643397 1 0.0000 0.998 1.000 0.000
#> SRR1643398 1 0.0000 0.998 1.000 0.000
#> SRR1643399 1 0.0000 0.998 1.000 0.000
#> SRR1643400 1 0.0000 0.998 1.000 0.000
#> SRR1643401 1 0.0000 0.998 1.000 0.000
#> SRR1643402 1 0.0000 0.998 1.000 0.000
#> SRR1643403 1 0.0000 0.998 1.000 0.000
#> SRR1643404 1 0.0000 0.998 1.000 0.000
#> SRR1643405 1 0.0000 0.998 1.000 0.000
#> SRR1643406 1 0.0000 0.998 1.000 0.000
#> SRR1643407 1 0.0000 0.998 1.000 0.000
#> SRR1643408 1 0.0000 0.998 1.000 0.000
#> SRR1643409 1 0.0000 0.998 1.000 0.000
#> SRR1643410 1 0.0000 0.998 1.000 0.000
#> SRR1643411 1 0.0000 0.998 1.000 0.000
#> SRR1643412 1 0.0000 0.998 1.000 0.000
#> SRR1643413 1 0.0000 0.998 1.000 0.000
#> SRR1643414 1 0.0000 0.998 1.000 0.000
#> SRR1643415 1 0.0000 0.998 1.000 0.000
#> SRR1643416 1 0.0000 0.998 1.000 0.000
#> SRR1643417 1 0.0000 0.998 1.000 0.000
#> SRR1643418 1 0.0000 0.998 1.000 0.000
#> SRR1643419 1 0.0000 0.998 1.000 0.000
#> SRR1643420 1 0.0000 0.998 1.000 0.000
#> SRR1643421 1 0.0000 0.998 1.000 0.000
#> SRR1643422 1 0.0000 0.998 1.000 0.000
#> SRR1643423 1 0.0000 0.998 1.000 0.000
#> SRR1643424 1 0.0000 0.998 1.000 0.000
#> SRR1643425 1 0.0000 0.998 1.000 0.000
#> SRR1643426 1 0.0000 0.998 1.000 0.000
#> SRR1643427 1 0.0000 0.998 1.000 0.000
#> SRR1643428 1 0.0000 0.998 1.000 0.000
#> SRR1643429 1 0.0000 0.998 1.000 0.000
#> SRR1643430 1 0.0000 0.998 1.000 0.000
#> SRR1643431 1 0.0000 0.998 1.000 0.000
#> SRR1643432 1 0.0000 0.998 1.000 0.000
#> SRR1643433 1 0.0000 0.998 1.000 0.000
#> SRR1643434 1 0.0000 0.998 1.000 0.000
#> SRR1643435 1 0.0000 0.998 1.000 0.000
#> SRR1643436 1 0.0000 0.998 1.000 0.000
#> SRR1643437 1 0.0000 0.998 1.000 0.000
#> SRR1643438 1 0.0000 0.998 1.000 0.000
#> SRR1643439 1 0.0000 0.998 1.000 0.000
#> SRR1643440 1 0.0000 0.998 1.000 0.000
#> SRR1643441 1 0.0000 0.998 1.000 0.000
#> SRR1643442 1 0.0000 0.998 1.000 0.000
#> SRR1643443 2 0.0000 1.000 0.000 1.000
#> SRR1643444 2 0.0000 1.000 0.000 1.000
#> SRR1643445 2 0.0000 1.000 0.000 1.000
#> SRR1643446 2 0.0000 1.000 0.000 1.000
#> SRR1643447 2 0.0000 1.000 0.000 1.000
#> SRR1643448 2 0.0000 1.000 0.000 1.000
#> SRR1643449 2 0.0000 1.000 0.000 1.000
#> SRR1643450 2 0.0000 1.000 0.000 1.000
#> SRR1643451 2 0.0000 1.000 0.000 1.000
#> SRR1643452 2 0.0000 1.000 0.000 1.000
#> SRR1643453 2 0.0000 1.000 0.000 1.000
#> SRR1643454 2 0.0000 1.000 0.000 1.000
#> SRR1643455 2 0.0000 1.000 0.000 1.000
#> SRR1643456 2 0.0000 1.000 0.000 1.000
#> SRR1643457 2 0.0000 1.000 0.000 1.000
#> SRR1643458 2 0.0000 1.000 0.000 1.000
#> SRR1643459 2 0.0000 1.000 0.000 1.000
#> SRR1643460 2 0.0000 1.000 0.000 1.000
#> SRR1643461 2 0.0000 1.000 0.000 1.000
#> SRR1643462 2 0.0000 1.000 0.000 1.000
#> SRR1643463 2 0.0000 1.000 0.000 1.000
#> SRR1643464 2 0.0000 1.000 0.000 1.000
#> SRR1643466 2 0.0000 1.000 0.000 1.000
#> SRR1643467 2 0.0000 1.000 0.000 1.000
#> SRR1643468 2 0.0000 1.000 0.000 1.000
#> SRR1643469 2 0.0000 1.000 0.000 1.000
#> SRR1643470 2 0.0000 1.000 0.000 1.000
#> SRR1643471 2 0.0000 1.000 0.000 1.000
#> SRR1643472 2 0.0000 1.000 0.000 1.000
#> SRR1643473 2 0.0000 1.000 0.000 1.000
#> SRR1643474 2 0.0000 1.000 0.000 1.000
#> SRR1643475 2 0.0000 1.000 0.000 1.000
#> SRR1643477 2 0.0000 1.000 0.000 1.000
#> SRR1643478 2 0.0000 1.000 0.000 1.000
#> SRR1643479 2 0.0000 1.000 0.000 1.000
#> SRR1643480 2 0.0000 1.000 0.000 1.000
#> SRR1643481 2 0.0000 1.000 0.000 1.000
#> SRR1643482 2 0.0000 1.000 0.000 1.000
#> SRR1643483 2 0.0000 1.000 0.000 1.000
#> SRR1643484 2 0.0000 1.000 0.000 1.000
#> SRR1643485 2 0.0000 1.000 0.000 1.000
#> SRR1643486 2 0.0000 1.000 0.000 1.000
#> SRR1643487 2 0.0000 1.000 0.000 1.000
#> SRR1643488 2 0.0000 1.000 0.000 1.000
#> SRR1643489 2 0.0000 1.000 0.000 1.000
#> SRR1643490 2 0.0000 1.000 0.000 1.000
#> SRR1643491 2 0.0000 1.000 0.000 1.000
#> SRR1643492 2 0.0000 1.000 0.000 1.000
#> SRR1643493 2 0.0000 1.000 0.000 1.000
#> SRR1643494 2 0.0000 1.000 0.000 1.000
#> SRR1643495 2 0.0000 1.000 0.000 1.000
#> SRR1643496 2 0.0000 1.000 0.000 1.000
#> SRR1643497 2 0.0000 1.000 0.000 1.000
#> SRR1643498 2 0.0000 1.000 0.000 1.000
#> SRR1643499 2 0.0000 1.000 0.000 1.000
#> SRR1643500 2 0.0000 1.000 0.000 1.000
#> SRR1643501 2 0.0000 1.000 0.000 1.000
#> SRR1643502 2 0.0000 1.000 0.000 1.000
#> SRR1643503 2 0.0000 1.000 0.000 1.000
#> SRR1643504 2 0.0000 1.000 0.000 1.000
#> SRR1643505 2 0.0000 1.000 0.000 1.000
#> SRR1643506 2 0.0000 1.000 0.000 1.000
#> SRR1643507 2 0.0000 1.000 0.000 1.000
#> SRR1643508 2 0.0000 1.000 0.000 1.000
#> SRR1643509 2 0.0000 1.000 0.000 1.000
#> SRR1643510 2 0.0000 1.000 0.000 1.000
#> SRR1643511 2 0.0000 1.000 0.000 1.000
#> SRR1643512 2 0.0000 1.000 0.000 1.000
#> SRR1643513 2 0.0000 1.000 0.000 1.000
#> SRR1643531 2 0.0000 1.000 0.000 1.000
#> SRR1643532 2 0.0000 1.000 0.000 1.000
#> SRR1643533 2 0.0000 1.000 0.000 1.000
#> SRR1643534 2 0.0000 1.000 0.000 1.000
#> SRR1643535 2 0.0000 1.000 0.000 1.000
#> SRR1643536 2 0.0000 1.000 0.000 1.000
#> SRR1643537 2 0.0000 1.000 0.000 1.000
#> SRR1643538 2 0.0000 1.000 0.000 1.000
#> SRR1643539 2 0.0000 1.000 0.000 1.000
#> SRR1643540 2 0.0000 1.000 0.000 1.000
#> SRR1643541 2 0.0000 1.000 0.000 1.000
#> SRR1643542 2 0.0000 1.000 0.000 1.000
#> SRR1643543 2 0.0000 1.000 0.000 1.000
#> SRR1643544 2 0.0000 1.000 0.000 1.000
#> SRR1643514 2 0.0000 1.000 0.000 1.000
#> SRR1643515 2 0.0000 1.000 0.000 1.000
#> SRR1643516 2 0.0000 1.000 0.000 1.000
#> SRR1643517 2 0.0000 1.000 0.000 1.000
#> SRR1643518 2 0.0000 1.000 0.000 1.000
#> SRR1643519 2 0.0000 1.000 0.000 1.000
#> SRR1643520 2 0.0000 1.000 0.000 1.000
#> SRR1643521 2 0.0000 1.000 0.000 1.000
#> SRR1643522 2 0.0000 1.000 0.000 1.000
#> SRR1643523 2 0.0000 1.000 0.000 1.000
#> SRR1643524 2 0.0000 1.000 0.000 1.000
#> SRR1643525 2 0.0000 1.000 0.000 1.000
#> SRR1643526 2 0.0000 1.000 0.000 1.000
#> SRR1643527 2 0.0000 1.000 0.000 1.000
#> SRR1643528 2 0.0000 1.000 0.000 1.000
#> SRR1643529 2 0.0000 1.000 0.000 1.000
#> SRR1643530 2 0.0000 1.000 0.000 1.000
#> SRR1643545 2 0.0000 1.000 0.000 1.000
#> SRR1643546 2 0.0000 1.000 0.000 1.000
#> SRR1643547 2 0.0000 1.000 0.000 1.000
#> SRR1643548 2 0.0000 1.000 0.000 1.000
#> SRR1643549 2 0.0000 1.000 0.000 1.000
#> SRR1643550 2 0.0000 1.000 0.000 1.000
#> SRR1643551 2 0.0000 1.000 0.000 1.000
#> SRR1643552 2 0.0000 1.000 0.000 1.000
#> SRR1643553 2 0.0000 1.000 0.000 1.000
#> SRR1643554 2 0.0000 1.000 0.000 1.000
#> SRR1643555 2 0.0000 1.000 0.000 1.000
#> SRR1643556 2 0.0000 1.000 0.000 1.000
#> SRR1643558 2 0.0000 1.000 0.000 1.000
#> SRR1643559 2 0.0000 1.000 0.000 1.000
#> SRR1643560 2 0.0000 1.000 0.000 1.000
#> SRR1643561 2 0.0000 1.000 0.000 1.000
#> SRR1643562 2 0.0000 1.000 0.000 1.000
#> SRR1643563 2 0.0000 1.000 0.000 1.000
#> SRR1643564 2 0.0000 1.000 0.000 1.000
#> SRR1643565 2 0.0000 1.000 0.000 1.000
#> SRR1643566 2 0.0000 1.000 0.000 1.000
#> SRR1643567 2 0.0000 1.000 0.000 1.000
#> SRR1643568 2 0.0000 1.000 0.000 1.000
#> SRR1643569 2 0.0000 1.000 0.000 1.000
#> SRR1643570 2 0.0000 1.000 0.000 1.000
#> SRR1643571 2 0.0000 1.000 0.000 1.000
#> SRR1643572 2 0.0000 1.000 0.000 1.000
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.0592 0.938 0.988 0 0.012
#> SRR1643168 1 0.0592 0.938 0.988 0 0.012
#> SRR1643169 1 0.0592 0.938 0.988 0 0.012
#> SRR1643170 1 0.0592 0.938 0.988 0 0.012
#> SRR1643171 1 0.0592 0.938 0.988 0 0.012
#> SRR1643172 1 0.0592 0.938 0.988 0 0.012
#> SRR1643173 1 0.0592 0.938 0.988 0 0.012
#> SRR1643174 1 0.0592 0.938 0.988 0 0.012
#> SRR1643175 1 0.0237 0.943 0.996 0 0.004
#> SRR1643176 1 0.0237 0.943 0.996 0 0.004
#> SRR1643177 1 0.0237 0.943 0.996 0 0.004
#> SRR1643178 1 0.0237 0.943 0.996 0 0.004
#> SRR1643180 1 0.0592 0.938 0.988 0 0.012
#> SRR1643181 1 0.0592 0.938 0.988 0 0.012
#> SRR1643182 1 0.0592 0.938 0.988 0 0.012
#> SRR1643183 1 0.0592 0.938 0.988 0 0.012
#> SRR1643184 1 0.0592 0.938 0.988 0 0.012
#> SRR1643185 1 0.0592 0.938 0.988 0 0.012
#> SRR1643186 1 0.0592 0.938 0.988 0 0.012
#> SRR1643187 1 0.0000 0.942 1.000 0 0.000
#> SRR1643188 1 0.0000 0.942 1.000 0 0.000
#> SRR1643189 1 0.0000 0.942 1.000 0 0.000
#> SRR1643190 1 0.0000 0.942 1.000 0 0.000
#> SRR1643191 1 0.0000 0.942 1.000 0 0.000
#> SRR1643192 1 0.0000 0.942 1.000 0 0.000
#> SRR1643193 1 0.0000 0.942 1.000 0 0.000
#> SRR1643194 1 0.0000 0.942 1.000 0 0.000
#> SRR1643195 1 0.0237 0.943 0.996 0 0.004
#> SRR1643196 1 0.0237 0.943 0.996 0 0.004
#> SRR1643197 1 0.0237 0.942 0.996 0 0.004
#> SRR1643198 1 0.0237 0.942 0.996 0 0.004
#> SRR1643199 1 0.0000 0.942 1.000 0 0.000
#> SRR1643200 1 0.0000 0.942 1.000 0 0.000
#> SRR1643201 1 0.0000 0.942 1.000 0 0.000
#> SRR1643202 1 0.0000 0.942 1.000 0 0.000
#> SRR1643203 1 0.0000 0.942 1.000 0 0.000
#> SRR1643204 1 0.0000 0.942 1.000 0 0.000
#> SRR1643205 3 0.0592 0.999 0.012 0 0.988
#> SRR1643206 3 0.0592 0.999 0.012 0 0.988
#> SRR1643207 3 0.0592 0.999 0.012 0 0.988
#> SRR1643208 3 0.0592 0.999 0.012 0 0.988
#> SRR1643209 3 0.0592 0.999 0.012 0 0.988
#> SRR1643210 3 0.0592 0.999 0.012 0 0.988
#> SRR1643211 3 0.0592 0.999 0.012 0 0.988
#> SRR1643212 3 0.0592 0.999 0.012 0 0.988
#> SRR1643213 3 0.0592 0.999 0.012 0 0.988
#> SRR1643214 3 0.0592 0.999 0.012 0 0.988
#> SRR1643215 3 0.0592 0.999 0.012 0 0.988
#> SRR1643216 3 0.0592 0.999 0.012 0 0.988
#> SRR1643217 3 0.0592 0.999 0.012 0 0.988
#> SRR1643218 3 0.0592 0.999 0.012 0 0.988
#> SRR1643219 3 0.0592 0.999 0.012 0 0.988
#> SRR1643220 3 0.0592 0.999 0.012 0 0.988
#> SRR1643221 3 0.0592 0.999 0.012 0 0.988
#> SRR1643222 3 0.0592 0.999 0.012 0 0.988
#> SRR1643223 3 0.0592 0.999 0.012 0 0.988
#> SRR1643224 3 0.0592 0.999 0.012 0 0.988
#> SRR1643225 3 0.0592 0.999 0.012 0 0.988
#> SRR1643226 3 0.0592 0.999 0.012 0 0.988
#> SRR1643227 3 0.0592 0.999 0.012 0 0.988
#> SRR1643228 3 0.0592 0.999 0.012 0 0.988
#> SRR1643229 3 0.0592 0.999 0.012 0 0.988
#> SRR1643230 3 0.0592 0.999 0.012 0 0.988
#> SRR1643231 3 0.0592 0.999 0.012 0 0.988
#> SRR1643232 3 0.0592 0.999 0.012 0 0.988
#> SRR1643233 3 0.0592 0.999 0.012 0 0.988
#> SRR1643234 3 0.0592 0.999 0.012 0 0.988
#> SRR1643235 3 0.0592 0.999 0.012 0 0.988
#> SRR1643236 3 0.0592 0.999 0.012 0 0.988
#> SRR1643237 3 0.0592 0.999 0.012 0 0.988
#> SRR1643238 3 0.0592 0.999 0.012 0 0.988
#> SRR1643239 3 0.0592 0.999 0.012 0 0.988
#> SRR1643240 3 0.0592 0.999 0.012 0 0.988
#> SRR1643241 3 0.0592 0.999 0.012 0 0.988
#> SRR1643242 3 0.0747 0.995 0.016 0 0.984
#> SRR1643243 3 0.0747 0.995 0.016 0 0.984
#> SRR1643245 3 0.0747 0.995 0.016 0 0.984
#> SRR1643246 3 0.0747 0.995 0.016 0 0.984
#> SRR1643247 3 0.0747 0.995 0.016 0 0.984
#> SRR1643248 3 0.0592 0.999 0.012 0 0.988
#> SRR1643249 3 0.1163 0.985 0.028 0 0.972
#> SRR1643250 1 0.0237 0.943 0.996 0 0.004
#> SRR1643251 1 0.0237 0.943 0.996 0 0.004
#> SRR1643252 1 0.0237 0.943 0.996 0 0.004
#> SRR1643253 1 0.0237 0.943 0.996 0 0.004
#> SRR1643254 1 0.0237 0.943 0.996 0 0.004
#> SRR1643255 1 0.0237 0.943 0.996 0 0.004
#> SRR1643256 1 0.0237 0.943 0.996 0 0.004
#> SRR1643257 1 0.0237 0.943 0.996 0 0.004
#> SRR1643258 1 0.0237 0.943 0.996 0 0.004
#> SRR1643259 1 0.0237 0.943 0.996 0 0.004
#> SRR1643260 1 0.0237 0.943 0.996 0 0.004
#> SRR1643261 1 0.0237 0.943 0.996 0 0.004
#> SRR1643262 1 0.0237 0.943 0.996 0 0.004
#> SRR1643263 1 0.0237 0.943 0.996 0 0.004
#> SRR1643264 1 0.0237 0.943 0.996 0 0.004
#> SRR1643266 1 0.0237 0.943 0.996 0 0.004
#> SRR1643267 1 0.0237 0.943 0.996 0 0.004
#> SRR1643268 1 0.0237 0.943 0.996 0 0.004
#> SRR1643269 1 0.0237 0.943 0.996 0 0.004
#> SRR1643270 1 0.0237 0.943 0.996 0 0.004
#> SRR1643271 1 0.0237 0.943 0.996 0 0.004
#> SRR1643272 1 0.0237 0.943 0.996 0 0.004
#> SRR1643273 1 0.0237 0.943 0.996 0 0.004
#> SRR1643274 1 0.0237 0.943 0.996 0 0.004
#> SRR1643275 1 0.0237 0.943 0.996 0 0.004
#> SRR1643276 1 0.0237 0.943 0.996 0 0.004
#> SRR1643277 1 0.0237 0.943 0.996 0 0.004
#> SRR1643278 1 0.0237 0.943 0.996 0 0.004
#> SRR1643279 1 0.0237 0.943 0.996 0 0.004
#> SRR1643280 1 0.0237 0.943 0.996 0 0.004
#> SRR1643281 1 0.0237 0.943 0.996 0 0.004
#> SRR1643282 1 0.0237 0.943 0.996 0 0.004
#> SRR1643283 1 0.0237 0.943 0.996 0 0.004
#> SRR1643284 1 0.0237 0.943 0.996 0 0.004
#> SRR1643285 1 0.0237 0.943 0.996 0 0.004
#> SRR1643286 1 0.0237 0.943 0.996 0 0.004
#> SRR1643287 1 0.3116 0.859 0.892 0 0.108
#> SRR1643288 1 0.3116 0.859 0.892 0 0.108
#> SRR1643289 1 0.3116 0.859 0.892 0 0.108
#> SRR1643290 1 0.3038 0.863 0.896 0 0.104
#> SRR1643291 1 0.3192 0.855 0.888 0 0.112
#> SRR1643292 1 0.2959 0.867 0.900 0 0.100
#> SRR1643293 1 0.3116 0.859 0.892 0 0.108
#> SRR1643294 1 0.3038 0.863 0.896 0 0.104
#> SRR1643295 1 0.3038 0.863 0.896 0 0.104
#> SRR1643296 1 0.2959 0.867 0.900 0 0.100
#> SRR1643297 1 0.3116 0.859 0.892 0 0.108
#> SRR1643298 1 0.3116 0.859 0.892 0 0.108
#> SRR1643299 1 0.3116 0.859 0.892 0 0.108
#> SRR1643300 1 0.3038 0.863 0.896 0 0.104
#> SRR1643301 1 0.0237 0.943 0.996 0 0.004
#> SRR1643302 1 0.0237 0.943 0.996 0 0.004
#> SRR1643303 1 0.0237 0.943 0.996 0 0.004
#> SRR1643304 1 0.0237 0.943 0.996 0 0.004
#> SRR1643305 1 0.0237 0.943 0.996 0 0.004
#> SRR1643306 1 0.0237 0.943 0.996 0 0.004
#> SRR1643307 1 0.0237 0.943 0.996 0 0.004
#> SRR1643308 1 0.0237 0.943 0.996 0 0.004
#> SRR1643309 1 0.0237 0.943 0.996 0 0.004
#> SRR1643310 1 0.0237 0.943 0.996 0 0.004
#> SRR1643311 1 0.0237 0.943 0.996 0 0.004
#> SRR1643312 1 0.0237 0.943 0.996 0 0.004
#> SRR1643313 1 0.0237 0.943 0.996 0 0.004
#> SRR1643314 1 0.0424 0.942 0.992 0 0.008
#> SRR1643315 1 0.0424 0.942 0.992 0 0.008
#> SRR1643316 1 0.0424 0.942 0.992 0 0.008
#> SRR1643317 1 0.0424 0.942 0.992 0 0.008
#> SRR1643318 1 0.0237 0.943 0.996 0 0.004
#> SRR1643319 1 0.0237 0.943 0.996 0 0.004
#> SRR1643320 1 0.0424 0.942 0.992 0 0.008
#> SRR1643321 1 0.0424 0.942 0.992 0 0.008
#> SRR1643322 1 0.0424 0.942 0.992 0 0.008
#> SRR1643323 1 0.0237 0.943 0.996 0 0.004
#> SRR1643324 1 0.0237 0.943 0.996 0 0.004
#> SRR1643325 1 0.0424 0.942 0.992 0 0.008
#> SRR1643326 1 0.0237 0.943 0.996 0 0.004
#> SRR1643327 1 0.0424 0.942 0.992 0 0.008
#> SRR1643328 1 0.0747 0.937 0.984 0 0.016
#> SRR1643329 1 0.0747 0.937 0.984 0 0.016
#> SRR1643330 1 0.0747 0.937 0.984 0 0.016
#> SRR1643331 1 0.0747 0.937 0.984 0 0.016
#> SRR1643332 1 0.0747 0.937 0.984 0 0.016
#> SRR1643333 1 0.0747 0.937 0.984 0 0.016
#> SRR1643334 1 0.0592 0.938 0.988 0 0.012
#> SRR1643335 1 0.0592 0.938 0.988 0 0.012
#> SRR1643336 1 0.0747 0.937 0.984 0 0.016
#> SRR1643337 1 0.0747 0.937 0.984 0 0.016
#> SRR1643338 1 0.0747 0.937 0.984 0 0.016
#> SRR1643339 1 0.0747 0.937 0.984 0 0.016
#> SRR1643340 1 0.0747 0.937 0.984 0 0.016
#> SRR1643341 1 0.0747 0.937 0.984 0 0.016
#> SRR1643342 1 0.0747 0.937 0.984 0 0.016
#> SRR1643343 1 0.0000 0.942 1.000 0 0.000
#> SRR1643344 1 0.0000 0.942 1.000 0 0.000
#> SRR1643345 1 0.0000 0.942 1.000 0 0.000
#> SRR1643346 1 0.0000 0.942 1.000 0 0.000
#> SRR1643347 1 0.0000 0.942 1.000 0 0.000
#> SRR1643348 1 0.0000 0.942 1.000 0 0.000
#> SRR1643349 1 0.0000 0.942 1.000 0 0.000
#> SRR1643350 1 0.0000 0.942 1.000 0 0.000
#> SRR1643351 1 0.0000 0.942 1.000 0 0.000
#> SRR1643352 1 0.0000 0.942 1.000 0 0.000
#> SRR1643353 1 0.0000 0.942 1.000 0 0.000
#> SRR1643354 1 0.0000 0.942 1.000 0 0.000
#> SRR1643355 1 0.0000 0.942 1.000 0 0.000
#> SRR1643356 1 0.0000 0.942 1.000 0 0.000
#> SRR1643357 1 0.0000 0.942 1.000 0 0.000
#> SRR1643358 1 0.0237 0.943 0.996 0 0.004
#> SRR1643359 1 0.0237 0.943 0.996 0 0.004
#> SRR1643360 1 0.0237 0.943 0.996 0 0.004
#> SRR1643361 1 0.0237 0.943 0.996 0 0.004
#> SRR1643362 1 0.0237 0.943 0.996 0 0.004
#> SRR1643363 1 0.0237 0.943 0.996 0 0.004
#> SRR1643364 1 0.0237 0.943 0.996 0 0.004
#> SRR1643365 1 0.0237 0.943 0.996 0 0.004
#> SRR1643366 1 0.0237 0.943 0.996 0 0.004
#> SRR1643367 1 0.0237 0.943 0.996 0 0.004
#> SRR1643368 1 0.0237 0.943 0.996 0 0.004
#> SRR1643369 1 0.0237 0.943 0.996 0 0.004
#> SRR1643370 1 0.0237 0.943 0.996 0 0.004
#> SRR1643371 1 0.0237 0.943 0.996 0 0.004
#> SRR1643372 1 0.0237 0.943 0.996 0 0.004
#> SRR1643373 1 0.0237 0.943 0.996 0 0.004
#> SRR1643374 1 0.0237 0.943 0.996 0 0.004
#> SRR1643375 1 0.0237 0.943 0.996 0 0.004
#> SRR1643376 1 0.0237 0.943 0.996 0 0.004
#> SRR1643377 1 0.0237 0.943 0.996 0 0.004
#> SRR1643378 1 0.0237 0.943 0.996 0 0.004
#> SRR1643379 1 0.0237 0.943 0.996 0 0.004
#> SRR1643380 1 0.0237 0.943 0.996 0 0.004
#> SRR1643381 1 0.0237 0.943 0.996 0 0.004
#> SRR1643382 1 0.0237 0.943 0.996 0 0.004
#> SRR1643383 1 0.0237 0.943 0.996 0 0.004
#> SRR1643384 1 0.0237 0.943 0.996 0 0.004
#> SRR1643385 1 0.0237 0.943 0.996 0 0.004
#> SRR1643386 1 0.0237 0.943 0.996 0 0.004
#> SRR1643387 1 0.0237 0.943 0.996 0 0.004
#> SRR1643388 1 0.0237 0.943 0.996 0 0.004
#> SRR1643389 1 0.0237 0.943 0.996 0 0.004
#> SRR1643390 1 0.0592 0.938 0.988 0 0.012
#> SRR1643391 1 0.0592 0.938 0.988 0 0.012
#> SRR1643392 1 0.0592 0.938 0.988 0 0.012
#> SRR1643393 1 0.0592 0.938 0.988 0 0.012
#> SRR1643394 1 0.0592 0.938 0.988 0 0.012
#> SRR1643395 1 0.0592 0.938 0.988 0 0.012
#> SRR1643396 1 0.0592 0.938 0.988 0 0.012
#> SRR1643397 1 0.0592 0.938 0.988 0 0.012
#> SRR1643398 1 0.0592 0.938 0.988 0 0.012
#> SRR1643399 1 0.0592 0.938 0.988 0 0.012
#> SRR1643400 1 0.0592 0.938 0.988 0 0.012
#> SRR1643401 1 0.0592 0.938 0.988 0 0.012
#> SRR1643402 1 0.0592 0.938 0.988 0 0.012
#> SRR1643403 1 0.0592 0.938 0.988 0 0.012
#> SRR1643404 1 0.0592 0.938 0.988 0 0.012
#> SRR1643405 1 0.0592 0.938 0.988 0 0.012
#> SRR1643406 1 0.0592 0.938 0.988 0 0.012
#> SRR1643407 1 0.0592 0.938 0.988 0 0.012
#> SRR1643408 1 0.0592 0.938 0.988 0 0.012
#> SRR1643409 1 0.0592 0.938 0.988 0 0.012
#> SRR1643410 1 0.0592 0.938 0.988 0 0.012
#> SRR1643411 1 0.0592 0.938 0.988 0 0.012
#> SRR1643412 1 0.0592 0.938 0.988 0 0.012
#> SRR1643413 1 0.0592 0.938 0.988 0 0.012
#> SRR1643414 1 0.0592 0.938 0.988 0 0.012
#> SRR1643415 1 0.0592 0.938 0.988 0 0.012
#> SRR1643416 1 0.0592 0.938 0.988 0 0.012
#> SRR1643417 1 0.0592 0.938 0.988 0 0.012
#> SRR1643418 1 0.6111 0.428 0.604 0 0.396
#> SRR1643419 1 0.6111 0.428 0.604 0 0.396
#> SRR1643420 1 0.6111 0.428 0.604 0 0.396
#> SRR1643421 1 0.6111 0.428 0.604 0 0.396
#> SRR1643422 1 0.6111 0.428 0.604 0 0.396
#> SRR1643423 1 0.6111 0.428 0.604 0 0.396
#> SRR1643424 1 0.6111 0.428 0.604 0 0.396
#> SRR1643425 1 0.6111 0.428 0.604 0 0.396
#> SRR1643426 1 0.6111 0.428 0.604 0 0.396
#> SRR1643427 1 0.6111 0.428 0.604 0 0.396
#> SRR1643428 1 0.6111 0.428 0.604 0 0.396
#> SRR1643429 1 0.6111 0.428 0.604 0 0.396
#> SRR1643430 1 0.6111 0.428 0.604 0 0.396
#> SRR1643431 1 0.6111 0.428 0.604 0 0.396
#> SRR1643432 1 0.6111 0.428 0.604 0 0.396
#> SRR1643433 1 0.6111 0.428 0.604 0 0.396
#> SRR1643434 1 0.6111 0.428 0.604 0 0.396
#> SRR1643435 1 0.6111 0.428 0.604 0 0.396
#> SRR1643436 1 0.6111 0.428 0.604 0 0.396
#> SRR1643437 1 0.6111 0.428 0.604 0 0.396
#> SRR1643438 1 0.6111 0.428 0.604 0 0.396
#> SRR1643439 1 0.6111 0.428 0.604 0 0.396
#> SRR1643440 1 0.6111 0.428 0.604 0 0.396
#> SRR1643441 1 0.6111 0.428 0.604 0 0.396
#> SRR1643442 1 0.6111 0.428 0.604 0 0.396
#> SRR1643443 2 0.0000 1.000 0.000 1 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0.000
#> SRR1643505 2 0.0000 1.000 0.000 1 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643168 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643169 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643170 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643171 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643172 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643173 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643174 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643175 1 0.4972 0.313 0.544 0.000 0.000 0.456
#> SRR1643176 1 0.4972 0.313 0.544 0.000 0.000 0.456
#> SRR1643177 1 0.4972 0.313 0.544 0.000 0.000 0.456
#> SRR1643178 1 0.4972 0.313 0.544 0.000 0.000 0.456
#> SRR1643180 1 0.0592 0.838 0.984 0.000 0.000 0.016
#> SRR1643181 1 0.0592 0.838 0.984 0.000 0.000 0.016
#> SRR1643182 1 0.0592 0.838 0.984 0.000 0.000 0.016
#> SRR1643183 1 0.0592 0.838 0.984 0.000 0.000 0.016
#> SRR1643184 1 0.0592 0.838 0.984 0.000 0.000 0.016
#> SRR1643185 1 0.0592 0.838 0.984 0.000 0.000 0.016
#> SRR1643186 1 0.0592 0.838 0.984 0.000 0.000 0.016
#> SRR1643187 1 0.4331 0.654 0.712 0.000 0.000 0.288
#> SRR1643188 1 0.4331 0.654 0.712 0.000 0.000 0.288
#> SRR1643189 1 0.4331 0.654 0.712 0.000 0.000 0.288
#> SRR1643190 1 0.4331 0.654 0.712 0.000 0.000 0.288
#> SRR1643191 1 0.4477 0.627 0.688 0.000 0.000 0.312
#> SRR1643192 1 0.4477 0.627 0.688 0.000 0.000 0.312
#> SRR1643193 1 0.4331 0.654 0.712 0.000 0.000 0.288
#> SRR1643194 1 0.4331 0.654 0.712 0.000 0.000 0.288
#> SRR1643195 4 0.3486 0.735 0.188 0.000 0.000 0.812
#> SRR1643196 4 0.3400 0.742 0.180 0.000 0.000 0.820
#> SRR1643197 1 0.4477 0.627 0.688 0.000 0.000 0.312
#> SRR1643198 1 0.4477 0.627 0.688 0.000 0.000 0.312
#> SRR1643199 1 0.4356 0.653 0.708 0.000 0.000 0.292
#> SRR1643200 1 0.4356 0.653 0.708 0.000 0.000 0.292
#> SRR1643201 1 0.4331 0.654 0.712 0.000 0.000 0.288
#> SRR1643202 1 0.4331 0.654 0.712 0.000 0.000 0.288
#> SRR1643203 1 0.4072 0.689 0.748 0.000 0.000 0.252
#> SRR1643204 1 0.4072 0.689 0.748 0.000 0.000 0.252
#> SRR1643205 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643206 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643207 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643208 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643209 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643210 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643211 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643212 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643213 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643214 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643215 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643216 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643217 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643218 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643219 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643220 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643221 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643222 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643223 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643224 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643225 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643226 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643227 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643228 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643229 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643230 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643231 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643232 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643233 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643234 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643235 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643236 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643237 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643238 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643239 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643240 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643241 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643242 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643243 3 0.0188 0.997 0.004 0.000 0.996 0.000
#> SRR1643245 3 0.0188 0.997 0.004 0.000 0.996 0.000
#> SRR1643246 3 0.0188 0.997 0.004 0.000 0.996 0.000
#> SRR1643247 3 0.0188 0.997 0.004 0.000 0.996 0.000
#> SRR1643248 3 0.0000 0.999 0.000 0.000 1.000 0.000
#> SRR1643249 3 0.0524 0.984 0.008 0.000 0.988 0.004
#> SRR1643250 4 0.1389 0.843 0.048 0.000 0.000 0.952
#> SRR1643251 4 0.1118 0.849 0.036 0.000 0.000 0.964
#> SRR1643252 4 0.0921 0.853 0.028 0.000 0.000 0.972
#> SRR1643253 4 0.1302 0.845 0.044 0.000 0.000 0.956
#> SRR1643254 4 0.0707 0.856 0.020 0.000 0.000 0.980
#> SRR1643255 4 0.1022 0.851 0.032 0.000 0.000 0.968
#> SRR1643256 4 0.0707 0.856 0.020 0.000 0.000 0.980
#> SRR1643257 4 0.1211 0.847 0.040 0.000 0.000 0.960
#> SRR1643258 4 0.1474 0.840 0.052 0.000 0.000 0.948
#> SRR1643259 4 0.1389 0.843 0.048 0.000 0.000 0.952
#> SRR1643260 4 0.0707 0.856 0.020 0.000 0.000 0.980
#> SRR1643261 4 0.1474 0.841 0.052 0.000 0.000 0.948
#> SRR1643262 4 0.0188 0.862 0.004 0.000 0.000 0.996
#> SRR1643263 4 0.0188 0.862 0.004 0.000 0.000 0.996
#> SRR1643264 4 0.1118 0.849 0.036 0.000 0.000 0.964
#> SRR1643266 4 0.0188 0.862 0.004 0.000 0.000 0.996
#> SRR1643267 4 0.0336 0.861 0.008 0.000 0.000 0.992
#> SRR1643268 4 0.0188 0.862 0.004 0.000 0.000 0.996
#> SRR1643269 4 0.0188 0.862 0.004 0.000 0.000 0.996
#> SRR1643270 4 0.1637 0.835 0.060 0.000 0.000 0.940
#> SRR1643271 4 0.0188 0.862 0.004 0.000 0.000 0.996
#> SRR1643272 4 0.0188 0.862 0.004 0.000 0.000 0.996
#> SRR1643273 4 0.4564 0.579 0.328 0.000 0.000 0.672
#> SRR1643274 4 0.4564 0.579 0.328 0.000 0.000 0.672
#> SRR1643275 4 0.4564 0.579 0.328 0.000 0.000 0.672
#> SRR1643276 4 0.4564 0.579 0.328 0.000 0.000 0.672
#> SRR1643277 4 0.4564 0.579 0.328 0.000 0.000 0.672
#> SRR1643278 4 0.4564 0.579 0.328 0.000 0.000 0.672
#> SRR1643279 4 0.4564 0.579 0.328 0.000 0.000 0.672
#> SRR1643280 4 0.4564 0.579 0.328 0.000 0.000 0.672
#> SRR1643281 4 0.4564 0.579 0.328 0.000 0.000 0.672
#> SRR1643282 4 0.4564 0.579 0.328 0.000 0.000 0.672
#> SRR1643283 4 0.4564 0.579 0.328 0.000 0.000 0.672
#> SRR1643284 4 0.4564 0.579 0.328 0.000 0.000 0.672
#> SRR1643285 4 0.4564 0.579 0.328 0.000 0.000 0.672
#> SRR1643286 4 0.4564 0.579 0.328 0.000 0.000 0.672
#> SRR1643287 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643288 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643289 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643290 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643291 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643292 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643293 4 0.0188 0.862 0.004 0.000 0.000 0.996
#> SRR1643294 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643295 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643296 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643297 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643298 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643299 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643300 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643301 4 0.4564 0.579 0.328 0.000 0.000 0.672
#> SRR1643302 4 0.4500 0.598 0.316 0.000 0.000 0.684
#> SRR1643303 4 0.4500 0.598 0.316 0.000 0.000 0.684
#> SRR1643304 4 0.4522 0.592 0.320 0.000 0.000 0.680
#> SRR1643305 4 0.4543 0.586 0.324 0.000 0.000 0.676
#> SRR1643306 4 0.4564 0.579 0.328 0.000 0.000 0.672
#> SRR1643307 4 0.4564 0.579 0.328 0.000 0.000 0.672
#> SRR1643308 4 0.4543 0.586 0.324 0.000 0.000 0.676
#> SRR1643309 4 0.4477 0.604 0.312 0.000 0.000 0.688
#> SRR1643310 4 0.4543 0.586 0.324 0.000 0.000 0.676
#> SRR1643311 4 0.4543 0.586 0.324 0.000 0.000 0.676
#> SRR1643312 4 0.4543 0.586 0.324 0.000 0.000 0.676
#> SRR1643313 4 0.4522 0.592 0.320 0.000 0.000 0.680
#> SRR1643314 4 0.4500 0.597 0.316 0.000 0.000 0.684
#> SRR1643315 4 0.4522 0.591 0.320 0.000 0.000 0.680
#> SRR1643316 4 0.4477 0.603 0.312 0.000 0.000 0.688
#> SRR1643317 4 0.4477 0.602 0.312 0.000 0.000 0.688
#> SRR1643318 4 0.4543 0.586 0.324 0.000 0.000 0.676
#> SRR1643319 4 0.4543 0.586 0.324 0.000 0.000 0.676
#> SRR1643320 4 0.4454 0.607 0.308 0.000 0.000 0.692
#> SRR1643321 4 0.4454 0.607 0.308 0.000 0.000 0.692
#> SRR1643322 4 0.4477 0.602 0.312 0.000 0.000 0.688
#> SRR1643323 4 0.4477 0.603 0.312 0.000 0.000 0.688
#> SRR1643324 4 0.4522 0.591 0.320 0.000 0.000 0.680
#> SRR1643325 4 0.4522 0.592 0.320 0.000 0.000 0.680
#> SRR1643326 4 0.4500 0.597 0.316 0.000 0.000 0.684
#> SRR1643327 4 0.4500 0.597 0.316 0.000 0.000 0.684
#> SRR1643328 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643329 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643330 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643331 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643332 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643333 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643334 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643335 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643336 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643337 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643338 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643339 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643340 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643341 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643342 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643343 1 0.4500 0.614 0.684 0.000 0.000 0.316
#> SRR1643344 1 0.4477 0.620 0.688 0.000 0.000 0.312
#> SRR1643345 1 0.4522 0.607 0.680 0.000 0.000 0.320
#> SRR1643346 1 0.4500 0.614 0.684 0.000 0.000 0.316
#> SRR1643347 1 0.4522 0.607 0.680 0.000 0.000 0.320
#> SRR1643348 1 0.4500 0.614 0.684 0.000 0.000 0.316
#> SRR1643349 1 0.4500 0.614 0.684 0.000 0.000 0.316
#> SRR1643350 1 0.4500 0.614 0.684 0.000 0.000 0.316
#> SRR1643351 1 0.4522 0.607 0.680 0.000 0.000 0.320
#> SRR1643352 1 0.4522 0.607 0.680 0.000 0.000 0.320
#> SRR1643353 1 0.4522 0.607 0.680 0.000 0.000 0.320
#> SRR1643354 1 0.4522 0.607 0.680 0.000 0.000 0.320
#> SRR1643355 1 0.4522 0.607 0.680 0.000 0.000 0.320
#> SRR1643356 1 0.4543 0.599 0.676 0.000 0.000 0.324
#> SRR1643357 1 0.4522 0.607 0.680 0.000 0.000 0.320
#> SRR1643358 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643359 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643360 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643361 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643362 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643363 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643364 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643365 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643366 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643367 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643368 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643369 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643370 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643371 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643372 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643373 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643374 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643375 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643376 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643377 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643378 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643379 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643380 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643381 4 0.2469 0.802 0.108 0.000 0.000 0.892
#> SRR1643382 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643383 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643384 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643385 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643386 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643387 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643388 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643389 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643390 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643391 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643392 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643393 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643394 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643395 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643396 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643397 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643398 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643399 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643400 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643401 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643402 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643403 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643404 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643405 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643406 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643407 1 0.0469 0.841 0.988 0.000 0.000 0.012
#> SRR1643408 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643409 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643410 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643411 1 0.0469 0.841 0.988 0.000 0.000 0.012
#> SRR1643412 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643413 1 0.0469 0.841 0.988 0.000 0.000 0.012
#> SRR1643414 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643415 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643416 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643417 1 0.0336 0.842 0.992 0.000 0.000 0.008
#> SRR1643418 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643419 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643420 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643421 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643422 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643423 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643424 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643425 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643426 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643427 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643428 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643429 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643430 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643431 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643432 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643433 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643434 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643435 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643436 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643437 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643438 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643439 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643440 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643441 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643442 4 0.0000 0.863 0.000 0.000 0.000 1.000
#> SRR1643443 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643444 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643445 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643446 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643447 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643448 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643449 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643450 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643451 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643452 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643453 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643454 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643455 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643456 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643457 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643458 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643459 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643460 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643461 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643462 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643463 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643464 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643466 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643467 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643468 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643469 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643470 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643471 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643472 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643473 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643474 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643475 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643477 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643478 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643479 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643480 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643481 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643482 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643483 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643484 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643485 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643486 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643487 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643488 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643489 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643490 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643491 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643492 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643493 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643494 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643495 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643496 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643497 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643498 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643499 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643500 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643501 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643502 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643503 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643504 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643505 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643506 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643507 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643508 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643509 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643510 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643511 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643512 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643513 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643531 2 0.0336 0.996 0.008 0.992 0.000 0.000
#> SRR1643532 2 0.0336 0.996 0.008 0.992 0.000 0.000
#> SRR1643533 2 0.0336 0.996 0.008 0.992 0.000 0.000
#> SRR1643534 2 0.0336 0.996 0.008 0.992 0.000 0.000
#> SRR1643535 2 0.0336 0.996 0.008 0.992 0.000 0.000
#> SRR1643536 2 0.0336 0.996 0.008 0.992 0.000 0.000
#> SRR1643537 2 0.0336 0.996 0.008 0.992 0.000 0.000
#> SRR1643538 2 0.0336 0.996 0.008 0.992 0.000 0.000
#> SRR1643539 2 0.0336 0.996 0.008 0.992 0.000 0.000
#> SRR1643540 2 0.0336 0.996 0.008 0.992 0.000 0.000
#> SRR1643541 2 0.0336 0.996 0.008 0.992 0.000 0.000
#> SRR1643542 2 0.0336 0.996 0.008 0.992 0.000 0.000
#> SRR1643543 2 0.0336 0.996 0.008 0.992 0.000 0.000
#> SRR1643544 2 0.0336 0.996 0.008 0.992 0.000 0.000
#> SRR1643514 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643515 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643516 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643517 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643518 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643519 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643520 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643521 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643522 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643523 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643524 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643525 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643526 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643527 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643528 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643529 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643530 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643545 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643546 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643547 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643548 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643549 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643550 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643551 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643552 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643553 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643554 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643555 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643556 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643558 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643559 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643560 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643561 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643562 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643563 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643564 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643565 2 0.0000 0.998 0.000 1.000 0.000 0.000
#> SRR1643566 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643567 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643568 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643569 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643570 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643571 2 0.0188 0.998 0.004 0.996 0.000 0.000
#> SRR1643572 2 0.0188 0.998 0.004 0.996 0.000 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 5 0.2648 0.917 0.152 0.000 0.00 0.000 0.848
#> SRR1643168 5 0.2690 0.911 0.156 0.000 0.00 0.000 0.844
#> SRR1643169 5 0.2648 0.917 0.152 0.000 0.00 0.000 0.848
#> SRR1643170 5 0.2690 0.911 0.156 0.000 0.00 0.000 0.844
#> SRR1643171 5 0.1851 0.978 0.088 0.000 0.00 0.000 0.912
#> SRR1643172 5 0.1851 0.978 0.088 0.000 0.00 0.000 0.912
#> SRR1643173 5 0.1851 0.978 0.088 0.000 0.00 0.000 0.912
#> SRR1643174 5 0.1851 0.978 0.088 0.000 0.00 0.000 0.912
#> SRR1643175 1 0.2824 0.847 0.864 0.000 0.00 0.116 0.020
#> SRR1643176 1 0.2824 0.847 0.864 0.000 0.00 0.116 0.020
#> SRR1643177 1 0.2824 0.847 0.864 0.000 0.00 0.116 0.020
#> SRR1643178 1 0.2824 0.847 0.864 0.000 0.00 0.116 0.020
#> SRR1643180 5 0.2516 0.934 0.140 0.000 0.00 0.000 0.860
#> SRR1643181 5 0.2605 0.925 0.148 0.000 0.00 0.000 0.852
#> SRR1643182 5 0.2561 0.930 0.144 0.000 0.00 0.000 0.856
#> SRR1643183 5 0.2280 0.954 0.120 0.000 0.00 0.000 0.880
#> SRR1643184 5 0.2230 0.958 0.116 0.000 0.00 0.000 0.884
#> SRR1643185 5 0.2280 0.954 0.120 0.000 0.00 0.000 0.880
#> SRR1643186 5 0.2179 0.961 0.112 0.000 0.00 0.000 0.888
#> SRR1643187 1 0.2690 0.781 0.844 0.000 0.00 0.000 0.156
#> SRR1643188 1 0.2690 0.781 0.844 0.000 0.00 0.000 0.156
#> SRR1643189 1 0.2690 0.781 0.844 0.000 0.00 0.000 0.156
#> SRR1643190 1 0.2690 0.781 0.844 0.000 0.00 0.000 0.156
#> SRR1643191 1 0.2806 0.799 0.844 0.000 0.00 0.004 0.152
#> SRR1643192 1 0.2806 0.799 0.844 0.000 0.00 0.004 0.152
#> SRR1643193 1 0.2516 0.795 0.860 0.000 0.00 0.000 0.140
#> SRR1643194 1 0.2516 0.795 0.860 0.000 0.00 0.000 0.140
#> SRR1643195 4 0.3612 0.627 0.268 0.000 0.00 0.732 0.000
#> SRR1643196 4 0.3452 0.676 0.244 0.000 0.00 0.756 0.000
#> SRR1643197 1 0.2763 0.803 0.848 0.000 0.00 0.004 0.148
#> SRR1643198 1 0.2806 0.799 0.844 0.000 0.00 0.004 0.152
#> SRR1643199 1 0.2732 0.790 0.840 0.000 0.00 0.000 0.160
#> SRR1643200 1 0.2732 0.790 0.840 0.000 0.00 0.000 0.160
#> SRR1643201 1 0.1410 0.846 0.940 0.000 0.00 0.000 0.060
#> SRR1643202 1 0.1410 0.846 0.940 0.000 0.00 0.000 0.060
#> SRR1643203 1 0.2732 0.777 0.840 0.000 0.00 0.000 0.160
#> SRR1643204 1 0.2732 0.777 0.840 0.000 0.00 0.000 0.160
#> SRR1643205 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643206 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643207 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643208 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643209 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643210 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643211 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643212 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643213 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643214 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643215 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643216 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643217 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643218 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643219 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643220 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643221 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643222 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643223 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643224 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643225 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643226 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643227 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643228 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643229 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643230 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643231 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643232 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643233 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643234 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643235 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643236 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643237 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643238 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643239 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643240 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643241 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643242 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643243 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643245 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643246 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643247 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643248 3 0.0000 0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643249 3 0.0671 0.975 0.016 0.000 0.98 0.000 0.004
#> SRR1643250 4 0.1341 0.937 0.056 0.000 0.00 0.944 0.000
#> SRR1643251 4 0.1410 0.933 0.060 0.000 0.00 0.940 0.000
#> SRR1643252 4 0.1341 0.937 0.056 0.000 0.00 0.944 0.000
#> SRR1643253 4 0.1410 0.933 0.060 0.000 0.00 0.940 0.000
#> SRR1643254 4 0.1197 0.943 0.048 0.000 0.00 0.952 0.000
#> SRR1643255 4 0.1341 0.937 0.056 0.000 0.00 0.944 0.000
#> SRR1643256 4 0.1270 0.940 0.052 0.000 0.00 0.948 0.000
#> SRR1643257 4 0.1410 0.933 0.060 0.000 0.00 0.940 0.000
#> SRR1643258 4 0.1341 0.937 0.056 0.000 0.00 0.944 0.000
#> SRR1643259 4 0.1544 0.925 0.068 0.000 0.00 0.932 0.000
#> SRR1643260 4 0.1121 0.945 0.044 0.000 0.00 0.956 0.000
#> SRR1643261 4 0.1544 0.926 0.068 0.000 0.00 0.932 0.000
#> SRR1643262 4 0.0609 0.958 0.020 0.000 0.00 0.980 0.000
#> SRR1643263 4 0.0609 0.958 0.020 0.000 0.00 0.980 0.000
#> SRR1643264 4 0.1121 0.946 0.044 0.000 0.00 0.956 0.000
#> SRR1643266 4 0.0609 0.958 0.020 0.000 0.00 0.980 0.000
#> SRR1643267 4 0.0880 0.953 0.032 0.000 0.00 0.968 0.000
#> SRR1643268 4 0.0609 0.958 0.020 0.000 0.00 0.980 0.000
#> SRR1643269 4 0.0794 0.955 0.028 0.000 0.00 0.972 0.000
#> SRR1643270 4 0.1341 0.938 0.056 0.000 0.00 0.944 0.000
#> SRR1643271 4 0.0609 0.958 0.020 0.000 0.00 0.980 0.000
#> SRR1643272 4 0.0609 0.958 0.020 0.000 0.00 0.980 0.000
#> SRR1643273 1 0.2674 0.882 0.856 0.000 0.00 0.140 0.004
#> SRR1643274 1 0.2806 0.880 0.844 0.000 0.00 0.152 0.004
#> SRR1643275 1 0.3081 0.878 0.832 0.000 0.00 0.156 0.012
#> SRR1643276 1 0.2890 0.876 0.836 0.000 0.00 0.160 0.004
#> SRR1643277 1 0.3183 0.878 0.828 0.000 0.00 0.156 0.016
#> SRR1643278 1 0.2763 0.880 0.848 0.000 0.00 0.148 0.004
#> SRR1643279 1 0.2806 0.879 0.844 0.000 0.00 0.152 0.004
#> SRR1643280 1 0.2806 0.879 0.844 0.000 0.00 0.152 0.004
#> SRR1643281 1 0.2930 0.874 0.832 0.000 0.00 0.164 0.004
#> SRR1643282 1 0.2806 0.879 0.844 0.000 0.00 0.152 0.004
#> SRR1643283 1 0.2806 0.879 0.844 0.000 0.00 0.152 0.004
#> SRR1643284 1 0.3039 0.879 0.836 0.000 0.00 0.152 0.012
#> SRR1643285 1 0.2763 0.880 0.848 0.000 0.00 0.148 0.004
#> SRR1643286 1 0.3013 0.876 0.832 0.000 0.00 0.160 0.008
#> SRR1643287 4 0.0404 0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643288 4 0.0404 0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643289 4 0.0404 0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643290 4 0.0404 0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643291 4 0.0404 0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643292 4 0.0404 0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643293 4 0.0510 0.959 0.016 0.000 0.00 0.984 0.000
#> SRR1643294 4 0.0404 0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643295 4 0.0404 0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643296 4 0.0404 0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643297 4 0.0404 0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643298 4 0.0404 0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643299 4 0.0404 0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643300 4 0.0404 0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643301 1 0.3231 0.851 0.800 0.000 0.00 0.196 0.004
#> SRR1643302 1 0.3398 0.831 0.780 0.000 0.00 0.216 0.004
#> SRR1643303 1 0.3336 0.817 0.772 0.000 0.00 0.228 0.000
#> SRR1643304 1 0.3074 0.852 0.804 0.000 0.00 0.196 0.000
#> SRR1643305 1 0.2813 0.871 0.832 0.000 0.00 0.168 0.000
#> SRR1643306 1 0.2970 0.871 0.828 0.000 0.00 0.168 0.004
#> SRR1643307 1 0.3461 0.821 0.772 0.000 0.00 0.224 0.004
#> SRR1643308 1 0.3039 0.854 0.808 0.000 0.00 0.192 0.000
#> SRR1643309 1 0.3689 0.777 0.740 0.000 0.00 0.256 0.004
#> SRR1643310 1 0.2852 0.869 0.828 0.000 0.00 0.172 0.000
#> SRR1643311 1 0.2966 0.860 0.816 0.000 0.00 0.184 0.000
#> SRR1643312 1 0.2852 0.868 0.828 0.000 0.00 0.172 0.000
#> SRR1643313 1 0.3661 0.747 0.724 0.000 0.00 0.276 0.000
#> SRR1643314 1 0.2824 0.885 0.864 0.000 0.00 0.116 0.020
#> SRR1643315 1 0.2873 0.885 0.860 0.000 0.00 0.120 0.020
#> SRR1643316 1 0.3106 0.882 0.840 0.000 0.00 0.140 0.020
#> SRR1643317 1 0.2921 0.885 0.856 0.000 0.00 0.124 0.020
#> SRR1643318 1 0.2873 0.885 0.860 0.000 0.00 0.120 0.020
#> SRR1643319 1 0.3106 0.883 0.840 0.000 0.00 0.140 0.020
#> SRR1643320 1 0.3106 0.882 0.840 0.000 0.00 0.140 0.020
#> SRR1643321 1 0.2969 0.884 0.852 0.000 0.00 0.128 0.020
#> SRR1643322 1 0.2921 0.885 0.856 0.000 0.00 0.124 0.020
#> SRR1643323 1 0.2873 0.885 0.860 0.000 0.00 0.120 0.020
#> SRR1643324 1 0.3194 0.880 0.832 0.000 0.00 0.148 0.020
#> SRR1643325 1 0.2873 0.885 0.860 0.000 0.00 0.120 0.020
#> SRR1643326 1 0.2969 0.884 0.852 0.000 0.00 0.128 0.020
#> SRR1643327 1 0.2873 0.885 0.860 0.000 0.00 0.120 0.020
#> SRR1643328 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643329 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643330 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643331 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643332 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643333 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643334 5 0.2074 0.967 0.104 0.000 0.00 0.000 0.896
#> SRR1643335 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643336 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643337 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643338 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643339 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643340 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643341 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643342 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643343 1 0.1205 0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643344 1 0.1282 0.855 0.952 0.000 0.00 0.004 0.044
#> SRR1643345 1 0.1205 0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643346 1 0.1205 0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643347 1 0.1205 0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643348 1 0.1205 0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643349 1 0.1205 0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643350 1 0.1205 0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643351 1 0.1205 0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643352 1 0.1205 0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643353 1 0.1205 0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643354 1 0.1205 0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643355 1 0.1205 0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643356 1 0.1205 0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643357 1 0.1205 0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643358 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643359 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643360 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643361 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643362 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643363 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643364 4 0.0510 0.960 0.016 0.000 0.00 0.984 0.000
#> SRR1643365 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643366 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643367 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643368 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643369 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643370 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643371 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643372 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643373 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643374 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643375 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643376 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643377 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643378 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643379 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643380 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643381 4 0.2722 0.868 0.108 0.000 0.00 0.872 0.020
#> SRR1643382 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643383 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643384 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643385 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643386 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643387 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643388 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643389 4 0.0290 0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643390 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643391 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643392 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643393 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643394 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643395 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643396 5 0.1732 0.982 0.080 0.000 0.00 0.000 0.920
#> SRR1643397 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643398 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643399 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643400 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643401 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643402 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643403 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643404 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643405 5 0.1792 0.980 0.084 0.000 0.00 0.000 0.916
#> SRR1643406 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643407 5 0.2068 0.973 0.092 0.000 0.00 0.004 0.904
#> SRR1643408 5 0.1908 0.975 0.092 0.000 0.00 0.000 0.908
#> SRR1643409 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643410 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643411 5 0.1892 0.979 0.080 0.000 0.00 0.004 0.916
#> SRR1643412 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643413 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643414 5 0.1851 0.979 0.088 0.000 0.00 0.000 0.912
#> SRR1643415 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643416 5 0.1732 0.982 0.080 0.000 0.00 0.000 0.920
#> SRR1643417 5 0.1671 0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643418 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643419 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643420 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643421 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643422 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643423 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643424 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643425 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643426 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643427 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643428 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643429 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643430 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643431 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643432 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643433 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643434 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643435 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643436 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643437 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643438 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643439 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643440 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643441 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643442 4 0.2036 0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643443 2 0.0912 0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643444 2 0.0912 0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643445 2 0.0912 0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643446 2 0.0912 0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643447 2 0.0912 0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643448 2 0.0912 0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643449 2 0.0912 0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643450 2 0.0912 0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643451 2 0.0912 0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643452 2 0.0912 0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643453 2 0.0912 0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643454 2 0.0912 0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643455 2 0.0912 0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643456 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643457 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643458 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643459 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643460 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643461 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643462 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643463 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643464 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643466 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643467 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643468 2 0.0566 0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643469 2 0.0566 0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643470 2 0.0566 0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643471 2 0.0566 0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643472 2 0.0566 0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643473 2 0.0566 0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643474 2 0.0566 0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643475 2 0.0566 0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643477 2 0.0566 0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643478 2 0.0566 0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643479 2 0.0566 0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643480 2 0.0566 0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643481 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643482 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643483 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643484 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643485 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643486 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643487 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643488 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643489 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643490 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643491 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643492 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643493 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643494 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643495 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643496 2 0.0451 0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643497 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643498 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643499 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643500 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643501 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643502 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643503 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643504 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643505 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643506 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643507 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643508 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643509 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643510 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643511 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643512 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643513 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643531 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643532 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643533 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643534 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643535 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643536 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643537 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643538 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643539 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643540 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643541 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643542 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643543 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643544 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643514 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643515 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643516 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643517 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643518 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643519 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643520 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643521 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643522 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643523 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643524 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643525 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643526 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643527 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643528 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643529 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643530 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643545 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643546 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643547 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643548 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643549 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643550 2 0.0404 0.987 0.000 0.988 0.00 0.000 0.012
#> SRR1643551 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643552 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643553 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643554 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643555 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643556 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643558 2 0.0162 0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643559 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643560 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643561 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643562 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643563 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643564 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643565 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643566 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643567 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643568 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643569 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643570 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643571 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643572 2 0.0798 0.986 0.008 0.976 0.00 0.000 0.016
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 6 0.1863 0.90123 0.104 0.000 0.000 0.000 0.000 0.896
#> SRR1643168 6 0.1863 0.90129 0.104 0.000 0.000 0.000 0.000 0.896
#> SRR1643169 6 0.1957 0.89124 0.112 0.000 0.000 0.000 0.000 0.888
#> SRR1643170 6 0.1863 0.90123 0.104 0.000 0.000 0.000 0.000 0.896
#> SRR1643171 6 0.0458 0.97382 0.016 0.000 0.000 0.000 0.000 0.984
#> SRR1643172 6 0.0458 0.97382 0.016 0.000 0.000 0.000 0.000 0.984
#> SRR1643173 6 0.0547 0.97227 0.020 0.000 0.000 0.000 0.000 0.980
#> SRR1643174 6 0.0547 0.97227 0.020 0.000 0.000 0.000 0.000 0.980
#> SRR1643175 1 0.1007 0.87611 0.956 0.000 0.000 0.044 0.000 0.000
#> SRR1643176 1 0.1007 0.87611 0.956 0.000 0.000 0.044 0.000 0.000
#> SRR1643177 1 0.0937 0.87614 0.960 0.000 0.000 0.040 0.000 0.000
#> SRR1643178 1 0.0937 0.87614 0.960 0.000 0.000 0.040 0.000 0.000
#> SRR1643180 6 0.2003 0.89078 0.116 0.000 0.000 0.000 0.000 0.884
#> SRR1643181 6 0.2003 0.89078 0.116 0.000 0.000 0.000 0.000 0.884
#> SRR1643182 6 0.2003 0.89078 0.116 0.000 0.000 0.000 0.000 0.884
#> SRR1643183 6 0.1663 0.92144 0.088 0.000 0.000 0.000 0.000 0.912
#> SRR1643184 6 0.1663 0.92144 0.088 0.000 0.000 0.000 0.000 0.912
#> SRR1643185 6 0.1610 0.92328 0.084 0.000 0.000 0.000 0.000 0.916
#> SRR1643186 6 0.1501 0.93204 0.076 0.000 0.000 0.000 0.000 0.924
#> SRR1643187 1 0.2340 0.79980 0.852 0.000 0.000 0.000 0.000 0.148
#> SRR1643188 1 0.2340 0.79980 0.852 0.000 0.000 0.000 0.000 0.148
#> SRR1643189 1 0.2340 0.79980 0.852 0.000 0.000 0.000 0.000 0.148
#> SRR1643190 1 0.2340 0.79980 0.852 0.000 0.000 0.000 0.000 0.148
#> SRR1643191 1 0.1610 0.85028 0.916 0.000 0.000 0.000 0.000 0.084
#> SRR1643192 1 0.1610 0.85028 0.916 0.000 0.000 0.000 0.000 0.084
#> SRR1643193 1 0.2178 0.81368 0.868 0.000 0.000 0.000 0.000 0.132
#> SRR1643194 1 0.2178 0.81368 0.868 0.000 0.000 0.000 0.000 0.132
#> SRR1643195 4 0.3851 0.10070 0.460 0.000 0.000 0.540 0.000 0.000
#> SRR1643196 4 0.3843 0.12718 0.452 0.000 0.000 0.548 0.000 0.000
#> SRR1643197 1 0.1610 0.85028 0.916 0.000 0.000 0.000 0.000 0.084
#> SRR1643198 1 0.1610 0.85028 0.916 0.000 0.000 0.000 0.000 0.084
#> SRR1643199 1 0.1714 0.84375 0.908 0.000 0.000 0.000 0.000 0.092
#> SRR1643200 1 0.1714 0.84375 0.908 0.000 0.000 0.000 0.000 0.092
#> SRR1643201 1 0.0937 0.87229 0.960 0.000 0.000 0.000 0.000 0.040
#> SRR1643202 1 0.0937 0.87229 0.960 0.000 0.000 0.000 0.000 0.040
#> SRR1643203 1 0.2378 0.79639 0.848 0.000 0.000 0.000 0.000 0.152
#> SRR1643204 1 0.2378 0.79639 0.848 0.000 0.000 0.000 0.000 0.152
#> SRR1643205 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643206 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643207 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643208 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643209 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643210 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643211 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643212 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643213 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643214 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643215 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643216 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643217 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643218 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643219 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643220 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643221 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643222 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643223 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643224 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643225 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643226 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643227 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643228 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643229 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643230 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643231 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643232 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643233 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643234 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643235 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643236 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643237 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643238 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643239 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643240 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643241 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643242 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643243 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643245 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643246 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643247 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643248 3 0.0000 0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643249 3 0.0363 0.98530 0.000 0.000 0.988 0.000 0.000 0.012
#> SRR1643250 1 0.3843 0.30465 0.548 0.000 0.000 0.452 0.000 0.000
#> SRR1643251 1 0.3843 0.30465 0.548 0.000 0.000 0.452 0.000 0.000
#> SRR1643252 1 0.3847 0.29292 0.544 0.000 0.000 0.456 0.000 0.000
#> SRR1643253 1 0.3838 0.31570 0.552 0.000 0.000 0.448 0.000 0.000
#> SRR1643254 1 0.3843 0.30465 0.548 0.000 0.000 0.452 0.000 0.000
#> SRR1643255 1 0.3838 0.31568 0.552 0.000 0.000 0.448 0.000 0.000
#> SRR1643256 1 0.3838 0.31570 0.552 0.000 0.000 0.448 0.000 0.000
#> SRR1643257 1 0.3843 0.30465 0.548 0.000 0.000 0.452 0.000 0.000
#> SRR1643258 1 0.3838 0.31568 0.552 0.000 0.000 0.448 0.000 0.000
#> SRR1643259 1 0.3843 0.30465 0.548 0.000 0.000 0.452 0.000 0.000
#> SRR1643260 1 0.3843 0.30465 0.548 0.000 0.000 0.452 0.000 0.000
#> SRR1643261 1 0.3833 0.32605 0.556 0.000 0.000 0.444 0.000 0.000
#> SRR1643262 4 0.0865 0.90444 0.036 0.000 0.000 0.964 0.000 0.000
#> SRR1643263 4 0.1204 0.88881 0.056 0.000 0.000 0.944 0.000 0.000
#> SRR1643264 4 0.1075 0.89662 0.048 0.000 0.000 0.952 0.000 0.000
#> SRR1643266 4 0.0865 0.90444 0.036 0.000 0.000 0.964 0.000 0.000
#> SRR1643267 4 0.0865 0.90444 0.036 0.000 0.000 0.964 0.000 0.000
#> SRR1643268 4 0.0865 0.90340 0.036 0.000 0.000 0.964 0.000 0.000
#> SRR1643269 4 0.0937 0.90188 0.040 0.000 0.000 0.960 0.000 0.000
#> SRR1643270 4 0.1204 0.89063 0.056 0.000 0.000 0.944 0.000 0.000
#> SRR1643271 4 0.0865 0.90444 0.036 0.000 0.000 0.964 0.000 0.000
#> SRR1643272 4 0.0865 0.90444 0.036 0.000 0.000 0.964 0.000 0.000
#> SRR1643273 1 0.1204 0.87956 0.944 0.000 0.000 0.056 0.000 0.000
#> SRR1643274 1 0.1327 0.87806 0.936 0.000 0.000 0.064 0.000 0.000
#> SRR1643275 1 0.1007 0.88098 0.956 0.000 0.000 0.044 0.000 0.000
#> SRR1643276 1 0.1387 0.87684 0.932 0.000 0.000 0.068 0.000 0.000
#> SRR1643277 1 0.0790 0.88144 0.968 0.000 0.000 0.032 0.000 0.000
#> SRR1643278 1 0.1387 0.87684 0.932 0.000 0.000 0.068 0.000 0.000
#> SRR1643279 1 0.1387 0.87684 0.932 0.000 0.000 0.068 0.000 0.000
#> SRR1643280 1 0.1327 0.87814 0.936 0.000 0.000 0.064 0.000 0.000
#> SRR1643281 1 0.1327 0.87806 0.936 0.000 0.000 0.064 0.000 0.000
#> SRR1643282 1 0.1267 0.87890 0.940 0.000 0.000 0.060 0.000 0.000
#> SRR1643283 1 0.1327 0.87806 0.936 0.000 0.000 0.064 0.000 0.000
#> SRR1643284 1 0.1141 0.88022 0.948 0.000 0.000 0.052 0.000 0.000
#> SRR1643285 1 0.1387 0.87684 0.932 0.000 0.000 0.068 0.000 0.000
#> SRR1643286 1 0.1141 0.88027 0.948 0.000 0.000 0.052 0.000 0.000
#> SRR1643287 4 0.2572 0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643288 4 0.2572 0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643289 4 0.2572 0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643290 4 0.2572 0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643291 4 0.2572 0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643292 4 0.2572 0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643293 4 0.2572 0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643294 4 0.2572 0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643295 4 0.2572 0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643296 4 0.2572 0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643297 4 0.2572 0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643298 4 0.2572 0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643299 4 0.2572 0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643300 4 0.2572 0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643301 1 0.1444 0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643302 1 0.1444 0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643303 1 0.1444 0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643304 1 0.1444 0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643305 1 0.1444 0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643306 1 0.1444 0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643307 1 0.1327 0.87754 0.936 0.000 0.000 0.064 0.000 0.000
#> SRR1643308 1 0.1444 0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643309 1 0.1444 0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643310 1 0.1387 0.87684 0.932 0.000 0.000 0.068 0.000 0.000
#> SRR1643311 1 0.1444 0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643312 1 0.1444 0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643313 1 0.1444 0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643314 1 0.0146 0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643315 1 0.0146 0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643316 1 0.0146 0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643317 1 0.0146 0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643318 1 0.0146 0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643319 1 0.0405 0.88023 0.988 0.000 0.000 0.008 0.000 0.004
#> SRR1643320 1 0.0146 0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643321 1 0.0146 0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643322 1 0.0146 0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643323 1 0.0146 0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643324 1 0.0146 0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643325 1 0.0146 0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643326 1 0.0146 0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643327 1 0.0146 0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643328 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643329 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643330 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643331 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643332 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643333 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643334 6 0.1141 0.94974 0.052 0.000 0.000 0.000 0.000 0.948
#> SRR1643335 6 0.0458 0.97363 0.016 0.000 0.000 0.000 0.000 0.984
#> SRR1643336 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643337 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643338 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643339 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643340 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643341 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643342 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643343 1 0.0858 0.87745 0.968 0.000 0.000 0.004 0.000 0.028
#> SRR1643344 1 0.0972 0.87905 0.964 0.000 0.000 0.008 0.000 0.028
#> SRR1643345 1 0.1074 0.88032 0.960 0.000 0.000 0.012 0.000 0.028
#> SRR1643346 1 0.0713 0.87544 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643347 1 0.1074 0.88032 0.960 0.000 0.000 0.012 0.000 0.028
#> SRR1643348 1 0.0858 0.87745 0.968 0.000 0.000 0.004 0.000 0.028
#> SRR1643349 1 0.0713 0.87544 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643350 1 0.0972 0.87915 0.964 0.000 0.000 0.008 0.000 0.028
#> SRR1643351 1 0.1074 0.88032 0.960 0.000 0.000 0.012 0.000 0.028
#> SRR1643352 1 0.1074 0.88032 0.960 0.000 0.000 0.012 0.000 0.028
#> SRR1643353 1 0.1074 0.88032 0.960 0.000 0.000 0.012 0.000 0.028
#> SRR1643354 1 0.0972 0.87905 0.964 0.000 0.000 0.008 0.000 0.028
#> SRR1643355 1 0.0858 0.87745 0.968 0.000 0.000 0.004 0.000 0.028
#> SRR1643356 1 0.1074 0.88032 0.960 0.000 0.000 0.012 0.000 0.028
#> SRR1643357 1 0.1074 0.88032 0.960 0.000 0.000 0.012 0.000 0.028
#> SRR1643358 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643359 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643360 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643361 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643362 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643363 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643364 4 0.3971 -0.00234 0.448 0.000 0.000 0.548 0.004 0.000
#> SRR1643365 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643366 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643367 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643368 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643369 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643370 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643371 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643372 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643373 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643374 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643375 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643376 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643377 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643378 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643379 4 0.0291 0.91840 0.004 0.000 0.000 0.992 0.004 0.000
#> SRR1643380 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643381 1 0.2558 0.78788 0.840 0.000 0.000 0.156 0.004 0.000
#> SRR1643382 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643383 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643384 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643385 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643386 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643387 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643388 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643389 4 0.0146 0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643390 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643391 6 0.0458 0.97318 0.016 0.000 0.000 0.000 0.000 0.984
#> SRR1643392 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643393 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643394 6 0.0458 0.97363 0.016 0.000 0.000 0.000 0.000 0.984
#> SRR1643395 6 0.0547 0.97231 0.020 0.000 0.000 0.000 0.000 0.980
#> SRR1643396 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643397 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643398 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643399 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643400 6 0.0547 0.97184 0.020 0.000 0.000 0.000 0.000 0.980
#> SRR1643401 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643402 6 0.0547 0.97184 0.020 0.000 0.000 0.000 0.000 0.980
#> SRR1643403 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643404 6 0.0458 0.97318 0.016 0.000 0.000 0.000 0.000 0.984
#> SRR1643405 6 0.0632 0.96962 0.024 0.000 0.000 0.000 0.000 0.976
#> SRR1643406 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643407 6 0.1007 0.95533 0.044 0.000 0.000 0.000 0.000 0.956
#> SRR1643408 6 0.0937 0.95899 0.040 0.000 0.000 0.000 0.000 0.960
#> SRR1643409 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643410 6 0.0363 0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643411 6 0.0632 0.96990 0.024 0.000 0.000 0.000 0.000 0.976
#> SRR1643412 6 0.0458 0.97359 0.016 0.000 0.000 0.000 0.000 0.984
#> SRR1643413 6 0.0547 0.97253 0.020 0.000 0.000 0.000 0.000 0.980
#> SRR1643414 6 0.0632 0.96942 0.024 0.000 0.000 0.000 0.000 0.976
#> SRR1643415 6 0.0458 0.97359 0.016 0.000 0.000 0.000 0.000 0.984
#> SRR1643416 6 0.0547 0.97190 0.020 0.000 0.000 0.000 0.000 0.980
#> SRR1643417 6 0.0458 0.97359 0.016 0.000 0.000 0.000 0.000 0.984
#> SRR1643418 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643419 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643420 5 0.1075 0.99506 0.000 0.000 0.000 0.048 0.952 0.000
#> SRR1643421 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643422 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643423 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643424 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643425 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643426 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643427 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643428 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643429 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643430 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643431 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643432 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643433 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643434 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643435 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643436 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643437 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643438 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643439 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643440 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643441 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643442 5 0.1007 0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643443 2 0.0993 0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643444 2 0.0993 0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643445 2 0.0993 0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643446 2 0.0993 0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643447 2 0.0993 0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643448 2 0.0993 0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643449 2 0.0993 0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643450 2 0.0993 0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643451 2 0.0993 0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643452 2 0.0993 0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643453 2 0.1074 0.98028 0.000 0.960 0.000 0.000 0.028 0.012
#> SRR1643454 2 0.0993 0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643455 2 0.0993 0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643456 2 0.0603 0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643457 2 0.0603 0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643458 2 0.0603 0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643459 2 0.0603 0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643460 2 0.0603 0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643461 2 0.0603 0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643462 2 0.0603 0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643463 2 0.0603 0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643464 2 0.0603 0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643466 2 0.0603 0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643467 2 0.0603 0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643468 2 0.0717 0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643469 2 0.0717 0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643470 2 0.0717 0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643471 2 0.0717 0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643472 2 0.0717 0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643473 2 0.0717 0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643474 2 0.0717 0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643475 2 0.0717 0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643477 2 0.0717 0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643478 2 0.0717 0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643479 2 0.0717 0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643480 2 0.0717 0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643481 2 0.0363 0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643482 2 0.0363 0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643483 2 0.0363 0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643484 2 0.0363 0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643485 2 0.0363 0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643486 2 0.0363 0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643487 2 0.0363 0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643488 2 0.0363 0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643489 2 0.0363 0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643490 2 0.0363 0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643491 2 0.0363 0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643492 2 0.0363 0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643493 2 0.0363 0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643494 2 0.0363 0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643495 2 0.0363 0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643496 2 0.0363 0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643497 2 0.0260 0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643498 2 0.0260 0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643499 2 0.0260 0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643500 2 0.0260 0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643501 2 0.0260 0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643502 2 0.0260 0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643503 2 0.0260 0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643504 2 0.0260 0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643505 2 0.0713 0.98225 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643506 2 0.0260 0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643507 2 0.0260 0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643508 2 0.0260 0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643509 2 0.0260 0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643510 2 0.0260 0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643511 2 0.0260 0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643512 2 0.0260 0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643513 2 0.0260 0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643531 2 0.0858 0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643532 2 0.0858 0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643533 2 0.0858 0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643534 2 0.0858 0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643535 2 0.0858 0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643536 2 0.0858 0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643537 2 0.0858 0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643538 2 0.0858 0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643539 2 0.0858 0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643540 2 0.0858 0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643541 2 0.0858 0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643542 2 0.0858 0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643543 2 0.0858 0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643544 2 0.0858 0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643514 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643515 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643516 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643517 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643518 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643519 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643520 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643521 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643522 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643523 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643524 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643525 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643526 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643527 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643528 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643529 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643530 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643545 2 0.0146 0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643546 2 0.0146 0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643547 2 0.0146 0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643548 2 0.0146 0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643549 2 0.0146 0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643550 2 0.0458 0.98311 0.000 0.984 0.000 0.000 0.016 0.000
#> SRR1643551 2 0.0146 0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643552 2 0.0146 0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643553 2 0.0146 0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643554 2 0.0146 0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643555 2 0.0146 0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643556 2 0.0146 0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643558 2 0.0146 0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643559 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643560 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643561 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643562 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643563 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643564 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643565 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643566 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643567 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643568 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643569 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643570 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643571 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643572 2 0.0713 0.98143 0.000 0.972 0.000 0.000 0.028 0.000
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["CV", "NMF"]
# you can also extract it by
# res = res_list["CV:NMF"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'CV' method.
#> Subgroups are detected by 'NMF' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 3.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.4350 0.566 0.566
#> 3 3 0.918 0.899 0.937 0.5046 0.775 0.602
#> 4 4 0.755 0.892 0.894 0.0968 0.827 0.564
#> 5 5 0.823 0.842 0.859 0.0659 1.000 1.000
#> 6 6 0.789 0.779 0.830 0.0498 0.896 0.634
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 3
#> attr(,"optional")
#> [1] 2
There is also optional best \(k\) = 2 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 3 0.1860 0.972 0.052 0.000 0.948
#> SRR1643168 3 0.1753 0.975 0.048 0.000 0.952
#> SRR1643169 3 0.2066 0.965 0.060 0.000 0.940
#> SRR1643170 3 0.1643 0.978 0.044 0.000 0.956
#> SRR1643171 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643172 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643173 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643174 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643175 3 0.6309 -0.100 0.496 0.000 0.504
#> SRR1643176 1 0.6295 0.204 0.528 0.000 0.472
#> SRR1643177 1 0.6286 0.228 0.536 0.000 0.464
#> SRR1643178 1 0.6235 0.322 0.564 0.000 0.436
#> SRR1643180 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643181 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643182 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643183 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643184 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643185 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643186 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643187 1 0.6062 0.466 0.616 0.000 0.384
#> SRR1643188 1 0.6062 0.466 0.616 0.000 0.384
#> SRR1643189 1 0.6140 0.420 0.596 0.000 0.404
#> SRR1643190 1 0.6111 0.439 0.604 0.000 0.396
#> SRR1643191 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643192 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643193 1 0.6140 0.420 0.596 0.000 0.404
#> SRR1643194 1 0.6215 0.356 0.572 0.000 0.428
#> SRR1643195 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643196 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643197 3 0.4452 0.788 0.192 0.000 0.808
#> SRR1643198 3 0.4750 0.747 0.216 0.000 0.784
#> SRR1643199 3 0.1860 0.972 0.052 0.000 0.948
#> SRR1643200 3 0.1860 0.972 0.052 0.000 0.948
#> SRR1643201 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643202 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643203 3 0.4702 0.754 0.212 0.000 0.788
#> SRR1643204 3 0.4887 0.724 0.228 0.000 0.772
#> SRR1643205 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643206 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643207 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643208 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643209 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643210 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643211 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643212 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643213 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643214 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643215 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643216 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643217 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643218 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643219 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643220 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643221 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643222 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643223 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643224 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643225 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643226 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643227 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643228 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643229 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643230 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643231 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643232 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643233 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643234 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643235 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643236 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643237 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643238 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643239 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643240 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643241 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643242 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643243 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643245 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643246 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643247 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643248 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643249 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643250 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643251 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643252 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643253 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643254 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643255 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643256 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643257 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643258 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643259 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643260 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643261 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643262 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643263 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643264 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643266 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643267 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643268 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643269 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643270 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643271 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643272 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643273 1 0.2066 0.858 0.940 0.000 0.060
#> SRR1643274 1 0.0892 0.885 0.980 0.000 0.020
#> SRR1643275 1 0.1964 0.861 0.944 0.000 0.056
#> SRR1643276 1 0.1289 0.878 0.968 0.000 0.032
#> SRR1643277 1 0.2165 0.855 0.936 0.000 0.064
#> SRR1643278 1 0.1529 0.873 0.960 0.000 0.040
#> SRR1643279 1 0.1289 0.878 0.968 0.000 0.032
#> SRR1643280 1 0.1643 0.870 0.956 0.000 0.044
#> SRR1643281 1 0.1163 0.880 0.972 0.000 0.028
#> SRR1643282 1 0.1289 0.878 0.968 0.000 0.032
#> SRR1643283 1 0.1163 0.880 0.972 0.000 0.028
#> SRR1643284 1 0.1289 0.878 0.968 0.000 0.032
#> SRR1643285 1 0.1289 0.878 0.968 0.000 0.032
#> SRR1643286 1 0.1289 0.878 0.968 0.000 0.032
#> SRR1643287 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643288 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643289 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643290 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643291 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643292 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643293 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643294 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643295 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643296 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643297 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643298 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643299 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643300 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643301 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643302 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643303 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643304 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643305 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643306 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643307 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643308 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643309 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643310 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643311 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643312 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643313 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643314 1 0.6260 0.297 0.552 0.000 0.448
#> SRR1643315 1 0.6154 0.410 0.592 0.000 0.408
#> SRR1643316 1 0.5905 0.528 0.648 0.000 0.352
#> SRR1643317 1 0.6008 0.491 0.628 0.000 0.372
#> SRR1643318 1 0.5926 0.521 0.644 0.000 0.356
#> SRR1643319 1 0.5882 0.535 0.652 0.000 0.348
#> SRR1643320 1 0.5859 0.541 0.656 0.000 0.344
#> SRR1643321 1 0.5905 0.528 0.648 0.000 0.352
#> SRR1643322 1 0.5905 0.528 0.648 0.000 0.352
#> SRR1643323 1 0.6140 0.420 0.596 0.000 0.404
#> SRR1643324 1 0.5621 0.595 0.692 0.000 0.308
#> SRR1643325 1 0.6079 0.457 0.612 0.000 0.388
#> SRR1643326 1 0.6026 0.483 0.624 0.000 0.376
#> SRR1643327 1 0.6079 0.457 0.612 0.000 0.388
#> SRR1643328 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643329 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643330 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643331 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643332 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643333 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643334 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643335 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643336 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643337 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643338 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643339 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643340 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643341 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643342 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643343 1 0.5968 0.506 0.636 0.000 0.364
#> SRR1643344 1 0.6095 0.448 0.608 0.000 0.392
#> SRR1643345 1 0.6008 0.491 0.628 0.000 0.372
#> SRR1643346 1 0.5760 0.566 0.672 0.000 0.328
#> SRR1643347 1 0.5948 0.514 0.640 0.000 0.360
#> SRR1643348 1 0.6140 0.419 0.596 0.000 0.404
#> SRR1643349 1 0.5988 0.499 0.632 0.000 0.368
#> SRR1643350 1 0.5988 0.498 0.632 0.000 0.368
#> SRR1643351 1 0.6045 0.474 0.620 0.000 0.380
#> SRR1643352 1 0.5948 0.513 0.640 0.000 0.360
#> SRR1643353 1 0.5859 0.541 0.656 0.000 0.344
#> SRR1643354 1 0.5785 0.560 0.668 0.000 0.332
#> SRR1643355 1 0.5785 0.560 0.668 0.000 0.332
#> SRR1643356 1 0.6140 0.419 0.596 0.000 0.404
#> SRR1643357 1 0.5968 0.506 0.636 0.000 0.364
#> SRR1643358 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643359 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643360 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643361 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643362 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643363 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643364 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643365 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643366 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643367 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643368 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643369 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643370 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643371 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643372 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643373 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643374 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643375 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643376 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643377 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643378 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643379 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643380 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643381 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643382 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643383 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643384 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643385 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643386 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643387 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643388 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643389 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643390 3 0.2448 0.950 0.076 0.000 0.924
#> SRR1643391 3 0.2711 0.937 0.088 0.000 0.912
#> SRR1643392 3 0.1964 0.969 0.056 0.000 0.944
#> SRR1643393 3 0.2625 0.941 0.084 0.000 0.916
#> SRR1643394 3 0.2537 0.946 0.080 0.000 0.920
#> SRR1643395 3 0.2261 0.958 0.068 0.000 0.932
#> SRR1643396 3 0.2796 0.932 0.092 0.000 0.908
#> SRR1643397 3 0.3116 0.912 0.108 0.000 0.892
#> SRR1643398 3 0.3267 0.902 0.116 0.000 0.884
#> SRR1643399 3 0.2165 0.962 0.064 0.000 0.936
#> SRR1643400 3 0.2448 0.950 0.076 0.000 0.924
#> SRR1643401 3 0.1964 0.969 0.056 0.000 0.944
#> SRR1643402 3 0.2625 0.941 0.084 0.000 0.916
#> SRR1643403 3 0.1964 0.969 0.056 0.000 0.944
#> SRR1643404 3 0.2165 0.962 0.064 0.000 0.936
#> SRR1643405 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643406 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643407 3 0.1753 0.975 0.048 0.000 0.952
#> SRR1643408 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643409 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643410 3 0.1753 0.975 0.048 0.000 0.952
#> SRR1643411 3 0.1643 0.978 0.044 0.000 0.956
#> SRR1643412 3 0.1860 0.972 0.052 0.000 0.948
#> SRR1643413 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643414 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643415 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643416 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643417 3 0.1529 0.980 0.040 0.000 0.960
#> SRR1643418 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643419 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643420 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643421 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643422 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643423 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643424 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643425 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643426 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643427 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643428 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643429 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643430 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643431 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643432 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643433 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643434 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643435 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643436 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643437 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643438 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643439 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643440 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643441 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643442 1 0.0000 0.896 1.000 0.000 0.000
#> SRR1643443 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643444 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643445 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643446 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643447 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643448 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643449 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643450 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643451 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643452 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643453 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643454 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643455 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643456 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643457 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643458 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643459 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643460 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643461 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643462 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643463 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643464 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643466 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643467 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643468 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643469 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643470 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643471 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643472 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643473 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643474 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643475 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643477 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643478 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643479 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643480 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643481 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643482 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643483 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643484 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643485 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643486 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643487 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643488 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643489 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643490 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643491 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643492 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643493 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643494 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643495 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643496 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643497 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643498 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643499 2 0.0237 0.986 0.000 0.996 0.004
#> SRR1643500 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643501 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643502 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643503 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643504 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643505 2 0.0237 0.986 0.000 0.996 0.004
#> SRR1643506 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643507 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643508 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643509 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643510 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643511 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643512 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643513 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643531 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643532 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643533 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643534 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643535 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643536 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643537 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643538 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643539 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643540 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643541 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643542 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643543 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643544 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643514 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643515 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643516 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643517 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643518 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643519 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643520 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643521 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643522 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643523 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643524 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643525 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643526 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643527 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643528 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643529 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643530 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643545 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643546 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643547 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643548 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643549 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643550 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643551 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643552 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643553 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643554 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643555 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643556 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643558 2 0.0000 0.986 0.000 1.000 0.000
#> SRR1643559 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643560 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643561 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643562 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643563 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643564 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643565 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643566 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643567 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643568 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643569 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643570 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643571 2 0.1529 0.984 0.000 0.960 0.040
#> SRR1643572 2 0.1529 0.984 0.000 0.960 0.040
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643168 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643169 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643170 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643171 1 0.0188 0.818 0.996 0.000 0.004 0.000
#> SRR1643172 1 0.0336 0.814 0.992 0.000 0.008 0.000
#> SRR1643173 1 0.0336 0.814 0.992 0.000 0.008 0.000
#> SRR1643174 1 0.0336 0.814 0.992 0.000 0.008 0.000
#> SRR1643175 1 0.3612 0.809 0.856 0.000 0.044 0.100
#> SRR1643176 1 0.3877 0.799 0.840 0.000 0.048 0.112
#> SRR1643177 1 0.3931 0.794 0.832 0.000 0.040 0.128
#> SRR1643178 1 0.4307 0.788 0.808 0.000 0.048 0.144
#> SRR1643180 1 0.2589 0.682 0.884 0.000 0.116 0.000
#> SRR1643181 1 0.2647 0.675 0.880 0.000 0.120 0.000
#> SRR1643182 1 0.3219 0.590 0.836 0.000 0.164 0.000
#> SRR1643183 1 0.1637 0.763 0.940 0.000 0.060 0.000
#> SRR1643184 1 0.1637 0.763 0.940 0.000 0.060 0.000
#> SRR1643185 1 0.1716 0.758 0.936 0.000 0.064 0.000
#> SRR1643186 1 0.1792 0.753 0.932 0.000 0.068 0.000
#> SRR1643187 1 0.2704 0.828 0.876 0.000 0.000 0.124
#> SRR1643188 1 0.2589 0.830 0.884 0.000 0.000 0.116
#> SRR1643189 1 0.2530 0.831 0.888 0.000 0.000 0.112
#> SRR1643190 1 0.2589 0.830 0.884 0.000 0.000 0.116
#> SRR1643191 1 0.2149 0.726 0.912 0.000 0.088 0.000
#> SRR1643192 1 0.2081 0.732 0.916 0.000 0.084 0.000
#> SRR1643193 1 0.2530 0.831 0.888 0.000 0.000 0.112
#> SRR1643194 1 0.2281 0.832 0.904 0.000 0.000 0.096
#> SRR1643195 4 0.1610 0.961 0.032 0.000 0.016 0.952
#> SRR1643196 4 0.1510 0.965 0.028 0.000 0.016 0.956
#> SRR1643197 1 0.1833 0.819 0.944 0.000 0.024 0.032
#> SRR1643198 1 0.1706 0.824 0.948 0.000 0.016 0.036
#> SRR1643199 1 0.2081 0.735 0.916 0.000 0.084 0.000
#> SRR1643200 1 0.1940 0.745 0.924 0.000 0.076 0.000
#> SRR1643201 1 0.4831 0.702 0.704 0.000 0.016 0.280
#> SRR1643202 1 0.4831 0.702 0.704 0.000 0.016 0.280
#> SRR1643203 1 0.0707 0.826 0.980 0.000 0.000 0.020
#> SRR1643204 1 0.0817 0.827 0.976 0.000 0.000 0.024
#> SRR1643205 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643206 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643207 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643208 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643209 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643210 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643211 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643212 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643213 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643214 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643215 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643216 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643217 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643218 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643219 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643220 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643221 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643222 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643223 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643224 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643225 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643226 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643227 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643228 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643229 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643230 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643231 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643232 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643233 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643234 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643235 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643236 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643237 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643238 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643239 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643240 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643241 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643242 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643243 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643245 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643246 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643247 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643248 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643249 3 0.4331 1.000 0.288 0.000 0.712 0.000
#> SRR1643250 4 0.1059 0.980 0.016 0.000 0.012 0.972
#> SRR1643251 4 0.1059 0.980 0.016 0.000 0.012 0.972
#> SRR1643252 4 0.0937 0.982 0.012 0.000 0.012 0.976
#> SRR1643253 4 0.1059 0.980 0.016 0.000 0.012 0.972
#> SRR1643254 4 0.1059 0.980 0.016 0.000 0.012 0.972
#> SRR1643255 4 0.0937 0.982 0.012 0.000 0.012 0.976
#> SRR1643256 4 0.1174 0.977 0.020 0.000 0.012 0.968
#> SRR1643257 4 0.1174 0.977 0.020 0.000 0.012 0.968
#> SRR1643258 4 0.1284 0.973 0.024 0.000 0.012 0.964
#> SRR1643259 4 0.1059 0.980 0.016 0.000 0.012 0.972
#> SRR1643260 4 0.1059 0.980 0.016 0.000 0.012 0.972
#> SRR1643261 4 0.1042 0.977 0.020 0.000 0.008 0.972
#> SRR1643262 4 0.0672 0.985 0.008 0.000 0.008 0.984
#> SRR1643263 4 0.0336 0.984 0.008 0.000 0.000 0.992
#> SRR1643264 4 0.0672 0.985 0.008 0.000 0.008 0.984
#> SRR1643266 4 0.0336 0.984 0.008 0.000 0.000 0.992
#> SRR1643267 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643268 4 0.0524 0.985 0.008 0.000 0.004 0.988
#> SRR1643269 4 0.0336 0.984 0.008 0.000 0.000 0.992
#> SRR1643270 4 0.0336 0.984 0.008 0.000 0.000 0.992
#> SRR1643271 4 0.0524 0.985 0.008 0.000 0.004 0.988
#> SRR1643272 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643273 1 0.4690 0.719 0.724 0.000 0.016 0.260
#> SRR1643274 1 0.4831 0.702 0.704 0.000 0.016 0.280
#> SRR1643275 1 0.4690 0.719 0.724 0.000 0.016 0.260
#> SRR1643276 1 0.4804 0.706 0.708 0.000 0.016 0.276
#> SRR1643277 1 0.4720 0.716 0.720 0.000 0.016 0.264
#> SRR1643278 1 0.4776 0.709 0.712 0.000 0.016 0.272
#> SRR1643279 1 0.4831 0.702 0.704 0.000 0.016 0.280
#> SRR1643280 1 0.4804 0.706 0.708 0.000 0.016 0.276
#> SRR1643281 1 0.4831 0.702 0.704 0.000 0.016 0.280
#> SRR1643282 1 0.4831 0.702 0.704 0.000 0.016 0.280
#> SRR1643283 1 0.4776 0.709 0.712 0.000 0.016 0.272
#> SRR1643284 1 0.4804 0.706 0.708 0.000 0.016 0.276
#> SRR1643285 1 0.4804 0.706 0.708 0.000 0.016 0.276
#> SRR1643286 1 0.4776 0.709 0.712 0.000 0.016 0.272
#> SRR1643287 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643288 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643289 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643290 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643291 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643292 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643293 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643294 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643295 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643296 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643297 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643298 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643299 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643300 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643301 1 0.4933 0.685 0.688 0.000 0.016 0.296
#> SRR1643302 1 0.4857 0.698 0.700 0.000 0.016 0.284
#> SRR1643303 1 0.4883 0.694 0.696 0.000 0.016 0.288
#> SRR1643304 1 0.4908 0.690 0.692 0.000 0.016 0.292
#> SRR1643305 1 0.4831 0.702 0.704 0.000 0.016 0.280
#> SRR1643306 1 0.4883 0.694 0.696 0.000 0.016 0.288
#> SRR1643307 1 0.5398 0.479 0.580 0.000 0.016 0.404
#> SRR1643308 1 0.4857 0.698 0.700 0.000 0.016 0.284
#> SRR1643309 1 0.4957 0.679 0.684 0.000 0.016 0.300
#> SRR1643310 1 0.5003 0.666 0.676 0.000 0.016 0.308
#> SRR1643311 1 0.4831 0.702 0.704 0.000 0.016 0.280
#> SRR1643312 1 0.4831 0.702 0.704 0.000 0.016 0.280
#> SRR1643313 1 0.5488 0.353 0.532 0.000 0.016 0.452
#> SRR1643314 1 0.2281 0.832 0.904 0.000 0.000 0.096
#> SRR1643315 1 0.2589 0.830 0.884 0.000 0.000 0.116
#> SRR1643316 1 0.2760 0.826 0.872 0.000 0.000 0.128
#> SRR1643317 1 0.2704 0.828 0.876 0.000 0.000 0.124
#> SRR1643318 1 0.2944 0.824 0.868 0.000 0.004 0.128
#> SRR1643319 1 0.2814 0.824 0.868 0.000 0.000 0.132
#> SRR1643320 1 0.2760 0.826 0.872 0.000 0.000 0.128
#> SRR1643321 1 0.2704 0.828 0.876 0.000 0.000 0.124
#> SRR1643322 1 0.2888 0.827 0.872 0.000 0.004 0.124
#> SRR1643323 1 0.2589 0.830 0.884 0.000 0.000 0.116
#> SRR1643324 1 0.2868 0.821 0.864 0.000 0.000 0.136
#> SRR1643325 1 0.2589 0.830 0.884 0.000 0.000 0.116
#> SRR1643326 1 0.2760 0.827 0.872 0.000 0.000 0.128
#> SRR1643327 1 0.2647 0.829 0.880 0.000 0.000 0.120
#> SRR1643328 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643329 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643330 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643331 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643332 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643333 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643334 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643335 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643336 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643337 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643338 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643339 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643340 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643341 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643342 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643343 1 0.2647 0.829 0.880 0.000 0.000 0.120
#> SRR1643344 1 0.2530 0.831 0.888 0.000 0.000 0.112
#> SRR1643345 1 0.2589 0.831 0.884 0.000 0.000 0.116
#> SRR1643346 1 0.2647 0.830 0.880 0.000 0.000 0.120
#> SRR1643347 1 0.2530 0.831 0.888 0.000 0.000 0.112
#> SRR1643348 1 0.2469 0.832 0.892 0.000 0.000 0.108
#> SRR1643349 1 0.2704 0.828 0.876 0.000 0.000 0.124
#> SRR1643350 1 0.2530 0.831 0.888 0.000 0.000 0.112
#> SRR1643351 1 0.2647 0.829 0.880 0.000 0.000 0.120
#> SRR1643352 1 0.2704 0.828 0.876 0.000 0.000 0.124
#> SRR1643353 1 0.2704 0.828 0.876 0.000 0.000 0.124
#> SRR1643354 1 0.2704 0.828 0.876 0.000 0.000 0.124
#> SRR1643355 1 0.2760 0.826 0.872 0.000 0.000 0.128
#> SRR1643356 1 0.2530 0.831 0.888 0.000 0.000 0.112
#> SRR1643357 1 0.2589 0.831 0.884 0.000 0.000 0.116
#> SRR1643358 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643359 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643360 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643361 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643362 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643363 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643364 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643365 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643366 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643367 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643368 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643369 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643370 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643371 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643372 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643373 4 0.0657 0.984 0.004 0.000 0.012 0.984
#> SRR1643374 4 0.0657 0.984 0.004 0.000 0.012 0.984
#> SRR1643375 4 0.0657 0.984 0.004 0.000 0.012 0.984
#> SRR1643376 4 0.0657 0.984 0.004 0.000 0.012 0.984
#> SRR1643377 4 0.0657 0.984 0.004 0.000 0.012 0.984
#> SRR1643378 4 0.0657 0.984 0.004 0.000 0.012 0.984
#> SRR1643379 4 0.0657 0.984 0.004 0.000 0.012 0.984
#> SRR1643380 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643381 4 0.0657 0.984 0.004 0.000 0.012 0.984
#> SRR1643382 4 0.0657 0.984 0.004 0.000 0.012 0.984
#> SRR1643383 4 0.0657 0.984 0.004 0.000 0.012 0.984
#> SRR1643384 4 0.0657 0.984 0.004 0.000 0.012 0.984
#> SRR1643385 4 0.0657 0.984 0.004 0.000 0.012 0.984
#> SRR1643386 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643387 4 0.0657 0.984 0.004 0.000 0.012 0.984
#> SRR1643388 4 0.0804 0.984 0.008 0.000 0.012 0.980
#> SRR1643389 4 0.0657 0.984 0.004 0.000 0.012 0.984
#> SRR1643390 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643391 1 0.0188 0.823 0.996 0.000 0.000 0.004
#> SRR1643392 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643393 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643394 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643395 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643396 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643397 1 0.0188 0.823 0.996 0.000 0.000 0.004
#> SRR1643398 1 0.0188 0.823 0.996 0.000 0.000 0.004
#> SRR1643399 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643400 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643401 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643402 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643403 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643404 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643405 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643406 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643407 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643408 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643409 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643410 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643411 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643412 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643413 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643414 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643415 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643416 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643417 1 0.0000 0.822 1.000 0.000 0.000 0.000
#> SRR1643418 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643419 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643420 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643421 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643422 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643423 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643424 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643425 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643426 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643427 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643428 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643429 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643430 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643431 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643432 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643433 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643434 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643435 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643436 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643437 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643438 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643439 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643440 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643441 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643442 4 0.0592 0.983 0.000 0.000 0.016 0.984
#> SRR1643443 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643444 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643445 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643446 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643447 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643448 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643449 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643450 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643451 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643452 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643453 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643454 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643455 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643456 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643457 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643458 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643459 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643460 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643461 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643462 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643463 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643464 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643466 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643467 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643468 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643469 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643470 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643471 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643472 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643473 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643474 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643475 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643477 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643478 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643479 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643480 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643481 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643482 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643483 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643484 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643485 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643486 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643487 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643488 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643489 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643490 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643491 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643492 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643493 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643494 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643495 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643496 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643497 2 0.0592 0.907 0.000 0.984 0.016 0.000
#> SRR1643498 2 0.0592 0.907 0.000 0.984 0.016 0.000
#> SRR1643499 2 0.0592 0.907 0.000 0.984 0.016 0.000
#> SRR1643500 2 0.0707 0.907 0.000 0.980 0.020 0.000
#> SRR1643501 2 0.0707 0.907 0.000 0.980 0.020 0.000
#> SRR1643502 2 0.0592 0.908 0.000 0.984 0.016 0.000
#> SRR1643503 2 0.0336 0.907 0.000 0.992 0.008 0.000
#> SRR1643504 2 0.0469 0.907 0.000 0.988 0.012 0.000
#> SRR1643505 2 0.0592 0.907 0.000 0.984 0.016 0.000
#> SRR1643506 2 0.0817 0.907 0.000 0.976 0.024 0.000
#> SRR1643507 2 0.0921 0.907 0.000 0.972 0.028 0.000
#> SRR1643508 2 0.0592 0.907 0.000 0.984 0.016 0.000
#> SRR1643509 2 0.0707 0.907 0.000 0.980 0.020 0.000
#> SRR1643510 2 0.0817 0.907 0.000 0.976 0.024 0.000
#> SRR1643511 2 0.0921 0.907 0.000 0.972 0.028 0.000
#> SRR1643512 2 0.0592 0.907 0.000 0.984 0.016 0.000
#> SRR1643513 2 0.0921 0.907 0.000 0.972 0.028 0.000
#> SRR1643531 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643532 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643533 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643534 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643535 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643536 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643537 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643538 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643539 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643540 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643541 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643542 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643543 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643544 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643514 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643515 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643516 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643517 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643518 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643519 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643520 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643521 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643522 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643523 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643524 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643525 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643526 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643527 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643528 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643529 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643530 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643545 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643546 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643547 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643548 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643549 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643550 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643551 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643552 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643553 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643554 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643555 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643556 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643558 2 0.0000 0.906 0.000 1.000 0.000 0.000
#> SRR1643559 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643560 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643561 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643562 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643563 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643564 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643565 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643566 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643567 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643568 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643569 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643570 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643571 2 0.3837 0.892 0.000 0.776 0.224 0.000
#> SRR1643572 2 0.3837 0.892 0.000 0.776 0.224 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 1 0.1484 0.855 0.944 0.000 0.008 0.000 0.048
#> SRR1643168 1 0.1484 0.855 0.944 0.000 0.008 0.000 0.048
#> SRR1643169 1 0.1484 0.855 0.944 0.000 0.008 0.000 0.048
#> SRR1643170 1 0.1597 0.854 0.940 0.000 0.012 0.000 0.048
#> SRR1643171 1 0.1408 0.855 0.948 0.000 0.008 0.000 0.044
#> SRR1643172 1 0.1408 0.855 0.948 0.000 0.008 0.000 0.044
#> SRR1643173 1 0.1408 0.855 0.948 0.000 0.008 0.000 0.044
#> SRR1643174 1 0.1408 0.855 0.948 0.000 0.008 0.000 0.044
#> SRR1643175 1 0.4740 0.773 0.760 0.000 0.016 0.128 0.096
#> SRR1643176 1 0.4784 0.769 0.756 0.000 0.016 0.132 0.096
#> SRR1643177 1 0.4455 0.775 0.776 0.000 0.012 0.136 0.076
#> SRR1643178 1 0.4869 0.760 0.748 0.000 0.016 0.140 0.096
#> SRR1643180 1 0.3736 0.762 0.808 0.000 0.140 0.000 0.052
#> SRR1643181 1 0.3736 0.763 0.808 0.000 0.140 0.000 0.052
#> SRR1643182 1 0.3944 0.739 0.788 0.000 0.160 0.000 0.052
#> SRR1643183 1 0.3307 0.797 0.844 0.000 0.104 0.000 0.052
#> SRR1643184 1 0.3307 0.797 0.844 0.000 0.104 0.000 0.052
#> SRR1643185 1 0.3359 0.794 0.840 0.000 0.108 0.000 0.052
#> SRR1643186 1 0.3201 0.803 0.852 0.000 0.096 0.000 0.052
#> SRR1643187 1 0.1591 0.864 0.940 0.000 0.004 0.004 0.052
#> SRR1643188 1 0.1430 0.864 0.944 0.000 0.004 0.000 0.052
#> SRR1643189 1 0.1430 0.864 0.944 0.000 0.004 0.000 0.052
#> SRR1643190 1 0.1430 0.864 0.944 0.000 0.004 0.000 0.052
#> SRR1643191 1 0.2867 0.822 0.880 0.000 0.072 0.004 0.044
#> SRR1643192 1 0.2929 0.819 0.876 0.000 0.076 0.004 0.044
#> SRR1643193 1 0.1357 0.856 0.948 0.000 0.004 0.000 0.048
#> SRR1643194 1 0.1357 0.856 0.948 0.000 0.004 0.000 0.048
#> SRR1643195 4 0.4643 0.824 0.072 0.000 0.012 0.756 0.160
#> SRR1643196 4 0.4421 0.838 0.060 0.000 0.012 0.772 0.156
#> SRR1643197 1 0.2305 0.848 0.916 0.000 0.012 0.028 0.044
#> SRR1643198 1 0.2217 0.850 0.920 0.000 0.012 0.024 0.044
#> SRR1643199 1 0.3297 0.812 0.860 0.000 0.080 0.012 0.048
#> SRR1643200 1 0.3229 0.809 0.860 0.000 0.088 0.008 0.044
#> SRR1643201 1 0.3576 0.818 0.840 0.000 0.012 0.048 0.100
#> SRR1643202 1 0.3628 0.817 0.836 0.000 0.012 0.048 0.104
#> SRR1643203 1 0.1124 0.860 0.960 0.000 0.004 0.000 0.036
#> SRR1643204 1 0.1124 0.860 0.960 0.000 0.004 0.000 0.036
#> SRR1643205 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643206 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643207 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643208 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643209 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643210 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643211 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643212 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643213 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643214 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643215 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643216 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643217 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643218 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643219 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643220 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643221 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643222 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643223 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643224 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643225 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643226 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643227 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643228 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643229 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643230 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643231 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643232 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643233 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643234 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643235 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643236 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643237 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643238 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643239 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643240 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643241 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643242 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643243 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643245 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643246 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643247 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643248 3 0.0794 1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643249 3 0.0955 0.995 0.028 0.000 0.968 0.004 0.000
#> SRR1643250 4 0.1845 0.879 0.016 0.000 0.000 0.928 0.056
#> SRR1643251 4 0.1845 0.879 0.016 0.000 0.000 0.928 0.056
#> SRR1643252 4 0.1914 0.880 0.016 0.000 0.000 0.924 0.060
#> SRR1643253 4 0.1845 0.879 0.016 0.000 0.000 0.928 0.056
#> SRR1643254 4 0.1845 0.879 0.016 0.000 0.000 0.928 0.056
#> SRR1643255 4 0.1845 0.879 0.016 0.000 0.000 0.928 0.056
#> SRR1643256 4 0.2036 0.875 0.024 0.000 0.000 0.920 0.056
#> SRR1643257 4 0.2012 0.875 0.020 0.000 0.000 0.920 0.060
#> SRR1643258 4 0.2193 0.869 0.028 0.000 0.000 0.912 0.060
#> SRR1643259 4 0.1845 0.879 0.016 0.000 0.000 0.928 0.056
#> SRR1643260 4 0.1845 0.879 0.016 0.000 0.000 0.928 0.056
#> SRR1643261 4 0.2036 0.875 0.024 0.000 0.000 0.920 0.056
#> SRR1643262 4 0.0404 0.902 0.000 0.000 0.000 0.988 0.012
#> SRR1643263 4 0.0510 0.902 0.000 0.000 0.000 0.984 0.016
#> SRR1643264 4 0.0404 0.901 0.000 0.000 0.000 0.988 0.012
#> SRR1643266 4 0.0451 0.902 0.000 0.000 0.004 0.988 0.008
#> SRR1643267 4 0.0290 0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643268 4 0.0404 0.902 0.000 0.000 0.000 0.988 0.012
#> SRR1643269 4 0.0404 0.902 0.000 0.000 0.000 0.988 0.012
#> SRR1643270 4 0.0693 0.902 0.000 0.000 0.008 0.980 0.012
#> SRR1643271 4 0.0404 0.902 0.000 0.000 0.000 0.988 0.012
#> SRR1643272 4 0.0162 0.901 0.000 0.000 0.000 0.996 0.004
#> SRR1643273 1 0.4779 0.760 0.672 0.000 0.012 0.024 0.292
#> SRR1643274 1 0.4858 0.750 0.656 0.000 0.012 0.024 0.308
#> SRR1643275 1 0.4912 0.741 0.644 0.000 0.012 0.024 0.320
#> SRR1643276 1 0.5026 0.732 0.632 0.000 0.012 0.028 0.328
#> SRR1643277 1 0.4839 0.751 0.660 0.000 0.012 0.024 0.304
#> SRR1643278 1 0.4439 0.795 0.728 0.000 0.012 0.024 0.236
#> SRR1643279 1 0.4975 0.741 0.644 0.000 0.012 0.028 0.316
#> SRR1643280 1 0.4735 0.756 0.668 0.000 0.012 0.020 0.300
#> SRR1643281 1 0.5009 0.735 0.636 0.000 0.012 0.028 0.324
#> SRR1643282 1 0.4800 0.758 0.668 0.000 0.012 0.024 0.296
#> SRR1643283 1 0.4912 0.741 0.644 0.000 0.012 0.024 0.320
#> SRR1643284 1 0.4820 0.754 0.664 0.000 0.012 0.024 0.300
#> SRR1643285 1 0.4839 0.751 0.660 0.000 0.012 0.024 0.304
#> SRR1643286 1 0.4820 0.756 0.664 0.000 0.012 0.024 0.300
#> SRR1643287 4 0.4714 0.663 0.004 0.000 0.012 0.576 0.408
#> SRR1643288 4 0.4714 0.663 0.004 0.000 0.012 0.576 0.408
#> SRR1643289 4 0.4714 0.663 0.004 0.000 0.012 0.576 0.408
#> SRR1643290 4 0.4686 0.673 0.004 0.000 0.012 0.588 0.396
#> SRR1643291 4 0.4714 0.663 0.004 0.000 0.012 0.576 0.408
#> SRR1643292 4 0.4722 0.658 0.004 0.000 0.012 0.572 0.412
#> SRR1643293 4 0.4722 0.658 0.004 0.000 0.012 0.572 0.412
#> SRR1643294 4 0.4714 0.663 0.004 0.000 0.012 0.576 0.408
#> SRR1643295 4 0.4722 0.658 0.004 0.000 0.012 0.572 0.412
#> SRR1643296 4 0.4714 0.663 0.004 0.000 0.012 0.576 0.408
#> SRR1643297 4 0.4686 0.674 0.004 0.000 0.012 0.588 0.396
#> SRR1643298 4 0.4705 0.667 0.004 0.000 0.012 0.580 0.404
#> SRR1643299 4 0.4686 0.673 0.004 0.000 0.012 0.588 0.396
#> SRR1643300 4 0.4705 0.667 0.004 0.000 0.012 0.580 0.404
#> SRR1643301 1 0.3862 0.810 0.824 0.000 0.012 0.092 0.072
#> SRR1643302 1 0.3256 0.831 0.864 0.000 0.012 0.064 0.060
#> SRR1643303 1 0.3694 0.815 0.836 0.000 0.012 0.076 0.076
#> SRR1643304 1 0.4093 0.793 0.808 0.000 0.012 0.088 0.092
#> SRR1643305 1 0.2886 0.839 0.884 0.000 0.012 0.036 0.068
#> SRR1643306 1 0.3316 0.827 0.860 0.000 0.012 0.072 0.056
#> SRR1643307 1 0.6092 0.391 0.564 0.000 0.012 0.316 0.108
#> SRR1643308 1 0.2987 0.838 0.880 0.000 0.012 0.056 0.052
#> SRR1643309 1 0.4046 0.794 0.808 0.000 0.012 0.116 0.064
#> SRR1643310 1 0.4512 0.760 0.772 0.000 0.012 0.136 0.080
#> SRR1643311 1 0.3862 0.806 0.824 0.000 0.012 0.072 0.092
#> SRR1643312 1 0.3103 0.834 0.872 0.000 0.012 0.044 0.072
#> SRR1643313 1 0.6117 0.276 0.524 0.000 0.012 0.368 0.096
#> SRR1643314 1 0.0727 0.864 0.980 0.000 0.004 0.004 0.012
#> SRR1643315 1 0.1041 0.860 0.964 0.000 0.000 0.004 0.032
#> SRR1643316 1 0.1041 0.860 0.964 0.000 0.000 0.004 0.032
#> SRR1643317 1 0.0932 0.863 0.972 0.000 0.004 0.004 0.020
#> SRR1643318 1 0.0955 0.861 0.968 0.000 0.000 0.004 0.028
#> SRR1643319 1 0.0671 0.863 0.980 0.000 0.000 0.004 0.016
#> SRR1643320 1 0.0771 0.863 0.976 0.000 0.000 0.004 0.020
#> SRR1643321 1 0.0771 0.863 0.976 0.000 0.000 0.004 0.020
#> SRR1643322 1 0.0451 0.864 0.988 0.000 0.000 0.004 0.008
#> SRR1643323 1 0.0955 0.862 0.968 0.000 0.000 0.004 0.028
#> SRR1643324 1 0.1026 0.862 0.968 0.000 0.004 0.004 0.024
#> SRR1643325 1 0.0671 0.863 0.980 0.000 0.000 0.004 0.016
#> SRR1643326 1 0.0510 0.863 0.984 0.000 0.000 0.000 0.016
#> SRR1643327 1 0.0955 0.861 0.968 0.000 0.000 0.004 0.028
#> SRR1643328 1 0.0324 0.863 0.992 0.000 0.004 0.000 0.004
#> SRR1643329 1 0.0324 0.863 0.992 0.000 0.004 0.000 0.004
#> SRR1643330 1 0.0162 0.863 0.996 0.000 0.004 0.000 0.000
#> SRR1643331 1 0.0162 0.863 0.996 0.000 0.004 0.000 0.000
#> SRR1643332 1 0.0324 0.863 0.992 0.000 0.004 0.000 0.004
#> SRR1643333 1 0.0162 0.863 0.996 0.000 0.004 0.000 0.000
#> SRR1643334 1 0.0324 0.863 0.992 0.000 0.004 0.000 0.004
#> SRR1643335 1 0.0324 0.863 0.992 0.000 0.004 0.000 0.004
#> SRR1643336 1 0.0162 0.863 0.996 0.000 0.004 0.000 0.000
#> SRR1643337 1 0.0324 0.863 0.992 0.000 0.004 0.000 0.004
#> SRR1643338 1 0.0324 0.863 0.992 0.000 0.004 0.000 0.004
#> SRR1643339 1 0.0324 0.863 0.992 0.000 0.004 0.000 0.004
#> SRR1643340 1 0.0162 0.863 0.996 0.000 0.004 0.000 0.000
#> SRR1643341 1 0.0324 0.863 0.992 0.000 0.004 0.000 0.004
#> SRR1643342 1 0.0162 0.863 0.996 0.000 0.004 0.000 0.000
#> SRR1643343 1 0.4135 0.738 0.656 0.000 0.004 0.000 0.340
#> SRR1643344 1 0.4135 0.738 0.656 0.000 0.004 0.000 0.340
#> SRR1643345 1 0.4151 0.735 0.652 0.000 0.004 0.000 0.344
#> SRR1643346 1 0.4252 0.737 0.652 0.000 0.008 0.000 0.340
#> SRR1643347 1 0.4151 0.735 0.652 0.000 0.004 0.000 0.344
#> SRR1643348 1 0.4302 0.733 0.648 0.000 0.004 0.004 0.344
#> SRR1643349 1 0.4135 0.738 0.656 0.000 0.004 0.000 0.340
#> SRR1643350 1 0.4135 0.738 0.656 0.000 0.004 0.000 0.340
#> SRR1643351 1 0.4135 0.738 0.656 0.000 0.004 0.000 0.340
#> SRR1643352 1 0.4151 0.735 0.652 0.000 0.004 0.000 0.344
#> SRR1643353 1 0.4151 0.735 0.652 0.000 0.004 0.000 0.344
#> SRR1643354 1 0.4135 0.738 0.656 0.000 0.004 0.000 0.340
#> SRR1643355 1 0.4151 0.735 0.652 0.000 0.004 0.000 0.344
#> SRR1643356 1 0.4151 0.735 0.652 0.000 0.004 0.000 0.344
#> SRR1643357 1 0.4151 0.735 0.652 0.000 0.004 0.000 0.344
#> SRR1643358 4 0.0794 0.897 0.000 0.000 0.000 0.972 0.028
#> SRR1643359 4 0.0794 0.897 0.000 0.000 0.000 0.972 0.028
#> SRR1643360 4 0.0794 0.897 0.000 0.000 0.000 0.972 0.028
#> SRR1643361 4 0.0609 0.899 0.000 0.000 0.000 0.980 0.020
#> SRR1643362 4 0.0963 0.894 0.000 0.000 0.000 0.964 0.036
#> SRR1643363 4 0.0609 0.899 0.000 0.000 0.000 0.980 0.020
#> SRR1643364 4 0.0609 0.899 0.000 0.000 0.000 0.980 0.020
#> SRR1643365 4 0.0794 0.897 0.000 0.000 0.000 0.972 0.028
#> SRR1643366 4 0.0609 0.899 0.000 0.000 0.000 0.980 0.020
#> SRR1643367 4 0.0510 0.900 0.000 0.000 0.000 0.984 0.016
#> SRR1643368 4 0.0703 0.898 0.000 0.000 0.000 0.976 0.024
#> SRR1643369 4 0.0703 0.898 0.000 0.000 0.000 0.976 0.024
#> SRR1643370 4 0.0703 0.898 0.000 0.000 0.000 0.976 0.024
#> SRR1643371 4 0.0703 0.898 0.000 0.000 0.000 0.976 0.024
#> SRR1643372 4 0.0510 0.900 0.000 0.000 0.000 0.984 0.016
#> SRR1643373 4 0.0290 0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643374 4 0.0290 0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643375 4 0.0290 0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643376 4 0.0290 0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643377 4 0.0290 0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643378 4 0.0290 0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643379 4 0.0290 0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643380 4 0.0290 0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643381 4 0.0290 0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643382 4 0.0290 0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643383 4 0.0290 0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643384 4 0.0290 0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643385 4 0.0290 0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643386 4 0.0290 0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643387 4 0.0290 0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643388 4 0.0290 0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643389 4 0.0290 0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643390 1 0.1357 0.863 0.948 0.000 0.004 0.000 0.048
#> SRR1643391 1 0.1205 0.863 0.956 0.000 0.004 0.000 0.040
#> SRR1643392 1 0.1357 0.863 0.948 0.000 0.004 0.000 0.048
#> SRR1643393 1 0.1282 0.863 0.952 0.000 0.004 0.000 0.044
#> SRR1643394 1 0.1282 0.863 0.952 0.000 0.004 0.000 0.044
#> SRR1643395 1 0.1205 0.863 0.956 0.000 0.004 0.000 0.040
#> SRR1643396 1 0.1357 0.863 0.948 0.000 0.004 0.000 0.048
#> SRR1643397 1 0.1205 0.863 0.956 0.000 0.004 0.000 0.040
#> SRR1643398 1 0.1205 0.863 0.956 0.000 0.004 0.000 0.040
#> SRR1643399 1 0.1357 0.863 0.948 0.000 0.004 0.000 0.048
#> SRR1643400 1 0.1282 0.863 0.952 0.000 0.004 0.000 0.044
#> SRR1643401 1 0.1357 0.863 0.948 0.000 0.004 0.000 0.048
#> SRR1643402 1 0.1357 0.863 0.948 0.000 0.004 0.000 0.048
#> SRR1643403 1 0.1357 0.863 0.948 0.000 0.004 0.000 0.048
#> SRR1643404 1 0.1357 0.863 0.948 0.000 0.004 0.000 0.048
#> SRR1643405 1 0.3123 0.825 0.812 0.000 0.004 0.000 0.184
#> SRR1643406 1 0.3010 0.830 0.824 0.000 0.004 0.000 0.172
#> SRR1643407 1 0.3048 0.828 0.820 0.000 0.004 0.000 0.176
#> SRR1643408 1 0.3086 0.827 0.816 0.000 0.004 0.000 0.180
#> SRR1643409 1 0.3231 0.820 0.800 0.000 0.004 0.000 0.196
#> SRR1643410 1 0.3086 0.827 0.816 0.000 0.004 0.000 0.180
#> SRR1643411 1 0.3086 0.827 0.816 0.000 0.004 0.000 0.180
#> SRR1643412 1 0.3231 0.820 0.800 0.000 0.004 0.000 0.196
#> SRR1643413 1 0.2890 0.834 0.836 0.000 0.004 0.000 0.160
#> SRR1643414 1 0.3123 0.825 0.812 0.000 0.004 0.000 0.184
#> SRR1643415 1 0.3123 0.825 0.812 0.000 0.004 0.000 0.184
#> SRR1643416 1 0.2930 0.833 0.832 0.000 0.004 0.000 0.164
#> SRR1643417 1 0.3196 0.821 0.804 0.000 0.004 0.000 0.192
#> SRR1643418 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643419 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643420 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643421 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643422 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643423 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643424 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643425 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643426 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643427 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643428 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643429 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643430 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643431 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643432 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643433 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643434 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643435 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643436 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643437 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643438 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643439 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643440 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643441 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643442 4 0.2575 0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643443 2 0.4321 0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643444 2 0.4321 0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643445 2 0.4321 0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643446 2 0.4321 0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643447 2 0.4321 0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643448 2 0.4321 0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643449 2 0.4321 0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643450 2 0.4321 0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643451 2 0.4321 0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643452 2 0.4321 0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643453 2 0.4321 0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643454 2 0.4321 0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643455 2 0.4321 0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643456 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643457 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643458 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643459 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643460 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643461 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643462 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643463 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643464 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643466 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643467 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643468 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643469 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643470 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643471 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643472 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643473 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643474 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643475 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643477 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643478 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643479 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643480 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643481 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643482 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643483 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643484 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643485 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643486 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643487 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643488 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643489 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643490 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643491 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643492 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643493 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643494 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643495 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643496 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643497 2 0.0671 0.825 0.000 0.980 0.004 0.000 0.016
#> SRR1643498 2 0.0566 0.824 0.000 0.984 0.004 0.000 0.012
#> SRR1643499 2 0.0671 0.825 0.000 0.980 0.004 0.000 0.016
#> SRR1643500 2 0.0566 0.824 0.000 0.984 0.004 0.000 0.012
#> SRR1643501 2 0.0671 0.825 0.000 0.980 0.004 0.000 0.016
#> SRR1643502 2 0.0671 0.825 0.000 0.980 0.004 0.000 0.016
#> SRR1643503 2 0.0566 0.824 0.000 0.984 0.004 0.000 0.012
#> SRR1643504 2 0.0566 0.824 0.000 0.984 0.004 0.000 0.012
#> SRR1643505 2 0.0771 0.825 0.000 0.976 0.004 0.000 0.020
#> SRR1643506 2 0.0566 0.824 0.000 0.984 0.004 0.000 0.012
#> SRR1643507 2 0.0671 0.825 0.000 0.980 0.004 0.000 0.016
#> SRR1643508 2 0.0566 0.824 0.000 0.984 0.004 0.000 0.012
#> SRR1643509 2 0.0566 0.824 0.000 0.984 0.004 0.000 0.012
#> SRR1643510 2 0.0771 0.824 0.000 0.976 0.004 0.000 0.020
#> SRR1643511 2 0.0865 0.824 0.000 0.972 0.004 0.000 0.024
#> SRR1643512 2 0.0566 0.824 0.000 0.984 0.004 0.000 0.012
#> SRR1643513 2 0.0865 0.824 0.000 0.972 0.004 0.000 0.024
#> SRR1643531 2 0.4182 0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643532 2 0.4182 0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643533 2 0.4182 0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643534 2 0.4182 0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643535 2 0.4182 0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643536 2 0.4182 0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643537 2 0.4182 0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643538 2 0.4182 0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643539 2 0.4182 0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643540 2 0.4182 0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643541 2 0.4182 0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643542 2 0.4182 0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643543 2 0.4182 0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643544 2 0.4182 0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643514 2 0.4150 0.789 0.000 0.612 0.000 0.000 0.388
#> SRR1643515 2 0.4138 0.790 0.000 0.616 0.000 0.000 0.384
#> SRR1643516 2 0.4161 0.788 0.000 0.608 0.000 0.000 0.392
#> SRR1643517 2 0.4161 0.788 0.000 0.608 0.000 0.000 0.392
#> SRR1643518 2 0.4161 0.788 0.000 0.608 0.000 0.000 0.392
#> SRR1643519 2 0.4161 0.788 0.000 0.608 0.000 0.000 0.392
#> SRR1643520 2 0.4138 0.790 0.000 0.616 0.000 0.000 0.384
#> SRR1643521 2 0.4150 0.789 0.000 0.612 0.000 0.000 0.388
#> SRR1643522 2 0.4150 0.789 0.000 0.612 0.000 0.000 0.388
#> SRR1643523 2 0.4138 0.790 0.000 0.616 0.000 0.000 0.384
#> SRR1643524 2 0.4161 0.788 0.000 0.608 0.000 0.000 0.392
#> SRR1643525 2 0.4161 0.788 0.000 0.608 0.000 0.000 0.392
#> SRR1643526 2 0.4138 0.790 0.000 0.616 0.000 0.000 0.384
#> SRR1643527 2 0.4138 0.790 0.000 0.616 0.000 0.000 0.384
#> SRR1643528 2 0.4126 0.790 0.000 0.620 0.000 0.000 0.380
#> SRR1643529 2 0.4161 0.788 0.000 0.608 0.000 0.000 0.392
#> SRR1643530 2 0.4138 0.790 0.000 0.616 0.000 0.000 0.384
#> SRR1643545 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643546 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643547 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643548 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643549 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643550 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643551 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643552 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643553 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643554 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643555 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643556 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643558 2 0.0000 0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643559 2 0.4171 0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643560 2 0.4171 0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643561 2 0.4171 0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643562 2 0.4171 0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643563 2 0.4171 0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643564 2 0.4171 0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643565 2 0.4171 0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643566 2 0.4171 0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643567 2 0.4171 0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643568 2 0.4171 0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643569 2 0.4171 0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643570 2 0.4171 0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643571 2 0.4171 0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643572 2 0.4171 0.787 0.000 0.604 0.000 0.000 0.396
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 1 0.2854 0.73469 0.872 0.000 0.000 0.024 0.068 0.036
#> SRR1643168 1 0.2933 0.73245 0.868 0.000 0.000 0.028 0.068 0.036
#> SRR1643169 1 0.2854 0.73469 0.872 0.000 0.000 0.024 0.068 0.036
#> SRR1643170 1 0.2854 0.73469 0.872 0.000 0.000 0.024 0.068 0.036
#> SRR1643171 1 0.2919 0.73631 0.876 0.000 0.008 0.024 0.060 0.032
#> SRR1643172 1 0.2919 0.73631 0.876 0.000 0.008 0.024 0.060 0.032
#> SRR1643173 1 0.2919 0.73631 0.876 0.000 0.008 0.024 0.060 0.032
#> SRR1643174 1 0.2919 0.73631 0.876 0.000 0.008 0.024 0.060 0.032
#> SRR1643175 1 0.6117 0.26967 0.528 0.000 0.008 0.324 0.104 0.036
#> SRR1643176 1 0.6117 0.27146 0.528 0.000 0.008 0.324 0.104 0.036
#> SRR1643177 1 0.6043 0.28310 0.536 0.000 0.008 0.324 0.096 0.036
#> SRR1643178 1 0.6188 0.25571 0.520 0.000 0.008 0.324 0.112 0.036
#> SRR1643180 1 0.4570 0.66411 0.776 0.000 0.092 0.028 0.068 0.036
#> SRR1643181 1 0.4617 0.66019 0.772 0.000 0.096 0.028 0.068 0.036
#> SRR1643182 1 0.4838 0.63542 0.752 0.000 0.116 0.028 0.068 0.036
#> SRR1643183 1 0.4160 0.69776 0.808 0.000 0.056 0.028 0.068 0.040
#> SRR1643184 1 0.4219 0.69442 0.804 0.000 0.060 0.028 0.068 0.040
#> SRR1643185 1 0.4276 0.69071 0.800 0.000 0.064 0.028 0.068 0.040
#> SRR1643186 1 0.4037 0.70447 0.816 0.000 0.048 0.028 0.068 0.040
#> SRR1643187 1 0.2701 0.71664 0.864 0.000 0.000 0.004 0.104 0.028
#> SRR1643188 1 0.2793 0.71003 0.856 0.000 0.000 0.004 0.112 0.028
#> SRR1643189 1 0.2653 0.72028 0.868 0.000 0.000 0.004 0.100 0.028
#> SRR1643190 1 0.2882 0.70278 0.848 0.000 0.000 0.004 0.120 0.028
#> SRR1643191 1 0.3494 0.72451 0.848 0.000 0.028 0.028 0.064 0.032
#> SRR1643192 1 0.3494 0.72451 0.848 0.000 0.028 0.028 0.064 0.032
#> SRR1643193 1 0.3251 0.72205 0.844 0.000 0.000 0.028 0.092 0.036
#> SRR1643194 1 0.3201 0.72400 0.848 0.000 0.000 0.028 0.088 0.036
#> SRR1643195 4 0.6666 0.59418 0.124 0.000 0.000 0.528 0.216 0.132
#> SRR1643196 4 0.6560 0.61085 0.120 0.000 0.000 0.544 0.208 0.128
#> SRR1643197 1 0.3034 0.72944 0.864 0.000 0.000 0.056 0.048 0.032
#> SRR1643198 1 0.2908 0.73365 0.872 0.000 0.000 0.048 0.048 0.032
#> SRR1643199 1 0.4239 0.69341 0.804 0.000 0.060 0.036 0.064 0.036
#> SRR1643200 1 0.4239 0.69341 0.804 0.000 0.060 0.036 0.064 0.036
#> SRR1643201 1 0.4393 0.63635 0.748 0.000 0.000 0.052 0.164 0.036
#> SRR1643202 1 0.4332 0.64186 0.752 0.000 0.000 0.048 0.164 0.036
#> SRR1643203 1 0.2188 0.74941 0.912 0.000 0.000 0.020 0.036 0.032
#> SRR1643204 1 0.2100 0.75070 0.916 0.000 0.000 0.016 0.036 0.032
#> SRR1643205 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643206 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643207 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643208 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643209 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643210 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643211 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643212 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643213 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643214 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643215 3 0.0508 0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643216 3 0.0508 0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643217 3 0.0508 0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643218 3 0.0508 0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643219 3 0.0508 0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643220 3 0.0508 0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643221 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643222 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643223 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643224 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643225 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643226 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643227 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643228 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643229 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643230 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643231 3 0.0508 0.99601 0.012 0.000 0.984 0.000 0.000 0.004
#> SRR1643232 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643233 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643234 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643235 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643236 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643237 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643238 3 0.0508 0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643239 3 0.0508 0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643240 3 0.0508 0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643241 3 0.0508 0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643242 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643243 3 0.0508 0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643245 3 0.0508 0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643246 3 0.0508 0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643247 3 0.0508 0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643248 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643249 3 0.0363 0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643250 4 0.3722 0.75203 0.068 0.000 0.000 0.816 0.084 0.032
#> SRR1643251 4 0.3929 0.75741 0.076 0.000 0.000 0.800 0.092 0.032
#> SRR1643252 4 0.4144 0.75815 0.072 0.000 0.000 0.788 0.092 0.048
#> SRR1643253 4 0.3830 0.74858 0.076 0.000 0.000 0.808 0.084 0.032
#> SRR1643254 4 0.3777 0.75185 0.072 0.000 0.000 0.812 0.084 0.032
#> SRR1643255 4 0.3779 0.76629 0.060 0.000 0.000 0.812 0.092 0.036
#> SRR1643256 4 0.4247 0.72805 0.096 0.000 0.000 0.776 0.092 0.036
#> SRR1643257 4 0.4081 0.73340 0.088 0.000 0.000 0.788 0.092 0.032
#> SRR1643258 4 0.3883 0.74475 0.080 0.000 0.000 0.804 0.084 0.032
#> SRR1643259 4 0.3981 0.74250 0.080 0.000 0.000 0.796 0.092 0.032
#> SRR1643260 4 0.3772 0.76624 0.068 0.000 0.000 0.812 0.088 0.032
#> SRR1643261 4 0.4129 0.73050 0.096 0.000 0.000 0.784 0.088 0.032
#> SRR1643262 4 0.1500 0.82933 0.000 0.000 0.000 0.936 0.052 0.012
#> SRR1643263 4 0.1511 0.83018 0.004 0.000 0.000 0.940 0.044 0.012
#> SRR1643264 4 0.1693 0.83002 0.004 0.000 0.000 0.932 0.044 0.020
#> SRR1643266 4 0.1477 0.83149 0.004 0.000 0.000 0.940 0.048 0.008
#> SRR1643267 4 0.1340 0.82936 0.004 0.000 0.000 0.948 0.040 0.008
#> SRR1643268 4 0.1536 0.82976 0.004 0.000 0.000 0.940 0.040 0.016
#> SRR1643269 4 0.1765 0.82858 0.000 0.000 0.000 0.924 0.052 0.024
#> SRR1643270 4 0.1738 0.82829 0.004 0.000 0.000 0.928 0.052 0.016
#> SRR1643271 4 0.1889 0.82856 0.004 0.000 0.000 0.920 0.056 0.020
#> SRR1643272 4 0.1340 0.82936 0.004 0.000 0.000 0.948 0.040 0.008
#> SRR1643273 1 0.4127 -0.25070 0.508 0.000 0.000 0.004 0.484 0.004
#> SRR1643274 5 0.4129 0.26244 0.496 0.000 0.000 0.004 0.496 0.004
#> SRR1643275 5 0.4122 0.32227 0.472 0.000 0.000 0.004 0.520 0.004
#> SRR1643276 5 0.4098 0.37068 0.444 0.000 0.000 0.004 0.548 0.004
#> SRR1643277 5 0.3999 0.27209 0.496 0.000 0.000 0.000 0.500 0.004
#> SRR1643278 1 0.4109 0.11157 0.596 0.000 0.000 0.004 0.392 0.008
#> SRR1643279 5 0.4095 0.29880 0.480 0.000 0.000 0.000 0.512 0.008
#> SRR1643280 5 0.3999 0.26816 0.496 0.000 0.000 0.000 0.500 0.004
#> SRR1643281 5 0.4199 0.36763 0.444 0.000 0.000 0.004 0.544 0.008
#> SRR1643282 1 0.4126 -0.25600 0.512 0.000 0.000 0.004 0.480 0.004
#> SRR1643283 5 0.4111 0.34692 0.456 0.000 0.000 0.004 0.536 0.004
#> SRR1643284 5 0.3999 0.27173 0.496 0.000 0.000 0.000 0.500 0.004
#> SRR1643285 5 0.4126 0.30904 0.480 0.000 0.000 0.004 0.512 0.004
#> SRR1643286 5 0.4128 0.28760 0.488 0.000 0.000 0.004 0.504 0.004
#> SRR1643287 5 0.4463 0.24799 0.000 0.000 0.000 0.292 0.652 0.056
#> SRR1643288 5 0.4389 0.25915 0.000 0.000 0.000 0.288 0.660 0.052
#> SRR1643289 5 0.4535 0.23557 0.000 0.000 0.000 0.296 0.644 0.060
#> SRR1643290 5 0.4569 0.21355 0.000 0.000 0.000 0.304 0.636 0.060
#> SRR1643291 5 0.4463 0.24799 0.000 0.000 0.000 0.292 0.652 0.056
#> SRR1643292 5 0.4352 0.27046 0.000 0.000 0.000 0.280 0.668 0.052
#> SRR1643293 5 0.4291 0.28199 0.000 0.000 0.000 0.268 0.680 0.052
#> SRR1643294 5 0.4389 0.25860 0.000 0.000 0.000 0.288 0.660 0.052
#> SRR1643295 5 0.4463 0.24923 0.000 0.000 0.000 0.292 0.652 0.056
#> SRR1643296 5 0.4552 0.22665 0.000 0.000 0.000 0.300 0.640 0.060
#> SRR1643297 5 0.4637 0.19548 0.000 0.000 0.000 0.308 0.628 0.064
#> SRR1643298 5 0.4671 0.20236 0.000 0.000 0.000 0.304 0.628 0.068
#> SRR1643299 5 0.4535 0.23334 0.000 0.000 0.000 0.296 0.644 0.060
#> SRR1643300 5 0.4481 0.24097 0.000 0.000 0.000 0.296 0.648 0.056
#> SRR1643301 1 0.4744 0.59894 0.728 0.000 0.000 0.124 0.116 0.032
#> SRR1643302 1 0.3673 0.67665 0.804 0.000 0.000 0.088 0.100 0.008
#> SRR1643303 1 0.4556 0.58914 0.732 0.000 0.000 0.120 0.132 0.016
#> SRR1643304 1 0.5341 0.50486 0.676 0.000 0.000 0.136 0.140 0.048
#> SRR1643305 1 0.3619 0.69823 0.816 0.000 0.000 0.060 0.104 0.020
#> SRR1643306 1 0.3987 0.66386 0.788 0.000 0.000 0.084 0.108 0.020
#> SRR1643307 1 0.6629 0.12176 0.480 0.000 0.000 0.292 0.160 0.068
#> SRR1643308 1 0.3725 0.67921 0.804 0.000 0.000 0.092 0.092 0.012
#> SRR1643309 1 0.4451 0.61963 0.748 0.000 0.000 0.136 0.092 0.024
#> SRR1643310 1 0.4974 0.53856 0.692 0.000 0.000 0.144 0.144 0.020
#> SRR1643311 1 0.5147 0.52731 0.688 0.000 0.000 0.124 0.152 0.036
#> SRR1643312 1 0.3878 0.67623 0.792 0.000 0.000 0.060 0.128 0.020
#> SRR1643313 1 0.6840 0.00952 0.424 0.000 0.000 0.336 0.160 0.080
#> SRR1643314 1 0.0725 0.75796 0.976 0.000 0.000 0.000 0.012 0.012
#> SRR1643315 1 0.1296 0.75782 0.952 0.000 0.000 0.004 0.032 0.012
#> SRR1643316 1 0.1370 0.75671 0.948 0.000 0.000 0.004 0.036 0.012
#> SRR1643317 1 0.1218 0.75943 0.956 0.000 0.000 0.004 0.028 0.012
#> SRR1643318 1 0.1138 0.75844 0.960 0.000 0.000 0.004 0.024 0.012
#> SRR1643319 1 0.0508 0.75661 0.984 0.000 0.000 0.000 0.012 0.004
#> SRR1643320 1 0.0972 0.75856 0.964 0.000 0.000 0.000 0.028 0.008
#> SRR1643321 1 0.1036 0.75931 0.964 0.000 0.000 0.004 0.024 0.008
#> SRR1643322 1 0.0717 0.75777 0.976 0.000 0.000 0.000 0.016 0.008
#> SRR1643323 1 0.0993 0.75881 0.964 0.000 0.000 0.000 0.024 0.012
#> SRR1643324 1 0.1218 0.75814 0.956 0.000 0.000 0.004 0.028 0.012
#> SRR1643325 1 0.0993 0.75839 0.964 0.000 0.000 0.000 0.024 0.012
#> SRR1643326 1 0.1116 0.75849 0.960 0.000 0.000 0.004 0.028 0.008
#> SRR1643327 1 0.1296 0.75796 0.952 0.000 0.000 0.004 0.032 0.012
#> SRR1643328 1 0.0935 0.75154 0.964 0.000 0.000 0.000 0.032 0.004
#> SRR1643329 1 0.0777 0.75360 0.972 0.000 0.000 0.000 0.024 0.004
#> SRR1643330 1 0.0858 0.75282 0.968 0.000 0.000 0.000 0.028 0.004
#> SRR1643331 1 0.0858 0.75271 0.968 0.000 0.000 0.000 0.028 0.004
#> SRR1643332 1 0.1219 0.74513 0.948 0.000 0.000 0.000 0.048 0.004
#> SRR1643333 1 0.0858 0.75271 0.968 0.000 0.000 0.000 0.028 0.004
#> SRR1643334 1 0.1152 0.74684 0.952 0.000 0.000 0.000 0.044 0.004
#> SRR1643335 1 0.1219 0.74507 0.948 0.000 0.000 0.000 0.048 0.004
#> SRR1643336 1 0.1010 0.75040 0.960 0.000 0.000 0.000 0.036 0.004
#> SRR1643337 1 0.1082 0.74871 0.956 0.000 0.000 0.000 0.040 0.004
#> SRR1643338 1 0.0935 0.75193 0.964 0.000 0.000 0.000 0.032 0.004
#> SRR1643339 1 0.1010 0.75040 0.960 0.000 0.000 0.000 0.036 0.004
#> SRR1643340 1 0.0777 0.75360 0.972 0.000 0.000 0.000 0.024 0.004
#> SRR1643341 1 0.0935 0.75154 0.964 0.000 0.000 0.000 0.032 0.004
#> SRR1643342 1 0.0935 0.75154 0.964 0.000 0.000 0.000 0.032 0.004
#> SRR1643343 5 0.4404 0.49625 0.400 0.000 0.000 0.008 0.576 0.016
#> SRR1643344 5 0.4412 0.49077 0.404 0.000 0.000 0.008 0.572 0.016
#> SRR1643345 5 0.4481 0.49772 0.400 0.000 0.000 0.008 0.572 0.020
#> SRR1643346 5 0.4561 0.50205 0.392 0.000 0.000 0.016 0.576 0.016
#> SRR1643347 5 0.4486 0.50071 0.396 0.000 0.000 0.012 0.576 0.016
#> SRR1643348 5 0.4486 0.50071 0.396 0.000 0.000 0.012 0.576 0.016
#> SRR1643349 5 0.4395 0.50047 0.396 0.000 0.000 0.008 0.580 0.016
#> SRR1643350 5 0.4561 0.50205 0.392 0.000 0.000 0.016 0.576 0.016
#> SRR1643351 5 0.4412 0.49077 0.404 0.000 0.000 0.008 0.572 0.016
#> SRR1643352 5 0.4486 0.50071 0.396 0.000 0.000 0.012 0.576 0.016
#> SRR1643353 5 0.4638 0.50202 0.392 0.000 0.000 0.016 0.572 0.020
#> SRR1643354 5 0.4561 0.50205 0.392 0.000 0.000 0.016 0.576 0.016
#> SRR1643355 5 0.4494 0.49606 0.400 0.000 0.000 0.012 0.572 0.016
#> SRR1643356 5 0.4564 0.50117 0.396 0.000 0.000 0.012 0.572 0.020
#> SRR1643357 5 0.4486 0.50071 0.396 0.000 0.000 0.012 0.576 0.016
#> SRR1643358 4 0.1464 0.82256 0.004 0.000 0.000 0.944 0.036 0.016
#> SRR1643359 4 0.1821 0.81695 0.008 0.000 0.000 0.928 0.040 0.024
#> SRR1643360 4 0.1693 0.81858 0.004 0.000 0.000 0.932 0.044 0.020
#> SRR1643361 4 0.1268 0.82557 0.004 0.000 0.000 0.952 0.036 0.008
#> SRR1643362 4 0.1820 0.81560 0.012 0.000 0.000 0.928 0.044 0.016
#> SRR1643363 4 0.1218 0.82638 0.004 0.000 0.000 0.956 0.028 0.012
#> SRR1643364 4 0.1636 0.82110 0.004 0.000 0.000 0.936 0.036 0.024
#> SRR1643365 4 0.1718 0.81786 0.008 0.000 0.000 0.932 0.044 0.016
#> SRR1643366 4 0.1194 0.82635 0.004 0.000 0.000 0.956 0.032 0.008
#> SRR1643367 4 0.1053 0.82785 0.004 0.000 0.000 0.964 0.020 0.012
#> SRR1643368 4 0.1750 0.81789 0.012 0.000 0.000 0.932 0.040 0.016
#> SRR1643369 4 0.1737 0.81821 0.008 0.000 0.000 0.932 0.040 0.020
#> SRR1643370 4 0.1708 0.81878 0.004 0.000 0.000 0.932 0.040 0.024
#> SRR1643371 4 0.1624 0.82010 0.004 0.000 0.000 0.936 0.040 0.020
#> SRR1643372 4 0.1313 0.82541 0.004 0.000 0.000 0.952 0.028 0.016
#> SRR1643373 4 0.1074 0.82831 0.000 0.000 0.000 0.960 0.028 0.012
#> SRR1643374 4 0.1151 0.82737 0.000 0.000 0.000 0.956 0.032 0.012
#> SRR1643375 4 0.1151 0.82737 0.000 0.000 0.000 0.956 0.032 0.012
#> SRR1643376 4 0.1151 0.82737 0.000 0.000 0.000 0.956 0.032 0.012
#> SRR1643377 4 0.1151 0.82737 0.000 0.000 0.000 0.956 0.032 0.012
#> SRR1643378 4 0.0972 0.82848 0.000 0.000 0.000 0.964 0.028 0.008
#> SRR1643379 4 0.1074 0.82831 0.000 0.000 0.000 0.960 0.028 0.012
#> SRR1643380 4 0.1074 0.82814 0.000 0.000 0.000 0.960 0.028 0.012
#> SRR1643381 4 0.1225 0.82664 0.000 0.000 0.000 0.952 0.036 0.012
#> SRR1643382 4 0.1074 0.82831 0.000 0.000 0.000 0.960 0.028 0.012
#> SRR1643383 4 0.1151 0.82737 0.000 0.000 0.000 0.956 0.032 0.012
#> SRR1643384 4 0.0993 0.82858 0.000 0.000 0.000 0.964 0.024 0.012
#> SRR1643385 4 0.1074 0.82831 0.000 0.000 0.000 0.960 0.028 0.012
#> SRR1643386 4 0.1088 0.82898 0.000 0.000 0.000 0.960 0.024 0.016
#> SRR1643387 4 0.0993 0.82864 0.000 0.000 0.000 0.964 0.024 0.012
#> SRR1643388 4 0.1151 0.82737 0.000 0.000 0.000 0.956 0.032 0.012
#> SRR1643389 4 0.1074 0.82792 0.000 0.000 0.000 0.960 0.028 0.012
#> SRR1643390 1 0.2070 0.71288 0.892 0.000 0.000 0.000 0.100 0.008
#> SRR1643391 1 0.1918 0.72084 0.904 0.000 0.000 0.000 0.088 0.008
#> SRR1643392 1 0.2070 0.71288 0.892 0.000 0.000 0.000 0.100 0.008
#> SRR1643393 1 0.2020 0.71467 0.896 0.000 0.000 0.000 0.096 0.008
#> SRR1643394 1 0.2070 0.71288 0.892 0.000 0.000 0.000 0.100 0.008
#> SRR1643395 1 0.1970 0.71773 0.900 0.000 0.000 0.000 0.092 0.008
#> SRR1643396 1 0.2070 0.71288 0.892 0.000 0.000 0.000 0.100 0.008
#> SRR1643397 1 0.1970 0.71773 0.900 0.000 0.000 0.000 0.092 0.008
#> SRR1643398 1 0.2020 0.71467 0.896 0.000 0.000 0.000 0.096 0.008
#> SRR1643399 1 0.2020 0.71467 0.896 0.000 0.000 0.000 0.096 0.008
#> SRR1643400 1 0.1970 0.71773 0.900 0.000 0.000 0.000 0.092 0.008
#> SRR1643401 1 0.2070 0.71288 0.892 0.000 0.000 0.000 0.100 0.008
#> SRR1643402 1 0.2118 0.70957 0.888 0.000 0.000 0.000 0.104 0.008
#> SRR1643403 1 0.2020 0.71467 0.896 0.000 0.000 0.000 0.096 0.008
#> SRR1643404 1 0.2020 0.71467 0.896 0.000 0.000 0.000 0.096 0.008
#> SRR1643405 1 0.3490 0.45723 0.724 0.000 0.000 0.000 0.268 0.008
#> SRR1643406 1 0.3421 0.48450 0.736 0.000 0.000 0.000 0.256 0.008
#> SRR1643407 1 0.3490 0.45691 0.724 0.000 0.000 0.000 0.268 0.008
#> SRR1643408 1 0.3445 0.47538 0.732 0.000 0.000 0.000 0.260 0.008
#> SRR1643409 1 0.3512 0.44730 0.720 0.000 0.000 0.000 0.272 0.008
#> SRR1643410 1 0.3534 0.43685 0.716 0.000 0.000 0.000 0.276 0.008
#> SRR1643411 1 0.3468 0.46673 0.728 0.000 0.000 0.000 0.264 0.008
#> SRR1643412 1 0.3575 0.41609 0.708 0.000 0.000 0.000 0.284 0.008
#> SRR1643413 1 0.3323 0.51683 0.752 0.000 0.000 0.000 0.240 0.008
#> SRR1643414 1 0.3490 0.45745 0.724 0.000 0.000 0.000 0.268 0.008
#> SRR1643415 1 0.3534 0.43685 0.716 0.000 0.000 0.000 0.276 0.008
#> SRR1643416 1 0.3373 0.50077 0.744 0.000 0.000 0.000 0.248 0.008
#> SRR1643417 1 0.3490 0.45684 0.724 0.000 0.000 0.000 0.268 0.008
#> SRR1643418 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643419 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643420 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643421 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643422 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643423 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643424 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643425 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643426 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643427 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643428 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643429 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643430 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643431 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643432 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643433 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643434 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643435 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643436 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643437 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643438 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643439 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643440 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643441 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643442 4 0.4634 0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643443 6 0.4390 0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643444 6 0.4390 0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643445 6 0.4390 0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643446 6 0.4390 0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643447 6 0.4390 0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643448 6 0.4390 0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643449 6 0.4390 0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643450 6 0.4390 0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643451 6 0.4390 0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643452 6 0.4390 0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643453 6 0.4390 0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643454 6 0.4390 0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643455 6 0.4390 0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643456 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643457 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643458 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643459 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643460 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643461 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643462 2 0.0146 0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643463 2 0.0146 0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643464 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643466 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643467 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643468 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643469 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643470 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643471 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643472 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643473 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643474 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643475 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643477 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643478 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643479 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643480 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643481 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643482 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643483 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643484 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643485 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643486 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643487 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643488 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643489 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643490 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643491 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643492 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643493 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643494 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643495 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643496 2 0.0000 0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643497 2 0.2563 0.88516 0.000 0.884 0.008 0.000 0.068 0.040
#> SRR1643498 2 0.2265 0.90318 0.000 0.900 0.008 0.000 0.068 0.024
#> SRR1643499 2 0.2420 0.89527 0.000 0.892 0.008 0.000 0.068 0.032
#> SRR1643500 2 0.2094 0.91043 0.000 0.908 0.008 0.000 0.068 0.016
#> SRR1643501 2 0.2420 0.89476 0.000 0.892 0.008 0.000 0.068 0.032
#> SRR1643502 2 0.2182 0.90755 0.000 0.904 0.008 0.000 0.068 0.020
#> SRR1643503 2 0.2182 0.90760 0.000 0.904 0.008 0.000 0.068 0.020
#> SRR1643504 2 0.2094 0.91043 0.000 0.908 0.008 0.000 0.068 0.016
#> SRR1643505 2 0.2697 0.87460 0.000 0.876 0.008 0.000 0.068 0.048
#> SRR1643506 2 0.2265 0.90350 0.000 0.900 0.008 0.000 0.068 0.024
#> SRR1643507 2 0.2631 0.87962 0.000 0.880 0.008 0.000 0.068 0.044
#> SRR1643508 2 0.2182 0.90717 0.000 0.904 0.008 0.000 0.068 0.020
#> SRR1643509 2 0.2182 0.90708 0.000 0.904 0.008 0.000 0.068 0.020
#> SRR1643510 2 0.2420 0.89462 0.000 0.892 0.008 0.000 0.068 0.032
#> SRR1643511 2 0.2631 0.87964 0.000 0.880 0.008 0.000 0.068 0.044
#> SRR1643512 2 0.1900 0.91659 0.000 0.916 0.008 0.000 0.068 0.008
#> SRR1643513 2 0.2563 0.88505 0.000 0.884 0.008 0.000 0.068 0.040
#> SRR1643531 6 0.3758 0.97884 0.000 0.284 0.000 0.000 0.016 0.700
#> SRR1643532 6 0.3895 0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643533 6 0.3895 0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643534 6 0.3895 0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643535 6 0.3895 0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643536 6 0.3895 0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643537 6 0.3895 0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643538 6 0.3895 0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643539 6 0.3895 0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643540 6 0.3895 0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643541 6 0.3895 0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643542 6 0.3895 0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643543 6 0.3895 0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643544 6 0.3895 0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643514 6 0.3371 0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643515 6 0.3371 0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643516 6 0.3351 0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643517 6 0.3371 0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643518 6 0.3351 0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643519 6 0.3390 0.97635 0.000 0.296 0.000 0.000 0.000 0.704
#> SRR1643520 6 0.3371 0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643521 6 0.3371 0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643522 6 0.3371 0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643523 6 0.3351 0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643524 6 0.3371 0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643525 6 0.3371 0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643526 6 0.3371 0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643527 6 0.3371 0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643528 6 0.3390 0.97635 0.000 0.296 0.000 0.000 0.000 0.704
#> SRR1643529 6 0.3351 0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643530 6 0.3351 0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643545 2 0.0146 0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643546 2 0.0146 0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643547 2 0.0146 0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643548 2 0.0146 0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643549 2 0.0146 0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643550 2 0.0146 0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643551 2 0.0260 0.96565 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643552 2 0.0146 0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643553 2 0.0146 0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643554 2 0.0146 0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643555 2 0.0146 0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643556 2 0.0146 0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643558 2 0.0146 0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643559 6 0.3351 0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643560 6 0.3351 0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643561 6 0.3351 0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643562 6 0.3351 0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643563 6 0.3351 0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643564 6 0.3351 0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643565 6 0.3351 0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643566 6 0.3351 0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643567 6 0.3351 0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643568 6 0.3351 0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643569 6 0.3351 0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643570 6 0.3351 0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643571 6 0.3351 0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643572 6 0.3351 0.98083 0.000 0.288 0.000 0.000 0.000 0.712
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["MAD", "hclust"]
# you can also extract it by
# res = res_list["MAD:hclust"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'MAD' method.
#> Subgroups are detected by 'hclust' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 3.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.4350 0.566 0.566
#> 3 3 1.000 1.000 1.000 0.2899 0.874 0.777
#> 4 4 0.835 0.946 0.946 0.0572 0.998 0.996
#> 5 5 0.757 0.824 0.863 0.0942 1.000 1.000
#> 6 6 0.749 0.899 0.836 0.1297 0.785 0.509
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 3
#> attr(,"optional")
#> [1] 2
There is also optional best \(k\) = 2 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0 1 1 0 0
#> SRR1643168 1 0 1 1 0 0
#> SRR1643169 1 0 1 1 0 0
#> SRR1643170 1 0 1 1 0 0
#> SRR1643171 1 0 1 1 0 0
#> SRR1643172 1 0 1 1 0 0
#> SRR1643173 1 0 1 1 0 0
#> SRR1643174 1 0 1 1 0 0
#> SRR1643175 1 0 1 1 0 0
#> SRR1643176 1 0 1 1 0 0
#> SRR1643177 1 0 1 1 0 0
#> SRR1643178 1 0 1 1 0 0
#> SRR1643180 1 0 1 1 0 0
#> SRR1643181 1 0 1 1 0 0
#> SRR1643182 1 0 1 1 0 0
#> SRR1643183 1 0 1 1 0 0
#> SRR1643184 1 0 1 1 0 0
#> SRR1643185 1 0 1 1 0 0
#> SRR1643186 1 0 1 1 0 0
#> SRR1643187 1 0 1 1 0 0
#> SRR1643188 1 0 1 1 0 0
#> SRR1643189 1 0 1 1 0 0
#> SRR1643190 1 0 1 1 0 0
#> SRR1643191 1 0 1 1 0 0
#> SRR1643192 1 0 1 1 0 0
#> SRR1643193 1 0 1 1 0 0
#> SRR1643194 1 0 1 1 0 0
#> SRR1643195 1 0 1 1 0 0
#> SRR1643196 1 0 1 1 0 0
#> SRR1643197 1 0 1 1 0 0
#> SRR1643198 1 0 1 1 0 0
#> SRR1643199 1 0 1 1 0 0
#> SRR1643200 1 0 1 1 0 0
#> SRR1643201 1 0 1 1 0 0
#> SRR1643202 1 0 1 1 0 0
#> SRR1643203 1 0 1 1 0 0
#> SRR1643204 1 0 1 1 0 0
#> SRR1643205 3 0 1 0 0 1
#> SRR1643206 3 0 1 0 0 1
#> SRR1643207 3 0 1 0 0 1
#> SRR1643208 3 0 1 0 0 1
#> SRR1643209 3 0 1 0 0 1
#> SRR1643210 3 0 1 0 0 1
#> SRR1643211 3 0 1 0 0 1
#> SRR1643212 3 0 1 0 0 1
#> SRR1643213 3 0 1 0 0 1
#> SRR1643214 3 0 1 0 0 1
#> SRR1643215 3 0 1 0 0 1
#> SRR1643216 3 0 1 0 0 1
#> SRR1643217 3 0 1 0 0 1
#> SRR1643218 3 0 1 0 0 1
#> SRR1643219 3 0 1 0 0 1
#> SRR1643220 3 0 1 0 0 1
#> SRR1643221 3 0 1 0 0 1
#> SRR1643222 3 0 1 0 0 1
#> SRR1643223 3 0 1 0 0 1
#> SRR1643224 3 0 1 0 0 1
#> SRR1643225 3 0 1 0 0 1
#> SRR1643226 3 0 1 0 0 1
#> SRR1643227 3 0 1 0 0 1
#> SRR1643228 3 0 1 0 0 1
#> SRR1643229 3 0 1 0 0 1
#> SRR1643230 3 0 1 0 0 1
#> SRR1643231 3 0 1 0 0 1
#> SRR1643232 3 0 1 0 0 1
#> SRR1643233 3 0 1 0 0 1
#> SRR1643234 3 0 1 0 0 1
#> SRR1643235 3 0 1 0 0 1
#> SRR1643236 3 0 1 0 0 1
#> SRR1643237 3 0 1 0 0 1
#> SRR1643238 3 0 1 0 0 1
#> SRR1643239 3 0 1 0 0 1
#> SRR1643240 3 0 1 0 0 1
#> SRR1643241 3 0 1 0 0 1
#> SRR1643242 3 0 1 0 0 1
#> SRR1643243 3 0 1 0 0 1
#> SRR1643245 3 0 1 0 0 1
#> SRR1643246 3 0 1 0 0 1
#> SRR1643247 3 0 1 0 0 1
#> SRR1643248 3 0 1 0 0 1
#> SRR1643249 3 0 1 0 0 1
#> SRR1643250 1 0 1 1 0 0
#> SRR1643251 1 0 1 1 0 0
#> SRR1643252 1 0 1 1 0 0
#> SRR1643253 1 0 1 1 0 0
#> SRR1643254 1 0 1 1 0 0
#> SRR1643255 1 0 1 1 0 0
#> SRR1643256 1 0 1 1 0 0
#> SRR1643257 1 0 1 1 0 0
#> SRR1643258 1 0 1 1 0 0
#> SRR1643259 1 0 1 1 0 0
#> SRR1643260 1 0 1 1 0 0
#> SRR1643261 1 0 1 1 0 0
#> SRR1643262 1 0 1 1 0 0
#> SRR1643263 1 0 1 1 0 0
#> SRR1643264 1 0 1 1 0 0
#> SRR1643266 1 0 1 1 0 0
#> SRR1643267 1 0 1 1 0 0
#> SRR1643268 1 0 1 1 0 0
#> SRR1643269 1 0 1 1 0 0
#> SRR1643270 1 0 1 1 0 0
#> SRR1643271 1 0 1 1 0 0
#> SRR1643272 1 0 1 1 0 0
#> SRR1643273 1 0 1 1 0 0
#> SRR1643274 1 0 1 1 0 0
#> SRR1643275 1 0 1 1 0 0
#> SRR1643276 1 0 1 1 0 0
#> SRR1643277 1 0 1 1 0 0
#> SRR1643278 1 0 1 1 0 0
#> SRR1643279 1 0 1 1 0 0
#> SRR1643280 1 0 1 1 0 0
#> SRR1643281 1 0 1 1 0 0
#> SRR1643282 1 0 1 1 0 0
#> SRR1643283 1 0 1 1 0 0
#> SRR1643284 1 0 1 1 0 0
#> SRR1643285 1 0 1 1 0 0
#> SRR1643286 1 0 1 1 0 0
#> SRR1643287 1 0 1 1 0 0
#> SRR1643288 1 0 1 1 0 0
#> SRR1643289 1 0 1 1 0 0
#> SRR1643290 1 0 1 1 0 0
#> SRR1643291 1 0 1 1 0 0
#> SRR1643292 1 0 1 1 0 0
#> SRR1643293 1 0 1 1 0 0
#> SRR1643294 1 0 1 1 0 0
#> SRR1643295 1 0 1 1 0 0
#> SRR1643296 1 0 1 1 0 0
#> SRR1643297 1 0 1 1 0 0
#> SRR1643298 1 0 1 1 0 0
#> SRR1643299 1 0 1 1 0 0
#> SRR1643300 1 0 1 1 0 0
#> SRR1643301 1 0 1 1 0 0
#> SRR1643302 1 0 1 1 0 0
#> SRR1643303 1 0 1 1 0 0
#> SRR1643304 1 0 1 1 0 0
#> SRR1643305 1 0 1 1 0 0
#> SRR1643306 1 0 1 1 0 0
#> SRR1643307 1 0 1 1 0 0
#> SRR1643308 1 0 1 1 0 0
#> SRR1643309 1 0 1 1 0 0
#> SRR1643310 1 0 1 1 0 0
#> SRR1643311 1 0 1 1 0 0
#> SRR1643312 1 0 1 1 0 0
#> SRR1643313 1 0 1 1 0 0
#> SRR1643314 1 0 1 1 0 0
#> SRR1643315 1 0 1 1 0 0
#> SRR1643316 1 0 1 1 0 0
#> SRR1643317 1 0 1 1 0 0
#> SRR1643318 1 0 1 1 0 0
#> SRR1643319 1 0 1 1 0 0
#> SRR1643320 1 0 1 1 0 0
#> SRR1643321 1 0 1 1 0 0
#> SRR1643322 1 0 1 1 0 0
#> SRR1643323 1 0 1 1 0 0
#> SRR1643324 1 0 1 1 0 0
#> SRR1643325 1 0 1 1 0 0
#> SRR1643326 1 0 1 1 0 0
#> SRR1643327 1 0 1 1 0 0
#> SRR1643328 1 0 1 1 0 0
#> SRR1643329 1 0 1 1 0 0
#> SRR1643330 1 0 1 1 0 0
#> SRR1643331 1 0 1 1 0 0
#> SRR1643332 1 0 1 1 0 0
#> SRR1643333 1 0 1 1 0 0
#> SRR1643334 1 0 1 1 0 0
#> SRR1643335 1 0 1 1 0 0
#> SRR1643336 1 0 1 1 0 0
#> SRR1643337 1 0 1 1 0 0
#> SRR1643338 1 0 1 1 0 0
#> SRR1643339 1 0 1 1 0 0
#> SRR1643340 1 0 1 1 0 0
#> SRR1643341 1 0 1 1 0 0
#> SRR1643342 1 0 1 1 0 0
#> SRR1643343 1 0 1 1 0 0
#> SRR1643344 1 0 1 1 0 0
#> SRR1643345 1 0 1 1 0 0
#> SRR1643346 1 0 1 1 0 0
#> SRR1643347 1 0 1 1 0 0
#> SRR1643348 1 0 1 1 0 0
#> SRR1643349 1 0 1 1 0 0
#> SRR1643350 1 0 1 1 0 0
#> SRR1643351 1 0 1 1 0 0
#> SRR1643352 1 0 1 1 0 0
#> SRR1643353 1 0 1 1 0 0
#> SRR1643354 1 0 1 1 0 0
#> SRR1643355 1 0 1 1 0 0
#> SRR1643356 1 0 1 1 0 0
#> SRR1643357 1 0 1 1 0 0
#> SRR1643358 1 0 1 1 0 0
#> SRR1643359 1 0 1 1 0 0
#> SRR1643360 1 0 1 1 0 0
#> SRR1643361 1 0 1 1 0 0
#> SRR1643362 1 0 1 1 0 0
#> SRR1643363 1 0 1 1 0 0
#> SRR1643364 1 0 1 1 0 0
#> SRR1643365 1 0 1 1 0 0
#> SRR1643366 1 0 1 1 0 0
#> SRR1643367 1 0 1 1 0 0
#> SRR1643368 1 0 1 1 0 0
#> SRR1643369 1 0 1 1 0 0
#> SRR1643370 1 0 1 1 0 0
#> SRR1643371 1 0 1 1 0 0
#> SRR1643372 1 0 1 1 0 0
#> SRR1643373 1 0 1 1 0 0
#> SRR1643374 1 0 1 1 0 0
#> SRR1643375 1 0 1 1 0 0
#> SRR1643376 1 0 1 1 0 0
#> SRR1643377 1 0 1 1 0 0
#> SRR1643378 1 0 1 1 0 0
#> SRR1643379 1 0 1 1 0 0
#> SRR1643380 1 0 1 1 0 0
#> SRR1643381 1 0 1 1 0 0
#> SRR1643382 1 0 1 1 0 0
#> SRR1643383 1 0 1 1 0 0
#> SRR1643384 1 0 1 1 0 0
#> SRR1643385 1 0 1 1 0 0
#> SRR1643386 1 0 1 1 0 0
#> SRR1643387 1 0 1 1 0 0
#> SRR1643388 1 0 1 1 0 0
#> SRR1643389 1 0 1 1 0 0
#> SRR1643390 1 0 1 1 0 0
#> SRR1643391 1 0 1 1 0 0
#> SRR1643392 1 0 1 1 0 0
#> SRR1643393 1 0 1 1 0 0
#> SRR1643394 1 0 1 1 0 0
#> SRR1643395 1 0 1 1 0 0
#> SRR1643396 1 0 1 1 0 0
#> SRR1643397 1 0 1 1 0 0
#> SRR1643398 1 0 1 1 0 0
#> SRR1643399 1 0 1 1 0 0
#> SRR1643400 1 0 1 1 0 0
#> SRR1643401 1 0 1 1 0 0
#> SRR1643402 1 0 1 1 0 0
#> SRR1643403 1 0 1 1 0 0
#> SRR1643404 1 0 1 1 0 0
#> SRR1643405 1 0 1 1 0 0
#> SRR1643406 1 0 1 1 0 0
#> SRR1643407 1 0 1 1 0 0
#> SRR1643408 1 0 1 1 0 0
#> SRR1643409 1 0 1 1 0 0
#> SRR1643410 1 0 1 1 0 0
#> SRR1643411 1 0 1 1 0 0
#> SRR1643412 1 0 1 1 0 0
#> SRR1643413 1 0 1 1 0 0
#> SRR1643414 1 0 1 1 0 0
#> SRR1643415 1 0 1 1 0 0
#> SRR1643416 1 0 1 1 0 0
#> SRR1643417 1 0 1 1 0 0
#> SRR1643418 1 0 1 1 0 0
#> SRR1643419 1 0 1 1 0 0
#> SRR1643420 1 0 1 1 0 0
#> SRR1643421 1 0 1 1 0 0
#> SRR1643422 1 0 1 1 0 0
#> SRR1643423 1 0 1 1 0 0
#> SRR1643424 1 0 1 1 0 0
#> SRR1643425 1 0 1 1 0 0
#> SRR1643426 1 0 1 1 0 0
#> SRR1643427 1 0 1 1 0 0
#> SRR1643428 1 0 1 1 0 0
#> SRR1643429 1 0 1 1 0 0
#> SRR1643430 1 0 1 1 0 0
#> SRR1643431 1 0 1 1 0 0
#> SRR1643432 1 0 1 1 0 0
#> SRR1643433 1 0 1 1 0 0
#> SRR1643434 1 0 1 1 0 0
#> SRR1643435 1 0 1 1 0 0
#> SRR1643436 1 0 1 1 0 0
#> SRR1643437 1 0 1 1 0 0
#> SRR1643438 1 0 1 1 0 0
#> SRR1643439 1 0 1 1 0 0
#> SRR1643440 1 0 1 1 0 0
#> SRR1643441 1 0 1 1 0 0
#> SRR1643442 1 0 1 1 0 0
#> SRR1643443 2 0 1 0 1 0
#> SRR1643444 2 0 1 0 1 0
#> SRR1643445 2 0 1 0 1 0
#> SRR1643446 2 0 1 0 1 0
#> SRR1643447 2 0 1 0 1 0
#> SRR1643448 2 0 1 0 1 0
#> SRR1643449 2 0 1 0 1 0
#> SRR1643450 2 0 1 0 1 0
#> SRR1643451 2 0 1 0 1 0
#> SRR1643452 2 0 1 0 1 0
#> SRR1643453 2 0 1 0 1 0
#> SRR1643454 2 0 1 0 1 0
#> SRR1643455 2 0 1 0 1 0
#> SRR1643456 2 0 1 0 1 0
#> SRR1643457 2 0 1 0 1 0
#> SRR1643458 2 0 1 0 1 0
#> SRR1643459 2 0 1 0 1 0
#> SRR1643460 2 0 1 0 1 0
#> SRR1643461 2 0 1 0 1 0
#> SRR1643462 2 0 1 0 1 0
#> SRR1643463 2 0 1 0 1 0
#> SRR1643464 2 0 1 0 1 0
#> SRR1643466 2 0 1 0 1 0
#> SRR1643467 2 0 1 0 1 0
#> SRR1643468 2 0 1 0 1 0
#> SRR1643469 2 0 1 0 1 0
#> SRR1643470 2 0 1 0 1 0
#> SRR1643471 2 0 1 0 1 0
#> SRR1643472 2 0 1 0 1 0
#> SRR1643473 2 0 1 0 1 0
#> SRR1643474 2 0 1 0 1 0
#> SRR1643475 2 0 1 0 1 0
#> SRR1643477 2 0 1 0 1 0
#> SRR1643478 2 0 1 0 1 0
#> SRR1643479 2 0 1 0 1 0
#> SRR1643480 2 0 1 0 1 0
#> SRR1643481 2 0 1 0 1 0
#> SRR1643482 2 0 1 0 1 0
#> SRR1643483 2 0 1 0 1 0
#> SRR1643484 2 0 1 0 1 0
#> SRR1643485 2 0 1 0 1 0
#> SRR1643486 2 0 1 0 1 0
#> SRR1643487 2 0 1 0 1 0
#> SRR1643488 2 0 1 0 1 0
#> SRR1643489 2 0 1 0 1 0
#> SRR1643490 2 0 1 0 1 0
#> SRR1643491 2 0 1 0 1 0
#> SRR1643492 2 0 1 0 1 0
#> SRR1643493 2 0 1 0 1 0
#> SRR1643494 2 0 1 0 1 0
#> SRR1643495 2 0 1 0 1 0
#> SRR1643496 2 0 1 0 1 0
#> SRR1643497 2 0 1 0 1 0
#> SRR1643498 2 0 1 0 1 0
#> SRR1643499 2 0 1 0 1 0
#> SRR1643500 2 0 1 0 1 0
#> SRR1643501 2 0 1 0 1 0
#> SRR1643502 2 0 1 0 1 0
#> SRR1643503 2 0 1 0 1 0
#> SRR1643504 2 0 1 0 1 0
#> SRR1643505 2 0 1 0 1 0
#> SRR1643506 2 0 1 0 1 0
#> SRR1643507 2 0 1 0 1 0
#> SRR1643508 2 0 1 0 1 0
#> SRR1643509 2 0 1 0 1 0
#> SRR1643510 2 0 1 0 1 0
#> SRR1643511 2 0 1 0 1 0
#> SRR1643512 2 0 1 0 1 0
#> SRR1643513 2 0 1 0 1 0
#> SRR1643531 2 0 1 0 1 0
#> SRR1643532 2 0 1 0 1 0
#> SRR1643533 2 0 1 0 1 0
#> SRR1643534 2 0 1 0 1 0
#> SRR1643535 2 0 1 0 1 0
#> SRR1643536 2 0 1 0 1 0
#> SRR1643537 2 0 1 0 1 0
#> SRR1643538 2 0 1 0 1 0
#> SRR1643539 2 0 1 0 1 0
#> SRR1643540 2 0 1 0 1 0
#> SRR1643541 2 0 1 0 1 0
#> SRR1643542 2 0 1 0 1 0
#> SRR1643543 2 0 1 0 1 0
#> SRR1643544 2 0 1 0 1 0
#> SRR1643514 2 0 1 0 1 0
#> SRR1643515 2 0 1 0 1 0
#> SRR1643516 2 0 1 0 1 0
#> SRR1643517 2 0 1 0 1 0
#> SRR1643518 2 0 1 0 1 0
#> SRR1643519 2 0 1 0 1 0
#> SRR1643520 2 0 1 0 1 0
#> SRR1643521 2 0 1 0 1 0
#> SRR1643522 2 0 1 0 1 0
#> SRR1643523 2 0 1 0 1 0
#> SRR1643524 2 0 1 0 1 0
#> SRR1643525 2 0 1 0 1 0
#> SRR1643526 2 0 1 0 1 0
#> SRR1643527 2 0 1 0 1 0
#> SRR1643528 2 0 1 0 1 0
#> SRR1643529 2 0 1 0 1 0
#> SRR1643530 2 0 1 0 1 0
#> SRR1643545 2 0 1 0 1 0
#> SRR1643546 2 0 1 0 1 0
#> SRR1643547 2 0 1 0 1 0
#> SRR1643548 2 0 1 0 1 0
#> SRR1643549 2 0 1 0 1 0
#> SRR1643550 2 0 1 0 1 0
#> SRR1643551 2 0 1 0 1 0
#> SRR1643552 2 0 1 0 1 0
#> SRR1643553 2 0 1 0 1 0
#> SRR1643554 2 0 1 0 1 0
#> SRR1643555 2 0 1 0 1 0
#> SRR1643556 2 0 1 0 1 0
#> SRR1643558 2 0 1 0 1 0
#> SRR1643559 2 0 1 0 1 0
#> SRR1643560 2 0 1 0 1 0
#> SRR1643561 2 0 1 0 1 0
#> SRR1643562 2 0 1 0 1 0
#> SRR1643563 2 0 1 0 1 0
#> SRR1643564 2 0 1 0 1 0
#> SRR1643565 2 0 1 0 1 0
#> SRR1643566 2 0 1 0 1 0
#> SRR1643567 2 0 1 0 1 0
#> SRR1643568 2 0 1 0 1 0
#> SRR1643569 2 0 1 0 1 0
#> SRR1643570 2 0 1 0 1 0
#> SRR1643571 2 0 1 0 1 0
#> SRR1643572 2 0 1 0 1 0
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643168 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643169 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643170 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643171 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643172 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643173 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643174 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643175 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643176 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643177 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643178 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643180 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643181 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643182 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643183 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643184 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643185 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643186 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643187 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643188 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643189 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643190 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643191 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643192 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643193 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643194 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643195 1 0.3219 0.910 0.836 0 0.0 0.164
#> SRR1643196 1 0.3219 0.910 0.836 0 0.0 0.164
#> SRR1643197 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643198 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643199 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643200 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643201 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643202 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643203 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643204 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643205 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643206 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643207 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643208 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643209 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643210 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643211 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643212 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643213 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643214 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643215 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643216 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643217 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643218 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643219 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643220 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643221 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643222 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643223 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643224 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643225 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643226 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643227 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643228 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643229 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643230 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643231 4 0.3610 1.000 0.000 0 0.2 0.800
#> SRR1643232 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643233 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643234 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643235 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643236 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643237 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643238 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643239 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643240 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643241 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643242 4 0.3610 1.000 0.000 0 0.2 0.800
#> SRR1643243 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643245 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643246 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643247 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643248 3 0.0000 1.000 0.000 0 1.0 0.000
#> SRR1643249 4 0.3610 1.000 0.000 0 0.2 0.800
#> SRR1643250 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643251 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643252 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643253 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643254 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643255 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643256 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643257 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643258 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643259 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643260 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643261 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643262 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643263 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643264 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643266 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643267 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643268 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643269 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643270 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643271 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643272 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643273 1 0.0000 0.906 1.000 0 0.0 0.000
#> SRR1643274 1 0.0000 0.906 1.000 0 0.0 0.000
#> SRR1643275 1 0.0000 0.906 1.000 0 0.0 0.000
#> SRR1643276 1 0.0000 0.906 1.000 0 0.0 0.000
#> SRR1643277 1 0.0000 0.906 1.000 0 0.0 0.000
#> SRR1643278 1 0.0000 0.906 1.000 0 0.0 0.000
#> SRR1643279 1 0.0000 0.906 1.000 0 0.0 0.000
#> SRR1643280 1 0.0000 0.906 1.000 0 0.0 0.000
#> SRR1643281 1 0.0000 0.906 1.000 0 0.0 0.000
#> SRR1643282 1 0.0000 0.906 1.000 0 0.0 0.000
#> SRR1643283 1 0.0000 0.906 1.000 0 0.0 0.000
#> SRR1643284 1 0.0000 0.906 1.000 0 0.0 0.000
#> SRR1643285 1 0.0000 0.906 1.000 0 0.0 0.000
#> SRR1643286 1 0.0000 0.906 1.000 0 0.0 0.000
#> SRR1643287 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643288 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643289 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643290 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643291 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643292 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643293 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643294 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643295 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643296 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643297 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643298 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643299 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643300 1 0.0188 0.906 0.996 0 0.0 0.004
#> SRR1643301 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643302 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643303 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643304 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643305 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643306 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643307 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643308 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643309 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643310 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643311 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643312 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643313 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643314 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643315 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643316 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643317 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643318 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643319 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643320 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643321 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643322 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643323 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643324 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643325 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643326 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643327 1 0.2973 0.913 0.856 0 0.0 0.144
#> SRR1643328 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643329 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643330 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643331 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643332 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643333 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643334 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643335 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643336 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643337 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643338 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643339 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643340 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643341 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643342 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643343 1 0.2345 0.914 0.900 0 0.0 0.100
#> SRR1643344 1 0.2345 0.914 0.900 0 0.0 0.100
#> SRR1643345 1 0.2345 0.914 0.900 0 0.0 0.100
#> SRR1643346 1 0.2345 0.914 0.900 0 0.0 0.100
#> SRR1643347 1 0.2345 0.914 0.900 0 0.0 0.100
#> SRR1643348 1 0.2345 0.914 0.900 0 0.0 0.100
#> SRR1643349 1 0.2345 0.914 0.900 0 0.0 0.100
#> SRR1643350 1 0.2345 0.914 0.900 0 0.0 0.100
#> SRR1643351 1 0.2345 0.914 0.900 0 0.0 0.100
#> SRR1643352 1 0.2345 0.914 0.900 0 0.0 0.100
#> SRR1643353 1 0.2345 0.914 0.900 0 0.0 0.100
#> SRR1643354 1 0.2345 0.914 0.900 0 0.0 0.100
#> SRR1643355 1 0.2345 0.914 0.900 0 0.0 0.100
#> SRR1643356 1 0.2345 0.914 0.900 0 0.0 0.100
#> SRR1643357 1 0.2345 0.914 0.900 0 0.0 0.100
#> SRR1643358 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643359 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643360 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643361 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643362 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643363 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643364 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643365 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643366 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643367 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643368 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643369 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643370 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643371 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643372 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643373 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643374 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643375 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643376 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643377 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643378 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643379 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643380 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643381 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643382 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643383 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643384 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643385 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643386 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643387 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643388 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643389 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643390 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643391 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643392 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643393 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643394 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643395 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643396 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643397 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643398 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643399 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643400 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643401 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643402 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643403 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643404 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643405 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643406 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643407 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643408 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643409 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643410 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643411 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643412 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643413 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643414 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643415 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643416 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643417 1 0.3172 0.910 0.840 0 0.0 0.160
#> SRR1643418 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643419 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643420 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643421 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643422 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643423 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643424 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643425 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643426 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643427 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643428 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643429 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643430 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643431 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643432 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643433 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643434 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643435 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643436 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643437 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643438 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643439 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643440 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643441 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643442 1 0.1211 0.892 0.960 0 0.0 0.040
#> SRR1643443 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643505 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0.0 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0.0 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643168 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643169 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643170 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643171 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643172 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643173 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643174 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643175 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643176 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643177 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643178 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643180 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643181 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643182 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643183 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643184 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643185 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643186 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643187 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643188 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643189 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643190 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643191 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643192 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643193 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643194 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643195 1 0.0162 0.751 0.996 0.000 0.000 0.004 NA
#> SRR1643196 1 0.0162 0.751 0.996 0.000 0.000 0.004 NA
#> SRR1643197 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643198 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643199 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643200 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643201 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643202 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643203 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643204 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643205 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643206 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643207 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643208 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643209 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643210 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643211 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643212 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643213 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643214 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643215 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643216 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643217 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643218 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643219 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643220 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643221 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643222 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643223 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643224 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643225 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643226 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643227 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643228 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643229 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643230 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643231 4 0.4558 1.000 0.000 0.000 0.024 0.652 NA
#> SRR1643232 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643233 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643234 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643235 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643236 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643237 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643238 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643239 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643240 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643241 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643242 4 0.4558 1.000 0.000 0.000 0.024 0.652 NA
#> SRR1643243 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643245 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643246 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643247 3 0.0000 0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643248 3 0.1557 0.934 0.000 0.000 0.940 0.052 NA
#> SRR1643249 4 0.4558 1.000 0.000 0.000 0.024 0.652 NA
#> SRR1643250 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643251 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643252 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643253 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643254 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643255 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643256 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643257 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643258 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643259 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643260 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643261 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643262 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643263 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643264 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643266 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643267 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643268 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643269 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643270 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643271 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643272 1 0.3861 0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643273 1 0.3636 0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643274 1 0.3636 0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643275 1 0.3636 0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643276 1 0.3636 0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643277 1 0.3636 0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643278 1 0.3636 0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643279 1 0.3636 0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643280 1 0.3636 0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643281 1 0.3636 0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643282 1 0.3636 0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643283 1 0.3636 0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643284 1 0.3636 0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643285 1 0.3636 0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643286 1 0.3636 0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643287 1 0.3661 0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643288 1 0.3661 0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643289 1 0.3661 0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643290 1 0.3661 0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643291 1 0.3661 0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643292 1 0.3661 0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643293 1 0.3661 0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643294 1 0.3661 0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643295 1 0.3661 0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643296 1 0.3661 0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643297 1 0.3661 0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643298 1 0.3661 0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643299 1 0.3661 0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643300 1 0.3661 0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643301 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643302 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643303 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643304 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643305 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643306 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643307 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643308 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643309 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643310 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643311 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643312 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643313 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643314 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643315 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643316 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643317 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643318 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643319 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643320 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643321 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643322 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643323 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643324 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643325 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643326 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643327 1 0.2230 0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643328 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643329 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643330 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643331 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643332 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643333 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643334 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643335 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643336 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643337 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643338 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643339 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643340 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643341 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643342 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643343 1 0.2852 0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643344 1 0.2852 0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643345 1 0.2852 0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643346 1 0.2852 0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643347 1 0.2852 0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643348 1 0.2852 0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643349 1 0.2852 0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643350 1 0.2852 0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643351 1 0.2852 0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643352 1 0.2852 0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643353 1 0.2852 0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643354 1 0.2852 0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643355 1 0.2852 0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643356 1 0.2852 0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643357 1 0.2852 0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643358 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643359 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643360 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643361 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643362 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643363 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643364 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643365 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643366 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643367 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643368 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643369 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643370 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643371 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643372 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643373 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643374 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643375 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643376 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643377 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643378 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643379 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643380 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643381 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643382 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643383 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643384 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643385 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643386 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643387 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643388 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643389 1 0.6749 0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643390 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643391 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643392 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643393 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643394 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643395 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643396 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643397 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643398 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643399 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643400 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643401 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643402 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643403 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643404 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643405 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643406 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643407 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643408 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643409 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643410 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643411 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643412 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643413 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643414 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643415 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643416 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643417 1 0.0000 0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643418 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643419 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643420 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643421 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643422 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643423 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643424 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643425 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643426 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643427 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643428 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643429 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643430 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643431 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643432 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643433 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643434 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643435 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643436 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643437 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643438 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643439 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643440 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643441 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643442 1 0.6759 0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643443 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643444 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643445 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643446 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643447 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643448 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643449 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643450 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643451 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643452 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643453 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643454 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643455 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643456 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643457 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643458 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643459 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643460 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643461 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643462 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643463 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643464 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643466 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643467 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643468 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643469 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643470 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643471 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643472 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643473 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643474 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643475 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643477 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643478 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643479 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643480 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643481 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643482 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643483 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643484 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643485 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643486 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643487 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643488 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643489 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643490 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643491 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643492 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643493 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643494 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643495 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643496 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643497 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643498 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643499 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643500 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643501 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643502 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643503 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643504 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643505 2 0.4138 0.399 0.000 0.616 0.000 0.000 NA
#> SRR1643506 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643507 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643508 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643509 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643510 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643511 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643512 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643513 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643531 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643532 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643533 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643534 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643535 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643536 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643537 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643538 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643539 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643540 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643541 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643542 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643543 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643544 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643514 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643515 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643516 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643517 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643518 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643519 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643520 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643521 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643522 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643523 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643524 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643525 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643526 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643527 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643528 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643529 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643530 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643545 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643546 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643547 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643548 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643549 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643550 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643551 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643552 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643553 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643554 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643555 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643556 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643558 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643559 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643560 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643561 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643562 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643563 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643564 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643565 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643566 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643567 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643568 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643569 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643570 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643571 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643572 2 0.0000 0.997 0.000 1.000 0.000 0.000 NA
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643168 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643169 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643170 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643171 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643172 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643173 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643174 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643175 1 0.2178 0.871 0.868 0.000 0.00 0.000 0.00 0.132
#> SRR1643176 1 0.2178 0.871 0.868 0.000 0.00 0.000 0.00 0.132
#> SRR1643177 1 0.2178 0.871 0.868 0.000 0.00 0.000 0.00 0.132
#> SRR1643178 1 0.2178 0.871 0.868 0.000 0.00 0.000 0.00 0.132
#> SRR1643180 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643181 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643182 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643183 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643184 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643185 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643186 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643187 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643188 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643189 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643190 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643191 1 0.2178 0.871 0.868 0.000 0.00 0.000 0.00 0.132
#> SRR1643192 1 0.2178 0.871 0.868 0.000 0.00 0.000 0.00 0.132
#> SRR1643193 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643194 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643195 1 0.0146 0.817 0.996 0.000 0.00 0.004 0.00 0.000
#> SRR1643196 1 0.0146 0.817 0.996 0.000 0.00 0.004 0.00 0.000
#> SRR1643197 1 0.2178 0.871 0.868 0.000 0.00 0.000 0.00 0.132
#> SRR1643198 1 0.2178 0.871 0.868 0.000 0.00 0.000 0.00 0.132
#> SRR1643199 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643200 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643201 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643202 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643203 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643204 1 0.0000 0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643205 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643206 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643207 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643208 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643209 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643210 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643211 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643212 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643213 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643214 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643215 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643216 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643217 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643218 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643219 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643220 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643221 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643222 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643223 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643224 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643225 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643226 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643227 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643228 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643229 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643230 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643231 5 0.0000 1.000 0.000 0.000 0.00 0.000 1.00 0.000
#> SRR1643232 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643233 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643234 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643235 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643236 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643237 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643238 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643239 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643240 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643241 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643242 5 0.0000 1.000 0.000 0.000 0.00 0.000 1.00 0.000
#> SRR1643243 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643245 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643246 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643247 3 0.0000 0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643248 3 0.1267 0.936 0.000 0.000 0.94 0.000 0.06 0.000
#> SRR1643249 5 0.0000 1.000 0.000 0.000 0.00 0.000 1.00 0.000
#> SRR1643250 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643251 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643252 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643253 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643254 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643255 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643256 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643257 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643258 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643259 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643260 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643261 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643262 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643263 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643264 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643266 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643267 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643268 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643269 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643270 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643271 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643272 6 0.5608 0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643273 6 0.5578 0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643274 6 0.5578 0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643275 6 0.5578 0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643276 6 0.5578 0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643277 6 0.5578 0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643278 6 0.5578 0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643279 6 0.5578 0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643280 6 0.5578 0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643281 6 0.5578 0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643282 6 0.5578 0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643283 6 0.5578 0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643284 6 0.5578 0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643285 6 0.5578 0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643286 6 0.5578 0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643287 6 0.5585 0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643288 6 0.5585 0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643289 6 0.5585 0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643290 6 0.5585 0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643291 6 0.5585 0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643292 6 0.5585 0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643293 6 0.5585 0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643294 6 0.5585 0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643295 6 0.5585 0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643296 6 0.5585 0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643297 6 0.5585 0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643298 6 0.5585 0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643299 6 0.5585 0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643300 6 0.5585 0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643301 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643302 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643303 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643304 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643305 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643306 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643307 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643308 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643309 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643310 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643311 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643312 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643313 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643314 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643315 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643316 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643317 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643318 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643319 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643320 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643321 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643322 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643323 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643324 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643325 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643326 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643327 6 0.5842 0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643328 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643329 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643330 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643331 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643332 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643333 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643334 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643335 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643336 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643337 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643338 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643339 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643340 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643341 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643342 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643343 6 0.5265 0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643344 6 0.5265 0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643345 6 0.5265 0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643346 6 0.5265 0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643347 6 0.5265 0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643348 6 0.5265 0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643349 6 0.5265 0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643350 6 0.5265 0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643351 6 0.5265 0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643352 6 0.5265 0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643353 6 0.5265 0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643354 6 0.5265 0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643355 6 0.5265 0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643356 6 0.5265 0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643357 6 0.5265 0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643358 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643359 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643360 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643361 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643362 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643363 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643364 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643365 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643366 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643367 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643368 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643369 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643370 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643371 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643372 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643373 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643374 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643375 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643376 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643377 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643378 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643379 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643380 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643381 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643382 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643383 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643384 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643385 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643386 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643387 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643388 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643389 4 0.2790 0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643390 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643391 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643392 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643393 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643394 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643395 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643396 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643397 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643398 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643399 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643400 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643401 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643402 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643403 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643404 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643405 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643406 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643407 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643408 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643409 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643410 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643411 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643412 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643413 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643414 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643415 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643416 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643417 1 0.2912 0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643418 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643419 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643420 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643421 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643422 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643423 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643424 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643425 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643426 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643427 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643428 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643429 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643430 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643431 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643432 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643433 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643434 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643435 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643436 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643437 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643438 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643439 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643440 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643441 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643442 4 0.0000 0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643443 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643444 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643445 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643446 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643447 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643448 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643449 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643450 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643451 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643452 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643453 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643454 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643455 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643456 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643457 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643458 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643459 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643460 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643461 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643462 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643463 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643464 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643466 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643467 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643468 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643469 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643470 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643471 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643472 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643473 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643474 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643475 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643477 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643478 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643479 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643480 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643481 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643482 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643483 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643484 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643485 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643486 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643487 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643488 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643489 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643490 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643491 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643492 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643493 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643494 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643495 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643496 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643497 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643498 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643499 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643500 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643501 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643502 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643503 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643504 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643505 2 0.3774 0.337 0.000 0.592 0.00 0.000 0.00 0.408
#> SRR1643506 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643507 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643508 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643509 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643510 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643511 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643512 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643513 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643531 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643532 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643533 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643534 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643535 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643536 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643537 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643538 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643539 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643540 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643541 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643542 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643543 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643544 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643514 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643515 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643516 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643517 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643518 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643519 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643520 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643521 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643522 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643523 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643524 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643525 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643526 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643527 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643528 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643529 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643530 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643545 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643546 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643547 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643548 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643549 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643550 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643551 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643552 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643553 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643554 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643555 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643556 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643558 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643559 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643560 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643561 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643562 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643563 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643564 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643565 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643566 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643567 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643568 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643569 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643570 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643571 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643572 2 0.0000 0.997 0.000 1.000 0.00 0.000 0.00 0.000
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 6)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 6, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["MAD", "kmeans"]
# you can also extract it by
# res = res_list["MAD:kmeans"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'MAD' method.
#> Subgroups are detected by 'kmeans' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 2.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 0.509 0.977 0.952 0.4086 0.566 0.566
#> 3 3 0.773 0.924 0.897 0.3175 0.874 0.777
#> 4 4 0.555 0.787 0.806 0.1723 1.000 1.000
#> 5 5 0.625 0.728 0.728 0.1128 0.840 0.637
#> 6 6 0.606 0.539 0.689 0.0694 0.913 0.721
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 2
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0.000 0.980 1.000 0.000
#> SRR1643168 1 0.000 0.980 1.000 0.000
#> SRR1643169 1 0.000 0.980 1.000 0.000
#> SRR1643170 1 0.000 0.980 1.000 0.000
#> SRR1643171 1 0.000 0.980 1.000 0.000
#> SRR1643172 1 0.000 0.980 1.000 0.000
#> SRR1643173 1 0.000 0.980 1.000 0.000
#> SRR1643174 1 0.000 0.980 1.000 0.000
#> SRR1643175 1 0.000 0.980 1.000 0.000
#> SRR1643176 1 0.000 0.980 1.000 0.000
#> SRR1643177 1 0.000 0.980 1.000 0.000
#> SRR1643178 1 0.000 0.980 1.000 0.000
#> SRR1643180 1 0.000 0.980 1.000 0.000
#> SRR1643181 1 0.000 0.980 1.000 0.000
#> SRR1643182 1 0.000 0.980 1.000 0.000
#> SRR1643183 1 0.000 0.980 1.000 0.000
#> SRR1643184 1 0.000 0.980 1.000 0.000
#> SRR1643185 1 0.000 0.980 1.000 0.000
#> SRR1643186 1 0.000 0.980 1.000 0.000
#> SRR1643187 1 0.000 0.980 1.000 0.000
#> SRR1643188 1 0.000 0.980 1.000 0.000
#> SRR1643189 1 0.000 0.980 1.000 0.000
#> SRR1643190 1 0.000 0.980 1.000 0.000
#> SRR1643191 1 0.000 0.980 1.000 0.000
#> SRR1643192 1 0.000 0.980 1.000 0.000
#> SRR1643193 1 0.000 0.980 1.000 0.000
#> SRR1643194 1 0.000 0.980 1.000 0.000
#> SRR1643195 1 0.000 0.980 1.000 0.000
#> SRR1643196 1 0.000 0.980 1.000 0.000
#> SRR1643197 1 0.000 0.980 1.000 0.000
#> SRR1643198 1 0.000 0.980 1.000 0.000
#> SRR1643199 1 0.000 0.980 1.000 0.000
#> SRR1643200 1 0.000 0.980 1.000 0.000
#> SRR1643201 1 0.000 0.980 1.000 0.000
#> SRR1643202 1 0.000 0.980 1.000 0.000
#> SRR1643203 1 0.000 0.980 1.000 0.000
#> SRR1643204 1 0.000 0.980 1.000 0.000
#> SRR1643205 1 0.506 0.893 0.888 0.112
#> SRR1643206 1 0.506 0.893 0.888 0.112
#> SRR1643207 1 0.506 0.893 0.888 0.112
#> SRR1643208 1 0.506 0.893 0.888 0.112
#> SRR1643209 1 0.506 0.893 0.888 0.112
#> SRR1643210 1 0.506 0.893 0.888 0.112
#> SRR1643211 1 0.506 0.893 0.888 0.112
#> SRR1643212 1 0.506 0.893 0.888 0.112
#> SRR1643213 1 0.506 0.893 0.888 0.112
#> SRR1643214 1 0.506 0.893 0.888 0.112
#> SRR1643215 1 0.506 0.893 0.888 0.112
#> SRR1643216 1 0.506 0.893 0.888 0.112
#> SRR1643217 1 0.506 0.893 0.888 0.112
#> SRR1643218 1 0.506 0.893 0.888 0.112
#> SRR1643219 1 0.506 0.893 0.888 0.112
#> SRR1643220 1 0.506 0.893 0.888 0.112
#> SRR1643221 1 0.506 0.893 0.888 0.112
#> SRR1643222 1 0.506 0.893 0.888 0.112
#> SRR1643223 1 0.506 0.893 0.888 0.112
#> SRR1643224 1 0.506 0.893 0.888 0.112
#> SRR1643225 1 0.506 0.893 0.888 0.112
#> SRR1643226 1 0.506 0.893 0.888 0.112
#> SRR1643227 1 0.506 0.893 0.888 0.112
#> SRR1643228 1 0.506 0.893 0.888 0.112
#> SRR1643229 1 0.506 0.893 0.888 0.112
#> SRR1643230 1 0.506 0.893 0.888 0.112
#> SRR1643231 1 0.506 0.893 0.888 0.112
#> SRR1643232 1 0.506 0.893 0.888 0.112
#> SRR1643233 1 0.506 0.893 0.888 0.112
#> SRR1643234 1 0.506 0.893 0.888 0.112
#> SRR1643235 1 0.506 0.893 0.888 0.112
#> SRR1643236 1 0.506 0.893 0.888 0.112
#> SRR1643237 1 0.506 0.893 0.888 0.112
#> SRR1643238 1 0.506 0.893 0.888 0.112
#> SRR1643239 1 0.506 0.893 0.888 0.112
#> SRR1643240 1 0.506 0.893 0.888 0.112
#> SRR1643241 1 0.506 0.893 0.888 0.112
#> SRR1643242 1 0.506 0.893 0.888 0.112
#> SRR1643243 1 0.506 0.893 0.888 0.112
#> SRR1643245 1 0.506 0.893 0.888 0.112
#> SRR1643246 1 0.506 0.893 0.888 0.112
#> SRR1643247 1 0.506 0.893 0.888 0.112
#> SRR1643248 1 0.506 0.893 0.888 0.112
#> SRR1643249 1 0.506 0.893 0.888 0.112
#> SRR1643250 1 0.000 0.980 1.000 0.000
#> SRR1643251 1 0.000 0.980 1.000 0.000
#> SRR1643252 1 0.000 0.980 1.000 0.000
#> SRR1643253 1 0.000 0.980 1.000 0.000
#> SRR1643254 1 0.000 0.980 1.000 0.000
#> SRR1643255 1 0.000 0.980 1.000 0.000
#> SRR1643256 1 0.000 0.980 1.000 0.000
#> SRR1643257 1 0.000 0.980 1.000 0.000
#> SRR1643258 1 0.000 0.980 1.000 0.000
#> SRR1643259 1 0.000 0.980 1.000 0.000
#> SRR1643260 1 0.000 0.980 1.000 0.000
#> SRR1643261 1 0.000 0.980 1.000 0.000
#> SRR1643262 1 0.000 0.980 1.000 0.000
#> SRR1643263 1 0.000 0.980 1.000 0.000
#> SRR1643264 1 0.000 0.980 1.000 0.000
#> SRR1643266 1 0.000 0.980 1.000 0.000
#> SRR1643267 1 0.000 0.980 1.000 0.000
#> SRR1643268 1 0.000 0.980 1.000 0.000
#> SRR1643269 1 0.000 0.980 1.000 0.000
#> SRR1643270 1 0.000 0.980 1.000 0.000
#> SRR1643271 1 0.000 0.980 1.000 0.000
#> SRR1643272 1 0.000 0.980 1.000 0.000
#> SRR1643273 1 0.000 0.980 1.000 0.000
#> SRR1643274 1 0.000 0.980 1.000 0.000
#> SRR1643275 1 0.000 0.980 1.000 0.000
#> SRR1643276 1 0.000 0.980 1.000 0.000
#> SRR1643277 1 0.000 0.980 1.000 0.000
#> SRR1643278 1 0.000 0.980 1.000 0.000
#> SRR1643279 1 0.000 0.980 1.000 0.000
#> SRR1643280 1 0.000 0.980 1.000 0.000
#> SRR1643281 1 0.000 0.980 1.000 0.000
#> SRR1643282 1 0.000 0.980 1.000 0.000
#> SRR1643283 1 0.000 0.980 1.000 0.000
#> SRR1643284 1 0.000 0.980 1.000 0.000
#> SRR1643285 1 0.000 0.980 1.000 0.000
#> SRR1643286 1 0.000 0.980 1.000 0.000
#> SRR1643287 1 0.000 0.980 1.000 0.000
#> SRR1643288 1 0.000 0.980 1.000 0.000
#> SRR1643289 1 0.000 0.980 1.000 0.000
#> SRR1643290 1 0.000 0.980 1.000 0.000
#> SRR1643291 1 0.000 0.980 1.000 0.000
#> SRR1643292 1 0.000 0.980 1.000 0.000
#> SRR1643293 1 0.000 0.980 1.000 0.000
#> SRR1643294 1 0.000 0.980 1.000 0.000
#> SRR1643295 1 0.000 0.980 1.000 0.000
#> SRR1643296 1 0.000 0.980 1.000 0.000
#> SRR1643297 1 0.000 0.980 1.000 0.000
#> SRR1643298 1 0.000 0.980 1.000 0.000
#> SRR1643299 1 0.000 0.980 1.000 0.000
#> SRR1643300 1 0.000 0.980 1.000 0.000
#> SRR1643301 1 0.000 0.980 1.000 0.000
#> SRR1643302 1 0.000 0.980 1.000 0.000
#> SRR1643303 1 0.000 0.980 1.000 0.000
#> SRR1643304 1 0.000 0.980 1.000 0.000
#> SRR1643305 1 0.000 0.980 1.000 0.000
#> SRR1643306 1 0.000 0.980 1.000 0.000
#> SRR1643307 1 0.000 0.980 1.000 0.000
#> SRR1643308 1 0.000 0.980 1.000 0.000
#> SRR1643309 1 0.000 0.980 1.000 0.000
#> SRR1643310 1 0.000 0.980 1.000 0.000
#> SRR1643311 1 0.000 0.980 1.000 0.000
#> SRR1643312 1 0.000 0.980 1.000 0.000
#> SRR1643313 1 0.000 0.980 1.000 0.000
#> SRR1643314 1 0.000 0.980 1.000 0.000
#> SRR1643315 1 0.000 0.980 1.000 0.000
#> SRR1643316 1 0.000 0.980 1.000 0.000
#> SRR1643317 1 0.000 0.980 1.000 0.000
#> SRR1643318 1 0.000 0.980 1.000 0.000
#> SRR1643319 1 0.000 0.980 1.000 0.000
#> SRR1643320 1 0.000 0.980 1.000 0.000
#> SRR1643321 1 0.000 0.980 1.000 0.000
#> SRR1643322 1 0.000 0.980 1.000 0.000
#> SRR1643323 1 0.000 0.980 1.000 0.000
#> SRR1643324 1 0.000 0.980 1.000 0.000
#> SRR1643325 1 0.000 0.980 1.000 0.000
#> SRR1643326 1 0.000 0.980 1.000 0.000
#> SRR1643327 1 0.000 0.980 1.000 0.000
#> SRR1643328 1 0.000 0.980 1.000 0.000
#> SRR1643329 1 0.000 0.980 1.000 0.000
#> SRR1643330 1 0.000 0.980 1.000 0.000
#> SRR1643331 1 0.000 0.980 1.000 0.000
#> SRR1643332 1 0.000 0.980 1.000 0.000
#> SRR1643333 1 0.000 0.980 1.000 0.000
#> SRR1643334 1 0.000 0.980 1.000 0.000
#> SRR1643335 1 0.000 0.980 1.000 0.000
#> SRR1643336 1 0.000 0.980 1.000 0.000
#> SRR1643337 1 0.000 0.980 1.000 0.000
#> SRR1643338 1 0.000 0.980 1.000 0.000
#> SRR1643339 1 0.000 0.980 1.000 0.000
#> SRR1643340 1 0.000 0.980 1.000 0.000
#> SRR1643341 1 0.000 0.980 1.000 0.000
#> SRR1643342 1 0.000 0.980 1.000 0.000
#> SRR1643343 1 0.000 0.980 1.000 0.000
#> SRR1643344 1 0.000 0.980 1.000 0.000
#> SRR1643345 1 0.000 0.980 1.000 0.000
#> SRR1643346 1 0.000 0.980 1.000 0.000
#> SRR1643347 1 0.000 0.980 1.000 0.000
#> SRR1643348 1 0.000 0.980 1.000 0.000
#> SRR1643349 1 0.000 0.980 1.000 0.000
#> SRR1643350 1 0.000 0.980 1.000 0.000
#> SRR1643351 1 0.000 0.980 1.000 0.000
#> SRR1643352 1 0.000 0.980 1.000 0.000
#> SRR1643353 1 0.000 0.980 1.000 0.000
#> SRR1643354 1 0.000 0.980 1.000 0.000
#> SRR1643355 1 0.000 0.980 1.000 0.000
#> SRR1643356 1 0.000 0.980 1.000 0.000
#> SRR1643357 1 0.000 0.980 1.000 0.000
#> SRR1643358 1 0.000 0.980 1.000 0.000
#> SRR1643359 1 0.000 0.980 1.000 0.000
#> SRR1643360 1 0.000 0.980 1.000 0.000
#> SRR1643361 1 0.000 0.980 1.000 0.000
#> SRR1643362 1 0.000 0.980 1.000 0.000
#> SRR1643363 1 0.000 0.980 1.000 0.000
#> SRR1643364 1 0.000 0.980 1.000 0.000
#> SRR1643365 1 0.000 0.980 1.000 0.000
#> SRR1643366 1 0.000 0.980 1.000 0.000
#> SRR1643367 1 0.000 0.980 1.000 0.000
#> SRR1643368 1 0.000 0.980 1.000 0.000
#> SRR1643369 1 0.000 0.980 1.000 0.000
#> SRR1643370 1 0.000 0.980 1.000 0.000
#> SRR1643371 1 0.000 0.980 1.000 0.000
#> SRR1643372 1 0.000 0.980 1.000 0.000
#> SRR1643373 1 0.000 0.980 1.000 0.000
#> SRR1643374 1 0.000 0.980 1.000 0.000
#> SRR1643375 1 0.000 0.980 1.000 0.000
#> SRR1643376 1 0.000 0.980 1.000 0.000
#> SRR1643377 1 0.000 0.980 1.000 0.000
#> SRR1643378 1 0.000 0.980 1.000 0.000
#> SRR1643379 1 0.000 0.980 1.000 0.000
#> SRR1643380 1 0.000 0.980 1.000 0.000
#> SRR1643381 1 0.000 0.980 1.000 0.000
#> SRR1643382 1 0.000 0.980 1.000 0.000
#> SRR1643383 1 0.000 0.980 1.000 0.000
#> SRR1643384 1 0.000 0.980 1.000 0.000
#> SRR1643385 1 0.000 0.980 1.000 0.000
#> SRR1643386 1 0.000 0.980 1.000 0.000
#> SRR1643387 1 0.000 0.980 1.000 0.000
#> SRR1643388 1 0.000 0.980 1.000 0.000
#> SRR1643389 1 0.000 0.980 1.000 0.000
#> SRR1643390 1 0.000 0.980 1.000 0.000
#> SRR1643391 1 0.000 0.980 1.000 0.000
#> SRR1643392 1 0.000 0.980 1.000 0.000
#> SRR1643393 1 0.000 0.980 1.000 0.000
#> SRR1643394 1 0.000 0.980 1.000 0.000
#> SRR1643395 1 0.000 0.980 1.000 0.000
#> SRR1643396 1 0.000 0.980 1.000 0.000
#> SRR1643397 1 0.000 0.980 1.000 0.000
#> SRR1643398 1 0.000 0.980 1.000 0.000
#> SRR1643399 1 0.000 0.980 1.000 0.000
#> SRR1643400 1 0.000 0.980 1.000 0.000
#> SRR1643401 1 0.000 0.980 1.000 0.000
#> SRR1643402 1 0.000 0.980 1.000 0.000
#> SRR1643403 1 0.000 0.980 1.000 0.000
#> SRR1643404 1 0.000 0.980 1.000 0.000
#> SRR1643405 1 0.000 0.980 1.000 0.000
#> SRR1643406 1 0.000 0.980 1.000 0.000
#> SRR1643407 1 0.000 0.980 1.000 0.000
#> SRR1643408 1 0.000 0.980 1.000 0.000
#> SRR1643409 1 0.000 0.980 1.000 0.000
#> SRR1643410 1 0.000 0.980 1.000 0.000
#> SRR1643411 1 0.000 0.980 1.000 0.000
#> SRR1643412 1 0.000 0.980 1.000 0.000
#> SRR1643413 1 0.000 0.980 1.000 0.000
#> SRR1643414 1 0.000 0.980 1.000 0.000
#> SRR1643415 1 0.000 0.980 1.000 0.000
#> SRR1643416 1 0.000 0.980 1.000 0.000
#> SRR1643417 1 0.000 0.980 1.000 0.000
#> SRR1643418 1 0.000 0.980 1.000 0.000
#> SRR1643419 1 0.000 0.980 1.000 0.000
#> SRR1643420 1 0.000 0.980 1.000 0.000
#> SRR1643421 1 0.000 0.980 1.000 0.000
#> SRR1643422 1 0.000 0.980 1.000 0.000
#> SRR1643423 1 0.000 0.980 1.000 0.000
#> SRR1643424 1 0.000 0.980 1.000 0.000
#> SRR1643425 1 0.000 0.980 1.000 0.000
#> SRR1643426 1 0.000 0.980 1.000 0.000
#> SRR1643427 1 0.000 0.980 1.000 0.000
#> SRR1643428 1 0.000 0.980 1.000 0.000
#> SRR1643429 1 0.000 0.980 1.000 0.000
#> SRR1643430 1 0.000 0.980 1.000 0.000
#> SRR1643431 1 0.000 0.980 1.000 0.000
#> SRR1643432 1 0.000 0.980 1.000 0.000
#> SRR1643433 1 0.000 0.980 1.000 0.000
#> SRR1643434 1 0.000 0.980 1.000 0.000
#> SRR1643435 1 0.000 0.980 1.000 0.000
#> SRR1643436 1 0.000 0.980 1.000 0.000
#> SRR1643437 1 0.000 0.980 1.000 0.000
#> SRR1643438 1 0.000 0.980 1.000 0.000
#> SRR1643439 1 0.000 0.980 1.000 0.000
#> SRR1643440 1 0.000 0.980 1.000 0.000
#> SRR1643441 1 0.000 0.980 1.000 0.000
#> SRR1643442 1 0.000 0.980 1.000 0.000
#> SRR1643443 2 0.506 1.000 0.112 0.888
#> SRR1643444 2 0.506 1.000 0.112 0.888
#> SRR1643445 2 0.506 1.000 0.112 0.888
#> SRR1643446 2 0.506 1.000 0.112 0.888
#> SRR1643447 2 0.506 1.000 0.112 0.888
#> SRR1643448 2 0.506 1.000 0.112 0.888
#> SRR1643449 2 0.506 1.000 0.112 0.888
#> SRR1643450 2 0.506 1.000 0.112 0.888
#> SRR1643451 2 0.506 1.000 0.112 0.888
#> SRR1643452 2 0.506 1.000 0.112 0.888
#> SRR1643453 2 0.506 1.000 0.112 0.888
#> SRR1643454 2 0.506 1.000 0.112 0.888
#> SRR1643455 2 0.506 1.000 0.112 0.888
#> SRR1643456 2 0.506 1.000 0.112 0.888
#> SRR1643457 2 0.506 1.000 0.112 0.888
#> SRR1643458 2 0.506 1.000 0.112 0.888
#> SRR1643459 2 0.506 1.000 0.112 0.888
#> SRR1643460 2 0.506 1.000 0.112 0.888
#> SRR1643461 2 0.506 1.000 0.112 0.888
#> SRR1643462 2 0.506 1.000 0.112 0.888
#> SRR1643463 2 0.506 1.000 0.112 0.888
#> SRR1643464 2 0.506 1.000 0.112 0.888
#> SRR1643466 2 0.506 1.000 0.112 0.888
#> SRR1643467 2 0.506 1.000 0.112 0.888
#> SRR1643468 2 0.506 1.000 0.112 0.888
#> SRR1643469 2 0.506 1.000 0.112 0.888
#> SRR1643470 2 0.506 1.000 0.112 0.888
#> SRR1643471 2 0.506 1.000 0.112 0.888
#> SRR1643472 2 0.506 1.000 0.112 0.888
#> SRR1643473 2 0.506 1.000 0.112 0.888
#> SRR1643474 2 0.506 1.000 0.112 0.888
#> SRR1643475 2 0.506 1.000 0.112 0.888
#> SRR1643477 2 0.506 1.000 0.112 0.888
#> SRR1643478 2 0.506 1.000 0.112 0.888
#> SRR1643479 2 0.506 1.000 0.112 0.888
#> SRR1643480 2 0.506 1.000 0.112 0.888
#> SRR1643481 2 0.506 1.000 0.112 0.888
#> SRR1643482 2 0.506 1.000 0.112 0.888
#> SRR1643483 2 0.506 1.000 0.112 0.888
#> SRR1643484 2 0.506 1.000 0.112 0.888
#> SRR1643485 2 0.506 1.000 0.112 0.888
#> SRR1643486 2 0.506 1.000 0.112 0.888
#> SRR1643487 2 0.506 1.000 0.112 0.888
#> SRR1643488 2 0.506 1.000 0.112 0.888
#> SRR1643489 2 0.506 1.000 0.112 0.888
#> SRR1643490 2 0.506 1.000 0.112 0.888
#> SRR1643491 2 0.506 1.000 0.112 0.888
#> SRR1643492 2 0.506 1.000 0.112 0.888
#> SRR1643493 2 0.506 1.000 0.112 0.888
#> SRR1643494 2 0.506 1.000 0.112 0.888
#> SRR1643495 2 0.506 1.000 0.112 0.888
#> SRR1643496 2 0.506 1.000 0.112 0.888
#> SRR1643497 2 0.506 1.000 0.112 0.888
#> SRR1643498 2 0.506 1.000 0.112 0.888
#> SRR1643499 2 0.506 1.000 0.112 0.888
#> SRR1643500 2 0.506 1.000 0.112 0.888
#> SRR1643501 2 0.506 1.000 0.112 0.888
#> SRR1643502 2 0.506 1.000 0.112 0.888
#> SRR1643503 2 0.506 1.000 0.112 0.888
#> SRR1643504 2 0.506 1.000 0.112 0.888
#> SRR1643505 2 0.506 1.000 0.112 0.888
#> SRR1643506 2 0.506 1.000 0.112 0.888
#> SRR1643507 2 0.506 1.000 0.112 0.888
#> SRR1643508 2 0.506 1.000 0.112 0.888
#> SRR1643509 2 0.506 1.000 0.112 0.888
#> SRR1643510 2 0.506 1.000 0.112 0.888
#> SRR1643511 2 0.506 1.000 0.112 0.888
#> SRR1643512 2 0.506 1.000 0.112 0.888
#> SRR1643513 2 0.506 1.000 0.112 0.888
#> SRR1643531 2 0.506 1.000 0.112 0.888
#> SRR1643532 2 0.506 1.000 0.112 0.888
#> SRR1643533 2 0.506 1.000 0.112 0.888
#> SRR1643534 2 0.506 1.000 0.112 0.888
#> SRR1643535 2 0.506 1.000 0.112 0.888
#> SRR1643536 2 0.506 1.000 0.112 0.888
#> SRR1643537 2 0.506 1.000 0.112 0.888
#> SRR1643538 2 0.506 1.000 0.112 0.888
#> SRR1643539 2 0.506 1.000 0.112 0.888
#> SRR1643540 2 0.506 1.000 0.112 0.888
#> SRR1643541 2 0.506 1.000 0.112 0.888
#> SRR1643542 2 0.506 1.000 0.112 0.888
#> SRR1643543 2 0.506 1.000 0.112 0.888
#> SRR1643544 2 0.506 1.000 0.112 0.888
#> SRR1643514 2 0.506 1.000 0.112 0.888
#> SRR1643515 2 0.506 1.000 0.112 0.888
#> SRR1643516 2 0.506 1.000 0.112 0.888
#> SRR1643517 2 0.506 1.000 0.112 0.888
#> SRR1643518 2 0.506 1.000 0.112 0.888
#> SRR1643519 2 0.506 1.000 0.112 0.888
#> SRR1643520 2 0.506 1.000 0.112 0.888
#> SRR1643521 2 0.506 1.000 0.112 0.888
#> SRR1643522 2 0.506 1.000 0.112 0.888
#> SRR1643523 2 0.506 1.000 0.112 0.888
#> SRR1643524 2 0.506 1.000 0.112 0.888
#> SRR1643525 2 0.506 1.000 0.112 0.888
#> SRR1643526 2 0.506 1.000 0.112 0.888
#> SRR1643527 2 0.506 1.000 0.112 0.888
#> SRR1643528 2 0.506 1.000 0.112 0.888
#> SRR1643529 2 0.506 1.000 0.112 0.888
#> SRR1643530 2 0.506 1.000 0.112 0.888
#> SRR1643545 2 0.506 1.000 0.112 0.888
#> SRR1643546 2 0.506 1.000 0.112 0.888
#> SRR1643547 2 0.506 1.000 0.112 0.888
#> SRR1643548 2 0.506 1.000 0.112 0.888
#> SRR1643549 2 0.506 1.000 0.112 0.888
#> SRR1643550 2 0.506 1.000 0.112 0.888
#> SRR1643551 2 0.506 1.000 0.112 0.888
#> SRR1643552 2 0.506 1.000 0.112 0.888
#> SRR1643553 2 0.506 1.000 0.112 0.888
#> SRR1643554 2 0.506 1.000 0.112 0.888
#> SRR1643555 2 0.506 1.000 0.112 0.888
#> SRR1643556 2 0.506 1.000 0.112 0.888
#> SRR1643558 2 0.506 1.000 0.112 0.888
#> SRR1643559 2 0.506 1.000 0.112 0.888
#> SRR1643560 2 0.506 1.000 0.112 0.888
#> SRR1643561 2 0.506 1.000 0.112 0.888
#> SRR1643562 2 0.506 1.000 0.112 0.888
#> SRR1643563 2 0.506 1.000 0.112 0.888
#> SRR1643564 2 0.506 1.000 0.112 0.888
#> SRR1643565 2 0.506 1.000 0.112 0.888
#> SRR1643566 2 0.506 1.000 0.112 0.888
#> SRR1643567 2 0.506 1.000 0.112 0.888
#> SRR1643568 2 0.506 1.000 0.112 0.888
#> SRR1643569 2 0.506 1.000 0.112 0.888
#> SRR1643570 2 0.506 1.000 0.112 0.888
#> SRR1643571 2 0.506 1.000 0.112 0.888
#> SRR1643572 2 0.506 1.000 0.112 0.888
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.3686 0.845 0.860 0.000 0.140
#> SRR1643168 1 0.3686 0.845 0.860 0.000 0.140
#> SRR1643169 1 0.3686 0.845 0.860 0.000 0.140
#> SRR1643170 1 0.3686 0.845 0.860 0.000 0.140
#> SRR1643171 1 0.3686 0.845 0.860 0.000 0.140
#> SRR1643172 1 0.3686 0.845 0.860 0.000 0.140
#> SRR1643173 1 0.3686 0.845 0.860 0.000 0.140
#> SRR1643174 1 0.3686 0.845 0.860 0.000 0.140
#> SRR1643175 1 0.2711 0.897 0.912 0.000 0.088
#> SRR1643176 1 0.2711 0.897 0.912 0.000 0.088
#> SRR1643177 1 0.2711 0.897 0.912 0.000 0.088
#> SRR1643178 1 0.2711 0.897 0.912 0.000 0.088
#> SRR1643180 1 0.3686 0.845 0.860 0.000 0.140
#> SRR1643181 1 0.3686 0.845 0.860 0.000 0.140
#> SRR1643182 1 0.3686 0.845 0.860 0.000 0.140
#> SRR1643183 1 0.3686 0.845 0.860 0.000 0.140
#> SRR1643184 1 0.3686 0.845 0.860 0.000 0.140
#> SRR1643185 1 0.3686 0.845 0.860 0.000 0.140
#> SRR1643186 1 0.3686 0.845 0.860 0.000 0.140
#> SRR1643187 1 0.3038 0.875 0.896 0.000 0.104
#> SRR1643188 1 0.3038 0.875 0.896 0.000 0.104
#> SRR1643189 1 0.3038 0.875 0.896 0.000 0.104
#> SRR1643190 1 0.3038 0.875 0.896 0.000 0.104
#> SRR1643191 1 0.3686 0.845 0.860 0.000 0.140
#> SRR1643192 1 0.3686 0.845 0.860 0.000 0.140
#> SRR1643193 1 0.3038 0.875 0.896 0.000 0.104
#> SRR1643194 1 0.3038 0.875 0.896 0.000 0.104
#> SRR1643195 1 0.2448 0.868 0.924 0.000 0.076
#> SRR1643196 1 0.2448 0.868 0.924 0.000 0.076
#> SRR1643197 1 0.3340 0.865 0.880 0.000 0.120
#> SRR1643198 1 0.3340 0.865 0.880 0.000 0.120
#> SRR1643199 1 0.3686 0.845 0.860 0.000 0.140
#> SRR1643200 1 0.3686 0.845 0.860 0.000 0.140
#> SRR1643201 1 0.2711 0.860 0.912 0.000 0.088
#> SRR1643202 1 0.2711 0.860 0.912 0.000 0.088
#> SRR1643203 1 0.3116 0.872 0.892 0.000 0.108
#> SRR1643204 1 0.3116 0.872 0.892 0.000 0.108
#> SRR1643205 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643206 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643207 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643208 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643209 3 0.6373 0.998 0.408 0.004 0.588
#> SRR1643210 3 0.6373 0.998 0.408 0.004 0.588
#> SRR1643211 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643212 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643213 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643214 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643215 3 0.6373 0.998 0.408 0.004 0.588
#> SRR1643216 3 0.6373 0.998 0.408 0.004 0.588
#> SRR1643217 3 0.6373 0.998 0.408 0.004 0.588
#> SRR1643218 3 0.6373 0.998 0.408 0.004 0.588
#> SRR1643219 3 0.6373 0.998 0.408 0.004 0.588
#> SRR1643220 3 0.6373 0.998 0.408 0.004 0.588
#> SRR1643221 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643222 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643223 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643224 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643225 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643226 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643227 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643228 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643229 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643230 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643231 3 0.6373 0.997 0.408 0.004 0.588
#> SRR1643232 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643233 3 0.6540 0.996 0.408 0.008 0.584
#> SRR1643234 3 0.6540 0.996 0.408 0.008 0.584
#> SRR1643235 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643236 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643237 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643238 3 0.6373 0.998 0.408 0.004 0.588
#> SRR1643239 3 0.6373 0.998 0.408 0.004 0.588
#> SRR1643240 3 0.6373 0.998 0.408 0.004 0.588
#> SRR1643241 3 0.6373 0.998 0.408 0.004 0.588
#> SRR1643242 3 0.6540 0.996 0.408 0.008 0.584
#> SRR1643243 3 0.6540 0.996 0.408 0.008 0.584
#> SRR1643245 3 0.6540 0.996 0.408 0.008 0.584
#> SRR1643246 3 0.6540 0.996 0.408 0.008 0.584
#> SRR1643247 3 0.6540 0.996 0.408 0.008 0.584
#> SRR1643248 3 0.6154 0.998 0.408 0.000 0.592
#> SRR1643249 3 0.6540 0.996 0.408 0.008 0.584
#> SRR1643250 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643251 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643252 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643253 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643254 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643255 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643256 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643257 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643258 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643259 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643260 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643261 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643262 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643263 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643264 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643266 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643267 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643268 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643269 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643270 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643271 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643272 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643273 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643274 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643275 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643276 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643277 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643278 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643279 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643280 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643281 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643282 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643283 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643284 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643285 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643286 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643287 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643288 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643289 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643290 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643291 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643292 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643293 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643294 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643295 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643296 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643297 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643298 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643299 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643300 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643301 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643302 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643303 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643304 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643305 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643306 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643307 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643308 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643309 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643310 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643311 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643312 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643313 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643314 1 0.1643 0.919 0.956 0.000 0.044
#> SRR1643315 1 0.1643 0.919 0.956 0.000 0.044
#> SRR1643316 1 0.1643 0.919 0.956 0.000 0.044
#> SRR1643317 1 0.1643 0.919 0.956 0.000 0.044
#> SRR1643318 1 0.1643 0.919 0.956 0.000 0.044
#> SRR1643319 1 0.1643 0.919 0.956 0.000 0.044
#> SRR1643320 1 0.1643 0.919 0.956 0.000 0.044
#> SRR1643321 1 0.1643 0.919 0.956 0.000 0.044
#> SRR1643322 1 0.1643 0.919 0.956 0.000 0.044
#> SRR1643323 1 0.1643 0.919 0.956 0.000 0.044
#> SRR1643324 1 0.1643 0.919 0.956 0.000 0.044
#> SRR1643325 1 0.1643 0.919 0.956 0.000 0.044
#> SRR1643326 1 0.1643 0.919 0.956 0.000 0.044
#> SRR1643327 1 0.1643 0.919 0.956 0.000 0.044
#> SRR1643328 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643329 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643330 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643331 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643332 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643333 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643334 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643335 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643336 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643337 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643338 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643339 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643340 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643341 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643342 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643343 1 0.1643 0.920 0.956 0.000 0.044
#> SRR1643344 1 0.1643 0.920 0.956 0.000 0.044
#> SRR1643345 1 0.1643 0.920 0.956 0.000 0.044
#> SRR1643346 1 0.1643 0.920 0.956 0.000 0.044
#> SRR1643347 1 0.1643 0.920 0.956 0.000 0.044
#> SRR1643348 1 0.1643 0.920 0.956 0.000 0.044
#> SRR1643349 1 0.1643 0.920 0.956 0.000 0.044
#> SRR1643350 1 0.1643 0.920 0.956 0.000 0.044
#> SRR1643351 1 0.1643 0.920 0.956 0.000 0.044
#> SRR1643352 1 0.1643 0.920 0.956 0.000 0.044
#> SRR1643353 1 0.1643 0.920 0.956 0.000 0.044
#> SRR1643354 1 0.1643 0.920 0.956 0.000 0.044
#> SRR1643355 1 0.1643 0.920 0.956 0.000 0.044
#> SRR1643356 1 0.1643 0.920 0.956 0.000 0.044
#> SRR1643357 1 0.1643 0.920 0.956 0.000 0.044
#> SRR1643358 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643359 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643360 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643361 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643362 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643363 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643364 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643365 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643366 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643367 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643368 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643369 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643370 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643371 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643372 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643373 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643374 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643375 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643376 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643377 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643378 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643379 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643380 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643381 1 0.0237 0.927 0.996 0.000 0.004
#> SRR1643382 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643383 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643384 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643385 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643386 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643387 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643388 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643389 1 0.0000 0.930 1.000 0.000 0.000
#> SRR1643390 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643391 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643392 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643393 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643394 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643395 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643396 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643397 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643398 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643399 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643400 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643401 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643402 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643403 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643404 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643405 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643406 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643407 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643408 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643409 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643410 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643411 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643412 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643413 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643414 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643415 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643416 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643417 1 0.2625 0.896 0.916 0.000 0.084
#> SRR1643418 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643419 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643420 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643421 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643422 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643423 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643424 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643425 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643426 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643427 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643428 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643429 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643430 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643431 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643432 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643433 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643434 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643435 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643436 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643437 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643438 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643439 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643440 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643441 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643442 1 0.1753 0.887 0.952 0.000 0.048
#> SRR1643443 2 0.4808 0.913 0.008 0.804 0.188
#> SRR1643444 2 0.4808 0.913 0.008 0.804 0.188
#> SRR1643445 2 0.4808 0.913 0.008 0.804 0.188
#> SRR1643446 2 0.4808 0.913 0.008 0.804 0.188
#> SRR1643447 2 0.4808 0.913 0.008 0.804 0.188
#> SRR1643448 2 0.4808 0.913 0.008 0.804 0.188
#> SRR1643449 2 0.4808 0.913 0.008 0.804 0.188
#> SRR1643450 2 0.4808 0.913 0.008 0.804 0.188
#> SRR1643451 2 0.4808 0.913 0.008 0.804 0.188
#> SRR1643452 2 0.4808 0.913 0.008 0.804 0.188
#> SRR1643453 2 0.4808 0.913 0.008 0.804 0.188
#> SRR1643454 2 0.4808 0.913 0.008 0.804 0.188
#> SRR1643455 2 0.4808 0.913 0.008 0.804 0.188
#> SRR1643456 2 0.1585 0.936 0.008 0.964 0.028
#> SRR1643457 2 0.1585 0.936 0.008 0.964 0.028
#> SRR1643458 2 0.1585 0.936 0.008 0.964 0.028
#> SRR1643459 2 0.1585 0.936 0.008 0.964 0.028
#> SRR1643460 2 0.1585 0.936 0.008 0.964 0.028
#> SRR1643461 2 0.1585 0.936 0.008 0.964 0.028
#> SRR1643462 2 0.1585 0.936 0.008 0.964 0.028
#> SRR1643463 2 0.1585 0.936 0.008 0.964 0.028
#> SRR1643464 2 0.1585 0.936 0.008 0.964 0.028
#> SRR1643466 2 0.1585 0.936 0.008 0.964 0.028
#> SRR1643467 2 0.1585 0.936 0.008 0.964 0.028
#> SRR1643468 2 0.1950 0.936 0.008 0.952 0.040
#> SRR1643469 2 0.1950 0.936 0.008 0.952 0.040
#> SRR1643470 2 0.1950 0.936 0.008 0.952 0.040
#> SRR1643471 2 0.1950 0.936 0.008 0.952 0.040
#> SRR1643472 2 0.1950 0.936 0.008 0.952 0.040
#> SRR1643473 2 0.1950 0.936 0.008 0.952 0.040
#> SRR1643474 2 0.1950 0.936 0.008 0.952 0.040
#> SRR1643475 2 0.1950 0.936 0.008 0.952 0.040
#> SRR1643477 2 0.1950 0.936 0.008 0.952 0.040
#> SRR1643478 2 0.1950 0.936 0.008 0.952 0.040
#> SRR1643479 2 0.1950 0.936 0.008 0.952 0.040
#> SRR1643480 2 0.1950 0.936 0.008 0.952 0.040
#> SRR1643481 2 0.1832 0.935 0.008 0.956 0.036
#> SRR1643482 2 0.1832 0.935 0.008 0.956 0.036
#> SRR1643483 2 0.1832 0.935 0.008 0.956 0.036
#> SRR1643484 2 0.1832 0.935 0.008 0.956 0.036
#> SRR1643485 2 0.1832 0.935 0.008 0.956 0.036
#> SRR1643486 2 0.1832 0.935 0.008 0.956 0.036
#> SRR1643487 2 0.1832 0.935 0.008 0.956 0.036
#> SRR1643488 2 0.1832 0.935 0.008 0.956 0.036
#> SRR1643489 2 0.1832 0.935 0.008 0.956 0.036
#> SRR1643490 2 0.1832 0.935 0.008 0.956 0.036
#> SRR1643491 2 0.1832 0.935 0.008 0.956 0.036
#> SRR1643492 2 0.1832 0.935 0.008 0.956 0.036
#> SRR1643493 2 0.1832 0.935 0.008 0.956 0.036
#> SRR1643494 2 0.1832 0.935 0.008 0.956 0.036
#> SRR1643495 2 0.1832 0.935 0.008 0.956 0.036
#> SRR1643496 2 0.1832 0.935 0.008 0.956 0.036
#> SRR1643497 2 0.2584 0.932 0.008 0.928 0.064
#> SRR1643498 2 0.2584 0.932 0.008 0.928 0.064
#> SRR1643499 2 0.2584 0.932 0.008 0.928 0.064
#> SRR1643500 2 0.2584 0.932 0.008 0.928 0.064
#> SRR1643501 2 0.2584 0.932 0.008 0.928 0.064
#> SRR1643502 2 0.2584 0.932 0.008 0.928 0.064
#> SRR1643503 2 0.2584 0.932 0.008 0.928 0.064
#> SRR1643504 2 0.2584 0.932 0.008 0.928 0.064
#> SRR1643505 2 0.2774 0.930 0.008 0.920 0.072
#> SRR1643506 2 0.2584 0.932 0.008 0.928 0.064
#> SRR1643507 2 0.2584 0.932 0.008 0.928 0.064
#> SRR1643508 2 0.2584 0.932 0.008 0.928 0.064
#> SRR1643509 2 0.2584 0.932 0.008 0.928 0.064
#> SRR1643510 2 0.2584 0.932 0.008 0.928 0.064
#> SRR1643511 2 0.2584 0.932 0.008 0.928 0.064
#> SRR1643512 2 0.2584 0.932 0.008 0.928 0.064
#> SRR1643513 2 0.2584 0.932 0.008 0.928 0.064
#> SRR1643531 2 0.4353 0.921 0.008 0.836 0.156
#> SRR1643532 2 0.4353 0.921 0.008 0.836 0.156
#> SRR1643533 2 0.4353 0.921 0.008 0.836 0.156
#> SRR1643534 2 0.4353 0.921 0.008 0.836 0.156
#> SRR1643535 2 0.4353 0.921 0.008 0.836 0.156
#> SRR1643536 2 0.4353 0.921 0.008 0.836 0.156
#> SRR1643537 2 0.4353 0.921 0.008 0.836 0.156
#> SRR1643538 2 0.4353 0.921 0.008 0.836 0.156
#> SRR1643539 2 0.4353 0.921 0.008 0.836 0.156
#> SRR1643540 2 0.4353 0.921 0.008 0.836 0.156
#> SRR1643541 2 0.4353 0.921 0.008 0.836 0.156
#> SRR1643542 2 0.4353 0.921 0.008 0.836 0.156
#> SRR1643543 2 0.4353 0.921 0.008 0.836 0.156
#> SRR1643544 2 0.4353 0.921 0.008 0.836 0.156
#> SRR1643514 2 0.3826 0.929 0.008 0.868 0.124
#> SRR1643515 2 0.3826 0.929 0.008 0.868 0.124
#> SRR1643516 2 0.3826 0.929 0.008 0.868 0.124
#> SRR1643517 2 0.3826 0.929 0.008 0.868 0.124
#> SRR1643518 2 0.3826 0.929 0.008 0.868 0.124
#> SRR1643519 2 0.3826 0.929 0.008 0.868 0.124
#> SRR1643520 2 0.3826 0.929 0.008 0.868 0.124
#> SRR1643521 2 0.3826 0.929 0.008 0.868 0.124
#> SRR1643522 2 0.3826 0.929 0.008 0.868 0.124
#> SRR1643523 2 0.3826 0.929 0.008 0.868 0.124
#> SRR1643524 2 0.3826 0.929 0.008 0.868 0.124
#> SRR1643525 2 0.3826 0.929 0.008 0.868 0.124
#> SRR1643526 2 0.3826 0.929 0.008 0.868 0.124
#> SRR1643527 2 0.3826 0.929 0.008 0.868 0.124
#> SRR1643528 2 0.3826 0.929 0.008 0.868 0.124
#> SRR1643529 2 0.3826 0.929 0.008 0.868 0.124
#> SRR1643530 2 0.3826 0.929 0.008 0.868 0.124
#> SRR1643545 2 0.2063 0.937 0.008 0.948 0.044
#> SRR1643546 2 0.2063 0.937 0.008 0.948 0.044
#> SRR1643547 2 0.2063 0.937 0.008 0.948 0.044
#> SRR1643548 2 0.2063 0.937 0.008 0.948 0.044
#> SRR1643549 2 0.2063 0.937 0.008 0.948 0.044
#> SRR1643550 2 0.2063 0.937 0.008 0.948 0.044
#> SRR1643551 2 0.2063 0.937 0.008 0.948 0.044
#> SRR1643552 2 0.2063 0.937 0.008 0.948 0.044
#> SRR1643553 2 0.2063 0.937 0.008 0.948 0.044
#> SRR1643554 2 0.2063 0.937 0.008 0.948 0.044
#> SRR1643555 2 0.2063 0.937 0.008 0.948 0.044
#> SRR1643556 2 0.2063 0.937 0.008 0.948 0.044
#> SRR1643558 2 0.2063 0.937 0.008 0.948 0.044
#> SRR1643559 2 0.3755 0.929 0.008 0.872 0.120
#> SRR1643560 2 0.3755 0.929 0.008 0.872 0.120
#> SRR1643561 2 0.3755 0.929 0.008 0.872 0.120
#> SRR1643562 2 0.3755 0.929 0.008 0.872 0.120
#> SRR1643563 2 0.3755 0.929 0.008 0.872 0.120
#> SRR1643564 2 0.3755 0.929 0.008 0.872 0.120
#> SRR1643565 2 0.3755 0.929 0.008 0.872 0.120
#> SRR1643566 2 0.3755 0.929 0.008 0.872 0.120
#> SRR1643567 2 0.3755 0.929 0.008 0.872 0.120
#> SRR1643568 2 0.3755 0.929 0.008 0.872 0.120
#> SRR1643569 2 0.3755 0.929 0.008 0.872 0.120
#> SRR1643570 2 0.3755 0.929 0.008 0.872 0.120
#> SRR1643571 2 0.3755 0.929 0.008 0.872 0.120
#> SRR1643572 2 0.3755 0.929 0.008 0.872 0.120
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.531 0.631 0.740 0.000 0.084 0.176
#> SRR1643168 1 0.531 0.631 0.740 0.000 0.084 0.176
#> SRR1643169 1 0.531 0.631 0.740 0.000 0.084 0.176
#> SRR1643170 1 0.531 0.631 0.740 0.000 0.084 0.176
#> SRR1643171 1 0.531 0.631 0.740 0.000 0.084 0.176
#> SRR1643172 1 0.531 0.631 0.740 0.000 0.084 0.176
#> SRR1643173 1 0.531 0.631 0.740 0.000 0.084 0.176
#> SRR1643174 1 0.531 0.631 0.740 0.000 0.084 0.176
#> SRR1643175 1 0.461 0.676 0.792 0.000 0.064 0.144
#> SRR1643176 1 0.461 0.676 0.792 0.000 0.064 0.144
#> SRR1643177 1 0.461 0.676 0.792 0.000 0.064 0.144
#> SRR1643178 1 0.461 0.676 0.792 0.000 0.064 0.144
#> SRR1643180 1 0.531 0.631 0.740 0.000 0.084 0.176
#> SRR1643181 1 0.531 0.631 0.740 0.000 0.084 0.176
#> SRR1643182 1 0.531 0.631 0.740 0.000 0.084 0.176
#> SRR1643183 1 0.531 0.631 0.740 0.000 0.084 0.176
#> SRR1643184 1 0.531 0.631 0.740 0.000 0.084 0.176
#> SRR1643185 1 0.531 0.631 0.740 0.000 0.084 0.176
#> SRR1643186 1 0.531 0.631 0.740 0.000 0.084 0.176
#> SRR1643187 1 0.451 0.664 0.784 0.000 0.040 0.176
#> SRR1643188 1 0.451 0.664 0.784 0.000 0.040 0.176
#> SRR1643189 1 0.451 0.664 0.784 0.000 0.040 0.176
#> SRR1643190 1 0.451 0.664 0.784 0.000 0.040 0.176
#> SRR1643191 1 0.531 0.631 0.740 0.000 0.084 0.176
#> SRR1643192 1 0.531 0.631 0.740 0.000 0.084 0.176
#> SRR1643193 1 0.451 0.664 0.784 0.000 0.040 0.176
#> SRR1643194 1 0.451 0.664 0.784 0.000 0.040 0.176
#> SRR1643195 1 0.513 0.697 0.692 0.000 0.028 0.280
#> SRR1643196 1 0.513 0.697 0.692 0.000 0.028 0.280
#> SRR1643197 1 0.501 0.651 0.764 0.000 0.076 0.160
#> SRR1643198 1 0.501 0.651 0.764 0.000 0.076 0.160
#> SRR1643199 1 0.531 0.631 0.740 0.000 0.084 0.176
#> SRR1643200 1 0.531 0.631 0.740 0.000 0.084 0.176
#> SRR1643201 1 0.424 0.668 0.796 0.000 0.028 0.176
#> SRR1643202 1 0.424 0.668 0.796 0.000 0.028 0.176
#> SRR1643203 1 0.483 0.654 0.768 0.000 0.056 0.176
#> SRR1643204 1 0.483 0.654 0.768 0.000 0.056 0.176
#> SRR1643205 3 0.395 0.988 0.216 0.000 0.780 0.004
#> SRR1643206 3 0.395 0.988 0.216 0.000 0.780 0.004
#> SRR1643207 3 0.395 0.988 0.216 0.000 0.780 0.004
#> SRR1643208 3 0.395 0.988 0.216 0.000 0.780 0.004
#> SRR1643209 3 0.464 0.986 0.216 0.000 0.756 0.028
#> SRR1643210 3 0.464 0.986 0.216 0.000 0.756 0.028
#> SRR1643211 3 0.376 0.989 0.216 0.000 0.784 0.000
#> SRR1643212 3 0.376 0.989 0.216 0.000 0.784 0.000
#> SRR1643213 3 0.376 0.989 0.216 0.000 0.784 0.000
#> SRR1643214 3 0.376 0.989 0.216 0.000 0.784 0.000
#> SRR1643215 3 0.464 0.986 0.216 0.000 0.756 0.028
#> SRR1643216 3 0.464 0.986 0.216 0.000 0.756 0.028
#> SRR1643217 3 0.464 0.986 0.216 0.000 0.756 0.028
#> SRR1643218 3 0.464 0.986 0.216 0.000 0.756 0.028
#> SRR1643219 3 0.464 0.986 0.216 0.000 0.756 0.028
#> SRR1643220 3 0.464 0.986 0.216 0.000 0.756 0.028
#> SRR1643221 3 0.409 0.988 0.216 0.000 0.776 0.008
#> SRR1643222 3 0.409 0.988 0.216 0.000 0.776 0.008
#> SRR1643223 3 0.395 0.988 0.216 0.000 0.780 0.004
#> SRR1643224 3 0.395 0.988 0.216 0.000 0.780 0.004
#> SRR1643225 3 0.395 0.988 0.216 0.000 0.780 0.004
#> SRR1643226 3 0.395 0.988 0.216 0.000 0.780 0.004
#> SRR1643227 3 0.395 0.988 0.216 0.000 0.780 0.004
#> SRR1643228 3 0.395 0.988 0.216 0.000 0.780 0.004
#> SRR1643229 3 0.395 0.988 0.216 0.000 0.780 0.004
#> SRR1643230 3 0.395 0.988 0.216 0.000 0.780 0.004
#> SRR1643231 3 0.454 0.987 0.216 0.000 0.760 0.024
#> SRR1643232 3 0.395 0.988 0.216 0.000 0.780 0.004
#> SRR1643233 3 0.490 0.982 0.216 0.000 0.744 0.040
#> SRR1643234 3 0.490 0.982 0.216 0.000 0.744 0.040
#> SRR1643235 3 0.395 0.988 0.216 0.000 0.780 0.004
#> SRR1643236 3 0.395 0.988 0.216 0.000 0.780 0.004
#> SRR1643237 3 0.395 0.988 0.216 0.000 0.780 0.004
#> SRR1643238 3 0.433 0.988 0.216 0.000 0.768 0.016
#> SRR1643239 3 0.433 0.988 0.216 0.000 0.768 0.016
#> SRR1643240 3 0.433 0.988 0.216 0.000 0.768 0.016
#> SRR1643241 3 0.433 0.988 0.216 0.000 0.768 0.016
#> SRR1643242 3 0.490 0.982 0.216 0.000 0.744 0.040
#> SRR1643243 3 0.482 0.983 0.216 0.000 0.748 0.036
#> SRR1643245 3 0.482 0.983 0.216 0.000 0.748 0.036
#> SRR1643246 3 0.482 0.983 0.216 0.000 0.748 0.036
#> SRR1643247 3 0.482 0.983 0.216 0.000 0.748 0.036
#> SRR1643248 3 0.421 0.988 0.216 0.000 0.772 0.012
#> SRR1643249 3 0.629 0.891 0.236 0.000 0.648 0.116
#> SRR1643250 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643251 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643252 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643253 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643254 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643255 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643256 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643257 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643258 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643259 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643260 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643261 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643262 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643263 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643264 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643266 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643267 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643268 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643269 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643270 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643271 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643272 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643273 1 0.234 0.774 0.900 0.000 0.000 0.100
#> SRR1643274 1 0.234 0.774 0.900 0.000 0.000 0.100
#> SRR1643275 1 0.234 0.774 0.900 0.000 0.000 0.100
#> SRR1643276 1 0.234 0.774 0.900 0.000 0.000 0.100
#> SRR1643277 1 0.234 0.774 0.900 0.000 0.000 0.100
#> SRR1643278 1 0.234 0.774 0.900 0.000 0.000 0.100
#> SRR1643279 1 0.234 0.774 0.900 0.000 0.000 0.100
#> SRR1643280 1 0.234 0.774 0.900 0.000 0.000 0.100
#> SRR1643281 1 0.234 0.774 0.900 0.000 0.000 0.100
#> SRR1643282 1 0.234 0.774 0.900 0.000 0.000 0.100
#> SRR1643283 1 0.234 0.774 0.900 0.000 0.000 0.100
#> SRR1643284 1 0.234 0.774 0.900 0.000 0.000 0.100
#> SRR1643285 1 0.234 0.774 0.900 0.000 0.000 0.100
#> SRR1643286 1 0.234 0.774 0.900 0.000 0.000 0.100
#> SRR1643287 1 0.430 0.735 0.752 0.000 0.008 0.240
#> SRR1643288 1 0.430 0.735 0.752 0.000 0.008 0.240
#> SRR1643289 1 0.430 0.735 0.752 0.000 0.008 0.240
#> SRR1643290 1 0.430 0.735 0.752 0.000 0.008 0.240
#> SRR1643291 1 0.430 0.735 0.752 0.000 0.008 0.240
#> SRR1643292 1 0.430 0.735 0.752 0.000 0.008 0.240
#> SRR1643293 1 0.430 0.735 0.752 0.000 0.008 0.240
#> SRR1643294 1 0.430 0.735 0.752 0.000 0.008 0.240
#> SRR1643295 1 0.430 0.735 0.752 0.000 0.008 0.240
#> SRR1643296 1 0.430 0.735 0.752 0.000 0.008 0.240
#> SRR1643297 1 0.430 0.735 0.752 0.000 0.008 0.240
#> SRR1643298 1 0.430 0.735 0.752 0.000 0.008 0.240
#> SRR1643299 1 0.430 0.735 0.752 0.000 0.008 0.240
#> SRR1643300 1 0.430 0.735 0.752 0.000 0.008 0.240
#> SRR1643301 1 0.215 0.775 0.912 0.000 0.000 0.088
#> SRR1643302 1 0.215 0.775 0.912 0.000 0.000 0.088
#> SRR1643303 1 0.215 0.775 0.912 0.000 0.000 0.088
#> SRR1643304 1 0.215 0.775 0.912 0.000 0.000 0.088
#> SRR1643305 1 0.215 0.775 0.912 0.000 0.000 0.088
#> SRR1643306 1 0.215 0.775 0.912 0.000 0.000 0.088
#> SRR1643307 1 0.215 0.775 0.912 0.000 0.000 0.088
#> SRR1643308 1 0.215 0.775 0.912 0.000 0.000 0.088
#> SRR1643309 1 0.215 0.775 0.912 0.000 0.000 0.088
#> SRR1643310 1 0.215 0.775 0.912 0.000 0.000 0.088
#> SRR1643311 1 0.215 0.775 0.912 0.000 0.000 0.088
#> SRR1643312 1 0.215 0.775 0.912 0.000 0.000 0.088
#> SRR1643313 1 0.215 0.775 0.912 0.000 0.000 0.088
#> SRR1643314 1 0.236 0.745 0.920 0.000 0.056 0.024
#> SRR1643315 1 0.236 0.745 0.920 0.000 0.056 0.024
#> SRR1643316 1 0.236 0.745 0.920 0.000 0.056 0.024
#> SRR1643317 1 0.236 0.745 0.920 0.000 0.056 0.024
#> SRR1643318 1 0.236 0.745 0.920 0.000 0.056 0.024
#> SRR1643319 1 0.220 0.749 0.928 0.000 0.048 0.024
#> SRR1643320 1 0.236 0.745 0.920 0.000 0.056 0.024
#> SRR1643321 1 0.236 0.745 0.920 0.000 0.056 0.024
#> SRR1643322 1 0.236 0.745 0.920 0.000 0.056 0.024
#> SRR1643323 1 0.236 0.745 0.920 0.000 0.056 0.024
#> SRR1643324 1 0.236 0.745 0.920 0.000 0.056 0.024
#> SRR1643325 1 0.236 0.745 0.920 0.000 0.056 0.024
#> SRR1643326 1 0.236 0.745 0.920 0.000 0.056 0.024
#> SRR1643327 1 0.236 0.745 0.920 0.000 0.056 0.024
#> SRR1643328 1 0.390 0.711 0.844 0.000 0.076 0.080
#> SRR1643329 1 0.390 0.711 0.844 0.000 0.076 0.080
#> SRR1643330 1 0.390 0.711 0.844 0.000 0.076 0.080
#> SRR1643331 1 0.390 0.711 0.844 0.000 0.076 0.080
#> SRR1643332 1 0.390 0.711 0.844 0.000 0.076 0.080
#> SRR1643333 1 0.390 0.711 0.844 0.000 0.076 0.080
#> SRR1643334 1 0.397 0.709 0.840 0.000 0.076 0.084
#> SRR1643335 1 0.390 0.711 0.844 0.000 0.076 0.080
#> SRR1643336 1 0.390 0.711 0.844 0.000 0.076 0.080
#> SRR1643337 1 0.390 0.711 0.844 0.000 0.076 0.080
#> SRR1643338 1 0.390 0.711 0.844 0.000 0.076 0.080
#> SRR1643339 1 0.390 0.711 0.844 0.000 0.076 0.080
#> SRR1643340 1 0.390 0.711 0.844 0.000 0.076 0.080
#> SRR1643341 1 0.390 0.711 0.844 0.000 0.076 0.080
#> SRR1643342 1 0.390 0.711 0.844 0.000 0.076 0.080
#> SRR1643343 1 0.316 0.752 0.884 0.000 0.068 0.048
#> SRR1643344 1 0.316 0.752 0.884 0.000 0.068 0.048
#> SRR1643345 1 0.316 0.752 0.884 0.000 0.068 0.048
#> SRR1643346 1 0.316 0.752 0.884 0.000 0.068 0.048
#> SRR1643347 1 0.316 0.752 0.884 0.000 0.068 0.048
#> SRR1643348 1 0.316 0.752 0.884 0.000 0.068 0.048
#> SRR1643349 1 0.316 0.752 0.884 0.000 0.068 0.048
#> SRR1643350 1 0.316 0.752 0.884 0.000 0.068 0.048
#> SRR1643351 1 0.316 0.752 0.884 0.000 0.068 0.048
#> SRR1643352 1 0.316 0.752 0.884 0.000 0.068 0.048
#> SRR1643353 1 0.316 0.752 0.884 0.000 0.068 0.048
#> SRR1643354 1 0.316 0.752 0.884 0.000 0.068 0.048
#> SRR1643355 1 0.316 0.752 0.884 0.000 0.068 0.048
#> SRR1643356 1 0.316 0.752 0.884 0.000 0.068 0.048
#> SRR1643357 1 0.316 0.752 0.884 0.000 0.068 0.048
#> SRR1643358 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643359 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643360 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643361 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643362 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643363 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643364 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643365 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643366 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643367 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643368 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643369 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643370 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643371 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643372 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643373 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643374 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643375 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643376 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643377 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643378 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643379 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643380 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643381 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643382 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643383 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643384 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643385 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643386 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643387 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643388 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643389 1 0.371 0.755 0.804 0.000 0.004 0.192
#> SRR1643390 1 0.369 0.718 0.856 0.000 0.076 0.068
#> SRR1643391 1 0.369 0.718 0.856 0.000 0.076 0.068
#> SRR1643392 1 0.369 0.718 0.856 0.000 0.076 0.068
#> SRR1643393 1 0.369 0.718 0.856 0.000 0.076 0.068
#> SRR1643394 1 0.369 0.718 0.856 0.000 0.076 0.068
#> SRR1643395 1 0.369 0.718 0.856 0.000 0.076 0.068
#> SRR1643396 1 0.369 0.718 0.856 0.000 0.076 0.068
#> SRR1643397 1 0.369 0.718 0.856 0.000 0.076 0.068
#> SRR1643398 1 0.369 0.718 0.856 0.000 0.076 0.068
#> SRR1643399 1 0.369 0.718 0.856 0.000 0.076 0.068
#> SRR1643400 1 0.369 0.718 0.856 0.000 0.076 0.068
#> SRR1643401 1 0.369 0.718 0.856 0.000 0.076 0.068
#> SRR1643402 1 0.369 0.718 0.856 0.000 0.076 0.068
#> SRR1643403 1 0.369 0.718 0.856 0.000 0.076 0.068
#> SRR1643404 1 0.369 0.718 0.856 0.000 0.076 0.068
#> SRR1643405 1 0.383 0.716 0.848 0.000 0.076 0.076
#> SRR1643406 1 0.383 0.716 0.848 0.000 0.076 0.076
#> SRR1643407 1 0.383 0.716 0.848 0.000 0.076 0.076
#> SRR1643408 1 0.383 0.716 0.848 0.000 0.076 0.076
#> SRR1643409 1 0.383 0.716 0.848 0.000 0.076 0.076
#> SRR1643410 1 0.383 0.716 0.848 0.000 0.076 0.076
#> SRR1643411 1 0.383 0.716 0.848 0.000 0.076 0.076
#> SRR1643412 1 0.383 0.716 0.848 0.000 0.076 0.076
#> SRR1643413 1 0.383 0.716 0.848 0.000 0.076 0.076
#> SRR1643414 1 0.383 0.716 0.848 0.000 0.076 0.076
#> SRR1643415 1 0.383 0.716 0.848 0.000 0.076 0.076
#> SRR1643416 1 0.383 0.716 0.848 0.000 0.076 0.076
#> SRR1643417 1 0.383 0.716 0.848 0.000 0.076 0.076
#> SRR1643418 1 0.525 0.644 0.660 0.000 0.024 0.316
#> SRR1643419 1 0.525 0.644 0.660 0.000 0.024 0.316
#> SRR1643420 1 0.525 0.644 0.660 0.000 0.024 0.316
#> SRR1643421 1 0.525 0.644 0.660 0.000 0.024 0.316
#> SRR1643422 1 0.525 0.644 0.660 0.000 0.024 0.316
#> SRR1643423 1 0.525 0.644 0.660 0.000 0.024 0.316
#> SRR1643424 1 0.525 0.644 0.660 0.000 0.024 0.316
#> SRR1643425 1 0.525 0.644 0.660 0.000 0.024 0.316
#> SRR1643426 1 0.525 0.644 0.660 0.000 0.024 0.316
#> SRR1643427 1 0.525 0.644 0.660 0.000 0.024 0.316
#> SRR1643428 1 0.525 0.644 0.660 0.000 0.024 0.316
#> SRR1643429 1 0.525 0.644 0.660 0.000 0.024 0.316
#> SRR1643430 1 0.523 0.646 0.664 0.000 0.024 0.312
#> SRR1643431 1 0.523 0.646 0.664 0.000 0.024 0.312
#> SRR1643432 1 0.523 0.646 0.664 0.000 0.024 0.312
#> SRR1643433 1 0.523 0.646 0.664 0.000 0.024 0.312
#> SRR1643434 1 0.523 0.646 0.664 0.000 0.024 0.312
#> SRR1643435 1 0.523 0.646 0.664 0.000 0.024 0.312
#> SRR1643436 1 0.523 0.646 0.664 0.000 0.024 0.312
#> SRR1643437 1 0.523 0.646 0.664 0.000 0.024 0.312
#> SRR1643438 1 0.523 0.646 0.664 0.000 0.024 0.312
#> SRR1643439 1 0.523 0.646 0.664 0.000 0.024 0.312
#> SRR1643440 1 0.523 0.646 0.664 0.000 0.024 0.312
#> SRR1643441 1 0.523 0.646 0.664 0.000 0.024 0.312
#> SRR1643442 1 0.523 0.646 0.664 0.000 0.024 0.312
#> SRR1643443 2 0.449 0.806 0.000 0.808 0.092 0.100
#> SRR1643444 2 0.449 0.806 0.000 0.808 0.092 0.100
#> SRR1643445 2 0.449 0.806 0.000 0.808 0.092 0.100
#> SRR1643446 2 0.449 0.806 0.000 0.808 0.092 0.100
#> SRR1643447 2 0.449 0.806 0.000 0.808 0.092 0.100
#> SRR1643448 2 0.449 0.806 0.000 0.808 0.092 0.100
#> SRR1643449 2 0.449 0.806 0.000 0.808 0.092 0.100
#> SRR1643450 2 0.449 0.806 0.000 0.808 0.092 0.100
#> SRR1643451 2 0.449 0.806 0.000 0.808 0.092 0.100
#> SRR1643452 2 0.449 0.806 0.000 0.808 0.092 0.100
#> SRR1643453 2 0.449 0.806 0.000 0.808 0.092 0.100
#> SRR1643454 2 0.449 0.806 0.000 0.808 0.092 0.100
#> SRR1643455 2 0.449 0.806 0.000 0.808 0.092 0.100
#> SRR1643456 2 0.407 0.858 0.000 0.748 0.000 0.252
#> SRR1643457 2 0.407 0.858 0.000 0.748 0.000 0.252
#> SRR1643458 2 0.407 0.858 0.000 0.748 0.000 0.252
#> SRR1643459 2 0.407 0.858 0.000 0.748 0.000 0.252
#> SRR1643460 2 0.407 0.858 0.000 0.748 0.000 0.252
#> SRR1643461 2 0.407 0.858 0.000 0.748 0.000 0.252
#> SRR1643462 2 0.407 0.858 0.000 0.748 0.000 0.252
#> SRR1643463 2 0.407 0.858 0.000 0.748 0.000 0.252
#> SRR1643464 2 0.407 0.858 0.000 0.748 0.000 0.252
#> SRR1643466 2 0.407 0.858 0.000 0.748 0.000 0.252
#> SRR1643467 2 0.407 0.858 0.000 0.748 0.000 0.252
#> SRR1643468 2 0.454 0.854 0.000 0.720 0.008 0.272
#> SRR1643469 2 0.454 0.854 0.000 0.720 0.008 0.272
#> SRR1643470 2 0.454 0.854 0.000 0.720 0.008 0.272
#> SRR1643471 2 0.454 0.854 0.000 0.720 0.008 0.272
#> SRR1643472 2 0.454 0.854 0.000 0.720 0.008 0.272
#> SRR1643473 2 0.454 0.854 0.000 0.720 0.008 0.272
#> SRR1643474 2 0.454 0.854 0.000 0.720 0.008 0.272
#> SRR1643475 2 0.454 0.854 0.000 0.720 0.008 0.272
#> SRR1643477 2 0.454 0.854 0.000 0.720 0.008 0.272
#> SRR1643478 2 0.454 0.854 0.000 0.720 0.008 0.272
#> SRR1643479 2 0.454 0.854 0.000 0.720 0.008 0.272
#> SRR1643480 2 0.454 0.854 0.000 0.720 0.008 0.272
#> SRR1643481 2 0.463 0.854 0.000 0.732 0.016 0.252
#> SRR1643482 2 0.463 0.854 0.000 0.732 0.016 0.252
#> SRR1643483 2 0.463 0.854 0.000 0.732 0.016 0.252
#> SRR1643484 2 0.463 0.854 0.000 0.732 0.016 0.252
#> SRR1643485 2 0.463 0.854 0.000 0.732 0.016 0.252
#> SRR1643486 2 0.463 0.854 0.000 0.732 0.016 0.252
#> SRR1643487 2 0.463 0.854 0.000 0.732 0.016 0.252
#> SRR1643488 2 0.463 0.854 0.000 0.732 0.016 0.252
#> SRR1643489 2 0.463 0.854 0.000 0.732 0.016 0.252
#> SRR1643490 2 0.463 0.854 0.000 0.732 0.016 0.252
#> SRR1643491 2 0.463 0.854 0.000 0.732 0.016 0.252
#> SRR1643492 2 0.463 0.854 0.000 0.732 0.016 0.252
#> SRR1643493 2 0.463 0.854 0.000 0.732 0.016 0.252
#> SRR1643494 2 0.463 0.854 0.000 0.732 0.016 0.252
#> SRR1643495 2 0.463 0.854 0.000 0.732 0.016 0.252
#> SRR1643496 2 0.463 0.854 0.000 0.732 0.016 0.252
#> SRR1643497 2 0.490 0.850 0.000 0.716 0.024 0.260
#> SRR1643498 2 0.490 0.850 0.000 0.716 0.024 0.260
#> SRR1643499 2 0.490 0.850 0.000 0.716 0.024 0.260
#> SRR1643500 2 0.490 0.850 0.000 0.716 0.024 0.260
#> SRR1643501 2 0.490 0.850 0.000 0.716 0.024 0.260
#> SRR1643502 2 0.490 0.850 0.000 0.716 0.024 0.260
#> SRR1643503 2 0.490 0.850 0.000 0.716 0.024 0.260
#> SRR1643504 2 0.490 0.850 0.000 0.716 0.024 0.260
#> SRR1643505 2 0.496 0.850 0.000 0.716 0.028 0.256
#> SRR1643506 2 0.490 0.850 0.000 0.716 0.024 0.260
#> SRR1643507 2 0.490 0.850 0.000 0.716 0.024 0.260
#> SRR1643508 2 0.490 0.850 0.000 0.716 0.024 0.260
#> SRR1643509 2 0.490 0.850 0.000 0.716 0.024 0.260
#> SRR1643510 2 0.490 0.850 0.000 0.716 0.024 0.260
#> SRR1643511 2 0.490 0.850 0.000 0.716 0.024 0.260
#> SRR1643512 2 0.490 0.850 0.000 0.716 0.024 0.260
#> SRR1643513 2 0.490 0.850 0.000 0.716 0.024 0.260
#> SRR1643531 2 0.345 0.816 0.000 0.868 0.080 0.052
#> SRR1643532 2 0.345 0.816 0.000 0.868 0.080 0.052
#> SRR1643533 2 0.345 0.816 0.000 0.868 0.080 0.052
#> SRR1643534 2 0.345 0.816 0.000 0.868 0.080 0.052
#> SRR1643535 2 0.345 0.816 0.000 0.868 0.080 0.052
#> SRR1643536 2 0.345 0.816 0.000 0.868 0.080 0.052
#> SRR1643537 2 0.345 0.816 0.000 0.868 0.080 0.052
#> SRR1643538 2 0.345 0.816 0.000 0.868 0.080 0.052
#> SRR1643539 2 0.345 0.816 0.000 0.868 0.080 0.052
#> SRR1643540 2 0.345 0.816 0.000 0.868 0.080 0.052
#> SRR1643541 2 0.345 0.816 0.000 0.868 0.080 0.052
#> SRR1643542 2 0.345 0.816 0.000 0.868 0.080 0.052
#> SRR1643543 2 0.345 0.816 0.000 0.868 0.080 0.052
#> SRR1643544 2 0.345 0.816 0.000 0.868 0.080 0.052
#> SRR1643514 2 0.238 0.843 0.000 0.920 0.028 0.052
#> SRR1643515 2 0.238 0.843 0.000 0.920 0.028 0.052
#> SRR1643516 2 0.238 0.843 0.000 0.920 0.028 0.052
#> SRR1643517 2 0.238 0.843 0.000 0.920 0.028 0.052
#> SRR1643518 2 0.238 0.843 0.000 0.920 0.028 0.052
#> SRR1643519 2 0.238 0.843 0.000 0.920 0.028 0.052
#> SRR1643520 2 0.238 0.843 0.000 0.920 0.028 0.052
#> SRR1643521 2 0.238 0.843 0.000 0.920 0.028 0.052
#> SRR1643522 2 0.238 0.843 0.000 0.920 0.028 0.052
#> SRR1643523 2 0.238 0.843 0.000 0.920 0.028 0.052
#> SRR1643524 2 0.238 0.843 0.000 0.920 0.028 0.052
#> SRR1643525 2 0.238 0.843 0.000 0.920 0.028 0.052
#> SRR1643526 2 0.238 0.843 0.000 0.920 0.028 0.052
#> SRR1643527 2 0.238 0.843 0.000 0.920 0.028 0.052
#> SRR1643528 2 0.238 0.843 0.000 0.920 0.028 0.052
#> SRR1643529 2 0.238 0.843 0.000 0.920 0.028 0.052
#> SRR1643530 2 0.238 0.843 0.000 0.920 0.028 0.052
#> SRR1643545 2 0.471 0.858 0.000 0.732 0.020 0.248
#> SRR1643546 2 0.471 0.858 0.000 0.732 0.020 0.248
#> SRR1643547 2 0.471 0.858 0.000 0.732 0.020 0.248
#> SRR1643548 2 0.471 0.858 0.000 0.732 0.020 0.248
#> SRR1643549 2 0.471 0.858 0.000 0.732 0.020 0.248
#> SRR1643550 2 0.471 0.858 0.000 0.732 0.020 0.248
#> SRR1643551 2 0.471 0.858 0.000 0.732 0.020 0.248
#> SRR1643552 2 0.471 0.858 0.000 0.732 0.020 0.248
#> SRR1643553 2 0.471 0.858 0.000 0.732 0.020 0.248
#> SRR1643554 2 0.471 0.858 0.000 0.732 0.020 0.248
#> SRR1643555 2 0.471 0.858 0.000 0.732 0.020 0.248
#> SRR1643556 2 0.471 0.858 0.000 0.732 0.020 0.248
#> SRR1643558 2 0.471 0.858 0.000 0.732 0.020 0.248
#> SRR1643559 2 0.171 0.841 0.000 0.948 0.016 0.036
#> SRR1643560 2 0.171 0.841 0.000 0.948 0.016 0.036
#> SRR1643561 2 0.171 0.841 0.000 0.948 0.016 0.036
#> SRR1643562 2 0.171 0.841 0.000 0.948 0.016 0.036
#> SRR1643563 2 0.171 0.841 0.000 0.948 0.016 0.036
#> SRR1643564 2 0.171 0.841 0.000 0.948 0.016 0.036
#> SRR1643565 2 0.171 0.841 0.000 0.948 0.016 0.036
#> SRR1643566 2 0.171 0.841 0.000 0.948 0.016 0.036
#> SRR1643567 2 0.171 0.841 0.000 0.948 0.016 0.036
#> SRR1643568 2 0.171 0.841 0.000 0.948 0.016 0.036
#> SRR1643569 2 0.171 0.841 0.000 0.948 0.016 0.036
#> SRR1643570 2 0.171 0.841 0.000 0.948 0.016 0.036
#> SRR1643571 2 0.171 0.841 0.000 0.948 0.016 0.036
#> SRR1643572 2 0.171 0.841 0.000 0.948 0.016 0.036
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 1 0.4271 0.638401 0.784 0.000 0.008 0.068 NA
#> SRR1643168 1 0.4271 0.638401 0.784 0.000 0.008 0.068 NA
#> SRR1643169 1 0.4271 0.638401 0.784 0.000 0.008 0.068 NA
#> SRR1643170 1 0.4271 0.638401 0.784 0.000 0.008 0.068 NA
#> SRR1643171 1 0.4255 0.641888 0.788 0.000 0.012 0.060 NA
#> SRR1643172 1 0.4255 0.641888 0.788 0.000 0.012 0.060 NA
#> SRR1643173 1 0.4255 0.641888 0.788 0.000 0.012 0.060 NA
#> SRR1643174 1 0.4255 0.641888 0.788 0.000 0.012 0.060 NA
#> SRR1643175 1 0.3814 0.672378 0.816 0.000 0.004 0.064 NA
#> SRR1643176 1 0.3814 0.672378 0.816 0.000 0.004 0.064 NA
#> SRR1643177 1 0.3814 0.672378 0.816 0.000 0.004 0.064 NA
#> SRR1643178 1 0.3814 0.672378 0.816 0.000 0.004 0.064 NA
#> SRR1643180 1 0.4380 0.638405 0.780 0.000 0.012 0.068 NA
#> SRR1643181 1 0.4380 0.638405 0.780 0.000 0.012 0.068 NA
#> SRR1643182 1 0.4380 0.638405 0.780 0.000 0.012 0.068 NA
#> SRR1643183 1 0.4380 0.638405 0.780 0.000 0.012 0.068 NA
#> SRR1643184 1 0.4380 0.638405 0.780 0.000 0.012 0.068 NA
#> SRR1643185 1 0.4380 0.638405 0.780 0.000 0.012 0.068 NA
#> SRR1643186 1 0.4380 0.638405 0.780 0.000 0.012 0.068 NA
#> SRR1643187 1 0.4568 0.630423 0.764 0.000 0.008 0.092 NA
#> SRR1643188 1 0.4568 0.630423 0.764 0.000 0.008 0.092 NA
#> SRR1643189 1 0.4568 0.630423 0.764 0.000 0.008 0.092 NA
#> SRR1643190 1 0.4568 0.630423 0.764 0.000 0.008 0.092 NA
#> SRR1643191 1 0.4103 0.644180 0.796 0.000 0.008 0.060 NA
#> SRR1643192 1 0.4103 0.644180 0.796 0.000 0.008 0.060 NA
#> SRR1643193 1 0.4557 0.627129 0.764 0.000 0.008 0.088 NA
#> SRR1643194 1 0.4557 0.627129 0.764 0.000 0.008 0.088 NA
#> SRR1643195 4 0.6495 0.353946 0.420 0.000 0.008 0.428 NA
#> SRR1643196 4 0.6495 0.353946 0.420 0.000 0.008 0.428 NA
#> SRR1643197 1 0.4014 0.649587 0.804 0.000 0.008 0.060 NA
#> SRR1643198 1 0.4014 0.649587 0.804 0.000 0.008 0.060 NA
#> SRR1643199 1 0.4271 0.638401 0.784 0.000 0.008 0.068 NA
#> SRR1643200 1 0.4271 0.638401 0.784 0.000 0.008 0.068 NA
#> SRR1643201 1 0.4803 0.609896 0.744 0.000 0.008 0.104 NA
#> SRR1643202 1 0.4803 0.609896 0.744 0.000 0.008 0.104 NA
#> SRR1643203 1 0.4360 0.638855 0.780 0.000 0.008 0.080 NA
#> SRR1643204 1 0.4360 0.638855 0.780 0.000 0.008 0.080 NA
#> SRR1643205 3 0.2228 0.980477 0.092 0.000 0.900 0.004 NA
#> SRR1643206 3 0.2228 0.980477 0.092 0.000 0.900 0.004 NA
#> SRR1643207 3 0.2228 0.980477 0.092 0.000 0.900 0.004 NA
#> SRR1643208 3 0.2228 0.980477 0.092 0.000 0.900 0.004 NA
#> SRR1643209 3 0.3163 0.977258 0.092 0.000 0.864 0.012 NA
#> SRR1643210 3 0.3163 0.977258 0.092 0.000 0.864 0.012 NA
#> SRR1643211 3 0.2068 0.980905 0.092 0.000 0.904 0.000 NA
#> SRR1643212 3 0.2068 0.980905 0.092 0.000 0.904 0.000 NA
#> SRR1643213 3 0.2068 0.980905 0.092 0.000 0.904 0.000 NA
#> SRR1643214 3 0.2068 0.980905 0.092 0.000 0.904 0.000 NA
#> SRR1643215 3 0.3441 0.975071 0.092 0.000 0.852 0.020 NA
#> SRR1643216 3 0.3441 0.975071 0.092 0.000 0.852 0.020 NA
#> SRR1643217 3 0.3441 0.975071 0.092 0.000 0.852 0.020 NA
#> SRR1643218 3 0.3441 0.975071 0.092 0.000 0.852 0.020 NA
#> SRR1643219 3 0.3441 0.975071 0.092 0.000 0.852 0.020 NA
#> SRR1643220 3 0.3441 0.975071 0.092 0.000 0.852 0.020 NA
#> SRR1643221 3 0.2464 0.980299 0.092 0.000 0.892 0.012 NA
#> SRR1643222 3 0.2464 0.980299 0.092 0.000 0.892 0.012 NA
#> SRR1643223 3 0.2701 0.979702 0.092 0.000 0.884 0.012 NA
#> SRR1643224 3 0.2701 0.979702 0.092 0.000 0.884 0.012 NA
#> SRR1643225 3 0.2701 0.979702 0.092 0.000 0.884 0.012 NA
#> SRR1643226 3 0.2701 0.979702 0.092 0.000 0.884 0.012 NA
#> SRR1643227 3 0.2589 0.980095 0.092 0.000 0.888 0.012 NA
#> SRR1643228 3 0.2589 0.980095 0.092 0.000 0.888 0.012 NA
#> SRR1643229 3 0.2589 0.980095 0.092 0.000 0.888 0.012 NA
#> SRR1643230 3 0.2589 0.980095 0.092 0.000 0.888 0.012 NA
#> SRR1643231 3 0.3182 0.978319 0.092 0.000 0.864 0.028 NA
#> SRR1643232 3 0.2228 0.980477 0.092 0.000 0.900 0.004 NA
#> SRR1643233 3 0.3609 0.973648 0.092 0.000 0.844 0.024 NA
#> SRR1643234 3 0.3609 0.973648 0.092 0.000 0.844 0.024 NA
#> SRR1643235 3 0.2352 0.980471 0.092 0.000 0.896 0.008 NA
#> SRR1643236 3 0.2352 0.980492 0.092 0.000 0.896 0.004 NA
#> SRR1643237 3 0.2352 0.980492 0.092 0.000 0.896 0.004 NA
#> SRR1643238 3 0.2568 0.980149 0.092 0.000 0.888 0.004 NA
#> SRR1643239 3 0.2568 0.980149 0.092 0.000 0.888 0.004 NA
#> SRR1643240 3 0.2568 0.980149 0.092 0.000 0.888 0.004 NA
#> SRR1643241 3 0.2568 0.980149 0.092 0.000 0.888 0.004 NA
#> SRR1643242 3 0.3770 0.970726 0.092 0.000 0.836 0.028 NA
#> SRR1643243 3 0.3423 0.975533 0.092 0.000 0.852 0.016 NA
#> SRR1643245 3 0.3423 0.975533 0.092 0.000 0.852 0.016 NA
#> SRR1643246 3 0.3423 0.975533 0.092 0.000 0.852 0.016 NA
#> SRR1643247 3 0.3423 0.975533 0.092 0.000 0.852 0.016 NA
#> SRR1643248 3 0.2789 0.980410 0.092 0.000 0.880 0.020 NA
#> SRR1643249 3 0.6308 0.804205 0.144 0.000 0.648 0.064 NA
#> SRR1643250 4 0.4637 0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643251 4 0.4637 0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643252 4 0.4637 0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643253 4 0.4637 0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643254 4 0.4637 0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643255 4 0.4637 0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643256 4 0.4637 0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643257 4 0.4637 0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643258 4 0.4637 0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643259 4 0.4637 0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643260 4 0.4637 0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643261 4 0.4637 0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643262 4 0.4622 0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643263 4 0.4622 0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643264 4 0.4622 0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643266 4 0.4622 0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643267 4 0.4622 0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643268 4 0.4622 0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643269 4 0.4622 0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643270 4 0.4622 0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643271 4 0.4622 0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643272 4 0.4622 0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643273 1 0.5179 0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643274 1 0.5179 0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643275 1 0.5179 0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643276 1 0.5179 0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643277 1 0.5179 0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643278 1 0.5179 0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643279 1 0.5179 0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643280 1 0.5179 0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643281 1 0.5179 0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643282 1 0.5179 0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643283 1 0.5179 0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643284 1 0.5179 0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643285 1 0.5179 0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643286 1 0.5179 0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643287 4 0.5700 0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643288 4 0.5700 0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643289 4 0.5700 0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643290 4 0.5700 0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643291 4 0.5700 0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643292 4 0.5700 0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643293 4 0.5700 0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643294 4 0.5700 0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643295 4 0.5700 0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643296 4 0.5700 0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643297 4 0.5700 0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643298 4 0.5700 0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643299 4 0.5700 0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643300 4 0.5700 0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643301 1 0.4465 0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643302 1 0.4465 0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643303 1 0.4465 0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643304 1 0.4465 0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643305 1 0.4465 0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643306 1 0.4465 0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643307 1 0.4465 0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643308 1 0.4465 0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643309 1 0.4465 0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643310 1 0.4465 0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643311 1 0.4465 0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643312 1 0.4465 0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643313 1 0.4465 0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643314 1 0.2653 0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643315 1 0.2653 0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643316 1 0.2653 0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643317 1 0.2653 0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643318 1 0.2653 0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643319 1 0.2597 0.638401 0.884 0.000 0.000 0.092 NA
#> SRR1643320 1 0.2653 0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643321 1 0.2653 0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643322 1 0.2653 0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643323 1 0.2653 0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643324 1 0.2653 0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643325 1 0.2653 0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643326 1 0.2653 0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643327 1 0.2653 0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643328 1 0.1243 0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643329 1 0.1243 0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643330 1 0.1243 0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643331 1 0.1243 0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643332 1 0.1243 0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643333 1 0.1243 0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643334 1 0.1243 0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643335 1 0.1243 0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643336 1 0.1243 0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643337 1 0.1243 0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643338 1 0.1243 0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643339 1 0.1243 0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643340 1 0.1243 0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643341 1 0.1243 0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643342 1 0.1243 0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643343 1 0.4734 0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643344 1 0.4734 0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643345 1 0.4734 0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643346 1 0.4734 0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643347 1 0.4734 0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643348 1 0.4734 0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643349 1 0.4734 0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643350 1 0.4734 0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643351 1 0.4734 0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643352 1 0.4734 0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643353 1 0.4734 0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643354 1 0.4734 0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643355 1 0.4734 0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643356 1 0.4734 0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643357 1 0.4734 0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643358 4 0.4420 0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643359 4 0.4420 0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643360 4 0.4420 0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643361 4 0.4420 0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643362 4 0.4420 0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643363 4 0.4420 0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643364 4 0.4420 0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643365 4 0.4420 0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643366 4 0.4420 0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643367 4 0.4420 0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643368 4 0.4420 0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643369 4 0.4420 0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643370 4 0.4420 0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643371 4 0.4420 0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643372 4 0.4420 0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643373 4 0.4528 0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643374 4 0.4528 0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643375 4 0.4528 0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643376 4 0.4528 0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643377 4 0.4528 0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643378 4 0.4528 0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643379 4 0.4528 0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643380 4 0.4528 0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643381 4 0.4528 0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643382 4 0.4528 0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643383 4 0.4528 0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643384 4 0.4528 0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643385 4 0.4528 0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643386 4 0.4528 0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643387 4 0.4528 0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643388 4 0.4528 0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643389 4 0.4528 0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643390 1 0.1369 0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643391 1 0.1369 0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643392 1 0.1369 0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643393 1 0.1369 0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643394 1 0.1369 0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643395 1 0.1369 0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643396 1 0.1369 0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643397 1 0.1369 0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643398 1 0.1369 0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643399 1 0.1369 0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643400 1 0.1369 0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643401 1 0.1369 0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643402 1 0.1369 0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643403 1 0.1369 0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643404 1 0.1369 0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643405 1 0.2278 0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643406 1 0.2278 0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643407 1 0.2278 0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643408 1 0.2278 0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643409 1 0.2278 0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643410 1 0.2278 0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643411 1 0.2278 0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643412 1 0.2278 0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643413 1 0.2278 0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643414 1 0.2278 0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643415 1 0.2278 0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643416 1 0.2278 0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643417 1 0.2278 0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643418 4 0.5322 0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643419 4 0.5322 0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643420 4 0.5322 0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643421 4 0.5322 0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643422 4 0.5322 0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643423 4 0.5322 0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643424 4 0.5322 0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643425 4 0.5322 0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643426 4 0.5322 0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643427 4 0.5322 0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643428 4 0.5322 0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643429 4 0.5322 0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643430 4 0.5053 0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643431 4 0.5053 0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643432 4 0.5053 0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643433 4 0.5053 0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643434 4 0.5053 0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643435 4 0.5053 0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643436 4 0.5053 0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643437 4 0.5053 0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643438 4 0.5053 0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643439 4 0.5053 0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643440 4 0.5053 0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643441 4 0.5053 0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643442 4 0.5053 0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643443 2 0.5473 0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643444 2 0.5473 0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643445 2 0.5473 0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643446 2 0.5473 0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643447 2 0.5473 0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643448 2 0.5473 0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643449 2 0.5473 0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643450 2 0.5473 0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643451 2 0.5473 0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643452 2 0.5473 0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643453 2 0.5473 0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643454 2 0.5473 0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643455 2 0.5473 0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643456 2 0.0613 0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643457 2 0.0613 0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643458 2 0.0613 0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643459 2 0.0613 0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643460 2 0.0613 0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643461 2 0.0613 0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643462 2 0.0613 0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643463 2 0.0613 0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643464 2 0.0613 0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643466 2 0.0613 0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643467 2 0.0613 0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643468 2 0.1948 0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643469 2 0.1948 0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643470 2 0.1948 0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643471 2 0.1948 0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643472 2 0.1948 0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643473 2 0.1948 0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643474 2 0.1948 0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643475 2 0.1948 0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643477 2 0.1948 0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643478 2 0.1948 0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643479 2 0.1948 0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643480 2 0.1948 0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643481 2 0.1356 0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643482 2 0.1356 0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643483 2 0.1356 0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643484 2 0.1356 0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643485 2 0.1356 0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643486 2 0.1356 0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643487 2 0.1356 0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643488 2 0.1356 0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643489 2 0.1356 0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643490 2 0.1356 0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643491 2 0.1356 0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643492 2 0.1356 0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643493 2 0.1356 0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643494 2 0.1356 0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643495 2 0.1356 0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643496 2 0.1356 0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643497 2 0.4538 0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643498 2 0.4538 0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643499 2 0.4538 0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643500 2 0.4538 0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643501 2 0.4538 0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643502 2 0.4538 0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643503 2 0.4538 0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643504 2 0.4538 0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643505 2 0.4844 0.789322 0.000 0.752 0.024 0.072 NA
#> SRR1643506 2 0.4538 0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643507 2 0.4538 0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643508 2 0.4538 0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643509 2 0.4538 0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643510 2 0.4538 0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643511 2 0.4538 0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643512 2 0.4538 0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643513 2 0.4538 0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643531 2 0.4480 0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643532 2 0.4480 0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643533 2 0.4480 0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643534 2 0.4480 0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643535 2 0.4480 0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643536 2 0.4480 0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643537 2 0.4480 0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643538 2 0.4480 0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643539 2 0.4480 0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643540 2 0.4480 0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643541 2 0.4480 0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643542 2 0.4480 0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643543 2 0.4480 0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643544 2 0.4480 0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643514 2 0.5034 0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643515 2 0.5034 0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643516 2 0.5034 0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643517 2 0.5034 0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643518 2 0.5034 0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643519 2 0.5034 0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643520 2 0.5034 0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643521 2 0.5034 0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643522 2 0.5034 0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643523 2 0.5034 0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643524 2 0.5034 0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643525 2 0.5034 0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643526 2 0.5034 0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643527 2 0.5034 0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643528 2 0.5034 0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643529 2 0.5034 0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643530 2 0.5034 0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643545 2 0.2363 0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643546 2 0.2363 0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643547 2 0.2363 0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643548 2 0.2363 0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643549 2 0.2363 0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643550 2 0.2363 0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643551 2 0.2363 0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643552 2 0.2363 0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643553 2 0.2363 0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643554 2 0.2363 0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643555 2 0.2363 0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643556 2 0.2363 0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643558 2 0.2363 0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643559 2 0.4528 0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643560 2 0.4528 0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643561 2 0.4528 0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643562 2 0.4528 0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643563 2 0.4528 0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643564 2 0.4528 0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643565 2 0.4528 0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643566 2 0.4528 0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643567 2 0.4528 0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643568 2 0.4528 0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643569 2 0.4528 0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643570 2 0.4528 0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643571 2 0.4528 0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643572 2 0.4528 0.803611 0.000 0.680 0.012 0.012 NA
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 1 0.575 0.6262 0.504 0.000 0.000 0.208 0.000 NA
#> SRR1643168 1 0.575 0.6262 0.504 0.000 0.000 0.208 0.000 NA
#> SRR1643169 1 0.575 0.6262 0.504 0.000 0.000 0.208 0.000 NA
#> SRR1643170 1 0.575 0.6262 0.504 0.000 0.000 0.208 0.000 NA
#> SRR1643171 1 0.588 0.6266 0.500 0.000 0.000 0.208 0.004 NA
#> SRR1643172 1 0.588 0.6266 0.500 0.000 0.000 0.208 0.004 NA
#> SRR1643173 1 0.588 0.6266 0.500 0.000 0.000 0.208 0.004 NA
#> SRR1643174 1 0.588 0.6266 0.500 0.000 0.000 0.208 0.004 NA
#> SRR1643175 1 0.633 0.6335 0.480 0.000 0.004 0.256 0.016 NA
#> SRR1643176 1 0.633 0.6335 0.480 0.000 0.004 0.256 0.016 NA
#> SRR1643177 1 0.633 0.6335 0.480 0.000 0.004 0.256 0.016 NA
#> SRR1643178 1 0.633 0.6335 0.480 0.000 0.004 0.256 0.016 NA
#> SRR1643180 1 0.587 0.6264 0.504 0.000 0.000 0.208 0.004 NA
#> SRR1643181 1 0.587 0.6264 0.504 0.000 0.000 0.208 0.004 NA
#> SRR1643182 1 0.587 0.6264 0.504 0.000 0.000 0.208 0.004 NA
#> SRR1643183 1 0.587 0.6264 0.504 0.000 0.000 0.208 0.004 NA
#> SRR1643184 1 0.587 0.6264 0.504 0.000 0.000 0.208 0.004 NA
#> SRR1643185 1 0.587 0.6264 0.504 0.000 0.000 0.208 0.004 NA
#> SRR1643186 1 0.587 0.6264 0.504 0.000 0.000 0.208 0.004 NA
#> SRR1643187 1 0.611 0.6258 0.492 0.000 0.004 0.208 0.008 NA
#> SRR1643188 1 0.611 0.6258 0.492 0.000 0.004 0.208 0.008 NA
#> SRR1643189 1 0.611 0.6258 0.492 0.000 0.004 0.208 0.008 NA
#> SRR1643190 1 0.611 0.6258 0.492 0.000 0.004 0.208 0.008 NA
#> SRR1643191 1 0.574 0.6296 0.508 0.000 0.000 0.208 0.000 NA
#> SRR1643192 1 0.574 0.6296 0.508 0.000 0.000 0.208 0.000 NA
#> SRR1643193 1 0.575 0.6262 0.504 0.000 0.000 0.208 0.000 NA
#> SRR1643194 1 0.575 0.6262 0.504 0.000 0.000 0.208 0.000 NA
#> SRR1643195 4 0.571 0.1422 0.172 0.000 0.000 0.552 0.008 NA
#> SRR1643196 4 0.571 0.1422 0.172 0.000 0.000 0.552 0.008 NA
#> SRR1643197 1 0.597 0.6313 0.508 0.000 0.004 0.208 0.004 NA
#> SRR1643198 1 0.597 0.6313 0.508 0.000 0.004 0.208 0.004 NA
#> SRR1643199 1 0.575 0.6262 0.504 0.000 0.000 0.208 0.000 NA
#> SRR1643200 1 0.575 0.6262 0.504 0.000 0.000 0.208 0.000 NA
#> SRR1643201 1 0.589 0.6230 0.500 0.000 0.000 0.212 0.004 NA
#> SRR1643202 1 0.589 0.6230 0.500 0.000 0.000 0.212 0.004 NA
#> SRR1643203 1 0.610 0.6263 0.496 0.000 0.004 0.208 0.008 NA
#> SRR1643204 1 0.610 0.6263 0.496 0.000 0.004 0.208 0.008 NA
#> SRR1643205 3 0.115 0.9643 0.004 0.000 0.956 0.036 0.004 NA
#> SRR1643206 3 0.115 0.9643 0.004 0.000 0.956 0.036 0.004 NA
#> SRR1643207 3 0.115 0.9643 0.004 0.000 0.956 0.036 0.004 NA
#> SRR1643208 3 0.115 0.9643 0.004 0.000 0.956 0.036 0.004 NA
#> SRR1643209 3 0.295 0.9542 0.012 0.000 0.876 0.036 0.020 NA
#> SRR1643210 3 0.295 0.9542 0.012 0.000 0.876 0.036 0.020 NA
#> SRR1643211 3 0.115 0.9650 0.004 0.000 0.956 0.036 0.004 NA
#> SRR1643212 3 0.115 0.9650 0.004 0.000 0.956 0.036 0.004 NA
#> SRR1643213 3 0.115 0.9650 0.004 0.000 0.956 0.036 0.004 NA
#> SRR1643214 3 0.115 0.9650 0.004 0.000 0.956 0.036 0.004 NA
#> SRR1643215 3 0.316 0.9513 0.016 0.000 0.864 0.036 0.020 NA
#> SRR1643216 3 0.316 0.9513 0.016 0.000 0.864 0.036 0.020 NA
#> SRR1643217 3 0.316 0.9513 0.016 0.000 0.864 0.036 0.020 NA
#> SRR1643218 3 0.316 0.9513 0.016 0.000 0.864 0.036 0.020 NA
#> SRR1643219 3 0.316 0.9513 0.016 0.000 0.864 0.036 0.020 NA
#> SRR1643220 3 0.316 0.9513 0.016 0.000 0.864 0.036 0.020 NA
#> SRR1643221 3 0.127 0.9643 0.004 0.000 0.952 0.036 0.008 NA
#> SRR1643222 3 0.127 0.9643 0.004 0.000 0.952 0.036 0.008 NA
#> SRR1643223 3 0.183 0.9625 0.008 0.000 0.932 0.036 0.008 NA
#> SRR1643224 3 0.183 0.9625 0.008 0.000 0.932 0.036 0.008 NA
#> SRR1643225 3 0.183 0.9625 0.008 0.000 0.932 0.036 0.008 NA
#> SRR1643226 3 0.183 0.9625 0.008 0.000 0.932 0.036 0.008 NA
#> SRR1643227 3 0.183 0.9628 0.008 0.000 0.932 0.036 0.008 NA
#> SRR1643228 3 0.183 0.9628 0.008 0.000 0.932 0.036 0.008 NA
#> SRR1643229 3 0.164 0.9638 0.008 0.000 0.940 0.036 0.008 NA
#> SRR1643230 3 0.141 0.9642 0.004 0.000 0.948 0.036 0.008 NA
#> SRR1643231 3 0.231 0.9594 0.012 0.000 0.912 0.036 0.020 NA
#> SRR1643232 3 0.127 0.9642 0.004 0.000 0.952 0.036 0.008 NA
#> SRR1643233 3 0.341 0.9477 0.016 0.000 0.848 0.036 0.024 NA
#> SRR1643234 3 0.341 0.9477 0.016 0.000 0.848 0.036 0.024 NA
#> SRR1643235 3 0.127 0.9642 0.004 0.000 0.952 0.036 0.008 NA
#> SRR1643236 3 0.127 0.9642 0.004 0.000 0.952 0.036 0.008 NA
#> SRR1643237 3 0.127 0.9642 0.004 0.000 0.952 0.036 0.008 NA
#> SRR1643238 3 0.200 0.9632 0.004 0.000 0.924 0.036 0.016 NA
#> SRR1643239 3 0.200 0.9632 0.004 0.000 0.924 0.036 0.016 NA
#> SRR1643240 3 0.200 0.9632 0.004 0.000 0.924 0.036 0.016 NA
#> SRR1643241 3 0.200 0.9632 0.004 0.000 0.924 0.036 0.016 NA
#> SRR1643242 3 0.383 0.9397 0.020 0.000 0.820 0.036 0.028 NA
#> SRR1643243 3 0.346 0.9482 0.016 0.000 0.844 0.036 0.024 NA
#> SRR1643245 3 0.346 0.9482 0.016 0.000 0.844 0.036 0.024 NA
#> SRR1643246 3 0.346 0.9482 0.016 0.000 0.844 0.036 0.024 NA
#> SRR1643247 3 0.346 0.9482 0.016 0.000 0.844 0.036 0.024 NA
#> SRR1643248 3 0.153 0.9640 0.008 0.000 0.944 0.036 0.008 NA
#> SRR1643249 3 0.655 0.6247 0.148 0.000 0.540 0.032 0.028 NA
#> SRR1643250 4 0.145 0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643251 4 0.145 0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643252 4 0.145 0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643253 4 0.145 0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643254 4 0.145 0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643255 4 0.145 0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643256 4 0.145 0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643257 4 0.145 0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643258 4 0.145 0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643259 4 0.145 0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643260 4 0.145 0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643261 4 0.145 0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643262 4 0.108 0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643263 4 0.108 0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643264 4 0.108 0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643266 4 0.108 0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643267 4 0.108 0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643268 4 0.108 0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643269 4 0.108 0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643270 4 0.108 0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643271 4 0.108 0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643272 4 0.108 0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643273 4 0.600 0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643274 4 0.600 0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643275 4 0.600 0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643276 4 0.600 0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643277 4 0.600 0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643278 4 0.600 0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643279 4 0.600 0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643280 4 0.600 0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643281 4 0.600 0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643282 4 0.600 0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643283 4 0.600 0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643284 4 0.600 0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643285 4 0.600 0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643286 4 0.600 0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643287 4 0.533 0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643288 4 0.533 0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643289 4 0.533 0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643290 4 0.533 0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643291 4 0.533 0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643292 4 0.533 0.5982 0.096 0.000 0.000 0.692 0.104 NA
#> SRR1643293 4 0.533 0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643294 4 0.533 0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643295 4 0.533 0.5982 0.096 0.000 0.000 0.692 0.104 NA
#> SRR1643296 4 0.533 0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643297 4 0.533 0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643298 4 0.533 0.5982 0.096 0.000 0.000 0.692 0.104 NA
#> SRR1643299 4 0.533 0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643300 4 0.533 0.5982 0.096 0.000 0.000 0.692 0.104 NA
#> SRR1643301 4 0.464 0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643302 4 0.464 0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643303 4 0.464 0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643304 4 0.464 0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643305 4 0.464 0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643306 4 0.464 0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643307 4 0.464 0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643308 4 0.464 0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643309 4 0.464 0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643310 4 0.464 0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643311 4 0.464 0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643312 4 0.464 0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643313 4 0.464 0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643314 1 0.491 0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643315 1 0.491 0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643316 1 0.491 0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643317 1 0.491 0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643318 1 0.491 0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643319 1 0.491 0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643320 1 0.491 0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643321 1 0.491 0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643322 1 0.491 0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643323 1 0.491 0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643324 1 0.491 0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643325 1 0.491 0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643326 1 0.491 0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643327 1 0.491 0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643328 1 0.384 0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643329 1 0.384 0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643330 1 0.384 0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643331 1 0.384 0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643332 1 0.384 0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643333 1 0.384 0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643334 1 0.384 0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643335 1 0.384 0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643336 1 0.384 0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643337 1 0.384 0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643338 1 0.384 0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643339 1 0.384 0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643340 1 0.384 0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643341 1 0.384 0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643342 1 0.384 0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643343 1 0.659 0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643344 1 0.659 0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643345 1 0.659 0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643346 1 0.659 0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643347 1 0.659 0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643348 1 0.659 0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643349 1 0.659 0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643350 1 0.659 0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643351 1 0.659 0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643352 1 0.659 0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643353 1 0.659 0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643354 1 0.659 0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643355 1 0.659 0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643356 1 0.659 0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643357 1 0.659 0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643358 4 0.164 0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643359 4 0.164 0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643360 4 0.164 0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643361 4 0.164 0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643362 4 0.164 0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643363 4 0.164 0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643364 4 0.164 0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643365 4 0.164 0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643366 4 0.164 0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643367 4 0.164 0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643368 4 0.164 0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643369 4 0.164 0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643370 4 0.164 0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643371 4 0.164 0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643372 4 0.164 0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643373 4 0.172 0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643374 4 0.172 0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643375 4 0.172 0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643376 4 0.172 0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643377 4 0.172 0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643378 4 0.172 0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643379 4 0.172 0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643380 4 0.172 0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643381 4 0.172 0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643382 4 0.172 0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643383 4 0.172 0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643384 4 0.172 0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643385 4 0.172 0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643386 4 0.172 0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643387 4 0.172 0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643388 4 0.172 0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643389 4 0.172 0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643390 1 0.434 0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643391 1 0.434 0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643392 1 0.434 0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643393 1 0.434 0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643394 1 0.434 0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643395 1 0.434 0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643396 1 0.434 0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643397 1 0.434 0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643398 1 0.434 0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643399 1 0.434 0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643400 1 0.434 0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643401 1 0.434 0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643402 1 0.434 0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643403 1 0.434 0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643404 1 0.434 0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643405 1 0.468 0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643406 1 0.468 0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643407 1 0.468 0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643408 1 0.468 0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643409 1 0.468 0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643410 1 0.468 0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643411 1 0.468 0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643412 1 0.468 0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643413 1 0.468 0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643414 1 0.468 0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643415 1 0.468 0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643416 1 0.468 0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643417 1 0.468 0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643418 4 0.345 0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643419 4 0.345 0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643420 4 0.345 0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643421 4 0.345 0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643422 4 0.345 0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643423 4 0.345 0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643424 4 0.345 0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643425 4 0.345 0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643426 4 0.345 0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643427 4 0.345 0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643428 4 0.345 0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643429 4 0.345 0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643430 4 0.325 0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643431 4 0.325 0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643432 4 0.325 0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643433 4 0.325 0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643434 4 0.325 0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643435 4 0.325 0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643436 4 0.325 0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643437 4 0.325 0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643438 4 0.325 0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643439 4 0.325 0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643440 4 0.325 0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643441 4 0.325 0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643442 4 0.325 0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643443 5 0.491 1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643444 5 0.491 1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643445 5 0.491 1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643446 5 0.491 1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643447 5 0.491 1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643448 5 0.491 1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643449 5 0.491 1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643450 5 0.491 1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643451 5 0.491 1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643452 5 0.491 1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643453 5 0.491 1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643454 5 0.491 1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643455 5 0.491 1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643456 2 0.144 0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643457 2 0.144 0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643458 2 0.144 0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643459 2 0.144 0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643460 2 0.144 0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643461 2 0.144 0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643462 2 0.144 0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643463 2 0.144 0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643464 2 0.144 0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643466 2 0.144 0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643467 2 0.144 0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643468 2 0.273 0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643469 2 0.273 0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643470 2 0.273 0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643471 2 0.273 0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643472 2 0.273 0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643473 2 0.273 0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643474 2 0.273 0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643475 2 0.273 0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643477 2 0.273 0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643478 2 0.273 0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643479 2 0.273 0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643480 2 0.273 0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643481 2 0.165 0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643482 2 0.165 0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643483 2 0.165 0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643484 2 0.165 0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643485 2 0.165 0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643486 2 0.165 0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643487 2 0.165 0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643488 2 0.165 0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643489 2 0.165 0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643490 2 0.165 0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643491 2 0.165 0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643492 2 0.165 0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643493 2 0.165 0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643494 2 0.165 0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643495 2 0.165 0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643496 2 0.165 0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643497 2 0.466 0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643498 2 0.466 0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643499 2 0.466 0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643500 2 0.466 0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643501 2 0.466 0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643502 2 0.466 0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643503 2 0.466 0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643504 2 0.466 0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643505 2 0.504 0.2207 0.004 0.684 0.012 0.000 0.164 NA
#> SRR1643506 2 0.466 0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643507 2 0.466 0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643508 2 0.466 0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643509 2 0.466 0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643510 2 0.466 0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643511 2 0.466 0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643512 2 0.466 0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643513 2 0.466 0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643531 2 0.476 -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643532 2 0.476 -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643533 2 0.476 -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643534 2 0.476 -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643535 2 0.476 -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643536 2 0.476 -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643537 2 0.476 -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643538 2 0.476 -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643539 2 0.476 -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643540 2 0.476 -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643541 2 0.476 -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643542 2 0.476 -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643543 2 0.476 -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643544 2 0.476 -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643514 2 0.485 -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643515 2 0.485 -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643516 2 0.485 -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643517 2 0.485 -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643518 2 0.485 -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643519 2 0.485 -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643520 2 0.485 -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643521 2 0.485 -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643522 2 0.485 -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643523 2 0.485 -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643524 2 0.485 -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643525 2 0.485 -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643526 2 0.485 -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643527 2 0.485 -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643528 2 0.485 -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643529 2 0.485 -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643530 2 0.485 -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643545 2 0.372 0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643546 2 0.372 0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643547 2 0.372 0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643548 2 0.372 0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643549 2 0.372 0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643550 2 0.372 0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643551 2 0.372 0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643552 2 0.372 0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643553 2 0.372 0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643554 2 0.372 0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643555 2 0.372 0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643556 2 0.372 0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643558 2 0.372 0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643559 2 0.486 -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643560 2 0.486 -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643561 2 0.486 -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643562 2 0.486 -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643563 2 0.486 -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643564 2 0.486 -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643565 2 0.486 -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643566 2 0.486 -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643567 2 0.486 -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643568 2 0.486 -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643569 2 0.486 -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643570 2 0.486 -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643571 2 0.486 -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643572 2 0.486 -0.1249 0.020 0.584 0.000 0.000 0.364 NA
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["MAD", "skmeans"]
# you can also extract it by
# res = res_list["MAD:skmeans"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'MAD' method.
#> Subgroups are detected by 'skmeans' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 4.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.4350 0.566 0.566
#> 3 3 0.821 0.952 0.963 0.3293 0.874 0.777
#> 4 4 0.951 0.926 0.958 0.2429 0.836 0.627
#> 5 5 0.849 0.707 0.822 0.0611 0.951 0.823
#> 6 6 0.857 0.753 0.806 0.0369 0.942 0.768
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 4
#> attr(,"optional")
#> [1] 2
There is also optional best \(k\) = 2 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.394 0.890 0.844 0 0.156
#> SRR1643168 1 0.394 0.890 0.844 0 0.156
#> SRR1643169 1 0.394 0.890 0.844 0 0.156
#> SRR1643170 1 0.394 0.890 0.844 0 0.156
#> SRR1643171 1 0.394 0.890 0.844 0 0.156
#> SRR1643172 1 0.394 0.890 0.844 0 0.156
#> SRR1643173 1 0.394 0.890 0.844 0 0.156
#> SRR1643174 1 0.394 0.890 0.844 0 0.156
#> SRR1643175 1 0.296 0.916 0.900 0 0.100
#> SRR1643176 1 0.296 0.916 0.900 0 0.100
#> SRR1643177 1 0.296 0.916 0.900 0 0.100
#> SRR1643178 1 0.296 0.916 0.900 0 0.100
#> SRR1643180 1 0.394 0.890 0.844 0 0.156
#> SRR1643181 1 0.394 0.890 0.844 0 0.156
#> SRR1643182 1 0.394 0.890 0.844 0 0.156
#> SRR1643183 1 0.394 0.890 0.844 0 0.156
#> SRR1643184 1 0.394 0.890 0.844 0 0.156
#> SRR1643185 1 0.394 0.890 0.844 0 0.156
#> SRR1643186 1 0.394 0.890 0.844 0 0.156
#> SRR1643187 1 0.263 0.920 0.916 0 0.084
#> SRR1643188 1 0.263 0.920 0.916 0 0.084
#> SRR1643189 1 0.263 0.920 0.916 0 0.084
#> SRR1643190 1 0.263 0.920 0.916 0 0.084
#> SRR1643191 1 0.394 0.890 0.844 0 0.156
#> SRR1643192 1 0.394 0.890 0.844 0 0.156
#> SRR1643193 1 0.263 0.920 0.916 0 0.084
#> SRR1643194 1 0.263 0.920 0.916 0 0.084
#> SRR1643195 1 0.000 0.934 1.000 0 0.000
#> SRR1643196 1 0.000 0.934 1.000 0 0.000
#> SRR1643197 1 0.394 0.890 0.844 0 0.156
#> SRR1643198 1 0.394 0.890 0.844 0 0.156
#> SRR1643199 1 0.394 0.890 0.844 0 0.156
#> SRR1643200 1 0.394 0.890 0.844 0 0.156
#> SRR1643201 1 0.000 0.934 1.000 0 0.000
#> SRR1643202 1 0.000 0.934 1.000 0 0.000
#> SRR1643203 1 0.341 0.906 0.876 0 0.124
#> SRR1643204 1 0.341 0.906 0.876 0 0.124
#> SRR1643205 3 0.000 1.000 0.000 0 1.000
#> SRR1643206 3 0.000 1.000 0.000 0 1.000
#> SRR1643207 3 0.000 1.000 0.000 0 1.000
#> SRR1643208 3 0.000 1.000 0.000 0 1.000
#> SRR1643209 3 0.000 1.000 0.000 0 1.000
#> SRR1643210 3 0.000 1.000 0.000 0 1.000
#> SRR1643211 3 0.000 1.000 0.000 0 1.000
#> SRR1643212 3 0.000 1.000 0.000 0 1.000
#> SRR1643213 3 0.000 1.000 0.000 0 1.000
#> SRR1643214 3 0.000 1.000 0.000 0 1.000
#> SRR1643215 3 0.000 1.000 0.000 0 1.000
#> SRR1643216 3 0.000 1.000 0.000 0 1.000
#> SRR1643217 3 0.000 1.000 0.000 0 1.000
#> SRR1643218 3 0.000 1.000 0.000 0 1.000
#> SRR1643219 3 0.000 1.000 0.000 0 1.000
#> SRR1643220 3 0.000 1.000 0.000 0 1.000
#> SRR1643221 3 0.000 1.000 0.000 0 1.000
#> SRR1643222 3 0.000 1.000 0.000 0 1.000
#> SRR1643223 3 0.000 1.000 0.000 0 1.000
#> SRR1643224 3 0.000 1.000 0.000 0 1.000
#> SRR1643225 3 0.000 1.000 0.000 0 1.000
#> SRR1643226 3 0.000 1.000 0.000 0 1.000
#> SRR1643227 3 0.000 1.000 0.000 0 1.000
#> SRR1643228 3 0.000 1.000 0.000 0 1.000
#> SRR1643229 3 0.000 1.000 0.000 0 1.000
#> SRR1643230 3 0.000 1.000 0.000 0 1.000
#> SRR1643231 3 0.000 1.000 0.000 0 1.000
#> SRR1643232 3 0.000 1.000 0.000 0 1.000
#> SRR1643233 3 0.000 1.000 0.000 0 1.000
#> SRR1643234 3 0.000 1.000 0.000 0 1.000
#> SRR1643235 3 0.000 1.000 0.000 0 1.000
#> SRR1643236 3 0.000 1.000 0.000 0 1.000
#> SRR1643237 3 0.000 1.000 0.000 0 1.000
#> SRR1643238 3 0.000 1.000 0.000 0 1.000
#> SRR1643239 3 0.000 1.000 0.000 0 1.000
#> SRR1643240 3 0.000 1.000 0.000 0 1.000
#> SRR1643241 3 0.000 1.000 0.000 0 1.000
#> SRR1643242 3 0.000 1.000 0.000 0 1.000
#> SRR1643243 3 0.000 1.000 0.000 0 1.000
#> SRR1643245 3 0.000 1.000 0.000 0 1.000
#> SRR1643246 3 0.000 1.000 0.000 0 1.000
#> SRR1643247 3 0.000 1.000 0.000 0 1.000
#> SRR1643248 3 0.000 1.000 0.000 0 1.000
#> SRR1643249 3 0.000 1.000 0.000 0 1.000
#> SRR1643250 1 0.000 0.934 1.000 0 0.000
#> SRR1643251 1 0.000 0.934 1.000 0 0.000
#> SRR1643252 1 0.000 0.934 1.000 0 0.000
#> SRR1643253 1 0.000 0.934 1.000 0 0.000
#> SRR1643254 1 0.000 0.934 1.000 0 0.000
#> SRR1643255 1 0.000 0.934 1.000 0 0.000
#> SRR1643256 1 0.000 0.934 1.000 0 0.000
#> SRR1643257 1 0.000 0.934 1.000 0 0.000
#> SRR1643258 1 0.000 0.934 1.000 0 0.000
#> SRR1643259 1 0.000 0.934 1.000 0 0.000
#> SRR1643260 1 0.000 0.934 1.000 0 0.000
#> SRR1643261 1 0.000 0.934 1.000 0 0.000
#> SRR1643262 1 0.000 0.934 1.000 0 0.000
#> SRR1643263 1 0.000 0.934 1.000 0 0.000
#> SRR1643264 1 0.000 0.934 1.000 0 0.000
#> SRR1643266 1 0.000 0.934 1.000 0 0.000
#> SRR1643267 1 0.000 0.934 1.000 0 0.000
#> SRR1643268 1 0.000 0.934 1.000 0 0.000
#> SRR1643269 1 0.000 0.934 1.000 0 0.000
#> SRR1643270 1 0.000 0.934 1.000 0 0.000
#> SRR1643271 1 0.000 0.934 1.000 0 0.000
#> SRR1643272 1 0.000 0.934 1.000 0 0.000
#> SRR1643273 1 0.000 0.934 1.000 0 0.000
#> SRR1643274 1 0.000 0.934 1.000 0 0.000
#> SRR1643275 1 0.000 0.934 1.000 0 0.000
#> SRR1643276 1 0.000 0.934 1.000 0 0.000
#> SRR1643277 1 0.000 0.934 1.000 0 0.000
#> SRR1643278 1 0.000 0.934 1.000 0 0.000
#> SRR1643279 1 0.000 0.934 1.000 0 0.000
#> SRR1643280 1 0.000 0.934 1.000 0 0.000
#> SRR1643281 1 0.000 0.934 1.000 0 0.000
#> SRR1643282 1 0.000 0.934 1.000 0 0.000
#> SRR1643283 1 0.000 0.934 1.000 0 0.000
#> SRR1643284 1 0.000 0.934 1.000 0 0.000
#> SRR1643285 1 0.000 0.934 1.000 0 0.000
#> SRR1643286 1 0.000 0.934 1.000 0 0.000
#> SRR1643287 1 0.000 0.934 1.000 0 0.000
#> SRR1643288 1 0.000 0.934 1.000 0 0.000
#> SRR1643289 1 0.000 0.934 1.000 0 0.000
#> SRR1643290 1 0.000 0.934 1.000 0 0.000
#> SRR1643291 1 0.000 0.934 1.000 0 0.000
#> SRR1643292 1 0.000 0.934 1.000 0 0.000
#> SRR1643293 1 0.000 0.934 1.000 0 0.000
#> SRR1643294 1 0.000 0.934 1.000 0 0.000
#> SRR1643295 1 0.000 0.934 1.000 0 0.000
#> SRR1643296 1 0.000 0.934 1.000 0 0.000
#> SRR1643297 1 0.000 0.934 1.000 0 0.000
#> SRR1643298 1 0.000 0.934 1.000 0 0.000
#> SRR1643299 1 0.000 0.934 1.000 0 0.000
#> SRR1643300 1 0.000 0.934 1.000 0 0.000
#> SRR1643301 1 0.000 0.934 1.000 0 0.000
#> SRR1643302 1 0.000 0.934 1.000 0 0.000
#> SRR1643303 1 0.000 0.934 1.000 0 0.000
#> SRR1643304 1 0.000 0.934 1.000 0 0.000
#> SRR1643305 1 0.000 0.934 1.000 0 0.000
#> SRR1643306 1 0.000 0.934 1.000 0 0.000
#> SRR1643307 1 0.000 0.934 1.000 0 0.000
#> SRR1643308 1 0.000 0.934 1.000 0 0.000
#> SRR1643309 1 0.000 0.934 1.000 0 0.000
#> SRR1643310 1 0.000 0.934 1.000 0 0.000
#> SRR1643311 1 0.000 0.934 1.000 0 0.000
#> SRR1643312 1 0.000 0.934 1.000 0 0.000
#> SRR1643313 1 0.000 0.934 1.000 0 0.000
#> SRR1643314 1 0.280 0.918 0.908 0 0.092
#> SRR1643315 1 0.280 0.918 0.908 0 0.092
#> SRR1643316 1 0.280 0.918 0.908 0 0.092
#> SRR1643317 1 0.280 0.918 0.908 0 0.092
#> SRR1643318 1 0.280 0.918 0.908 0 0.092
#> SRR1643319 1 0.280 0.918 0.908 0 0.092
#> SRR1643320 1 0.280 0.918 0.908 0 0.092
#> SRR1643321 1 0.280 0.918 0.908 0 0.092
#> SRR1643322 1 0.280 0.918 0.908 0 0.092
#> SRR1643323 1 0.280 0.918 0.908 0 0.092
#> SRR1643324 1 0.280 0.918 0.908 0 0.092
#> SRR1643325 1 0.280 0.918 0.908 0 0.092
#> SRR1643326 1 0.280 0.918 0.908 0 0.092
#> SRR1643327 1 0.280 0.918 0.908 0 0.092
#> SRR1643328 1 0.418 0.880 0.828 0 0.172
#> SRR1643329 1 0.418 0.880 0.828 0 0.172
#> SRR1643330 1 0.418 0.880 0.828 0 0.172
#> SRR1643331 1 0.418 0.880 0.828 0 0.172
#> SRR1643332 1 0.418 0.880 0.828 0 0.172
#> SRR1643333 1 0.418 0.880 0.828 0 0.172
#> SRR1643334 1 0.418 0.880 0.828 0 0.172
#> SRR1643335 1 0.418 0.880 0.828 0 0.172
#> SRR1643336 1 0.418 0.880 0.828 0 0.172
#> SRR1643337 1 0.418 0.880 0.828 0 0.172
#> SRR1643338 1 0.418 0.880 0.828 0 0.172
#> SRR1643339 1 0.418 0.880 0.828 0 0.172
#> SRR1643340 1 0.418 0.880 0.828 0 0.172
#> SRR1643341 1 0.418 0.880 0.828 0 0.172
#> SRR1643342 1 0.418 0.880 0.828 0 0.172
#> SRR1643343 1 0.296 0.916 0.900 0 0.100
#> SRR1643344 1 0.296 0.916 0.900 0 0.100
#> SRR1643345 1 0.296 0.916 0.900 0 0.100
#> SRR1643346 1 0.296 0.916 0.900 0 0.100
#> SRR1643347 1 0.296 0.916 0.900 0 0.100
#> SRR1643348 1 0.296 0.916 0.900 0 0.100
#> SRR1643349 1 0.296 0.916 0.900 0 0.100
#> SRR1643350 1 0.296 0.916 0.900 0 0.100
#> SRR1643351 1 0.296 0.916 0.900 0 0.100
#> SRR1643352 1 0.296 0.916 0.900 0 0.100
#> SRR1643353 1 0.296 0.916 0.900 0 0.100
#> SRR1643354 1 0.296 0.916 0.900 0 0.100
#> SRR1643355 1 0.296 0.916 0.900 0 0.100
#> SRR1643356 1 0.296 0.916 0.900 0 0.100
#> SRR1643357 1 0.296 0.916 0.900 0 0.100
#> SRR1643358 1 0.000 0.934 1.000 0 0.000
#> SRR1643359 1 0.000 0.934 1.000 0 0.000
#> SRR1643360 1 0.000 0.934 1.000 0 0.000
#> SRR1643361 1 0.000 0.934 1.000 0 0.000
#> SRR1643362 1 0.000 0.934 1.000 0 0.000
#> SRR1643363 1 0.000 0.934 1.000 0 0.000
#> SRR1643364 1 0.000 0.934 1.000 0 0.000
#> SRR1643365 1 0.000 0.934 1.000 0 0.000
#> SRR1643366 1 0.000 0.934 1.000 0 0.000
#> SRR1643367 1 0.000 0.934 1.000 0 0.000
#> SRR1643368 1 0.000 0.934 1.000 0 0.000
#> SRR1643369 1 0.000 0.934 1.000 0 0.000
#> SRR1643370 1 0.000 0.934 1.000 0 0.000
#> SRR1643371 1 0.000 0.934 1.000 0 0.000
#> SRR1643372 1 0.000 0.934 1.000 0 0.000
#> SRR1643373 1 0.000 0.934 1.000 0 0.000
#> SRR1643374 1 0.000 0.934 1.000 0 0.000
#> SRR1643375 1 0.000 0.934 1.000 0 0.000
#> SRR1643376 1 0.000 0.934 1.000 0 0.000
#> SRR1643377 1 0.000 0.934 1.000 0 0.000
#> SRR1643378 1 0.000 0.934 1.000 0 0.000
#> SRR1643379 1 0.000 0.934 1.000 0 0.000
#> SRR1643380 1 0.000 0.934 1.000 0 0.000
#> SRR1643381 1 0.000 0.934 1.000 0 0.000
#> SRR1643382 1 0.000 0.934 1.000 0 0.000
#> SRR1643383 1 0.000 0.934 1.000 0 0.000
#> SRR1643384 1 0.000 0.934 1.000 0 0.000
#> SRR1643385 1 0.000 0.934 1.000 0 0.000
#> SRR1643386 1 0.000 0.934 1.000 0 0.000
#> SRR1643387 1 0.000 0.934 1.000 0 0.000
#> SRR1643388 1 0.000 0.934 1.000 0 0.000
#> SRR1643389 1 0.000 0.934 1.000 0 0.000
#> SRR1643390 1 0.418 0.880 0.828 0 0.172
#> SRR1643391 1 0.418 0.880 0.828 0 0.172
#> SRR1643392 1 0.418 0.880 0.828 0 0.172
#> SRR1643393 1 0.418 0.880 0.828 0 0.172
#> SRR1643394 1 0.418 0.880 0.828 0 0.172
#> SRR1643395 1 0.418 0.880 0.828 0 0.172
#> SRR1643396 1 0.418 0.880 0.828 0 0.172
#> SRR1643397 1 0.418 0.880 0.828 0 0.172
#> SRR1643398 1 0.418 0.880 0.828 0 0.172
#> SRR1643399 1 0.418 0.880 0.828 0 0.172
#> SRR1643400 1 0.418 0.880 0.828 0 0.172
#> SRR1643401 1 0.418 0.880 0.828 0 0.172
#> SRR1643402 1 0.418 0.880 0.828 0 0.172
#> SRR1643403 1 0.418 0.880 0.828 0 0.172
#> SRR1643404 1 0.418 0.880 0.828 0 0.172
#> SRR1643405 1 0.418 0.880 0.828 0 0.172
#> SRR1643406 1 0.418 0.880 0.828 0 0.172
#> SRR1643407 1 0.418 0.880 0.828 0 0.172
#> SRR1643408 1 0.418 0.880 0.828 0 0.172
#> SRR1643409 1 0.418 0.880 0.828 0 0.172
#> SRR1643410 1 0.418 0.880 0.828 0 0.172
#> SRR1643411 1 0.418 0.880 0.828 0 0.172
#> SRR1643412 1 0.418 0.880 0.828 0 0.172
#> SRR1643413 1 0.418 0.880 0.828 0 0.172
#> SRR1643414 1 0.418 0.880 0.828 0 0.172
#> SRR1643415 1 0.418 0.880 0.828 0 0.172
#> SRR1643416 1 0.418 0.880 0.828 0 0.172
#> SRR1643417 1 0.418 0.880 0.828 0 0.172
#> SRR1643418 1 0.000 0.934 1.000 0 0.000
#> SRR1643419 1 0.000 0.934 1.000 0 0.000
#> SRR1643420 1 0.000 0.934 1.000 0 0.000
#> SRR1643421 1 0.000 0.934 1.000 0 0.000
#> SRR1643422 1 0.000 0.934 1.000 0 0.000
#> SRR1643423 1 0.000 0.934 1.000 0 0.000
#> SRR1643424 1 0.000 0.934 1.000 0 0.000
#> SRR1643425 1 0.000 0.934 1.000 0 0.000
#> SRR1643426 1 0.000 0.934 1.000 0 0.000
#> SRR1643427 1 0.000 0.934 1.000 0 0.000
#> SRR1643428 1 0.000 0.934 1.000 0 0.000
#> SRR1643429 1 0.000 0.934 1.000 0 0.000
#> SRR1643430 1 0.000 0.934 1.000 0 0.000
#> SRR1643431 1 0.000 0.934 1.000 0 0.000
#> SRR1643432 1 0.000 0.934 1.000 0 0.000
#> SRR1643433 1 0.000 0.934 1.000 0 0.000
#> SRR1643434 1 0.000 0.934 1.000 0 0.000
#> SRR1643435 1 0.000 0.934 1.000 0 0.000
#> SRR1643436 1 0.000 0.934 1.000 0 0.000
#> SRR1643437 1 0.000 0.934 1.000 0 0.000
#> SRR1643438 1 0.000 0.934 1.000 0 0.000
#> SRR1643439 1 0.000 0.934 1.000 0 0.000
#> SRR1643440 1 0.000 0.934 1.000 0 0.000
#> SRR1643441 1 0.000 0.934 1.000 0 0.000
#> SRR1643442 1 0.000 0.934 1.000 0 0.000
#> SRR1643443 2 0.000 1.000 0.000 1 0.000
#> SRR1643444 2 0.000 1.000 0.000 1 0.000
#> SRR1643445 2 0.000 1.000 0.000 1 0.000
#> SRR1643446 2 0.000 1.000 0.000 1 0.000
#> SRR1643447 2 0.000 1.000 0.000 1 0.000
#> SRR1643448 2 0.000 1.000 0.000 1 0.000
#> SRR1643449 2 0.000 1.000 0.000 1 0.000
#> SRR1643450 2 0.000 1.000 0.000 1 0.000
#> SRR1643451 2 0.000 1.000 0.000 1 0.000
#> SRR1643452 2 0.000 1.000 0.000 1 0.000
#> SRR1643453 2 0.000 1.000 0.000 1 0.000
#> SRR1643454 2 0.000 1.000 0.000 1 0.000
#> SRR1643455 2 0.000 1.000 0.000 1 0.000
#> SRR1643456 2 0.000 1.000 0.000 1 0.000
#> SRR1643457 2 0.000 1.000 0.000 1 0.000
#> SRR1643458 2 0.000 1.000 0.000 1 0.000
#> SRR1643459 2 0.000 1.000 0.000 1 0.000
#> SRR1643460 2 0.000 1.000 0.000 1 0.000
#> SRR1643461 2 0.000 1.000 0.000 1 0.000
#> SRR1643462 2 0.000 1.000 0.000 1 0.000
#> SRR1643463 2 0.000 1.000 0.000 1 0.000
#> SRR1643464 2 0.000 1.000 0.000 1 0.000
#> SRR1643466 2 0.000 1.000 0.000 1 0.000
#> SRR1643467 2 0.000 1.000 0.000 1 0.000
#> SRR1643468 2 0.000 1.000 0.000 1 0.000
#> SRR1643469 2 0.000 1.000 0.000 1 0.000
#> SRR1643470 2 0.000 1.000 0.000 1 0.000
#> SRR1643471 2 0.000 1.000 0.000 1 0.000
#> SRR1643472 2 0.000 1.000 0.000 1 0.000
#> SRR1643473 2 0.000 1.000 0.000 1 0.000
#> SRR1643474 2 0.000 1.000 0.000 1 0.000
#> SRR1643475 2 0.000 1.000 0.000 1 0.000
#> SRR1643477 2 0.000 1.000 0.000 1 0.000
#> SRR1643478 2 0.000 1.000 0.000 1 0.000
#> SRR1643479 2 0.000 1.000 0.000 1 0.000
#> SRR1643480 2 0.000 1.000 0.000 1 0.000
#> SRR1643481 2 0.000 1.000 0.000 1 0.000
#> SRR1643482 2 0.000 1.000 0.000 1 0.000
#> SRR1643483 2 0.000 1.000 0.000 1 0.000
#> SRR1643484 2 0.000 1.000 0.000 1 0.000
#> SRR1643485 2 0.000 1.000 0.000 1 0.000
#> SRR1643486 2 0.000 1.000 0.000 1 0.000
#> SRR1643487 2 0.000 1.000 0.000 1 0.000
#> SRR1643488 2 0.000 1.000 0.000 1 0.000
#> SRR1643489 2 0.000 1.000 0.000 1 0.000
#> SRR1643490 2 0.000 1.000 0.000 1 0.000
#> SRR1643491 2 0.000 1.000 0.000 1 0.000
#> SRR1643492 2 0.000 1.000 0.000 1 0.000
#> SRR1643493 2 0.000 1.000 0.000 1 0.000
#> SRR1643494 2 0.000 1.000 0.000 1 0.000
#> SRR1643495 2 0.000 1.000 0.000 1 0.000
#> SRR1643496 2 0.000 1.000 0.000 1 0.000
#> SRR1643497 2 0.000 1.000 0.000 1 0.000
#> SRR1643498 2 0.000 1.000 0.000 1 0.000
#> SRR1643499 2 0.000 1.000 0.000 1 0.000
#> SRR1643500 2 0.000 1.000 0.000 1 0.000
#> SRR1643501 2 0.000 1.000 0.000 1 0.000
#> SRR1643502 2 0.000 1.000 0.000 1 0.000
#> SRR1643503 2 0.000 1.000 0.000 1 0.000
#> SRR1643504 2 0.000 1.000 0.000 1 0.000
#> SRR1643505 2 0.000 1.000 0.000 1 0.000
#> SRR1643506 2 0.000 1.000 0.000 1 0.000
#> SRR1643507 2 0.000 1.000 0.000 1 0.000
#> SRR1643508 2 0.000 1.000 0.000 1 0.000
#> SRR1643509 2 0.000 1.000 0.000 1 0.000
#> SRR1643510 2 0.000 1.000 0.000 1 0.000
#> SRR1643511 2 0.000 1.000 0.000 1 0.000
#> SRR1643512 2 0.000 1.000 0.000 1 0.000
#> SRR1643513 2 0.000 1.000 0.000 1 0.000
#> SRR1643531 2 0.000 1.000 0.000 1 0.000
#> SRR1643532 2 0.000 1.000 0.000 1 0.000
#> SRR1643533 2 0.000 1.000 0.000 1 0.000
#> SRR1643534 2 0.000 1.000 0.000 1 0.000
#> SRR1643535 2 0.000 1.000 0.000 1 0.000
#> SRR1643536 2 0.000 1.000 0.000 1 0.000
#> SRR1643537 2 0.000 1.000 0.000 1 0.000
#> SRR1643538 2 0.000 1.000 0.000 1 0.000
#> SRR1643539 2 0.000 1.000 0.000 1 0.000
#> SRR1643540 2 0.000 1.000 0.000 1 0.000
#> SRR1643541 2 0.000 1.000 0.000 1 0.000
#> SRR1643542 2 0.000 1.000 0.000 1 0.000
#> SRR1643543 2 0.000 1.000 0.000 1 0.000
#> SRR1643544 2 0.000 1.000 0.000 1 0.000
#> SRR1643514 2 0.000 1.000 0.000 1 0.000
#> SRR1643515 2 0.000 1.000 0.000 1 0.000
#> SRR1643516 2 0.000 1.000 0.000 1 0.000
#> SRR1643517 2 0.000 1.000 0.000 1 0.000
#> SRR1643518 2 0.000 1.000 0.000 1 0.000
#> SRR1643519 2 0.000 1.000 0.000 1 0.000
#> SRR1643520 2 0.000 1.000 0.000 1 0.000
#> SRR1643521 2 0.000 1.000 0.000 1 0.000
#> SRR1643522 2 0.000 1.000 0.000 1 0.000
#> SRR1643523 2 0.000 1.000 0.000 1 0.000
#> SRR1643524 2 0.000 1.000 0.000 1 0.000
#> SRR1643525 2 0.000 1.000 0.000 1 0.000
#> SRR1643526 2 0.000 1.000 0.000 1 0.000
#> SRR1643527 2 0.000 1.000 0.000 1 0.000
#> SRR1643528 2 0.000 1.000 0.000 1 0.000
#> SRR1643529 2 0.000 1.000 0.000 1 0.000
#> SRR1643530 2 0.000 1.000 0.000 1 0.000
#> SRR1643545 2 0.000 1.000 0.000 1 0.000
#> SRR1643546 2 0.000 1.000 0.000 1 0.000
#> SRR1643547 2 0.000 1.000 0.000 1 0.000
#> SRR1643548 2 0.000 1.000 0.000 1 0.000
#> SRR1643549 2 0.000 1.000 0.000 1 0.000
#> SRR1643550 2 0.000 1.000 0.000 1 0.000
#> SRR1643551 2 0.000 1.000 0.000 1 0.000
#> SRR1643552 2 0.000 1.000 0.000 1 0.000
#> SRR1643553 2 0.000 1.000 0.000 1 0.000
#> SRR1643554 2 0.000 1.000 0.000 1 0.000
#> SRR1643555 2 0.000 1.000 0.000 1 0.000
#> SRR1643556 2 0.000 1.000 0.000 1 0.000
#> SRR1643558 2 0.000 1.000 0.000 1 0.000
#> SRR1643559 2 0.000 1.000 0.000 1 0.000
#> SRR1643560 2 0.000 1.000 0.000 1 0.000
#> SRR1643561 2 0.000 1.000 0.000 1 0.000
#> SRR1643562 2 0.000 1.000 0.000 1 0.000
#> SRR1643563 2 0.000 1.000 0.000 1 0.000
#> SRR1643564 2 0.000 1.000 0.000 1 0.000
#> SRR1643565 2 0.000 1.000 0.000 1 0.000
#> SRR1643566 2 0.000 1.000 0.000 1 0.000
#> SRR1643567 2 0.000 1.000 0.000 1 0.000
#> SRR1643568 2 0.000 1.000 0.000 1 0.000
#> SRR1643569 2 0.000 1.000 0.000 1 0.000
#> SRR1643570 2 0.000 1.000 0.000 1 0.000
#> SRR1643571 2 0.000 1.000 0.000 1 0.000
#> SRR1643572 2 0.000 1.000 0.000 1 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.0524 0.938 0.988 0.000 0.004 0.008
#> SRR1643168 1 0.0524 0.938 0.988 0.000 0.004 0.008
#> SRR1643169 1 0.0524 0.938 0.988 0.000 0.004 0.008
#> SRR1643170 1 0.0524 0.938 0.988 0.000 0.004 0.008
#> SRR1643171 1 0.0524 0.938 0.988 0.000 0.004 0.008
#> SRR1643172 1 0.0524 0.938 0.988 0.000 0.004 0.008
#> SRR1643173 1 0.0524 0.938 0.988 0.000 0.004 0.008
#> SRR1643174 1 0.0524 0.938 0.988 0.000 0.004 0.008
#> SRR1643175 1 0.0336 0.938 0.992 0.000 0.000 0.008
#> SRR1643176 1 0.0336 0.938 0.992 0.000 0.000 0.008
#> SRR1643177 1 0.0336 0.938 0.992 0.000 0.000 0.008
#> SRR1643178 1 0.0336 0.938 0.992 0.000 0.000 0.008
#> SRR1643180 1 0.0524 0.938 0.988 0.000 0.004 0.008
#> SRR1643181 1 0.0524 0.938 0.988 0.000 0.004 0.008
#> SRR1643182 1 0.0524 0.938 0.988 0.000 0.004 0.008
#> SRR1643183 1 0.0524 0.938 0.988 0.000 0.004 0.008
#> SRR1643184 1 0.0524 0.938 0.988 0.000 0.004 0.008
#> SRR1643185 1 0.0524 0.938 0.988 0.000 0.004 0.008
#> SRR1643186 1 0.0524 0.938 0.988 0.000 0.004 0.008
#> SRR1643187 1 0.0336 0.938 0.992 0.000 0.000 0.008
#> SRR1643188 1 0.0336 0.938 0.992 0.000 0.000 0.008
#> SRR1643189 1 0.0336 0.938 0.992 0.000 0.000 0.008
#> SRR1643190 1 0.0336 0.938 0.992 0.000 0.000 0.008
#> SRR1643191 1 0.0524 0.938 0.988 0.000 0.004 0.008
#> SRR1643192 1 0.0524 0.938 0.988 0.000 0.004 0.008
#> SRR1643193 1 0.0336 0.938 0.992 0.000 0.000 0.008
#> SRR1643194 1 0.0336 0.938 0.992 0.000 0.000 0.008
#> SRR1643195 4 0.2216 0.874 0.092 0.000 0.000 0.908
#> SRR1643196 4 0.2216 0.874 0.092 0.000 0.000 0.908
#> SRR1643197 1 0.0336 0.938 0.992 0.000 0.000 0.008
#> SRR1643198 1 0.0336 0.938 0.992 0.000 0.000 0.008
#> SRR1643199 1 0.0524 0.938 0.988 0.000 0.004 0.008
#> SRR1643200 1 0.0524 0.938 0.988 0.000 0.004 0.008
#> SRR1643201 1 0.0336 0.938 0.992 0.000 0.000 0.008
#> SRR1643202 1 0.0336 0.938 0.992 0.000 0.000 0.008
#> SRR1643203 1 0.0336 0.938 0.992 0.000 0.000 0.008
#> SRR1643204 1 0.0336 0.938 0.992 0.000 0.000 0.008
#> SRR1643205 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643206 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643207 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643208 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643209 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643210 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643211 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643212 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643213 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643214 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643215 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643216 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643217 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643218 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643219 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643220 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643221 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643222 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643223 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643224 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643225 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643226 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643227 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643228 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643229 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643230 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643231 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643232 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643233 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643234 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643235 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643236 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643237 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643238 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643239 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643240 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643241 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643242 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643243 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643245 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643246 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643247 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643248 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643249 3 0.0000 1.000 0.000 0.000 1.000 0.000
#> SRR1643250 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643251 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643252 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643253 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643254 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643255 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643256 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643257 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643258 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643259 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643260 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643261 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643262 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643263 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643264 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643266 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643267 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643268 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643269 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643270 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643271 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643272 4 0.1022 0.921 0.032 0.000 0.000 0.968
#> SRR1643273 1 0.3907 0.734 0.768 0.000 0.000 0.232
#> SRR1643274 1 0.3907 0.734 0.768 0.000 0.000 0.232
#> SRR1643275 1 0.3907 0.734 0.768 0.000 0.000 0.232
#> SRR1643276 1 0.3907 0.734 0.768 0.000 0.000 0.232
#> SRR1643277 1 0.3907 0.734 0.768 0.000 0.000 0.232
#> SRR1643278 1 0.3907 0.734 0.768 0.000 0.000 0.232
#> SRR1643279 1 0.3907 0.734 0.768 0.000 0.000 0.232
#> SRR1643280 1 0.3907 0.734 0.768 0.000 0.000 0.232
#> SRR1643281 1 0.3907 0.734 0.768 0.000 0.000 0.232
#> SRR1643282 1 0.3907 0.734 0.768 0.000 0.000 0.232
#> SRR1643283 1 0.3907 0.734 0.768 0.000 0.000 0.232
#> SRR1643284 1 0.3907 0.734 0.768 0.000 0.000 0.232
#> SRR1643285 1 0.3907 0.734 0.768 0.000 0.000 0.232
#> SRR1643286 1 0.3907 0.734 0.768 0.000 0.000 0.232
#> SRR1643287 4 0.0817 0.916 0.024 0.000 0.000 0.976
#> SRR1643288 4 0.0817 0.916 0.024 0.000 0.000 0.976
#> SRR1643289 4 0.0817 0.916 0.024 0.000 0.000 0.976
#> SRR1643290 4 0.0817 0.916 0.024 0.000 0.000 0.976
#> SRR1643291 4 0.0817 0.916 0.024 0.000 0.000 0.976
#> SRR1643292 4 0.0817 0.916 0.024 0.000 0.000 0.976
#> SRR1643293 4 0.0817 0.916 0.024 0.000 0.000 0.976
#> SRR1643294 4 0.0817 0.916 0.024 0.000 0.000 0.976
#> SRR1643295 4 0.0817 0.916 0.024 0.000 0.000 0.976
#> SRR1643296 4 0.0817 0.916 0.024 0.000 0.000 0.976
#> SRR1643297 4 0.0817 0.916 0.024 0.000 0.000 0.976
#> SRR1643298 4 0.0817 0.916 0.024 0.000 0.000 0.976
#> SRR1643299 4 0.0817 0.916 0.024 0.000 0.000 0.976
#> SRR1643300 4 0.0817 0.916 0.024 0.000 0.000 0.976
#> SRR1643301 4 0.4989 0.131 0.472 0.000 0.000 0.528
#> SRR1643302 4 0.4989 0.131 0.472 0.000 0.000 0.528
#> SRR1643303 4 0.4989 0.131 0.472 0.000 0.000 0.528
#> SRR1643304 4 0.4989 0.131 0.472 0.000 0.000 0.528
#> SRR1643305 4 0.4989 0.131 0.472 0.000 0.000 0.528
#> SRR1643306 4 0.4989 0.131 0.472 0.000 0.000 0.528
#> SRR1643307 4 0.4989 0.131 0.472 0.000 0.000 0.528
#> SRR1643308 4 0.4989 0.131 0.472 0.000 0.000 0.528
#> SRR1643309 4 0.4989 0.131 0.472 0.000 0.000 0.528
#> SRR1643310 4 0.4989 0.131 0.472 0.000 0.000 0.528
#> SRR1643311 4 0.4989 0.131 0.472 0.000 0.000 0.528
#> SRR1643312 4 0.4989 0.131 0.472 0.000 0.000 0.528
#> SRR1643313 4 0.4989 0.131 0.472 0.000 0.000 0.528
#> SRR1643314 1 0.1302 0.941 0.956 0.000 0.000 0.044
#> SRR1643315 1 0.1302 0.941 0.956 0.000 0.000 0.044
#> SRR1643316 1 0.1302 0.941 0.956 0.000 0.000 0.044
#> SRR1643317 1 0.1302 0.941 0.956 0.000 0.000 0.044
#> SRR1643318 1 0.1302 0.941 0.956 0.000 0.000 0.044
#> SRR1643319 1 0.1302 0.941 0.956 0.000 0.000 0.044
#> SRR1643320 1 0.1302 0.941 0.956 0.000 0.000 0.044
#> SRR1643321 1 0.1302 0.941 0.956 0.000 0.000 0.044
#> SRR1643322 1 0.1302 0.941 0.956 0.000 0.000 0.044
#> SRR1643323 1 0.1302 0.941 0.956 0.000 0.000 0.044
#> SRR1643324 1 0.1302 0.941 0.956 0.000 0.000 0.044
#> SRR1643325 1 0.1302 0.941 0.956 0.000 0.000 0.044
#> SRR1643326 1 0.1302 0.941 0.956 0.000 0.000 0.044
#> SRR1643327 1 0.1302 0.941 0.956 0.000 0.000 0.044
#> SRR1643328 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643329 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643330 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643331 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643332 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643333 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643334 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643335 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643336 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643337 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643338 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643339 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643340 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643341 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643342 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643343 1 0.2329 0.924 0.916 0.000 0.012 0.072
#> SRR1643344 1 0.2329 0.924 0.916 0.000 0.012 0.072
#> SRR1643345 1 0.2329 0.924 0.916 0.000 0.012 0.072
#> SRR1643346 1 0.2329 0.924 0.916 0.000 0.012 0.072
#> SRR1643347 1 0.2329 0.924 0.916 0.000 0.012 0.072
#> SRR1643348 1 0.2329 0.924 0.916 0.000 0.012 0.072
#> SRR1643349 1 0.2329 0.924 0.916 0.000 0.012 0.072
#> SRR1643350 1 0.2329 0.924 0.916 0.000 0.012 0.072
#> SRR1643351 1 0.2329 0.924 0.916 0.000 0.012 0.072
#> SRR1643352 1 0.2329 0.924 0.916 0.000 0.012 0.072
#> SRR1643353 1 0.2329 0.924 0.916 0.000 0.012 0.072
#> SRR1643354 1 0.2329 0.924 0.916 0.000 0.012 0.072
#> SRR1643355 1 0.2329 0.924 0.916 0.000 0.012 0.072
#> SRR1643356 1 0.2329 0.924 0.916 0.000 0.012 0.072
#> SRR1643357 1 0.2329 0.924 0.916 0.000 0.012 0.072
#> SRR1643358 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643359 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643360 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643361 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643362 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643363 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643364 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643365 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643366 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643367 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643368 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643369 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643370 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643371 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643372 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643373 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643374 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643375 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643376 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643377 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643378 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643379 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643380 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643381 4 0.0817 0.921 0.024 0.000 0.000 0.976
#> SRR1643382 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643383 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643384 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643385 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643386 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643387 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643388 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643389 4 0.0921 0.922 0.028 0.000 0.000 0.972
#> SRR1643390 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643391 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643392 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643393 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643394 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643395 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643396 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643397 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643398 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643399 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643400 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643401 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643402 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643403 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643404 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643405 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643406 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643407 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643408 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643409 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643410 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643411 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643412 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643413 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643414 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643415 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643416 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643417 1 0.1724 0.945 0.948 0.000 0.032 0.020
#> SRR1643418 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643419 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643420 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643421 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643422 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643423 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643424 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643425 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643426 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643427 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643428 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643429 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643430 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643431 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643432 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643433 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643434 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643435 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643436 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643437 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643438 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643439 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643440 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643441 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643442 4 0.0336 0.915 0.008 0.000 0.000 0.992
#> SRR1643443 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643444 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643445 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643446 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643447 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643448 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643449 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643450 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643451 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643452 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643453 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643454 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643455 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643456 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643457 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643458 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643459 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643460 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643461 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643462 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643463 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643464 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643466 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643467 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643468 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643469 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643470 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643471 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643472 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643473 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643474 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643475 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643477 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643478 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643479 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643480 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643481 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643482 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643483 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643484 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643485 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643486 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643487 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643488 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643489 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643490 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643491 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643492 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643493 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643494 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643495 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643496 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643497 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643498 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643499 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643500 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643501 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643502 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643503 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643504 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643505 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643506 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643507 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643508 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643509 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643510 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643511 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643512 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643513 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643531 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643532 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643533 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643534 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643535 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643536 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643537 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643538 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643539 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643540 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643541 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643542 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643543 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643544 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643514 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643515 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643516 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643517 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643518 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643519 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643520 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643521 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643522 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643523 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643524 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643525 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643526 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643527 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643528 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643529 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643530 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643545 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643546 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643547 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643548 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643549 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643550 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643551 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643552 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643553 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643554 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643555 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643556 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643558 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643559 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643560 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643561 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643562 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643563 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643564 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643565 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643566 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643567 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643568 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643569 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643570 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643571 2 0.0336 0.996 0.000 0.992 0.000 0.008
#> SRR1643572 2 0.0336 0.996 0.000 0.992 0.000 0.008
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643168 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643169 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643170 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643171 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643172 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643173 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643174 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643175 1 0.2358 0.4789 0.888 0.000 0 0.008 0.104
#> SRR1643176 1 0.2358 0.4789 0.888 0.000 0 0.008 0.104
#> SRR1643177 1 0.2358 0.4789 0.888 0.000 0 0.008 0.104
#> SRR1643178 1 0.2358 0.4789 0.888 0.000 0 0.008 0.104
#> SRR1643180 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643181 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643182 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643183 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643184 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643185 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643186 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643187 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643188 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643189 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643190 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643191 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643192 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643193 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643194 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643195 1 0.5378 -0.0988 0.548 0.000 0 0.392 0.060
#> SRR1643196 1 0.5378 -0.0988 0.548 0.000 0 0.392 0.060
#> SRR1643197 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643198 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643199 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643200 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643201 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643202 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643203 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643204 1 0.0000 0.5732 1.000 0.000 0 0.000 0.000
#> SRR1643205 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643206 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643207 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643208 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643209 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643210 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643211 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643212 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643213 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643214 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643215 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643216 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643217 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643218 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643219 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643220 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643221 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643222 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643223 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643224 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643225 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643226 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643227 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643228 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643229 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643230 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643231 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643232 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643233 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643234 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643235 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643236 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643237 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643238 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643239 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643240 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643241 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643242 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643243 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643245 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643246 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643247 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643248 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643249 3 0.0000 1.0000 0.000 0.000 1 0.000 0.000
#> SRR1643250 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643251 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643252 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643253 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643254 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643255 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643256 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643257 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643258 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643259 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643260 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643261 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643262 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643263 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643264 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643266 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643267 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643268 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643269 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643270 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643271 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643272 4 0.2136 0.8025 0.008 0.000 0 0.904 0.088
#> SRR1643273 5 0.5973 0.4889 0.164 0.000 0 0.256 0.580
#> SRR1643274 5 0.5973 0.4889 0.164 0.000 0 0.256 0.580
#> SRR1643275 5 0.5973 0.4889 0.164 0.000 0 0.256 0.580
#> SRR1643276 5 0.5973 0.4889 0.164 0.000 0 0.256 0.580
#> SRR1643277 5 0.5973 0.4889 0.164 0.000 0 0.256 0.580
#> SRR1643278 5 0.5973 0.4889 0.164 0.000 0 0.256 0.580
#> SRR1643279 5 0.5973 0.4889 0.164 0.000 0 0.256 0.580
#> SRR1643280 5 0.5973 0.4889 0.164 0.000 0 0.256 0.580
#> SRR1643281 5 0.5973 0.4889 0.164 0.000 0 0.256 0.580
#> SRR1643282 5 0.5973 0.4889 0.164 0.000 0 0.256 0.580
#> SRR1643283 5 0.5973 0.4889 0.164 0.000 0 0.256 0.580
#> SRR1643284 5 0.5973 0.4889 0.164 0.000 0 0.256 0.580
#> SRR1643285 5 0.5973 0.4889 0.164 0.000 0 0.256 0.580
#> SRR1643286 5 0.5973 0.4889 0.164 0.000 0 0.256 0.580
#> SRR1643287 4 0.4088 0.5932 0.000 0.000 0 0.632 0.368
#> SRR1643288 4 0.4088 0.5932 0.000 0.000 0 0.632 0.368
#> SRR1643289 4 0.4088 0.5932 0.000 0.000 0 0.632 0.368
#> SRR1643290 4 0.4088 0.5932 0.000 0.000 0 0.632 0.368
#> SRR1643291 4 0.4088 0.5932 0.000 0.000 0 0.632 0.368
#> SRR1643292 4 0.4088 0.5932 0.000 0.000 0 0.632 0.368
#> SRR1643293 4 0.4088 0.5932 0.000 0.000 0 0.632 0.368
#> SRR1643294 4 0.4088 0.5932 0.000 0.000 0 0.632 0.368
#> SRR1643295 4 0.4088 0.5932 0.000 0.000 0 0.632 0.368
#> SRR1643296 4 0.4088 0.5932 0.000 0.000 0 0.632 0.368
#> SRR1643297 4 0.4088 0.5932 0.000 0.000 0 0.632 0.368
#> SRR1643298 4 0.4088 0.5932 0.000 0.000 0 0.632 0.368
#> SRR1643299 4 0.4088 0.5932 0.000 0.000 0 0.632 0.368
#> SRR1643300 4 0.4088 0.5932 0.000 0.000 0 0.632 0.368
#> SRR1643301 4 0.6557 -0.1463 0.204 0.000 0 0.428 0.368
#> SRR1643302 4 0.6557 -0.1463 0.204 0.000 0 0.428 0.368
#> SRR1643303 4 0.6557 -0.1463 0.204 0.000 0 0.428 0.368
#> SRR1643304 4 0.6557 -0.1463 0.204 0.000 0 0.428 0.368
#> SRR1643305 4 0.6557 -0.1463 0.204 0.000 0 0.428 0.368
#> SRR1643306 4 0.6557 -0.1463 0.204 0.000 0 0.428 0.368
#> SRR1643307 4 0.6557 -0.1463 0.204 0.000 0 0.428 0.368
#> SRR1643308 4 0.6557 -0.1463 0.204 0.000 0 0.428 0.368
#> SRR1643309 4 0.6557 -0.1463 0.204 0.000 0 0.428 0.368
#> SRR1643310 4 0.6557 -0.1463 0.204 0.000 0 0.428 0.368
#> SRR1643311 4 0.6557 -0.1463 0.204 0.000 0 0.428 0.368
#> SRR1643312 4 0.6557 -0.1463 0.204 0.000 0 0.428 0.368
#> SRR1643313 4 0.6557 -0.1463 0.204 0.000 0 0.428 0.368
#> SRR1643314 5 0.5230 0.3557 0.452 0.000 0 0.044 0.504
#> SRR1643315 5 0.5230 0.3557 0.452 0.000 0 0.044 0.504
#> SRR1643316 5 0.5230 0.3557 0.452 0.000 0 0.044 0.504
#> SRR1643317 5 0.5230 0.3557 0.452 0.000 0 0.044 0.504
#> SRR1643318 5 0.5230 0.3557 0.452 0.000 0 0.044 0.504
#> SRR1643319 5 0.5230 0.3557 0.452 0.000 0 0.044 0.504
#> SRR1643320 5 0.5230 0.3557 0.452 0.000 0 0.044 0.504
#> SRR1643321 5 0.5230 0.3557 0.452 0.000 0 0.044 0.504
#> SRR1643322 5 0.5230 0.3557 0.452 0.000 0 0.044 0.504
#> SRR1643323 5 0.5230 0.3557 0.452 0.000 0 0.044 0.504
#> SRR1643324 5 0.5230 0.3557 0.452 0.000 0 0.044 0.504
#> SRR1643325 5 0.5230 0.3557 0.452 0.000 0 0.044 0.504
#> SRR1643326 5 0.5230 0.3557 0.452 0.000 0 0.044 0.504
#> SRR1643327 5 0.5230 0.3557 0.452 0.000 0 0.044 0.504
#> SRR1643328 1 0.4256 0.2016 0.564 0.000 0 0.000 0.436
#> SRR1643329 1 0.4256 0.2016 0.564 0.000 0 0.000 0.436
#> SRR1643330 1 0.4256 0.2016 0.564 0.000 0 0.000 0.436
#> SRR1643331 1 0.4256 0.2016 0.564 0.000 0 0.000 0.436
#> SRR1643332 1 0.4256 0.2016 0.564 0.000 0 0.000 0.436
#> SRR1643333 1 0.4256 0.2016 0.564 0.000 0 0.000 0.436
#> SRR1643334 1 0.4256 0.2016 0.564 0.000 0 0.000 0.436
#> SRR1643335 1 0.4256 0.2016 0.564 0.000 0 0.000 0.436
#> SRR1643336 1 0.4256 0.2016 0.564 0.000 0 0.000 0.436
#> SRR1643337 1 0.4256 0.2016 0.564 0.000 0 0.000 0.436
#> SRR1643338 1 0.4256 0.2016 0.564 0.000 0 0.000 0.436
#> SRR1643339 1 0.4256 0.2016 0.564 0.000 0 0.000 0.436
#> SRR1643340 1 0.4256 0.2016 0.564 0.000 0 0.000 0.436
#> SRR1643341 1 0.4256 0.2016 0.564 0.000 0 0.000 0.436
#> SRR1643342 1 0.4256 0.2016 0.564 0.000 0 0.000 0.436
#> SRR1643343 5 0.5037 0.5502 0.228 0.000 0 0.088 0.684
#> SRR1643344 5 0.5037 0.5502 0.228 0.000 0 0.088 0.684
#> SRR1643345 5 0.5037 0.5502 0.228 0.000 0 0.088 0.684
#> SRR1643346 5 0.5037 0.5502 0.228 0.000 0 0.088 0.684
#> SRR1643347 5 0.5037 0.5502 0.228 0.000 0 0.088 0.684
#> SRR1643348 5 0.5037 0.5502 0.228 0.000 0 0.088 0.684
#> SRR1643349 5 0.5037 0.5502 0.228 0.000 0 0.088 0.684
#> SRR1643350 5 0.5037 0.5502 0.228 0.000 0 0.088 0.684
#> SRR1643351 5 0.5037 0.5502 0.228 0.000 0 0.088 0.684
#> SRR1643352 5 0.5037 0.5502 0.228 0.000 0 0.088 0.684
#> SRR1643353 5 0.5037 0.5502 0.228 0.000 0 0.088 0.684
#> SRR1643354 5 0.5037 0.5502 0.228 0.000 0 0.088 0.684
#> SRR1643355 5 0.5037 0.5502 0.228 0.000 0 0.088 0.684
#> SRR1643356 5 0.5037 0.5502 0.228 0.000 0 0.088 0.684
#> SRR1643357 5 0.5037 0.5502 0.228 0.000 0 0.088 0.684
#> SRR1643358 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643359 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643360 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643361 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643362 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643363 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643364 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643365 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643366 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643367 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643368 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643369 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643370 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643371 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643372 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643373 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643374 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643375 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643376 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643377 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643378 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643379 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643380 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643381 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643382 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643383 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643384 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643385 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643386 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643387 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643388 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643389 4 0.0898 0.8170 0.008 0.000 0 0.972 0.020
#> SRR1643390 1 0.4294 0.1791 0.532 0.000 0 0.000 0.468
#> SRR1643391 1 0.4294 0.1791 0.532 0.000 0 0.000 0.468
#> SRR1643392 1 0.4294 0.1791 0.532 0.000 0 0.000 0.468
#> SRR1643393 1 0.4294 0.1791 0.532 0.000 0 0.000 0.468
#> SRR1643394 1 0.4294 0.1791 0.532 0.000 0 0.000 0.468
#> SRR1643395 1 0.4294 0.1791 0.532 0.000 0 0.000 0.468
#> SRR1643396 1 0.4294 0.1791 0.532 0.000 0 0.000 0.468
#> SRR1643397 1 0.4294 0.1791 0.532 0.000 0 0.000 0.468
#> SRR1643398 1 0.4294 0.1791 0.532 0.000 0 0.000 0.468
#> SRR1643399 1 0.4294 0.1791 0.532 0.000 0 0.000 0.468
#> SRR1643400 1 0.4294 0.1791 0.532 0.000 0 0.000 0.468
#> SRR1643401 1 0.4294 0.1791 0.532 0.000 0 0.000 0.468
#> SRR1643402 1 0.4294 0.1791 0.532 0.000 0 0.000 0.468
#> SRR1643403 1 0.4294 0.1791 0.532 0.000 0 0.000 0.468
#> SRR1643404 1 0.4294 0.1791 0.532 0.000 0 0.000 0.468
#> SRR1643405 1 0.4307 0.0937 0.500 0.000 0 0.000 0.500
#> SRR1643406 5 0.4307 -0.1238 0.500 0.000 0 0.000 0.500
#> SRR1643407 5 0.4307 -0.1238 0.500 0.000 0 0.000 0.500
#> SRR1643408 5 0.4307 -0.1238 0.500 0.000 0 0.000 0.500
#> SRR1643409 1 0.4307 0.0937 0.500 0.000 0 0.000 0.500
#> SRR1643410 1 0.4307 0.0937 0.500 0.000 0 0.000 0.500
#> SRR1643411 1 0.4307 0.0937 0.500 0.000 0 0.000 0.500
#> SRR1643412 5 0.4307 -0.1238 0.500 0.000 0 0.000 0.500
#> SRR1643413 5 0.4307 -0.1238 0.500 0.000 0 0.000 0.500
#> SRR1643414 5 0.4307 -0.1238 0.500 0.000 0 0.000 0.500
#> SRR1643415 5 0.4307 -0.1238 0.500 0.000 0 0.000 0.500
#> SRR1643416 1 0.4307 0.0937 0.500 0.000 0 0.000 0.500
#> SRR1643417 5 0.4307 -0.1238 0.500 0.000 0 0.000 0.500
#> SRR1643418 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643419 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643420 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643421 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643422 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643423 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643424 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643425 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643426 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643427 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643428 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643429 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643430 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643431 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643432 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643433 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643434 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643435 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643436 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643437 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643438 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643439 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643440 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643441 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643442 4 0.2377 0.7748 0.000 0.000 0 0.872 0.128
#> SRR1643443 2 0.1121 0.9762 0.000 0.956 0 0.000 0.044
#> SRR1643444 2 0.1121 0.9762 0.000 0.956 0 0.000 0.044
#> SRR1643445 2 0.1121 0.9762 0.000 0.956 0 0.000 0.044
#> SRR1643446 2 0.1121 0.9762 0.000 0.956 0 0.000 0.044
#> SRR1643447 2 0.1121 0.9762 0.000 0.956 0 0.000 0.044
#> SRR1643448 2 0.1121 0.9762 0.000 0.956 0 0.000 0.044
#> SRR1643449 2 0.1121 0.9762 0.000 0.956 0 0.000 0.044
#> SRR1643450 2 0.1121 0.9762 0.000 0.956 0 0.000 0.044
#> SRR1643451 2 0.1121 0.9762 0.000 0.956 0 0.000 0.044
#> SRR1643452 2 0.1121 0.9762 0.000 0.956 0 0.000 0.044
#> SRR1643453 2 0.1121 0.9762 0.000 0.956 0 0.000 0.044
#> SRR1643454 2 0.1121 0.9762 0.000 0.956 0 0.000 0.044
#> SRR1643455 2 0.1121 0.9762 0.000 0.956 0 0.000 0.044
#> SRR1643456 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643457 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643458 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643459 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643460 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643461 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643462 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643463 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643464 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643466 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643467 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643468 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643469 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643470 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643471 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643472 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643473 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643474 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643475 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643477 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643478 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643479 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643480 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643481 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643482 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643483 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643484 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643485 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643486 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643487 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643488 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643489 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643490 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643491 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643492 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643493 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643494 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643495 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643496 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643497 2 0.0290 0.9818 0.000 0.992 0 0.000 0.008
#> SRR1643498 2 0.0290 0.9818 0.000 0.992 0 0.000 0.008
#> SRR1643499 2 0.0290 0.9818 0.000 0.992 0 0.000 0.008
#> SRR1643500 2 0.0290 0.9818 0.000 0.992 0 0.000 0.008
#> SRR1643501 2 0.0290 0.9818 0.000 0.992 0 0.000 0.008
#> SRR1643502 2 0.0290 0.9818 0.000 0.992 0 0.000 0.008
#> SRR1643503 2 0.0290 0.9818 0.000 0.992 0 0.000 0.008
#> SRR1643504 2 0.0290 0.9818 0.000 0.992 0 0.000 0.008
#> SRR1643505 2 0.0290 0.9818 0.000 0.992 0 0.000 0.008
#> SRR1643506 2 0.0290 0.9818 0.000 0.992 0 0.000 0.008
#> SRR1643507 2 0.0290 0.9818 0.000 0.992 0 0.000 0.008
#> SRR1643508 2 0.0290 0.9818 0.000 0.992 0 0.000 0.008
#> SRR1643509 2 0.0290 0.9818 0.000 0.992 0 0.000 0.008
#> SRR1643510 2 0.0290 0.9818 0.000 0.992 0 0.000 0.008
#> SRR1643511 2 0.0290 0.9818 0.000 0.992 0 0.000 0.008
#> SRR1643512 2 0.0290 0.9818 0.000 0.992 0 0.000 0.008
#> SRR1643513 2 0.0290 0.9818 0.000 0.992 0 0.000 0.008
#> SRR1643531 2 0.1043 0.9774 0.000 0.960 0 0.000 0.040
#> SRR1643532 2 0.1043 0.9774 0.000 0.960 0 0.000 0.040
#> SRR1643533 2 0.1043 0.9774 0.000 0.960 0 0.000 0.040
#> SRR1643534 2 0.1043 0.9774 0.000 0.960 0 0.000 0.040
#> SRR1643535 2 0.1043 0.9774 0.000 0.960 0 0.000 0.040
#> SRR1643536 2 0.1043 0.9774 0.000 0.960 0 0.000 0.040
#> SRR1643537 2 0.1043 0.9774 0.000 0.960 0 0.000 0.040
#> SRR1643538 2 0.1043 0.9774 0.000 0.960 0 0.000 0.040
#> SRR1643539 2 0.1043 0.9774 0.000 0.960 0 0.000 0.040
#> SRR1643540 2 0.1043 0.9774 0.000 0.960 0 0.000 0.040
#> SRR1643541 2 0.1043 0.9774 0.000 0.960 0 0.000 0.040
#> SRR1643542 2 0.1043 0.9774 0.000 0.960 0 0.000 0.040
#> SRR1643543 2 0.1043 0.9774 0.000 0.960 0 0.000 0.040
#> SRR1643544 2 0.1043 0.9774 0.000 0.960 0 0.000 0.040
#> SRR1643514 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643515 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643516 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643517 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643518 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643519 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643520 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643521 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643522 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643523 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643524 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643525 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643526 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643527 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643528 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643529 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643530 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643545 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643546 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643547 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643548 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643549 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643550 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643551 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643552 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643553 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643554 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643555 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643556 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643558 2 0.0404 0.9815 0.000 0.988 0 0.000 0.012
#> SRR1643559 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643560 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643561 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643562 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643563 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643564 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643565 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643566 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643567 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643568 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643569 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643570 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643571 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
#> SRR1643572 2 0.0794 0.9807 0.000 0.972 0 0.000 0.028
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643168 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643169 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643170 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643171 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643172 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643173 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643174 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643175 5 0.5026 0.816 0.268 0.000 0.000 0.016 0.640 0.076
#> SRR1643176 5 0.5026 0.816 0.268 0.000 0.000 0.016 0.640 0.076
#> SRR1643177 5 0.5026 0.816 0.268 0.000 0.000 0.016 0.640 0.076
#> SRR1643178 5 0.5026 0.816 0.268 0.000 0.000 0.016 0.640 0.076
#> SRR1643180 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643181 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643182 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643183 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643184 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643185 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643186 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643187 5 0.3690 0.948 0.288 0.000 0.000 0.000 0.700 0.012
#> SRR1643188 5 0.3690 0.948 0.288 0.000 0.000 0.000 0.700 0.012
#> SRR1643189 5 0.3690 0.948 0.288 0.000 0.000 0.000 0.700 0.012
#> SRR1643190 5 0.3690 0.948 0.288 0.000 0.000 0.000 0.700 0.012
#> SRR1643191 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643192 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643193 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643194 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643195 5 0.5429 0.529 0.072 0.000 0.000 0.176 0.668 0.084
#> SRR1643196 5 0.5429 0.529 0.072 0.000 0.000 0.176 0.668 0.084
#> SRR1643197 5 0.3690 0.948 0.288 0.000 0.000 0.000 0.700 0.012
#> SRR1643198 5 0.3690 0.948 0.288 0.000 0.000 0.000 0.700 0.012
#> SRR1643199 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643200 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643201 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643202 5 0.3351 0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643203 5 0.3690 0.948 0.288 0.000 0.000 0.000 0.700 0.012
#> SRR1643204 5 0.3690 0.948 0.288 0.000 0.000 0.000 0.700 0.012
#> SRR1643205 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643206 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643207 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643208 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643209 3 0.0363 0.994 0.000 0.000 0.988 0.000 0.000 0.012
#> SRR1643210 3 0.0363 0.994 0.000 0.000 0.988 0.000 0.000 0.012
#> SRR1643211 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643212 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643213 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643214 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643215 3 0.0363 0.994 0.000 0.000 0.988 0.000 0.000 0.012
#> SRR1643216 3 0.0363 0.994 0.000 0.000 0.988 0.000 0.000 0.012
#> SRR1643217 3 0.0363 0.994 0.000 0.000 0.988 0.000 0.000 0.012
#> SRR1643218 3 0.0363 0.994 0.000 0.000 0.988 0.000 0.000 0.012
#> SRR1643219 3 0.0363 0.994 0.000 0.000 0.988 0.000 0.000 0.012
#> SRR1643220 3 0.0363 0.994 0.000 0.000 0.988 0.000 0.000 0.012
#> SRR1643221 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643222 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643223 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643224 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643225 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643226 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643227 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643228 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643229 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643230 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643231 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643232 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643233 3 0.0508 0.993 0.000 0.000 0.984 0.000 0.004 0.012
#> SRR1643234 3 0.0508 0.993 0.000 0.000 0.984 0.000 0.004 0.012
#> SRR1643235 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643236 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643237 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643238 3 0.0146 0.996 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643239 3 0.0146 0.996 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643240 3 0.0146 0.996 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643241 3 0.0146 0.996 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643242 3 0.0508 0.993 0.000 0.000 0.984 0.000 0.004 0.012
#> SRR1643243 3 0.0508 0.993 0.000 0.000 0.984 0.000 0.004 0.012
#> SRR1643245 3 0.0508 0.993 0.000 0.000 0.984 0.000 0.004 0.012
#> SRR1643246 3 0.0508 0.993 0.000 0.000 0.984 0.000 0.004 0.012
#> SRR1643247 3 0.0508 0.993 0.000 0.000 0.984 0.000 0.004 0.012
#> SRR1643248 3 0.0000 0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643249 3 0.0508 0.993 0.000 0.000 0.984 0.000 0.004 0.012
#> SRR1643250 4 0.3470 0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643251 4 0.3470 0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643252 4 0.3470 0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643253 4 0.3470 0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643254 4 0.3470 0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643255 4 0.3470 0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643256 4 0.3470 0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643257 4 0.3470 0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643258 4 0.3470 0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643259 4 0.3470 0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643260 4 0.3470 0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643261 4 0.3470 0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643262 4 0.3377 0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643263 4 0.3377 0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643264 4 0.3377 0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643266 4 0.3377 0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643267 4 0.3377 0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643268 4 0.3377 0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643269 4 0.3377 0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643270 4 0.3377 0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643271 4 0.3377 0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643272 4 0.3377 0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643273 6 0.6208 0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643274 6 0.6208 0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643275 6 0.6208 0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643276 6 0.6208 0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643277 6 0.6208 0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643278 6 0.6208 0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643279 6 0.6208 0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643280 6 0.6208 0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643281 6 0.6208 0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643282 6 0.6208 0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643283 6 0.6208 0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643284 6 0.6208 0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643285 6 0.6208 0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643286 6 0.6208 0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643287 6 0.4333 0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643288 6 0.4333 0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643289 6 0.4333 0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643290 6 0.4333 0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643291 6 0.4333 0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643292 6 0.4333 0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643293 6 0.4333 0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643294 6 0.4333 0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643295 6 0.4333 0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643296 6 0.4333 0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643297 6 0.4333 0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643298 6 0.4333 0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643299 6 0.4333 0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643300 6 0.4333 0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643301 4 0.7026 -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643302 4 0.7026 -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643303 4 0.7026 -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643304 4 0.7026 -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643305 4 0.7026 -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643306 4 0.7026 -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643307 4 0.7026 -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643308 4 0.7026 -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643309 4 0.7026 -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643310 4 0.7026 -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643311 4 0.7026 -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643312 4 0.7026 -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643313 4 0.7026 -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643314 1 0.5882 0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643315 1 0.5882 0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643316 1 0.5882 0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643317 1 0.5882 0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643318 1 0.5882 0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643319 1 0.5882 0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643320 1 0.5882 0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643321 1 0.5882 0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643322 1 0.5882 0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643323 1 0.5882 0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643324 1 0.5882 0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643325 1 0.5882 0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643326 1 0.5882 0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643327 1 0.5882 0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643328 1 0.2344 0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643329 1 0.2344 0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643330 1 0.2344 0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643331 1 0.2344 0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643332 1 0.2344 0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643333 1 0.2344 0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643334 1 0.2344 0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643335 1 0.2344 0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643336 1 0.2344 0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643337 1 0.2344 0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643338 1 0.2344 0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643339 1 0.2344 0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643340 1 0.2344 0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643341 1 0.2344 0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643342 1 0.2344 0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643343 1 0.5928 0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643344 1 0.5928 0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643345 1 0.5928 0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643346 1 0.5928 0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643347 1 0.5928 0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643348 1 0.5928 0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643349 1 0.5928 0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643350 1 0.5928 0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643351 1 0.5928 0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643352 1 0.5928 0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643353 1 0.5928 0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643354 1 0.5928 0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643355 1 0.5928 0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643356 1 0.5928 0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643357 1 0.5928 0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643358 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643359 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643360 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643361 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643362 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643363 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643364 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643365 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643366 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643367 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643368 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643369 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643370 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643371 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643372 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643373 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643374 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643375 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643376 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643377 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643378 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643379 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643380 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643381 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643382 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643383 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643384 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643385 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643386 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643387 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643388 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643389 4 0.0146 0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643390 1 0.0748 0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643391 1 0.0748 0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643392 1 0.0748 0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643393 1 0.0748 0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643394 1 0.0748 0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643395 1 0.0748 0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643396 1 0.0748 0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643397 1 0.0748 0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643398 1 0.0748 0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643399 1 0.0748 0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643400 1 0.0748 0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643401 1 0.0748 0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643402 1 0.0748 0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643403 1 0.0748 0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643404 1 0.0748 0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643405 1 0.1049 0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643406 1 0.1049 0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643407 1 0.1049 0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643408 1 0.1049 0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643409 1 0.1049 0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643410 1 0.1049 0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643411 1 0.1049 0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643412 1 0.1049 0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643413 1 0.1049 0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643414 1 0.1049 0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643415 1 0.1049 0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643416 1 0.1049 0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643417 1 0.1049 0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643418 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643419 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643420 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643421 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643422 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643423 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643424 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643425 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643426 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643427 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643428 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643429 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643430 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643431 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643432 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643433 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643434 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643435 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643436 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643437 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643438 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643439 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643440 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643441 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643442 4 0.5167 0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643443 2 0.1644 0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643444 2 0.1644 0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643445 2 0.1644 0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643446 2 0.1644 0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643447 2 0.1644 0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643448 2 0.1644 0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643449 2 0.1644 0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643450 2 0.1644 0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643451 2 0.1644 0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643452 2 0.1644 0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643453 2 0.1644 0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643454 2 0.1644 0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643455 2 0.1644 0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643456 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643457 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643458 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643459 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643460 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643461 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643462 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643463 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643464 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643466 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643467 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643468 2 0.0622 0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643469 2 0.0622 0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643470 2 0.0622 0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643471 2 0.0622 0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643472 2 0.0622 0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643473 2 0.0622 0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643474 2 0.0622 0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643475 2 0.0622 0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643477 2 0.0622 0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643478 2 0.0622 0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643479 2 0.0622 0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643480 2 0.0622 0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643481 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643482 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643483 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643484 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643485 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643486 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643487 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643488 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643489 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643490 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643491 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643492 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643493 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643494 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643495 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643496 2 0.0520 0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643497 2 0.0820 0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643498 2 0.0820 0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643499 2 0.0820 0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643500 2 0.0820 0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643501 2 0.0820 0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643502 2 0.0820 0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643503 2 0.0820 0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643504 2 0.0820 0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643505 2 0.0820 0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643506 2 0.0820 0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643507 2 0.0820 0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643508 2 0.0820 0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643509 2 0.0820 0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643510 2 0.0820 0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643511 2 0.0820 0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643512 2 0.0820 0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643513 2 0.0820 0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643531 2 0.1498 0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643532 2 0.1498 0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643533 2 0.1498 0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643534 2 0.1498 0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643535 2 0.1498 0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643536 2 0.1498 0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643537 2 0.1498 0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643538 2 0.1498 0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643539 2 0.1498 0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643540 2 0.1498 0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643541 2 0.1498 0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643542 2 0.1498 0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643543 2 0.1498 0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643544 2 0.1498 0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643514 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643515 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643516 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643517 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643518 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643519 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643520 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643521 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643522 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643523 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643524 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643525 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643526 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643527 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643528 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643529 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643530 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643545 2 0.0405 0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643546 2 0.0405 0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643547 2 0.0405 0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643548 2 0.0405 0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643549 2 0.0405 0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643550 2 0.0405 0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643551 2 0.0405 0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643552 2 0.0405 0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643553 2 0.0405 0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643554 2 0.0405 0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643555 2 0.0405 0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643556 2 0.0405 0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643558 2 0.0405 0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643559 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643560 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643561 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643562 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643563 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643564 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643565 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643566 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643567 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643568 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643569 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643570 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643571 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643572 2 0.1257 0.969 0.000 0.952 0.000 0.000 0.020 0.028
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["MAD", "pam"]
# you can also extract it by
# res = res_list["MAD:pam"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'MAD' method.
#> Subgroups are detected by 'pam' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 5.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.4350 0.566 0.566
#> 3 3 1.000 0.999 1.000 0.2891 0.874 0.777
#> 4 4 0.913 0.934 0.968 0.2818 0.838 0.632
#> 5 5 0.933 0.933 0.946 0.0465 0.966 0.880
#> 6 6 0.842 0.896 0.909 0.0468 0.969 0.873
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 5
#> attr(,"optional")
#> [1] 2 3 4
There is also optional best \(k\) = 2 3 4 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.000 1.000 1.000 0 0.000
#> SRR1643168 1 0.000 1.000 1.000 0 0.000
#> SRR1643169 1 0.000 1.000 1.000 0 0.000
#> SRR1643170 1 0.000 1.000 1.000 0 0.000
#> SRR1643171 1 0.000 1.000 1.000 0 0.000
#> SRR1643172 1 0.000 1.000 1.000 0 0.000
#> SRR1643173 1 0.000 1.000 1.000 0 0.000
#> SRR1643174 1 0.000 1.000 1.000 0 0.000
#> SRR1643175 1 0.000 1.000 1.000 0 0.000
#> SRR1643176 1 0.000 1.000 1.000 0 0.000
#> SRR1643177 1 0.000 1.000 1.000 0 0.000
#> SRR1643178 1 0.000 1.000 1.000 0 0.000
#> SRR1643180 1 0.000 1.000 1.000 0 0.000
#> SRR1643181 1 0.000 1.000 1.000 0 0.000
#> SRR1643182 1 0.000 1.000 1.000 0 0.000
#> SRR1643183 1 0.000 1.000 1.000 0 0.000
#> SRR1643184 1 0.000 1.000 1.000 0 0.000
#> SRR1643185 1 0.000 1.000 1.000 0 0.000
#> SRR1643186 1 0.000 1.000 1.000 0 0.000
#> SRR1643187 1 0.000 1.000 1.000 0 0.000
#> SRR1643188 1 0.000 1.000 1.000 0 0.000
#> SRR1643189 1 0.000 1.000 1.000 0 0.000
#> SRR1643190 1 0.000 1.000 1.000 0 0.000
#> SRR1643191 1 0.000 1.000 1.000 0 0.000
#> SRR1643192 1 0.000 1.000 1.000 0 0.000
#> SRR1643193 1 0.000 1.000 1.000 0 0.000
#> SRR1643194 1 0.000 1.000 1.000 0 0.000
#> SRR1643195 1 0.000 1.000 1.000 0 0.000
#> SRR1643196 1 0.000 1.000 1.000 0 0.000
#> SRR1643197 1 0.000 1.000 1.000 0 0.000
#> SRR1643198 1 0.000 1.000 1.000 0 0.000
#> SRR1643199 1 0.000 1.000 1.000 0 0.000
#> SRR1643200 1 0.000 1.000 1.000 0 0.000
#> SRR1643201 1 0.000 1.000 1.000 0 0.000
#> SRR1643202 1 0.000 1.000 1.000 0 0.000
#> SRR1643203 1 0.000 1.000 1.000 0 0.000
#> SRR1643204 1 0.000 1.000 1.000 0 0.000
#> SRR1643205 3 0.000 0.996 0.000 0 1.000
#> SRR1643206 3 0.000 0.996 0.000 0 1.000
#> SRR1643207 3 0.000 0.996 0.000 0 1.000
#> SRR1643208 3 0.000 0.996 0.000 0 1.000
#> SRR1643209 3 0.000 0.996 0.000 0 1.000
#> SRR1643210 3 0.000 0.996 0.000 0 1.000
#> SRR1643211 3 0.000 0.996 0.000 0 1.000
#> SRR1643212 3 0.000 0.996 0.000 0 1.000
#> SRR1643213 3 0.000 0.996 0.000 0 1.000
#> SRR1643214 3 0.000 0.996 0.000 0 1.000
#> SRR1643215 3 0.000 0.996 0.000 0 1.000
#> SRR1643216 3 0.000 0.996 0.000 0 1.000
#> SRR1643217 3 0.000 0.996 0.000 0 1.000
#> SRR1643218 3 0.000 0.996 0.000 0 1.000
#> SRR1643219 3 0.000 0.996 0.000 0 1.000
#> SRR1643220 3 0.000 0.996 0.000 0 1.000
#> SRR1643221 3 0.000 0.996 0.000 0 1.000
#> SRR1643222 3 0.000 0.996 0.000 0 1.000
#> SRR1643223 3 0.000 0.996 0.000 0 1.000
#> SRR1643224 3 0.000 0.996 0.000 0 1.000
#> SRR1643225 3 0.000 0.996 0.000 0 1.000
#> SRR1643226 3 0.000 0.996 0.000 0 1.000
#> SRR1643227 3 0.000 0.996 0.000 0 1.000
#> SRR1643228 3 0.000 0.996 0.000 0 1.000
#> SRR1643229 3 0.000 0.996 0.000 0 1.000
#> SRR1643230 3 0.000 0.996 0.000 0 1.000
#> SRR1643231 3 0.000 0.996 0.000 0 1.000
#> SRR1643232 3 0.000 0.996 0.000 0 1.000
#> SRR1643233 3 0.000 0.996 0.000 0 1.000
#> SRR1643234 3 0.000 0.996 0.000 0 1.000
#> SRR1643235 3 0.000 0.996 0.000 0 1.000
#> SRR1643236 3 0.000 0.996 0.000 0 1.000
#> SRR1643237 3 0.000 0.996 0.000 0 1.000
#> SRR1643238 3 0.000 0.996 0.000 0 1.000
#> SRR1643239 3 0.000 0.996 0.000 0 1.000
#> SRR1643240 3 0.000 0.996 0.000 0 1.000
#> SRR1643241 3 0.000 0.996 0.000 0 1.000
#> SRR1643242 3 0.000 0.996 0.000 0 1.000
#> SRR1643243 3 0.000 0.996 0.000 0 1.000
#> SRR1643245 3 0.000 0.996 0.000 0 1.000
#> SRR1643246 3 0.000 0.996 0.000 0 1.000
#> SRR1643247 3 0.000 0.996 0.000 0 1.000
#> SRR1643248 3 0.000 0.996 0.000 0 1.000
#> SRR1643249 3 0.388 0.804 0.152 0 0.848
#> SRR1643250 1 0.000 1.000 1.000 0 0.000
#> SRR1643251 1 0.000 1.000 1.000 0 0.000
#> SRR1643252 1 0.000 1.000 1.000 0 0.000
#> SRR1643253 1 0.000 1.000 1.000 0 0.000
#> SRR1643254 1 0.000 1.000 1.000 0 0.000
#> SRR1643255 1 0.000 1.000 1.000 0 0.000
#> SRR1643256 1 0.000 1.000 1.000 0 0.000
#> SRR1643257 1 0.000 1.000 1.000 0 0.000
#> SRR1643258 1 0.000 1.000 1.000 0 0.000
#> SRR1643259 1 0.000 1.000 1.000 0 0.000
#> SRR1643260 1 0.000 1.000 1.000 0 0.000
#> SRR1643261 1 0.000 1.000 1.000 0 0.000
#> SRR1643262 1 0.000 1.000 1.000 0 0.000
#> SRR1643263 1 0.000 1.000 1.000 0 0.000
#> SRR1643264 1 0.000 1.000 1.000 0 0.000
#> SRR1643266 1 0.000 1.000 1.000 0 0.000
#> SRR1643267 1 0.000 1.000 1.000 0 0.000
#> SRR1643268 1 0.000 1.000 1.000 0 0.000
#> SRR1643269 1 0.000 1.000 1.000 0 0.000
#> SRR1643270 1 0.000 1.000 1.000 0 0.000
#> SRR1643271 1 0.000 1.000 1.000 0 0.000
#> SRR1643272 1 0.000 1.000 1.000 0 0.000
#> SRR1643273 1 0.000 1.000 1.000 0 0.000
#> SRR1643274 1 0.000 1.000 1.000 0 0.000
#> SRR1643275 1 0.000 1.000 1.000 0 0.000
#> SRR1643276 1 0.000 1.000 1.000 0 0.000
#> SRR1643277 1 0.000 1.000 1.000 0 0.000
#> SRR1643278 1 0.000 1.000 1.000 0 0.000
#> SRR1643279 1 0.000 1.000 1.000 0 0.000
#> SRR1643280 1 0.000 1.000 1.000 0 0.000
#> SRR1643281 1 0.000 1.000 1.000 0 0.000
#> SRR1643282 1 0.000 1.000 1.000 0 0.000
#> SRR1643283 1 0.000 1.000 1.000 0 0.000
#> SRR1643284 1 0.000 1.000 1.000 0 0.000
#> SRR1643285 1 0.000 1.000 1.000 0 0.000
#> SRR1643286 1 0.000 1.000 1.000 0 0.000
#> SRR1643287 1 0.000 1.000 1.000 0 0.000
#> SRR1643288 1 0.000 1.000 1.000 0 0.000
#> SRR1643289 1 0.000 1.000 1.000 0 0.000
#> SRR1643290 1 0.000 1.000 1.000 0 0.000
#> SRR1643291 1 0.000 1.000 1.000 0 0.000
#> SRR1643292 1 0.000 1.000 1.000 0 0.000
#> SRR1643293 1 0.000 1.000 1.000 0 0.000
#> SRR1643294 1 0.000 1.000 1.000 0 0.000
#> SRR1643295 1 0.000 1.000 1.000 0 0.000
#> SRR1643296 1 0.000 1.000 1.000 0 0.000
#> SRR1643297 1 0.000 1.000 1.000 0 0.000
#> SRR1643298 1 0.000 1.000 1.000 0 0.000
#> SRR1643299 1 0.000 1.000 1.000 0 0.000
#> SRR1643300 1 0.000 1.000 1.000 0 0.000
#> SRR1643301 1 0.000 1.000 1.000 0 0.000
#> SRR1643302 1 0.000 1.000 1.000 0 0.000
#> SRR1643303 1 0.000 1.000 1.000 0 0.000
#> SRR1643304 1 0.000 1.000 1.000 0 0.000
#> SRR1643305 1 0.000 1.000 1.000 0 0.000
#> SRR1643306 1 0.000 1.000 1.000 0 0.000
#> SRR1643307 1 0.000 1.000 1.000 0 0.000
#> SRR1643308 1 0.000 1.000 1.000 0 0.000
#> SRR1643309 1 0.000 1.000 1.000 0 0.000
#> SRR1643310 1 0.000 1.000 1.000 0 0.000
#> SRR1643311 1 0.000 1.000 1.000 0 0.000
#> SRR1643312 1 0.000 1.000 1.000 0 0.000
#> SRR1643313 1 0.000 1.000 1.000 0 0.000
#> SRR1643314 1 0.000 1.000 1.000 0 0.000
#> SRR1643315 1 0.000 1.000 1.000 0 0.000
#> SRR1643316 1 0.000 1.000 1.000 0 0.000
#> SRR1643317 1 0.000 1.000 1.000 0 0.000
#> SRR1643318 1 0.000 1.000 1.000 0 0.000
#> SRR1643319 1 0.000 1.000 1.000 0 0.000
#> SRR1643320 1 0.000 1.000 1.000 0 0.000
#> SRR1643321 1 0.000 1.000 1.000 0 0.000
#> SRR1643322 1 0.000 1.000 1.000 0 0.000
#> SRR1643323 1 0.000 1.000 1.000 0 0.000
#> SRR1643324 1 0.000 1.000 1.000 0 0.000
#> SRR1643325 1 0.000 1.000 1.000 0 0.000
#> SRR1643326 1 0.000 1.000 1.000 0 0.000
#> SRR1643327 1 0.000 1.000 1.000 0 0.000
#> SRR1643328 1 0.000 1.000 1.000 0 0.000
#> SRR1643329 1 0.000 1.000 1.000 0 0.000
#> SRR1643330 1 0.000 1.000 1.000 0 0.000
#> SRR1643331 1 0.000 1.000 1.000 0 0.000
#> SRR1643332 1 0.000 1.000 1.000 0 0.000
#> SRR1643333 1 0.000 1.000 1.000 0 0.000
#> SRR1643334 1 0.000 1.000 1.000 0 0.000
#> SRR1643335 1 0.000 1.000 1.000 0 0.000
#> SRR1643336 1 0.000 1.000 1.000 0 0.000
#> SRR1643337 1 0.000 1.000 1.000 0 0.000
#> SRR1643338 1 0.000 1.000 1.000 0 0.000
#> SRR1643339 1 0.000 1.000 1.000 0 0.000
#> SRR1643340 1 0.000 1.000 1.000 0 0.000
#> SRR1643341 1 0.000 1.000 1.000 0 0.000
#> SRR1643342 1 0.000 1.000 1.000 0 0.000
#> SRR1643343 1 0.000 1.000 1.000 0 0.000
#> SRR1643344 1 0.000 1.000 1.000 0 0.000
#> SRR1643345 1 0.000 1.000 1.000 0 0.000
#> SRR1643346 1 0.000 1.000 1.000 0 0.000
#> SRR1643347 1 0.000 1.000 1.000 0 0.000
#> SRR1643348 1 0.000 1.000 1.000 0 0.000
#> SRR1643349 1 0.000 1.000 1.000 0 0.000
#> SRR1643350 1 0.000 1.000 1.000 0 0.000
#> SRR1643351 1 0.000 1.000 1.000 0 0.000
#> SRR1643352 1 0.000 1.000 1.000 0 0.000
#> SRR1643353 1 0.000 1.000 1.000 0 0.000
#> SRR1643354 1 0.000 1.000 1.000 0 0.000
#> SRR1643355 1 0.000 1.000 1.000 0 0.000
#> SRR1643356 1 0.000 1.000 1.000 0 0.000
#> SRR1643357 1 0.000 1.000 1.000 0 0.000
#> SRR1643358 1 0.000 1.000 1.000 0 0.000
#> SRR1643359 1 0.000 1.000 1.000 0 0.000
#> SRR1643360 1 0.000 1.000 1.000 0 0.000
#> SRR1643361 1 0.000 1.000 1.000 0 0.000
#> SRR1643362 1 0.000 1.000 1.000 0 0.000
#> SRR1643363 1 0.000 1.000 1.000 0 0.000
#> SRR1643364 1 0.000 1.000 1.000 0 0.000
#> SRR1643365 1 0.000 1.000 1.000 0 0.000
#> SRR1643366 1 0.000 1.000 1.000 0 0.000
#> SRR1643367 1 0.000 1.000 1.000 0 0.000
#> SRR1643368 1 0.000 1.000 1.000 0 0.000
#> SRR1643369 1 0.000 1.000 1.000 0 0.000
#> SRR1643370 1 0.000 1.000 1.000 0 0.000
#> SRR1643371 1 0.000 1.000 1.000 0 0.000
#> SRR1643372 1 0.000 1.000 1.000 0 0.000
#> SRR1643373 1 0.000 1.000 1.000 0 0.000
#> SRR1643374 1 0.000 1.000 1.000 0 0.000
#> SRR1643375 1 0.000 1.000 1.000 0 0.000
#> SRR1643376 1 0.000 1.000 1.000 0 0.000
#> SRR1643377 1 0.000 1.000 1.000 0 0.000
#> SRR1643378 1 0.000 1.000 1.000 0 0.000
#> SRR1643379 1 0.000 1.000 1.000 0 0.000
#> SRR1643380 1 0.000 1.000 1.000 0 0.000
#> SRR1643381 1 0.000 1.000 1.000 0 0.000
#> SRR1643382 1 0.000 1.000 1.000 0 0.000
#> SRR1643383 1 0.000 1.000 1.000 0 0.000
#> SRR1643384 1 0.000 1.000 1.000 0 0.000
#> SRR1643385 1 0.000 1.000 1.000 0 0.000
#> SRR1643386 1 0.000 1.000 1.000 0 0.000
#> SRR1643387 1 0.000 1.000 1.000 0 0.000
#> SRR1643388 1 0.000 1.000 1.000 0 0.000
#> SRR1643389 1 0.000 1.000 1.000 0 0.000
#> SRR1643390 1 0.000 1.000 1.000 0 0.000
#> SRR1643391 1 0.000 1.000 1.000 0 0.000
#> SRR1643392 1 0.000 1.000 1.000 0 0.000
#> SRR1643393 1 0.000 1.000 1.000 0 0.000
#> SRR1643394 1 0.000 1.000 1.000 0 0.000
#> SRR1643395 1 0.000 1.000 1.000 0 0.000
#> SRR1643396 1 0.000 1.000 1.000 0 0.000
#> SRR1643397 1 0.000 1.000 1.000 0 0.000
#> SRR1643398 1 0.000 1.000 1.000 0 0.000
#> SRR1643399 1 0.000 1.000 1.000 0 0.000
#> SRR1643400 1 0.000 1.000 1.000 0 0.000
#> SRR1643401 1 0.000 1.000 1.000 0 0.000
#> SRR1643402 1 0.000 1.000 1.000 0 0.000
#> SRR1643403 1 0.000 1.000 1.000 0 0.000
#> SRR1643404 1 0.000 1.000 1.000 0 0.000
#> SRR1643405 1 0.000 1.000 1.000 0 0.000
#> SRR1643406 1 0.000 1.000 1.000 0 0.000
#> SRR1643407 1 0.000 1.000 1.000 0 0.000
#> SRR1643408 1 0.000 1.000 1.000 0 0.000
#> SRR1643409 1 0.000 1.000 1.000 0 0.000
#> SRR1643410 1 0.000 1.000 1.000 0 0.000
#> SRR1643411 1 0.000 1.000 1.000 0 0.000
#> SRR1643412 1 0.000 1.000 1.000 0 0.000
#> SRR1643413 1 0.000 1.000 1.000 0 0.000
#> SRR1643414 1 0.000 1.000 1.000 0 0.000
#> SRR1643415 1 0.000 1.000 1.000 0 0.000
#> SRR1643416 1 0.000 1.000 1.000 0 0.000
#> SRR1643417 1 0.000 1.000 1.000 0 0.000
#> SRR1643418 1 0.000 1.000 1.000 0 0.000
#> SRR1643419 1 0.000 1.000 1.000 0 0.000
#> SRR1643420 1 0.000 1.000 1.000 0 0.000
#> SRR1643421 1 0.000 1.000 1.000 0 0.000
#> SRR1643422 1 0.000 1.000 1.000 0 0.000
#> SRR1643423 1 0.000 1.000 1.000 0 0.000
#> SRR1643424 1 0.000 1.000 1.000 0 0.000
#> SRR1643425 1 0.000 1.000 1.000 0 0.000
#> SRR1643426 1 0.000 1.000 1.000 0 0.000
#> SRR1643427 1 0.000 1.000 1.000 0 0.000
#> SRR1643428 1 0.000 1.000 1.000 0 0.000
#> SRR1643429 1 0.000 1.000 1.000 0 0.000
#> SRR1643430 1 0.000 1.000 1.000 0 0.000
#> SRR1643431 1 0.000 1.000 1.000 0 0.000
#> SRR1643432 1 0.000 1.000 1.000 0 0.000
#> SRR1643433 1 0.000 1.000 1.000 0 0.000
#> SRR1643434 1 0.000 1.000 1.000 0 0.000
#> SRR1643435 1 0.000 1.000 1.000 0 0.000
#> SRR1643436 1 0.000 1.000 1.000 0 0.000
#> SRR1643437 1 0.000 1.000 1.000 0 0.000
#> SRR1643438 1 0.000 1.000 1.000 0 0.000
#> SRR1643439 1 0.000 1.000 1.000 0 0.000
#> SRR1643440 1 0.000 1.000 1.000 0 0.000
#> SRR1643441 1 0.000 1.000 1.000 0 0.000
#> SRR1643442 1 0.000 1.000 1.000 0 0.000
#> SRR1643443 2 0.000 1.000 0.000 1 0.000
#> SRR1643444 2 0.000 1.000 0.000 1 0.000
#> SRR1643445 2 0.000 1.000 0.000 1 0.000
#> SRR1643446 2 0.000 1.000 0.000 1 0.000
#> SRR1643447 2 0.000 1.000 0.000 1 0.000
#> SRR1643448 2 0.000 1.000 0.000 1 0.000
#> SRR1643449 2 0.000 1.000 0.000 1 0.000
#> SRR1643450 2 0.000 1.000 0.000 1 0.000
#> SRR1643451 2 0.000 1.000 0.000 1 0.000
#> SRR1643452 2 0.000 1.000 0.000 1 0.000
#> SRR1643453 2 0.000 1.000 0.000 1 0.000
#> SRR1643454 2 0.000 1.000 0.000 1 0.000
#> SRR1643455 2 0.000 1.000 0.000 1 0.000
#> SRR1643456 2 0.000 1.000 0.000 1 0.000
#> SRR1643457 2 0.000 1.000 0.000 1 0.000
#> SRR1643458 2 0.000 1.000 0.000 1 0.000
#> SRR1643459 2 0.000 1.000 0.000 1 0.000
#> SRR1643460 2 0.000 1.000 0.000 1 0.000
#> SRR1643461 2 0.000 1.000 0.000 1 0.000
#> SRR1643462 2 0.000 1.000 0.000 1 0.000
#> SRR1643463 2 0.000 1.000 0.000 1 0.000
#> SRR1643464 2 0.000 1.000 0.000 1 0.000
#> SRR1643466 2 0.000 1.000 0.000 1 0.000
#> SRR1643467 2 0.000 1.000 0.000 1 0.000
#> SRR1643468 2 0.000 1.000 0.000 1 0.000
#> SRR1643469 2 0.000 1.000 0.000 1 0.000
#> SRR1643470 2 0.000 1.000 0.000 1 0.000
#> SRR1643471 2 0.000 1.000 0.000 1 0.000
#> SRR1643472 2 0.000 1.000 0.000 1 0.000
#> SRR1643473 2 0.000 1.000 0.000 1 0.000
#> SRR1643474 2 0.000 1.000 0.000 1 0.000
#> SRR1643475 2 0.000 1.000 0.000 1 0.000
#> SRR1643477 2 0.000 1.000 0.000 1 0.000
#> SRR1643478 2 0.000 1.000 0.000 1 0.000
#> SRR1643479 2 0.000 1.000 0.000 1 0.000
#> SRR1643480 2 0.000 1.000 0.000 1 0.000
#> SRR1643481 2 0.000 1.000 0.000 1 0.000
#> SRR1643482 2 0.000 1.000 0.000 1 0.000
#> SRR1643483 2 0.000 1.000 0.000 1 0.000
#> SRR1643484 2 0.000 1.000 0.000 1 0.000
#> SRR1643485 2 0.000 1.000 0.000 1 0.000
#> SRR1643486 2 0.000 1.000 0.000 1 0.000
#> SRR1643487 2 0.000 1.000 0.000 1 0.000
#> SRR1643488 2 0.000 1.000 0.000 1 0.000
#> SRR1643489 2 0.000 1.000 0.000 1 0.000
#> SRR1643490 2 0.000 1.000 0.000 1 0.000
#> SRR1643491 2 0.000 1.000 0.000 1 0.000
#> SRR1643492 2 0.000 1.000 0.000 1 0.000
#> SRR1643493 2 0.000 1.000 0.000 1 0.000
#> SRR1643494 2 0.000 1.000 0.000 1 0.000
#> SRR1643495 2 0.000 1.000 0.000 1 0.000
#> SRR1643496 2 0.000 1.000 0.000 1 0.000
#> SRR1643497 2 0.000 1.000 0.000 1 0.000
#> SRR1643498 2 0.000 1.000 0.000 1 0.000
#> SRR1643499 2 0.000 1.000 0.000 1 0.000
#> SRR1643500 2 0.000 1.000 0.000 1 0.000
#> SRR1643501 2 0.000 1.000 0.000 1 0.000
#> SRR1643502 2 0.000 1.000 0.000 1 0.000
#> SRR1643503 2 0.000 1.000 0.000 1 0.000
#> SRR1643504 2 0.000 1.000 0.000 1 0.000
#> SRR1643505 2 0.000 1.000 0.000 1 0.000
#> SRR1643506 2 0.000 1.000 0.000 1 0.000
#> SRR1643507 2 0.000 1.000 0.000 1 0.000
#> SRR1643508 2 0.000 1.000 0.000 1 0.000
#> SRR1643509 2 0.000 1.000 0.000 1 0.000
#> SRR1643510 2 0.000 1.000 0.000 1 0.000
#> SRR1643511 2 0.000 1.000 0.000 1 0.000
#> SRR1643512 2 0.000 1.000 0.000 1 0.000
#> SRR1643513 2 0.000 1.000 0.000 1 0.000
#> SRR1643531 2 0.000 1.000 0.000 1 0.000
#> SRR1643532 2 0.000 1.000 0.000 1 0.000
#> SRR1643533 2 0.000 1.000 0.000 1 0.000
#> SRR1643534 2 0.000 1.000 0.000 1 0.000
#> SRR1643535 2 0.000 1.000 0.000 1 0.000
#> SRR1643536 2 0.000 1.000 0.000 1 0.000
#> SRR1643537 2 0.000 1.000 0.000 1 0.000
#> SRR1643538 2 0.000 1.000 0.000 1 0.000
#> SRR1643539 2 0.000 1.000 0.000 1 0.000
#> SRR1643540 2 0.000 1.000 0.000 1 0.000
#> SRR1643541 2 0.000 1.000 0.000 1 0.000
#> SRR1643542 2 0.000 1.000 0.000 1 0.000
#> SRR1643543 2 0.000 1.000 0.000 1 0.000
#> SRR1643544 2 0.000 1.000 0.000 1 0.000
#> SRR1643514 2 0.000 1.000 0.000 1 0.000
#> SRR1643515 2 0.000 1.000 0.000 1 0.000
#> SRR1643516 2 0.000 1.000 0.000 1 0.000
#> SRR1643517 2 0.000 1.000 0.000 1 0.000
#> SRR1643518 2 0.000 1.000 0.000 1 0.000
#> SRR1643519 2 0.000 1.000 0.000 1 0.000
#> SRR1643520 2 0.000 1.000 0.000 1 0.000
#> SRR1643521 2 0.000 1.000 0.000 1 0.000
#> SRR1643522 2 0.000 1.000 0.000 1 0.000
#> SRR1643523 2 0.000 1.000 0.000 1 0.000
#> SRR1643524 2 0.000 1.000 0.000 1 0.000
#> SRR1643525 2 0.000 1.000 0.000 1 0.000
#> SRR1643526 2 0.000 1.000 0.000 1 0.000
#> SRR1643527 2 0.000 1.000 0.000 1 0.000
#> SRR1643528 2 0.000 1.000 0.000 1 0.000
#> SRR1643529 2 0.000 1.000 0.000 1 0.000
#> SRR1643530 2 0.000 1.000 0.000 1 0.000
#> SRR1643545 2 0.000 1.000 0.000 1 0.000
#> SRR1643546 2 0.000 1.000 0.000 1 0.000
#> SRR1643547 2 0.000 1.000 0.000 1 0.000
#> SRR1643548 2 0.000 1.000 0.000 1 0.000
#> SRR1643549 2 0.000 1.000 0.000 1 0.000
#> SRR1643550 2 0.000 1.000 0.000 1 0.000
#> SRR1643551 2 0.000 1.000 0.000 1 0.000
#> SRR1643552 2 0.000 1.000 0.000 1 0.000
#> SRR1643553 2 0.000 1.000 0.000 1 0.000
#> SRR1643554 2 0.000 1.000 0.000 1 0.000
#> SRR1643555 2 0.000 1.000 0.000 1 0.000
#> SRR1643556 2 0.000 1.000 0.000 1 0.000
#> SRR1643558 2 0.000 1.000 0.000 1 0.000
#> SRR1643559 2 0.000 1.000 0.000 1 0.000
#> SRR1643560 2 0.000 1.000 0.000 1 0.000
#> SRR1643561 2 0.000 1.000 0.000 1 0.000
#> SRR1643562 2 0.000 1.000 0.000 1 0.000
#> SRR1643563 2 0.000 1.000 0.000 1 0.000
#> SRR1643564 2 0.000 1.000 0.000 1 0.000
#> SRR1643565 2 0.000 1.000 0.000 1 0.000
#> SRR1643566 2 0.000 1.000 0.000 1 0.000
#> SRR1643567 2 0.000 1.000 0.000 1 0.000
#> SRR1643568 2 0.000 1.000 0.000 1 0.000
#> SRR1643569 2 0.000 1.000 0.000 1 0.000
#> SRR1643570 2 0.000 1.000 0.000 1 0.000
#> SRR1643571 2 0.000 1.000 0.000 1 0.000
#> SRR1643572 2 0.000 1.000 0.000 1 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643168 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643169 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643170 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643171 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643172 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643173 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643174 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643175 4 0.3486 0.814 0.188 0 0.00 0.812
#> SRR1643176 4 0.3123 0.849 0.156 0 0.00 0.844
#> SRR1643177 4 0.2868 0.868 0.136 0 0.00 0.864
#> SRR1643178 4 0.2814 0.871 0.132 0 0.00 0.868
#> SRR1643180 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643181 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643182 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643183 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643184 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643185 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643186 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643187 1 0.2814 0.827 0.868 0 0.00 0.132
#> SRR1643188 1 0.2530 0.844 0.888 0 0.00 0.112
#> SRR1643189 1 0.2704 0.834 0.876 0 0.00 0.124
#> SRR1643190 1 0.2589 0.839 0.884 0 0.00 0.116
#> SRR1643191 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643192 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643193 1 0.2704 0.830 0.876 0 0.00 0.124
#> SRR1643194 1 0.3172 0.795 0.840 0 0.00 0.160
#> SRR1643195 4 0.3311 0.831 0.172 0 0.00 0.828
#> SRR1643196 4 0.3266 0.835 0.168 0 0.00 0.832
#> SRR1643197 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643198 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643199 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643200 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643201 4 0.4855 0.395 0.400 0 0.00 0.600
#> SRR1643202 4 0.4855 0.395 0.400 0 0.00 0.600
#> SRR1643203 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643204 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643205 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643206 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643207 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643208 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643209 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643210 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643211 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643212 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643213 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643214 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643215 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643216 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643217 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643218 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643219 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643220 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643221 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643222 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643223 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643224 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643225 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643226 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643227 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643228 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643229 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643230 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643231 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643232 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643233 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643234 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643235 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643236 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643237 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643238 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643239 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643240 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643241 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643242 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643243 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643245 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643246 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643247 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643248 3 0.0000 0.996 0.000 0 1.00 0.000
#> SRR1643249 3 0.3400 0.772 0.180 0 0.82 0.000
#> SRR1643250 4 0.1118 0.930 0.036 0 0.00 0.964
#> SRR1643251 4 0.1557 0.921 0.056 0 0.00 0.944
#> SRR1643252 4 0.1302 0.927 0.044 0 0.00 0.956
#> SRR1643253 4 0.2011 0.908 0.080 0 0.00 0.920
#> SRR1643254 4 0.0707 0.937 0.020 0 0.00 0.980
#> SRR1643255 4 0.0592 0.938 0.016 0 0.00 0.984
#> SRR1643256 4 0.0592 0.938 0.016 0 0.00 0.984
#> SRR1643257 4 0.2149 0.903 0.088 0 0.00 0.912
#> SRR1643258 4 0.0817 0.935 0.024 0 0.00 0.976
#> SRR1643259 4 0.2081 0.905 0.084 0 0.00 0.916
#> SRR1643260 4 0.1637 0.919 0.060 0 0.00 0.940
#> SRR1643261 4 0.1940 0.910 0.076 0 0.00 0.924
#> SRR1643262 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643263 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643264 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643266 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643267 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643268 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643269 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643270 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643271 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643272 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643273 1 0.4624 0.529 0.660 0 0.00 0.340
#> SRR1643274 1 0.4624 0.529 0.660 0 0.00 0.340
#> SRR1643275 1 0.4624 0.529 0.660 0 0.00 0.340
#> SRR1643276 1 0.4624 0.529 0.660 0 0.00 0.340
#> SRR1643277 1 0.4624 0.529 0.660 0 0.00 0.340
#> SRR1643278 1 0.4624 0.529 0.660 0 0.00 0.340
#> SRR1643279 1 0.4697 0.491 0.644 0 0.00 0.356
#> SRR1643280 1 0.4624 0.529 0.660 0 0.00 0.340
#> SRR1643281 1 0.4624 0.529 0.660 0 0.00 0.340
#> SRR1643282 1 0.4624 0.529 0.660 0 0.00 0.340
#> SRR1643283 1 0.4624 0.529 0.660 0 0.00 0.340
#> SRR1643284 1 0.4624 0.529 0.660 0 0.00 0.340
#> SRR1643285 1 0.4624 0.529 0.660 0 0.00 0.340
#> SRR1643286 1 0.4624 0.529 0.660 0 0.00 0.340
#> SRR1643287 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643288 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643289 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643290 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643291 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643292 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643293 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643294 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643295 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643296 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643297 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643298 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643299 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643300 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643301 4 0.3311 0.831 0.172 0 0.00 0.828
#> SRR1643302 4 0.3311 0.831 0.172 0 0.00 0.828
#> SRR1643303 4 0.3311 0.831 0.172 0 0.00 0.828
#> SRR1643304 4 0.3311 0.831 0.172 0 0.00 0.828
#> SRR1643305 4 0.3311 0.831 0.172 0 0.00 0.828
#> SRR1643306 4 0.3311 0.831 0.172 0 0.00 0.828
#> SRR1643307 4 0.3311 0.831 0.172 0 0.00 0.828
#> SRR1643308 4 0.3311 0.831 0.172 0 0.00 0.828
#> SRR1643309 4 0.3311 0.831 0.172 0 0.00 0.828
#> SRR1643310 4 0.3311 0.831 0.172 0 0.00 0.828
#> SRR1643311 4 0.3311 0.831 0.172 0 0.00 0.828
#> SRR1643312 4 0.3311 0.831 0.172 0 0.00 0.828
#> SRR1643313 4 0.3311 0.831 0.172 0 0.00 0.828
#> SRR1643314 1 0.0921 0.907 0.972 0 0.00 0.028
#> SRR1643315 1 0.0188 0.920 0.996 0 0.00 0.004
#> SRR1643316 1 0.1792 0.880 0.932 0 0.00 0.068
#> SRR1643317 1 0.0817 0.909 0.976 0 0.00 0.024
#> SRR1643318 1 0.0188 0.920 0.996 0 0.00 0.004
#> SRR1643319 1 0.0469 0.916 0.988 0 0.00 0.012
#> SRR1643320 1 0.0921 0.907 0.972 0 0.00 0.028
#> SRR1643321 1 0.2216 0.861 0.908 0 0.00 0.092
#> SRR1643322 1 0.1389 0.894 0.952 0 0.00 0.048
#> SRR1643323 1 0.1867 0.877 0.928 0 0.00 0.072
#> SRR1643324 1 0.0921 0.907 0.972 0 0.00 0.028
#> SRR1643325 1 0.1716 0.883 0.936 0 0.00 0.064
#> SRR1643326 1 0.1940 0.873 0.924 0 0.00 0.076
#> SRR1643327 1 0.1302 0.897 0.956 0 0.00 0.044
#> SRR1643328 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643329 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643330 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643331 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643332 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643333 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643334 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643335 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643336 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643337 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643338 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643339 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643340 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643341 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643342 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643343 4 0.3074 0.853 0.152 0 0.00 0.848
#> SRR1643344 4 0.2704 0.876 0.124 0 0.00 0.876
#> SRR1643345 4 0.3311 0.833 0.172 0 0.00 0.828
#> SRR1643346 4 0.2921 0.866 0.140 0 0.00 0.860
#> SRR1643347 4 0.2589 0.884 0.116 0 0.00 0.884
#> SRR1643348 4 0.3123 0.852 0.156 0 0.00 0.844
#> SRR1643349 4 0.2081 0.906 0.084 0 0.00 0.916
#> SRR1643350 4 0.2647 0.881 0.120 0 0.00 0.880
#> SRR1643351 4 0.3123 0.850 0.156 0 0.00 0.844
#> SRR1643352 4 0.2921 0.866 0.140 0 0.00 0.860
#> SRR1643353 4 0.2081 0.905 0.084 0 0.00 0.916
#> SRR1643354 4 0.3356 0.829 0.176 0 0.00 0.824
#> SRR1643355 4 0.2469 0.889 0.108 0 0.00 0.892
#> SRR1643356 4 0.2469 0.888 0.108 0 0.00 0.892
#> SRR1643357 4 0.2530 0.887 0.112 0 0.00 0.888
#> SRR1643358 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643359 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643360 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643361 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643362 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643363 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643364 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643365 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643366 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643367 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643368 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643369 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643370 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643371 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643372 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643373 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643374 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643375 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643376 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643377 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643378 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643379 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643380 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643381 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643382 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643383 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643384 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643385 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643386 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643387 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643388 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643389 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643390 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643391 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643392 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643393 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643394 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643395 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643396 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643397 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643398 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643399 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643400 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643401 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643402 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643403 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643404 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643405 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643406 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643407 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643408 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643409 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643410 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643411 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643412 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643413 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643414 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643415 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643416 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643417 1 0.0000 0.922 1.000 0 0.00 0.000
#> SRR1643418 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643419 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643420 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643421 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643422 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643423 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643424 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643425 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643426 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643427 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643428 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643429 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643430 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643431 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643432 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643433 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643434 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643435 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643436 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643437 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643438 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643439 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643440 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643441 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643442 4 0.0000 0.943 0.000 0 0.00 1.000
#> SRR1643443 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643505 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0.00 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0.00 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643168 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643169 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643170 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643171 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643172 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643173 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643174 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643175 4 0.3888 0.788 0.064 0 0.00 0.800 0.136
#> SRR1643176 4 0.3970 0.769 0.056 0 0.00 0.788 0.156
#> SRR1643177 4 0.3835 0.775 0.048 0 0.00 0.796 0.156
#> SRR1643178 4 0.3578 0.808 0.048 0 0.00 0.820 0.132
#> SRR1643180 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643181 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643182 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643183 5 0.2966 0.963 0.184 0 0.00 0.000 0.816
#> SRR1643184 5 0.2966 0.963 0.184 0 0.00 0.000 0.816
#> SRR1643185 5 0.2966 0.963 0.184 0 0.00 0.000 0.816
#> SRR1643186 5 0.2966 0.963 0.184 0 0.00 0.000 0.816
#> SRR1643187 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643188 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643189 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643190 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643191 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643192 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643193 5 0.2813 0.947 0.168 0 0.00 0.000 0.832
#> SRR1643194 5 0.2813 0.947 0.168 0 0.00 0.000 0.832
#> SRR1643195 5 0.3283 0.743 0.028 0 0.00 0.140 0.832
#> SRR1643196 5 0.3283 0.743 0.028 0 0.00 0.140 0.832
#> SRR1643197 5 0.3177 0.965 0.208 0 0.00 0.000 0.792
#> SRR1643198 5 0.3177 0.965 0.208 0 0.00 0.000 0.792
#> SRR1643199 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643200 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643201 5 0.2970 0.947 0.168 0 0.00 0.004 0.828
#> SRR1643202 5 0.2930 0.942 0.164 0 0.00 0.004 0.832
#> SRR1643203 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643204 5 0.3109 0.973 0.200 0 0.00 0.000 0.800
#> SRR1643205 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643206 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643207 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643208 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643209 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643210 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643211 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643212 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643213 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643214 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643215 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643216 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643217 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643218 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643219 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643220 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643221 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643222 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643223 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643224 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643225 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643226 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643227 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643228 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643229 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643230 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643231 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643232 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643233 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643234 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643235 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643236 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643237 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643238 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643239 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643240 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643241 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643242 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643243 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643245 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643246 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643247 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643248 3 0.0000 0.993 0.000 0 1.00 0.000 0.000
#> SRR1643249 3 0.3895 0.536 0.000 0 0.68 0.000 0.320
#> SRR1643250 4 0.1485 0.931 0.020 0 0.00 0.948 0.032
#> SRR1643251 4 0.1836 0.926 0.036 0 0.00 0.932 0.032
#> SRR1643252 4 0.1579 0.930 0.024 0 0.00 0.944 0.032
#> SRR1643253 4 0.1836 0.926 0.036 0 0.00 0.932 0.032
#> SRR1643254 4 0.1386 0.933 0.016 0 0.00 0.952 0.032
#> SRR1643255 4 0.1281 0.933 0.012 0 0.00 0.956 0.032
#> SRR1643256 4 0.1281 0.933 0.012 0 0.00 0.956 0.032
#> SRR1643257 4 0.1915 0.925 0.040 0 0.00 0.928 0.032
#> SRR1643258 4 0.1386 0.933 0.016 0 0.00 0.952 0.032
#> SRR1643259 4 0.1992 0.923 0.044 0 0.00 0.924 0.032
#> SRR1643260 4 0.1836 0.926 0.036 0 0.00 0.932 0.032
#> SRR1643261 4 0.1836 0.926 0.036 0 0.00 0.932 0.032
#> SRR1643262 4 0.0880 0.935 0.000 0 0.00 0.968 0.032
#> SRR1643263 4 0.0880 0.935 0.000 0 0.00 0.968 0.032
#> SRR1643264 4 0.0880 0.935 0.000 0 0.00 0.968 0.032
#> SRR1643266 4 0.0880 0.935 0.000 0 0.00 0.968 0.032
#> SRR1643267 4 0.0880 0.935 0.000 0 0.00 0.968 0.032
#> SRR1643268 4 0.0880 0.935 0.000 0 0.00 0.968 0.032
#> SRR1643269 4 0.0880 0.935 0.000 0 0.00 0.968 0.032
#> SRR1643270 4 0.0880 0.935 0.000 0 0.00 0.968 0.032
#> SRR1643271 4 0.0880 0.935 0.000 0 0.00 0.968 0.032
#> SRR1643272 4 0.0880 0.935 0.000 0 0.00 0.968 0.032
#> SRR1643273 1 0.4583 0.596 0.672 0 0.00 0.296 0.032
#> SRR1643274 1 0.4583 0.596 0.672 0 0.00 0.296 0.032
#> SRR1643275 1 0.4583 0.596 0.672 0 0.00 0.296 0.032
#> SRR1643276 1 0.4583 0.596 0.672 0 0.00 0.296 0.032
#> SRR1643277 1 0.4583 0.596 0.672 0 0.00 0.296 0.032
#> SRR1643278 1 0.4583 0.596 0.672 0 0.00 0.296 0.032
#> SRR1643279 1 0.4623 0.585 0.664 0 0.00 0.304 0.032
#> SRR1643280 1 0.4583 0.596 0.672 0 0.00 0.296 0.032
#> SRR1643281 1 0.4583 0.596 0.672 0 0.00 0.296 0.032
#> SRR1643282 1 0.4583 0.596 0.672 0 0.00 0.296 0.032
#> SRR1643283 1 0.4583 0.596 0.672 0 0.00 0.296 0.032
#> SRR1643284 1 0.4603 0.591 0.668 0 0.00 0.300 0.032
#> SRR1643285 1 0.4583 0.596 0.672 0 0.00 0.296 0.032
#> SRR1643286 1 0.4583 0.596 0.672 0 0.00 0.296 0.032
#> SRR1643287 4 0.0963 0.935 0.000 0 0.00 0.964 0.036
#> SRR1643288 4 0.0963 0.935 0.000 0 0.00 0.964 0.036
#> SRR1643289 4 0.0963 0.935 0.000 0 0.00 0.964 0.036
#> SRR1643290 4 0.0963 0.935 0.000 0 0.00 0.964 0.036
#> SRR1643291 4 0.0963 0.935 0.000 0 0.00 0.964 0.036
#> SRR1643292 4 0.0963 0.935 0.000 0 0.00 0.964 0.036
#> SRR1643293 4 0.0963 0.935 0.000 0 0.00 0.964 0.036
#> SRR1643294 4 0.0963 0.935 0.000 0 0.00 0.964 0.036
#> SRR1643295 4 0.0963 0.935 0.000 0 0.00 0.964 0.036
#> SRR1643296 4 0.0963 0.935 0.000 0 0.00 0.964 0.036
#> SRR1643297 4 0.0963 0.935 0.000 0 0.00 0.964 0.036
#> SRR1643298 4 0.0963 0.935 0.000 0 0.00 0.964 0.036
#> SRR1643299 4 0.0963 0.935 0.000 0 0.00 0.964 0.036
#> SRR1643300 4 0.0963 0.935 0.000 0 0.00 0.964 0.036
#> SRR1643301 4 0.2209 0.916 0.056 0 0.00 0.912 0.032
#> SRR1643302 4 0.2209 0.916 0.056 0 0.00 0.912 0.032
#> SRR1643303 4 0.2209 0.916 0.056 0 0.00 0.912 0.032
#> SRR1643304 4 0.2209 0.916 0.056 0 0.00 0.912 0.032
#> SRR1643305 4 0.2209 0.916 0.056 0 0.00 0.912 0.032
#> SRR1643306 4 0.2209 0.916 0.056 0 0.00 0.912 0.032
#> SRR1643307 4 0.2209 0.916 0.056 0 0.00 0.912 0.032
#> SRR1643308 4 0.2209 0.916 0.056 0 0.00 0.912 0.032
#> SRR1643309 4 0.2209 0.916 0.056 0 0.00 0.912 0.032
#> SRR1643310 4 0.2209 0.916 0.056 0 0.00 0.912 0.032
#> SRR1643311 4 0.2209 0.916 0.056 0 0.00 0.912 0.032
#> SRR1643312 4 0.2209 0.916 0.056 0 0.00 0.912 0.032
#> SRR1643313 4 0.2209 0.916 0.056 0 0.00 0.912 0.032
#> SRR1643314 1 0.1211 0.858 0.960 0 0.00 0.016 0.024
#> SRR1643315 1 0.1281 0.856 0.956 0 0.00 0.012 0.032
#> SRR1643316 1 0.2067 0.833 0.920 0 0.00 0.048 0.032
#> SRR1643317 1 0.1399 0.854 0.952 0 0.00 0.020 0.028
#> SRR1643318 1 0.0865 0.863 0.972 0 0.00 0.004 0.024
#> SRR1643319 1 0.1012 0.863 0.968 0 0.00 0.012 0.020
#> SRR1643320 1 0.1211 0.859 0.960 0 0.00 0.016 0.024
#> SRR1643321 1 0.2535 0.808 0.892 0 0.00 0.076 0.032
#> SRR1643322 1 0.1992 0.836 0.924 0 0.00 0.044 0.032
#> SRR1643323 1 0.2209 0.825 0.912 0 0.00 0.056 0.032
#> SRR1643324 1 0.1399 0.854 0.952 0 0.00 0.020 0.028
#> SRR1643325 1 0.2208 0.820 0.908 0 0.00 0.072 0.020
#> SRR1643326 1 0.2409 0.814 0.900 0 0.00 0.068 0.032
#> SRR1643327 1 0.1753 0.844 0.936 0 0.00 0.032 0.032
#> SRR1643328 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643329 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643330 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643331 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643332 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643333 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643334 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643335 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643336 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643337 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643338 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643339 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643340 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643341 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643342 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643343 4 0.1270 0.925 0.052 0 0.00 0.948 0.000
#> SRR1643344 4 0.1197 0.926 0.048 0 0.00 0.952 0.000
#> SRR1643345 4 0.1410 0.921 0.060 0 0.00 0.940 0.000
#> SRR1643346 4 0.1544 0.917 0.068 0 0.00 0.932 0.000
#> SRR1643347 4 0.0963 0.931 0.036 0 0.00 0.964 0.000
#> SRR1643348 4 0.1544 0.918 0.068 0 0.00 0.932 0.000
#> SRR1643349 4 0.0963 0.931 0.036 0 0.00 0.964 0.000
#> SRR1643350 4 0.1341 0.924 0.056 0 0.00 0.944 0.000
#> SRR1643351 4 0.1341 0.924 0.056 0 0.00 0.944 0.000
#> SRR1643352 4 0.1544 0.917 0.068 0 0.00 0.932 0.000
#> SRR1643353 4 0.1121 0.929 0.044 0 0.00 0.956 0.000
#> SRR1643354 4 0.1410 0.921 0.060 0 0.00 0.940 0.000
#> SRR1643355 4 0.1043 0.930 0.040 0 0.00 0.960 0.000
#> SRR1643356 4 0.0963 0.931 0.036 0 0.00 0.964 0.000
#> SRR1643357 4 0.1043 0.930 0.040 0 0.00 0.960 0.000
#> SRR1643358 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643359 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643360 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643361 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643362 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643363 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643364 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643365 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643366 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643367 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643368 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643369 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643370 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643371 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643372 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643373 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643374 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643375 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643376 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643377 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643378 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643379 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643380 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643381 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643382 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643383 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643384 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643385 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643386 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643387 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643388 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643389 4 0.0000 0.936 0.000 0 0.00 1.000 0.000
#> SRR1643390 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643391 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643392 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643393 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643394 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643395 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643396 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643397 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643398 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643399 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643400 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643401 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643402 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643403 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643404 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643405 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643406 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643407 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643408 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643409 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643410 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643411 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643412 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643413 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643414 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643415 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643416 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643417 1 0.0000 0.875 1.000 0 0.00 0.000 0.000
#> SRR1643418 4 0.2852 0.855 0.000 0 0.00 0.828 0.172
#> SRR1643419 4 0.2852 0.855 0.000 0 0.00 0.828 0.172
#> SRR1643420 4 0.2966 0.856 0.000 0 0.00 0.816 0.184
#> SRR1643421 4 0.2929 0.856 0.000 0 0.00 0.820 0.180
#> SRR1643422 4 0.2813 0.854 0.000 0 0.00 0.832 0.168
#> SRR1643423 4 0.2852 0.855 0.000 0 0.00 0.828 0.172
#> SRR1643424 4 0.2852 0.855 0.000 0 0.00 0.828 0.172
#> SRR1643425 4 0.2852 0.855 0.000 0 0.00 0.828 0.172
#> SRR1643426 4 0.2929 0.856 0.000 0 0.00 0.820 0.180
#> SRR1643427 4 0.3003 0.856 0.000 0 0.00 0.812 0.188
#> SRR1643428 4 0.2929 0.856 0.000 0 0.00 0.820 0.180
#> SRR1643429 4 0.2852 0.855 0.000 0 0.00 0.828 0.172
#> SRR1643430 4 0.2813 0.854 0.000 0 0.00 0.832 0.168
#> SRR1643431 4 0.2813 0.854 0.000 0 0.00 0.832 0.168
#> SRR1643432 4 0.2813 0.854 0.000 0 0.00 0.832 0.168
#> SRR1643433 4 0.2813 0.854 0.000 0 0.00 0.832 0.168
#> SRR1643434 4 0.2813 0.854 0.000 0 0.00 0.832 0.168
#> SRR1643435 4 0.2813 0.854 0.000 0 0.00 0.832 0.168
#> SRR1643436 4 0.2813 0.854 0.000 0 0.00 0.832 0.168
#> SRR1643437 4 0.2813 0.854 0.000 0 0.00 0.832 0.168
#> SRR1643438 4 0.2813 0.854 0.000 0 0.00 0.832 0.168
#> SRR1643439 4 0.2813 0.854 0.000 0 0.00 0.832 0.168
#> SRR1643440 4 0.2813 0.854 0.000 0 0.00 0.832 0.168
#> SRR1643441 4 0.2813 0.854 0.000 0 0.00 0.832 0.168
#> SRR1643442 4 0.2813 0.854 0.000 0 0.00 0.832 0.168
#> SRR1643443 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643505 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0.00 0.000 0.000
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 6 0.2378 0.932 0.152 0.000 0.00 0.000 0.000 0.848
#> SRR1643168 6 0.2135 0.943 0.128 0.000 0.00 0.000 0.000 0.872
#> SRR1643169 6 0.2219 0.940 0.136 0.000 0.00 0.000 0.000 0.864
#> SRR1643170 6 0.2135 0.943 0.128 0.000 0.00 0.000 0.000 0.872
#> SRR1643171 6 0.2048 0.943 0.120 0.000 0.00 0.000 0.000 0.880
#> SRR1643172 6 0.2048 0.943 0.120 0.000 0.00 0.000 0.000 0.880
#> SRR1643173 6 0.2048 0.943 0.120 0.000 0.00 0.000 0.000 0.880
#> SRR1643174 6 0.2048 0.943 0.120 0.000 0.00 0.000 0.000 0.880
#> SRR1643175 4 0.3834 0.599 0.024 0.000 0.00 0.708 0.000 0.268
#> SRR1643176 4 0.3879 0.560 0.020 0.000 0.00 0.688 0.000 0.292
#> SRR1643177 4 0.3778 0.571 0.016 0.000 0.00 0.696 0.000 0.288
#> SRR1643178 4 0.3518 0.630 0.012 0.000 0.00 0.732 0.000 0.256
#> SRR1643180 6 0.2416 0.930 0.156 0.000 0.00 0.000 0.000 0.844
#> SRR1643181 6 0.2416 0.930 0.156 0.000 0.00 0.000 0.000 0.844
#> SRR1643182 6 0.2416 0.930 0.156 0.000 0.00 0.000 0.000 0.844
#> SRR1643183 6 0.1765 0.930 0.096 0.000 0.00 0.000 0.000 0.904
#> SRR1643184 6 0.1663 0.923 0.088 0.000 0.00 0.000 0.000 0.912
#> SRR1643185 6 0.1814 0.933 0.100 0.000 0.00 0.000 0.000 0.900
#> SRR1643186 6 0.1765 0.930 0.096 0.000 0.00 0.000 0.000 0.904
#> SRR1643187 6 0.2664 0.905 0.184 0.000 0.00 0.000 0.000 0.816
#> SRR1643188 6 0.2664 0.905 0.184 0.000 0.00 0.000 0.000 0.816
#> SRR1643189 6 0.2664 0.905 0.184 0.000 0.00 0.000 0.000 0.816
#> SRR1643190 6 0.2664 0.905 0.184 0.000 0.00 0.000 0.000 0.816
#> SRR1643191 6 0.2048 0.943 0.120 0.000 0.00 0.000 0.000 0.880
#> SRR1643192 6 0.2048 0.943 0.120 0.000 0.00 0.000 0.000 0.880
#> SRR1643193 6 0.1007 0.876 0.044 0.000 0.00 0.000 0.000 0.956
#> SRR1643194 6 0.1007 0.876 0.044 0.000 0.00 0.000 0.000 0.956
#> SRR1643195 6 0.0363 0.801 0.000 0.000 0.00 0.012 0.000 0.988
#> SRR1643196 6 0.0363 0.801 0.000 0.000 0.00 0.012 0.000 0.988
#> SRR1643197 6 0.2135 0.940 0.128 0.000 0.00 0.000 0.000 0.872
#> SRR1643198 6 0.2135 0.940 0.128 0.000 0.00 0.000 0.000 0.872
#> SRR1643199 6 0.2178 0.942 0.132 0.000 0.00 0.000 0.000 0.868
#> SRR1643200 6 0.2135 0.943 0.128 0.000 0.00 0.000 0.000 0.872
#> SRR1643201 6 0.1267 0.895 0.060 0.000 0.00 0.000 0.000 0.940
#> SRR1643202 6 0.1204 0.890 0.056 0.000 0.00 0.000 0.000 0.944
#> SRR1643203 6 0.2664 0.905 0.184 0.000 0.00 0.000 0.000 0.816
#> SRR1643204 6 0.2664 0.905 0.184 0.000 0.00 0.000 0.000 0.816
#> SRR1643205 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643206 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643207 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643208 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643209 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643210 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643211 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643212 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643213 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643214 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643215 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643216 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643217 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643218 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643219 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643220 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643221 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643222 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643223 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643224 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643225 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643226 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643227 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643228 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643229 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643230 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643231 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643232 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643233 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643234 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643235 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643236 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643237 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643238 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643239 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643240 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643241 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643242 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643243 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643245 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643246 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643247 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643248 3 0.0000 0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643249 3 0.3499 0.523 0.000 0.000 0.68 0.000 0.000 0.320
#> SRR1643250 4 0.2389 0.892 0.008 0.000 0.00 0.864 0.000 0.128
#> SRR1643251 4 0.2692 0.885 0.012 0.000 0.00 0.840 0.000 0.148
#> SRR1643252 4 0.2442 0.889 0.004 0.000 0.00 0.852 0.000 0.144
#> SRR1643253 4 0.2653 0.887 0.012 0.000 0.00 0.844 0.000 0.144
#> SRR1643254 4 0.2362 0.891 0.004 0.000 0.00 0.860 0.000 0.136
#> SRR1643255 4 0.2320 0.892 0.004 0.000 0.00 0.864 0.000 0.132
#> SRR1643256 4 0.2320 0.892 0.004 0.000 0.00 0.864 0.000 0.132
#> SRR1643257 4 0.2593 0.887 0.008 0.000 0.00 0.844 0.000 0.148
#> SRR1643258 4 0.2320 0.892 0.004 0.000 0.00 0.864 0.000 0.132
#> SRR1643259 4 0.2768 0.882 0.012 0.000 0.00 0.832 0.000 0.156
#> SRR1643260 4 0.2706 0.882 0.008 0.000 0.00 0.832 0.000 0.160
#> SRR1643261 4 0.2730 0.884 0.012 0.000 0.00 0.836 0.000 0.152
#> SRR1643262 4 0.2048 0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643263 4 0.2048 0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643264 4 0.2048 0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643266 4 0.2048 0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643267 4 0.2048 0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643268 4 0.2048 0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643269 4 0.2048 0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643270 4 0.2048 0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643271 4 0.2048 0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643272 4 0.2048 0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643273 1 0.5480 0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643274 1 0.5480 0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643275 1 0.5480 0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643276 1 0.5497 0.525 0.560 0.000 0.00 0.256 0.000 0.184
#> SRR1643277 1 0.5480 0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643278 1 0.5480 0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643279 1 0.5548 0.498 0.548 0.000 0.00 0.268 0.000 0.184
#> SRR1643280 1 0.5480 0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643281 1 0.5480 0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643282 1 0.5480 0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643283 1 0.5480 0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643284 1 0.5497 0.524 0.560 0.000 0.00 0.256 0.000 0.184
#> SRR1643285 1 0.5480 0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643286 1 0.5480 0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643287 4 0.2402 0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643288 4 0.2357 0.893 0.000 0.000 0.00 0.872 0.012 0.116
#> SRR1643289 4 0.2402 0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643290 4 0.2357 0.893 0.000 0.000 0.00 0.872 0.012 0.116
#> SRR1643291 4 0.2402 0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643292 4 0.2402 0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643293 4 0.2402 0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643294 4 0.2302 0.892 0.000 0.000 0.00 0.872 0.008 0.120
#> SRR1643295 4 0.2402 0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643296 4 0.2302 0.892 0.000 0.000 0.00 0.872 0.008 0.120
#> SRR1643297 4 0.2402 0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643298 4 0.2402 0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643299 4 0.2402 0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643300 4 0.2402 0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643301 4 0.3189 0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643302 4 0.3189 0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643303 4 0.3189 0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643304 4 0.3189 0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643305 4 0.3189 0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643306 4 0.3189 0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643307 4 0.3189 0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643308 4 0.3189 0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643309 4 0.3189 0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643310 4 0.3189 0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643311 4 0.3189 0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643312 4 0.3189 0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643313 4 0.3189 0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643314 1 0.2003 0.799 0.884 0.000 0.00 0.000 0.000 0.116
#> SRR1643315 1 0.2784 0.784 0.848 0.000 0.00 0.028 0.000 0.124
#> SRR1643316 1 0.3432 0.755 0.800 0.000 0.00 0.052 0.000 0.148
#> SRR1643317 1 0.2431 0.790 0.860 0.000 0.00 0.008 0.000 0.132
#> SRR1643318 1 0.2118 0.801 0.888 0.000 0.00 0.008 0.000 0.104
#> SRR1643319 1 0.2301 0.800 0.884 0.000 0.00 0.020 0.000 0.096
#> SRR1643320 1 0.2651 0.790 0.860 0.000 0.00 0.028 0.000 0.112
#> SRR1643321 1 0.3821 0.732 0.772 0.000 0.00 0.080 0.000 0.148
#> SRR1643322 1 0.3570 0.749 0.792 0.000 0.00 0.064 0.000 0.144
#> SRR1643323 1 0.3746 0.738 0.780 0.000 0.00 0.080 0.000 0.140
#> SRR1643324 1 0.2446 0.791 0.864 0.000 0.00 0.012 0.000 0.124
#> SRR1643325 1 0.3254 0.768 0.820 0.000 0.00 0.056 0.000 0.124
#> SRR1643326 1 0.3247 0.761 0.808 0.000 0.00 0.036 0.000 0.156
#> SRR1643327 1 0.3108 0.772 0.828 0.000 0.00 0.044 0.000 0.128
#> SRR1643328 1 0.0146 0.838 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643329 1 0.0632 0.833 0.976 0.000 0.00 0.000 0.000 0.024
#> SRR1643330 1 0.0363 0.837 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643331 1 0.0547 0.834 0.980 0.000 0.00 0.000 0.000 0.020
#> SRR1643332 1 0.0547 0.834 0.980 0.000 0.00 0.000 0.000 0.020
#> SRR1643333 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643334 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643335 1 0.0547 0.834 0.980 0.000 0.00 0.000 0.000 0.020
#> SRR1643336 1 0.0713 0.831 0.972 0.000 0.00 0.000 0.000 0.028
#> SRR1643337 1 0.0363 0.837 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643338 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643339 1 0.0363 0.837 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643340 1 0.0632 0.833 0.976 0.000 0.00 0.000 0.000 0.024
#> SRR1643341 1 0.0260 0.838 0.992 0.000 0.00 0.000 0.000 0.008
#> SRR1643342 1 0.0146 0.838 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643343 4 0.1779 0.874 0.016 0.000 0.00 0.920 0.000 0.064
#> SRR1643344 4 0.1779 0.874 0.016 0.000 0.00 0.920 0.000 0.064
#> SRR1643345 4 0.1926 0.874 0.020 0.000 0.00 0.912 0.000 0.068
#> SRR1643346 4 0.1686 0.876 0.012 0.000 0.00 0.924 0.000 0.064
#> SRR1643347 4 0.1531 0.880 0.004 0.000 0.00 0.928 0.000 0.068
#> SRR1643348 4 0.1779 0.875 0.016 0.000 0.00 0.920 0.000 0.064
#> SRR1643349 4 0.1267 0.881 0.000 0.000 0.00 0.940 0.000 0.060
#> SRR1643350 4 0.1867 0.873 0.020 0.000 0.00 0.916 0.000 0.064
#> SRR1643351 4 0.1838 0.875 0.016 0.000 0.00 0.916 0.000 0.068
#> SRR1643352 4 0.1584 0.877 0.008 0.000 0.00 0.928 0.000 0.064
#> SRR1643353 4 0.1471 0.879 0.004 0.000 0.00 0.932 0.000 0.064
#> SRR1643354 4 0.1926 0.874 0.020 0.000 0.00 0.912 0.000 0.068
#> SRR1643355 4 0.1584 0.877 0.008 0.000 0.00 0.928 0.000 0.064
#> SRR1643356 4 0.1471 0.879 0.004 0.000 0.00 0.932 0.000 0.064
#> SRR1643357 4 0.1471 0.879 0.004 0.000 0.00 0.932 0.000 0.064
#> SRR1643358 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643359 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643360 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643361 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643362 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643363 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643364 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643365 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643366 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643367 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643368 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643369 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643370 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643371 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643372 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643373 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643374 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643375 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643376 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643377 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643378 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643379 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643380 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643381 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643382 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643383 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643384 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643385 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643386 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643387 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643388 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643389 4 0.0000 0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643390 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643391 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643392 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643393 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643394 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643395 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643396 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643397 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643398 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643399 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643400 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643401 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643402 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643403 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643404 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643405 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643406 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643407 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643408 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643409 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643410 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643411 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643412 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643413 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643414 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643415 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643416 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643417 1 0.0000 0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643418 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643419 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643420 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643421 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643422 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643423 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643424 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643425 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643426 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643427 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643428 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643429 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643430 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643431 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643432 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643433 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643434 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643435 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643436 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643437 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643438 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643439 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643440 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643441 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643442 5 0.2260 1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643443 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643444 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643445 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643446 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643447 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643448 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643449 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643450 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643451 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643452 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643453 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643454 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643455 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643456 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643457 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643458 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643459 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643460 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643461 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643462 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643463 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643464 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643466 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643467 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643468 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643469 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643470 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643471 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643472 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643473 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643474 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643475 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643477 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643478 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643479 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643480 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643481 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643482 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643483 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643484 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643485 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643486 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643487 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643488 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643489 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643490 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643491 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643492 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643493 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643494 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643495 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643496 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643497 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643498 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643499 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643500 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643501 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643502 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643503 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643504 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643505 2 0.0713 0.929 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643506 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643507 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643508 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643509 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643510 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643511 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643512 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643513 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643531 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643532 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643533 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643534 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643535 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643536 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643537 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643538 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643539 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643540 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643541 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643542 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643543 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643544 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643514 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643515 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643516 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643517 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643518 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643519 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643520 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643521 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643522 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643523 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643524 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643525 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643526 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643527 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643528 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643529 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643530 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643545 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643546 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643547 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643548 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643549 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643550 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643551 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643552 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643553 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643554 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643555 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643556 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643558 2 0.2260 0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643559 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643560 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643561 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643562 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643563 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643564 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643565 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643566 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643567 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643568 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643569 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643570 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643571 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643572 2 0.0000 0.927 0.000 1.000 0.00 0.000 0.000 0.000
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["MAD", "mclust"]
# you can also extract it by
# res = res_list["MAD:mclust"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'MAD' method.
#> Subgroups are detected by 'mclust' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 6.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.4350 0.566 0.566
#> 3 3 0.684 0.887 0.908 0.3615 0.874 0.777
#> 4 4 0.989 0.966 0.982 0.2105 0.840 0.637
#> 5 5 0.922 0.943 0.958 0.0698 0.929 0.755
#> 6 6 0.931 0.886 0.930 0.0383 0.966 0.852
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 6
#> attr(,"optional")
#> [1] 2 4 5
There is also optional best \(k\) = 2 4 5 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.6192 0.567 0.580 0 0.420
#> SRR1643168 1 0.6192 0.567 0.580 0 0.420
#> SRR1643169 1 0.6192 0.567 0.580 0 0.420
#> SRR1643170 1 0.6192 0.567 0.580 0 0.420
#> SRR1643171 1 0.6154 0.586 0.592 0 0.408
#> SRR1643172 1 0.6140 0.592 0.596 0 0.404
#> SRR1643173 1 0.6154 0.586 0.592 0 0.408
#> SRR1643174 1 0.6154 0.586 0.592 0 0.408
#> SRR1643175 1 0.2796 0.836 0.908 0 0.092
#> SRR1643176 1 0.2878 0.834 0.904 0 0.096
#> SRR1643177 1 0.2796 0.836 0.908 0 0.092
#> SRR1643178 1 0.2711 0.836 0.912 0 0.088
#> SRR1643180 1 0.6192 0.567 0.580 0 0.420
#> SRR1643181 1 0.6192 0.567 0.580 0 0.420
#> SRR1643182 1 0.6192 0.567 0.580 0 0.420
#> SRR1643183 1 0.6192 0.567 0.580 0 0.420
#> SRR1643184 1 0.6192 0.567 0.580 0 0.420
#> SRR1643185 1 0.6192 0.567 0.580 0 0.420
#> SRR1643186 1 0.6192 0.567 0.580 0 0.420
#> SRR1643187 1 0.6192 0.567 0.580 0 0.420
#> SRR1643188 1 0.6192 0.567 0.580 0 0.420
#> SRR1643189 1 0.6192 0.567 0.580 0 0.420
#> SRR1643190 1 0.6192 0.567 0.580 0 0.420
#> SRR1643191 1 0.5431 0.741 0.716 0 0.284
#> SRR1643192 1 0.5431 0.741 0.716 0 0.284
#> SRR1643193 1 0.6192 0.567 0.580 0 0.420
#> SRR1643194 1 0.6192 0.567 0.580 0 0.420
#> SRR1643195 1 0.5098 0.682 0.752 0 0.248
#> SRR1643196 1 0.5098 0.682 0.752 0 0.248
#> SRR1643197 1 0.5216 0.762 0.740 0 0.260
#> SRR1643198 1 0.5216 0.762 0.740 0 0.260
#> SRR1643199 1 0.6192 0.567 0.580 0 0.420
#> SRR1643200 1 0.6192 0.567 0.580 0 0.420
#> SRR1643201 1 0.6192 0.567 0.580 0 0.420
#> SRR1643202 1 0.6192 0.567 0.580 0 0.420
#> SRR1643203 1 0.6192 0.567 0.580 0 0.420
#> SRR1643204 1 0.6192 0.567 0.580 0 0.420
#> SRR1643205 3 0.3816 1.000 0.148 0 0.852
#> SRR1643206 3 0.3816 1.000 0.148 0 0.852
#> SRR1643207 3 0.3816 1.000 0.148 0 0.852
#> SRR1643208 3 0.3816 1.000 0.148 0 0.852
#> SRR1643209 3 0.3816 1.000 0.148 0 0.852
#> SRR1643210 3 0.3816 1.000 0.148 0 0.852
#> SRR1643211 3 0.3816 1.000 0.148 0 0.852
#> SRR1643212 3 0.3816 1.000 0.148 0 0.852
#> SRR1643213 3 0.3816 1.000 0.148 0 0.852
#> SRR1643214 3 0.3816 1.000 0.148 0 0.852
#> SRR1643215 3 0.3816 1.000 0.148 0 0.852
#> SRR1643216 3 0.3816 1.000 0.148 0 0.852
#> SRR1643217 3 0.3816 1.000 0.148 0 0.852
#> SRR1643218 3 0.3816 1.000 0.148 0 0.852
#> SRR1643219 3 0.3816 1.000 0.148 0 0.852
#> SRR1643220 3 0.3816 1.000 0.148 0 0.852
#> SRR1643221 3 0.3816 1.000 0.148 0 0.852
#> SRR1643222 3 0.3816 1.000 0.148 0 0.852
#> SRR1643223 3 0.3816 1.000 0.148 0 0.852
#> SRR1643224 3 0.3816 1.000 0.148 0 0.852
#> SRR1643225 3 0.3816 1.000 0.148 0 0.852
#> SRR1643226 3 0.3816 1.000 0.148 0 0.852
#> SRR1643227 3 0.3816 1.000 0.148 0 0.852
#> SRR1643228 3 0.3816 1.000 0.148 0 0.852
#> SRR1643229 3 0.3816 1.000 0.148 0 0.852
#> SRR1643230 3 0.3816 1.000 0.148 0 0.852
#> SRR1643231 3 0.3816 1.000 0.148 0 0.852
#> SRR1643232 3 0.3816 1.000 0.148 0 0.852
#> SRR1643233 3 0.3816 1.000 0.148 0 0.852
#> SRR1643234 3 0.3816 1.000 0.148 0 0.852
#> SRR1643235 3 0.3816 1.000 0.148 0 0.852
#> SRR1643236 3 0.3816 1.000 0.148 0 0.852
#> SRR1643237 3 0.3816 1.000 0.148 0 0.852
#> SRR1643238 3 0.3816 1.000 0.148 0 0.852
#> SRR1643239 3 0.3816 1.000 0.148 0 0.852
#> SRR1643240 3 0.3816 1.000 0.148 0 0.852
#> SRR1643241 3 0.3816 1.000 0.148 0 0.852
#> SRR1643242 3 0.3816 1.000 0.148 0 0.852
#> SRR1643243 3 0.3816 1.000 0.148 0 0.852
#> SRR1643245 3 0.3816 1.000 0.148 0 0.852
#> SRR1643246 3 0.3816 1.000 0.148 0 0.852
#> SRR1643247 3 0.3816 1.000 0.148 0 0.852
#> SRR1643248 3 0.3816 1.000 0.148 0 0.852
#> SRR1643249 3 0.3816 1.000 0.148 0 0.852
#> SRR1643250 1 0.0000 0.866 1.000 0 0.000
#> SRR1643251 1 0.0000 0.866 1.000 0 0.000
#> SRR1643252 1 0.0000 0.866 1.000 0 0.000
#> SRR1643253 1 0.0000 0.866 1.000 0 0.000
#> SRR1643254 1 0.0000 0.866 1.000 0 0.000
#> SRR1643255 1 0.0000 0.866 1.000 0 0.000
#> SRR1643256 1 0.0000 0.866 1.000 0 0.000
#> SRR1643257 1 0.0000 0.866 1.000 0 0.000
#> SRR1643258 1 0.0000 0.866 1.000 0 0.000
#> SRR1643259 1 0.0000 0.866 1.000 0 0.000
#> SRR1643260 1 0.0000 0.866 1.000 0 0.000
#> SRR1643261 1 0.0000 0.866 1.000 0 0.000
#> SRR1643262 1 0.0000 0.866 1.000 0 0.000
#> SRR1643263 1 0.0000 0.866 1.000 0 0.000
#> SRR1643264 1 0.0000 0.866 1.000 0 0.000
#> SRR1643266 1 0.0000 0.866 1.000 0 0.000
#> SRR1643267 1 0.0000 0.866 1.000 0 0.000
#> SRR1643268 1 0.0000 0.866 1.000 0 0.000
#> SRR1643269 1 0.0000 0.866 1.000 0 0.000
#> SRR1643270 1 0.0000 0.866 1.000 0 0.000
#> SRR1643271 1 0.0000 0.866 1.000 0 0.000
#> SRR1643272 1 0.0000 0.866 1.000 0 0.000
#> SRR1643273 1 0.0000 0.866 1.000 0 0.000
#> SRR1643274 1 0.0000 0.866 1.000 0 0.000
#> SRR1643275 1 0.0000 0.866 1.000 0 0.000
#> SRR1643276 1 0.0000 0.866 1.000 0 0.000
#> SRR1643277 1 0.0000 0.866 1.000 0 0.000
#> SRR1643278 1 0.0000 0.866 1.000 0 0.000
#> SRR1643279 1 0.0000 0.866 1.000 0 0.000
#> SRR1643280 1 0.0000 0.866 1.000 0 0.000
#> SRR1643281 1 0.0000 0.866 1.000 0 0.000
#> SRR1643282 1 0.0000 0.866 1.000 0 0.000
#> SRR1643283 1 0.0000 0.866 1.000 0 0.000
#> SRR1643284 1 0.0000 0.866 1.000 0 0.000
#> SRR1643285 1 0.0000 0.866 1.000 0 0.000
#> SRR1643286 1 0.0000 0.866 1.000 0 0.000
#> SRR1643287 1 0.0000 0.866 1.000 0 0.000
#> SRR1643288 1 0.0000 0.866 1.000 0 0.000
#> SRR1643289 1 0.0000 0.866 1.000 0 0.000
#> SRR1643290 1 0.0000 0.866 1.000 0 0.000
#> SRR1643291 1 0.0000 0.866 1.000 0 0.000
#> SRR1643292 1 0.0000 0.866 1.000 0 0.000
#> SRR1643293 1 0.0000 0.866 1.000 0 0.000
#> SRR1643294 1 0.0000 0.866 1.000 0 0.000
#> SRR1643295 1 0.0000 0.866 1.000 0 0.000
#> SRR1643296 1 0.0000 0.866 1.000 0 0.000
#> SRR1643297 1 0.0000 0.866 1.000 0 0.000
#> SRR1643298 1 0.0000 0.866 1.000 0 0.000
#> SRR1643299 1 0.0000 0.866 1.000 0 0.000
#> SRR1643300 1 0.0000 0.866 1.000 0 0.000
#> SRR1643301 1 0.0000 0.866 1.000 0 0.000
#> SRR1643302 1 0.0000 0.866 1.000 0 0.000
#> SRR1643303 1 0.0000 0.866 1.000 0 0.000
#> SRR1643304 1 0.0000 0.866 1.000 0 0.000
#> SRR1643305 1 0.0000 0.866 1.000 0 0.000
#> SRR1643306 1 0.0000 0.866 1.000 0 0.000
#> SRR1643307 1 0.0000 0.866 1.000 0 0.000
#> SRR1643308 1 0.0000 0.866 1.000 0 0.000
#> SRR1643309 1 0.0000 0.866 1.000 0 0.000
#> SRR1643310 1 0.0000 0.866 1.000 0 0.000
#> SRR1643311 1 0.0000 0.866 1.000 0 0.000
#> SRR1643312 1 0.0000 0.866 1.000 0 0.000
#> SRR1643313 1 0.0000 0.866 1.000 0 0.000
#> SRR1643314 1 0.0424 0.865 0.992 0 0.008
#> SRR1643315 1 0.0424 0.865 0.992 0 0.008
#> SRR1643316 1 0.0424 0.865 0.992 0 0.008
#> SRR1643317 1 0.0424 0.865 0.992 0 0.008
#> SRR1643318 1 0.0424 0.865 0.992 0 0.008
#> SRR1643319 1 0.0424 0.865 0.992 0 0.008
#> SRR1643320 1 0.0424 0.865 0.992 0 0.008
#> SRR1643321 1 0.0424 0.865 0.992 0 0.008
#> SRR1643322 1 0.0424 0.865 0.992 0 0.008
#> SRR1643323 1 0.0424 0.865 0.992 0 0.008
#> SRR1643324 1 0.0424 0.865 0.992 0 0.008
#> SRR1643325 1 0.0424 0.865 0.992 0 0.008
#> SRR1643326 1 0.0424 0.865 0.992 0 0.008
#> SRR1643327 1 0.0424 0.865 0.992 0 0.008
#> SRR1643328 1 0.5216 0.762 0.740 0 0.260
#> SRR1643329 1 0.5216 0.762 0.740 0 0.260
#> SRR1643330 1 0.5216 0.762 0.740 0 0.260
#> SRR1643331 1 0.5216 0.762 0.740 0 0.260
#> SRR1643332 1 0.5216 0.762 0.740 0 0.260
#> SRR1643333 1 0.5216 0.762 0.740 0 0.260
#> SRR1643334 1 0.5216 0.762 0.740 0 0.260
#> SRR1643335 1 0.5216 0.762 0.740 0 0.260
#> SRR1643336 1 0.5216 0.762 0.740 0 0.260
#> SRR1643337 1 0.5216 0.762 0.740 0 0.260
#> SRR1643338 1 0.5216 0.762 0.740 0 0.260
#> SRR1643339 1 0.5216 0.762 0.740 0 0.260
#> SRR1643340 1 0.5216 0.762 0.740 0 0.260
#> SRR1643341 1 0.5216 0.762 0.740 0 0.260
#> SRR1643342 1 0.5216 0.762 0.740 0 0.260
#> SRR1643343 1 0.3192 0.822 0.888 0 0.112
#> SRR1643344 1 0.3192 0.822 0.888 0 0.112
#> SRR1643345 1 0.3192 0.822 0.888 0 0.112
#> SRR1643346 1 0.3192 0.822 0.888 0 0.112
#> SRR1643347 1 0.3192 0.822 0.888 0 0.112
#> SRR1643348 1 0.3192 0.822 0.888 0 0.112
#> SRR1643349 1 0.3192 0.822 0.888 0 0.112
#> SRR1643350 1 0.3192 0.822 0.888 0 0.112
#> SRR1643351 1 0.3192 0.822 0.888 0 0.112
#> SRR1643352 1 0.3192 0.822 0.888 0 0.112
#> SRR1643353 1 0.3192 0.822 0.888 0 0.112
#> SRR1643354 1 0.3192 0.822 0.888 0 0.112
#> SRR1643355 1 0.3192 0.822 0.888 0 0.112
#> SRR1643356 1 0.3192 0.822 0.888 0 0.112
#> SRR1643357 1 0.3192 0.822 0.888 0 0.112
#> SRR1643358 1 0.0000 0.866 1.000 0 0.000
#> SRR1643359 1 0.0000 0.866 1.000 0 0.000
#> SRR1643360 1 0.0000 0.866 1.000 0 0.000
#> SRR1643361 1 0.0000 0.866 1.000 0 0.000
#> SRR1643362 1 0.0000 0.866 1.000 0 0.000
#> SRR1643363 1 0.0000 0.866 1.000 0 0.000
#> SRR1643364 1 0.0000 0.866 1.000 0 0.000
#> SRR1643365 1 0.0000 0.866 1.000 0 0.000
#> SRR1643366 1 0.0000 0.866 1.000 0 0.000
#> SRR1643367 1 0.0000 0.866 1.000 0 0.000
#> SRR1643368 1 0.0000 0.866 1.000 0 0.000
#> SRR1643369 1 0.0000 0.866 1.000 0 0.000
#> SRR1643370 1 0.0000 0.866 1.000 0 0.000
#> SRR1643371 1 0.0000 0.866 1.000 0 0.000
#> SRR1643372 1 0.0000 0.866 1.000 0 0.000
#> SRR1643373 1 0.0000 0.866 1.000 0 0.000
#> SRR1643374 1 0.0000 0.866 1.000 0 0.000
#> SRR1643375 1 0.0000 0.866 1.000 0 0.000
#> SRR1643376 1 0.0000 0.866 1.000 0 0.000
#> SRR1643377 1 0.0000 0.866 1.000 0 0.000
#> SRR1643378 1 0.0000 0.866 1.000 0 0.000
#> SRR1643379 1 0.0000 0.866 1.000 0 0.000
#> SRR1643380 1 0.0000 0.866 1.000 0 0.000
#> SRR1643381 1 0.0000 0.866 1.000 0 0.000
#> SRR1643382 1 0.0000 0.866 1.000 0 0.000
#> SRR1643383 1 0.0000 0.866 1.000 0 0.000
#> SRR1643384 1 0.0000 0.866 1.000 0 0.000
#> SRR1643385 1 0.0000 0.866 1.000 0 0.000
#> SRR1643386 1 0.0000 0.866 1.000 0 0.000
#> SRR1643387 1 0.0000 0.866 1.000 0 0.000
#> SRR1643388 1 0.0000 0.866 1.000 0 0.000
#> SRR1643389 1 0.0000 0.866 1.000 0 0.000
#> SRR1643390 1 0.5216 0.762 0.740 0 0.260
#> SRR1643391 1 0.5216 0.762 0.740 0 0.260
#> SRR1643392 1 0.5216 0.762 0.740 0 0.260
#> SRR1643393 1 0.5216 0.762 0.740 0 0.260
#> SRR1643394 1 0.5216 0.762 0.740 0 0.260
#> SRR1643395 1 0.5216 0.762 0.740 0 0.260
#> SRR1643396 1 0.5216 0.762 0.740 0 0.260
#> SRR1643397 1 0.5216 0.762 0.740 0 0.260
#> SRR1643398 1 0.5216 0.762 0.740 0 0.260
#> SRR1643399 1 0.5216 0.762 0.740 0 0.260
#> SRR1643400 1 0.5216 0.762 0.740 0 0.260
#> SRR1643401 1 0.5216 0.762 0.740 0 0.260
#> SRR1643402 1 0.5216 0.762 0.740 0 0.260
#> SRR1643403 1 0.5216 0.762 0.740 0 0.260
#> SRR1643404 1 0.5216 0.762 0.740 0 0.260
#> SRR1643405 1 0.5216 0.762 0.740 0 0.260
#> SRR1643406 1 0.5216 0.762 0.740 0 0.260
#> SRR1643407 1 0.5216 0.762 0.740 0 0.260
#> SRR1643408 1 0.5216 0.762 0.740 0 0.260
#> SRR1643409 1 0.5216 0.762 0.740 0 0.260
#> SRR1643410 1 0.5216 0.762 0.740 0 0.260
#> SRR1643411 1 0.5216 0.762 0.740 0 0.260
#> SRR1643412 1 0.5216 0.762 0.740 0 0.260
#> SRR1643413 1 0.5216 0.762 0.740 0 0.260
#> SRR1643414 1 0.5216 0.762 0.740 0 0.260
#> SRR1643415 1 0.5216 0.762 0.740 0 0.260
#> SRR1643416 1 0.5216 0.762 0.740 0 0.260
#> SRR1643417 1 0.5216 0.762 0.740 0 0.260
#> SRR1643418 1 0.1289 0.847 0.968 0 0.032
#> SRR1643419 1 0.1289 0.847 0.968 0 0.032
#> SRR1643420 1 0.1289 0.847 0.968 0 0.032
#> SRR1643421 1 0.1289 0.847 0.968 0 0.032
#> SRR1643422 1 0.1289 0.847 0.968 0 0.032
#> SRR1643423 1 0.1289 0.847 0.968 0 0.032
#> SRR1643424 1 0.1289 0.847 0.968 0 0.032
#> SRR1643425 1 0.1289 0.847 0.968 0 0.032
#> SRR1643426 1 0.1289 0.847 0.968 0 0.032
#> SRR1643427 1 0.1289 0.847 0.968 0 0.032
#> SRR1643428 1 0.1289 0.847 0.968 0 0.032
#> SRR1643429 1 0.1289 0.847 0.968 0 0.032
#> SRR1643430 1 0.1289 0.847 0.968 0 0.032
#> SRR1643431 1 0.1289 0.847 0.968 0 0.032
#> SRR1643432 1 0.1289 0.847 0.968 0 0.032
#> SRR1643433 1 0.1289 0.847 0.968 0 0.032
#> SRR1643434 1 0.1289 0.847 0.968 0 0.032
#> SRR1643435 1 0.1289 0.847 0.968 0 0.032
#> SRR1643436 1 0.1289 0.847 0.968 0 0.032
#> SRR1643437 1 0.1289 0.847 0.968 0 0.032
#> SRR1643438 1 0.1289 0.847 0.968 0 0.032
#> SRR1643439 1 0.1289 0.847 0.968 0 0.032
#> SRR1643440 1 0.1289 0.847 0.968 0 0.032
#> SRR1643441 1 0.1289 0.847 0.968 0 0.032
#> SRR1643442 1 0.1289 0.847 0.968 0 0.032
#> SRR1643443 2 0.0000 1.000 0.000 1 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0.000
#> SRR1643505 2 0.0000 1.000 0.000 1 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643168 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643169 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643170 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643171 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643172 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643173 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643174 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643175 1 0.3569 0.789 0.804 0 0.000 0.196
#> SRR1643176 1 0.3649 0.782 0.796 0 0.000 0.204
#> SRR1643177 1 0.3528 0.793 0.808 0 0.000 0.192
#> SRR1643178 1 0.3610 0.786 0.800 0 0.000 0.200
#> SRR1643180 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643181 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643182 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643183 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643184 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643185 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643186 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643187 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643188 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643189 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643190 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643191 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643192 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643193 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643194 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643195 1 0.3219 0.813 0.836 0 0.000 0.164
#> SRR1643196 1 0.3219 0.813 0.836 0 0.000 0.164
#> SRR1643197 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643198 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643199 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643200 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643201 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643202 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643203 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643204 1 0.0000 0.934 1.000 0 0.000 0.000
#> SRR1643205 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643206 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643207 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643208 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643209 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643210 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643211 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643212 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643213 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643214 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643215 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643216 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643217 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643218 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643219 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643220 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643221 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643222 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643223 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643224 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643225 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643226 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643227 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643228 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643229 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643230 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643231 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643232 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643233 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643234 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643235 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643236 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643237 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643238 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643239 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643240 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643241 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643242 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643243 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643245 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643246 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643247 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643248 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643249 3 0.0921 0.970 0.028 0 0.972 0.000
#> SRR1643250 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643251 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643252 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643253 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643254 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643255 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643256 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643257 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643258 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643259 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643260 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643261 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643262 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643263 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643264 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643266 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643267 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643268 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643269 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643270 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643271 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643272 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643273 4 0.1022 0.966 0.032 0 0.000 0.968
#> SRR1643274 4 0.1302 0.958 0.044 0 0.000 0.956
#> SRR1643275 4 0.1211 0.961 0.040 0 0.000 0.960
#> SRR1643276 4 0.1118 0.964 0.036 0 0.000 0.964
#> SRR1643277 4 0.1211 0.961 0.040 0 0.000 0.960
#> SRR1643278 4 0.1302 0.958 0.044 0 0.000 0.956
#> SRR1643279 4 0.1302 0.958 0.044 0 0.000 0.956
#> SRR1643280 4 0.1022 0.966 0.032 0 0.000 0.968
#> SRR1643281 4 0.1022 0.966 0.032 0 0.000 0.968
#> SRR1643282 4 0.1211 0.961 0.040 0 0.000 0.960
#> SRR1643283 4 0.1211 0.961 0.040 0 0.000 0.960
#> SRR1643284 4 0.1211 0.961 0.040 0 0.000 0.960
#> SRR1643285 4 0.1022 0.966 0.032 0 0.000 0.968
#> SRR1643286 4 0.1302 0.958 0.044 0 0.000 0.956
#> SRR1643287 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643288 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643289 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643290 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643291 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643292 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643293 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643294 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643295 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643296 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643297 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643298 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643299 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643300 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643301 4 0.1022 0.966 0.032 0 0.000 0.968
#> SRR1643302 4 0.1022 0.966 0.032 0 0.000 0.968
#> SRR1643303 4 0.1022 0.966 0.032 0 0.000 0.968
#> SRR1643304 4 0.1022 0.966 0.032 0 0.000 0.968
#> SRR1643305 4 0.1022 0.966 0.032 0 0.000 0.968
#> SRR1643306 4 0.1022 0.966 0.032 0 0.000 0.968
#> SRR1643307 4 0.1022 0.966 0.032 0 0.000 0.968
#> SRR1643308 4 0.1022 0.966 0.032 0 0.000 0.968
#> SRR1643309 4 0.1022 0.966 0.032 0 0.000 0.968
#> SRR1643310 4 0.1022 0.966 0.032 0 0.000 0.968
#> SRR1643311 4 0.1022 0.966 0.032 0 0.000 0.968
#> SRR1643312 4 0.1022 0.966 0.032 0 0.000 0.968
#> SRR1643313 4 0.1022 0.966 0.032 0 0.000 0.968
#> SRR1643314 4 0.2216 0.913 0.092 0 0.000 0.908
#> SRR1643315 4 0.2216 0.913 0.092 0 0.000 0.908
#> SRR1643316 4 0.2216 0.913 0.092 0 0.000 0.908
#> SRR1643317 4 0.2216 0.913 0.092 0 0.000 0.908
#> SRR1643318 4 0.2216 0.913 0.092 0 0.000 0.908
#> SRR1643319 4 0.2281 0.909 0.096 0 0.000 0.904
#> SRR1643320 4 0.2149 0.917 0.088 0 0.000 0.912
#> SRR1643321 4 0.2081 0.921 0.084 0 0.000 0.916
#> SRR1643322 4 0.2216 0.913 0.092 0 0.000 0.908
#> SRR1643323 4 0.2345 0.904 0.100 0 0.000 0.900
#> SRR1643324 4 0.2216 0.913 0.092 0 0.000 0.908
#> SRR1643325 4 0.2281 0.909 0.096 0 0.000 0.904
#> SRR1643326 4 0.2216 0.913 0.092 0 0.000 0.908
#> SRR1643327 4 0.2149 0.917 0.088 0 0.000 0.912
#> SRR1643328 1 0.0592 0.931 0.984 0 0.000 0.016
#> SRR1643329 1 0.0469 0.933 0.988 0 0.000 0.012
#> SRR1643330 1 0.0469 0.933 0.988 0 0.000 0.012
#> SRR1643331 1 0.0921 0.924 0.972 0 0.000 0.028
#> SRR1643332 1 0.0469 0.933 0.988 0 0.000 0.012
#> SRR1643333 1 0.0707 0.929 0.980 0 0.000 0.020
#> SRR1643334 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643335 1 0.1211 0.916 0.960 0 0.000 0.040
#> SRR1643336 1 0.0817 0.926 0.976 0 0.000 0.024
#> SRR1643337 1 0.0921 0.924 0.972 0 0.000 0.028
#> SRR1643338 1 0.0469 0.933 0.988 0 0.000 0.012
#> SRR1643339 1 0.0817 0.926 0.976 0 0.000 0.024
#> SRR1643340 1 0.0921 0.924 0.972 0 0.000 0.028
#> SRR1643341 1 0.0921 0.924 0.972 0 0.000 0.028
#> SRR1643342 1 0.0921 0.924 0.972 0 0.000 0.028
#> SRR1643343 1 0.3764 0.771 0.784 0 0.000 0.216
#> SRR1643344 1 0.3764 0.771 0.784 0 0.000 0.216
#> SRR1643345 1 0.3764 0.771 0.784 0 0.000 0.216
#> SRR1643346 1 0.3764 0.771 0.784 0 0.000 0.216
#> SRR1643347 1 0.3764 0.771 0.784 0 0.000 0.216
#> SRR1643348 1 0.3764 0.771 0.784 0 0.000 0.216
#> SRR1643349 1 0.3764 0.771 0.784 0 0.000 0.216
#> SRR1643350 1 0.3764 0.771 0.784 0 0.000 0.216
#> SRR1643351 1 0.3764 0.771 0.784 0 0.000 0.216
#> SRR1643352 1 0.3764 0.771 0.784 0 0.000 0.216
#> SRR1643353 1 0.3764 0.771 0.784 0 0.000 0.216
#> SRR1643354 1 0.3764 0.771 0.784 0 0.000 0.216
#> SRR1643355 1 0.3764 0.771 0.784 0 0.000 0.216
#> SRR1643356 1 0.3764 0.771 0.784 0 0.000 0.216
#> SRR1643357 1 0.3764 0.771 0.784 0 0.000 0.216
#> SRR1643358 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643359 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643360 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643361 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643362 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643363 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643364 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643365 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643366 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643367 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643368 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643369 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643370 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643371 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643372 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643373 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643374 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643375 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643376 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643377 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643378 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643379 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643380 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643381 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643382 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643383 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643384 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643385 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643386 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643387 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643388 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643389 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643390 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643391 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643392 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643393 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643394 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643395 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643396 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643397 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643398 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643399 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643400 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643401 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643402 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643403 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643404 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643405 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643406 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643407 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643408 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643409 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643410 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643411 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643412 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643413 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643414 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643415 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643416 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643417 1 0.0188 0.936 0.996 0 0.000 0.004
#> SRR1643418 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643419 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643420 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643421 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643422 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643423 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643424 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643425 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643426 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643427 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643428 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643429 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643430 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643431 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643432 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643433 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643434 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643435 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643436 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643437 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643438 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643439 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643440 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643441 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643442 4 0.0000 0.981 0.000 0 0.000 1.000
#> SRR1643443 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643505 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0.000 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643168 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643169 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643170 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643171 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643172 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643173 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643174 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643175 1 0.3983 0.510 0.660 0 0.000 0.000 0.340
#> SRR1643176 1 0.3983 0.510 0.660 0 0.000 0.000 0.340
#> SRR1643177 1 0.3966 0.518 0.664 0 0.000 0.000 0.336
#> SRR1643178 1 0.3983 0.510 0.660 0 0.000 0.000 0.340
#> SRR1643180 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643181 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643182 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643183 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643184 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643185 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643186 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643187 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643188 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643189 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643190 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643191 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643192 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643193 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643194 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643195 1 0.6383 0.116 0.516 0 0.000 0.228 0.256
#> SRR1643196 1 0.6383 0.116 0.516 0 0.000 0.228 0.256
#> SRR1643197 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643198 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643199 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643200 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643201 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643202 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643203 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643204 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643205 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643206 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643207 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643208 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643209 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643210 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643211 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643212 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643213 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643214 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643215 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643216 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643217 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643218 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643219 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643220 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643221 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643222 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643223 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643224 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643225 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643226 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643227 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643228 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643229 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643230 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643231 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643232 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643233 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643234 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643235 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643236 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643237 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643238 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643239 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643240 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643241 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643242 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643243 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643245 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643246 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643247 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643248 3 0.0000 0.999 0.000 0 1.000 0.000 0.000
#> SRR1643249 3 0.1364 0.952 0.036 0 0.952 0.000 0.012
#> SRR1643250 4 0.3003 0.785 0.000 0 0.000 0.812 0.188
#> SRR1643251 4 0.3003 0.785 0.000 0 0.000 0.812 0.188
#> SRR1643252 4 0.2732 0.824 0.000 0 0.000 0.840 0.160
#> SRR1643253 4 0.3003 0.785 0.000 0 0.000 0.812 0.188
#> SRR1643254 4 0.3003 0.785 0.000 0 0.000 0.812 0.188
#> SRR1643255 4 0.2852 0.808 0.000 0 0.000 0.828 0.172
#> SRR1643256 4 0.3003 0.785 0.000 0 0.000 0.812 0.188
#> SRR1643257 4 0.3003 0.785 0.000 0 0.000 0.812 0.188
#> SRR1643258 4 0.3003 0.785 0.000 0 0.000 0.812 0.188
#> SRR1643259 4 0.3003 0.785 0.000 0 0.000 0.812 0.188
#> SRR1643260 4 0.3003 0.785 0.000 0 0.000 0.812 0.188
#> SRR1643261 4 0.3003 0.785 0.000 0 0.000 0.812 0.188
#> SRR1643262 4 0.2074 0.890 0.000 0 0.000 0.896 0.104
#> SRR1643263 4 0.2074 0.890 0.000 0 0.000 0.896 0.104
#> SRR1643264 4 0.2074 0.890 0.000 0 0.000 0.896 0.104
#> SRR1643266 4 0.2074 0.890 0.000 0 0.000 0.896 0.104
#> SRR1643267 4 0.2074 0.890 0.000 0 0.000 0.896 0.104
#> SRR1643268 4 0.2074 0.890 0.000 0 0.000 0.896 0.104
#> SRR1643269 4 0.2074 0.890 0.000 0 0.000 0.896 0.104
#> SRR1643270 4 0.2074 0.890 0.000 0 0.000 0.896 0.104
#> SRR1643271 4 0.2074 0.890 0.000 0 0.000 0.896 0.104
#> SRR1643272 4 0.2074 0.890 0.000 0 0.000 0.896 0.104
#> SRR1643273 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643274 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643275 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643276 5 0.3274 0.891 0.000 0 0.000 0.220 0.780
#> SRR1643277 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643278 5 0.3366 0.883 0.000 0 0.000 0.232 0.768
#> SRR1643279 5 0.3274 0.891 0.000 0 0.000 0.220 0.780
#> SRR1643280 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643281 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643282 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643283 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643284 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643285 5 0.3274 0.891 0.000 0 0.000 0.220 0.780
#> SRR1643286 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643287 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643288 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643289 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643290 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643291 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643292 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643293 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643294 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643295 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643296 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643297 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643298 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643299 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643300 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643301 5 0.3534 0.859 0.000 0 0.000 0.256 0.744
#> SRR1643302 5 0.3452 0.873 0.000 0 0.000 0.244 0.756
#> SRR1643303 5 0.3452 0.873 0.000 0 0.000 0.244 0.756
#> SRR1643304 5 0.3452 0.873 0.000 0 0.000 0.244 0.756
#> SRR1643305 5 0.3452 0.873 0.000 0 0.000 0.244 0.756
#> SRR1643306 5 0.3452 0.873 0.000 0 0.000 0.244 0.756
#> SRR1643307 5 0.3480 0.869 0.000 0 0.000 0.248 0.752
#> SRR1643308 5 0.3424 0.877 0.000 0 0.000 0.240 0.760
#> SRR1643309 5 0.3774 0.798 0.000 0 0.000 0.296 0.704
#> SRR1643310 5 0.3424 0.877 0.000 0 0.000 0.240 0.760
#> SRR1643311 5 0.3561 0.854 0.000 0 0.000 0.260 0.740
#> SRR1643312 5 0.3452 0.873 0.000 0 0.000 0.244 0.756
#> SRR1643313 5 0.3561 0.854 0.000 0 0.000 0.260 0.740
#> SRR1643314 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643315 5 0.3274 0.891 0.000 0 0.000 0.220 0.780
#> SRR1643316 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643317 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643318 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643319 5 0.5240 0.783 0.096 0 0.000 0.244 0.660
#> SRR1643320 5 0.3274 0.891 0.000 0 0.000 0.220 0.780
#> SRR1643321 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643322 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643323 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643324 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643325 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643326 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643327 5 0.3242 0.893 0.000 0 0.000 0.216 0.784
#> SRR1643328 1 0.0162 0.964 0.996 0 0.000 0.000 0.004
#> SRR1643329 1 0.0162 0.964 0.996 0 0.000 0.000 0.004
#> SRR1643330 1 0.0162 0.964 0.996 0 0.000 0.000 0.004
#> SRR1643331 1 0.0162 0.964 0.996 0 0.000 0.000 0.004
#> SRR1643332 1 0.0162 0.964 0.996 0 0.000 0.000 0.004
#> SRR1643333 1 0.0162 0.964 0.996 0 0.000 0.000 0.004
#> SRR1643334 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643335 1 0.0162 0.964 0.996 0 0.000 0.000 0.004
#> SRR1643336 1 0.0162 0.964 0.996 0 0.000 0.000 0.004
#> SRR1643337 1 0.0162 0.964 0.996 0 0.000 0.000 0.004
#> SRR1643338 1 0.0162 0.964 0.996 0 0.000 0.000 0.004
#> SRR1643339 1 0.0162 0.964 0.996 0 0.000 0.000 0.004
#> SRR1643340 1 0.0162 0.964 0.996 0 0.000 0.000 0.004
#> SRR1643341 1 0.0162 0.964 0.996 0 0.000 0.000 0.004
#> SRR1643342 1 0.0162 0.964 0.996 0 0.000 0.000 0.004
#> SRR1643343 5 0.0794 0.756 0.028 0 0.000 0.000 0.972
#> SRR1643344 5 0.0794 0.756 0.028 0 0.000 0.000 0.972
#> SRR1643345 5 0.0794 0.756 0.028 0 0.000 0.000 0.972
#> SRR1643346 5 0.0794 0.756 0.028 0 0.000 0.000 0.972
#> SRR1643347 5 0.0794 0.756 0.028 0 0.000 0.000 0.972
#> SRR1643348 5 0.0794 0.756 0.028 0 0.000 0.000 0.972
#> SRR1643349 5 0.0794 0.756 0.028 0 0.000 0.000 0.972
#> SRR1643350 5 0.0794 0.756 0.028 0 0.000 0.000 0.972
#> SRR1643351 5 0.0794 0.756 0.028 0 0.000 0.000 0.972
#> SRR1643352 5 0.0794 0.756 0.028 0 0.000 0.000 0.972
#> SRR1643353 5 0.0794 0.756 0.028 0 0.000 0.000 0.972
#> SRR1643354 5 0.0794 0.756 0.028 0 0.000 0.000 0.972
#> SRR1643355 5 0.0794 0.756 0.028 0 0.000 0.000 0.972
#> SRR1643356 5 0.0794 0.756 0.028 0 0.000 0.000 0.972
#> SRR1643357 5 0.0794 0.756 0.028 0 0.000 0.000 0.972
#> SRR1643358 4 0.1270 0.928 0.000 0 0.000 0.948 0.052
#> SRR1643359 4 0.1341 0.926 0.000 0 0.000 0.944 0.056
#> SRR1643360 4 0.1270 0.928 0.000 0 0.000 0.948 0.052
#> SRR1643361 4 0.1410 0.924 0.000 0 0.000 0.940 0.060
#> SRR1643362 4 0.1410 0.924 0.000 0 0.000 0.940 0.060
#> SRR1643363 4 0.1270 0.928 0.000 0 0.000 0.948 0.052
#> SRR1643364 4 0.0880 0.936 0.000 0 0.000 0.968 0.032
#> SRR1643365 4 0.1410 0.924 0.000 0 0.000 0.940 0.060
#> SRR1643366 4 0.1341 0.926 0.000 0 0.000 0.944 0.056
#> SRR1643367 4 0.1341 0.926 0.000 0 0.000 0.944 0.056
#> SRR1643368 4 0.1478 0.921 0.000 0 0.000 0.936 0.064
#> SRR1643369 4 0.1410 0.924 0.000 0 0.000 0.940 0.060
#> SRR1643370 4 0.1410 0.924 0.000 0 0.000 0.940 0.060
#> SRR1643371 4 0.1121 0.932 0.000 0 0.000 0.956 0.044
#> SRR1643372 4 0.1341 0.926 0.000 0 0.000 0.944 0.056
#> SRR1643373 4 0.0162 0.945 0.000 0 0.000 0.996 0.004
#> SRR1643374 4 0.0162 0.945 0.000 0 0.000 0.996 0.004
#> SRR1643375 4 0.0162 0.945 0.000 0 0.000 0.996 0.004
#> SRR1643376 4 0.0162 0.945 0.000 0 0.000 0.996 0.004
#> SRR1643377 4 0.0162 0.945 0.000 0 0.000 0.996 0.004
#> SRR1643378 4 0.0162 0.945 0.000 0 0.000 0.996 0.004
#> SRR1643379 4 0.0162 0.945 0.000 0 0.000 0.996 0.004
#> SRR1643380 4 0.0162 0.945 0.000 0 0.000 0.996 0.004
#> SRR1643381 4 0.0290 0.944 0.000 0 0.000 0.992 0.008
#> SRR1643382 4 0.0162 0.945 0.000 0 0.000 0.996 0.004
#> SRR1643383 4 0.0290 0.944 0.000 0 0.000 0.992 0.008
#> SRR1643384 4 0.0162 0.945 0.000 0 0.000 0.996 0.004
#> SRR1643385 4 0.0290 0.944 0.000 0 0.000 0.992 0.008
#> SRR1643386 4 0.0162 0.945 0.000 0 0.000 0.996 0.004
#> SRR1643387 4 0.0162 0.945 0.000 0 0.000 0.996 0.004
#> SRR1643388 4 0.0404 0.943 0.000 0 0.000 0.988 0.012
#> SRR1643389 4 0.0162 0.945 0.000 0 0.000 0.996 0.004
#> SRR1643390 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643391 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643392 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643393 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643394 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643395 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643396 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643397 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643398 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643399 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643400 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643401 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643402 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643403 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643404 1 0.0000 0.965 1.000 0 0.000 0.000 0.000
#> SRR1643405 1 0.0510 0.956 0.984 0 0.000 0.000 0.016
#> SRR1643406 1 0.0510 0.956 0.984 0 0.000 0.000 0.016
#> SRR1643407 1 0.0609 0.952 0.980 0 0.000 0.000 0.020
#> SRR1643408 1 0.0609 0.952 0.980 0 0.000 0.000 0.020
#> SRR1643409 1 0.0290 0.961 0.992 0 0.000 0.000 0.008
#> SRR1643410 1 0.0162 0.964 0.996 0 0.000 0.000 0.004
#> SRR1643411 1 0.0609 0.952 0.980 0 0.000 0.000 0.020
#> SRR1643412 1 0.0510 0.956 0.984 0 0.000 0.000 0.016
#> SRR1643413 1 0.0609 0.952 0.980 0 0.000 0.000 0.020
#> SRR1643414 1 0.0609 0.952 0.980 0 0.000 0.000 0.020
#> SRR1643415 1 0.0609 0.952 0.980 0 0.000 0.000 0.020
#> SRR1643416 1 0.0609 0.952 0.980 0 0.000 0.000 0.020
#> SRR1643417 1 0.0609 0.952 0.980 0 0.000 0.000 0.020
#> SRR1643418 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643419 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643420 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643421 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643422 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643423 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643424 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643425 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643426 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643427 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643428 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643429 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643430 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643431 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643432 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643433 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643434 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643435 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643436 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643437 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643438 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643439 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643440 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643441 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643442 4 0.0000 0.945 0.000 0 0.000 1.000 0.000
#> SRR1643443 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643505 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0.000 0.000 0.000
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643168 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643169 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643170 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643171 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643172 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643173 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643174 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643175 1 0.3684 0.410 0.628 0 0.000 0.000 0.000 0.372
#> SRR1643176 1 0.3684 0.410 0.628 0 0.000 0.000 0.000 0.372
#> SRR1643177 1 0.3684 0.410 0.628 0 0.000 0.000 0.000 0.372
#> SRR1643178 1 0.3706 0.389 0.620 0 0.000 0.000 0.000 0.380
#> SRR1643180 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643181 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643182 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643183 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643184 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643185 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643186 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643187 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643188 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643189 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643190 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643191 1 0.1267 0.917 0.940 0 0.000 0.000 0.060 0.000
#> SRR1643192 1 0.1267 0.917 0.940 0 0.000 0.000 0.060 0.000
#> SRR1643193 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643194 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643195 1 0.6372 0.520 0.560 0 0.000 0.124 0.096 0.220
#> SRR1643196 1 0.6372 0.520 0.560 0 0.000 0.124 0.096 0.220
#> SRR1643197 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643198 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643199 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643200 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643201 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643202 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643203 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643204 1 0.2092 0.903 0.876 0 0.000 0.000 0.124 0.000
#> SRR1643205 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643206 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643207 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643208 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643209 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643210 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643211 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643212 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643213 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643214 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643215 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643216 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643217 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643218 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643219 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643220 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643221 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643222 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643223 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643224 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643225 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643226 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643227 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643228 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643229 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643230 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643231 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643232 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643233 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643234 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643235 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643236 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643237 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643238 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643239 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643240 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643241 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643242 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643243 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643245 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643246 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643247 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643248 3 0.0000 0.998 0.000 0 1.000 0.000 0.000 0.000
#> SRR1643249 3 0.2563 0.891 0.028 0 0.892 0.000 0.044 0.036
#> SRR1643250 6 0.3869 0.254 0.000 0 0.000 0.500 0.000 0.500
#> SRR1643251 4 0.3869 -0.278 0.000 0 0.000 0.500 0.000 0.500
#> SRR1643252 4 0.3867 -0.237 0.000 0 0.000 0.512 0.000 0.488
#> SRR1643253 6 0.3868 0.268 0.000 0 0.000 0.496 0.000 0.504
#> SRR1643254 6 0.3868 0.268 0.000 0 0.000 0.496 0.000 0.504
#> SRR1643255 4 0.3868 -0.251 0.000 0 0.000 0.508 0.000 0.492
#> SRR1643256 6 0.3868 0.268 0.000 0 0.000 0.496 0.000 0.504
#> SRR1643257 6 0.3868 0.268 0.000 0 0.000 0.496 0.000 0.504
#> SRR1643258 6 0.3867 0.288 0.000 0 0.000 0.488 0.000 0.512
#> SRR1643259 6 0.3868 0.268 0.000 0 0.000 0.496 0.000 0.504
#> SRR1643260 6 0.3868 0.281 0.000 0 0.000 0.492 0.000 0.508
#> SRR1643261 6 0.3868 0.281 0.000 0 0.000 0.492 0.000 0.508
#> SRR1643262 4 0.1444 0.794 0.000 0 0.000 0.928 0.000 0.072
#> SRR1643263 4 0.1444 0.794 0.000 0 0.000 0.928 0.000 0.072
#> SRR1643264 4 0.1444 0.794 0.000 0 0.000 0.928 0.000 0.072
#> SRR1643266 4 0.1444 0.794 0.000 0 0.000 0.928 0.000 0.072
#> SRR1643267 4 0.1444 0.794 0.000 0 0.000 0.928 0.000 0.072
#> SRR1643268 4 0.1863 0.765 0.000 0 0.000 0.896 0.000 0.104
#> SRR1643269 4 0.1501 0.791 0.000 0 0.000 0.924 0.000 0.076
#> SRR1643270 4 0.1444 0.794 0.000 0 0.000 0.928 0.000 0.072
#> SRR1643271 4 0.1444 0.794 0.000 0 0.000 0.928 0.000 0.072
#> SRR1643272 4 0.1444 0.794 0.000 0 0.000 0.928 0.000 0.072
#> SRR1643273 6 0.2260 0.850 0.000 0 0.000 0.140 0.000 0.860
#> SRR1643274 6 0.2219 0.851 0.000 0 0.000 0.136 0.000 0.864
#> SRR1643275 6 0.2300 0.849 0.000 0 0.000 0.144 0.000 0.856
#> SRR1643276 6 0.2178 0.851 0.000 0 0.000 0.132 0.000 0.868
#> SRR1643277 6 0.2300 0.849 0.000 0 0.000 0.144 0.000 0.856
#> SRR1643278 6 0.2416 0.844 0.000 0 0.000 0.156 0.000 0.844
#> SRR1643279 6 0.2300 0.849 0.000 0 0.000 0.144 0.000 0.856
#> SRR1643280 6 0.2300 0.849 0.000 0 0.000 0.144 0.000 0.856
#> SRR1643281 6 0.2260 0.850 0.000 0 0.000 0.140 0.000 0.860
#> SRR1643282 6 0.2178 0.851 0.000 0 0.000 0.132 0.000 0.868
#> SRR1643283 6 0.2300 0.849 0.000 0 0.000 0.144 0.000 0.856
#> SRR1643284 6 0.2300 0.849 0.000 0 0.000 0.144 0.000 0.856
#> SRR1643285 6 0.2260 0.851 0.000 0 0.000 0.140 0.000 0.860
#> SRR1643286 6 0.2300 0.849 0.000 0 0.000 0.144 0.000 0.856
#> SRR1643287 4 0.3563 0.432 0.000 0 0.000 0.664 0.336 0.000
#> SRR1643288 4 0.3563 0.432 0.000 0 0.000 0.664 0.336 0.000
#> SRR1643289 4 0.3563 0.432 0.000 0 0.000 0.664 0.336 0.000
#> SRR1643290 4 0.3563 0.432 0.000 0 0.000 0.664 0.336 0.000
#> SRR1643291 4 0.3563 0.432 0.000 0 0.000 0.664 0.336 0.000
#> SRR1643292 4 0.3563 0.432 0.000 0 0.000 0.664 0.336 0.000
#> SRR1643293 4 0.3563 0.432 0.000 0 0.000 0.664 0.336 0.000
#> SRR1643294 4 0.3563 0.432 0.000 0 0.000 0.664 0.336 0.000
#> SRR1643295 4 0.3563 0.432 0.000 0 0.000 0.664 0.336 0.000
#> SRR1643296 4 0.3563 0.432 0.000 0 0.000 0.664 0.336 0.000
#> SRR1643297 4 0.3563 0.432 0.000 0 0.000 0.664 0.336 0.000
#> SRR1643298 4 0.3563 0.432 0.000 0 0.000 0.664 0.336 0.000
#> SRR1643299 4 0.3563 0.432 0.000 0 0.000 0.664 0.336 0.000
#> SRR1643300 4 0.3563 0.432 0.000 0 0.000 0.664 0.336 0.000
#> SRR1643301 6 0.2527 0.838 0.000 0 0.000 0.168 0.000 0.832
#> SRR1643302 6 0.2527 0.838 0.000 0 0.000 0.168 0.000 0.832
#> SRR1643303 6 0.2527 0.838 0.000 0 0.000 0.168 0.000 0.832
#> SRR1643304 6 0.2527 0.838 0.000 0 0.000 0.168 0.000 0.832
#> SRR1643305 6 0.2527 0.838 0.000 0 0.000 0.168 0.000 0.832
#> SRR1643306 6 0.2527 0.838 0.000 0 0.000 0.168 0.000 0.832
#> SRR1643307 6 0.2527 0.838 0.000 0 0.000 0.168 0.000 0.832
#> SRR1643308 6 0.2491 0.841 0.000 0 0.000 0.164 0.000 0.836
#> SRR1643309 6 0.2562 0.835 0.000 0 0.000 0.172 0.000 0.828
#> SRR1643310 6 0.2527 0.838 0.000 0 0.000 0.168 0.000 0.832
#> SRR1643311 6 0.2597 0.831 0.000 0 0.000 0.176 0.000 0.824
#> SRR1643312 6 0.2527 0.838 0.000 0 0.000 0.168 0.000 0.832
#> SRR1643313 6 0.2527 0.838 0.000 0 0.000 0.168 0.000 0.832
#> SRR1643314 6 0.0363 0.849 0.000 0 0.000 0.012 0.000 0.988
#> SRR1643315 6 0.0363 0.849 0.000 0 0.000 0.012 0.000 0.988
#> SRR1643316 6 0.0363 0.849 0.000 0 0.000 0.012 0.000 0.988
#> SRR1643317 6 0.0363 0.849 0.000 0 0.000 0.012 0.000 0.988
#> SRR1643318 6 0.0363 0.849 0.000 0 0.000 0.012 0.000 0.988
#> SRR1643319 6 0.2558 0.844 0.028 0 0.000 0.104 0.000 0.868
#> SRR1643320 6 0.0363 0.849 0.000 0 0.000 0.012 0.000 0.988
#> SRR1643321 6 0.0363 0.849 0.000 0 0.000 0.012 0.000 0.988
#> SRR1643322 6 0.0363 0.849 0.000 0 0.000 0.012 0.000 0.988
#> SRR1643323 6 0.0363 0.849 0.000 0 0.000 0.012 0.000 0.988
#> SRR1643324 6 0.0363 0.849 0.000 0 0.000 0.012 0.000 0.988
#> SRR1643325 6 0.0363 0.849 0.000 0 0.000 0.012 0.000 0.988
#> SRR1643326 6 0.0363 0.849 0.000 0 0.000 0.012 0.000 0.988
#> SRR1643327 6 0.0363 0.849 0.000 0 0.000 0.012 0.000 0.988
#> SRR1643328 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643329 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643330 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643331 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643332 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643333 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643334 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643335 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643336 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643337 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643338 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643339 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643340 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643341 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643342 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643343 6 0.0000 0.844 0.000 0 0.000 0.000 0.000 1.000
#> SRR1643344 6 0.0000 0.844 0.000 0 0.000 0.000 0.000 1.000
#> SRR1643345 6 0.0000 0.844 0.000 0 0.000 0.000 0.000 1.000
#> SRR1643346 6 0.0000 0.844 0.000 0 0.000 0.000 0.000 1.000
#> SRR1643347 6 0.0000 0.844 0.000 0 0.000 0.000 0.000 1.000
#> SRR1643348 6 0.0000 0.844 0.000 0 0.000 0.000 0.000 1.000
#> SRR1643349 6 0.0000 0.844 0.000 0 0.000 0.000 0.000 1.000
#> SRR1643350 6 0.0000 0.844 0.000 0 0.000 0.000 0.000 1.000
#> SRR1643351 6 0.0000 0.844 0.000 0 0.000 0.000 0.000 1.000
#> SRR1643352 6 0.0000 0.844 0.000 0 0.000 0.000 0.000 1.000
#> SRR1643353 6 0.0000 0.844 0.000 0 0.000 0.000 0.000 1.000
#> SRR1643354 6 0.0000 0.844 0.000 0 0.000 0.000 0.000 1.000
#> SRR1643355 6 0.0000 0.844 0.000 0 0.000 0.000 0.000 1.000
#> SRR1643356 6 0.0000 0.844 0.000 0 0.000 0.000 0.000 1.000
#> SRR1643357 6 0.0000 0.844 0.000 0 0.000 0.000 0.000 1.000
#> SRR1643358 4 0.0713 0.815 0.000 0 0.000 0.972 0.000 0.028
#> SRR1643359 4 0.0713 0.815 0.000 0 0.000 0.972 0.000 0.028
#> SRR1643360 4 0.0713 0.815 0.000 0 0.000 0.972 0.000 0.028
#> SRR1643361 4 0.0713 0.815 0.000 0 0.000 0.972 0.000 0.028
#> SRR1643362 4 0.0713 0.815 0.000 0 0.000 0.972 0.000 0.028
#> SRR1643363 4 0.0713 0.815 0.000 0 0.000 0.972 0.000 0.028
#> SRR1643364 4 0.3636 0.462 0.004 0 0.000 0.676 0.000 0.320
#> SRR1643365 4 0.0713 0.815 0.000 0 0.000 0.972 0.000 0.028
#> SRR1643366 4 0.0713 0.815 0.000 0 0.000 0.972 0.000 0.028
#> SRR1643367 4 0.0713 0.815 0.000 0 0.000 0.972 0.000 0.028
#> SRR1643368 4 0.0713 0.815 0.000 0 0.000 0.972 0.000 0.028
#> SRR1643369 4 0.0713 0.815 0.000 0 0.000 0.972 0.000 0.028
#> SRR1643370 4 0.0713 0.815 0.000 0 0.000 0.972 0.000 0.028
#> SRR1643371 4 0.0363 0.814 0.000 0 0.000 0.988 0.000 0.012
#> SRR1643372 4 0.0713 0.815 0.000 0 0.000 0.972 0.000 0.028
#> SRR1643373 4 0.0000 0.812 0.000 0 0.000 1.000 0.000 0.000
#> SRR1643374 4 0.0000 0.812 0.000 0 0.000 1.000 0.000 0.000
#> SRR1643375 4 0.0000 0.812 0.000 0 0.000 1.000 0.000 0.000
#> SRR1643376 4 0.0000 0.812 0.000 0 0.000 1.000 0.000 0.000
#> SRR1643377 4 0.0000 0.812 0.000 0 0.000 1.000 0.000 0.000
#> SRR1643378 4 0.0000 0.812 0.000 0 0.000 1.000 0.000 0.000
#> SRR1643379 4 0.0000 0.812 0.000 0 0.000 1.000 0.000 0.000
#> SRR1643380 4 0.0000 0.812 0.000 0 0.000 1.000 0.000 0.000
#> SRR1643381 4 0.4084 0.192 0.012 0 0.000 0.588 0.000 0.400
#> SRR1643382 4 0.0000 0.812 0.000 0 0.000 1.000 0.000 0.000
#> SRR1643383 4 0.0000 0.812 0.000 0 0.000 1.000 0.000 0.000
#> SRR1643384 4 0.0000 0.812 0.000 0 0.000 1.000 0.000 0.000
#> SRR1643385 4 0.0000 0.812 0.000 0 0.000 1.000 0.000 0.000
#> SRR1643386 4 0.0000 0.812 0.000 0 0.000 1.000 0.000 0.000
#> SRR1643387 4 0.0000 0.812 0.000 0 0.000 1.000 0.000 0.000
#> SRR1643388 4 0.0000 0.812 0.000 0 0.000 1.000 0.000 0.000
#> SRR1643389 4 0.0000 0.812 0.000 0 0.000 1.000 0.000 0.000
#> SRR1643390 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643391 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643392 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643393 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643394 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643395 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643396 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643397 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643398 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643399 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643400 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643401 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643402 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643403 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643404 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643405 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643406 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643407 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643408 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643409 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643410 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643411 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643412 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643413 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643414 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643415 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643416 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643417 1 0.0000 0.929 1.000 0 0.000 0.000 0.000 0.000
#> SRR1643418 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643419 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643420 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643421 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643422 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643423 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643424 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643425 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643426 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643427 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643428 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643429 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643430 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643431 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643432 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643433 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643434 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643435 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643436 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643437 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643438 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643439 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643440 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643441 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643442 5 0.2092 1.000 0.000 0 0.000 0.124 0.876 0.000
#> SRR1643443 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643505 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0.000 0.000 0.000 0.000
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["MAD", "NMF"]
# you can also extract it by
# res = res_list["MAD:NMF"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'MAD' method.
#> Subgroups are detected by 'NMF' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 4.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.4350 0.566 0.566
#> 3 3 0.886 0.910 0.958 0.4184 0.805 0.655
#> 4 4 0.909 0.940 0.960 0.1619 0.825 0.575
#> 5 5 0.883 0.765 0.899 0.0497 0.997 0.989
#> 6 6 0.823 0.827 0.854 0.0364 0.953 0.828
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 4
#> attr(,"optional")
#> [1] 2
There is also optional best \(k\) = 2 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.1529 0.923 0.960 0 0.040
#> SRR1643168 1 0.1753 0.914 0.952 0 0.048
#> SRR1643169 1 0.1753 0.914 0.952 0 0.048
#> SRR1643170 1 0.1964 0.905 0.944 0 0.056
#> SRR1643171 3 0.4931 0.768 0.232 0 0.768
#> SRR1643172 3 0.4702 0.781 0.212 0 0.788
#> SRR1643173 3 0.4887 0.771 0.228 0 0.772
#> SRR1643174 3 0.4796 0.776 0.220 0 0.780
#> SRR1643175 1 0.0424 0.955 0.992 0 0.008
#> SRR1643176 1 0.0424 0.955 0.992 0 0.008
#> SRR1643177 1 0.0424 0.955 0.992 0 0.008
#> SRR1643178 1 0.0424 0.955 0.992 0 0.008
#> SRR1643180 3 0.5058 0.759 0.244 0 0.756
#> SRR1643181 3 0.5058 0.759 0.244 0 0.756
#> SRR1643182 3 0.5016 0.762 0.240 0 0.760
#> SRR1643183 1 0.5905 0.344 0.648 0 0.352
#> SRR1643184 1 0.6008 0.279 0.628 0 0.372
#> SRR1643185 1 0.6111 0.191 0.604 0 0.396
#> SRR1643186 1 0.6026 0.264 0.624 0 0.376
#> SRR1643187 1 0.0000 0.962 1.000 0 0.000
#> SRR1643188 1 0.0000 0.962 1.000 0 0.000
#> SRR1643189 1 0.0000 0.962 1.000 0 0.000
#> SRR1643190 1 0.0000 0.962 1.000 0 0.000
#> SRR1643191 3 0.6286 0.355 0.464 0 0.536
#> SRR1643192 3 0.6252 0.413 0.444 0 0.556
#> SRR1643193 1 0.0000 0.962 1.000 0 0.000
#> SRR1643194 1 0.0000 0.962 1.000 0 0.000
#> SRR1643195 1 0.0000 0.962 1.000 0 0.000
#> SRR1643196 1 0.0000 0.962 1.000 0 0.000
#> SRR1643197 1 0.0892 0.943 0.980 0 0.020
#> SRR1643198 1 0.0892 0.943 0.980 0 0.020
#> SRR1643199 1 0.2066 0.900 0.940 0 0.060
#> SRR1643200 1 0.2066 0.900 0.940 0 0.060
#> SRR1643201 1 0.0000 0.962 1.000 0 0.000
#> SRR1643202 1 0.0000 0.962 1.000 0 0.000
#> SRR1643203 1 0.0237 0.959 0.996 0 0.004
#> SRR1643204 1 0.0237 0.959 0.996 0 0.004
#> SRR1643205 3 0.0000 0.840 0.000 0 1.000
#> SRR1643206 3 0.0000 0.840 0.000 0 1.000
#> SRR1643207 3 0.0000 0.840 0.000 0 1.000
#> SRR1643208 3 0.0000 0.840 0.000 0 1.000
#> SRR1643209 3 0.0000 0.840 0.000 0 1.000
#> SRR1643210 3 0.0000 0.840 0.000 0 1.000
#> SRR1643211 3 0.0000 0.840 0.000 0 1.000
#> SRR1643212 3 0.0000 0.840 0.000 0 1.000
#> SRR1643213 3 0.0000 0.840 0.000 0 1.000
#> SRR1643214 3 0.0000 0.840 0.000 0 1.000
#> SRR1643215 3 0.0000 0.840 0.000 0 1.000
#> SRR1643216 3 0.0000 0.840 0.000 0 1.000
#> SRR1643217 3 0.0000 0.840 0.000 0 1.000
#> SRR1643218 3 0.0000 0.840 0.000 0 1.000
#> SRR1643219 3 0.0000 0.840 0.000 0 1.000
#> SRR1643220 3 0.0000 0.840 0.000 0 1.000
#> SRR1643221 3 0.0000 0.840 0.000 0 1.000
#> SRR1643222 3 0.0000 0.840 0.000 0 1.000
#> SRR1643223 3 0.0000 0.840 0.000 0 1.000
#> SRR1643224 3 0.0000 0.840 0.000 0 1.000
#> SRR1643225 3 0.0000 0.840 0.000 0 1.000
#> SRR1643226 3 0.0000 0.840 0.000 0 1.000
#> SRR1643227 3 0.0000 0.840 0.000 0 1.000
#> SRR1643228 3 0.0000 0.840 0.000 0 1.000
#> SRR1643229 3 0.0000 0.840 0.000 0 1.000
#> SRR1643230 3 0.0000 0.840 0.000 0 1.000
#> SRR1643231 3 0.0000 0.840 0.000 0 1.000
#> SRR1643232 3 0.0000 0.840 0.000 0 1.000
#> SRR1643233 3 0.0000 0.840 0.000 0 1.000
#> SRR1643234 3 0.0000 0.840 0.000 0 1.000
#> SRR1643235 3 0.0000 0.840 0.000 0 1.000
#> SRR1643236 3 0.0000 0.840 0.000 0 1.000
#> SRR1643237 3 0.0000 0.840 0.000 0 1.000
#> SRR1643238 3 0.0000 0.840 0.000 0 1.000
#> SRR1643239 3 0.0000 0.840 0.000 0 1.000
#> SRR1643240 3 0.0000 0.840 0.000 0 1.000
#> SRR1643241 3 0.0000 0.840 0.000 0 1.000
#> SRR1643242 3 0.0000 0.840 0.000 0 1.000
#> SRR1643243 3 0.0000 0.840 0.000 0 1.000
#> SRR1643245 3 0.0000 0.840 0.000 0 1.000
#> SRR1643246 3 0.0000 0.840 0.000 0 1.000
#> SRR1643247 3 0.0000 0.840 0.000 0 1.000
#> SRR1643248 3 0.0000 0.840 0.000 0 1.000
#> SRR1643249 3 0.0000 0.840 0.000 0 1.000
#> SRR1643250 1 0.0000 0.962 1.000 0 0.000
#> SRR1643251 1 0.0000 0.962 1.000 0 0.000
#> SRR1643252 1 0.0000 0.962 1.000 0 0.000
#> SRR1643253 1 0.0000 0.962 1.000 0 0.000
#> SRR1643254 1 0.0000 0.962 1.000 0 0.000
#> SRR1643255 1 0.0000 0.962 1.000 0 0.000
#> SRR1643256 1 0.0000 0.962 1.000 0 0.000
#> SRR1643257 1 0.0000 0.962 1.000 0 0.000
#> SRR1643258 1 0.0000 0.962 1.000 0 0.000
#> SRR1643259 1 0.0000 0.962 1.000 0 0.000
#> SRR1643260 1 0.0000 0.962 1.000 0 0.000
#> SRR1643261 1 0.0000 0.962 1.000 0 0.000
#> SRR1643262 1 0.0000 0.962 1.000 0 0.000
#> SRR1643263 1 0.0000 0.962 1.000 0 0.000
#> SRR1643264 1 0.0000 0.962 1.000 0 0.000
#> SRR1643266 1 0.0000 0.962 1.000 0 0.000
#> SRR1643267 1 0.0000 0.962 1.000 0 0.000
#> SRR1643268 1 0.0000 0.962 1.000 0 0.000
#> SRR1643269 1 0.0000 0.962 1.000 0 0.000
#> SRR1643270 1 0.0000 0.962 1.000 0 0.000
#> SRR1643271 1 0.0000 0.962 1.000 0 0.000
#> SRR1643272 1 0.0000 0.962 1.000 0 0.000
#> SRR1643273 1 0.0000 0.962 1.000 0 0.000
#> SRR1643274 1 0.0000 0.962 1.000 0 0.000
#> SRR1643275 1 0.0000 0.962 1.000 0 0.000
#> SRR1643276 1 0.0000 0.962 1.000 0 0.000
#> SRR1643277 1 0.0000 0.962 1.000 0 0.000
#> SRR1643278 1 0.0000 0.962 1.000 0 0.000
#> SRR1643279 1 0.0000 0.962 1.000 0 0.000
#> SRR1643280 1 0.0000 0.962 1.000 0 0.000
#> SRR1643281 1 0.0000 0.962 1.000 0 0.000
#> SRR1643282 1 0.0000 0.962 1.000 0 0.000
#> SRR1643283 1 0.0000 0.962 1.000 0 0.000
#> SRR1643284 1 0.0000 0.962 1.000 0 0.000
#> SRR1643285 1 0.0000 0.962 1.000 0 0.000
#> SRR1643286 1 0.0000 0.962 1.000 0 0.000
#> SRR1643287 1 0.0000 0.962 1.000 0 0.000
#> SRR1643288 1 0.0000 0.962 1.000 0 0.000
#> SRR1643289 1 0.0000 0.962 1.000 0 0.000
#> SRR1643290 1 0.0000 0.962 1.000 0 0.000
#> SRR1643291 1 0.0000 0.962 1.000 0 0.000
#> SRR1643292 1 0.0000 0.962 1.000 0 0.000
#> SRR1643293 1 0.0000 0.962 1.000 0 0.000
#> SRR1643294 1 0.0000 0.962 1.000 0 0.000
#> SRR1643295 1 0.0000 0.962 1.000 0 0.000
#> SRR1643296 1 0.0000 0.962 1.000 0 0.000
#> SRR1643297 1 0.0000 0.962 1.000 0 0.000
#> SRR1643298 1 0.0000 0.962 1.000 0 0.000
#> SRR1643299 1 0.0000 0.962 1.000 0 0.000
#> SRR1643300 1 0.0000 0.962 1.000 0 0.000
#> SRR1643301 1 0.0000 0.962 1.000 0 0.000
#> SRR1643302 1 0.0000 0.962 1.000 0 0.000
#> SRR1643303 1 0.0000 0.962 1.000 0 0.000
#> SRR1643304 1 0.0000 0.962 1.000 0 0.000
#> SRR1643305 1 0.0000 0.962 1.000 0 0.000
#> SRR1643306 1 0.0000 0.962 1.000 0 0.000
#> SRR1643307 1 0.0000 0.962 1.000 0 0.000
#> SRR1643308 1 0.0000 0.962 1.000 0 0.000
#> SRR1643309 1 0.0000 0.962 1.000 0 0.000
#> SRR1643310 1 0.0000 0.962 1.000 0 0.000
#> SRR1643311 1 0.0000 0.962 1.000 0 0.000
#> SRR1643312 1 0.0000 0.962 1.000 0 0.000
#> SRR1643313 1 0.0000 0.962 1.000 0 0.000
#> SRR1643314 1 0.0000 0.962 1.000 0 0.000
#> SRR1643315 1 0.0000 0.962 1.000 0 0.000
#> SRR1643316 1 0.0000 0.962 1.000 0 0.000
#> SRR1643317 1 0.0000 0.962 1.000 0 0.000
#> SRR1643318 1 0.0000 0.962 1.000 0 0.000
#> SRR1643319 1 0.0000 0.962 1.000 0 0.000
#> SRR1643320 1 0.0000 0.962 1.000 0 0.000
#> SRR1643321 1 0.0000 0.962 1.000 0 0.000
#> SRR1643322 1 0.0000 0.962 1.000 0 0.000
#> SRR1643323 1 0.0000 0.962 1.000 0 0.000
#> SRR1643324 1 0.0000 0.962 1.000 0 0.000
#> SRR1643325 1 0.0000 0.962 1.000 0 0.000
#> SRR1643326 1 0.0000 0.962 1.000 0 0.000
#> SRR1643327 1 0.0000 0.962 1.000 0 0.000
#> SRR1643328 3 0.5291 0.735 0.268 0 0.732
#> SRR1643329 3 0.5016 0.762 0.240 0 0.760
#> SRR1643330 3 0.4605 0.785 0.204 0 0.796
#> SRR1643331 3 0.6154 0.506 0.408 0 0.592
#> SRR1643332 3 0.4702 0.781 0.212 0 0.788
#> SRR1643333 3 0.6168 0.497 0.412 0 0.588
#> SRR1643334 3 0.6111 0.533 0.396 0 0.604
#> SRR1643335 3 0.6215 0.457 0.428 0 0.572
#> SRR1643336 3 0.5988 0.589 0.368 0 0.632
#> SRR1643337 3 0.6079 0.550 0.388 0 0.612
#> SRR1643338 3 0.5621 0.686 0.308 0 0.692
#> SRR1643339 3 0.5968 0.596 0.364 0 0.636
#> SRR1643340 3 0.6235 0.436 0.436 0 0.564
#> SRR1643341 3 0.5706 0.668 0.320 0 0.680
#> SRR1643342 3 0.5968 0.596 0.364 0 0.636
#> SRR1643343 1 0.0000 0.962 1.000 0 0.000
#> SRR1643344 1 0.0000 0.962 1.000 0 0.000
#> SRR1643345 1 0.0000 0.962 1.000 0 0.000
#> SRR1643346 1 0.0000 0.962 1.000 0 0.000
#> SRR1643347 1 0.0000 0.962 1.000 0 0.000
#> SRR1643348 1 0.0000 0.962 1.000 0 0.000
#> SRR1643349 1 0.0000 0.962 1.000 0 0.000
#> SRR1643350 1 0.0000 0.962 1.000 0 0.000
#> SRR1643351 1 0.0000 0.962 1.000 0 0.000
#> SRR1643352 1 0.0000 0.962 1.000 0 0.000
#> SRR1643353 1 0.0000 0.962 1.000 0 0.000
#> SRR1643354 1 0.0000 0.962 1.000 0 0.000
#> SRR1643355 1 0.0000 0.962 1.000 0 0.000
#> SRR1643356 1 0.0000 0.962 1.000 0 0.000
#> SRR1643357 1 0.0000 0.962 1.000 0 0.000
#> SRR1643358 1 0.0000 0.962 1.000 0 0.000
#> SRR1643359 1 0.0000 0.962 1.000 0 0.000
#> SRR1643360 1 0.0000 0.962 1.000 0 0.000
#> SRR1643361 1 0.0000 0.962 1.000 0 0.000
#> SRR1643362 1 0.0000 0.962 1.000 0 0.000
#> SRR1643363 1 0.0000 0.962 1.000 0 0.000
#> SRR1643364 1 0.0000 0.962 1.000 0 0.000
#> SRR1643365 1 0.0000 0.962 1.000 0 0.000
#> SRR1643366 1 0.0000 0.962 1.000 0 0.000
#> SRR1643367 1 0.0000 0.962 1.000 0 0.000
#> SRR1643368 1 0.0000 0.962 1.000 0 0.000
#> SRR1643369 1 0.0000 0.962 1.000 0 0.000
#> SRR1643370 1 0.0000 0.962 1.000 0 0.000
#> SRR1643371 1 0.0000 0.962 1.000 0 0.000
#> SRR1643372 1 0.0000 0.962 1.000 0 0.000
#> SRR1643373 1 0.0000 0.962 1.000 0 0.000
#> SRR1643374 1 0.0000 0.962 1.000 0 0.000
#> SRR1643375 1 0.0000 0.962 1.000 0 0.000
#> SRR1643376 1 0.0000 0.962 1.000 0 0.000
#> SRR1643377 1 0.0000 0.962 1.000 0 0.000
#> SRR1643378 1 0.0000 0.962 1.000 0 0.000
#> SRR1643379 1 0.0000 0.962 1.000 0 0.000
#> SRR1643380 1 0.0000 0.962 1.000 0 0.000
#> SRR1643381 1 0.0000 0.962 1.000 0 0.000
#> SRR1643382 1 0.0000 0.962 1.000 0 0.000
#> SRR1643383 1 0.0000 0.962 1.000 0 0.000
#> SRR1643384 1 0.0000 0.962 1.000 0 0.000
#> SRR1643385 1 0.0000 0.962 1.000 0 0.000
#> SRR1643386 1 0.0000 0.962 1.000 0 0.000
#> SRR1643387 1 0.0000 0.962 1.000 0 0.000
#> SRR1643388 1 0.0000 0.962 1.000 0 0.000
#> SRR1643389 1 0.0000 0.962 1.000 0 0.000
#> SRR1643390 1 0.5529 0.502 0.704 0 0.296
#> SRR1643391 1 0.5138 0.602 0.748 0 0.252
#> SRR1643392 1 0.5785 0.406 0.668 0 0.332
#> SRR1643393 1 0.5560 0.492 0.700 0 0.300
#> SRR1643394 1 0.5216 0.585 0.740 0 0.260
#> SRR1643395 1 0.5560 0.492 0.700 0 0.300
#> SRR1643396 1 0.4291 0.734 0.820 0 0.180
#> SRR1643397 1 0.4974 0.634 0.764 0 0.236
#> SRR1643398 1 0.4750 0.672 0.784 0 0.216
#> SRR1643399 1 0.4842 0.658 0.776 0 0.224
#> SRR1643400 1 0.5859 0.371 0.656 0 0.344
#> SRR1643401 1 0.5678 0.451 0.684 0 0.316
#> SRR1643402 1 0.4291 0.734 0.820 0 0.180
#> SRR1643403 1 0.5785 0.406 0.668 0 0.332
#> SRR1643404 1 0.5098 0.610 0.752 0 0.248
#> SRR1643405 3 0.5098 0.755 0.248 0 0.752
#> SRR1643406 3 0.5016 0.762 0.240 0 0.760
#> SRR1643407 3 0.5254 0.739 0.264 0 0.736
#> SRR1643408 3 0.4504 0.788 0.196 0 0.804
#> SRR1643409 3 0.5621 0.687 0.308 0 0.692
#> SRR1643410 3 0.6180 0.487 0.416 0 0.584
#> SRR1643411 3 0.4750 0.779 0.216 0 0.784
#> SRR1643412 3 0.4842 0.774 0.224 0 0.776
#> SRR1643413 3 0.5591 0.692 0.304 0 0.696
#> SRR1643414 3 0.5560 0.697 0.300 0 0.700
#> SRR1643415 3 0.4555 0.786 0.200 0 0.800
#> SRR1643416 3 0.5431 0.717 0.284 0 0.716
#> SRR1643417 3 0.5098 0.755 0.248 0 0.752
#> SRR1643418 1 0.0000 0.962 1.000 0 0.000
#> SRR1643419 1 0.0000 0.962 1.000 0 0.000
#> SRR1643420 1 0.0000 0.962 1.000 0 0.000
#> SRR1643421 1 0.0000 0.962 1.000 0 0.000
#> SRR1643422 1 0.0000 0.962 1.000 0 0.000
#> SRR1643423 1 0.0000 0.962 1.000 0 0.000
#> SRR1643424 1 0.0000 0.962 1.000 0 0.000
#> SRR1643425 1 0.0000 0.962 1.000 0 0.000
#> SRR1643426 1 0.0000 0.962 1.000 0 0.000
#> SRR1643427 1 0.0000 0.962 1.000 0 0.000
#> SRR1643428 1 0.0000 0.962 1.000 0 0.000
#> SRR1643429 1 0.0000 0.962 1.000 0 0.000
#> SRR1643430 1 0.0000 0.962 1.000 0 0.000
#> SRR1643431 1 0.0000 0.962 1.000 0 0.000
#> SRR1643432 1 0.0000 0.962 1.000 0 0.000
#> SRR1643433 1 0.0000 0.962 1.000 0 0.000
#> SRR1643434 1 0.0000 0.962 1.000 0 0.000
#> SRR1643435 1 0.0000 0.962 1.000 0 0.000
#> SRR1643436 1 0.0000 0.962 1.000 0 0.000
#> SRR1643437 1 0.0000 0.962 1.000 0 0.000
#> SRR1643438 1 0.0000 0.962 1.000 0 0.000
#> SRR1643439 1 0.0000 0.962 1.000 0 0.000
#> SRR1643440 1 0.0000 0.962 1.000 0 0.000
#> SRR1643441 1 0.0000 0.962 1.000 0 0.000
#> SRR1643442 1 0.0000 0.962 1.000 0 0.000
#> SRR1643443 2 0.0000 1.000 0.000 1 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0.000
#> SRR1643505 2 0.0000 1.000 0.000 1 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.0376 0.918 0.992 0.000 0.004 0.004
#> SRR1643168 1 0.0376 0.918 0.992 0.000 0.004 0.004
#> SRR1643169 1 0.0376 0.918 0.992 0.000 0.004 0.004
#> SRR1643170 1 0.0376 0.918 0.992 0.000 0.004 0.004
#> SRR1643171 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643172 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643173 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643174 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643175 1 0.1302 0.913 0.956 0.000 0.000 0.044
#> SRR1643176 1 0.1389 0.912 0.952 0.000 0.000 0.048
#> SRR1643177 1 0.1302 0.913 0.956 0.000 0.000 0.044
#> SRR1643178 1 0.1302 0.913 0.956 0.000 0.000 0.044
#> SRR1643180 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643181 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643182 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643183 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643184 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643185 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643186 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643187 1 0.1118 0.914 0.964 0.000 0.000 0.036
#> SRR1643188 1 0.1118 0.914 0.964 0.000 0.000 0.036
#> SRR1643189 1 0.1118 0.914 0.964 0.000 0.000 0.036
#> SRR1643190 1 0.1118 0.914 0.964 0.000 0.000 0.036
#> SRR1643191 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643192 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643193 1 0.0817 0.916 0.976 0.000 0.000 0.024
#> SRR1643194 1 0.0817 0.916 0.976 0.000 0.000 0.024
#> SRR1643195 1 0.4746 0.493 0.632 0.000 0.000 0.368
#> SRR1643196 1 0.4746 0.493 0.632 0.000 0.000 0.368
#> SRR1643197 1 0.0336 0.918 0.992 0.000 0.000 0.008
#> SRR1643198 1 0.0336 0.918 0.992 0.000 0.000 0.008
#> SRR1643199 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643200 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643201 1 0.2011 0.902 0.920 0.000 0.000 0.080
#> SRR1643202 1 0.2011 0.902 0.920 0.000 0.000 0.080
#> SRR1643203 1 0.0336 0.918 0.992 0.000 0.000 0.008
#> SRR1643204 1 0.0336 0.918 0.992 0.000 0.000 0.008
#> SRR1643205 3 0.0707 0.993 0.020 0.000 0.980 0.000
#> SRR1643206 3 0.0707 0.993 0.020 0.000 0.980 0.000
#> SRR1643207 3 0.0707 0.993 0.020 0.000 0.980 0.000
#> SRR1643208 3 0.0707 0.993 0.020 0.000 0.980 0.000
#> SRR1643209 3 0.0921 0.989 0.028 0.000 0.972 0.000
#> SRR1643210 3 0.0921 0.989 0.028 0.000 0.972 0.000
#> SRR1643211 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643212 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643213 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643214 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643215 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643216 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643217 3 0.0592 0.994 0.016 0.000 0.984 0.000
#> SRR1643218 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643219 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643220 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643221 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643222 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643223 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643224 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643225 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643226 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643227 3 0.0707 0.993 0.020 0.000 0.980 0.000
#> SRR1643228 3 0.0707 0.993 0.020 0.000 0.980 0.000
#> SRR1643229 3 0.0921 0.989 0.028 0.000 0.972 0.000
#> SRR1643230 3 0.0707 0.993 0.020 0.000 0.980 0.000
#> SRR1643231 3 0.0707 0.993 0.020 0.000 0.980 0.000
#> SRR1643232 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643233 3 0.1022 0.986 0.032 0.000 0.968 0.000
#> SRR1643234 3 0.1022 0.986 0.032 0.000 0.968 0.000
#> SRR1643235 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643236 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643237 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643238 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643239 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643240 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643241 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643242 3 0.1022 0.986 0.032 0.000 0.968 0.000
#> SRR1643243 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643245 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643246 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643247 3 0.0469 0.995 0.012 0.000 0.988 0.000
#> SRR1643248 3 0.0817 0.991 0.024 0.000 0.976 0.000
#> SRR1643249 3 0.1637 0.961 0.060 0.000 0.940 0.000
#> SRR1643250 4 0.1716 0.934 0.064 0.000 0.000 0.936
#> SRR1643251 4 0.1716 0.934 0.064 0.000 0.000 0.936
#> SRR1643252 4 0.1716 0.934 0.064 0.000 0.000 0.936
#> SRR1643253 4 0.1716 0.934 0.064 0.000 0.000 0.936
#> SRR1643254 4 0.1792 0.930 0.068 0.000 0.000 0.932
#> SRR1643255 4 0.1716 0.934 0.064 0.000 0.000 0.936
#> SRR1643256 4 0.1716 0.934 0.064 0.000 0.000 0.936
#> SRR1643257 4 0.1716 0.934 0.064 0.000 0.000 0.936
#> SRR1643258 4 0.1792 0.930 0.068 0.000 0.000 0.932
#> SRR1643259 4 0.1716 0.934 0.064 0.000 0.000 0.936
#> SRR1643260 4 0.1716 0.934 0.064 0.000 0.000 0.936
#> SRR1643261 4 0.1716 0.934 0.064 0.000 0.000 0.936
#> SRR1643262 4 0.1302 0.946 0.044 0.000 0.000 0.956
#> SRR1643263 4 0.1302 0.946 0.044 0.000 0.000 0.956
#> SRR1643264 4 0.1302 0.946 0.044 0.000 0.000 0.956
#> SRR1643266 4 0.1118 0.950 0.036 0.000 0.000 0.964
#> SRR1643267 4 0.1302 0.946 0.044 0.000 0.000 0.956
#> SRR1643268 4 0.1302 0.946 0.044 0.000 0.000 0.956
#> SRR1643269 4 0.1302 0.946 0.044 0.000 0.000 0.956
#> SRR1643270 4 0.1302 0.946 0.044 0.000 0.000 0.956
#> SRR1643271 4 0.1302 0.946 0.044 0.000 0.000 0.956
#> SRR1643272 4 0.1302 0.946 0.044 0.000 0.000 0.956
#> SRR1643273 1 0.3764 0.796 0.784 0.000 0.000 0.216
#> SRR1643274 1 0.4222 0.710 0.728 0.000 0.000 0.272
#> SRR1643275 1 0.4040 0.749 0.752 0.000 0.000 0.248
#> SRR1643276 1 0.4193 0.717 0.732 0.000 0.000 0.268
#> SRR1643277 1 0.3726 0.801 0.788 0.000 0.000 0.212
#> SRR1643278 1 0.3486 0.829 0.812 0.000 0.000 0.188
#> SRR1643279 1 0.3801 0.790 0.780 0.000 0.000 0.220
#> SRR1643280 1 0.3873 0.779 0.772 0.000 0.000 0.228
#> SRR1643281 1 0.3726 0.801 0.788 0.000 0.000 0.212
#> SRR1643282 1 0.3726 0.801 0.788 0.000 0.000 0.212
#> SRR1643283 1 0.3486 0.829 0.812 0.000 0.000 0.188
#> SRR1643284 1 0.3649 0.811 0.796 0.000 0.000 0.204
#> SRR1643285 1 0.4134 0.730 0.740 0.000 0.000 0.260
#> SRR1643286 1 0.3356 0.842 0.824 0.000 0.000 0.176
#> SRR1643287 4 0.0707 0.949 0.020 0.000 0.000 0.980
#> SRR1643288 4 0.0707 0.949 0.020 0.000 0.000 0.980
#> SRR1643289 4 0.0707 0.949 0.020 0.000 0.000 0.980
#> SRR1643290 4 0.0707 0.949 0.020 0.000 0.000 0.980
#> SRR1643291 4 0.0707 0.949 0.020 0.000 0.000 0.980
#> SRR1643292 4 0.0707 0.949 0.020 0.000 0.000 0.980
#> SRR1643293 4 0.0921 0.951 0.028 0.000 0.000 0.972
#> SRR1643294 4 0.0817 0.950 0.024 0.000 0.000 0.976
#> SRR1643295 4 0.0707 0.949 0.020 0.000 0.000 0.980
#> SRR1643296 4 0.0817 0.950 0.024 0.000 0.000 0.976
#> SRR1643297 4 0.0707 0.949 0.020 0.000 0.000 0.980
#> SRR1643298 4 0.0707 0.949 0.020 0.000 0.000 0.980
#> SRR1643299 4 0.0707 0.949 0.020 0.000 0.000 0.980
#> SRR1643300 4 0.0817 0.950 0.024 0.000 0.000 0.976
#> SRR1643301 4 0.3726 0.762 0.212 0.000 0.000 0.788
#> SRR1643302 4 0.4250 0.650 0.276 0.000 0.000 0.724
#> SRR1643303 4 0.4008 0.709 0.244 0.000 0.000 0.756
#> SRR1643304 4 0.4164 0.673 0.264 0.000 0.000 0.736
#> SRR1643305 4 0.4522 0.554 0.320 0.000 0.000 0.680
#> SRR1643306 4 0.4193 0.666 0.268 0.000 0.000 0.732
#> SRR1643307 4 0.3649 0.773 0.204 0.000 0.000 0.796
#> SRR1643308 4 0.4304 0.633 0.284 0.000 0.000 0.716
#> SRR1643309 4 0.3569 0.784 0.196 0.000 0.000 0.804
#> SRR1643310 4 0.3801 0.748 0.220 0.000 0.000 0.780
#> SRR1643311 4 0.3649 0.773 0.204 0.000 0.000 0.796
#> SRR1643312 4 0.4761 0.417 0.372 0.000 0.000 0.628
#> SRR1643313 4 0.3764 0.755 0.216 0.000 0.000 0.784
#> SRR1643314 1 0.2868 0.876 0.864 0.000 0.000 0.136
#> SRR1643315 1 0.2921 0.873 0.860 0.000 0.000 0.140
#> SRR1643316 1 0.2760 0.881 0.872 0.000 0.000 0.128
#> SRR1643317 1 0.2814 0.879 0.868 0.000 0.000 0.132
#> SRR1643318 1 0.2760 0.881 0.872 0.000 0.000 0.128
#> SRR1643319 1 0.2704 0.883 0.876 0.000 0.000 0.124
#> SRR1643320 1 0.2704 0.883 0.876 0.000 0.000 0.124
#> SRR1643321 1 0.2868 0.876 0.864 0.000 0.000 0.136
#> SRR1643322 1 0.2814 0.879 0.868 0.000 0.000 0.132
#> SRR1643323 1 0.2814 0.879 0.868 0.000 0.000 0.132
#> SRR1643324 1 0.2760 0.881 0.872 0.000 0.000 0.128
#> SRR1643325 1 0.2760 0.881 0.872 0.000 0.000 0.128
#> SRR1643326 1 0.2868 0.876 0.864 0.000 0.000 0.136
#> SRR1643327 1 0.2704 0.883 0.876 0.000 0.000 0.124
#> SRR1643328 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643329 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643330 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643331 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643332 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643333 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643334 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643335 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643336 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643337 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643338 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643339 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643340 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643341 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643342 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643343 1 0.3172 0.858 0.840 0.000 0.000 0.160
#> SRR1643344 1 0.3074 0.865 0.848 0.000 0.000 0.152
#> SRR1643345 1 0.3219 0.854 0.836 0.000 0.000 0.164
#> SRR1643346 1 0.3123 0.862 0.844 0.000 0.000 0.156
#> SRR1643347 1 0.3172 0.858 0.840 0.000 0.000 0.160
#> SRR1643348 1 0.3172 0.858 0.840 0.000 0.000 0.160
#> SRR1643349 1 0.3074 0.865 0.848 0.000 0.000 0.152
#> SRR1643350 1 0.3074 0.865 0.848 0.000 0.000 0.152
#> SRR1643351 1 0.3074 0.865 0.848 0.000 0.000 0.152
#> SRR1643352 1 0.3074 0.865 0.848 0.000 0.000 0.152
#> SRR1643353 1 0.3074 0.865 0.848 0.000 0.000 0.152
#> SRR1643354 1 0.3123 0.862 0.844 0.000 0.000 0.156
#> SRR1643355 1 0.3074 0.865 0.848 0.000 0.000 0.152
#> SRR1643356 1 0.3123 0.862 0.844 0.000 0.000 0.156
#> SRR1643357 1 0.3219 0.854 0.836 0.000 0.000 0.164
#> SRR1643358 4 0.1022 0.951 0.032 0.000 0.000 0.968
#> SRR1643359 4 0.1118 0.950 0.036 0.000 0.000 0.964
#> SRR1643360 4 0.1022 0.951 0.032 0.000 0.000 0.968
#> SRR1643361 4 0.1118 0.950 0.036 0.000 0.000 0.964
#> SRR1643362 4 0.1022 0.951 0.032 0.000 0.000 0.968
#> SRR1643363 4 0.1022 0.951 0.032 0.000 0.000 0.968
#> SRR1643364 4 0.1022 0.951 0.032 0.000 0.000 0.968
#> SRR1643365 4 0.1022 0.951 0.032 0.000 0.000 0.968
#> SRR1643366 4 0.1022 0.951 0.032 0.000 0.000 0.968
#> SRR1643367 4 0.1022 0.951 0.032 0.000 0.000 0.968
#> SRR1643368 4 0.1118 0.950 0.036 0.000 0.000 0.964
#> SRR1643369 4 0.1022 0.951 0.032 0.000 0.000 0.968
#> SRR1643370 4 0.1022 0.951 0.032 0.000 0.000 0.968
#> SRR1643371 4 0.1022 0.951 0.032 0.000 0.000 0.968
#> SRR1643372 4 0.1022 0.951 0.032 0.000 0.000 0.968
#> SRR1643373 4 0.0817 0.951 0.024 0.000 0.000 0.976
#> SRR1643374 4 0.0817 0.951 0.024 0.000 0.000 0.976
#> SRR1643375 4 0.0921 0.951 0.028 0.000 0.000 0.972
#> SRR1643376 4 0.0817 0.951 0.024 0.000 0.000 0.976
#> SRR1643377 4 0.0817 0.951 0.024 0.000 0.000 0.976
#> SRR1643378 4 0.0921 0.951 0.028 0.000 0.000 0.972
#> SRR1643379 4 0.0817 0.951 0.024 0.000 0.000 0.976
#> SRR1643380 4 0.0921 0.951 0.028 0.000 0.000 0.972
#> SRR1643381 4 0.0817 0.951 0.024 0.000 0.000 0.976
#> SRR1643382 4 0.0817 0.951 0.024 0.000 0.000 0.976
#> SRR1643383 4 0.0921 0.951 0.028 0.000 0.000 0.972
#> SRR1643384 4 0.0817 0.951 0.024 0.000 0.000 0.976
#> SRR1643385 4 0.0921 0.951 0.028 0.000 0.000 0.972
#> SRR1643386 4 0.0817 0.951 0.024 0.000 0.000 0.976
#> SRR1643387 4 0.0921 0.951 0.028 0.000 0.000 0.972
#> SRR1643388 4 0.0921 0.951 0.028 0.000 0.000 0.972
#> SRR1643389 4 0.0817 0.951 0.024 0.000 0.000 0.976
#> SRR1643390 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643391 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643392 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643393 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643394 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643395 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643396 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643397 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643398 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643399 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643400 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643401 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643402 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643403 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643404 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643405 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643406 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643407 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643408 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643409 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643410 1 0.0188 0.918 0.996 0.000 0.000 0.004
#> SRR1643411 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643412 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643413 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643414 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643415 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643416 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643417 1 0.0188 0.917 0.996 0.000 0.004 0.000
#> SRR1643418 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643419 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643420 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643421 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643422 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643423 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643424 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643425 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643426 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643427 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643428 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643429 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643430 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643431 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643432 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643433 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643434 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643435 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643436 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643437 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643438 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643439 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643440 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643441 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643442 4 0.0336 0.943 0.008 0.000 0.000 0.992
#> SRR1643443 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643444 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643445 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643446 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643447 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643448 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643449 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643450 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643451 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643452 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643453 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643454 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643455 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643456 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643457 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643458 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643459 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643460 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643461 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643462 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643463 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643464 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643466 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643467 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643468 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643469 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643470 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643471 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643472 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643473 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643474 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643475 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643477 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643478 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643479 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643480 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643481 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643482 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643483 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643484 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643485 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643486 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643487 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643488 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643489 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643490 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643491 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643492 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643493 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643494 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643495 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643496 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643497 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643498 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643499 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643500 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643501 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643502 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643503 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643504 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643505 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643506 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643507 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643508 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643509 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643510 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643511 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643512 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643513 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643531 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643532 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643533 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643534 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643535 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643536 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643537 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643538 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643539 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643540 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643541 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643542 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643543 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643544 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643514 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643515 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643516 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643517 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643518 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643519 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643520 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643521 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643522 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643523 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643524 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643525 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643526 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643527 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643528 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643529 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643530 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643545 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643546 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643547 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643548 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643549 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643550 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643551 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643552 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643553 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643554 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643555 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643556 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643558 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643559 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643560 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643561 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643562 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643563 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643564 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643565 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643566 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643567 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643568 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643569 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643570 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643571 2 0.0376 0.996 0.004 0.992 0.000 0.004
#> SRR1643572 2 0.0376 0.996 0.004 0.992 0.000 0.004
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 1 0.4434 0.262 0.536 0.000 0.004 0.000 0.460
#> SRR1643168 1 0.4434 0.262 0.536 0.000 0.004 0.000 0.460
#> SRR1643169 1 0.4434 0.262 0.536 0.000 0.004 0.000 0.460
#> SRR1643170 1 0.4434 0.262 0.536 0.000 0.004 0.000 0.460
#> SRR1643171 1 0.4655 0.228 0.512 0.000 0.012 0.000 0.476
#> SRR1643172 1 0.4744 0.217 0.508 0.000 0.016 0.000 0.476
#> SRR1643173 1 0.4744 0.217 0.508 0.000 0.016 0.000 0.476
#> SRR1643174 1 0.4655 0.228 0.512 0.000 0.012 0.000 0.476
#> SRR1643175 1 0.4607 0.447 0.616 0.000 0.012 0.004 0.368
#> SRR1643176 1 0.4505 0.447 0.620 0.000 0.008 0.004 0.368
#> SRR1643177 1 0.4505 0.447 0.620 0.000 0.008 0.004 0.368
#> SRR1643178 1 0.4505 0.447 0.620 0.000 0.008 0.004 0.368
#> SRR1643180 1 0.4747 0.150 0.496 0.000 0.016 0.000 0.488
#> SRR1643181 1 0.4747 0.150 0.496 0.000 0.016 0.000 0.488
#> SRR1643182 1 0.4747 0.150 0.496 0.000 0.016 0.000 0.488
#> SRR1643183 1 0.4659 0.159 0.496 0.000 0.012 0.000 0.492
#> SRR1643184 1 0.4659 0.159 0.496 0.000 0.012 0.000 0.492
#> SRR1643185 1 0.4659 0.159 0.496 0.000 0.012 0.000 0.492
#> SRR1643186 1 0.4659 0.159 0.496 0.000 0.012 0.000 0.492
#> SRR1643187 1 0.4276 0.423 0.616 0.000 0.000 0.004 0.380
#> SRR1643188 1 0.4276 0.423 0.616 0.000 0.000 0.004 0.380
#> SRR1643189 1 0.4276 0.423 0.616 0.000 0.000 0.004 0.380
#> SRR1643190 1 0.4138 0.426 0.616 0.000 0.000 0.000 0.384
#> SRR1643191 1 0.4803 0.310 0.536 0.000 0.020 0.000 0.444
#> SRR1643192 1 0.4803 0.310 0.536 0.000 0.020 0.000 0.444
#> SRR1643193 1 0.4397 0.321 0.564 0.000 0.000 0.004 0.432
#> SRR1643194 1 0.4397 0.321 0.564 0.000 0.000 0.004 0.432
#> SRR1643195 5 0.6680 0.987 0.348 0.000 0.000 0.240 0.412
#> SRR1643196 5 0.6667 0.987 0.348 0.000 0.000 0.236 0.416
#> SRR1643197 1 0.4425 0.423 0.600 0.000 0.008 0.000 0.392
#> SRR1643198 1 0.4425 0.423 0.600 0.000 0.008 0.000 0.392
#> SRR1643199 1 0.4446 0.230 0.520 0.000 0.004 0.000 0.476
#> SRR1643200 1 0.4448 0.219 0.516 0.000 0.004 0.000 0.480
#> SRR1643201 1 0.4702 0.189 0.512 0.000 0.004 0.008 0.476
#> SRR1643202 1 0.4702 0.189 0.512 0.000 0.004 0.008 0.476
#> SRR1643203 1 0.4161 0.415 0.608 0.000 0.000 0.000 0.392
#> SRR1643204 1 0.4161 0.415 0.608 0.000 0.000 0.000 0.392
#> SRR1643205 3 0.0290 0.990 0.000 0.000 0.992 0.000 0.008
#> SRR1643206 3 0.0290 0.990 0.000 0.000 0.992 0.000 0.008
#> SRR1643207 3 0.0290 0.990 0.000 0.000 0.992 0.000 0.008
#> SRR1643208 3 0.0290 0.990 0.000 0.000 0.992 0.000 0.008
#> SRR1643209 3 0.0290 0.992 0.000 0.000 0.992 0.000 0.008
#> SRR1643210 3 0.0290 0.992 0.000 0.000 0.992 0.000 0.008
#> SRR1643211 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643212 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643213 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643214 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643215 3 0.0794 0.985 0.000 0.000 0.972 0.000 0.028
#> SRR1643216 3 0.0703 0.987 0.000 0.000 0.976 0.000 0.024
#> SRR1643217 3 0.0794 0.985 0.000 0.000 0.972 0.000 0.028
#> SRR1643218 3 0.0794 0.985 0.000 0.000 0.972 0.000 0.028
#> SRR1643219 3 0.0609 0.988 0.000 0.000 0.980 0.000 0.020
#> SRR1643220 3 0.0609 0.988 0.000 0.000 0.980 0.000 0.020
#> SRR1643221 3 0.0162 0.992 0.000 0.000 0.996 0.000 0.004
#> SRR1643222 3 0.0162 0.992 0.000 0.000 0.996 0.000 0.004
#> SRR1643223 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643224 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643225 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643226 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643227 3 0.0510 0.988 0.000 0.000 0.984 0.000 0.016
#> SRR1643228 3 0.0510 0.988 0.000 0.000 0.984 0.000 0.016
#> SRR1643229 3 0.0404 0.989 0.000 0.000 0.988 0.000 0.012
#> SRR1643230 3 0.0290 0.990 0.000 0.000 0.992 0.000 0.008
#> SRR1643231 3 0.0290 0.990 0.000 0.000 0.992 0.000 0.008
#> SRR1643232 3 0.0162 0.992 0.000 0.000 0.996 0.000 0.004
#> SRR1643233 3 0.0404 0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643234 3 0.0404 0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643235 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643236 3 0.0290 0.990 0.000 0.000 0.992 0.000 0.008
#> SRR1643237 3 0.0290 0.990 0.000 0.000 0.992 0.000 0.008
#> SRR1643238 3 0.0404 0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643239 3 0.0404 0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643240 3 0.0404 0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643241 3 0.0404 0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643242 3 0.0404 0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643243 3 0.0404 0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643245 3 0.0404 0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643246 3 0.0404 0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643247 3 0.0404 0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643248 3 0.0404 0.989 0.000 0.000 0.988 0.000 0.012
#> SRR1643249 3 0.1851 0.932 0.000 0.000 0.912 0.000 0.088
#> SRR1643250 4 0.0693 0.919 0.008 0.000 0.000 0.980 0.012
#> SRR1643251 4 0.0807 0.917 0.012 0.000 0.000 0.976 0.012
#> SRR1643252 4 0.0693 0.919 0.008 0.000 0.000 0.980 0.012
#> SRR1643253 4 0.0807 0.917 0.012 0.000 0.000 0.976 0.012
#> SRR1643254 4 0.0912 0.915 0.016 0.000 0.000 0.972 0.012
#> SRR1643255 4 0.0693 0.919 0.008 0.000 0.000 0.980 0.012
#> SRR1643256 4 0.0912 0.915 0.016 0.000 0.000 0.972 0.012
#> SRR1643257 4 0.0807 0.917 0.012 0.000 0.000 0.976 0.012
#> SRR1643258 4 0.0807 0.917 0.012 0.000 0.000 0.976 0.012
#> SRR1643259 4 0.0807 0.917 0.012 0.000 0.000 0.976 0.012
#> SRR1643260 4 0.0807 0.917 0.012 0.000 0.000 0.976 0.012
#> SRR1643261 4 0.0807 0.917 0.012 0.000 0.000 0.976 0.012
#> SRR1643262 4 0.0451 0.922 0.008 0.000 0.000 0.988 0.004
#> SRR1643263 4 0.0451 0.922 0.008 0.000 0.000 0.988 0.004
#> SRR1643264 4 0.0451 0.922 0.008 0.000 0.000 0.988 0.004
#> SRR1643266 4 0.0324 0.922 0.004 0.000 0.000 0.992 0.004
#> SRR1643267 4 0.0451 0.922 0.008 0.000 0.000 0.988 0.004
#> SRR1643268 4 0.0451 0.922 0.008 0.000 0.000 0.988 0.004
#> SRR1643269 4 0.0451 0.922 0.008 0.000 0.000 0.988 0.004
#> SRR1643270 4 0.0451 0.922 0.008 0.000 0.000 0.988 0.004
#> SRR1643271 4 0.0451 0.922 0.008 0.000 0.000 0.988 0.004
#> SRR1643272 4 0.0451 0.922 0.008 0.000 0.000 0.988 0.004
#> SRR1643273 1 0.2110 0.365 0.912 0.000 0.000 0.072 0.016
#> SRR1643274 1 0.2669 0.293 0.876 0.000 0.000 0.104 0.020
#> SRR1643275 1 0.2597 0.321 0.884 0.000 0.000 0.092 0.024
#> SRR1643276 1 0.2915 0.267 0.860 0.000 0.000 0.116 0.024
#> SRR1643277 1 0.2079 0.379 0.916 0.000 0.000 0.064 0.020
#> SRR1643278 1 0.2012 0.387 0.920 0.000 0.000 0.060 0.020
#> SRR1643279 1 0.2144 0.376 0.912 0.000 0.000 0.068 0.020
#> SRR1643280 1 0.2423 0.349 0.896 0.000 0.000 0.080 0.024
#> SRR1643281 1 0.2331 0.353 0.900 0.000 0.000 0.080 0.020
#> SRR1643282 1 0.2079 0.381 0.916 0.000 0.000 0.064 0.020
#> SRR1643283 1 0.2012 0.387 0.920 0.000 0.000 0.060 0.020
#> SRR1643284 1 0.2208 0.369 0.908 0.000 0.000 0.072 0.020
#> SRR1643285 1 0.2795 0.300 0.872 0.000 0.000 0.100 0.028
#> SRR1643286 1 0.2104 0.389 0.916 0.000 0.000 0.060 0.024
#> SRR1643287 4 0.3527 0.754 0.192 0.000 0.000 0.792 0.016
#> SRR1643288 4 0.3527 0.754 0.192 0.000 0.000 0.792 0.016
#> SRR1643289 4 0.3419 0.768 0.180 0.000 0.000 0.804 0.016
#> SRR1643290 4 0.3527 0.754 0.192 0.000 0.000 0.792 0.016
#> SRR1643291 4 0.3492 0.759 0.188 0.000 0.000 0.796 0.016
#> SRR1643292 4 0.3381 0.772 0.176 0.000 0.000 0.808 0.016
#> SRR1643293 4 0.3527 0.754 0.192 0.000 0.000 0.792 0.016
#> SRR1643294 4 0.3527 0.754 0.192 0.000 0.000 0.792 0.016
#> SRR1643295 4 0.3663 0.732 0.208 0.000 0.000 0.776 0.016
#> SRR1643296 4 0.3562 0.749 0.196 0.000 0.000 0.788 0.016
#> SRR1643297 4 0.3527 0.754 0.192 0.000 0.000 0.792 0.016
#> SRR1643298 4 0.3562 0.748 0.196 0.000 0.000 0.788 0.016
#> SRR1643299 4 0.3527 0.754 0.192 0.000 0.000 0.792 0.016
#> SRR1643300 4 0.3492 0.759 0.188 0.000 0.000 0.796 0.016
#> SRR1643301 4 0.2864 0.783 0.136 0.000 0.000 0.852 0.012
#> SRR1643302 4 0.3779 0.641 0.200 0.000 0.000 0.776 0.024
#> SRR1643303 4 0.3724 0.641 0.204 0.000 0.000 0.776 0.020
#> SRR1643304 4 0.3612 0.694 0.172 0.000 0.000 0.800 0.028
#> SRR1643305 4 0.4221 0.528 0.236 0.000 0.000 0.732 0.032
#> SRR1643306 4 0.3690 0.653 0.200 0.000 0.000 0.780 0.020
#> SRR1643307 4 0.2966 0.776 0.136 0.000 0.000 0.848 0.016
#> SRR1643308 4 0.4352 0.500 0.244 0.000 0.000 0.720 0.036
#> SRR1643309 4 0.2825 0.800 0.124 0.000 0.000 0.860 0.016
#> SRR1643310 4 0.3152 0.766 0.136 0.000 0.000 0.840 0.024
#> SRR1643311 4 0.2624 0.808 0.116 0.000 0.000 0.872 0.012
#> SRR1643312 4 0.5122 0.165 0.312 0.000 0.000 0.628 0.060
#> SRR1643313 4 0.3224 0.734 0.160 0.000 0.000 0.824 0.016
#> SRR1643314 1 0.4264 0.433 0.620 0.000 0.000 0.004 0.376
#> SRR1643315 1 0.4264 0.433 0.620 0.000 0.000 0.004 0.376
#> SRR1643316 1 0.4264 0.433 0.620 0.000 0.000 0.004 0.376
#> SRR1643317 1 0.4264 0.433 0.620 0.000 0.000 0.004 0.376
#> SRR1643318 1 0.4402 0.440 0.620 0.000 0.004 0.004 0.372
#> SRR1643319 1 0.4414 0.436 0.616 0.000 0.004 0.004 0.376
#> SRR1643320 1 0.4264 0.433 0.620 0.000 0.000 0.004 0.376
#> SRR1643321 1 0.4251 0.437 0.624 0.000 0.000 0.004 0.372
#> SRR1643322 1 0.4264 0.433 0.620 0.000 0.000 0.004 0.376
#> SRR1643323 1 0.4414 0.436 0.616 0.000 0.004 0.004 0.376
#> SRR1643324 1 0.4264 0.433 0.620 0.000 0.000 0.004 0.376
#> SRR1643325 1 0.4414 0.436 0.616 0.000 0.004 0.004 0.376
#> SRR1643326 1 0.4264 0.433 0.620 0.000 0.000 0.004 0.376
#> SRR1643327 1 0.4264 0.433 0.620 0.000 0.000 0.004 0.376
#> SRR1643328 1 0.4497 0.456 0.632 0.000 0.016 0.000 0.352
#> SRR1643329 1 0.4538 0.449 0.620 0.000 0.016 0.000 0.364
#> SRR1643330 1 0.4525 0.452 0.624 0.000 0.016 0.000 0.360
#> SRR1643331 1 0.4511 0.454 0.628 0.000 0.016 0.000 0.356
#> SRR1643332 1 0.4497 0.456 0.632 0.000 0.016 0.000 0.352
#> SRR1643333 1 0.4525 0.452 0.624 0.000 0.016 0.000 0.360
#> SRR1643334 1 0.4525 0.452 0.624 0.000 0.016 0.000 0.360
#> SRR1643335 1 0.4525 0.452 0.624 0.000 0.016 0.000 0.360
#> SRR1643336 1 0.4497 0.456 0.632 0.000 0.016 0.000 0.352
#> SRR1643337 1 0.4511 0.454 0.628 0.000 0.016 0.000 0.356
#> SRR1643338 1 0.4525 0.452 0.624 0.000 0.016 0.000 0.360
#> SRR1643339 1 0.4511 0.454 0.628 0.000 0.016 0.000 0.356
#> SRR1643340 1 0.4538 0.449 0.620 0.000 0.016 0.000 0.364
#> SRR1643341 1 0.4538 0.449 0.620 0.000 0.016 0.000 0.364
#> SRR1643342 1 0.4525 0.452 0.624 0.000 0.016 0.000 0.360
#> SRR1643343 1 0.2853 0.387 0.884 0.000 0.008 0.040 0.068
#> SRR1643344 1 0.2929 0.380 0.880 0.000 0.008 0.044 0.068
#> SRR1643345 1 0.2775 0.392 0.888 0.000 0.008 0.036 0.068
#> SRR1643346 1 0.2853 0.386 0.884 0.000 0.008 0.040 0.068
#> SRR1643347 1 0.2710 0.394 0.892 0.000 0.008 0.036 0.064
#> SRR1643348 1 0.2989 0.384 0.880 0.000 0.016 0.036 0.068
#> SRR1643349 1 0.2929 0.380 0.880 0.000 0.008 0.044 0.068
#> SRR1643350 1 0.2710 0.394 0.892 0.000 0.008 0.036 0.064
#> SRR1643351 1 0.2629 0.399 0.896 0.000 0.008 0.032 0.064
#> SRR1643352 1 0.2710 0.394 0.892 0.000 0.008 0.036 0.064
#> SRR1643353 1 0.2822 0.391 0.888 0.000 0.012 0.036 0.064
#> SRR1643354 1 0.2965 0.383 0.880 0.000 0.012 0.040 0.068
#> SRR1643355 1 0.2788 0.389 0.888 0.000 0.008 0.040 0.064
#> SRR1643356 1 0.2965 0.382 0.880 0.000 0.012 0.040 0.068
#> SRR1643357 1 0.2989 0.384 0.880 0.000 0.016 0.036 0.068
#> SRR1643358 4 0.0162 0.921 0.000 0.000 0.000 0.996 0.004
#> SRR1643359 4 0.0162 0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643360 4 0.0290 0.922 0.000 0.000 0.000 0.992 0.008
#> SRR1643361 4 0.0162 0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643362 4 0.0162 0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643363 4 0.0162 0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643364 4 0.0290 0.922 0.000 0.000 0.000 0.992 0.008
#> SRR1643365 4 0.0162 0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643366 4 0.0162 0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643367 4 0.0162 0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643368 4 0.0162 0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643369 4 0.0162 0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643370 4 0.0162 0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643371 4 0.0000 0.922 0.000 0.000 0.000 1.000 0.000
#> SRR1643372 4 0.0000 0.922 0.000 0.000 0.000 1.000 0.000
#> SRR1643373 4 0.0566 0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643374 4 0.0566 0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643375 4 0.0566 0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643376 4 0.0566 0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643377 4 0.0566 0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643378 4 0.0566 0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643379 4 0.0566 0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643380 4 0.0566 0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643381 4 0.0566 0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643382 4 0.0566 0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643383 4 0.0566 0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643384 4 0.0566 0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643385 4 0.0566 0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643386 4 0.0566 0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643387 4 0.0566 0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643388 4 0.0566 0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643389 4 0.0566 0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643390 1 0.3318 0.483 0.808 0.000 0.012 0.000 0.180
#> SRR1643391 1 0.3659 0.483 0.768 0.000 0.012 0.000 0.220
#> SRR1643392 1 0.3427 0.485 0.796 0.000 0.012 0.000 0.192
#> SRR1643393 1 0.3353 0.486 0.796 0.000 0.008 0.000 0.196
#> SRR1643394 1 0.3318 0.486 0.800 0.000 0.008 0.000 0.192
#> SRR1643395 1 0.3462 0.486 0.792 0.000 0.012 0.000 0.196
#> SRR1643396 1 0.3318 0.486 0.800 0.000 0.008 0.000 0.192
#> SRR1643397 1 0.3487 0.485 0.780 0.000 0.008 0.000 0.212
#> SRR1643398 1 0.3421 0.486 0.788 0.000 0.008 0.000 0.204
#> SRR1643399 1 0.3582 0.482 0.768 0.000 0.008 0.000 0.224
#> SRR1643400 1 0.3496 0.486 0.788 0.000 0.012 0.000 0.200
#> SRR1643401 1 0.3530 0.485 0.784 0.000 0.012 0.000 0.204
#> SRR1643402 1 0.3318 0.486 0.800 0.000 0.008 0.000 0.192
#> SRR1643403 1 0.3496 0.486 0.788 0.000 0.012 0.000 0.200
#> SRR1643404 1 0.3318 0.486 0.800 0.000 0.008 0.000 0.192
#> SRR1643405 1 0.0807 0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643406 1 0.0807 0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643407 1 0.0807 0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643408 1 0.0807 0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643409 1 0.0807 0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643410 1 0.0807 0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643411 1 0.0807 0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643412 1 0.0807 0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643413 1 0.0807 0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643414 1 0.0807 0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643415 1 0.0807 0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643416 1 0.0807 0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643417 1 0.0807 0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643418 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643419 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643420 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643421 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643422 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643423 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643424 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643425 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643426 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643427 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643428 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643429 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643430 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643431 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643432 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643433 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643434 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643435 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643436 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643437 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643438 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643439 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643440 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643441 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643442 4 0.0404 0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643443 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643444 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643445 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643446 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643447 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643448 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643449 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643450 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643451 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643452 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643453 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643454 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643455 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643456 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643457 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643458 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643459 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643460 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643461 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643462 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643463 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643464 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643466 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643467 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643468 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643469 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643470 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643471 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643472 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643473 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643474 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643475 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643477 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643478 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643479 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643480 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643481 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643482 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643483 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643484 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643485 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643486 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643487 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643488 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643489 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643490 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643491 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643492 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643493 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643494 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643495 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643496 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643497 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643498 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643499 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643500 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643501 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643502 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643503 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643504 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643505 2 0.0290 0.962 0.000 0.992 0.000 0.000 0.008
#> SRR1643506 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643507 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643508 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643509 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643510 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643511 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643512 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643513 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643531 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643532 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643533 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643534 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643535 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643536 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643537 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643538 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643539 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643540 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643541 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643542 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643543 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643544 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643514 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643515 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643516 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643517 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643518 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643519 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643520 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643521 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643522 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643523 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643524 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643525 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643526 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643527 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643528 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643529 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643530 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643545 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643546 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643547 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643548 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643549 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643550 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643551 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643552 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643553 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643554 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643555 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643556 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643558 2 0.0000 0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643559 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643560 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643561 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643562 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643563 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643564 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643565 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643566 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643567 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643568 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643569 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643570 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643571 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643572 2 0.1908 0.955 0.000 0.908 0.000 0.000 0.092
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 1 0.0881 0.785 0.972 0.000 0.008 0.000 0.012 NA
#> SRR1643168 1 0.0881 0.785 0.972 0.000 0.008 0.000 0.012 NA
#> SRR1643169 1 0.0881 0.785 0.972 0.000 0.008 0.000 0.012 NA
#> SRR1643170 1 0.0881 0.785 0.972 0.000 0.008 0.000 0.012 NA
#> SRR1643171 1 0.0508 0.778 0.984 0.000 0.012 0.000 0.000 NA
#> SRR1643172 1 0.0508 0.778 0.984 0.000 0.012 0.000 0.000 NA
#> SRR1643173 1 0.0508 0.778 0.984 0.000 0.012 0.000 0.000 NA
#> SRR1643174 1 0.0508 0.778 0.984 0.000 0.012 0.000 0.000 NA
#> SRR1643175 1 0.3865 0.706 0.784 0.000 0.000 0.008 0.132 NA
#> SRR1643176 1 0.4044 0.693 0.768 0.000 0.000 0.008 0.140 NA
#> SRR1643177 1 0.4092 0.690 0.768 0.000 0.000 0.012 0.140 NA
#> SRR1643178 1 0.4103 0.687 0.768 0.000 0.000 0.012 0.136 NA
#> SRR1643180 1 0.0820 0.771 0.972 0.000 0.016 0.000 0.000 NA
#> SRR1643181 1 0.0914 0.768 0.968 0.000 0.016 0.000 0.000 NA
#> SRR1643182 1 0.0820 0.771 0.972 0.000 0.016 0.000 0.000 NA
#> SRR1643183 1 0.0914 0.768 0.968 0.000 0.016 0.000 0.000 NA
#> SRR1643184 1 0.0914 0.768 0.968 0.000 0.016 0.000 0.000 NA
#> SRR1643185 1 0.0820 0.771 0.972 0.000 0.016 0.000 0.000 NA
#> SRR1643186 1 0.0914 0.771 0.968 0.000 0.016 0.000 0.000 NA
#> SRR1643187 1 0.1967 0.791 0.904 0.000 0.000 0.000 0.084 NA
#> SRR1643188 1 0.1967 0.791 0.904 0.000 0.000 0.000 0.084 NA
#> SRR1643189 1 0.1967 0.791 0.904 0.000 0.000 0.000 0.084 NA
#> SRR1643190 1 0.1967 0.791 0.904 0.000 0.000 0.000 0.084 NA
#> SRR1643191 1 0.0748 0.779 0.976 0.000 0.016 0.000 0.004 NA
#> SRR1643192 1 0.0951 0.782 0.968 0.000 0.020 0.000 0.008 NA
#> SRR1643193 1 0.0951 0.788 0.968 0.000 0.004 0.000 0.020 NA
#> SRR1643194 1 0.0806 0.788 0.972 0.000 0.000 0.000 0.020 NA
#> SRR1643195 1 0.3512 0.530 0.772 0.000 0.000 0.196 0.000 NA
#> SRR1643196 1 0.3512 0.530 0.772 0.000 0.000 0.196 0.000 NA
#> SRR1643197 1 0.1888 0.793 0.916 0.000 0.004 0.000 0.068 NA
#> SRR1643198 1 0.1888 0.793 0.916 0.000 0.004 0.000 0.068 NA
#> SRR1643199 1 0.0881 0.781 0.972 0.000 0.012 0.000 0.008 NA
#> SRR1643200 1 0.0984 0.779 0.968 0.000 0.012 0.000 0.008 NA
#> SRR1643201 1 0.0717 0.780 0.976 0.000 0.000 0.008 0.000 NA
#> SRR1643202 1 0.0806 0.779 0.972 0.000 0.000 0.008 0.000 NA
#> SRR1643203 1 0.1643 0.793 0.924 0.000 0.000 0.000 0.068 NA
#> SRR1643204 1 0.1701 0.793 0.920 0.000 0.000 0.000 0.072 NA
#> SRR1643205 3 0.0458 0.990 0.000 0.000 0.984 0.000 0.000 NA
#> SRR1643206 3 0.0458 0.990 0.000 0.000 0.984 0.000 0.000 NA
#> SRR1643207 3 0.0458 0.990 0.000 0.000 0.984 0.000 0.000 NA
#> SRR1643208 3 0.0458 0.990 0.000 0.000 0.984 0.000 0.000 NA
#> SRR1643209 3 0.0146 0.992 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643210 3 0.0146 0.992 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643211 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643212 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643213 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643214 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643215 3 0.0508 0.988 0.000 0.000 0.984 0.000 0.012 NA
#> SRR1643216 3 0.0508 0.988 0.000 0.000 0.984 0.000 0.012 NA
#> SRR1643217 3 0.0508 0.988 0.000 0.000 0.984 0.000 0.012 NA
#> SRR1643218 3 0.0508 0.988 0.000 0.000 0.984 0.000 0.012 NA
#> SRR1643219 3 0.0508 0.988 0.000 0.000 0.984 0.000 0.012 NA
#> SRR1643220 3 0.0508 0.988 0.000 0.000 0.984 0.000 0.012 NA
#> SRR1643221 3 0.0146 0.992 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643222 3 0.0146 0.992 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643223 3 0.0363 0.991 0.000 0.000 0.988 0.000 0.000 NA
#> SRR1643224 3 0.0363 0.991 0.000 0.000 0.988 0.000 0.000 NA
#> SRR1643225 3 0.0363 0.991 0.000 0.000 0.988 0.000 0.000 NA
#> SRR1643226 3 0.0363 0.991 0.000 0.000 0.988 0.000 0.000 NA
#> SRR1643227 3 0.0692 0.987 0.004 0.000 0.976 0.000 0.000 NA
#> SRR1643228 3 0.0692 0.987 0.004 0.000 0.976 0.000 0.000 NA
#> SRR1643229 3 0.0603 0.989 0.004 0.000 0.980 0.000 0.000 NA
#> SRR1643230 3 0.0458 0.990 0.000 0.000 0.984 0.000 0.000 NA
#> SRR1643231 3 0.0458 0.990 0.000 0.000 0.984 0.000 0.000 NA
#> SRR1643232 3 0.0260 0.992 0.000 0.000 0.992 0.000 0.000 NA
#> SRR1643233 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643234 3 0.0000 0.992 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643235 3 0.0146 0.992 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643236 3 0.0260 0.992 0.000 0.000 0.992 0.000 0.000 NA
#> SRR1643237 3 0.0260 0.992 0.000 0.000 0.992 0.000 0.000 NA
#> SRR1643238 3 0.0260 0.991 0.000 0.000 0.992 0.000 0.008 NA
#> SRR1643239 3 0.0260 0.991 0.000 0.000 0.992 0.000 0.008 NA
#> SRR1643240 3 0.0260 0.991 0.000 0.000 0.992 0.000 0.008 NA
#> SRR1643241 3 0.0260 0.991 0.000 0.000 0.992 0.000 0.008 NA
#> SRR1643242 3 0.0363 0.991 0.000 0.000 0.988 0.000 0.000 NA
#> SRR1643243 3 0.0405 0.990 0.000 0.000 0.988 0.000 0.008 NA
#> SRR1643245 3 0.0291 0.991 0.000 0.000 0.992 0.000 0.004 NA
#> SRR1643246 3 0.0291 0.991 0.000 0.000 0.992 0.000 0.004 NA
#> SRR1643247 3 0.0291 0.991 0.000 0.000 0.992 0.000 0.004 NA
#> SRR1643248 3 0.0806 0.985 0.008 0.000 0.972 0.000 0.000 NA
#> SRR1643249 3 0.1572 0.954 0.036 0.000 0.936 0.000 0.000 NA
#> SRR1643250 4 0.0725 0.889 0.012 0.000 0.000 0.976 0.000 NA
#> SRR1643251 4 0.0891 0.887 0.024 0.000 0.000 0.968 0.000 NA
#> SRR1643252 4 0.0622 0.889 0.012 0.000 0.000 0.980 0.000 NA
#> SRR1643253 4 0.0820 0.888 0.016 0.000 0.000 0.972 0.000 NA
#> SRR1643254 4 0.0972 0.886 0.028 0.000 0.000 0.964 0.000 NA
#> SRR1643255 4 0.0717 0.889 0.008 0.000 0.000 0.976 0.000 NA
#> SRR1643256 4 0.1003 0.887 0.020 0.000 0.000 0.964 0.000 NA
#> SRR1643257 4 0.0717 0.889 0.016 0.000 0.000 0.976 0.000 NA
#> SRR1643258 4 0.0909 0.888 0.020 0.000 0.000 0.968 0.000 NA
#> SRR1643259 4 0.1088 0.886 0.024 0.000 0.000 0.960 0.000 NA
#> SRR1643260 4 0.1168 0.885 0.028 0.000 0.000 0.956 0.000 NA
#> SRR1643261 4 0.0820 0.889 0.012 0.000 0.000 0.972 0.000 NA
#> SRR1643262 4 0.1003 0.891 0.000 0.000 0.000 0.964 0.020 NA
#> SRR1643263 4 0.0909 0.891 0.000 0.000 0.000 0.968 0.020 NA
#> SRR1643264 4 0.0909 0.891 0.000 0.000 0.000 0.968 0.020 NA
#> SRR1643266 4 0.1003 0.891 0.000 0.000 0.000 0.964 0.016 NA
#> SRR1643267 4 0.0909 0.891 0.000 0.000 0.000 0.968 0.020 NA
#> SRR1643268 4 0.1003 0.891 0.000 0.000 0.000 0.964 0.020 NA
#> SRR1643269 4 0.0820 0.891 0.000 0.000 0.000 0.972 0.016 NA
#> SRR1643270 4 0.0820 0.891 0.000 0.000 0.000 0.972 0.016 NA
#> SRR1643271 4 0.0909 0.891 0.000 0.000 0.000 0.968 0.020 NA
#> SRR1643272 4 0.1003 0.891 0.000 0.000 0.000 0.964 0.020 NA
#> SRR1643273 5 0.3079 0.779 0.128 0.000 0.000 0.028 0.836 NA
#> SRR1643274 5 0.3135 0.777 0.124 0.000 0.000 0.028 0.836 NA
#> SRR1643275 5 0.3036 0.778 0.124 0.000 0.000 0.028 0.840 NA
#> SRR1643276 5 0.3258 0.774 0.120 0.000 0.000 0.032 0.832 NA
#> SRR1643277 5 0.2973 0.780 0.136 0.000 0.000 0.024 0.836 NA
#> SRR1643278 5 0.3036 0.779 0.124 0.000 0.000 0.028 0.840 NA
#> SRR1643279 5 0.3214 0.774 0.116 0.000 0.000 0.032 0.836 NA
#> SRR1643280 5 0.3135 0.778 0.124 0.000 0.000 0.028 0.836 NA
#> SRR1643281 5 0.3092 0.778 0.120 0.000 0.000 0.028 0.840 NA
#> SRR1643282 5 0.3344 0.773 0.120 0.000 0.000 0.032 0.828 NA
#> SRR1643283 5 0.3182 0.780 0.136 0.000 0.000 0.024 0.828 NA
#> SRR1643284 5 0.3227 0.776 0.124 0.000 0.000 0.028 0.832 NA
#> SRR1643285 5 0.3068 0.777 0.120 0.000 0.000 0.032 0.840 NA
#> SRR1643286 5 0.3013 0.779 0.140 0.000 0.000 0.024 0.832 NA
#> SRR1643287 4 0.4756 0.415 0.000 0.000 0.000 0.540 0.408 NA
#> SRR1643288 4 0.4728 0.452 0.000 0.000 0.000 0.556 0.392 NA
#> SRR1643289 4 0.4703 0.472 0.000 0.000 0.000 0.568 0.380 NA
#> SRR1643290 4 0.4743 0.432 0.000 0.000 0.000 0.548 0.400 NA
#> SRR1643291 4 0.4720 0.457 0.000 0.000 0.000 0.560 0.388 NA
#> SRR1643292 4 0.4684 0.488 0.000 0.000 0.000 0.576 0.372 NA
#> SRR1643293 4 0.4736 0.440 0.000 0.000 0.000 0.552 0.396 NA
#> SRR1643294 4 0.4697 0.429 0.000 0.000 0.000 0.548 0.404 NA
#> SRR1643295 4 0.4739 0.357 0.000 0.000 0.000 0.516 0.436 NA
#> SRR1643296 4 0.4756 0.415 0.000 0.000 0.000 0.540 0.408 NA
#> SRR1643297 4 0.4728 0.450 0.000 0.000 0.000 0.556 0.392 NA
#> SRR1643298 4 0.4763 0.405 0.000 0.000 0.000 0.536 0.412 NA
#> SRR1643299 4 0.4768 0.395 0.000 0.000 0.000 0.532 0.416 NA
#> SRR1643300 4 0.4703 0.472 0.000 0.000 0.000 0.568 0.380 NA
#> SRR1643301 4 0.2765 0.835 0.064 0.000 0.000 0.872 0.056 NA
#> SRR1643302 4 0.3558 0.783 0.108 0.000 0.000 0.812 0.072 NA
#> SRR1643303 4 0.3675 0.776 0.096 0.000 0.000 0.804 0.092 NA
#> SRR1643304 4 0.3620 0.782 0.120 0.000 0.000 0.808 0.060 NA
#> SRR1643305 4 0.3851 0.736 0.160 0.000 0.000 0.776 0.056 NA
#> SRR1643306 4 0.3344 0.798 0.104 0.000 0.000 0.828 0.060 NA
#> SRR1643307 4 0.2884 0.828 0.064 0.000 0.000 0.864 0.064 NA
#> SRR1643308 4 0.3909 0.726 0.160 0.000 0.000 0.772 0.060 NA
#> SRR1643309 4 0.3038 0.823 0.060 0.000 0.000 0.856 0.072 NA
#> SRR1643310 4 0.3151 0.822 0.076 0.000 0.000 0.848 0.064 NA
#> SRR1643311 4 0.2614 0.845 0.060 0.000 0.000 0.884 0.044 NA
#> SRR1643312 4 0.5091 0.546 0.224 0.000 0.000 0.652 0.112 NA
#> SRR1643313 4 0.2933 0.828 0.076 0.000 0.000 0.860 0.056 NA
#> SRR1643314 1 0.3702 0.732 0.760 0.000 0.008 0.000 0.208 NA
#> SRR1643315 1 0.3777 0.730 0.756 0.000 0.008 0.000 0.208 NA
#> SRR1643316 1 0.3296 0.756 0.796 0.000 0.004 0.000 0.180 NA
#> SRR1643317 1 0.3688 0.741 0.768 0.000 0.008 0.000 0.196 NA
#> SRR1643318 1 0.3652 0.730 0.760 0.000 0.008 0.000 0.212 NA
#> SRR1643319 1 0.3229 0.761 0.804 0.000 0.004 0.000 0.172 NA
#> SRR1643320 1 0.3361 0.751 0.788 0.000 0.004 0.000 0.188 NA
#> SRR1643321 1 0.3623 0.733 0.764 0.000 0.008 0.000 0.208 NA
#> SRR1643322 1 0.3502 0.747 0.780 0.000 0.008 0.000 0.192 NA
#> SRR1643323 1 0.3550 0.750 0.780 0.000 0.008 0.000 0.188 NA
#> SRR1643324 1 0.3393 0.749 0.784 0.000 0.004 0.000 0.192 NA
#> SRR1643325 1 0.3438 0.753 0.788 0.000 0.008 0.000 0.184 NA
#> SRR1643326 1 0.3777 0.730 0.756 0.000 0.008 0.000 0.208 NA
#> SRR1643327 1 0.3361 0.752 0.788 0.000 0.004 0.000 0.188 NA
#> SRR1643328 1 0.4063 0.635 0.692 0.000 0.008 0.000 0.280 NA
#> SRR1643329 1 0.3989 0.679 0.716 0.000 0.008 0.000 0.252 NA
#> SRR1643330 1 0.4056 0.661 0.704 0.000 0.008 0.000 0.264 NA
#> SRR1643331 1 0.4099 0.647 0.696 0.000 0.008 0.000 0.272 NA
#> SRR1643332 1 0.4043 0.642 0.696 0.000 0.008 0.000 0.276 NA
#> SRR1643333 1 0.4001 0.657 0.704 0.000 0.008 0.000 0.268 NA
#> SRR1643334 1 0.3897 0.667 0.712 0.000 0.008 0.000 0.264 NA
#> SRR1643335 1 0.4022 0.650 0.700 0.000 0.008 0.000 0.272 NA
#> SRR1643336 1 0.4043 0.642 0.696 0.000 0.008 0.000 0.276 NA
#> SRR1643337 1 0.4043 0.643 0.696 0.000 0.008 0.000 0.276 NA
#> SRR1643338 1 0.4001 0.657 0.704 0.000 0.008 0.000 0.268 NA
#> SRR1643339 1 0.4063 0.634 0.692 0.000 0.008 0.000 0.280 NA
#> SRR1643340 1 0.4001 0.657 0.704 0.000 0.008 0.000 0.268 NA
#> SRR1643341 1 0.4056 0.661 0.704 0.000 0.008 0.000 0.264 NA
#> SRR1643342 1 0.4001 0.657 0.704 0.000 0.008 0.000 0.268 NA
#> SRR1643343 5 0.3764 0.753 0.108 0.000 0.000 0.008 0.796 NA
#> SRR1643344 5 0.3742 0.754 0.116 0.000 0.000 0.004 0.792 NA
#> SRR1643345 5 0.3560 0.755 0.104 0.000 0.000 0.004 0.808 NA
#> SRR1643346 5 0.3649 0.756 0.112 0.000 0.000 0.004 0.800 NA
#> SRR1643347 5 0.3693 0.756 0.116 0.000 0.000 0.004 0.796 NA
#> SRR1643348 5 0.3808 0.752 0.112 0.000 0.000 0.008 0.792 NA
#> SRR1643349 5 0.3669 0.754 0.104 0.000 0.000 0.008 0.804 NA
#> SRR1643350 5 0.3742 0.753 0.116 0.000 0.000 0.004 0.792 NA
#> SRR1643351 5 0.3598 0.759 0.112 0.000 0.000 0.004 0.804 NA
#> SRR1643352 5 0.3699 0.755 0.112 0.000 0.000 0.004 0.796 NA
#> SRR1643353 5 0.3791 0.751 0.116 0.000 0.000 0.004 0.788 NA
#> SRR1643354 5 0.3508 0.756 0.104 0.000 0.000 0.004 0.812 NA
#> SRR1643355 5 0.3785 0.751 0.120 0.000 0.000 0.004 0.788 NA
#> SRR1643356 5 0.3808 0.752 0.112 0.000 0.000 0.008 0.792 NA
#> SRR1643357 5 0.3610 0.753 0.104 0.000 0.000 0.004 0.804 NA
#> SRR1643358 4 0.1524 0.884 0.000 0.000 0.000 0.932 0.008 NA
#> SRR1643359 4 0.1524 0.884 0.000 0.000 0.000 0.932 0.008 NA
#> SRR1643360 4 0.1524 0.884 0.000 0.000 0.000 0.932 0.008 NA
#> SRR1643361 4 0.1686 0.883 0.000 0.000 0.000 0.924 0.012 NA
#> SRR1643362 4 0.1686 0.883 0.000 0.000 0.000 0.924 0.012 NA
#> SRR1643363 4 0.1524 0.884 0.000 0.000 0.000 0.932 0.008 NA
#> SRR1643364 4 0.1895 0.882 0.000 0.000 0.000 0.912 0.016 NA
#> SRR1643365 4 0.1745 0.882 0.000 0.000 0.000 0.920 0.012 NA
#> SRR1643366 4 0.1524 0.884 0.000 0.000 0.000 0.932 0.008 NA
#> SRR1643367 4 0.1524 0.884 0.000 0.000 0.000 0.932 0.008 NA
#> SRR1643368 4 0.1719 0.884 0.000 0.000 0.000 0.924 0.016 NA
#> SRR1643369 4 0.1524 0.884 0.000 0.000 0.000 0.932 0.008 NA
#> SRR1643370 4 0.1524 0.884 0.000 0.000 0.000 0.932 0.008 NA
#> SRR1643371 4 0.1625 0.884 0.000 0.000 0.000 0.928 0.012 NA
#> SRR1643372 4 0.1524 0.884 0.000 0.000 0.000 0.932 0.008 NA
#> SRR1643373 4 0.2122 0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643374 4 0.2066 0.879 0.000 0.000 0.000 0.904 0.024 NA
#> SRR1643375 4 0.2122 0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643376 4 0.2066 0.879 0.000 0.000 0.000 0.904 0.024 NA
#> SRR1643377 4 0.2122 0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643378 4 0.2201 0.877 0.000 0.000 0.000 0.896 0.028 NA
#> SRR1643379 4 0.2066 0.879 0.000 0.000 0.000 0.904 0.024 NA
#> SRR1643380 4 0.2122 0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643381 4 0.2122 0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643382 4 0.2122 0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643383 4 0.2122 0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643384 4 0.2122 0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643385 4 0.2066 0.879 0.000 0.000 0.000 0.904 0.024 NA
#> SRR1643386 4 0.1895 0.880 0.000 0.000 0.000 0.912 0.016 NA
#> SRR1643387 4 0.2122 0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643388 4 0.2122 0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643389 4 0.2066 0.879 0.000 0.000 0.000 0.904 0.024 NA
#> SRR1643390 5 0.4192 0.470 0.412 0.000 0.000 0.000 0.572 NA
#> SRR1643391 5 0.4264 0.237 0.484 0.000 0.000 0.000 0.500 NA
#> SRR1643392 5 0.4199 0.462 0.416 0.000 0.000 0.000 0.568 NA
#> SRR1643393 5 0.4238 0.389 0.444 0.000 0.000 0.000 0.540 NA
#> SRR1643394 5 0.4234 0.399 0.440 0.000 0.000 0.000 0.544 NA
#> SRR1643395 5 0.4212 0.442 0.424 0.000 0.000 0.000 0.560 NA
#> SRR1643396 5 0.4238 0.388 0.444 0.000 0.000 0.000 0.540 NA
#> SRR1643397 5 0.4256 0.321 0.464 0.000 0.000 0.000 0.520 NA
#> SRR1643398 5 0.4256 0.322 0.464 0.000 0.000 0.000 0.520 NA
#> SRR1643399 5 0.4337 0.243 0.480 0.000 0.000 0.000 0.500 NA
#> SRR1643400 5 0.4253 0.335 0.460 0.000 0.000 0.000 0.524 NA
#> SRR1643401 5 0.4224 0.423 0.432 0.000 0.000 0.000 0.552 NA
#> SRR1643402 5 0.4242 0.373 0.448 0.000 0.000 0.000 0.536 NA
#> SRR1643403 5 0.4322 0.349 0.452 0.000 0.000 0.000 0.528 NA
#> SRR1643404 5 0.4218 0.434 0.428 0.000 0.000 0.000 0.556 NA
#> SRR1643405 5 0.3398 0.756 0.216 0.000 0.004 0.000 0.768 NA
#> SRR1643406 5 0.3398 0.756 0.216 0.000 0.004 0.000 0.768 NA
#> SRR1643407 5 0.3370 0.758 0.212 0.000 0.004 0.000 0.772 NA
#> SRR1643408 5 0.3370 0.758 0.212 0.000 0.004 0.000 0.772 NA
#> SRR1643409 5 0.3370 0.758 0.212 0.000 0.004 0.000 0.772 NA
#> SRR1643410 5 0.3341 0.760 0.208 0.000 0.004 0.000 0.776 NA
#> SRR1643411 5 0.3370 0.758 0.212 0.000 0.004 0.000 0.772 NA
#> SRR1643412 5 0.3341 0.759 0.208 0.000 0.004 0.000 0.776 NA
#> SRR1643413 5 0.3398 0.756 0.216 0.000 0.004 0.000 0.768 NA
#> SRR1643414 5 0.3398 0.756 0.216 0.000 0.004 0.000 0.768 NA
#> SRR1643415 5 0.3341 0.759 0.208 0.000 0.004 0.000 0.776 NA
#> SRR1643416 5 0.3426 0.751 0.220 0.000 0.004 0.000 0.764 NA
#> SRR1643417 5 0.3370 0.758 0.212 0.000 0.004 0.000 0.772 NA
#> SRR1643418 4 0.0713 0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643419 4 0.0713 0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643420 4 0.0713 0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643421 4 0.0713 0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643422 4 0.0713 0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643423 4 0.0713 0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643424 4 0.0713 0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643425 4 0.0713 0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643426 4 0.0713 0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643427 4 0.0713 0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643428 4 0.0713 0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643429 4 0.0713 0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643430 4 0.0547 0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643431 4 0.0547 0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643432 4 0.0547 0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643433 4 0.0632 0.889 0.000 0.000 0.000 0.976 0.000 NA
#> SRR1643434 4 0.0547 0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643435 4 0.0547 0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643436 4 0.0547 0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643437 4 0.0547 0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643438 4 0.0547 0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643439 4 0.0547 0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643440 4 0.0547 0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643441 4 0.0547 0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643442 4 0.0547 0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643443 2 0.2664 0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643444 2 0.2664 0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643445 2 0.2664 0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643446 2 0.2664 0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643447 2 0.2664 0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643448 2 0.2664 0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643449 2 0.2664 0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643450 2 0.2664 0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643451 2 0.2664 0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643452 2 0.2664 0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643453 2 0.2664 0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643454 2 0.2664 0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643455 2 0.2664 0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643456 2 0.0000 0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643457 2 0.0000 0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643458 2 0.0000 0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643459 2 0.0000 0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643460 2 0.0000 0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643461 2 0.0000 0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643462 2 0.0000 0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643463 2 0.0000 0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643464 2 0.0000 0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643466 2 0.0000 0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643467 2 0.0000 0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643468 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643469 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643470 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643471 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643472 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643473 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643474 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643475 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643477 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643478 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643479 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643480 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643481 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643482 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643483 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643484 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643485 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643486 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643487 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643488 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643489 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643490 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643491 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643492 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643493 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643494 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643495 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643496 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643497 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643498 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643499 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643500 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643501 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643502 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643503 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643504 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643505 2 0.0260 0.917 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643506 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643507 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643508 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643509 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643510 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643511 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643512 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643513 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643531 2 0.2762 0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643532 2 0.2762 0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643533 2 0.2762 0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643534 2 0.2762 0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643535 2 0.2762 0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643536 2 0.2762 0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643537 2 0.2762 0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643538 2 0.2762 0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643539 2 0.2762 0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643540 2 0.2762 0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643541 2 0.2762 0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643542 2 0.2762 0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643543 2 0.2762 0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643544 2 0.2762 0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643514 2 0.2793 0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643515 2 0.2793 0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643516 2 0.2793 0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643517 2 0.2793 0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643518 2 0.2793 0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643519 2 0.2793 0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643520 2 0.2793 0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643521 2 0.2793 0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643522 2 0.2793 0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643523 2 0.2793 0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643524 2 0.2793 0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643525 2 0.2793 0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643526 2 0.2793 0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643527 2 0.2793 0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643528 2 0.2793 0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643529 2 0.2793 0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643530 2 0.2762 0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643545 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643546 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643547 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643548 2 0.0000 0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643549 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643550 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643551 2 0.0000 0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643552 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643553 2 0.0146 0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643554 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643555 2 0.0000 0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643556 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643558 2 0.0260 0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643559 2 0.2697 0.900 0.000 0.812 0.000 0.000 0.000 NA
#> SRR1643560 2 0.2697 0.900 0.000 0.812 0.000 0.000 0.000 NA
#> SRR1643561 2 0.2730 0.899 0.000 0.808 0.000 0.000 0.000 NA
#> SRR1643562 2 0.2697 0.900 0.000 0.812 0.000 0.000 0.000 NA
#> SRR1643563 2 0.2730 0.899 0.000 0.808 0.000 0.000 0.000 NA
#> SRR1643564 2 0.2730 0.899 0.000 0.808 0.000 0.000 0.000 NA
#> SRR1643565 2 0.2730 0.899 0.000 0.808 0.000 0.000 0.000 NA
#> SRR1643566 2 0.2697 0.900 0.000 0.812 0.000 0.000 0.000 NA
#> SRR1643567 2 0.2730 0.899 0.000 0.808 0.000 0.000 0.000 NA
#> SRR1643568 2 0.2730 0.899 0.000 0.808 0.000 0.000 0.000 NA
#> SRR1643569 2 0.2730 0.899 0.000 0.808 0.000 0.000 0.000 NA
#> SRR1643570 2 0.2697 0.900 0.000 0.812 0.000 0.000 0.000 NA
#> SRR1643571 2 0.2697 0.900 0.000 0.812 0.000 0.000 0.000 NA
#> SRR1643572 2 0.2730 0.899 0.000 0.808 0.000 0.000 0.000 NA
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["ATC", "hclust"]
# you can also extract it by
# res = res_list["ATC:hclust"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'ATC' method.
#> Subgroups are detected by 'hclust' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 2.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.43504 0.566 0.566
#> 3 3 0.874 0.820 0.948 0.14149 0.990 0.982
#> 4 4 0.882 0.998 0.973 0.07360 0.882 0.788
#> 5 5 1.000 0.998 1.000 0.05844 0.998 0.996
#> 6 6 1.000 0.996 0.999 0.00888 0.995 0.989
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 2
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.00 0.86375 1.000 0 0.000
#> SRR1643168 1 0.00 0.86375 1.000 0 0.000
#> SRR1643169 1 0.00 0.86375 1.000 0 0.000
#> SRR1643170 1 0.00 0.86375 1.000 0 0.000
#> SRR1643171 1 0.00 0.86375 1.000 0 0.000
#> SRR1643172 1 0.00 0.86375 1.000 0 0.000
#> SRR1643173 1 0.00 0.86375 1.000 0 0.000
#> SRR1643174 1 0.00 0.86375 1.000 0 0.000
#> SRR1643175 1 0.00 0.86375 1.000 0 0.000
#> SRR1643176 1 0.00 0.86375 1.000 0 0.000
#> SRR1643177 1 0.00 0.86375 1.000 0 0.000
#> SRR1643178 1 0.00 0.86375 1.000 0 0.000
#> SRR1643180 1 0.00 0.86375 1.000 0 0.000
#> SRR1643181 1 0.00 0.86375 1.000 0 0.000
#> SRR1643182 1 0.00 0.86375 1.000 0 0.000
#> SRR1643183 1 0.00 0.86375 1.000 0 0.000
#> SRR1643184 1 0.00 0.86375 1.000 0 0.000
#> SRR1643185 1 0.00 0.86375 1.000 0 0.000
#> SRR1643186 1 0.00 0.86375 1.000 0 0.000
#> SRR1643187 1 0.00 0.86375 1.000 0 0.000
#> SRR1643188 1 0.00 0.86375 1.000 0 0.000
#> SRR1643189 1 0.00 0.86375 1.000 0 0.000
#> SRR1643190 1 0.00 0.86375 1.000 0 0.000
#> SRR1643191 1 0.00 0.86375 1.000 0 0.000
#> SRR1643192 1 0.00 0.86375 1.000 0 0.000
#> SRR1643193 1 0.00 0.86375 1.000 0 0.000
#> SRR1643194 1 0.00 0.86375 1.000 0 0.000
#> SRR1643195 1 0.00 0.86375 1.000 0 0.000
#> SRR1643196 1 0.00 0.86375 1.000 0 0.000
#> SRR1643197 1 0.00 0.86375 1.000 0 0.000
#> SRR1643198 1 0.00 0.86375 1.000 0 0.000
#> SRR1643199 1 0.00 0.86375 1.000 0 0.000
#> SRR1643200 1 0.00 0.86375 1.000 0 0.000
#> SRR1643201 1 0.00 0.86375 1.000 0 0.000
#> SRR1643202 1 0.00 0.86375 1.000 0 0.000
#> SRR1643203 1 0.00 0.86375 1.000 0 0.000
#> SRR1643204 1 0.00 0.86375 1.000 0 0.000
#> SRR1643205 1 0.63 0.00719 0.528 0 0.472
#> SRR1643206 1 0.63 0.00719 0.528 0 0.472
#> SRR1643207 1 0.63 0.00719 0.528 0 0.472
#> SRR1643208 1 0.63 0.00719 0.528 0 0.472
#> SRR1643209 1 0.63 0.00719 0.528 0 0.472
#> SRR1643210 1 0.63 0.00719 0.528 0 0.472
#> SRR1643211 1 0.63 0.00719 0.528 0 0.472
#> SRR1643212 1 0.63 0.00719 0.528 0 0.472
#> SRR1643213 1 0.63 0.00719 0.528 0 0.472
#> SRR1643214 1 0.63 0.00719 0.528 0 0.472
#> SRR1643215 1 0.63 0.00719 0.528 0 0.472
#> SRR1643216 1 0.63 0.00719 0.528 0 0.472
#> SRR1643217 1 0.63 0.00719 0.528 0 0.472
#> SRR1643218 1 0.63 0.00719 0.528 0 0.472
#> SRR1643219 1 0.63 0.00719 0.528 0 0.472
#> SRR1643220 1 0.63 0.00719 0.528 0 0.472
#> SRR1643221 1 0.63 0.00719 0.528 0 0.472
#> SRR1643222 1 0.63 0.00719 0.528 0 0.472
#> SRR1643223 1 0.63 0.00719 0.528 0 0.472
#> SRR1643224 1 0.63 0.00719 0.528 0 0.472
#> SRR1643225 1 0.63 0.00719 0.528 0 0.472
#> SRR1643226 1 0.63 0.00719 0.528 0 0.472
#> SRR1643227 1 0.63 0.00719 0.528 0 0.472
#> SRR1643228 1 0.63 0.00719 0.528 0 0.472
#> SRR1643229 1 0.63 0.00719 0.528 0 0.472
#> SRR1643230 1 0.63 0.00719 0.528 0 0.472
#> SRR1643231 3 0.63 1.00000 0.472 0 0.528
#> SRR1643232 1 0.63 0.00719 0.528 0 0.472
#> SRR1643233 1 0.63 0.00719 0.528 0 0.472
#> SRR1643234 1 0.63 0.00719 0.528 0 0.472
#> SRR1643235 1 0.63 0.00719 0.528 0 0.472
#> SRR1643236 1 0.63 0.00719 0.528 0 0.472
#> SRR1643237 1 0.63 0.00719 0.528 0 0.472
#> SRR1643238 1 0.63 0.00719 0.528 0 0.472
#> SRR1643239 1 0.63 0.00719 0.528 0 0.472
#> SRR1643240 1 0.63 0.00719 0.528 0 0.472
#> SRR1643241 1 0.63 0.00719 0.528 0 0.472
#> SRR1643242 3 0.63 1.00000 0.472 0 0.528
#> SRR1643243 1 0.63 0.00719 0.528 0 0.472
#> SRR1643245 1 0.63 0.00719 0.528 0 0.472
#> SRR1643246 1 0.63 0.00719 0.528 0 0.472
#> SRR1643247 1 0.63 0.00719 0.528 0 0.472
#> SRR1643248 1 0.63 0.00719 0.528 0 0.472
#> SRR1643249 3 0.63 1.00000 0.472 0 0.528
#> SRR1643250 1 0.00 0.86375 1.000 0 0.000
#> SRR1643251 1 0.00 0.86375 1.000 0 0.000
#> SRR1643252 1 0.00 0.86375 1.000 0 0.000
#> SRR1643253 1 0.00 0.86375 1.000 0 0.000
#> SRR1643254 1 0.00 0.86375 1.000 0 0.000
#> SRR1643255 1 0.00 0.86375 1.000 0 0.000
#> SRR1643256 1 0.00 0.86375 1.000 0 0.000
#> SRR1643257 1 0.00 0.86375 1.000 0 0.000
#> SRR1643258 1 0.00 0.86375 1.000 0 0.000
#> SRR1643259 1 0.00 0.86375 1.000 0 0.000
#> SRR1643260 1 0.00 0.86375 1.000 0 0.000
#> SRR1643261 1 0.00 0.86375 1.000 0 0.000
#> SRR1643262 1 0.00 0.86375 1.000 0 0.000
#> SRR1643263 1 0.00 0.86375 1.000 0 0.000
#> SRR1643264 1 0.00 0.86375 1.000 0 0.000
#> SRR1643266 1 0.00 0.86375 1.000 0 0.000
#> SRR1643267 1 0.00 0.86375 1.000 0 0.000
#> SRR1643268 1 0.00 0.86375 1.000 0 0.000
#> SRR1643269 1 0.00 0.86375 1.000 0 0.000
#> SRR1643270 1 0.00 0.86375 1.000 0 0.000
#> SRR1643271 1 0.00 0.86375 1.000 0 0.000
#> SRR1643272 1 0.00 0.86375 1.000 0 0.000
#> SRR1643273 1 0.00 0.86375 1.000 0 0.000
#> SRR1643274 1 0.00 0.86375 1.000 0 0.000
#> SRR1643275 1 0.00 0.86375 1.000 0 0.000
#> SRR1643276 1 0.00 0.86375 1.000 0 0.000
#> SRR1643277 1 0.00 0.86375 1.000 0 0.000
#> SRR1643278 1 0.00 0.86375 1.000 0 0.000
#> SRR1643279 1 0.00 0.86375 1.000 0 0.000
#> SRR1643280 1 0.00 0.86375 1.000 0 0.000
#> SRR1643281 1 0.00 0.86375 1.000 0 0.000
#> SRR1643282 1 0.00 0.86375 1.000 0 0.000
#> SRR1643283 1 0.00 0.86375 1.000 0 0.000
#> SRR1643284 1 0.00 0.86375 1.000 0 0.000
#> SRR1643285 1 0.00 0.86375 1.000 0 0.000
#> SRR1643286 1 0.00 0.86375 1.000 0 0.000
#> SRR1643287 1 0.00 0.86375 1.000 0 0.000
#> SRR1643288 1 0.00 0.86375 1.000 0 0.000
#> SRR1643289 1 0.00 0.86375 1.000 0 0.000
#> SRR1643290 1 0.00 0.86375 1.000 0 0.000
#> SRR1643291 1 0.00 0.86375 1.000 0 0.000
#> SRR1643292 1 0.00 0.86375 1.000 0 0.000
#> SRR1643293 1 0.00 0.86375 1.000 0 0.000
#> SRR1643294 1 0.00 0.86375 1.000 0 0.000
#> SRR1643295 1 0.00 0.86375 1.000 0 0.000
#> SRR1643296 1 0.00 0.86375 1.000 0 0.000
#> SRR1643297 1 0.00 0.86375 1.000 0 0.000
#> SRR1643298 1 0.00 0.86375 1.000 0 0.000
#> SRR1643299 1 0.00 0.86375 1.000 0 0.000
#> SRR1643300 1 0.00 0.86375 1.000 0 0.000
#> SRR1643301 1 0.00 0.86375 1.000 0 0.000
#> SRR1643302 1 0.00 0.86375 1.000 0 0.000
#> SRR1643303 1 0.00 0.86375 1.000 0 0.000
#> SRR1643304 1 0.00 0.86375 1.000 0 0.000
#> SRR1643305 1 0.00 0.86375 1.000 0 0.000
#> SRR1643306 1 0.00 0.86375 1.000 0 0.000
#> SRR1643307 1 0.00 0.86375 1.000 0 0.000
#> SRR1643308 1 0.00 0.86375 1.000 0 0.000
#> SRR1643309 1 0.00 0.86375 1.000 0 0.000
#> SRR1643310 1 0.00 0.86375 1.000 0 0.000
#> SRR1643311 1 0.00 0.86375 1.000 0 0.000
#> SRR1643312 1 0.00 0.86375 1.000 0 0.000
#> SRR1643313 1 0.00 0.86375 1.000 0 0.000
#> SRR1643314 1 0.00 0.86375 1.000 0 0.000
#> SRR1643315 1 0.00 0.86375 1.000 0 0.000
#> SRR1643316 1 0.00 0.86375 1.000 0 0.000
#> SRR1643317 1 0.00 0.86375 1.000 0 0.000
#> SRR1643318 1 0.00 0.86375 1.000 0 0.000
#> SRR1643319 1 0.00 0.86375 1.000 0 0.000
#> SRR1643320 1 0.00 0.86375 1.000 0 0.000
#> SRR1643321 1 0.00 0.86375 1.000 0 0.000
#> SRR1643322 1 0.00 0.86375 1.000 0 0.000
#> SRR1643323 1 0.00 0.86375 1.000 0 0.000
#> SRR1643324 1 0.00 0.86375 1.000 0 0.000
#> SRR1643325 1 0.00 0.86375 1.000 0 0.000
#> SRR1643326 1 0.00 0.86375 1.000 0 0.000
#> SRR1643327 1 0.00 0.86375 1.000 0 0.000
#> SRR1643328 1 0.00 0.86375 1.000 0 0.000
#> SRR1643329 1 0.00 0.86375 1.000 0 0.000
#> SRR1643330 1 0.00 0.86375 1.000 0 0.000
#> SRR1643331 1 0.00 0.86375 1.000 0 0.000
#> SRR1643332 1 0.00 0.86375 1.000 0 0.000
#> SRR1643333 1 0.00 0.86375 1.000 0 0.000
#> SRR1643334 1 0.00 0.86375 1.000 0 0.000
#> SRR1643335 1 0.00 0.86375 1.000 0 0.000
#> SRR1643336 1 0.00 0.86375 1.000 0 0.000
#> SRR1643337 1 0.00 0.86375 1.000 0 0.000
#> SRR1643338 1 0.00 0.86375 1.000 0 0.000
#> SRR1643339 1 0.00 0.86375 1.000 0 0.000
#> SRR1643340 1 0.00 0.86375 1.000 0 0.000
#> SRR1643341 1 0.00 0.86375 1.000 0 0.000
#> SRR1643342 1 0.00 0.86375 1.000 0 0.000
#> SRR1643343 1 0.00 0.86375 1.000 0 0.000
#> SRR1643344 1 0.00 0.86375 1.000 0 0.000
#> SRR1643345 1 0.00 0.86375 1.000 0 0.000
#> SRR1643346 1 0.00 0.86375 1.000 0 0.000
#> SRR1643347 1 0.00 0.86375 1.000 0 0.000
#> SRR1643348 1 0.00 0.86375 1.000 0 0.000
#> SRR1643349 1 0.00 0.86375 1.000 0 0.000
#> SRR1643350 1 0.00 0.86375 1.000 0 0.000
#> SRR1643351 1 0.00 0.86375 1.000 0 0.000
#> SRR1643352 1 0.00 0.86375 1.000 0 0.000
#> SRR1643353 1 0.00 0.86375 1.000 0 0.000
#> SRR1643354 1 0.00 0.86375 1.000 0 0.000
#> SRR1643355 1 0.00 0.86375 1.000 0 0.000
#> SRR1643356 1 0.00 0.86375 1.000 0 0.000
#> SRR1643357 1 0.00 0.86375 1.000 0 0.000
#> SRR1643358 1 0.00 0.86375 1.000 0 0.000
#> SRR1643359 1 0.00 0.86375 1.000 0 0.000
#> SRR1643360 1 0.00 0.86375 1.000 0 0.000
#> SRR1643361 1 0.00 0.86375 1.000 0 0.000
#> SRR1643362 1 0.00 0.86375 1.000 0 0.000
#> SRR1643363 1 0.00 0.86375 1.000 0 0.000
#> SRR1643364 1 0.00 0.86375 1.000 0 0.000
#> SRR1643365 1 0.00 0.86375 1.000 0 0.000
#> SRR1643366 1 0.00 0.86375 1.000 0 0.000
#> SRR1643367 1 0.00 0.86375 1.000 0 0.000
#> SRR1643368 1 0.00 0.86375 1.000 0 0.000
#> SRR1643369 1 0.00 0.86375 1.000 0 0.000
#> SRR1643370 1 0.00 0.86375 1.000 0 0.000
#> SRR1643371 1 0.00 0.86375 1.000 0 0.000
#> SRR1643372 1 0.00 0.86375 1.000 0 0.000
#> SRR1643373 1 0.00 0.86375 1.000 0 0.000
#> SRR1643374 1 0.00 0.86375 1.000 0 0.000
#> SRR1643375 1 0.00 0.86375 1.000 0 0.000
#> SRR1643376 1 0.00 0.86375 1.000 0 0.000
#> SRR1643377 1 0.00 0.86375 1.000 0 0.000
#> SRR1643378 1 0.00 0.86375 1.000 0 0.000
#> SRR1643379 1 0.00 0.86375 1.000 0 0.000
#> SRR1643380 1 0.00 0.86375 1.000 0 0.000
#> SRR1643381 1 0.00 0.86375 1.000 0 0.000
#> SRR1643382 1 0.00 0.86375 1.000 0 0.000
#> SRR1643383 1 0.00 0.86375 1.000 0 0.000
#> SRR1643384 1 0.00 0.86375 1.000 0 0.000
#> SRR1643385 1 0.00 0.86375 1.000 0 0.000
#> SRR1643386 1 0.00 0.86375 1.000 0 0.000
#> SRR1643387 1 0.00 0.86375 1.000 0 0.000
#> SRR1643388 1 0.00 0.86375 1.000 0 0.000
#> SRR1643389 1 0.00 0.86375 1.000 0 0.000
#> SRR1643390 1 0.00 0.86375 1.000 0 0.000
#> SRR1643391 1 0.00 0.86375 1.000 0 0.000
#> SRR1643392 1 0.00 0.86375 1.000 0 0.000
#> SRR1643393 1 0.00 0.86375 1.000 0 0.000
#> SRR1643394 1 0.00 0.86375 1.000 0 0.000
#> SRR1643395 1 0.00 0.86375 1.000 0 0.000
#> SRR1643396 1 0.00 0.86375 1.000 0 0.000
#> SRR1643397 1 0.00 0.86375 1.000 0 0.000
#> SRR1643398 1 0.00 0.86375 1.000 0 0.000
#> SRR1643399 1 0.00 0.86375 1.000 0 0.000
#> SRR1643400 1 0.00 0.86375 1.000 0 0.000
#> SRR1643401 1 0.00 0.86375 1.000 0 0.000
#> SRR1643402 1 0.00 0.86375 1.000 0 0.000
#> SRR1643403 1 0.00 0.86375 1.000 0 0.000
#> SRR1643404 1 0.00 0.86375 1.000 0 0.000
#> SRR1643405 1 0.00 0.86375 1.000 0 0.000
#> SRR1643406 1 0.00 0.86375 1.000 0 0.000
#> SRR1643407 1 0.00 0.86375 1.000 0 0.000
#> SRR1643408 1 0.00 0.86375 1.000 0 0.000
#> SRR1643409 1 0.00 0.86375 1.000 0 0.000
#> SRR1643410 1 0.00 0.86375 1.000 0 0.000
#> SRR1643411 1 0.00 0.86375 1.000 0 0.000
#> SRR1643412 1 0.00 0.86375 1.000 0 0.000
#> SRR1643413 1 0.00 0.86375 1.000 0 0.000
#> SRR1643414 1 0.00 0.86375 1.000 0 0.000
#> SRR1643415 1 0.00 0.86375 1.000 0 0.000
#> SRR1643416 1 0.00 0.86375 1.000 0 0.000
#> SRR1643417 1 0.00 0.86375 1.000 0 0.000
#> SRR1643418 1 0.00 0.86375 1.000 0 0.000
#> SRR1643419 1 0.00 0.86375 1.000 0 0.000
#> SRR1643420 1 0.00 0.86375 1.000 0 0.000
#> SRR1643421 1 0.00 0.86375 1.000 0 0.000
#> SRR1643422 1 0.00 0.86375 1.000 0 0.000
#> SRR1643423 1 0.00 0.86375 1.000 0 0.000
#> SRR1643424 1 0.00 0.86375 1.000 0 0.000
#> SRR1643425 1 0.00 0.86375 1.000 0 0.000
#> SRR1643426 1 0.00 0.86375 1.000 0 0.000
#> SRR1643427 1 0.00 0.86375 1.000 0 0.000
#> SRR1643428 1 0.00 0.86375 1.000 0 0.000
#> SRR1643429 1 0.00 0.86375 1.000 0 0.000
#> SRR1643430 1 0.00 0.86375 1.000 0 0.000
#> SRR1643431 1 0.00 0.86375 1.000 0 0.000
#> SRR1643432 1 0.00 0.86375 1.000 0 0.000
#> SRR1643433 1 0.00 0.86375 1.000 0 0.000
#> SRR1643434 1 0.00 0.86375 1.000 0 0.000
#> SRR1643435 1 0.00 0.86375 1.000 0 0.000
#> SRR1643436 1 0.00 0.86375 1.000 0 0.000
#> SRR1643437 1 0.00 0.86375 1.000 0 0.000
#> SRR1643438 1 0.00 0.86375 1.000 0 0.000
#> SRR1643439 1 0.00 0.86375 1.000 0 0.000
#> SRR1643440 1 0.00 0.86375 1.000 0 0.000
#> SRR1643441 1 0.00 0.86375 1.000 0 0.000
#> SRR1643442 1 0.00 0.86375 1.000 0 0.000
#> SRR1643443 2 0.00 1.00000 0.000 1 0.000
#> SRR1643444 2 0.00 1.00000 0.000 1 0.000
#> SRR1643445 2 0.00 1.00000 0.000 1 0.000
#> SRR1643446 2 0.00 1.00000 0.000 1 0.000
#> SRR1643447 2 0.00 1.00000 0.000 1 0.000
#> SRR1643448 2 0.00 1.00000 0.000 1 0.000
#> SRR1643449 2 0.00 1.00000 0.000 1 0.000
#> SRR1643450 2 0.00 1.00000 0.000 1 0.000
#> SRR1643451 2 0.00 1.00000 0.000 1 0.000
#> SRR1643452 2 0.00 1.00000 0.000 1 0.000
#> SRR1643453 2 0.00 1.00000 0.000 1 0.000
#> SRR1643454 2 0.00 1.00000 0.000 1 0.000
#> SRR1643455 2 0.00 1.00000 0.000 1 0.000
#> SRR1643456 2 0.00 1.00000 0.000 1 0.000
#> SRR1643457 2 0.00 1.00000 0.000 1 0.000
#> SRR1643458 2 0.00 1.00000 0.000 1 0.000
#> SRR1643459 2 0.00 1.00000 0.000 1 0.000
#> SRR1643460 2 0.00 1.00000 0.000 1 0.000
#> SRR1643461 2 0.00 1.00000 0.000 1 0.000
#> SRR1643462 2 0.00 1.00000 0.000 1 0.000
#> SRR1643463 2 0.00 1.00000 0.000 1 0.000
#> SRR1643464 2 0.00 1.00000 0.000 1 0.000
#> SRR1643466 2 0.00 1.00000 0.000 1 0.000
#> SRR1643467 2 0.00 1.00000 0.000 1 0.000
#> SRR1643468 2 0.00 1.00000 0.000 1 0.000
#> SRR1643469 2 0.00 1.00000 0.000 1 0.000
#> SRR1643470 2 0.00 1.00000 0.000 1 0.000
#> SRR1643471 2 0.00 1.00000 0.000 1 0.000
#> SRR1643472 2 0.00 1.00000 0.000 1 0.000
#> SRR1643473 2 0.00 1.00000 0.000 1 0.000
#> SRR1643474 2 0.00 1.00000 0.000 1 0.000
#> SRR1643475 2 0.00 1.00000 0.000 1 0.000
#> SRR1643477 2 0.00 1.00000 0.000 1 0.000
#> SRR1643478 2 0.00 1.00000 0.000 1 0.000
#> SRR1643479 2 0.00 1.00000 0.000 1 0.000
#> SRR1643480 2 0.00 1.00000 0.000 1 0.000
#> SRR1643481 2 0.00 1.00000 0.000 1 0.000
#> SRR1643482 2 0.00 1.00000 0.000 1 0.000
#> SRR1643483 2 0.00 1.00000 0.000 1 0.000
#> SRR1643484 2 0.00 1.00000 0.000 1 0.000
#> SRR1643485 2 0.00 1.00000 0.000 1 0.000
#> SRR1643486 2 0.00 1.00000 0.000 1 0.000
#> SRR1643487 2 0.00 1.00000 0.000 1 0.000
#> SRR1643488 2 0.00 1.00000 0.000 1 0.000
#> SRR1643489 2 0.00 1.00000 0.000 1 0.000
#> SRR1643490 2 0.00 1.00000 0.000 1 0.000
#> SRR1643491 2 0.00 1.00000 0.000 1 0.000
#> SRR1643492 2 0.00 1.00000 0.000 1 0.000
#> SRR1643493 2 0.00 1.00000 0.000 1 0.000
#> SRR1643494 2 0.00 1.00000 0.000 1 0.000
#> SRR1643495 2 0.00 1.00000 0.000 1 0.000
#> SRR1643496 2 0.00 1.00000 0.000 1 0.000
#> SRR1643497 2 0.00 1.00000 0.000 1 0.000
#> SRR1643498 2 0.00 1.00000 0.000 1 0.000
#> SRR1643499 2 0.00 1.00000 0.000 1 0.000
#> SRR1643500 2 0.00 1.00000 0.000 1 0.000
#> SRR1643501 2 0.00 1.00000 0.000 1 0.000
#> SRR1643502 2 0.00 1.00000 0.000 1 0.000
#> SRR1643503 2 0.00 1.00000 0.000 1 0.000
#> SRR1643504 2 0.00 1.00000 0.000 1 0.000
#> SRR1643505 2 0.00 1.00000 0.000 1 0.000
#> SRR1643506 2 0.00 1.00000 0.000 1 0.000
#> SRR1643507 2 0.00 1.00000 0.000 1 0.000
#> SRR1643508 2 0.00 1.00000 0.000 1 0.000
#> SRR1643509 2 0.00 1.00000 0.000 1 0.000
#> SRR1643510 2 0.00 1.00000 0.000 1 0.000
#> SRR1643511 2 0.00 1.00000 0.000 1 0.000
#> SRR1643512 2 0.00 1.00000 0.000 1 0.000
#> SRR1643513 2 0.00 1.00000 0.000 1 0.000
#> SRR1643531 2 0.00 1.00000 0.000 1 0.000
#> SRR1643532 2 0.00 1.00000 0.000 1 0.000
#> SRR1643533 2 0.00 1.00000 0.000 1 0.000
#> SRR1643534 2 0.00 1.00000 0.000 1 0.000
#> SRR1643535 2 0.00 1.00000 0.000 1 0.000
#> SRR1643536 2 0.00 1.00000 0.000 1 0.000
#> SRR1643537 2 0.00 1.00000 0.000 1 0.000
#> SRR1643538 2 0.00 1.00000 0.000 1 0.000
#> SRR1643539 2 0.00 1.00000 0.000 1 0.000
#> SRR1643540 2 0.00 1.00000 0.000 1 0.000
#> SRR1643541 2 0.00 1.00000 0.000 1 0.000
#> SRR1643542 2 0.00 1.00000 0.000 1 0.000
#> SRR1643543 2 0.00 1.00000 0.000 1 0.000
#> SRR1643544 2 0.00 1.00000 0.000 1 0.000
#> SRR1643514 2 0.00 1.00000 0.000 1 0.000
#> SRR1643515 2 0.00 1.00000 0.000 1 0.000
#> SRR1643516 2 0.00 1.00000 0.000 1 0.000
#> SRR1643517 2 0.00 1.00000 0.000 1 0.000
#> SRR1643518 2 0.00 1.00000 0.000 1 0.000
#> SRR1643519 2 0.00 1.00000 0.000 1 0.000
#> SRR1643520 2 0.00 1.00000 0.000 1 0.000
#> SRR1643521 2 0.00 1.00000 0.000 1 0.000
#> SRR1643522 2 0.00 1.00000 0.000 1 0.000
#> SRR1643523 2 0.00 1.00000 0.000 1 0.000
#> SRR1643524 2 0.00 1.00000 0.000 1 0.000
#> SRR1643525 2 0.00 1.00000 0.000 1 0.000
#> SRR1643526 2 0.00 1.00000 0.000 1 0.000
#> SRR1643527 2 0.00 1.00000 0.000 1 0.000
#> SRR1643528 2 0.00 1.00000 0.000 1 0.000
#> SRR1643529 2 0.00 1.00000 0.000 1 0.000
#> SRR1643530 2 0.00 1.00000 0.000 1 0.000
#> SRR1643545 2 0.00 1.00000 0.000 1 0.000
#> SRR1643546 2 0.00 1.00000 0.000 1 0.000
#> SRR1643547 2 0.00 1.00000 0.000 1 0.000
#> SRR1643548 2 0.00 1.00000 0.000 1 0.000
#> SRR1643549 2 0.00 1.00000 0.000 1 0.000
#> SRR1643550 2 0.00 1.00000 0.000 1 0.000
#> SRR1643551 2 0.00 1.00000 0.000 1 0.000
#> SRR1643552 2 0.00 1.00000 0.000 1 0.000
#> SRR1643553 2 0.00 1.00000 0.000 1 0.000
#> SRR1643554 2 0.00 1.00000 0.000 1 0.000
#> SRR1643555 2 0.00 1.00000 0.000 1 0.000
#> SRR1643556 2 0.00 1.00000 0.000 1 0.000
#> SRR1643558 2 0.00 1.00000 0.000 1 0.000
#> SRR1643559 2 0.00 1.00000 0.000 1 0.000
#> SRR1643560 2 0.00 1.00000 0.000 1 0.000
#> SRR1643561 2 0.00 1.00000 0.000 1 0.000
#> SRR1643562 2 0.00 1.00000 0.000 1 0.000
#> SRR1643563 2 0.00 1.00000 0.000 1 0.000
#> SRR1643564 2 0.00 1.00000 0.000 1 0.000
#> SRR1643565 2 0.00 1.00000 0.000 1 0.000
#> SRR1643566 2 0.00 1.00000 0.000 1 0.000
#> SRR1643567 2 0.00 1.00000 0.000 1 0.000
#> SRR1643568 2 0.00 1.00000 0.000 1 0.000
#> SRR1643569 2 0.00 1.00000 0.000 1 0.000
#> SRR1643570 2 0.00 1.00000 0.000 1 0.000
#> SRR1643571 2 0.00 1.00000 0.000 1 0.000
#> SRR1643572 2 0.00 1.00000 0.000 1 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643168 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643169 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643170 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643171 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643172 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643173 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643174 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643175 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643176 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643177 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643178 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643180 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643181 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643182 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643183 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643184 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643185 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643186 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643187 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643188 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643189 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643190 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643191 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643192 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643193 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643194 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643195 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643196 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643197 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643198 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643199 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643200 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643201 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643202 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643203 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643204 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643205 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643206 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643207 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643208 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643209 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643210 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643211 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643212 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643213 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643214 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643215 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643216 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643217 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643218 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643219 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643220 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643221 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643222 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643223 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643224 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643225 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643226 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643227 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643228 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643229 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643230 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643231 4 0.164 1.000 0.060 0.000 0.000 0.94
#> SRR1643232 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643233 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643234 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643235 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643236 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643237 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643238 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643239 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643240 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643241 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643242 4 0.164 1.000 0.060 0.000 0.000 0.94
#> SRR1643243 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643245 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643246 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643247 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643248 3 0.407 1.000 0.252 0.000 0.748 0.00
#> SRR1643249 4 0.164 1.000 0.060 0.000 0.000 0.94
#> SRR1643250 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643251 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643252 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643253 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643254 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643255 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643256 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643257 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643258 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643259 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643260 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643261 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643262 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643263 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643264 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643266 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643267 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643268 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643269 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643270 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643271 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643272 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643273 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643274 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643275 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643276 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643277 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643278 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643279 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643280 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643281 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643282 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643283 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643284 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643285 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643286 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643287 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643288 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643289 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643290 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643291 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643292 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643293 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643294 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643295 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643296 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643297 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643298 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643299 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643300 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643301 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643302 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643303 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643304 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643305 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643306 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643307 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643308 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643309 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643310 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643311 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643312 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643313 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643314 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643315 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643316 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643317 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643318 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643319 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643320 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643321 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643322 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643323 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643324 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643325 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643326 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643327 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643328 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643329 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643330 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643331 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643332 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643333 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643334 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643335 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643336 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643337 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643338 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643339 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643340 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643341 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643342 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643343 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643344 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643345 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643346 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643347 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643348 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643349 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643350 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643351 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643352 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643353 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643354 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643355 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643356 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643357 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643358 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643359 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643360 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643361 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643362 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643363 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643364 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643365 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643366 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643367 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643368 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643369 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643370 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643371 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643372 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643373 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643374 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643375 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643376 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643377 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643378 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643379 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643380 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643381 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643382 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643383 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643384 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643385 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643386 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643387 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643388 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643389 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643390 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643391 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643392 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643393 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643394 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643395 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643396 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643397 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643398 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643399 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643400 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643401 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643402 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643403 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643404 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643405 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643406 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643407 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643408 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643409 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643410 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643411 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643412 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643413 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643414 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643415 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643416 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643417 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643418 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643419 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643420 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643421 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643422 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643423 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643424 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643425 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643426 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643427 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643428 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643429 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643430 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643431 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643432 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643433 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643434 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643435 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643436 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643437 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643438 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643439 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643440 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643441 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643442 1 0.000 1.000 1.000 0.000 0.000 0.00
#> SRR1643443 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643444 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643445 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643446 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643447 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643448 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643449 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643450 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643451 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643452 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643453 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643454 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643455 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643456 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643457 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643458 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643459 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643460 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643461 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643462 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643463 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643464 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643466 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643467 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643468 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643469 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643470 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643471 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643472 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643473 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643474 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643475 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643477 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643478 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643479 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643480 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643481 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643482 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643483 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643484 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643485 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643486 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643487 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643488 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643489 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643490 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643491 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643492 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643493 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643494 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643495 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643496 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643497 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643498 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643499 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643500 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643501 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643502 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643503 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643504 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643505 2 0.558 0.562 0.000 0.688 0.252 0.06
#> SRR1643506 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643507 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643508 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643509 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643510 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643511 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643512 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643513 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643531 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643532 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643533 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643534 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643535 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643536 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643537 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643538 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643539 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643540 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643541 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643542 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643543 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643544 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643514 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643515 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643516 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643517 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643518 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643519 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643520 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643521 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643522 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643523 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643524 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643525 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643526 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643527 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643528 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643529 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643530 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643545 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643546 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643547 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643548 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643549 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643550 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643551 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643552 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643553 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643554 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643555 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643556 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643558 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643559 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643560 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643561 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643562 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643563 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643564 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643565 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643566 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643567 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643568 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643569 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643570 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643571 2 0.000 0.998 0.000 1.000 0.000 0.00
#> SRR1643572 2 0.000 0.998 0.000 1.000 0.000 0.00
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 1 0 1 1 0 0 0 0
#> SRR1643168 1 0 1 1 0 0 0 0
#> SRR1643169 1 0 1 1 0 0 0 0
#> SRR1643170 1 0 1 1 0 0 0 0
#> SRR1643171 1 0 1 1 0 0 0 0
#> SRR1643172 1 0 1 1 0 0 0 0
#> SRR1643173 1 0 1 1 0 0 0 0
#> SRR1643174 1 0 1 1 0 0 0 0
#> SRR1643175 1 0 1 1 0 0 0 0
#> SRR1643176 1 0 1 1 0 0 0 0
#> SRR1643177 1 0 1 1 0 0 0 0
#> SRR1643178 1 0 1 1 0 0 0 0
#> SRR1643180 1 0 1 1 0 0 0 0
#> SRR1643181 1 0 1 1 0 0 0 0
#> SRR1643182 1 0 1 1 0 0 0 0
#> SRR1643183 1 0 1 1 0 0 0 0
#> SRR1643184 1 0 1 1 0 0 0 0
#> SRR1643185 1 0 1 1 0 0 0 0
#> SRR1643186 1 0 1 1 0 0 0 0
#> SRR1643187 1 0 1 1 0 0 0 0
#> SRR1643188 1 0 1 1 0 0 0 0
#> SRR1643189 1 0 1 1 0 0 0 0
#> SRR1643190 1 0 1 1 0 0 0 0
#> SRR1643191 1 0 1 1 0 0 0 0
#> SRR1643192 1 0 1 1 0 0 0 0
#> SRR1643193 1 0 1 1 0 0 0 0
#> SRR1643194 1 0 1 1 0 0 0 0
#> SRR1643195 1 0 1 1 0 0 0 0
#> SRR1643196 1 0 1 1 0 0 0 0
#> SRR1643197 1 0 1 1 0 0 0 0
#> SRR1643198 1 0 1 1 0 0 0 0
#> SRR1643199 1 0 1 1 0 0 0 0
#> SRR1643200 1 0 1 1 0 0 0 0
#> SRR1643201 1 0 1 1 0 0 0 0
#> SRR1643202 1 0 1 1 0 0 0 0
#> SRR1643203 1 0 1 1 0 0 0 0
#> SRR1643204 1 0 1 1 0 0 0 0
#> SRR1643205 3 0 1 0 0 1 0 0
#> SRR1643206 3 0 1 0 0 1 0 0
#> SRR1643207 3 0 1 0 0 1 0 0
#> SRR1643208 3 0 1 0 0 1 0 0
#> SRR1643209 3 0 1 0 0 1 0 0
#> SRR1643210 3 0 1 0 0 1 0 0
#> SRR1643211 3 0 1 0 0 1 0 0
#> SRR1643212 3 0 1 0 0 1 0 0
#> SRR1643213 3 0 1 0 0 1 0 0
#> SRR1643214 3 0 1 0 0 1 0 0
#> SRR1643215 3 0 1 0 0 1 0 0
#> SRR1643216 3 0 1 0 0 1 0 0
#> SRR1643217 3 0 1 0 0 1 0 0
#> SRR1643218 3 0 1 0 0 1 0 0
#> SRR1643219 3 0 1 0 0 1 0 0
#> SRR1643220 3 0 1 0 0 1 0 0
#> SRR1643221 3 0 1 0 0 1 0 0
#> SRR1643222 3 0 1 0 0 1 0 0
#> SRR1643223 3 0 1 0 0 1 0 0
#> SRR1643224 3 0 1 0 0 1 0 0
#> SRR1643225 3 0 1 0 0 1 0 0
#> SRR1643226 3 0 1 0 0 1 0 0
#> SRR1643227 3 0 1 0 0 1 0 0
#> SRR1643228 3 0 1 0 0 1 0 0
#> SRR1643229 3 0 1 0 0 1 0 0
#> SRR1643230 3 0 1 0 0 1 0 0
#> SRR1643231 5 0 1 0 0 0 0 1
#> SRR1643232 3 0 1 0 0 1 0 0
#> SRR1643233 3 0 1 0 0 1 0 0
#> SRR1643234 3 0 1 0 0 1 0 0
#> SRR1643235 3 0 1 0 0 1 0 0
#> SRR1643236 3 0 1 0 0 1 0 0
#> SRR1643237 3 0 1 0 0 1 0 0
#> SRR1643238 3 0 1 0 0 1 0 0
#> SRR1643239 3 0 1 0 0 1 0 0
#> SRR1643240 3 0 1 0 0 1 0 0
#> SRR1643241 3 0 1 0 0 1 0 0
#> SRR1643242 5 0 1 0 0 0 0 1
#> SRR1643243 3 0 1 0 0 1 0 0
#> SRR1643245 3 0 1 0 0 1 0 0
#> SRR1643246 3 0 1 0 0 1 0 0
#> SRR1643247 3 0 1 0 0 1 0 0
#> SRR1643248 3 0 1 0 0 1 0 0
#> SRR1643249 5 0 1 0 0 0 0 1
#> SRR1643250 1 0 1 1 0 0 0 0
#> SRR1643251 1 0 1 1 0 0 0 0
#> SRR1643252 1 0 1 1 0 0 0 0
#> SRR1643253 1 0 1 1 0 0 0 0
#> SRR1643254 1 0 1 1 0 0 0 0
#> SRR1643255 1 0 1 1 0 0 0 0
#> SRR1643256 1 0 1 1 0 0 0 0
#> SRR1643257 1 0 1 1 0 0 0 0
#> SRR1643258 1 0 1 1 0 0 0 0
#> SRR1643259 1 0 1 1 0 0 0 0
#> SRR1643260 1 0 1 1 0 0 0 0
#> SRR1643261 1 0 1 1 0 0 0 0
#> SRR1643262 1 0 1 1 0 0 0 0
#> SRR1643263 1 0 1 1 0 0 0 0
#> SRR1643264 1 0 1 1 0 0 0 0
#> SRR1643266 1 0 1 1 0 0 0 0
#> SRR1643267 1 0 1 1 0 0 0 0
#> SRR1643268 1 0 1 1 0 0 0 0
#> SRR1643269 1 0 1 1 0 0 0 0
#> SRR1643270 1 0 1 1 0 0 0 0
#> SRR1643271 1 0 1 1 0 0 0 0
#> SRR1643272 1 0 1 1 0 0 0 0
#> SRR1643273 1 0 1 1 0 0 0 0
#> SRR1643274 1 0 1 1 0 0 0 0
#> SRR1643275 1 0 1 1 0 0 0 0
#> SRR1643276 1 0 1 1 0 0 0 0
#> SRR1643277 1 0 1 1 0 0 0 0
#> SRR1643278 1 0 1 1 0 0 0 0
#> SRR1643279 1 0 1 1 0 0 0 0
#> SRR1643280 1 0 1 1 0 0 0 0
#> SRR1643281 1 0 1 1 0 0 0 0
#> SRR1643282 1 0 1 1 0 0 0 0
#> SRR1643283 1 0 1 1 0 0 0 0
#> SRR1643284 1 0 1 1 0 0 0 0
#> SRR1643285 1 0 1 1 0 0 0 0
#> SRR1643286 1 0 1 1 0 0 0 0
#> SRR1643287 1 0 1 1 0 0 0 0
#> SRR1643288 1 0 1 1 0 0 0 0
#> SRR1643289 1 0 1 1 0 0 0 0
#> SRR1643290 1 0 1 1 0 0 0 0
#> SRR1643291 1 0 1 1 0 0 0 0
#> SRR1643292 1 0 1 1 0 0 0 0
#> SRR1643293 1 0 1 1 0 0 0 0
#> SRR1643294 1 0 1 1 0 0 0 0
#> SRR1643295 1 0 1 1 0 0 0 0
#> SRR1643296 1 0 1 1 0 0 0 0
#> SRR1643297 1 0 1 1 0 0 0 0
#> SRR1643298 1 0 1 1 0 0 0 0
#> SRR1643299 1 0 1 1 0 0 0 0
#> SRR1643300 1 0 1 1 0 0 0 0
#> SRR1643301 1 0 1 1 0 0 0 0
#> SRR1643302 1 0 1 1 0 0 0 0
#> SRR1643303 1 0 1 1 0 0 0 0
#> SRR1643304 1 0 1 1 0 0 0 0
#> SRR1643305 1 0 1 1 0 0 0 0
#> SRR1643306 1 0 1 1 0 0 0 0
#> SRR1643307 1 0 1 1 0 0 0 0
#> SRR1643308 1 0 1 1 0 0 0 0
#> SRR1643309 1 0 1 1 0 0 0 0
#> SRR1643310 1 0 1 1 0 0 0 0
#> SRR1643311 1 0 1 1 0 0 0 0
#> SRR1643312 1 0 1 1 0 0 0 0
#> SRR1643313 1 0 1 1 0 0 0 0
#> SRR1643314 1 0 1 1 0 0 0 0
#> SRR1643315 1 0 1 1 0 0 0 0
#> SRR1643316 1 0 1 1 0 0 0 0
#> SRR1643317 1 0 1 1 0 0 0 0
#> SRR1643318 1 0 1 1 0 0 0 0
#> SRR1643319 1 0 1 1 0 0 0 0
#> SRR1643320 1 0 1 1 0 0 0 0
#> SRR1643321 1 0 1 1 0 0 0 0
#> SRR1643322 1 0 1 1 0 0 0 0
#> SRR1643323 1 0 1 1 0 0 0 0
#> SRR1643324 1 0 1 1 0 0 0 0
#> SRR1643325 1 0 1 1 0 0 0 0
#> SRR1643326 1 0 1 1 0 0 0 0
#> SRR1643327 1 0 1 1 0 0 0 0
#> SRR1643328 1 0 1 1 0 0 0 0
#> SRR1643329 1 0 1 1 0 0 0 0
#> SRR1643330 1 0 1 1 0 0 0 0
#> SRR1643331 1 0 1 1 0 0 0 0
#> SRR1643332 1 0 1 1 0 0 0 0
#> SRR1643333 1 0 1 1 0 0 0 0
#> SRR1643334 1 0 1 1 0 0 0 0
#> SRR1643335 1 0 1 1 0 0 0 0
#> SRR1643336 1 0 1 1 0 0 0 0
#> SRR1643337 1 0 1 1 0 0 0 0
#> SRR1643338 1 0 1 1 0 0 0 0
#> SRR1643339 1 0 1 1 0 0 0 0
#> SRR1643340 1 0 1 1 0 0 0 0
#> SRR1643341 1 0 1 1 0 0 0 0
#> SRR1643342 1 0 1 1 0 0 0 0
#> SRR1643343 1 0 1 1 0 0 0 0
#> SRR1643344 1 0 1 1 0 0 0 0
#> SRR1643345 1 0 1 1 0 0 0 0
#> SRR1643346 1 0 1 1 0 0 0 0
#> SRR1643347 1 0 1 1 0 0 0 0
#> SRR1643348 1 0 1 1 0 0 0 0
#> SRR1643349 1 0 1 1 0 0 0 0
#> SRR1643350 1 0 1 1 0 0 0 0
#> SRR1643351 1 0 1 1 0 0 0 0
#> SRR1643352 1 0 1 1 0 0 0 0
#> SRR1643353 1 0 1 1 0 0 0 0
#> SRR1643354 1 0 1 1 0 0 0 0
#> SRR1643355 1 0 1 1 0 0 0 0
#> SRR1643356 1 0 1 1 0 0 0 0
#> SRR1643357 1 0 1 1 0 0 0 0
#> SRR1643358 1 0 1 1 0 0 0 0
#> SRR1643359 1 0 1 1 0 0 0 0
#> SRR1643360 1 0 1 1 0 0 0 0
#> SRR1643361 1 0 1 1 0 0 0 0
#> SRR1643362 1 0 1 1 0 0 0 0
#> SRR1643363 1 0 1 1 0 0 0 0
#> SRR1643364 1 0 1 1 0 0 0 0
#> SRR1643365 1 0 1 1 0 0 0 0
#> SRR1643366 1 0 1 1 0 0 0 0
#> SRR1643367 1 0 1 1 0 0 0 0
#> SRR1643368 1 0 1 1 0 0 0 0
#> SRR1643369 1 0 1 1 0 0 0 0
#> SRR1643370 1 0 1 1 0 0 0 0
#> SRR1643371 1 0 1 1 0 0 0 0
#> SRR1643372 1 0 1 1 0 0 0 0
#> SRR1643373 1 0 1 1 0 0 0 0
#> SRR1643374 1 0 1 1 0 0 0 0
#> SRR1643375 1 0 1 1 0 0 0 0
#> SRR1643376 1 0 1 1 0 0 0 0
#> SRR1643377 1 0 1 1 0 0 0 0
#> SRR1643378 1 0 1 1 0 0 0 0
#> SRR1643379 1 0 1 1 0 0 0 0
#> SRR1643380 1 0 1 1 0 0 0 0
#> SRR1643381 1 0 1 1 0 0 0 0
#> SRR1643382 1 0 1 1 0 0 0 0
#> SRR1643383 1 0 1 1 0 0 0 0
#> SRR1643384 1 0 1 1 0 0 0 0
#> SRR1643385 1 0 1 1 0 0 0 0
#> SRR1643386 1 0 1 1 0 0 0 0
#> SRR1643387 1 0 1 1 0 0 0 0
#> SRR1643388 1 0 1 1 0 0 0 0
#> SRR1643389 1 0 1 1 0 0 0 0
#> SRR1643390 1 0 1 1 0 0 0 0
#> SRR1643391 1 0 1 1 0 0 0 0
#> SRR1643392 1 0 1 1 0 0 0 0
#> SRR1643393 1 0 1 1 0 0 0 0
#> SRR1643394 1 0 1 1 0 0 0 0
#> SRR1643395 1 0 1 1 0 0 0 0
#> SRR1643396 1 0 1 1 0 0 0 0
#> SRR1643397 1 0 1 1 0 0 0 0
#> SRR1643398 1 0 1 1 0 0 0 0
#> SRR1643399 1 0 1 1 0 0 0 0
#> SRR1643400 1 0 1 1 0 0 0 0
#> SRR1643401 1 0 1 1 0 0 0 0
#> SRR1643402 1 0 1 1 0 0 0 0
#> SRR1643403 1 0 1 1 0 0 0 0
#> SRR1643404 1 0 1 1 0 0 0 0
#> SRR1643405 1 0 1 1 0 0 0 0
#> SRR1643406 1 0 1 1 0 0 0 0
#> SRR1643407 1 0 1 1 0 0 0 0
#> SRR1643408 1 0 1 1 0 0 0 0
#> SRR1643409 1 0 1 1 0 0 0 0
#> SRR1643410 1 0 1 1 0 0 0 0
#> SRR1643411 1 0 1 1 0 0 0 0
#> SRR1643412 1 0 1 1 0 0 0 0
#> SRR1643413 1 0 1 1 0 0 0 0
#> SRR1643414 1 0 1 1 0 0 0 0
#> SRR1643415 1 0 1 1 0 0 0 0
#> SRR1643416 1 0 1 1 0 0 0 0
#> SRR1643417 1 0 1 1 0 0 0 0
#> SRR1643418 1 0 1 1 0 0 0 0
#> SRR1643419 1 0 1 1 0 0 0 0
#> SRR1643420 1 0 1 1 0 0 0 0
#> SRR1643421 1 0 1 1 0 0 0 0
#> SRR1643422 1 0 1 1 0 0 0 0
#> SRR1643423 1 0 1 1 0 0 0 0
#> SRR1643424 1 0 1 1 0 0 0 0
#> SRR1643425 1 0 1 1 0 0 0 0
#> SRR1643426 1 0 1 1 0 0 0 0
#> SRR1643427 1 0 1 1 0 0 0 0
#> SRR1643428 1 0 1 1 0 0 0 0
#> SRR1643429 1 0 1 1 0 0 0 0
#> SRR1643430 1 0 1 1 0 0 0 0
#> SRR1643431 1 0 1 1 0 0 0 0
#> SRR1643432 1 0 1 1 0 0 0 0
#> SRR1643433 1 0 1 1 0 0 0 0
#> SRR1643434 1 0 1 1 0 0 0 0
#> SRR1643435 1 0 1 1 0 0 0 0
#> SRR1643436 1 0 1 1 0 0 0 0
#> SRR1643437 1 0 1 1 0 0 0 0
#> SRR1643438 1 0 1 1 0 0 0 0
#> SRR1643439 1 0 1 1 0 0 0 0
#> SRR1643440 1 0 1 1 0 0 0 0
#> SRR1643441 1 0 1 1 0 0 0 0
#> SRR1643442 1 0 1 1 0 0 0 0
#> SRR1643443 2 0 1 0 1 0 0 0
#> SRR1643444 2 0 1 0 1 0 0 0
#> SRR1643445 2 0 1 0 1 0 0 0
#> SRR1643446 2 0 1 0 1 0 0 0
#> SRR1643447 2 0 1 0 1 0 0 0
#> SRR1643448 2 0 1 0 1 0 0 0
#> SRR1643449 2 0 1 0 1 0 0 0
#> SRR1643450 2 0 1 0 1 0 0 0
#> SRR1643451 2 0 1 0 1 0 0 0
#> SRR1643452 2 0 1 0 1 0 0 0
#> SRR1643453 2 0 1 0 1 0 0 0
#> SRR1643454 2 0 1 0 1 0 0 0
#> SRR1643455 2 0 1 0 1 0 0 0
#> SRR1643456 2 0 1 0 1 0 0 0
#> SRR1643457 2 0 1 0 1 0 0 0
#> SRR1643458 2 0 1 0 1 0 0 0
#> SRR1643459 2 0 1 0 1 0 0 0
#> SRR1643460 2 0 1 0 1 0 0 0
#> SRR1643461 2 0 1 0 1 0 0 0
#> SRR1643462 2 0 1 0 1 0 0 0
#> SRR1643463 2 0 1 0 1 0 0 0
#> SRR1643464 2 0 1 0 1 0 0 0
#> SRR1643466 2 0 1 0 1 0 0 0
#> SRR1643467 2 0 1 0 1 0 0 0
#> SRR1643468 2 0 1 0 1 0 0 0
#> SRR1643469 2 0 1 0 1 0 0 0
#> SRR1643470 2 0 1 0 1 0 0 0
#> SRR1643471 2 0 1 0 1 0 0 0
#> SRR1643472 2 0 1 0 1 0 0 0
#> SRR1643473 2 0 1 0 1 0 0 0
#> SRR1643474 2 0 1 0 1 0 0 0
#> SRR1643475 2 0 1 0 1 0 0 0
#> SRR1643477 2 0 1 0 1 0 0 0
#> SRR1643478 2 0 1 0 1 0 0 0
#> SRR1643479 2 0 1 0 1 0 0 0
#> SRR1643480 2 0 1 0 1 0 0 0
#> SRR1643481 2 0 1 0 1 0 0 0
#> SRR1643482 2 0 1 0 1 0 0 0
#> SRR1643483 2 0 1 0 1 0 0 0
#> SRR1643484 2 0 1 0 1 0 0 0
#> SRR1643485 2 0 1 0 1 0 0 0
#> SRR1643486 2 0 1 0 1 0 0 0
#> SRR1643487 2 0 1 0 1 0 0 0
#> SRR1643488 2 0 1 0 1 0 0 0
#> SRR1643489 2 0 1 0 1 0 0 0
#> SRR1643490 2 0 1 0 1 0 0 0
#> SRR1643491 2 0 1 0 1 0 0 0
#> SRR1643492 2 0 1 0 1 0 0 0
#> SRR1643493 2 0 1 0 1 0 0 0
#> SRR1643494 2 0 1 0 1 0 0 0
#> SRR1643495 2 0 1 0 1 0 0 0
#> SRR1643496 2 0 1 0 1 0 0 0
#> SRR1643497 2 0 1 0 1 0 0 0
#> SRR1643498 2 0 1 0 1 0 0 0
#> SRR1643499 2 0 1 0 1 0 0 0
#> SRR1643500 2 0 1 0 1 0 0 0
#> SRR1643501 2 0 1 0 1 0 0 0
#> SRR1643502 2 0 1 0 1 0 0 0
#> SRR1643503 2 0 1 0 1 0 0 0
#> SRR1643504 2 0 1 0 1 0 0 0
#> SRR1643505 4 0 0 0 0 0 1 0
#> SRR1643506 2 0 1 0 1 0 0 0
#> SRR1643507 2 0 1 0 1 0 0 0
#> SRR1643508 2 0 1 0 1 0 0 0
#> SRR1643509 2 0 1 0 1 0 0 0
#> SRR1643510 2 0 1 0 1 0 0 0
#> SRR1643511 2 0 1 0 1 0 0 0
#> SRR1643512 2 0 1 0 1 0 0 0
#> SRR1643513 2 0 1 0 1 0 0 0
#> SRR1643531 2 0 1 0 1 0 0 0
#> SRR1643532 2 0 1 0 1 0 0 0
#> SRR1643533 2 0 1 0 1 0 0 0
#> SRR1643534 2 0 1 0 1 0 0 0
#> SRR1643535 2 0 1 0 1 0 0 0
#> SRR1643536 2 0 1 0 1 0 0 0
#> SRR1643537 2 0 1 0 1 0 0 0
#> SRR1643538 2 0 1 0 1 0 0 0
#> SRR1643539 2 0 1 0 1 0 0 0
#> SRR1643540 2 0 1 0 1 0 0 0
#> SRR1643541 2 0 1 0 1 0 0 0
#> SRR1643542 2 0 1 0 1 0 0 0
#> SRR1643543 2 0 1 0 1 0 0 0
#> SRR1643544 2 0 1 0 1 0 0 0
#> SRR1643514 2 0 1 0 1 0 0 0
#> SRR1643515 2 0 1 0 1 0 0 0
#> SRR1643516 2 0 1 0 1 0 0 0
#> SRR1643517 2 0 1 0 1 0 0 0
#> SRR1643518 2 0 1 0 1 0 0 0
#> SRR1643519 2 0 1 0 1 0 0 0
#> SRR1643520 2 0 1 0 1 0 0 0
#> SRR1643521 2 0 1 0 1 0 0 0
#> SRR1643522 2 0 1 0 1 0 0 0
#> SRR1643523 2 0 1 0 1 0 0 0
#> SRR1643524 2 0 1 0 1 0 0 0
#> SRR1643525 2 0 1 0 1 0 0 0
#> SRR1643526 2 0 1 0 1 0 0 0
#> SRR1643527 2 0 1 0 1 0 0 0
#> SRR1643528 2 0 1 0 1 0 0 0
#> SRR1643529 2 0 1 0 1 0 0 0
#> SRR1643530 2 0 1 0 1 0 0 0
#> SRR1643545 2 0 1 0 1 0 0 0
#> SRR1643546 2 0 1 0 1 0 0 0
#> SRR1643547 2 0 1 0 1 0 0 0
#> SRR1643548 2 0 1 0 1 0 0 0
#> SRR1643549 2 0 1 0 1 0 0 0
#> SRR1643550 2 0 1 0 1 0 0 0
#> SRR1643551 2 0 1 0 1 0 0 0
#> SRR1643552 2 0 1 0 1 0 0 0
#> SRR1643553 2 0 1 0 1 0 0 0
#> SRR1643554 2 0 1 0 1 0 0 0
#> SRR1643555 2 0 1 0 1 0 0 0
#> SRR1643556 2 0 1 0 1 0 0 0
#> SRR1643558 2 0 1 0 1 0 0 0
#> SRR1643559 2 0 1 0 1 0 0 0
#> SRR1643560 2 0 1 0 1 0 0 0
#> SRR1643561 2 0 1 0 1 0 0 0
#> SRR1643562 2 0 1 0 1 0 0 0
#> SRR1643563 2 0 1 0 1 0 0 0
#> SRR1643564 2 0 1 0 1 0 0 0
#> SRR1643565 2 0 1 0 1 0 0 0
#> SRR1643566 2 0 1 0 1 0 0 0
#> SRR1643567 2 0 1 0 1 0 0 0
#> SRR1643568 2 0 1 0 1 0 0 0
#> SRR1643569 2 0 1 0 1 0 0 0
#> SRR1643570 2 0 1 0 1 0 0 0
#> SRR1643571 2 0 1 0 1 0 0 0
#> SRR1643572 2 0 1 0 1 0 0 0
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643168 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643169 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643170 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643171 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643172 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643173 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643174 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643175 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643176 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643177 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643178 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643180 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643181 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643182 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643183 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643184 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643185 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643186 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643187 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643188 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643189 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643190 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643191 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643192 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643193 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643194 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643195 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643196 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643197 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643198 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643199 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643200 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643201 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643202 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643203 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643204 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643205 5 0.0363 0.985 0 0 0.012 0 0.988 0
#> SRR1643206 5 0.0363 0.985 0 0 0.012 0 0.988 0
#> SRR1643207 5 0.0363 0.985 0 0 0.012 0 0.988 0
#> SRR1643208 5 0.0363 0.985 0 0 0.012 0 0.988 0
#> SRR1643209 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643210 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643211 5 0.0000 0.995 0 0 0.000 0 1.000 0
#> SRR1643212 5 0.0000 0.995 0 0 0.000 0 1.000 0
#> SRR1643213 5 0.0000 0.995 0 0 0.000 0 1.000 0
#> SRR1643214 5 0.0000 0.995 0 0 0.000 0 1.000 0
#> SRR1643215 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643216 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643217 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643218 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643219 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643220 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643221 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643222 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643223 3 0.1007 0.950 0 0 0.956 0 0.044 0
#> SRR1643224 3 0.1007 0.950 0 0 0.956 0 0.044 0
#> SRR1643225 3 0.1007 0.950 0 0 0.956 0 0.044 0
#> SRR1643226 3 0.1007 0.950 0 0 0.956 0 0.044 0
#> SRR1643227 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643228 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643229 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643230 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643231 4 0.0000 1.000 0 0 0.000 1 0.000 0
#> SRR1643232 5 0.0000 0.995 0 0 0.000 0 1.000 0
#> SRR1643233 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643234 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643235 5 0.0000 0.995 0 0 0.000 0 1.000 0
#> SRR1643236 5 0.0000 0.995 0 0 0.000 0 1.000 0
#> SRR1643237 5 0.0000 0.995 0 0 0.000 0 1.000 0
#> SRR1643238 5 0.0000 0.995 0 0 0.000 0 1.000 0
#> SRR1643239 5 0.0000 0.995 0 0 0.000 0 1.000 0
#> SRR1643240 5 0.0000 0.995 0 0 0.000 0 1.000 0
#> SRR1643241 5 0.0000 0.995 0 0 0.000 0 1.000 0
#> SRR1643242 4 0.0000 1.000 0 0 0.000 1 0.000 0
#> SRR1643243 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643245 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643246 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643247 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643248 3 0.0000 0.991 0 0 1.000 0 0.000 0
#> SRR1643249 4 0.0000 1.000 0 0 0.000 1 0.000 0
#> SRR1643250 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643251 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643252 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643253 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643254 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643255 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643256 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643257 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643258 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643259 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643260 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643261 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643262 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643263 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643264 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643266 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643267 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643268 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643269 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643270 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643271 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643272 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643273 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643274 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643275 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643276 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643277 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643278 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643279 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643280 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643281 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643282 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643283 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643284 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643285 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643286 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643287 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643288 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643289 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643290 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643291 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643292 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643293 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643294 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643295 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643296 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643297 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643298 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643299 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643300 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643301 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643302 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643303 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643304 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643305 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643306 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643307 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643308 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643309 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643310 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643311 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643312 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643313 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643314 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643315 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643316 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643317 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643318 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643319 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643320 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643321 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643322 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643323 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643324 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643325 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643326 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643327 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643328 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643329 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643330 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643331 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643332 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643333 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643334 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643335 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643336 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643337 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643338 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643339 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643340 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643341 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643342 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643343 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643344 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643345 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643346 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643347 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643348 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643349 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643350 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643351 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643352 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643353 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643354 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643355 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643356 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643357 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643358 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643359 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643360 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643361 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643362 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643363 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643364 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643365 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643366 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643367 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643368 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643369 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643370 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643371 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643372 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643373 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643374 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643375 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643376 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643377 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643378 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643379 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643380 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643381 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643382 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643383 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643384 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643385 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643386 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643387 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643388 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643389 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643390 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643391 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643392 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643393 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643394 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643395 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643396 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643397 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643398 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643399 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643400 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643401 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643402 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643403 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643404 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643405 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643406 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643407 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643408 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643409 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643410 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643411 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643412 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643413 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643414 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643415 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643416 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643417 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643418 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643419 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643420 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643421 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643422 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643423 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643424 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643425 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643426 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643427 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643428 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643429 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643430 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643431 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643432 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643433 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643434 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643435 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643436 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643437 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643438 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643439 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643440 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643441 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643442 1 0.0000 1.000 1 0 0.000 0 0.000 0
#> SRR1643443 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643444 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643445 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643446 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643447 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643448 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643449 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643450 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643451 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643452 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643453 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643454 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643455 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643456 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643457 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643458 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643459 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643460 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643461 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643462 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643463 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643464 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643466 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643467 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643468 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643469 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643470 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643471 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643472 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643473 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643474 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643475 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643477 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643478 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643479 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643480 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643481 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643482 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643483 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643484 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643485 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643486 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643487 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643488 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643489 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643490 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643491 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643492 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643493 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643494 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643495 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643496 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643497 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643498 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643499 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643500 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643501 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643502 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643503 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643504 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643505 6 0.0000 0.000 0 0 0.000 0 0.000 1
#> SRR1643506 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643507 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643508 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643509 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643510 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643511 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643512 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643513 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643531 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643532 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643533 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643534 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643535 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643536 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643537 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643538 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643539 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643540 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643541 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643542 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643543 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643544 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643514 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643515 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643516 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643517 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643518 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643519 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643520 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643521 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643522 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643523 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643524 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643525 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643526 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643527 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643528 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643529 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643530 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643545 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643546 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643547 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643548 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643549 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643550 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643551 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643552 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643553 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643554 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643555 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643556 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643558 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643559 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643560 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643561 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643562 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643563 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643564 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643565 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643566 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643567 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643568 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643569 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643570 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643571 2 0.0000 1.000 0 1 0.000 0 0.000 0
#> SRR1643572 2 0.0000 1.000 0 1 0.000 0 0.000 0
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 6)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 6, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["ATC", "kmeans"]
# you can also extract it by
# res = res_list["ATC:kmeans"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'ATC' method.
#> Subgroups are detected by 'kmeans' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 2.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.4350 0.566 0.566
#> 3 3 0.673 0.868 0.838 0.2593 0.876 0.781
#> 4 4 0.549 0.778 0.797 0.1661 1.000 1.000
#> 5 5 0.589 0.462 0.719 0.1026 0.931 0.844
#> 6 6 0.601 0.703 0.689 0.0542 0.836 0.581
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 2
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.4062 0.759 0.836 0.000 0.164
#> SRR1643168 1 0.4062 0.759 0.836 0.000 0.164
#> SRR1643169 1 0.4062 0.759 0.836 0.000 0.164
#> SRR1643170 1 0.4062 0.759 0.836 0.000 0.164
#> SRR1643171 1 0.4235 0.745 0.824 0.000 0.176
#> SRR1643172 1 0.4235 0.745 0.824 0.000 0.176
#> SRR1643173 1 0.4235 0.745 0.824 0.000 0.176
#> SRR1643174 1 0.4235 0.745 0.824 0.000 0.176
#> SRR1643175 1 0.3412 0.791 0.876 0.000 0.124
#> SRR1643176 1 0.3412 0.791 0.876 0.000 0.124
#> SRR1643177 1 0.3412 0.791 0.876 0.000 0.124
#> SRR1643178 1 0.3412 0.791 0.876 0.000 0.124
#> SRR1643180 1 0.4121 0.755 0.832 0.000 0.168
#> SRR1643181 1 0.4121 0.755 0.832 0.000 0.168
#> SRR1643182 1 0.4121 0.755 0.832 0.000 0.168
#> SRR1643183 1 0.4178 0.750 0.828 0.000 0.172
#> SRR1643184 1 0.4178 0.750 0.828 0.000 0.172
#> SRR1643185 1 0.4178 0.750 0.828 0.000 0.172
#> SRR1643186 1 0.4178 0.750 0.828 0.000 0.172
#> SRR1643187 1 0.3267 0.779 0.884 0.000 0.116
#> SRR1643188 1 0.3267 0.779 0.884 0.000 0.116
#> SRR1643189 1 0.3267 0.779 0.884 0.000 0.116
#> SRR1643190 1 0.3267 0.779 0.884 0.000 0.116
#> SRR1643191 1 0.4121 0.753 0.832 0.000 0.168
#> SRR1643192 1 0.4121 0.753 0.832 0.000 0.168
#> SRR1643193 1 0.3816 0.771 0.852 0.000 0.148
#> SRR1643194 1 0.3816 0.771 0.852 0.000 0.148
#> SRR1643195 1 0.3752 0.744 0.856 0.000 0.144
#> SRR1643196 1 0.3752 0.744 0.856 0.000 0.144
#> SRR1643197 1 0.3192 0.816 0.888 0.000 0.112
#> SRR1643198 1 0.3192 0.816 0.888 0.000 0.112
#> SRR1643199 1 0.4121 0.755 0.832 0.000 0.168
#> SRR1643200 1 0.4121 0.755 0.832 0.000 0.168
#> SRR1643201 1 0.4002 0.743 0.840 0.000 0.160
#> SRR1643202 1 0.4002 0.743 0.840 0.000 0.160
#> SRR1643203 1 0.3752 0.772 0.856 0.000 0.144
#> SRR1643204 1 0.3752 0.772 0.856 0.000 0.144
#> SRR1643205 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643206 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643207 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643208 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643209 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643210 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643211 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643212 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643213 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643214 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643215 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643216 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643217 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643218 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643219 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643220 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643221 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643222 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643223 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643224 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643225 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643226 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643227 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643228 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643229 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643230 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643231 3 0.6291 0.982 0.468 0.000 0.532
#> SRR1643232 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643233 3 0.6302 0.990 0.480 0.000 0.520
#> SRR1643234 3 0.6302 0.990 0.480 0.000 0.520
#> SRR1643235 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643236 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643237 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643238 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643239 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643240 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643241 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643242 3 0.6291 0.982 0.468 0.000 0.532
#> SRR1643243 3 0.6295 0.991 0.472 0.000 0.528
#> SRR1643245 3 0.6295 0.991 0.472 0.000 0.528
#> SRR1643246 3 0.6295 0.991 0.472 0.000 0.528
#> SRR1643247 3 0.6295 0.991 0.472 0.000 0.528
#> SRR1643248 3 0.6299 0.998 0.476 0.000 0.524
#> SRR1643249 1 0.5254 0.551 0.736 0.000 0.264
#> SRR1643250 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643251 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643252 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643253 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643254 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643255 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643256 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643257 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643258 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643259 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643260 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643261 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643262 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643263 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643264 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643266 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643267 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643268 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643269 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643270 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643271 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643272 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643273 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643274 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643275 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643276 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643277 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643278 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643279 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643280 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643281 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643282 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643283 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643284 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643285 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643286 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643287 1 0.1964 0.837 0.944 0.000 0.056
#> SRR1643288 1 0.1964 0.837 0.944 0.000 0.056
#> SRR1643289 1 0.1964 0.837 0.944 0.000 0.056
#> SRR1643290 1 0.1964 0.837 0.944 0.000 0.056
#> SRR1643291 1 0.1964 0.837 0.944 0.000 0.056
#> SRR1643292 1 0.1964 0.837 0.944 0.000 0.056
#> SRR1643293 1 0.1964 0.837 0.944 0.000 0.056
#> SRR1643294 1 0.1964 0.837 0.944 0.000 0.056
#> SRR1643295 1 0.1964 0.837 0.944 0.000 0.056
#> SRR1643296 1 0.1964 0.837 0.944 0.000 0.056
#> SRR1643297 1 0.1964 0.837 0.944 0.000 0.056
#> SRR1643298 1 0.1964 0.837 0.944 0.000 0.056
#> SRR1643299 1 0.1964 0.837 0.944 0.000 0.056
#> SRR1643300 1 0.1964 0.837 0.944 0.000 0.056
#> SRR1643301 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643302 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643303 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643304 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643305 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643306 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643307 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643308 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643309 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643310 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643311 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643312 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643313 1 0.1411 0.843 0.964 0.000 0.036
#> SRR1643314 1 0.2959 0.797 0.900 0.000 0.100
#> SRR1643315 1 0.2959 0.797 0.900 0.000 0.100
#> SRR1643316 1 0.2959 0.797 0.900 0.000 0.100
#> SRR1643317 1 0.2959 0.797 0.900 0.000 0.100
#> SRR1643318 1 0.2959 0.797 0.900 0.000 0.100
#> SRR1643319 1 0.2625 0.811 0.916 0.000 0.084
#> SRR1643320 1 0.2959 0.797 0.900 0.000 0.100
#> SRR1643321 1 0.2959 0.797 0.900 0.000 0.100
#> SRR1643322 1 0.2959 0.797 0.900 0.000 0.100
#> SRR1643323 1 0.2959 0.797 0.900 0.000 0.100
#> SRR1643324 1 0.2959 0.797 0.900 0.000 0.100
#> SRR1643325 1 0.2959 0.797 0.900 0.000 0.100
#> SRR1643326 1 0.2959 0.797 0.900 0.000 0.100
#> SRR1643327 1 0.2959 0.797 0.900 0.000 0.100
#> SRR1643328 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643329 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643330 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643331 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643332 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643333 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643334 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643335 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643336 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643337 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643338 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643339 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643340 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643341 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643342 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643343 1 0.1411 0.841 0.964 0.000 0.036
#> SRR1643344 1 0.1411 0.841 0.964 0.000 0.036
#> SRR1643345 1 0.1411 0.841 0.964 0.000 0.036
#> SRR1643346 1 0.1411 0.841 0.964 0.000 0.036
#> SRR1643347 1 0.1411 0.841 0.964 0.000 0.036
#> SRR1643348 1 0.1411 0.841 0.964 0.000 0.036
#> SRR1643349 1 0.1411 0.841 0.964 0.000 0.036
#> SRR1643350 1 0.1411 0.841 0.964 0.000 0.036
#> SRR1643351 1 0.1411 0.841 0.964 0.000 0.036
#> SRR1643352 1 0.1411 0.841 0.964 0.000 0.036
#> SRR1643353 1 0.1411 0.841 0.964 0.000 0.036
#> SRR1643354 1 0.1411 0.841 0.964 0.000 0.036
#> SRR1643355 1 0.1411 0.841 0.964 0.000 0.036
#> SRR1643356 1 0.1411 0.841 0.964 0.000 0.036
#> SRR1643357 1 0.1411 0.841 0.964 0.000 0.036
#> SRR1643358 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643359 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643360 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643361 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643362 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643363 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643364 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643365 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643366 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643367 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643368 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643369 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643370 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643371 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643372 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643373 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643374 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643375 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643376 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643377 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643378 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643379 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643380 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643381 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643382 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643383 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643384 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643385 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643386 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643387 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643388 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643389 1 0.1860 0.839 0.948 0.000 0.052
#> SRR1643390 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643391 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643392 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643393 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643394 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643395 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643396 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643397 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643398 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643399 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643400 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643401 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643402 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643403 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643404 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643405 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643406 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643407 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643408 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643409 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643410 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643411 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643412 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643413 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643414 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643415 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643416 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643417 1 0.3116 0.791 0.892 0.000 0.108
#> SRR1643418 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643419 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643420 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643421 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643422 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643423 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643424 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643425 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643426 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643427 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643428 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643429 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643430 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643431 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643432 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643433 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643434 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643435 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643436 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643437 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643438 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643439 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643440 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643441 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643442 1 0.3412 0.766 0.876 0.000 0.124
#> SRR1643443 2 0.3686 0.930 0.000 0.860 0.140
#> SRR1643444 2 0.3686 0.930 0.000 0.860 0.140
#> SRR1643445 2 0.3686 0.930 0.000 0.860 0.140
#> SRR1643446 2 0.3686 0.930 0.000 0.860 0.140
#> SRR1643447 2 0.3686 0.930 0.000 0.860 0.140
#> SRR1643448 2 0.3686 0.930 0.000 0.860 0.140
#> SRR1643449 2 0.3686 0.930 0.000 0.860 0.140
#> SRR1643450 2 0.3686 0.930 0.000 0.860 0.140
#> SRR1643451 2 0.3686 0.930 0.000 0.860 0.140
#> SRR1643452 2 0.3686 0.930 0.000 0.860 0.140
#> SRR1643453 2 0.3686 0.930 0.000 0.860 0.140
#> SRR1643454 2 0.3686 0.930 0.000 0.860 0.140
#> SRR1643455 2 0.3686 0.930 0.000 0.860 0.140
#> SRR1643456 2 0.0747 0.945 0.000 0.984 0.016
#> SRR1643457 2 0.0747 0.945 0.000 0.984 0.016
#> SRR1643458 2 0.0747 0.945 0.000 0.984 0.016
#> SRR1643459 2 0.0747 0.945 0.000 0.984 0.016
#> SRR1643460 2 0.0747 0.945 0.000 0.984 0.016
#> SRR1643461 2 0.0747 0.945 0.000 0.984 0.016
#> SRR1643462 2 0.0747 0.945 0.000 0.984 0.016
#> SRR1643463 2 0.0747 0.945 0.000 0.984 0.016
#> SRR1643464 2 0.0747 0.945 0.000 0.984 0.016
#> SRR1643466 2 0.0747 0.945 0.000 0.984 0.016
#> SRR1643467 2 0.0747 0.945 0.000 0.984 0.016
#> SRR1643468 2 0.0892 0.945 0.000 0.980 0.020
#> SRR1643469 2 0.0892 0.945 0.000 0.980 0.020
#> SRR1643470 2 0.0892 0.945 0.000 0.980 0.020
#> SRR1643471 2 0.0892 0.945 0.000 0.980 0.020
#> SRR1643472 2 0.0892 0.945 0.000 0.980 0.020
#> SRR1643473 2 0.0892 0.945 0.000 0.980 0.020
#> SRR1643474 2 0.0892 0.945 0.000 0.980 0.020
#> SRR1643475 2 0.0892 0.945 0.000 0.980 0.020
#> SRR1643477 2 0.0892 0.945 0.000 0.980 0.020
#> SRR1643478 2 0.0892 0.945 0.000 0.980 0.020
#> SRR1643479 2 0.0892 0.945 0.000 0.980 0.020
#> SRR1643480 2 0.0892 0.945 0.000 0.980 0.020
#> SRR1643481 2 0.1031 0.945 0.000 0.976 0.024
#> SRR1643482 2 0.1031 0.945 0.000 0.976 0.024
#> SRR1643483 2 0.1031 0.945 0.000 0.976 0.024
#> SRR1643484 2 0.1031 0.945 0.000 0.976 0.024
#> SRR1643485 2 0.1031 0.945 0.000 0.976 0.024
#> SRR1643486 2 0.1031 0.945 0.000 0.976 0.024
#> SRR1643487 2 0.1031 0.945 0.000 0.976 0.024
#> SRR1643488 2 0.1031 0.945 0.000 0.976 0.024
#> SRR1643489 2 0.1031 0.945 0.000 0.976 0.024
#> SRR1643490 2 0.1031 0.945 0.000 0.976 0.024
#> SRR1643491 2 0.1031 0.945 0.000 0.976 0.024
#> SRR1643492 2 0.1031 0.945 0.000 0.976 0.024
#> SRR1643493 2 0.1031 0.945 0.000 0.976 0.024
#> SRR1643494 2 0.1031 0.945 0.000 0.976 0.024
#> SRR1643495 2 0.1031 0.945 0.000 0.976 0.024
#> SRR1643496 2 0.1031 0.945 0.000 0.976 0.024
#> SRR1643497 2 0.1753 0.942 0.000 0.952 0.048
#> SRR1643498 2 0.1753 0.942 0.000 0.952 0.048
#> SRR1643499 2 0.1753 0.942 0.000 0.952 0.048
#> SRR1643500 2 0.1753 0.942 0.000 0.952 0.048
#> SRR1643501 2 0.1753 0.942 0.000 0.952 0.048
#> SRR1643502 2 0.1753 0.942 0.000 0.952 0.048
#> SRR1643503 2 0.1753 0.942 0.000 0.952 0.048
#> SRR1643504 2 0.1753 0.942 0.000 0.952 0.048
#> SRR1643505 2 0.2448 0.944 0.000 0.924 0.076
#> SRR1643506 2 0.1753 0.942 0.000 0.952 0.048
#> SRR1643507 2 0.1753 0.942 0.000 0.952 0.048
#> SRR1643508 2 0.1753 0.942 0.000 0.952 0.048
#> SRR1643509 2 0.1753 0.942 0.000 0.952 0.048
#> SRR1643510 2 0.1753 0.942 0.000 0.952 0.048
#> SRR1643511 2 0.1753 0.942 0.000 0.952 0.048
#> SRR1643512 2 0.1753 0.942 0.000 0.952 0.048
#> SRR1643513 2 0.1753 0.942 0.000 0.952 0.048
#> SRR1643531 2 0.3482 0.930 0.000 0.872 0.128
#> SRR1643532 2 0.3482 0.930 0.000 0.872 0.128
#> SRR1643533 2 0.3482 0.930 0.000 0.872 0.128
#> SRR1643534 2 0.3482 0.930 0.000 0.872 0.128
#> SRR1643535 2 0.3482 0.930 0.000 0.872 0.128
#> SRR1643536 2 0.3482 0.930 0.000 0.872 0.128
#> SRR1643537 2 0.3482 0.930 0.000 0.872 0.128
#> SRR1643538 2 0.3482 0.930 0.000 0.872 0.128
#> SRR1643539 2 0.3482 0.930 0.000 0.872 0.128
#> SRR1643540 2 0.3482 0.930 0.000 0.872 0.128
#> SRR1643541 2 0.3482 0.930 0.000 0.872 0.128
#> SRR1643542 2 0.3482 0.930 0.000 0.872 0.128
#> SRR1643543 2 0.3482 0.930 0.000 0.872 0.128
#> SRR1643544 2 0.3482 0.930 0.000 0.872 0.128
#> SRR1643514 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643515 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643516 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643517 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643518 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643519 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643520 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643521 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643522 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643523 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643524 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643525 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643526 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643527 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643528 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643529 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643530 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643545 2 0.1289 0.945 0.000 0.968 0.032
#> SRR1643546 2 0.1289 0.945 0.000 0.968 0.032
#> SRR1643547 2 0.1289 0.945 0.000 0.968 0.032
#> SRR1643548 2 0.1289 0.945 0.000 0.968 0.032
#> SRR1643549 2 0.1289 0.945 0.000 0.968 0.032
#> SRR1643550 2 0.1289 0.945 0.000 0.968 0.032
#> SRR1643551 2 0.1289 0.945 0.000 0.968 0.032
#> SRR1643552 2 0.1289 0.945 0.000 0.968 0.032
#> SRR1643553 2 0.1289 0.945 0.000 0.968 0.032
#> SRR1643554 2 0.1289 0.945 0.000 0.968 0.032
#> SRR1643555 2 0.1289 0.945 0.000 0.968 0.032
#> SRR1643556 2 0.1289 0.945 0.000 0.968 0.032
#> SRR1643558 2 0.1289 0.945 0.000 0.968 0.032
#> SRR1643559 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643560 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643561 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643562 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643563 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643564 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643565 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643566 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643567 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643568 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643569 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643570 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643571 2 0.3941 0.918 0.000 0.844 0.156
#> SRR1643572 2 0.3941 0.918 0.000 0.844 0.156
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.5845 0.5749 0.672 0.000 0.076 0.252
#> SRR1643168 1 0.5845 0.5749 0.672 0.000 0.076 0.252
#> SRR1643169 1 0.5845 0.5749 0.672 0.000 0.076 0.252
#> SRR1643170 1 0.5845 0.5749 0.672 0.000 0.076 0.252
#> SRR1643171 1 0.5907 0.5650 0.680 0.000 0.092 0.228
#> SRR1643172 1 0.5907 0.5650 0.680 0.000 0.092 0.228
#> SRR1643173 1 0.5907 0.5650 0.680 0.000 0.092 0.228
#> SRR1643174 1 0.5907 0.5650 0.680 0.000 0.092 0.228
#> SRR1643175 1 0.5051 0.6374 0.768 0.000 0.100 0.132
#> SRR1643176 1 0.5051 0.6374 0.768 0.000 0.100 0.132
#> SRR1643177 1 0.5051 0.6374 0.768 0.000 0.100 0.132
#> SRR1643178 1 0.5051 0.6374 0.768 0.000 0.100 0.132
#> SRR1643180 1 0.5968 0.5685 0.664 0.000 0.084 0.252
#> SRR1643181 1 0.5968 0.5685 0.664 0.000 0.084 0.252
#> SRR1643182 1 0.5968 0.5685 0.664 0.000 0.084 0.252
#> SRR1643183 1 0.5968 0.5653 0.672 0.000 0.092 0.236
#> SRR1643184 1 0.5968 0.5653 0.672 0.000 0.092 0.236
#> SRR1643185 1 0.5968 0.5653 0.672 0.000 0.092 0.236
#> SRR1643186 1 0.5968 0.5653 0.672 0.000 0.092 0.236
#> SRR1643187 1 0.5716 0.5825 0.668 0.000 0.060 0.272
#> SRR1643188 1 0.5716 0.5825 0.668 0.000 0.060 0.272
#> SRR1643189 1 0.5716 0.5825 0.668 0.000 0.060 0.272
#> SRR1643190 1 0.5716 0.5825 0.668 0.000 0.060 0.272
#> SRR1643191 1 0.5968 0.5685 0.664 0.000 0.084 0.252
#> SRR1643192 1 0.5968 0.5685 0.664 0.000 0.084 0.252
#> SRR1643193 1 0.5781 0.5780 0.676 0.000 0.072 0.252
#> SRR1643194 1 0.5781 0.5780 0.676 0.000 0.072 0.252
#> SRR1643195 1 0.5855 0.5848 0.600 0.000 0.044 0.356
#> SRR1643196 1 0.5855 0.5848 0.600 0.000 0.044 0.356
#> SRR1643197 1 0.3935 0.6931 0.840 0.000 0.060 0.100
#> SRR1643198 1 0.3935 0.6931 0.840 0.000 0.060 0.100
#> SRR1643199 1 0.5845 0.5749 0.672 0.000 0.076 0.252
#> SRR1643200 1 0.5845 0.5749 0.672 0.000 0.076 0.252
#> SRR1643201 1 0.5672 0.5755 0.668 0.000 0.056 0.276
#> SRR1643202 1 0.5672 0.5755 0.668 0.000 0.056 0.276
#> SRR1643203 1 0.5837 0.5749 0.668 0.000 0.072 0.260
#> SRR1643204 1 0.5837 0.5749 0.668 0.000 0.072 0.260
#> SRR1643205 3 0.4327 0.9861 0.216 0.000 0.768 0.016
#> SRR1643206 3 0.4327 0.9861 0.216 0.000 0.768 0.016
#> SRR1643207 3 0.4327 0.9861 0.216 0.000 0.768 0.016
#> SRR1643208 3 0.4327 0.9861 0.216 0.000 0.768 0.016
#> SRR1643209 3 0.4635 0.9803 0.216 0.000 0.756 0.028
#> SRR1643210 3 0.4635 0.9803 0.216 0.000 0.756 0.028
#> SRR1643211 3 0.4212 0.9865 0.216 0.000 0.772 0.012
#> SRR1643212 3 0.4212 0.9865 0.216 0.000 0.772 0.012
#> SRR1643213 3 0.4212 0.9865 0.216 0.000 0.772 0.012
#> SRR1643214 3 0.4212 0.9865 0.216 0.000 0.772 0.012
#> SRR1643215 3 0.4728 0.9792 0.216 0.000 0.752 0.032
#> SRR1643216 3 0.4728 0.9792 0.216 0.000 0.752 0.032
#> SRR1643217 3 0.4728 0.9792 0.216 0.000 0.752 0.032
#> SRR1643218 3 0.4728 0.9792 0.216 0.000 0.752 0.032
#> SRR1643219 3 0.4728 0.9792 0.216 0.000 0.752 0.032
#> SRR1643220 3 0.4728 0.9792 0.216 0.000 0.752 0.032
#> SRR1643221 3 0.3945 0.9860 0.216 0.000 0.780 0.004
#> SRR1643222 3 0.3945 0.9860 0.216 0.000 0.780 0.004
#> SRR1643223 3 0.4327 0.9861 0.216 0.000 0.768 0.016
#> SRR1643224 3 0.4327 0.9861 0.216 0.000 0.768 0.016
#> SRR1643225 3 0.4327 0.9861 0.216 0.000 0.768 0.016
#> SRR1643226 3 0.4327 0.9861 0.216 0.000 0.768 0.016
#> SRR1643227 3 0.4086 0.9856 0.216 0.000 0.776 0.008
#> SRR1643228 3 0.4086 0.9856 0.216 0.000 0.776 0.008
#> SRR1643229 3 0.4086 0.9856 0.216 0.000 0.776 0.008
#> SRR1643230 3 0.4327 0.9861 0.216 0.000 0.768 0.016
#> SRR1643231 3 0.4212 0.9839 0.216 0.000 0.772 0.012
#> SRR1643232 3 0.4327 0.9861 0.216 0.000 0.768 0.016
#> SRR1643233 3 0.4728 0.9792 0.216 0.000 0.752 0.032
#> SRR1643234 3 0.4728 0.9792 0.216 0.000 0.752 0.032
#> SRR1643235 3 0.4327 0.9861 0.216 0.000 0.768 0.016
#> SRR1643236 3 0.4327 0.9861 0.216 0.000 0.768 0.016
#> SRR1643237 3 0.4327 0.9861 0.216 0.000 0.768 0.016
#> SRR1643238 3 0.4212 0.9865 0.216 0.000 0.772 0.012
#> SRR1643239 3 0.4212 0.9865 0.216 0.000 0.772 0.012
#> SRR1643240 3 0.4212 0.9865 0.216 0.000 0.772 0.012
#> SRR1643241 3 0.4212 0.9865 0.216 0.000 0.772 0.012
#> SRR1643242 3 0.4904 0.9760 0.216 0.000 0.744 0.040
#> SRR1643243 3 0.4781 0.9742 0.212 0.000 0.752 0.036
#> SRR1643245 3 0.4781 0.9742 0.212 0.000 0.752 0.036
#> SRR1643246 3 0.4781 0.9742 0.212 0.000 0.752 0.036
#> SRR1643247 3 0.4781 0.9742 0.212 0.000 0.752 0.036
#> SRR1643248 3 0.4086 0.9856 0.216 0.000 0.776 0.008
#> SRR1643249 1 0.7890 -0.0238 0.372 0.000 0.292 0.336
#> SRR1643250 1 0.3726 0.7304 0.788 0.000 0.000 0.212
#> SRR1643251 1 0.3726 0.7304 0.788 0.000 0.000 0.212
#> SRR1643252 1 0.3726 0.7304 0.788 0.000 0.000 0.212
#> SRR1643253 1 0.3726 0.7304 0.788 0.000 0.000 0.212
#> SRR1643254 1 0.3726 0.7304 0.788 0.000 0.000 0.212
#> SRR1643255 1 0.3726 0.7304 0.788 0.000 0.000 0.212
#> SRR1643256 1 0.3726 0.7304 0.788 0.000 0.000 0.212
#> SRR1643257 1 0.3726 0.7304 0.788 0.000 0.000 0.212
#> SRR1643258 1 0.3726 0.7304 0.788 0.000 0.000 0.212
#> SRR1643259 1 0.3726 0.7304 0.788 0.000 0.000 0.212
#> SRR1643260 1 0.3726 0.7304 0.788 0.000 0.000 0.212
#> SRR1643261 1 0.3726 0.7304 0.788 0.000 0.000 0.212
#> SRR1643262 1 0.3764 0.7298 0.784 0.000 0.000 0.216
#> SRR1643263 1 0.3764 0.7298 0.784 0.000 0.000 0.216
#> SRR1643264 1 0.3764 0.7298 0.784 0.000 0.000 0.216
#> SRR1643266 1 0.3764 0.7298 0.784 0.000 0.000 0.216
#> SRR1643267 1 0.3764 0.7298 0.784 0.000 0.000 0.216
#> SRR1643268 1 0.3764 0.7298 0.784 0.000 0.000 0.216
#> SRR1643269 1 0.3764 0.7298 0.784 0.000 0.000 0.216
#> SRR1643270 1 0.3764 0.7298 0.784 0.000 0.000 0.216
#> SRR1643271 1 0.3764 0.7298 0.784 0.000 0.000 0.216
#> SRR1643272 1 0.3764 0.7298 0.784 0.000 0.000 0.216
#> SRR1643273 1 0.2926 0.7342 0.896 0.000 0.048 0.056
#> SRR1643274 1 0.2926 0.7342 0.896 0.000 0.048 0.056
#> SRR1643275 1 0.2926 0.7342 0.896 0.000 0.048 0.056
#> SRR1643276 1 0.2926 0.7342 0.896 0.000 0.048 0.056
#> SRR1643277 1 0.2926 0.7342 0.896 0.000 0.048 0.056
#> SRR1643278 1 0.2926 0.7342 0.896 0.000 0.048 0.056
#> SRR1643279 1 0.2926 0.7342 0.896 0.000 0.048 0.056
#> SRR1643280 1 0.2926 0.7342 0.896 0.000 0.048 0.056
#> SRR1643281 1 0.2926 0.7342 0.896 0.000 0.048 0.056
#> SRR1643282 1 0.2926 0.7342 0.896 0.000 0.048 0.056
#> SRR1643283 1 0.2926 0.7342 0.896 0.000 0.048 0.056
#> SRR1643284 1 0.2926 0.7342 0.896 0.000 0.048 0.056
#> SRR1643285 1 0.2926 0.7342 0.896 0.000 0.048 0.056
#> SRR1643286 1 0.2926 0.7342 0.896 0.000 0.048 0.056
#> SRR1643287 1 0.4706 0.7076 0.748 0.000 0.028 0.224
#> SRR1643288 1 0.4706 0.7076 0.748 0.000 0.028 0.224
#> SRR1643289 1 0.4706 0.7076 0.748 0.000 0.028 0.224
#> SRR1643290 1 0.4706 0.7076 0.748 0.000 0.028 0.224
#> SRR1643291 1 0.4706 0.7076 0.748 0.000 0.028 0.224
#> SRR1643292 1 0.4706 0.7076 0.748 0.000 0.028 0.224
#> SRR1643293 1 0.4706 0.7076 0.748 0.000 0.028 0.224
#> SRR1643294 1 0.4706 0.7076 0.748 0.000 0.028 0.224
#> SRR1643295 1 0.4706 0.7076 0.748 0.000 0.028 0.224
#> SRR1643296 1 0.4706 0.7076 0.748 0.000 0.028 0.224
#> SRR1643297 1 0.4706 0.7076 0.748 0.000 0.028 0.224
#> SRR1643298 1 0.4706 0.7076 0.748 0.000 0.028 0.224
#> SRR1643299 1 0.4706 0.7076 0.748 0.000 0.028 0.224
#> SRR1643300 1 0.4706 0.7076 0.748 0.000 0.028 0.224
#> SRR1643301 1 0.0921 0.7404 0.972 0.000 0.028 0.000
#> SRR1643302 1 0.0921 0.7404 0.972 0.000 0.028 0.000
#> SRR1643303 1 0.0921 0.7404 0.972 0.000 0.028 0.000
#> SRR1643304 1 0.0921 0.7404 0.972 0.000 0.028 0.000
#> SRR1643305 1 0.0817 0.7415 0.976 0.000 0.024 0.000
#> SRR1643306 1 0.0921 0.7404 0.972 0.000 0.028 0.000
#> SRR1643307 1 0.0921 0.7404 0.972 0.000 0.028 0.000
#> SRR1643308 1 0.0817 0.7415 0.976 0.000 0.024 0.000
#> SRR1643309 1 0.0921 0.7404 0.972 0.000 0.028 0.000
#> SRR1643310 1 0.0817 0.7415 0.976 0.000 0.024 0.000
#> SRR1643311 1 0.0921 0.7404 0.972 0.000 0.028 0.000
#> SRR1643312 1 0.0921 0.7404 0.972 0.000 0.028 0.000
#> SRR1643313 1 0.0921 0.7404 0.972 0.000 0.028 0.000
#> SRR1643314 1 0.2401 0.7144 0.904 0.000 0.092 0.004
#> SRR1643315 1 0.2401 0.7144 0.904 0.000 0.092 0.004
#> SRR1643316 1 0.2401 0.7144 0.904 0.000 0.092 0.004
#> SRR1643317 1 0.2401 0.7144 0.904 0.000 0.092 0.004
#> SRR1643318 1 0.2401 0.7144 0.904 0.000 0.092 0.004
#> SRR1643319 1 0.2334 0.7162 0.908 0.000 0.088 0.004
#> SRR1643320 1 0.2401 0.7144 0.904 0.000 0.092 0.004
#> SRR1643321 1 0.2401 0.7144 0.904 0.000 0.092 0.004
#> SRR1643322 1 0.2401 0.7144 0.904 0.000 0.092 0.004
#> SRR1643323 1 0.2401 0.7144 0.904 0.000 0.092 0.004
#> SRR1643324 1 0.2401 0.7144 0.904 0.000 0.092 0.004
#> SRR1643325 1 0.2401 0.7144 0.904 0.000 0.092 0.004
#> SRR1643326 1 0.2401 0.7144 0.904 0.000 0.092 0.004
#> SRR1643327 1 0.2401 0.7144 0.904 0.000 0.092 0.004
#> SRR1643328 1 0.3271 0.6844 0.856 0.000 0.132 0.012
#> SRR1643329 1 0.3271 0.6844 0.856 0.000 0.132 0.012
#> SRR1643330 1 0.3271 0.6844 0.856 0.000 0.132 0.012
#> SRR1643331 1 0.3271 0.6844 0.856 0.000 0.132 0.012
#> SRR1643332 1 0.3271 0.6844 0.856 0.000 0.132 0.012
#> SRR1643333 1 0.3271 0.6844 0.856 0.000 0.132 0.012
#> SRR1643334 1 0.3217 0.6874 0.860 0.000 0.128 0.012
#> SRR1643335 1 0.3271 0.6844 0.856 0.000 0.132 0.012
#> SRR1643336 1 0.3271 0.6844 0.856 0.000 0.132 0.012
#> SRR1643337 1 0.3271 0.6844 0.856 0.000 0.132 0.012
#> SRR1643338 1 0.3271 0.6844 0.856 0.000 0.132 0.012
#> SRR1643339 1 0.3271 0.6844 0.856 0.000 0.132 0.012
#> SRR1643340 1 0.3271 0.6844 0.856 0.000 0.132 0.012
#> SRR1643341 1 0.3271 0.6844 0.856 0.000 0.132 0.012
#> SRR1643342 1 0.3271 0.6844 0.856 0.000 0.132 0.012
#> SRR1643343 1 0.4800 0.7121 0.760 0.000 0.044 0.196
#> SRR1643344 1 0.4800 0.7121 0.760 0.000 0.044 0.196
#> SRR1643345 1 0.4800 0.7121 0.760 0.000 0.044 0.196
#> SRR1643346 1 0.4800 0.7121 0.760 0.000 0.044 0.196
#> SRR1643347 1 0.4800 0.7121 0.760 0.000 0.044 0.196
#> SRR1643348 1 0.4800 0.7121 0.760 0.000 0.044 0.196
#> SRR1643349 1 0.4800 0.7121 0.760 0.000 0.044 0.196
#> SRR1643350 1 0.4800 0.7121 0.760 0.000 0.044 0.196
#> SRR1643351 1 0.4800 0.7121 0.760 0.000 0.044 0.196
#> SRR1643352 1 0.4800 0.7121 0.760 0.000 0.044 0.196
#> SRR1643353 1 0.4800 0.7121 0.760 0.000 0.044 0.196
#> SRR1643354 1 0.4800 0.7121 0.760 0.000 0.044 0.196
#> SRR1643355 1 0.4800 0.7121 0.760 0.000 0.044 0.196
#> SRR1643356 1 0.4800 0.7121 0.760 0.000 0.044 0.196
#> SRR1643357 1 0.4800 0.7121 0.760 0.000 0.044 0.196
#> SRR1643358 1 0.3837 0.7273 0.776 0.000 0.000 0.224
#> SRR1643359 1 0.3837 0.7273 0.776 0.000 0.000 0.224
#> SRR1643360 1 0.3837 0.7273 0.776 0.000 0.000 0.224
#> SRR1643361 1 0.3837 0.7273 0.776 0.000 0.000 0.224
#> SRR1643362 1 0.3837 0.7273 0.776 0.000 0.000 0.224
#> SRR1643363 1 0.3837 0.7273 0.776 0.000 0.000 0.224
#> SRR1643364 1 0.3837 0.7273 0.776 0.000 0.000 0.224
#> SRR1643365 1 0.3837 0.7273 0.776 0.000 0.000 0.224
#> SRR1643366 1 0.3837 0.7273 0.776 0.000 0.000 0.224
#> SRR1643367 1 0.3837 0.7273 0.776 0.000 0.000 0.224
#> SRR1643368 1 0.3837 0.7273 0.776 0.000 0.000 0.224
#> SRR1643369 1 0.3837 0.7273 0.776 0.000 0.000 0.224
#> SRR1643370 1 0.3837 0.7273 0.776 0.000 0.000 0.224
#> SRR1643371 1 0.3837 0.7273 0.776 0.000 0.000 0.224
#> SRR1643372 1 0.3837 0.7273 0.776 0.000 0.000 0.224
#> SRR1643373 1 0.3873 0.7262 0.772 0.000 0.000 0.228
#> SRR1643374 1 0.3873 0.7262 0.772 0.000 0.000 0.228
#> SRR1643375 1 0.3873 0.7262 0.772 0.000 0.000 0.228
#> SRR1643376 1 0.3873 0.7262 0.772 0.000 0.000 0.228
#> SRR1643377 1 0.3873 0.7262 0.772 0.000 0.000 0.228
#> SRR1643378 1 0.3873 0.7262 0.772 0.000 0.000 0.228
#> SRR1643379 1 0.3873 0.7262 0.772 0.000 0.000 0.228
#> SRR1643380 1 0.3873 0.7262 0.772 0.000 0.000 0.228
#> SRR1643381 1 0.3873 0.7262 0.772 0.000 0.000 0.228
#> SRR1643382 1 0.3873 0.7262 0.772 0.000 0.000 0.228
#> SRR1643383 1 0.3873 0.7262 0.772 0.000 0.000 0.228
#> SRR1643384 1 0.3873 0.7262 0.772 0.000 0.000 0.228
#> SRR1643385 1 0.3873 0.7262 0.772 0.000 0.000 0.228
#> SRR1643386 1 0.3873 0.7262 0.772 0.000 0.000 0.228
#> SRR1643387 1 0.3873 0.7262 0.772 0.000 0.000 0.228
#> SRR1643388 1 0.3873 0.7262 0.772 0.000 0.000 0.228
#> SRR1643389 1 0.3873 0.7262 0.772 0.000 0.000 0.228
#> SRR1643390 1 0.3390 0.6835 0.852 0.000 0.132 0.016
#> SRR1643391 1 0.3390 0.6835 0.852 0.000 0.132 0.016
#> SRR1643392 1 0.3390 0.6835 0.852 0.000 0.132 0.016
#> SRR1643393 1 0.3390 0.6835 0.852 0.000 0.132 0.016
#> SRR1643394 1 0.3390 0.6835 0.852 0.000 0.132 0.016
#> SRR1643395 1 0.3390 0.6835 0.852 0.000 0.132 0.016
#> SRR1643396 1 0.3390 0.6835 0.852 0.000 0.132 0.016
#> SRR1643397 1 0.3390 0.6835 0.852 0.000 0.132 0.016
#> SRR1643398 1 0.3390 0.6835 0.852 0.000 0.132 0.016
#> SRR1643399 1 0.3390 0.6835 0.852 0.000 0.132 0.016
#> SRR1643400 1 0.3390 0.6835 0.852 0.000 0.132 0.016
#> SRR1643401 1 0.3390 0.6835 0.852 0.000 0.132 0.016
#> SRR1643402 1 0.3390 0.6835 0.852 0.000 0.132 0.016
#> SRR1643403 1 0.3390 0.6835 0.852 0.000 0.132 0.016
#> SRR1643404 1 0.3390 0.6835 0.852 0.000 0.132 0.016
#> SRR1643405 1 0.4100 0.6685 0.824 0.000 0.128 0.048
#> SRR1643406 1 0.4100 0.6685 0.824 0.000 0.128 0.048
#> SRR1643407 1 0.4100 0.6685 0.824 0.000 0.128 0.048
#> SRR1643408 1 0.4100 0.6685 0.824 0.000 0.128 0.048
#> SRR1643409 1 0.4100 0.6685 0.824 0.000 0.128 0.048
#> SRR1643410 1 0.4100 0.6685 0.824 0.000 0.128 0.048
#> SRR1643411 1 0.4100 0.6685 0.824 0.000 0.128 0.048
#> SRR1643412 1 0.4100 0.6685 0.824 0.000 0.128 0.048
#> SRR1643413 1 0.4100 0.6685 0.824 0.000 0.128 0.048
#> SRR1643414 1 0.4100 0.6685 0.824 0.000 0.128 0.048
#> SRR1643415 1 0.4100 0.6685 0.824 0.000 0.128 0.048
#> SRR1643416 1 0.4100 0.6685 0.824 0.000 0.128 0.048
#> SRR1643417 1 0.4100 0.6685 0.824 0.000 0.128 0.048
#> SRR1643418 1 0.5040 0.6250 0.628 0.000 0.008 0.364
#> SRR1643419 1 0.5040 0.6250 0.628 0.000 0.008 0.364
#> SRR1643420 1 0.5040 0.6250 0.628 0.000 0.008 0.364
#> SRR1643421 1 0.5040 0.6250 0.628 0.000 0.008 0.364
#> SRR1643422 1 0.5040 0.6250 0.628 0.000 0.008 0.364
#> SRR1643423 1 0.5040 0.6250 0.628 0.000 0.008 0.364
#> SRR1643424 1 0.5040 0.6250 0.628 0.000 0.008 0.364
#> SRR1643425 1 0.5040 0.6250 0.628 0.000 0.008 0.364
#> SRR1643426 1 0.5040 0.6250 0.628 0.000 0.008 0.364
#> SRR1643427 1 0.5040 0.6250 0.628 0.000 0.008 0.364
#> SRR1643428 1 0.5040 0.6250 0.628 0.000 0.008 0.364
#> SRR1643429 1 0.5040 0.6250 0.628 0.000 0.008 0.364
#> SRR1643430 1 0.4837 0.6364 0.648 0.000 0.004 0.348
#> SRR1643431 1 0.4837 0.6364 0.648 0.000 0.004 0.348
#> SRR1643432 1 0.4837 0.6364 0.648 0.000 0.004 0.348
#> SRR1643433 1 0.4837 0.6364 0.648 0.000 0.004 0.348
#> SRR1643434 1 0.4837 0.6364 0.648 0.000 0.004 0.348
#> SRR1643435 1 0.4837 0.6364 0.648 0.000 0.004 0.348
#> SRR1643436 1 0.4837 0.6364 0.648 0.000 0.004 0.348
#> SRR1643437 1 0.4837 0.6364 0.648 0.000 0.004 0.348
#> SRR1643438 1 0.4837 0.6364 0.648 0.000 0.004 0.348
#> SRR1643439 1 0.4837 0.6364 0.648 0.000 0.004 0.348
#> SRR1643440 1 0.4837 0.6364 0.648 0.000 0.004 0.348
#> SRR1643441 1 0.4837 0.6364 0.648 0.000 0.004 0.348
#> SRR1643442 1 0.4837 0.6364 0.648 0.000 0.004 0.348
#> SRR1643443 2 0.4856 0.8804 0.000 0.780 0.084 0.136
#> SRR1643444 2 0.4856 0.8804 0.000 0.780 0.084 0.136
#> SRR1643445 2 0.4856 0.8804 0.000 0.780 0.084 0.136
#> SRR1643446 2 0.4856 0.8804 0.000 0.780 0.084 0.136
#> SRR1643447 2 0.4856 0.8804 0.000 0.780 0.084 0.136
#> SRR1643448 2 0.4856 0.8804 0.000 0.780 0.084 0.136
#> SRR1643449 2 0.4856 0.8804 0.000 0.780 0.084 0.136
#> SRR1643450 2 0.4856 0.8804 0.000 0.780 0.084 0.136
#> SRR1643451 2 0.4856 0.8804 0.000 0.780 0.084 0.136
#> SRR1643452 2 0.4856 0.8804 0.000 0.780 0.084 0.136
#> SRR1643453 2 0.4856 0.8804 0.000 0.780 0.084 0.136
#> SRR1643454 2 0.4856 0.8804 0.000 0.780 0.084 0.136
#> SRR1643455 2 0.4856 0.8804 0.000 0.780 0.084 0.136
#> SRR1643456 2 0.0336 0.9013 0.000 0.992 0.000 0.008
#> SRR1643457 2 0.0336 0.9013 0.000 0.992 0.000 0.008
#> SRR1643458 2 0.0336 0.9013 0.000 0.992 0.000 0.008
#> SRR1643459 2 0.0336 0.9013 0.000 0.992 0.000 0.008
#> SRR1643460 2 0.0336 0.9013 0.000 0.992 0.000 0.008
#> SRR1643461 2 0.0336 0.9013 0.000 0.992 0.000 0.008
#> SRR1643462 2 0.0336 0.9013 0.000 0.992 0.000 0.008
#> SRR1643463 2 0.0336 0.9013 0.000 0.992 0.000 0.008
#> SRR1643464 2 0.0336 0.9013 0.000 0.992 0.000 0.008
#> SRR1643466 2 0.0336 0.9013 0.000 0.992 0.000 0.008
#> SRR1643467 2 0.0336 0.9013 0.000 0.992 0.000 0.008
#> SRR1643468 2 0.0937 0.9008 0.000 0.976 0.012 0.012
#> SRR1643469 2 0.0937 0.9008 0.000 0.976 0.012 0.012
#> SRR1643470 2 0.0937 0.9008 0.000 0.976 0.012 0.012
#> SRR1643471 2 0.0937 0.9008 0.000 0.976 0.012 0.012
#> SRR1643472 2 0.0937 0.9008 0.000 0.976 0.012 0.012
#> SRR1643473 2 0.0937 0.9008 0.000 0.976 0.012 0.012
#> SRR1643474 2 0.0937 0.9008 0.000 0.976 0.012 0.012
#> SRR1643475 2 0.0937 0.9008 0.000 0.976 0.012 0.012
#> SRR1643477 2 0.0937 0.9008 0.000 0.976 0.012 0.012
#> SRR1643478 2 0.0937 0.9008 0.000 0.976 0.012 0.012
#> SRR1643479 2 0.0937 0.9008 0.000 0.976 0.012 0.012
#> SRR1643480 2 0.0937 0.9008 0.000 0.976 0.012 0.012
#> SRR1643481 2 0.0592 0.9012 0.000 0.984 0.000 0.016
#> SRR1643482 2 0.0592 0.9012 0.000 0.984 0.000 0.016
#> SRR1643483 2 0.0592 0.9012 0.000 0.984 0.000 0.016
#> SRR1643484 2 0.0592 0.9012 0.000 0.984 0.000 0.016
#> SRR1643485 2 0.0592 0.9012 0.000 0.984 0.000 0.016
#> SRR1643486 2 0.0592 0.9012 0.000 0.984 0.000 0.016
#> SRR1643487 2 0.0592 0.9012 0.000 0.984 0.000 0.016
#> SRR1643488 2 0.0592 0.9012 0.000 0.984 0.000 0.016
#> SRR1643489 2 0.0592 0.9012 0.000 0.984 0.000 0.016
#> SRR1643490 2 0.0592 0.9012 0.000 0.984 0.000 0.016
#> SRR1643491 2 0.0592 0.9012 0.000 0.984 0.000 0.016
#> SRR1643492 2 0.0592 0.9012 0.000 0.984 0.000 0.016
#> SRR1643493 2 0.0592 0.9012 0.000 0.984 0.000 0.016
#> SRR1643494 2 0.0592 0.9012 0.000 0.984 0.000 0.016
#> SRR1643495 2 0.0592 0.9012 0.000 0.984 0.000 0.016
#> SRR1643496 2 0.0592 0.9012 0.000 0.984 0.000 0.016
#> SRR1643497 2 0.2411 0.8945 0.000 0.920 0.040 0.040
#> SRR1643498 2 0.2411 0.8945 0.000 0.920 0.040 0.040
#> SRR1643499 2 0.2411 0.8945 0.000 0.920 0.040 0.040
#> SRR1643500 2 0.2411 0.8945 0.000 0.920 0.040 0.040
#> SRR1643501 2 0.2411 0.8945 0.000 0.920 0.040 0.040
#> SRR1643502 2 0.2411 0.8945 0.000 0.920 0.040 0.040
#> SRR1643503 2 0.2411 0.8945 0.000 0.920 0.040 0.040
#> SRR1643504 2 0.2411 0.8945 0.000 0.920 0.040 0.040
#> SRR1643505 2 0.3542 0.8946 0.000 0.864 0.060 0.076
#> SRR1643506 2 0.2411 0.8945 0.000 0.920 0.040 0.040
#> SRR1643507 2 0.2411 0.8945 0.000 0.920 0.040 0.040
#> SRR1643508 2 0.2411 0.8945 0.000 0.920 0.040 0.040
#> SRR1643509 2 0.2411 0.8945 0.000 0.920 0.040 0.040
#> SRR1643510 2 0.2411 0.8945 0.000 0.920 0.040 0.040
#> SRR1643511 2 0.2411 0.8945 0.000 0.920 0.040 0.040
#> SRR1643512 2 0.2411 0.8945 0.000 0.920 0.040 0.040
#> SRR1643513 2 0.2411 0.8945 0.000 0.920 0.040 0.040
#> SRR1643531 2 0.4724 0.8785 0.000 0.788 0.076 0.136
#> SRR1643532 2 0.4724 0.8785 0.000 0.788 0.076 0.136
#> SRR1643533 2 0.4724 0.8785 0.000 0.788 0.076 0.136
#> SRR1643534 2 0.4724 0.8785 0.000 0.788 0.076 0.136
#> SRR1643535 2 0.4724 0.8785 0.000 0.788 0.076 0.136
#> SRR1643536 2 0.4724 0.8785 0.000 0.788 0.076 0.136
#> SRR1643537 2 0.4724 0.8785 0.000 0.788 0.076 0.136
#> SRR1643538 2 0.4724 0.8785 0.000 0.788 0.076 0.136
#> SRR1643539 2 0.4724 0.8785 0.000 0.788 0.076 0.136
#> SRR1643540 2 0.4724 0.8785 0.000 0.788 0.076 0.136
#> SRR1643541 2 0.4724 0.8785 0.000 0.788 0.076 0.136
#> SRR1643542 2 0.4724 0.8785 0.000 0.788 0.076 0.136
#> SRR1643543 2 0.4724 0.8785 0.000 0.788 0.076 0.136
#> SRR1643544 2 0.4724 0.8785 0.000 0.788 0.076 0.136
#> SRR1643514 2 0.4867 0.8537 0.000 0.736 0.032 0.232
#> SRR1643515 2 0.4867 0.8537 0.000 0.736 0.032 0.232
#> SRR1643516 2 0.4867 0.8537 0.000 0.736 0.032 0.232
#> SRR1643517 2 0.4867 0.8537 0.000 0.736 0.032 0.232
#> SRR1643518 2 0.4867 0.8537 0.000 0.736 0.032 0.232
#> SRR1643519 2 0.4867 0.8537 0.000 0.736 0.032 0.232
#> SRR1643520 2 0.4867 0.8537 0.000 0.736 0.032 0.232
#> SRR1643521 2 0.4867 0.8537 0.000 0.736 0.032 0.232
#> SRR1643522 2 0.4867 0.8537 0.000 0.736 0.032 0.232
#> SRR1643523 2 0.4867 0.8537 0.000 0.736 0.032 0.232
#> SRR1643524 2 0.4867 0.8537 0.000 0.736 0.032 0.232
#> SRR1643525 2 0.4867 0.8537 0.000 0.736 0.032 0.232
#> SRR1643526 2 0.4867 0.8537 0.000 0.736 0.032 0.232
#> SRR1643527 2 0.4867 0.8537 0.000 0.736 0.032 0.232
#> SRR1643528 2 0.4867 0.8537 0.000 0.736 0.032 0.232
#> SRR1643529 2 0.4867 0.8537 0.000 0.736 0.032 0.232
#> SRR1643530 2 0.4867 0.8537 0.000 0.736 0.032 0.232
#> SRR1643545 2 0.2563 0.8985 0.000 0.908 0.020 0.072
#> SRR1643546 2 0.2563 0.8985 0.000 0.908 0.020 0.072
#> SRR1643547 2 0.2563 0.8985 0.000 0.908 0.020 0.072
#> SRR1643548 2 0.2563 0.8985 0.000 0.908 0.020 0.072
#> SRR1643549 2 0.2563 0.8985 0.000 0.908 0.020 0.072
#> SRR1643550 2 0.2563 0.8985 0.000 0.908 0.020 0.072
#> SRR1643551 2 0.2563 0.8985 0.000 0.908 0.020 0.072
#> SRR1643552 2 0.2563 0.8985 0.000 0.908 0.020 0.072
#> SRR1643553 2 0.2563 0.8985 0.000 0.908 0.020 0.072
#> SRR1643554 2 0.2563 0.8985 0.000 0.908 0.020 0.072
#> SRR1643555 2 0.2563 0.8985 0.000 0.908 0.020 0.072
#> SRR1643556 2 0.2563 0.8985 0.000 0.908 0.020 0.072
#> SRR1643558 2 0.2563 0.8985 0.000 0.908 0.020 0.072
#> SRR1643559 2 0.4867 0.8543 0.000 0.736 0.032 0.232
#> SRR1643560 2 0.4867 0.8543 0.000 0.736 0.032 0.232
#> SRR1643561 2 0.4867 0.8543 0.000 0.736 0.032 0.232
#> SRR1643562 2 0.4867 0.8543 0.000 0.736 0.032 0.232
#> SRR1643563 2 0.4867 0.8543 0.000 0.736 0.032 0.232
#> SRR1643564 2 0.4922 0.8537 0.000 0.736 0.036 0.228
#> SRR1643565 2 0.4867 0.8543 0.000 0.736 0.032 0.232
#> SRR1643566 2 0.4867 0.8543 0.000 0.736 0.032 0.232
#> SRR1643567 2 0.4867 0.8543 0.000 0.736 0.032 0.232
#> SRR1643568 2 0.4867 0.8543 0.000 0.736 0.032 0.232
#> SRR1643569 2 0.4867 0.8543 0.000 0.736 0.032 0.232
#> SRR1643570 2 0.4867 0.8543 0.000 0.736 0.032 0.232
#> SRR1643571 2 0.4867 0.8543 0.000 0.736 0.032 0.232
#> SRR1643572 2 0.4867 0.8543 0.000 0.736 0.032 0.232
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 1 0.6724 -0.2707 0.532 0.000 0.024 0.172 0.272
#> SRR1643168 1 0.6724 -0.2707 0.532 0.000 0.024 0.172 0.272
#> SRR1643169 1 0.6724 -0.2707 0.532 0.000 0.024 0.172 0.272
#> SRR1643170 1 0.6724 -0.2707 0.532 0.000 0.024 0.172 0.272
#> SRR1643171 1 0.6640 -0.2168 0.560 0.000 0.036 0.136 0.268
#> SRR1643172 1 0.6640 -0.2168 0.560 0.000 0.036 0.136 0.268
#> SRR1643173 1 0.6640 -0.2168 0.560 0.000 0.036 0.136 0.268
#> SRR1643174 1 0.6640 -0.2168 0.560 0.000 0.036 0.136 0.268
#> SRR1643175 1 0.5340 0.1899 0.716 0.000 0.028 0.100 0.156
#> SRR1643176 1 0.5340 0.1899 0.716 0.000 0.028 0.100 0.156
#> SRR1643177 1 0.5340 0.1899 0.716 0.000 0.028 0.100 0.156
#> SRR1643178 1 0.5340 0.1899 0.716 0.000 0.028 0.100 0.156
#> SRR1643180 1 0.6724 -0.2707 0.532 0.000 0.024 0.172 0.272
#> SRR1643181 1 0.6724 -0.2707 0.532 0.000 0.024 0.172 0.272
#> SRR1643182 1 0.6724 -0.2707 0.532 0.000 0.024 0.172 0.272
#> SRR1643183 1 0.6723 -0.2277 0.552 0.000 0.036 0.148 0.264
#> SRR1643184 1 0.6723 -0.2277 0.552 0.000 0.036 0.148 0.264
#> SRR1643185 1 0.6723 -0.2277 0.552 0.000 0.036 0.148 0.264
#> SRR1643186 1 0.6723 -0.2277 0.552 0.000 0.036 0.148 0.264
#> SRR1643187 1 0.6908 -0.2854 0.520 0.000 0.032 0.180 0.268
#> SRR1643188 1 0.6908 -0.2854 0.520 0.000 0.032 0.180 0.268
#> SRR1643189 1 0.6908 -0.2854 0.520 0.000 0.032 0.180 0.268
#> SRR1643190 1 0.6908 -0.2854 0.520 0.000 0.032 0.180 0.268
#> SRR1643191 1 0.6836 -0.2717 0.532 0.000 0.032 0.172 0.264
#> SRR1643192 1 0.6836 -0.2717 0.532 0.000 0.032 0.172 0.264
#> SRR1643193 1 0.6752 -0.2705 0.528 0.000 0.024 0.176 0.272
#> SRR1643194 1 0.6752 -0.2705 0.528 0.000 0.024 0.176 0.272
#> SRR1643195 1 0.7315 -0.4151 0.364 0.000 0.024 0.344 0.268
#> SRR1643196 1 0.7315 -0.4151 0.364 0.000 0.024 0.344 0.268
#> SRR1643197 1 0.4693 0.2726 0.768 0.000 0.024 0.076 0.132
#> SRR1643198 1 0.4693 0.2726 0.768 0.000 0.024 0.076 0.132
#> SRR1643199 1 0.6724 -0.2707 0.532 0.000 0.024 0.172 0.272
#> SRR1643200 1 0.6724 -0.2707 0.532 0.000 0.024 0.172 0.272
#> SRR1643201 1 0.6909 -0.3062 0.504 0.000 0.024 0.204 0.268
#> SRR1643202 1 0.6909 -0.3062 0.504 0.000 0.024 0.204 0.268
#> SRR1643203 1 0.6808 -0.2660 0.536 0.000 0.032 0.168 0.264
#> SRR1643204 1 0.6808 -0.2660 0.536 0.000 0.032 0.168 0.264
#> SRR1643205 3 0.2690 0.9666 0.156 0.000 0.844 0.000 0.000
#> SRR1643206 3 0.2690 0.9666 0.156 0.000 0.844 0.000 0.000
#> SRR1643207 3 0.2690 0.9666 0.156 0.000 0.844 0.000 0.000
#> SRR1643208 3 0.2690 0.9666 0.156 0.000 0.844 0.000 0.000
#> SRR1643209 3 0.4415 0.9533 0.156 0.000 0.776 0.020 0.048
#> SRR1643210 3 0.4415 0.9533 0.156 0.000 0.776 0.020 0.048
#> SRR1643211 3 0.2929 0.9647 0.152 0.000 0.840 0.008 0.000
#> SRR1643212 3 0.2929 0.9647 0.152 0.000 0.840 0.008 0.000
#> SRR1643213 3 0.2929 0.9647 0.152 0.000 0.840 0.008 0.000
#> SRR1643214 3 0.2929 0.9647 0.152 0.000 0.840 0.008 0.000
#> SRR1643215 3 0.4375 0.9520 0.152 0.000 0.780 0.020 0.048
#> SRR1643216 3 0.4375 0.9520 0.152 0.000 0.780 0.020 0.048
#> SRR1643217 3 0.4375 0.9520 0.152 0.000 0.780 0.020 0.048
#> SRR1643218 3 0.4375 0.9520 0.152 0.000 0.780 0.020 0.048
#> SRR1643219 3 0.4375 0.9520 0.152 0.000 0.780 0.020 0.048
#> SRR1643220 3 0.4375 0.9520 0.152 0.000 0.780 0.020 0.048
#> SRR1643221 3 0.3252 0.9664 0.156 0.000 0.828 0.008 0.008
#> SRR1643222 3 0.3252 0.9664 0.156 0.000 0.828 0.008 0.008
#> SRR1643223 3 0.2690 0.9666 0.156 0.000 0.844 0.000 0.000
#> SRR1643224 3 0.2690 0.9666 0.156 0.000 0.844 0.000 0.000
#> SRR1643225 3 0.2690 0.9666 0.156 0.000 0.844 0.000 0.000
#> SRR1643226 3 0.2690 0.9666 0.156 0.000 0.844 0.000 0.000
#> SRR1643227 3 0.3648 0.9643 0.156 0.000 0.812 0.008 0.024
#> SRR1643228 3 0.3648 0.9643 0.156 0.000 0.812 0.008 0.024
#> SRR1643229 3 0.3648 0.9643 0.156 0.000 0.812 0.008 0.024
#> SRR1643230 3 0.2848 0.9664 0.156 0.000 0.840 0.004 0.000
#> SRR1643231 3 0.3984 0.9483 0.152 0.000 0.800 0.032 0.016
#> SRR1643232 3 0.2848 0.9660 0.156 0.000 0.840 0.004 0.000
#> SRR1643233 3 0.4415 0.9533 0.156 0.000 0.776 0.020 0.048
#> SRR1643234 3 0.4415 0.9533 0.156 0.000 0.776 0.020 0.048
#> SRR1643235 3 0.2848 0.9660 0.156 0.000 0.840 0.004 0.000
#> SRR1643236 3 0.2806 0.9645 0.152 0.000 0.844 0.004 0.000
#> SRR1643237 3 0.2806 0.9645 0.152 0.000 0.844 0.004 0.000
#> SRR1643238 3 0.2971 0.9661 0.156 0.000 0.836 0.008 0.000
#> SRR1643239 3 0.2971 0.9661 0.156 0.000 0.836 0.008 0.000
#> SRR1643240 3 0.2971 0.9661 0.156 0.000 0.836 0.008 0.000
#> SRR1643241 3 0.2971 0.9661 0.156 0.000 0.836 0.008 0.000
#> SRR1643242 3 0.4890 0.9106 0.136 0.000 0.760 0.048 0.056
#> SRR1643243 3 0.4615 0.9386 0.144 0.000 0.772 0.032 0.052
#> SRR1643245 3 0.4615 0.9386 0.144 0.000 0.772 0.032 0.052
#> SRR1643246 3 0.4615 0.9386 0.144 0.000 0.772 0.032 0.052
#> SRR1643247 3 0.4615 0.9386 0.144 0.000 0.772 0.032 0.052
#> SRR1643248 3 0.3648 0.9643 0.156 0.000 0.812 0.008 0.024
#> SRR1643249 5 0.8518 0.0000 0.248 0.000 0.184 0.264 0.304
#> SRR1643250 1 0.4451 -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643251 1 0.4451 -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643252 1 0.4451 -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643253 1 0.4451 -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643254 1 0.4451 -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643255 1 0.4451 -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643256 1 0.4451 -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643257 1 0.4451 -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643258 1 0.4451 -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643259 1 0.4451 -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643260 1 0.4451 -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643261 1 0.4451 -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643262 1 0.4449 -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643263 1 0.4449 -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643264 1 0.4449 -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643266 1 0.4449 -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643267 1 0.4449 -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643268 1 0.4449 -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643269 1 0.4449 -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643270 1 0.4449 -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643271 1 0.4449 -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643272 1 0.4449 -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643273 1 0.3622 0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643274 1 0.3622 0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643275 1 0.3622 0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643276 1 0.3622 0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643277 1 0.3622 0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643278 1 0.3622 0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643279 1 0.3622 0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643280 1 0.3622 0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643281 1 0.3622 0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643282 1 0.3622 0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643283 1 0.3622 0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643284 1 0.3622 0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643285 1 0.3622 0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643286 1 0.3622 0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643287 1 0.5975 -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643288 1 0.5975 -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643289 1 0.5975 -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643290 1 0.5975 -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643291 1 0.5975 -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643292 1 0.5975 -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643293 1 0.5975 -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643294 1 0.5975 -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643295 1 0.5975 -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643296 1 0.5975 -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643297 1 0.5975 -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643298 1 0.5975 -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643299 1 0.5975 -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643300 1 0.5975 -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643301 1 0.1845 0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643302 1 0.1845 0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643303 1 0.1845 0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643304 1 0.1845 0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643305 1 0.1845 0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643306 1 0.1845 0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643307 1 0.1845 0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643308 1 0.1845 0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643309 1 0.1845 0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643310 1 0.1845 0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643311 1 0.1845 0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643312 1 0.1845 0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643313 1 0.1845 0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643314 1 0.1356 0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643315 1 0.1356 0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643316 1 0.1356 0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643317 1 0.1356 0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643318 1 0.1356 0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643319 1 0.1356 0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643320 1 0.1356 0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643321 1 0.1356 0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643322 1 0.1356 0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643323 1 0.1356 0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643324 1 0.1356 0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643325 1 0.1356 0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643326 1 0.1356 0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643327 1 0.1356 0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643328 1 0.2095 0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643329 1 0.2095 0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643330 1 0.2095 0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643331 1 0.2095 0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643332 1 0.2095 0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643333 1 0.2095 0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643334 1 0.2095 0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643335 1 0.2095 0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643336 1 0.2095 0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643337 1 0.2095 0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643338 1 0.2095 0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643339 1 0.2095 0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643340 1 0.2095 0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643341 1 0.2095 0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643342 1 0.2095 0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643343 1 0.5617 0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643344 1 0.5617 0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643345 1 0.5617 0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643346 1 0.5617 0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643347 1 0.5617 0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643348 1 0.5617 0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643349 1 0.5617 0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643350 1 0.5617 0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643351 1 0.5617 0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643352 1 0.5617 0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643353 1 0.5617 0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643354 1 0.5617 0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643355 1 0.5617 0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643356 1 0.5617 0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643357 1 0.5617 0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643358 1 0.4451 -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643359 1 0.4451 -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643360 1 0.4451 -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643361 1 0.4451 -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643362 1 0.4451 -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643363 1 0.4451 -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643364 1 0.4451 -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643365 1 0.4451 -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643366 1 0.4451 -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643367 1 0.4451 -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643368 1 0.4451 -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643369 1 0.4451 -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643370 1 0.4451 -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643371 1 0.4451 -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643372 1 0.4451 -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643373 1 0.4594 -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643374 1 0.4594 -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643375 1 0.4594 -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643376 1 0.4594 -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643377 1 0.4594 -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643378 1 0.4594 -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643379 1 0.4594 -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643380 1 0.4594 -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643381 4 0.4596 0.3833 0.492 0.000 0.004 0.500 0.004
#> SRR1643382 1 0.4594 -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643383 1 0.4594 -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643384 1 0.4594 -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643385 1 0.4594 -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643386 1 0.4594 -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643387 1 0.4594 -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643388 1 0.4594 -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643389 1 0.4594 -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643390 1 0.1914 0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643391 1 0.1914 0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643392 1 0.1914 0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643393 1 0.1914 0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643394 1 0.1914 0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643395 1 0.1914 0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643396 1 0.1914 0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643397 1 0.1914 0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643398 1 0.1914 0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643399 1 0.1914 0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643400 1 0.1914 0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643401 1 0.1914 0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643402 1 0.1914 0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643403 1 0.1914 0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643404 1 0.1914 0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643405 1 0.2859 0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643406 1 0.2859 0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643407 1 0.2859 0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643408 1 0.2859 0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643409 1 0.2859 0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643410 1 0.2859 0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643411 1 0.2859 0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643412 1 0.2859 0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643413 1 0.2859 0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643414 1 0.2859 0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643415 1 0.2859 0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643416 1 0.2859 0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643417 1 0.2859 0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643418 4 0.5921 0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643419 4 0.5921 0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643420 4 0.5921 0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643421 4 0.5921 0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643422 4 0.5921 0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643423 4 0.5921 0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643424 4 0.5921 0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643425 4 0.5921 0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643426 4 0.5921 0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643427 4 0.5921 0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643428 4 0.5921 0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643429 4 0.5921 0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643430 4 0.5697 0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643431 4 0.5697 0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643432 4 0.5697 0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643433 4 0.5697 0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643434 4 0.5697 0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643435 4 0.5697 0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643436 4 0.5697 0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643437 4 0.5697 0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643438 4 0.5697 0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643439 4 0.5697 0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643440 4 0.5697 0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643441 4 0.5697 0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643442 4 0.5697 0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643443 2 0.5331 0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643444 2 0.5331 0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643445 2 0.5331 0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643446 2 0.5331 0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643447 2 0.5331 0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643448 2 0.5331 0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643449 2 0.5331 0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643450 2 0.5331 0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643451 2 0.5331 0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643452 2 0.5331 0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643453 2 0.5331 0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643454 2 0.5331 0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643455 2 0.5331 0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643456 2 0.0290 0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643457 2 0.0290 0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643458 2 0.0290 0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643459 2 0.0290 0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643460 2 0.0290 0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643461 2 0.0290 0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643462 2 0.0290 0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643463 2 0.0290 0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643464 2 0.0290 0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643466 2 0.0290 0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643467 2 0.0290 0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643468 2 0.0579 0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643469 2 0.0579 0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643470 2 0.0579 0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643471 2 0.0579 0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643472 2 0.0579 0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643473 2 0.0579 0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643474 2 0.0579 0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643475 2 0.0579 0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643477 2 0.0579 0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643478 2 0.0579 0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643479 2 0.0579 0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643480 2 0.0579 0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643481 2 0.0162 0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643482 2 0.0162 0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643483 2 0.0162 0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643484 2 0.0162 0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643485 2 0.0162 0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643486 2 0.0162 0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643487 2 0.0162 0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643488 2 0.0162 0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643489 2 0.0162 0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643490 2 0.0162 0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643491 2 0.0162 0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643492 2 0.0162 0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643493 2 0.0162 0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643494 2 0.0162 0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643495 2 0.0162 0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643496 2 0.0162 0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643497 2 0.2728 0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643498 2 0.2728 0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643499 2 0.2728 0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643500 2 0.2728 0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643501 2 0.2728 0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643502 2 0.2728 0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643503 2 0.2728 0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643504 2 0.2728 0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643505 2 0.4062 0.8364 0.000 0.820 0.032 0.056 0.092
#> SRR1643506 2 0.2728 0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643507 2 0.2728 0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643508 2 0.2728 0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643509 2 0.2728 0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643510 2 0.2728 0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643511 2 0.2728 0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643512 2 0.2728 0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643513 2 0.2728 0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643531 2 0.5519 0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643532 2 0.5519 0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643533 2 0.5519 0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643534 2 0.5519 0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643535 2 0.5519 0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643536 2 0.5519 0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643537 2 0.5519 0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643538 2 0.5519 0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643539 2 0.5519 0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643540 2 0.5519 0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643541 2 0.5519 0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643542 2 0.5519 0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643543 2 0.5519 0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643544 2 0.5519 0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643514 2 0.4530 0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643515 2 0.4530 0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643516 2 0.4530 0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643517 2 0.4530 0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643518 2 0.4530 0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643519 2 0.4530 0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643520 2 0.4530 0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643521 2 0.4530 0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643522 2 0.4530 0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643523 2 0.4530 0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643524 2 0.4530 0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643525 2 0.4530 0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643526 2 0.4530 0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643527 2 0.4530 0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643528 2 0.4530 0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643529 2 0.4530 0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643530 2 0.4530 0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643545 2 0.2411 0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643546 2 0.2411 0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643547 2 0.2411 0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643548 2 0.2411 0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643549 2 0.2411 0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643550 2 0.2411 0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643551 2 0.2411 0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643552 2 0.2411 0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643553 2 0.2411 0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643554 2 0.2411 0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643555 2 0.2411 0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643556 2 0.2411 0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643558 2 0.2411 0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643559 2 0.4150 0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643560 2 0.4150 0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643561 2 0.4150 0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643562 2 0.4150 0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643563 2 0.4150 0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643564 2 0.4150 0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643565 2 0.4150 0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643566 2 0.4150 0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643567 2 0.4150 0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643568 2 0.4150 0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643569 2 0.4150 0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643570 2 0.4150 0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643571 2 0.4150 0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643572 2 0.4150 0.7698 0.000 0.612 0.000 0.000 0.388
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 5 0.4387 0.939 0.404 0.000 0.004 0.020 0.572 NA
#> SRR1643168 5 0.4387 0.939 0.404 0.000 0.004 0.020 0.572 NA
#> SRR1643169 5 0.4387 0.939 0.404 0.000 0.004 0.020 0.572 NA
#> SRR1643170 5 0.4387 0.939 0.404 0.000 0.004 0.020 0.572 NA
#> SRR1643171 5 0.4488 0.916 0.432 0.000 0.004 0.016 0.544 NA
#> SRR1643172 5 0.4488 0.916 0.432 0.000 0.004 0.016 0.544 NA
#> SRR1643173 5 0.4488 0.916 0.432 0.000 0.004 0.016 0.544 NA
#> SRR1643174 5 0.4488 0.916 0.432 0.000 0.004 0.016 0.544 NA
#> SRR1643175 1 0.4995 -0.235 0.620 0.000 0.016 0.024 0.320 NA
#> SRR1643176 1 0.4995 -0.235 0.620 0.000 0.016 0.024 0.320 NA
#> SRR1643177 1 0.4995 -0.235 0.620 0.000 0.016 0.024 0.320 NA
#> SRR1643178 1 0.4995 -0.235 0.620 0.000 0.016 0.024 0.320 NA
#> SRR1643180 5 0.4520 0.939 0.404 0.000 0.004 0.020 0.568 NA
#> SRR1643181 5 0.4520 0.939 0.404 0.000 0.004 0.020 0.568 NA
#> SRR1643182 5 0.4520 0.939 0.404 0.000 0.004 0.020 0.568 NA
#> SRR1643183 5 0.4483 0.922 0.428 0.000 0.004 0.016 0.548 NA
#> SRR1643184 5 0.4483 0.922 0.428 0.000 0.004 0.016 0.548 NA
#> SRR1643185 5 0.4483 0.922 0.428 0.000 0.004 0.016 0.548 NA
#> SRR1643186 5 0.4483 0.922 0.428 0.000 0.004 0.016 0.548 NA
#> SRR1643187 5 0.4784 0.915 0.372 0.000 0.012 0.028 0.584 NA
#> SRR1643188 5 0.4784 0.915 0.372 0.000 0.012 0.028 0.584 NA
#> SRR1643189 5 0.4784 0.915 0.372 0.000 0.012 0.028 0.584 NA
#> SRR1643190 5 0.4784 0.915 0.372 0.000 0.012 0.028 0.584 NA
#> SRR1643191 5 0.4536 0.937 0.408 0.000 0.004 0.028 0.560 NA
#> SRR1643192 5 0.4536 0.937 0.408 0.000 0.004 0.028 0.560 NA
#> SRR1643193 5 0.4452 0.937 0.400 0.000 0.004 0.024 0.572 NA
#> SRR1643194 5 0.4452 0.937 0.400 0.000 0.004 0.024 0.572 NA
#> SRR1643195 5 0.5315 0.760 0.304 0.000 0.000 0.132 0.564 NA
#> SRR1643196 5 0.5315 0.760 0.304 0.000 0.000 0.132 0.564 NA
#> SRR1643197 1 0.4162 0.114 0.720 0.000 0.008 0.024 0.240 NA
#> SRR1643198 1 0.4162 0.114 0.720 0.000 0.008 0.024 0.240 NA
#> SRR1643199 5 0.4387 0.939 0.404 0.000 0.004 0.020 0.572 NA
#> SRR1643200 5 0.4387 0.939 0.404 0.000 0.004 0.020 0.572 NA
#> SRR1643201 5 0.4649 0.906 0.380 0.000 0.000 0.048 0.572 NA
#> SRR1643202 5 0.4649 0.906 0.380 0.000 0.000 0.048 0.572 NA
#> SRR1643203 5 0.4688 0.930 0.392 0.000 0.012 0.020 0.572 NA
#> SRR1643204 5 0.4688 0.930 0.392 0.000 0.012 0.020 0.572 NA
#> SRR1643205 3 0.2416 0.967 0.156 0.000 0.844 0.000 0.000 NA
#> SRR1643206 3 0.2416 0.967 0.156 0.000 0.844 0.000 0.000 NA
#> SRR1643207 3 0.2416 0.967 0.156 0.000 0.844 0.000 0.000 NA
#> SRR1643208 3 0.2416 0.967 0.156 0.000 0.844 0.000 0.000 NA
#> SRR1643209 3 0.4272 0.949 0.144 0.000 0.768 0.004 0.056 NA
#> SRR1643210 3 0.4272 0.949 0.144 0.000 0.768 0.004 0.056 NA
#> SRR1643211 3 0.2558 0.966 0.156 0.000 0.840 0.000 0.000 NA
#> SRR1643212 3 0.2558 0.966 0.156 0.000 0.840 0.000 0.000 NA
#> SRR1643213 3 0.2558 0.966 0.156 0.000 0.840 0.000 0.000 NA
#> SRR1643214 3 0.2558 0.966 0.156 0.000 0.840 0.000 0.000 NA
#> SRR1643215 3 0.4272 0.949 0.144 0.000 0.768 0.004 0.056 NA
#> SRR1643216 3 0.4272 0.949 0.144 0.000 0.768 0.004 0.056 NA
#> SRR1643217 3 0.4272 0.949 0.144 0.000 0.768 0.004 0.056 NA
#> SRR1643218 3 0.4272 0.949 0.144 0.000 0.768 0.004 0.056 NA
#> SRR1643219 3 0.4272 0.949 0.144 0.000 0.768 0.004 0.056 NA
#> SRR1643220 3 0.4272 0.949 0.144 0.000 0.768 0.004 0.056 NA
#> SRR1643221 3 0.3196 0.966 0.156 0.000 0.816 0.000 0.020 NA
#> SRR1643222 3 0.3196 0.966 0.156 0.000 0.816 0.000 0.020 NA
#> SRR1643223 3 0.2558 0.966 0.156 0.000 0.840 0.000 0.004 NA
#> SRR1643224 3 0.2558 0.966 0.156 0.000 0.840 0.000 0.004 NA
#> SRR1643225 3 0.2558 0.966 0.156 0.000 0.840 0.000 0.004 NA
#> SRR1643226 3 0.2558 0.966 0.156 0.000 0.840 0.000 0.004 NA
#> SRR1643227 3 0.3277 0.965 0.156 0.000 0.812 0.000 0.024 NA
#> SRR1643228 3 0.3277 0.965 0.156 0.000 0.812 0.000 0.024 NA
#> SRR1643229 3 0.3239 0.965 0.152 0.000 0.816 0.000 0.024 NA
#> SRR1643230 3 0.2810 0.967 0.156 0.000 0.832 0.000 0.008 NA
#> SRR1643231 3 0.4164 0.943 0.152 0.000 0.772 0.012 0.052 NA
#> SRR1643232 3 0.2558 0.966 0.156 0.000 0.840 0.000 0.000 NA
#> SRR1643233 3 0.4329 0.949 0.144 0.000 0.764 0.004 0.060 NA
#> SRR1643234 3 0.4329 0.949 0.144 0.000 0.764 0.004 0.060 NA
#> SRR1643235 3 0.2416 0.967 0.156 0.000 0.844 0.000 0.000 NA
#> SRR1643236 3 0.2558 0.966 0.156 0.000 0.840 0.000 0.000 NA
#> SRR1643237 3 0.2558 0.966 0.156 0.000 0.840 0.000 0.000 NA
#> SRR1643238 3 0.2378 0.967 0.152 0.000 0.848 0.000 0.000 NA
#> SRR1643239 3 0.2378 0.967 0.152 0.000 0.848 0.000 0.000 NA
#> SRR1643240 3 0.2378 0.967 0.152 0.000 0.848 0.000 0.000 NA
#> SRR1643241 3 0.2378 0.967 0.152 0.000 0.848 0.000 0.000 NA
#> SRR1643242 3 0.5138 0.913 0.140 0.000 0.708 0.016 0.112 NA
#> SRR1643243 3 0.4361 0.942 0.136 0.000 0.768 0.012 0.064 NA
#> SRR1643245 3 0.4361 0.942 0.136 0.000 0.768 0.012 0.064 NA
#> SRR1643246 3 0.4361 0.942 0.136 0.000 0.768 0.012 0.064 NA
#> SRR1643247 3 0.4361 0.942 0.136 0.000 0.768 0.012 0.064 NA
#> SRR1643248 3 0.3239 0.965 0.152 0.000 0.816 0.000 0.024 NA
#> SRR1643249 5 0.5678 0.617 0.184 0.000 0.076 0.068 0.660 NA
#> SRR1643250 4 0.4165 0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643251 4 0.4165 0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643252 4 0.4165 0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643253 4 0.4165 0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643254 4 0.4165 0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643255 4 0.4165 0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643256 4 0.4165 0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643257 4 0.4165 0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643258 4 0.4165 0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643259 4 0.4165 0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643260 4 0.4165 0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643261 4 0.4165 0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643262 4 0.4141 0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643263 4 0.4141 0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643264 4 0.4141 0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643266 4 0.4141 0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643267 4 0.4141 0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643268 4 0.4141 0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643269 4 0.4141 0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643270 4 0.4141 0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643271 4 0.4141 0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643272 4 0.4141 0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643273 1 0.4720 0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643274 1 0.4720 0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643275 1 0.4720 0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643276 1 0.4720 0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643277 1 0.4720 0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643278 1 0.4720 0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643279 1 0.4720 0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643280 1 0.4720 0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643281 1 0.4720 0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643282 1 0.4720 0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643283 1 0.4720 0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643284 1 0.4720 0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643285 1 0.4720 0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643286 1 0.4720 0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643287 1 0.6995 0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643288 1 0.6995 0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643289 1 0.6995 0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643290 1 0.6995 0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643291 1 0.6995 0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643292 1 0.6995 0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643293 1 0.6995 0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643294 1 0.6995 0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643295 1 0.6995 0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643296 1 0.6995 0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643297 1 0.6995 0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643298 1 0.6995 0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643299 1 0.6995 0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643300 1 0.6995 0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643301 1 0.1719 0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643302 1 0.1719 0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643303 1 0.1719 0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643304 1 0.1719 0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643305 1 0.1719 0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643306 1 0.1719 0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643307 1 0.1719 0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643308 1 0.1719 0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643309 1 0.1719 0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643310 1 0.1719 0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643311 1 0.1719 0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643312 1 0.1719 0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643313 1 0.1719 0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643314 1 0.1026 0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643315 1 0.1026 0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643316 1 0.1026 0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643317 1 0.1026 0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643318 1 0.1026 0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643319 1 0.1026 0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643320 1 0.1026 0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643321 1 0.1026 0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643322 1 0.1026 0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643323 1 0.1026 0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643324 1 0.1026 0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643325 1 0.1026 0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643326 1 0.1026 0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643327 1 0.1026 0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643328 1 0.1296 0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643329 1 0.1296 0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643330 1 0.1296 0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643331 1 0.1296 0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643332 1 0.1296 0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643333 1 0.1296 0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643334 1 0.1340 0.650 0.948 0.000 0.040 0.000 0.008 NA
#> SRR1643335 1 0.1296 0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643336 1 0.1296 0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643337 1 0.1296 0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643338 1 0.1296 0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643339 1 0.1296 0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643340 1 0.1296 0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643341 1 0.1296 0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643342 1 0.1296 0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643343 1 0.7075 0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643344 1 0.7075 0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643345 1 0.7075 0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643346 1 0.7075 0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643347 1 0.7075 0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643348 1 0.7075 0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643349 1 0.7075 0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643350 1 0.7075 0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643351 1 0.7075 0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643352 1 0.7075 0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643353 1 0.7075 0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643354 1 0.7075 0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643355 1 0.7075 0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643356 1 0.7075 0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643357 1 0.7075 0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643358 4 0.4385 0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643359 4 0.4385 0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643360 4 0.4385 0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643361 4 0.4385 0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643362 4 0.4385 0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643363 4 0.4385 0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643364 4 0.4385 0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643365 4 0.4385 0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643366 4 0.4385 0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643367 4 0.4385 0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643368 4 0.4385 0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643369 4 0.4385 0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643370 4 0.4385 0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643371 4 0.4385 0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643372 4 0.4385 0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643373 4 0.4344 0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643374 4 0.4344 0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643375 4 0.4344 0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643376 4 0.4344 0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643377 4 0.4344 0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643378 4 0.4344 0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643379 4 0.4344 0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643380 4 0.4344 0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643381 4 0.4344 0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643382 4 0.4344 0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643383 4 0.4344 0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643384 4 0.4344 0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643385 4 0.4344 0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643386 4 0.4344 0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643387 4 0.4344 0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643388 4 0.4344 0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643389 4 0.4344 0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643390 1 0.2825 0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643391 1 0.2825 0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643392 1 0.2825 0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643393 1 0.2825 0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643394 1 0.2825 0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643395 1 0.2825 0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643396 1 0.2699 0.648 0.884 0.000 0.048 0.000 0.040 NA
#> SRR1643397 1 0.2825 0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643398 1 0.2825 0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643399 1 0.2825 0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643400 1 0.2825 0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643401 1 0.2825 0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643402 1 0.2825 0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643403 1 0.2825 0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643404 1 0.2825 0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643405 1 0.3889 0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643406 1 0.3889 0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643407 1 0.3889 0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643408 1 0.3889 0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643409 1 0.3889 0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643410 1 0.3889 0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643411 1 0.3889 0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643412 1 0.3889 0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643413 1 0.3889 0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643414 1 0.3889 0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643415 1 0.3889 0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643416 1 0.3889 0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643417 1 0.3889 0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643418 4 0.6325 0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643419 4 0.6325 0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643420 4 0.6325 0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643421 4 0.6325 0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643422 4 0.6325 0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643423 4 0.6325 0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643424 4 0.6325 0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643425 4 0.6325 0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643426 4 0.6325 0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643427 4 0.6325 0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643428 4 0.6325 0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643429 4 0.6325 0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643430 4 0.5983 0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643431 4 0.5983 0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643432 4 0.5983 0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643433 4 0.5983 0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643434 4 0.5983 0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643435 4 0.5983 0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643436 4 0.5983 0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643437 4 0.5983 0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643438 4 0.5983 0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643439 4 0.5983 0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643440 4 0.5983 0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643441 4 0.5983 0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643442 4 0.5983 0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643443 2 0.5769 0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643444 2 0.5769 0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643445 2 0.5769 0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643446 2 0.5769 0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643447 2 0.5769 0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643448 2 0.5769 0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643449 2 0.5769 0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643450 2 0.5769 0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643451 2 0.5769 0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643452 2 0.5769 0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643453 2 0.5769 0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643454 2 0.5769 0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643455 2 0.5769 0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643456 2 0.0436 0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643457 2 0.0436 0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643458 2 0.0436 0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643459 2 0.0436 0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643460 2 0.0436 0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643461 2 0.0436 0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643462 2 0.0436 0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643463 2 0.0436 0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643464 2 0.0436 0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643466 2 0.0436 0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643467 2 0.0436 0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643468 2 0.0922 0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643469 2 0.0922 0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643470 2 0.0922 0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643471 2 0.0922 0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643472 2 0.0922 0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643473 2 0.0922 0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643474 2 0.0922 0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643475 2 0.0922 0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643477 2 0.0922 0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643478 2 0.0922 0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643479 2 0.0922 0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643480 2 0.0922 0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643481 2 0.0862 0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643482 2 0.0862 0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643483 2 0.0862 0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643484 2 0.0862 0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643485 2 0.0862 0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643486 2 0.0862 0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643487 2 0.0862 0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643488 2 0.0862 0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643489 2 0.0862 0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643490 2 0.0862 0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643491 2 0.0862 0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643492 2 0.0862 0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643493 2 0.0862 0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643494 2 0.0862 0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643495 2 0.0862 0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643496 2 0.0862 0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643497 2 0.3406 0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643498 2 0.3406 0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643499 2 0.3406 0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643500 2 0.3406 0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643501 2 0.3406 0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643502 2 0.3406 0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643503 2 0.3406 0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643504 2 0.3406 0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643505 2 0.5281 0.789 0.000 0.724 0.032 0.052 0.084 NA
#> SRR1643506 2 0.3406 0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643507 2 0.3406 0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643508 2 0.3406 0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643509 2 0.3406 0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643510 2 0.3406 0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643511 2 0.3406 0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643512 2 0.3406 0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643513 2 0.3406 0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643531 2 0.6059 0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643532 2 0.6059 0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643533 2 0.6059 0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643534 2 0.6059 0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643535 2 0.6059 0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643536 2 0.6059 0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643537 2 0.6059 0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643538 2 0.6059 0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643539 2 0.6059 0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643540 2 0.6059 0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643541 2 0.6059 0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643542 2 0.6059 0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643543 2 0.6059 0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643544 2 0.6059 0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643514 2 0.4303 0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643515 2 0.4303 0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643516 2 0.4303 0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643517 2 0.4303 0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643518 2 0.4303 0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643519 2 0.4303 0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643520 2 0.4303 0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643521 2 0.4303 0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643522 2 0.4303 0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643523 2 0.4303 0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643524 2 0.4303 0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643525 2 0.4303 0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643526 2 0.4303 0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643527 2 0.4303 0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643528 2 0.4303 0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643529 2 0.4303 0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643530 2 0.4303 0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643545 2 0.2712 0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643546 2 0.2712 0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643547 2 0.2712 0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643548 2 0.2712 0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643549 2 0.2712 0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643550 2 0.2854 0.802 0.000 0.860 0.004 0.016 0.012 NA
#> SRR1643551 2 0.2712 0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643552 2 0.2712 0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643553 2 0.2712 0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643554 2 0.2712 0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643555 2 0.2712 0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643556 2 0.2712 0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643558 2 0.2712 0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643559 2 0.4258 0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643560 2 0.4258 0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643561 2 0.4258 0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643562 2 0.4258 0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643563 2 0.4258 0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643564 2 0.4331 0.708 0.000 0.516 0.000 0.000 0.020 NA
#> SRR1643565 2 0.4258 0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643566 2 0.4258 0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643567 2 0.4258 0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643568 2 0.4258 0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643569 2 0.4258 0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643570 2 0.4258 0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643571 2 0.4258 0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643572 2 0.4258 0.709 0.000 0.516 0.000 0.000 0.016 NA
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["ATC", "skmeans"]
# you can also extract it by
# res = res_list["ATC:skmeans"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'ATC' method.
#> Subgroups are detected by 'skmeans' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 2.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.4350 0.566 0.566
#> 3 3 0.797 0.949 0.949 0.3252 0.874 0.777
#> 4 4 0.768 0.820 0.887 0.1657 0.936 0.855
#> 5 5 0.774 0.846 0.855 0.0925 0.834 0.578
#> 6 6 0.811 0.825 0.818 0.0538 0.955 0.823
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 2
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.1964 0.918 0.944 0 0.056
#> SRR1643168 1 0.1964 0.918 0.944 0 0.056
#> SRR1643169 1 0.1964 0.918 0.944 0 0.056
#> SRR1643170 1 0.1964 0.918 0.944 0 0.056
#> SRR1643171 1 0.1964 0.918 0.944 0 0.056
#> SRR1643172 1 0.1964 0.918 0.944 0 0.056
#> SRR1643173 1 0.1964 0.918 0.944 0 0.056
#> SRR1643174 1 0.1964 0.918 0.944 0 0.056
#> SRR1643175 1 0.2066 0.917 0.940 0 0.060
#> SRR1643176 1 0.2066 0.917 0.940 0 0.060
#> SRR1643177 1 0.2066 0.917 0.940 0 0.060
#> SRR1643178 1 0.2066 0.917 0.940 0 0.060
#> SRR1643180 1 0.1964 0.918 0.944 0 0.056
#> SRR1643181 1 0.1964 0.918 0.944 0 0.056
#> SRR1643182 1 0.1964 0.918 0.944 0 0.056
#> SRR1643183 1 0.1964 0.918 0.944 0 0.056
#> SRR1643184 1 0.1964 0.918 0.944 0 0.056
#> SRR1643185 1 0.1964 0.918 0.944 0 0.056
#> SRR1643186 1 0.1964 0.918 0.944 0 0.056
#> SRR1643187 1 0.1289 0.924 0.968 0 0.032
#> SRR1643188 1 0.1289 0.924 0.968 0 0.032
#> SRR1643189 1 0.1289 0.924 0.968 0 0.032
#> SRR1643190 1 0.1289 0.924 0.968 0 0.032
#> SRR1643191 1 0.1964 0.918 0.944 0 0.056
#> SRR1643192 1 0.1964 0.918 0.944 0 0.056
#> SRR1643193 1 0.1860 0.920 0.948 0 0.052
#> SRR1643194 1 0.1860 0.920 0.948 0 0.052
#> SRR1643195 1 0.2711 0.908 0.912 0 0.088
#> SRR1643196 1 0.2711 0.908 0.912 0 0.088
#> SRR1643197 1 0.1964 0.918 0.944 0 0.056
#> SRR1643198 1 0.1964 0.918 0.944 0 0.056
#> SRR1643199 1 0.1964 0.918 0.944 0 0.056
#> SRR1643200 1 0.1964 0.918 0.944 0 0.056
#> SRR1643201 1 0.2066 0.920 0.940 0 0.060
#> SRR1643202 1 0.2066 0.920 0.940 0 0.060
#> SRR1643203 1 0.1964 0.918 0.944 0 0.056
#> SRR1643204 1 0.1964 0.918 0.944 0 0.056
#> SRR1643205 3 0.3116 1.000 0.108 0 0.892
#> SRR1643206 3 0.3116 1.000 0.108 0 0.892
#> SRR1643207 3 0.3116 1.000 0.108 0 0.892
#> SRR1643208 3 0.3116 1.000 0.108 0 0.892
#> SRR1643209 3 0.3116 1.000 0.108 0 0.892
#> SRR1643210 3 0.3116 1.000 0.108 0 0.892
#> SRR1643211 3 0.3116 1.000 0.108 0 0.892
#> SRR1643212 3 0.3116 1.000 0.108 0 0.892
#> SRR1643213 3 0.3116 1.000 0.108 0 0.892
#> SRR1643214 3 0.3116 1.000 0.108 0 0.892
#> SRR1643215 3 0.3116 1.000 0.108 0 0.892
#> SRR1643216 3 0.3116 1.000 0.108 0 0.892
#> SRR1643217 3 0.3116 1.000 0.108 0 0.892
#> SRR1643218 3 0.3116 1.000 0.108 0 0.892
#> SRR1643219 3 0.3116 1.000 0.108 0 0.892
#> SRR1643220 3 0.3116 1.000 0.108 0 0.892
#> SRR1643221 3 0.3116 1.000 0.108 0 0.892
#> SRR1643222 3 0.3116 1.000 0.108 0 0.892
#> SRR1643223 3 0.3116 1.000 0.108 0 0.892
#> SRR1643224 3 0.3116 1.000 0.108 0 0.892
#> SRR1643225 3 0.3116 1.000 0.108 0 0.892
#> SRR1643226 3 0.3116 1.000 0.108 0 0.892
#> SRR1643227 3 0.3116 1.000 0.108 0 0.892
#> SRR1643228 3 0.3116 1.000 0.108 0 0.892
#> SRR1643229 3 0.3116 1.000 0.108 0 0.892
#> SRR1643230 3 0.3116 1.000 0.108 0 0.892
#> SRR1643231 3 0.3116 1.000 0.108 0 0.892
#> SRR1643232 3 0.3116 1.000 0.108 0 0.892
#> SRR1643233 3 0.3116 1.000 0.108 0 0.892
#> SRR1643234 3 0.3116 1.000 0.108 0 0.892
#> SRR1643235 3 0.3116 1.000 0.108 0 0.892
#> SRR1643236 3 0.3116 1.000 0.108 0 0.892
#> SRR1643237 3 0.3116 1.000 0.108 0 0.892
#> SRR1643238 3 0.3116 1.000 0.108 0 0.892
#> SRR1643239 3 0.3116 1.000 0.108 0 0.892
#> SRR1643240 3 0.3116 1.000 0.108 0 0.892
#> SRR1643241 3 0.3116 1.000 0.108 0 0.892
#> SRR1643242 3 0.3116 1.000 0.108 0 0.892
#> SRR1643243 3 0.3116 1.000 0.108 0 0.892
#> SRR1643245 3 0.3116 1.000 0.108 0 0.892
#> SRR1643246 3 0.3116 1.000 0.108 0 0.892
#> SRR1643247 3 0.3116 1.000 0.108 0 0.892
#> SRR1643248 3 0.3116 1.000 0.108 0 0.892
#> SRR1643249 3 0.3116 1.000 0.108 0 0.892
#> SRR1643250 1 0.2711 0.908 0.912 0 0.088
#> SRR1643251 1 0.2711 0.908 0.912 0 0.088
#> SRR1643252 1 0.2711 0.908 0.912 0 0.088
#> SRR1643253 1 0.2711 0.908 0.912 0 0.088
#> SRR1643254 1 0.2711 0.908 0.912 0 0.088
#> SRR1643255 1 0.2711 0.908 0.912 0 0.088
#> SRR1643256 1 0.2711 0.908 0.912 0 0.088
#> SRR1643257 1 0.2711 0.908 0.912 0 0.088
#> SRR1643258 1 0.2711 0.908 0.912 0 0.088
#> SRR1643259 1 0.2711 0.908 0.912 0 0.088
#> SRR1643260 1 0.2711 0.908 0.912 0 0.088
#> SRR1643261 1 0.2711 0.908 0.912 0 0.088
#> SRR1643262 1 0.2711 0.908 0.912 0 0.088
#> SRR1643263 1 0.2711 0.908 0.912 0 0.088
#> SRR1643264 1 0.2711 0.908 0.912 0 0.088
#> SRR1643266 1 0.2711 0.908 0.912 0 0.088
#> SRR1643267 1 0.2711 0.908 0.912 0 0.088
#> SRR1643268 1 0.2711 0.908 0.912 0 0.088
#> SRR1643269 1 0.2711 0.908 0.912 0 0.088
#> SRR1643270 1 0.2711 0.908 0.912 0 0.088
#> SRR1643271 1 0.2711 0.908 0.912 0 0.088
#> SRR1643272 1 0.2711 0.908 0.912 0 0.088
#> SRR1643273 1 0.0592 0.925 0.988 0 0.012
#> SRR1643274 1 0.0592 0.925 0.988 0 0.012
#> SRR1643275 1 0.0592 0.925 0.988 0 0.012
#> SRR1643276 1 0.0592 0.925 0.988 0 0.012
#> SRR1643277 1 0.0592 0.925 0.988 0 0.012
#> SRR1643278 1 0.0592 0.925 0.988 0 0.012
#> SRR1643279 1 0.0592 0.925 0.988 0 0.012
#> SRR1643280 1 0.0592 0.925 0.988 0 0.012
#> SRR1643281 1 0.0592 0.925 0.988 0 0.012
#> SRR1643282 1 0.0592 0.925 0.988 0 0.012
#> SRR1643283 1 0.0592 0.925 0.988 0 0.012
#> SRR1643284 1 0.0592 0.925 0.988 0 0.012
#> SRR1643285 1 0.0592 0.925 0.988 0 0.012
#> SRR1643286 1 0.0592 0.925 0.988 0 0.012
#> SRR1643287 1 0.1753 0.921 0.952 0 0.048
#> SRR1643288 1 0.1753 0.921 0.952 0 0.048
#> SRR1643289 1 0.1753 0.921 0.952 0 0.048
#> SRR1643290 1 0.1753 0.921 0.952 0 0.048
#> SRR1643291 1 0.1753 0.921 0.952 0 0.048
#> SRR1643292 1 0.1753 0.921 0.952 0 0.048
#> SRR1643293 1 0.1753 0.921 0.952 0 0.048
#> SRR1643294 1 0.1753 0.921 0.952 0 0.048
#> SRR1643295 1 0.1753 0.921 0.952 0 0.048
#> SRR1643296 1 0.1753 0.921 0.952 0 0.048
#> SRR1643297 1 0.1753 0.921 0.952 0 0.048
#> SRR1643298 1 0.1753 0.921 0.952 0 0.048
#> SRR1643299 1 0.1753 0.921 0.952 0 0.048
#> SRR1643300 1 0.1753 0.921 0.952 0 0.048
#> SRR1643301 1 0.0000 0.926 1.000 0 0.000
#> SRR1643302 1 0.0000 0.926 1.000 0 0.000
#> SRR1643303 1 0.0000 0.926 1.000 0 0.000
#> SRR1643304 1 0.0000 0.926 1.000 0 0.000
#> SRR1643305 1 0.0000 0.926 1.000 0 0.000
#> SRR1643306 1 0.0000 0.926 1.000 0 0.000
#> SRR1643307 1 0.0000 0.926 1.000 0 0.000
#> SRR1643308 1 0.0000 0.926 1.000 0 0.000
#> SRR1643309 1 0.0000 0.926 1.000 0 0.000
#> SRR1643310 1 0.0000 0.926 1.000 0 0.000
#> SRR1643311 1 0.0000 0.926 1.000 0 0.000
#> SRR1643312 1 0.0000 0.926 1.000 0 0.000
#> SRR1643313 1 0.0000 0.926 1.000 0 0.000
#> SRR1643314 1 0.1753 0.921 0.952 0 0.048
#> SRR1643315 1 0.1753 0.921 0.952 0 0.048
#> SRR1643316 1 0.1753 0.921 0.952 0 0.048
#> SRR1643317 1 0.1753 0.921 0.952 0 0.048
#> SRR1643318 1 0.1753 0.921 0.952 0 0.048
#> SRR1643319 1 0.1753 0.921 0.952 0 0.048
#> SRR1643320 1 0.1753 0.921 0.952 0 0.048
#> SRR1643321 1 0.1753 0.921 0.952 0 0.048
#> SRR1643322 1 0.1753 0.921 0.952 0 0.048
#> SRR1643323 1 0.1753 0.921 0.952 0 0.048
#> SRR1643324 1 0.1753 0.921 0.952 0 0.048
#> SRR1643325 1 0.1753 0.921 0.952 0 0.048
#> SRR1643326 1 0.1753 0.921 0.952 0 0.048
#> SRR1643327 1 0.1753 0.921 0.952 0 0.048
#> SRR1643328 1 0.2537 0.906 0.920 0 0.080
#> SRR1643329 1 0.2537 0.906 0.920 0 0.080
#> SRR1643330 1 0.2537 0.906 0.920 0 0.080
#> SRR1643331 1 0.2537 0.906 0.920 0 0.080
#> SRR1643332 1 0.2537 0.906 0.920 0 0.080
#> SRR1643333 1 0.2537 0.906 0.920 0 0.080
#> SRR1643334 1 0.2537 0.906 0.920 0 0.080
#> SRR1643335 1 0.2537 0.906 0.920 0 0.080
#> SRR1643336 1 0.2537 0.906 0.920 0 0.080
#> SRR1643337 1 0.2537 0.906 0.920 0 0.080
#> SRR1643338 1 0.2537 0.906 0.920 0 0.080
#> SRR1643339 1 0.2537 0.906 0.920 0 0.080
#> SRR1643340 1 0.2537 0.906 0.920 0 0.080
#> SRR1643341 1 0.2537 0.906 0.920 0 0.080
#> SRR1643342 1 0.2537 0.906 0.920 0 0.080
#> SRR1643343 1 0.2165 0.914 0.936 0 0.064
#> SRR1643344 1 0.2165 0.914 0.936 0 0.064
#> SRR1643345 1 0.2165 0.914 0.936 0 0.064
#> SRR1643346 1 0.2165 0.914 0.936 0 0.064
#> SRR1643347 1 0.2165 0.914 0.936 0 0.064
#> SRR1643348 1 0.2165 0.914 0.936 0 0.064
#> SRR1643349 1 0.2165 0.914 0.936 0 0.064
#> SRR1643350 1 0.2165 0.914 0.936 0 0.064
#> SRR1643351 1 0.2165 0.914 0.936 0 0.064
#> SRR1643352 1 0.2165 0.914 0.936 0 0.064
#> SRR1643353 1 0.2165 0.914 0.936 0 0.064
#> SRR1643354 1 0.2165 0.914 0.936 0 0.064
#> SRR1643355 1 0.2165 0.914 0.936 0 0.064
#> SRR1643356 1 0.2165 0.914 0.936 0 0.064
#> SRR1643357 1 0.2165 0.914 0.936 0 0.064
#> SRR1643358 1 0.2711 0.908 0.912 0 0.088
#> SRR1643359 1 0.2711 0.908 0.912 0 0.088
#> SRR1643360 1 0.2711 0.908 0.912 0 0.088
#> SRR1643361 1 0.2711 0.908 0.912 0 0.088
#> SRR1643362 1 0.2711 0.908 0.912 0 0.088
#> SRR1643363 1 0.2711 0.908 0.912 0 0.088
#> SRR1643364 1 0.2711 0.908 0.912 0 0.088
#> SRR1643365 1 0.2711 0.908 0.912 0 0.088
#> SRR1643366 1 0.2711 0.908 0.912 0 0.088
#> SRR1643367 1 0.2711 0.908 0.912 0 0.088
#> SRR1643368 1 0.2711 0.908 0.912 0 0.088
#> SRR1643369 1 0.2711 0.908 0.912 0 0.088
#> SRR1643370 1 0.2711 0.908 0.912 0 0.088
#> SRR1643371 1 0.2711 0.908 0.912 0 0.088
#> SRR1643372 1 0.2711 0.908 0.912 0 0.088
#> SRR1643373 1 0.2711 0.908 0.912 0 0.088
#> SRR1643374 1 0.2711 0.908 0.912 0 0.088
#> SRR1643375 1 0.2711 0.908 0.912 0 0.088
#> SRR1643376 1 0.2711 0.908 0.912 0 0.088
#> SRR1643377 1 0.2711 0.908 0.912 0 0.088
#> SRR1643378 1 0.2711 0.908 0.912 0 0.088
#> SRR1643379 1 0.2711 0.908 0.912 0 0.088
#> SRR1643380 1 0.2711 0.908 0.912 0 0.088
#> SRR1643381 1 0.2711 0.908 0.912 0 0.088
#> SRR1643382 1 0.2711 0.908 0.912 0 0.088
#> SRR1643383 1 0.2711 0.908 0.912 0 0.088
#> SRR1643384 1 0.2711 0.908 0.912 0 0.088
#> SRR1643385 1 0.2711 0.908 0.912 0 0.088
#> SRR1643386 1 0.2711 0.908 0.912 0 0.088
#> SRR1643387 1 0.2711 0.908 0.912 0 0.088
#> SRR1643388 1 0.2711 0.908 0.912 0 0.088
#> SRR1643389 1 0.2711 0.908 0.912 0 0.088
#> SRR1643390 1 0.2537 0.906 0.920 0 0.080
#> SRR1643391 1 0.2537 0.906 0.920 0 0.080
#> SRR1643392 1 0.2537 0.906 0.920 0 0.080
#> SRR1643393 1 0.2537 0.906 0.920 0 0.080
#> SRR1643394 1 0.2537 0.906 0.920 0 0.080
#> SRR1643395 1 0.2537 0.906 0.920 0 0.080
#> SRR1643396 1 0.2537 0.906 0.920 0 0.080
#> SRR1643397 1 0.2537 0.906 0.920 0 0.080
#> SRR1643398 1 0.2537 0.906 0.920 0 0.080
#> SRR1643399 1 0.2537 0.906 0.920 0 0.080
#> SRR1643400 1 0.2537 0.906 0.920 0 0.080
#> SRR1643401 1 0.2537 0.906 0.920 0 0.080
#> SRR1643402 1 0.2537 0.906 0.920 0 0.080
#> SRR1643403 1 0.2537 0.906 0.920 0 0.080
#> SRR1643404 1 0.2537 0.906 0.920 0 0.080
#> SRR1643405 1 0.3116 0.886 0.892 0 0.108
#> SRR1643406 1 0.3116 0.886 0.892 0 0.108
#> SRR1643407 1 0.3116 0.886 0.892 0 0.108
#> SRR1643408 1 0.3116 0.886 0.892 0 0.108
#> SRR1643409 1 0.3116 0.886 0.892 0 0.108
#> SRR1643410 1 0.3116 0.886 0.892 0 0.108
#> SRR1643411 1 0.3116 0.886 0.892 0 0.108
#> SRR1643412 1 0.3116 0.886 0.892 0 0.108
#> SRR1643413 1 0.3116 0.886 0.892 0 0.108
#> SRR1643414 1 0.3116 0.886 0.892 0 0.108
#> SRR1643415 1 0.3116 0.886 0.892 0 0.108
#> SRR1643416 1 0.3116 0.886 0.892 0 0.108
#> SRR1643417 1 0.3116 0.886 0.892 0 0.108
#> SRR1643418 1 0.3116 0.896 0.892 0 0.108
#> SRR1643419 1 0.3116 0.896 0.892 0 0.108
#> SRR1643420 1 0.3116 0.896 0.892 0 0.108
#> SRR1643421 1 0.3116 0.896 0.892 0 0.108
#> SRR1643422 1 0.3116 0.896 0.892 0 0.108
#> SRR1643423 1 0.3116 0.896 0.892 0 0.108
#> SRR1643424 1 0.3116 0.896 0.892 0 0.108
#> SRR1643425 1 0.3116 0.896 0.892 0 0.108
#> SRR1643426 1 0.3116 0.896 0.892 0 0.108
#> SRR1643427 1 0.3116 0.896 0.892 0 0.108
#> SRR1643428 1 0.3116 0.896 0.892 0 0.108
#> SRR1643429 1 0.3116 0.896 0.892 0 0.108
#> SRR1643430 1 0.3116 0.896 0.892 0 0.108
#> SRR1643431 1 0.3116 0.896 0.892 0 0.108
#> SRR1643432 1 0.3116 0.896 0.892 0 0.108
#> SRR1643433 1 0.3116 0.896 0.892 0 0.108
#> SRR1643434 1 0.3116 0.896 0.892 0 0.108
#> SRR1643435 1 0.3116 0.896 0.892 0 0.108
#> SRR1643436 1 0.3116 0.896 0.892 0 0.108
#> SRR1643437 1 0.3116 0.896 0.892 0 0.108
#> SRR1643438 1 0.3116 0.896 0.892 0 0.108
#> SRR1643439 1 0.3116 0.896 0.892 0 0.108
#> SRR1643440 1 0.3116 0.896 0.892 0 0.108
#> SRR1643441 1 0.3116 0.896 0.892 0 0.108
#> SRR1643442 1 0.3116 0.896 0.892 0 0.108
#> SRR1643443 2 0.0000 1.000 0.000 1 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0.000
#> SRR1643505 2 0.0000 1.000 0.000 1 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.3934 0.717 0.836 0.000 0.048 0.116
#> SRR1643168 1 0.3934 0.717 0.836 0.000 0.048 0.116
#> SRR1643169 1 0.3934 0.717 0.836 0.000 0.048 0.116
#> SRR1643170 1 0.3934 0.717 0.836 0.000 0.048 0.116
#> SRR1643171 1 0.3877 0.720 0.840 0.000 0.048 0.112
#> SRR1643172 1 0.3877 0.720 0.840 0.000 0.048 0.112
#> SRR1643173 1 0.3877 0.720 0.840 0.000 0.048 0.112
#> SRR1643174 1 0.3877 0.720 0.840 0.000 0.048 0.112
#> SRR1643175 1 0.2915 0.748 0.892 0.000 0.028 0.080
#> SRR1643176 1 0.2915 0.748 0.892 0.000 0.028 0.080
#> SRR1643177 1 0.2915 0.748 0.892 0.000 0.028 0.080
#> SRR1643178 1 0.2915 0.748 0.892 0.000 0.028 0.080
#> SRR1643180 1 0.3934 0.717 0.836 0.000 0.048 0.116
#> SRR1643181 1 0.3934 0.717 0.836 0.000 0.048 0.116
#> SRR1643182 1 0.3934 0.717 0.836 0.000 0.048 0.116
#> SRR1643183 1 0.3877 0.720 0.840 0.000 0.048 0.112
#> SRR1643184 1 0.3877 0.720 0.840 0.000 0.048 0.112
#> SRR1643185 1 0.3877 0.720 0.840 0.000 0.048 0.112
#> SRR1643186 1 0.3877 0.720 0.840 0.000 0.048 0.112
#> SRR1643187 1 0.3787 0.715 0.840 0.000 0.036 0.124
#> SRR1643188 1 0.3787 0.715 0.840 0.000 0.036 0.124
#> SRR1643189 1 0.3787 0.715 0.840 0.000 0.036 0.124
#> SRR1643190 1 0.3787 0.715 0.840 0.000 0.036 0.124
#> SRR1643191 1 0.3934 0.717 0.836 0.000 0.048 0.116
#> SRR1643192 1 0.3934 0.717 0.836 0.000 0.048 0.116
#> SRR1643193 1 0.3934 0.717 0.836 0.000 0.048 0.116
#> SRR1643194 1 0.3934 0.717 0.836 0.000 0.048 0.116
#> SRR1643195 1 0.5228 0.557 0.664 0.000 0.024 0.312
#> SRR1643196 1 0.5228 0.557 0.664 0.000 0.024 0.312
#> SRR1643197 1 0.2908 0.749 0.896 0.000 0.040 0.064
#> SRR1643198 1 0.2908 0.749 0.896 0.000 0.040 0.064
#> SRR1643199 1 0.3934 0.717 0.836 0.000 0.048 0.116
#> SRR1643200 1 0.3934 0.717 0.836 0.000 0.048 0.116
#> SRR1643201 1 0.3842 0.717 0.836 0.000 0.036 0.128
#> SRR1643202 1 0.3842 0.717 0.836 0.000 0.036 0.128
#> SRR1643203 1 0.3764 0.717 0.844 0.000 0.040 0.116
#> SRR1643204 1 0.3764 0.717 0.844 0.000 0.040 0.116
#> SRR1643205 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643206 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643207 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643208 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643209 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643210 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643211 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643212 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643213 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643214 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643215 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643216 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643217 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643218 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643219 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643220 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643221 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643222 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643223 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643224 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643225 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643226 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643227 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643228 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643229 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643230 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643231 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643232 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643233 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643234 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643235 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643236 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643237 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643238 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643239 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643240 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643241 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643242 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643243 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643245 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643246 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643247 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643248 3 0.1022 0.997 0.032 0.000 0.968 0.000
#> SRR1643249 3 0.2676 0.873 0.012 0.000 0.896 0.092
#> SRR1643250 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643251 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643252 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643253 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643254 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643255 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643256 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643257 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643258 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643259 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643260 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643261 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643262 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643263 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643264 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643266 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643267 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643268 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643269 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643270 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643271 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643272 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643273 1 0.1211 0.776 0.960 0.000 0.000 0.040
#> SRR1643274 1 0.1211 0.776 0.960 0.000 0.000 0.040
#> SRR1643275 1 0.1211 0.776 0.960 0.000 0.000 0.040
#> SRR1643276 1 0.1211 0.776 0.960 0.000 0.000 0.040
#> SRR1643277 1 0.1211 0.776 0.960 0.000 0.000 0.040
#> SRR1643278 1 0.1211 0.776 0.960 0.000 0.000 0.040
#> SRR1643279 1 0.1211 0.776 0.960 0.000 0.000 0.040
#> SRR1643280 1 0.1211 0.776 0.960 0.000 0.000 0.040
#> SRR1643281 1 0.1211 0.776 0.960 0.000 0.000 0.040
#> SRR1643282 1 0.1211 0.776 0.960 0.000 0.000 0.040
#> SRR1643283 1 0.1211 0.776 0.960 0.000 0.000 0.040
#> SRR1643284 1 0.1211 0.776 0.960 0.000 0.000 0.040
#> SRR1643285 1 0.1211 0.776 0.960 0.000 0.000 0.040
#> SRR1643286 1 0.1211 0.776 0.960 0.000 0.000 0.040
#> SRR1643287 1 0.4673 0.590 0.700 0.000 0.008 0.292
#> SRR1643288 1 0.4673 0.590 0.700 0.000 0.008 0.292
#> SRR1643289 1 0.4673 0.590 0.700 0.000 0.008 0.292
#> SRR1643290 1 0.4673 0.590 0.700 0.000 0.008 0.292
#> SRR1643291 1 0.4673 0.590 0.700 0.000 0.008 0.292
#> SRR1643292 1 0.4673 0.590 0.700 0.000 0.008 0.292
#> SRR1643293 1 0.4673 0.590 0.700 0.000 0.008 0.292
#> SRR1643294 1 0.4673 0.590 0.700 0.000 0.008 0.292
#> SRR1643295 1 0.4673 0.590 0.700 0.000 0.008 0.292
#> SRR1643296 1 0.4673 0.590 0.700 0.000 0.008 0.292
#> SRR1643297 1 0.4673 0.590 0.700 0.000 0.008 0.292
#> SRR1643298 1 0.4673 0.590 0.700 0.000 0.008 0.292
#> SRR1643299 1 0.4673 0.590 0.700 0.000 0.008 0.292
#> SRR1643300 1 0.4673 0.590 0.700 0.000 0.008 0.292
#> SRR1643301 1 0.1022 0.777 0.968 0.000 0.000 0.032
#> SRR1643302 1 0.1022 0.777 0.968 0.000 0.000 0.032
#> SRR1643303 1 0.1022 0.777 0.968 0.000 0.000 0.032
#> SRR1643304 1 0.1022 0.777 0.968 0.000 0.000 0.032
#> SRR1643305 1 0.1022 0.777 0.968 0.000 0.000 0.032
#> SRR1643306 1 0.1022 0.777 0.968 0.000 0.000 0.032
#> SRR1643307 1 0.1022 0.777 0.968 0.000 0.000 0.032
#> SRR1643308 1 0.1022 0.777 0.968 0.000 0.000 0.032
#> SRR1643309 1 0.1022 0.777 0.968 0.000 0.000 0.032
#> SRR1643310 1 0.1022 0.777 0.968 0.000 0.000 0.032
#> SRR1643311 1 0.1022 0.777 0.968 0.000 0.000 0.032
#> SRR1643312 1 0.1022 0.777 0.968 0.000 0.000 0.032
#> SRR1643313 1 0.1022 0.777 0.968 0.000 0.000 0.032
#> SRR1643314 1 0.0592 0.780 0.984 0.000 0.016 0.000
#> SRR1643315 1 0.0592 0.780 0.984 0.000 0.016 0.000
#> SRR1643316 1 0.0592 0.780 0.984 0.000 0.016 0.000
#> SRR1643317 1 0.0592 0.780 0.984 0.000 0.016 0.000
#> SRR1643318 1 0.0592 0.780 0.984 0.000 0.016 0.000
#> SRR1643319 1 0.0592 0.780 0.984 0.000 0.016 0.000
#> SRR1643320 1 0.0592 0.780 0.984 0.000 0.016 0.000
#> SRR1643321 1 0.0592 0.780 0.984 0.000 0.016 0.000
#> SRR1643322 1 0.0592 0.780 0.984 0.000 0.016 0.000
#> SRR1643323 1 0.0592 0.780 0.984 0.000 0.016 0.000
#> SRR1643324 1 0.0592 0.780 0.984 0.000 0.016 0.000
#> SRR1643325 1 0.0592 0.780 0.984 0.000 0.016 0.000
#> SRR1643326 1 0.0592 0.780 0.984 0.000 0.016 0.000
#> SRR1643327 1 0.0592 0.780 0.984 0.000 0.016 0.000
#> SRR1643328 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643329 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643330 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643331 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643332 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643333 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643334 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643335 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643336 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643337 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643338 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643339 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643340 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643341 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643342 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643343 1 0.2635 0.762 0.904 0.000 0.020 0.076
#> SRR1643344 1 0.2635 0.762 0.904 0.000 0.020 0.076
#> SRR1643345 1 0.2635 0.762 0.904 0.000 0.020 0.076
#> SRR1643346 1 0.2635 0.762 0.904 0.000 0.020 0.076
#> SRR1643347 1 0.2635 0.762 0.904 0.000 0.020 0.076
#> SRR1643348 1 0.2635 0.762 0.904 0.000 0.020 0.076
#> SRR1643349 1 0.2635 0.762 0.904 0.000 0.020 0.076
#> SRR1643350 1 0.2635 0.762 0.904 0.000 0.020 0.076
#> SRR1643351 1 0.2635 0.762 0.904 0.000 0.020 0.076
#> SRR1643352 1 0.2635 0.762 0.904 0.000 0.020 0.076
#> SRR1643353 1 0.2635 0.762 0.904 0.000 0.020 0.076
#> SRR1643354 1 0.2635 0.762 0.904 0.000 0.020 0.076
#> SRR1643355 1 0.2635 0.762 0.904 0.000 0.020 0.076
#> SRR1643356 1 0.2635 0.762 0.904 0.000 0.020 0.076
#> SRR1643357 1 0.2635 0.762 0.904 0.000 0.020 0.076
#> SRR1643358 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643359 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643360 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643361 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643362 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643363 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643364 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643365 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643366 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643367 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643368 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643369 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643370 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643371 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643372 1 0.5070 0.397 0.580 0.000 0.004 0.416
#> SRR1643373 1 0.5070 0.400 0.580 0.000 0.004 0.416
#> SRR1643374 1 0.5070 0.400 0.580 0.000 0.004 0.416
#> SRR1643375 1 0.5070 0.400 0.580 0.000 0.004 0.416
#> SRR1643376 1 0.5070 0.400 0.580 0.000 0.004 0.416
#> SRR1643377 1 0.5070 0.400 0.580 0.000 0.004 0.416
#> SRR1643378 1 0.5070 0.400 0.580 0.000 0.004 0.416
#> SRR1643379 1 0.5070 0.400 0.580 0.000 0.004 0.416
#> SRR1643380 1 0.5070 0.400 0.580 0.000 0.004 0.416
#> SRR1643381 1 0.5070 0.400 0.580 0.000 0.004 0.416
#> SRR1643382 1 0.5070 0.400 0.580 0.000 0.004 0.416
#> SRR1643383 1 0.5070 0.400 0.580 0.000 0.004 0.416
#> SRR1643384 1 0.5070 0.400 0.580 0.000 0.004 0.416
#> SRR1643385 1 0.5070 0.400 0.580 0.000 0.004 0.416
#> SRR1643386 1 0.5070 0.400 0.580 0.000 0.004 0.416
#> SRR1643387 1 0.5070 0.400 0.580 0.000 0.004 0.416
#> SRR1643388 1 0.5070 0.400 0.580 0.000 0.004 0.416
#> SRR1643389 1 0.5070 0.400 0.580 0.000 0.004 0.416
#> SRR1643390 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643391 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643392 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643393 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643394 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643395 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643396 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643397 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643398 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643399 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643400 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643401 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643402 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643403 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643404 1 0.1022 0.778 0.968 0.000 0.032 0.000
#> SRR1643405 1 0.2313 0.767 0.924 0.000 0.044 0.032
#> SRR1643406 1 0.2313 0.767 0.924 0.000 0.044 0.032
#> SRR1643407 1 0.2313 0.767 0.924 0.000 0.044 0.032
#> SRR1643408 1 0.2313 0.767 0.924 0.000 0.044 0.032
#> SRR1643409 1 0.2313 0.767 0.924 0.000 0.044 0.032
#> SRR1643410 1 0.2313 0.767 0.924 0.000 0.044 0.032
#> SRR1643411 1 0.2313 0.767 0.924 0.000 0.044 0.032
#> SRR1643412 1 0.2313 0.767 0.924 0.000 0.044 0.032
#> SRR1643413 1 0.2313 0.767 0.924 0.000 0.044 0.032
#> SRR1643414 1 0.2313 0.767 0.924 0.000 0.044 0.032
#> SRR1643415 1 0.2313 0.767 0.924 0.000 0.044 0.032
#> SRR1643416 1 0.2313 0.767 0.924 0.000 0.044 0.032
#> SRR1643417 1 0.2313 0.767 0.924 0.000 0.044 0.032
#> SRR1643418 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643419 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643420 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643421 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643422 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643423 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643424 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643425 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643426 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643427 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643428 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643429 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643430 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643431 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643432 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643433 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643434 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643435 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643436 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643437 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643438 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643439 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643440 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643441 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643442 4 0.2714 1.000 0.112 0.000 0.004 0.884
#> SRR1643443 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643444 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643445 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643446 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643447 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643448 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643449 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643450 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643451 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643452 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643453 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643454 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643455 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643456 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643457 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643458 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643459 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643460 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643461 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643462 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643463 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643464 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643466 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643467 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643468 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643469 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643470 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643471 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643472 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643473 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643474 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643475 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643477 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643478 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643479 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643480 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643481 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643482 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643483 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643484 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643485 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643486 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643487 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643488 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643489 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643490 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643491 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643492 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643493 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643494 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643495 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643496 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643497 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643498 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643499 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643500 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643501 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643502 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643503 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643504 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643505 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643506 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643507 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643508 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643509 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643510 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643511 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643512 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643513 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643531 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643532 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643533 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643534 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643535 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643536 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643537 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643538 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643539 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643540 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643541 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643542 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643543 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643544 2 0.0188 0.996 0.000 0.996 0.000 0.004
#> SRR1643514 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643515 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643516 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643517 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643518 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643519 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643520 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643521 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643522 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643523 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643524 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643525 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643526 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643527 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643528 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643529 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643530 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643545 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643546 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643547 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643548 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643549 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643550 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643551 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643552 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643553 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643554 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643555 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643556 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643558 2 0.0000 0.997 0.000 1.000 0.000 0.000
#> SRR1643559 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643560 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643561 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643562 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643563 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643564 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643565 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643566 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643567 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643568 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643569 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643570 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643571 2 0.0469 0.993 0.000 0.988 0.000 0.012
#> SRR1643572 2 0.0469 0.993 0.000 0.988 0.000 0.012
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 5 0.4666 0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643168 5 0.4666 0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643169 5 0.4666 0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643170 5 0.4666 0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643171 5 0.4575 0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643172 5 0.4575 0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643173 5 0.4575 0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643174 5 0.4575 0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643175 1 0.2629 0.6603 0.860 0.000 0.004 0.000 0.136
#> SRR1643176 1 0.2629 0.6603 0.860 0.000 0.004 0.000 0.136
#> SRR1643177 1 0.2629 0.6603 0.860 0.000 0.004 0.000 0.136
#> SRR1643178 1 0.2629 0.6603 0.860 0.000 0.004 0.000 0.136
#> SRR1643180 5 0.4666 0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643181 5 0.4666 0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643182 5 0.4666 0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643183 5 0.4575 0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643184 5 0.4575 0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643185 5 0.4575 0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643186 5 0.4575 0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643187 5 0.4666 0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643188 5 0.4666 0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643189 5 0.4666 0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643190 5 0.4666 0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643191 5 0.4575 0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643192 5 0.4575 0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643193 5 0.4575 0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643194 5 0.4575 0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643195 5 0.5014 0.9211 0.368 0.000 0.000 0.040 0.592
#> SRR1643196 5 0.5014 0.9211 0.368 0.000 0.000 0.040 0.592
#> SRR1643197 1 0.2984 0.6678 0.856 0.000 0.004 0.016 0.124
#> SRR1643198 1 0.2984 0.6678 0.856 0.000 0.004 0.016 0.124
#> SRR1643199 5 0.4666 0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643200 5 0.4666 0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643201 5 0.4666 0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643202 5 0.4666 0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643203 5 0.4666 0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643204 5 0.4666 0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643205 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643206 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643207 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643208 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643209 3 0.0912 0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643210 3 0.0912 0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643211 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643212 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643213 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643214 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643215 3 0.0912 0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643216 3 0.0912 0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643217 3 0.0912 0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643218 3 0.0912 0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643219 3 0.0912 0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643220 3 0.0912 0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643221 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643222 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643223 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643224 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643225 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643226 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643227 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643228 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643229 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643230 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643231 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643232 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643233 3 0.0912 0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643234 3 0.0912 0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643235 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643236 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643237 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643238 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643239 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643240 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643241 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643242 3 0.0912 0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643243 3 0.0912 0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643245 3 0.0912 0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643246 3 0.0912 0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643247 3 0.0912 0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643248 3 0.0404 0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643249 5 0.4390 -0.0888 0.000 0.000 0.428 0.004 0.568
#> SRR1643250 4 0.4649 0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643251 4 0.4649 0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643252 4 0.4649 0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643253 4 0.4649 0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643254 4 0.4649 0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643255 4 0.4649 0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643256 4 0.4649 0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643257 4 0.4649 0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643258 4 0.4649 0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643259 4 0.4649 0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643260 4 0.4649 0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643261 4 0.4649 0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643262 4 0.5113 0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643263 4 0.5113 0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643264 4 0.5113 0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643266 4 0.5113 0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643267 4 0.5113 0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643268 4 0.5113 0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643269 4 0.5113 0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643270 4 0.5113 0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643271 4 0.5113 0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643272 4 0.5113 0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643273 1 0.2672 0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643274 1 0.2672 0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643275 1 0.2672 0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643276 1 0.2672 0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643277 1 0.2672 0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643278 1 0.2672 0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643279 1 0.2672 0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643280 1 0.2672 0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643281 1 0.2672 0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643282 1 0.2672 0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643283 1 0.2672 0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643284 1 0.2672 0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643285 1 0.2672 0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643286 1 0.2672 0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643287 1 0.5749 0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643288 1 0.5749 0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643289 1 0.5749 0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643290 1 0.5749 0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643291 1 0.5749 0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643292 1 0.5749 0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643293 1 0.5749 0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643294 1 0.5749 0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643295 1 0.5749 0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643296 1 0.5749 0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643297 1 0.5749 0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643298 1 0.5749 0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643299 1 0.5749 0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643300 1 0.5749 0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643301 1 0.1661 0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643302 1 0.1661 0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643303 1 0.1661 0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643304 1 0.1661 0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643305 1 0.1661 0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643306 1 0.1661 0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643307 1 0.1661 0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643308 1 0.1661 0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643309 1 0.1661 0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643310 1 0.1661 0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643311 1 0.1661 0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643312 1 0.1661 0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643313 1 0.1661 0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643314 1 0.1461 0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643315 1 0.1461 0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643316 1 0.1461 0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643317 1 0.1461 0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643318 1 0.1461 0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643319 1 0.1461 0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643320 1 0.1461 0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643321 1 0.1461 0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643322 1 0.1461 0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643323 1 0.1461 0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643324 1 0.1461 0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643325 1 0.1461 0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643326 1 0.1461 0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643327 1 0.1461 0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643328 1 0.1498 0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643329 1 0.1498 0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643330 1 0.1498 0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643331 1 0.1498 0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643332 1 0.1498 0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643333 1 0.1498 0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643334 1 0.1498 0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643335 1 0.1498 0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643336 1 0.1498 0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643337 1 0.1498 0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643338 1 0.1498 0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643339 1 0.1498 0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643340 1 0.1498 0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643341 1 0.1498 0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643342 1 0.1498 0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643343 1 0.4651 0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643344 1 0.4651 0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643345 1 0.4651 0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643346 1 0.4651 0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643347 1 0.4651 0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643348 1 0.4651 0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643349 1 0.4651 0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643350 1 0.4651 0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643351 1 0.4651 0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643352 1 0.4651 0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643353 1 0.4651 0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643354 1 0.4651 0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643355 1 0.4651 0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643356 1 0.4651 0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643357 1 0.4651 0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643358 4 0.4789 0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643359 4 0.4789 0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643360 4 0.4789 0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643361 4 0.4789 0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643362 4 0.4789 0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643363 4 0.4789 0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643364 4 0.4789 0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643365 4 0.4789 0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643366 4 0.4789 0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643367 4 0.4789 0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643368 4 0.4789 0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643369 4 0.4789 0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643370 4 0.4789 0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643371 4 0.4789 0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643372 4 0.4789 0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643373 4 0.5102 0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643374 4 0.5102 0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643375 4 0.5102 0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643376 4 0.5102 0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643377 4 0.5102 0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643378 4 0.5102 0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643379 4 0.5102 0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643380 4 0.5102 0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643381 4 0.5102 0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643382 4 0.5102 0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643383 4 0.5102 0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643384 4 0.5102 0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643385 4 0.5102 0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643386 4 0.5102 0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643387 4 0.5102 0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643388 4 0.5102 0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643389 4 0.5102 0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643390 1 0.1630 0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643391 1 0.1630 0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643392 1 0.1630 0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643393 1 0.1630 0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643394 1 0.1630 0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643395 1 0.1630 0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643396 1 0.1630 0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643397 1 0.1630 0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643398 1 0.1630 0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643399 1 0.1630 0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643400 1 0.1630 0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643401 1 0.1630 0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643402 1 0.1630 0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643403 1 0.1630 0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643404 1 0.1630 0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643405 1 0.3265 0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643406 1 0.3265 0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643407 1 0.3265 0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643408 1 0.3265 0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643409 1 0.3265 0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643410 1 0.3265 0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643411 1 0.3265 0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643412 1 0.3265 0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643413 1 0.3265 0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643414 1 0.3265 0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643415 1 0.3265 0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643416 1 0.3265 0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643417 1 0.3265 0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643418 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643419 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643420 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643421 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643422 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643423 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643424 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643425 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643426 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643427 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643428 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643429 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643430 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643431 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643432 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643433 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643434 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643435 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643436 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643437 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643438 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643439 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643440 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643441 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643442 4 0.2701 0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643443 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643444 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643445 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643446 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643447 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643448 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643449 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643450 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643451 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643452 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643453 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643454 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643455 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643456 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643457 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643458 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643459 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643460 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643461 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643462 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643463 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643464 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643466 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643467 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643468 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643469 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643470 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643471 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643472 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643473 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643474 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643475 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643477 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643478 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643479 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643480 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643481 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643482 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643483 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643484 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643485 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643486 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643487 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643488 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643489 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643490 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643491 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643492 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643493 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643494 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643495 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643496 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643497 2 0.0000 0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643498 2 0.0000 0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643499 2 0.0000 0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643500 2 0.0000 0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643501 2 0.0000 0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643502 2 0.0000 0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643503 2 0.0000 0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643504 2 0.0000 0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643505 2 0.0000 0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643506 2 0.0000 0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643507 2 0.0000 0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643508 2 0.0000 0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643509 2 0.0000 0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643510 2 0.0000 0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643511 2 0.0000 0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643512 2 0.0000 0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643513 2 0.0000 0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643531 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643532 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643533 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643534 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643535 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643536 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643537 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643538 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643539 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643540 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643541 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643542 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643543 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643544 2 0.0609 0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643514 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643515 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643516 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643517 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643518 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643519 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643520 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643521 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643522 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643523 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643524 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643525 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643526 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643527 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643528 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643529 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643530 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643545 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643546 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643547 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643548 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643549 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643550 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643551 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643552 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643553 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643554 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643555 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643556 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643558 2 0.0162 0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643559 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643560 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643561 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643562 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643563 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643564 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643565 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643566 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643567 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643568 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643569 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643570 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643571 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643572 2 0.1197 0.9721 0.000 0.952 0.000 0.000 0.048
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643168 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643169 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643170 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643171 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643172 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643173 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643174 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643175 1 0.4134 0.519 0.708 0.000 0.000 0.052 0.000 0.240
#> SRR1643176 1 0.4134 0.519 0.708 0.000 0.000 0.052 0.000 0.240
#> SRR1643177 1 0.4134 0.519 0.708 0.000 0.000 0.052 0.000 0.240
#> SRR1643178 1 0.4134 0.519 0.708 0.000 0.000 0.052 0.000 0.240
#> SRR1643180 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643181 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643182 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643183 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643184 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643185 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643186 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643187 6 0.3342 0.971 0.228 0.000 0.000 0.012 0.000 0.760
#> SRR1643188 6 0.3342 0.971 0.228 0.000 0.000 0.012 0.000 0.760
#> SRR1643189 6 0.3342 0.971 0.228 0.000 0.000 0.012 0.000 0.760
#> SRR1643190 6 0.3342 0.971 0.228 0.000 0.000 0.012 0.000 0.760
#> SRR1643191 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643192 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643193 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643194 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643195 6 0.3248 0.977 0.224 0.000 0.000 0.004 0.004 0.768
#> SRR1643196 6 0.3248 0.977 0.224 0.000 0.000 0.004 0.004 0.768
#> SRR1643197 1 0.3588 0.602 0.776 0.000 0.000 0.044 0.000 0.180
#> SRR1643198 1 0.3588 0.602 0.776 0.000 0.000 0.044 0.000 0.180
#> SRR1643199 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643200 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643201 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643202 6 0.3136 0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643203 6 0.3342 0.971 0.228 0.000 0.000 0.012 0.000 0.760
#> SRR1643204 6 0.3342 0.971 0.228 0.000 0.000 0.012 0.000 0.760
#> SRR1643205 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643206 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643207 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643208 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643209 3 0.1370 0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643210 3 0.1370 0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643211 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643212 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643213 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643214 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643215 3 0.1370 0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643216 3 0.1370 0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643217 3 0.1370 0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643218 3 0.1370 0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643219 3 0.1370 0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643220 3 0.1370 0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643221 3 0.0146 0.985 0.004 0.000 0.996 0.000 0.000 0.000
#> SRR1643222 3 0.0146 0.985 0.004 0.000 0.996 0.000 0.000 0.000
#> SRR1643223 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643224 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643225 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643226 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643227 3 0.0291 0.984 0.004 0.000 0.992 0.000 0.000 0.004
#> SRR1643228 3 0.0291 0.984 0.004 0.000 0.992 0.000 0.000 0.004
#> SRR1643229 3 0.0291 0.984 0.004 0.000 0.992 0.000 0.000 0.004
#> SRR1643230 3 0.0146 0.985 0.004 0.000 0.996 0.000 0.000 0.000
#> SRR1643231 3 0.0767 0.979 0.004 0.000 0.976 0.008 0.000 0.012
#> SRR1643232 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643233 3 0.1370 0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643234 3 0.1370 0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643235 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643236 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643237 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643238 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643239 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643240 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643241 3 0.0291 0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643242 3 0.1693 0.967 0.004 0.000 0.932 0.020 0.000 0.044
#> SRR1643243 3 0.1370 0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643245 3 0.1370 0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643246 3 0.1370 0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643247 3 0.1370 0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643248 3 0.0291 0.984 0.004 0.000 0.992 0.000 0.000 0.004
#> SRR1643249 6 0.3271 0.507 0.000 0.000 0.232 0.008 0.000 0.760
#> SRR1643250 4 0.6312 0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643251 4 0.6312 0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643252 4 0.6312 0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643253 4 0.6312 0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643254 4 0.6312 0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643255 4 0.6312 0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643256 4 0.6312 0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643257 4 0.6312 0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643258 4 0.6312 0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643259 4 0.6312 0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643260 4 0.6312 0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643261 4 0.6312 0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643262 4 0.6250 0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643263 4 0.6250 0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643264 4 0.6250 0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643266 4 0.6250 0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643267 4 0.6250 0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643268 4 0.6250 0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643269 4 0.6250 0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643270 4 0.6250 0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643271 4 0.6250 0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643272 4 0.6250 0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643273 1 0.4447 0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643274 1 0.4447 0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643275 1 0.4447 0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643276 1 0.4447 0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643277 1 0.4447 0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643278 1 0.4447 0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643279 1 0.4447 0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643280 1 0.4447 0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643281 1 0.4447 0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643282 1 0.4447 0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643283 1 0.4447 0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643284 1 0.4447 0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643285 1 0.4447 0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643286 1 0.4447 0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643287 4 0.6769 -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643288 4 0.6769 -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643289 4 0.6769 -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643290 4 0.6769 -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643291 4 0.6769 -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643292 4 0.6769 -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643293 4 0.6769 -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643294 4 0.6769 -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643295 4 0.6769 -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643296 4 0.6769 -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643297 4 0.6769 -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643298 4 0.6769 -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643299 4 0.6769 -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643300 4 0.6769 -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643301 1 0.2573 0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643302 1 0.2573 0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643303 1 0.2573 0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643304 1 0.2573 0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643305 1 0.2573 0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643306 1 0.2573 0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643307 1 0.2573 0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643308 1 0.2573 0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643309 1 0.2573 0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643310 1 0.2573 0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643311 1 0.2573 0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643312 1 0.2573 0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643313 1 0.2573 0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643314 1 0.1950 0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643315 1 0.1950 0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643316 1 0.1950 0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643317 1 0.1950 0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643318 1 0.1950 0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643319 1 0.1950 0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643320 1 0.1950 0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643321 1 0.1950 0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643322 1 0.1950 0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643323 1 0.1950 0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643324 1 0.1950 0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643325 1 0.1950 0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643326 1 0.1950 0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643327 1 0.1950 0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643328 1 0.1518 0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643329 1 0.1518 0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643330 1 0.1518 0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643331 1 0.1518 0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643332 1 0.1518 0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643333 1 0.1518 0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643334 1 0.1518 0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643335 1 0.1518 0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643336 1 0.1518 0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643337 1 0.1518 0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643338 1 0.1518 0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643339 1 0.1518 0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643340 1 0.1518 0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643341 1 0.1518 0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643342 1 0.1518 0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643343 1 0.5310 0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643344 1 0.5310 0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643345 1 0.5310 0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643346 1 0.5310 0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643347 1 0.5310 0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643348 1 0.5310 0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643349 1 0.5310 0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643350 1 0.5310 0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643351 1 0.5310 0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643352 1 0.5310 0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643353 1 0.5310 0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643354 1 0.5310 0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643355 1 0.5310 0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643356 1 0.5310 0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643357 1 0.5310 0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643358 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643359 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643360 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643361 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643362 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643363 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643364 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643365 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643366 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643367 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643368 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643369 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643370 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643371 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643372 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643373 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643374 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643375 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643376 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643377 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643378 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643379 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643380 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643381 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643382 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643383 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643384 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643385 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643386 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643387 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643388 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643389 4 0.6230 0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643390 1 0.1262 0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643391 1 0.1262 0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643392 1 0.1262 0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643393 1 0.1262 0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643394 1 0.1262 0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643395 1 0.1262 0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643396 1 0.1262 0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643397 1 0.1262 0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643398 1 0.1262 0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643399 1 0.1262 0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643400 1 0.1262 0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643401 1 0.1262 0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643402 1 0.1262 0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643403 1 0.1262 0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643404 1 0.1262 0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643405 1 0.3048 0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643406 1 0.3048 0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643407 1 0.3048 0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643408 1 0.3048 0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643409 1 0.3048 0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643410 1 0.3048 0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643411 1 0.3048 0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643412 1 0.3048 0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643413 1 0.3048 0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643414 1 0.3048 0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643415 1 0.3048 0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643416 1 0.3048 0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643417 1 0.3048 0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643418 5 0.0146 0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643419 5 0.0146 0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643420 5 0.0146 0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643421 5 0.0146 0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643422 5 0.0146 0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643423 5 0.0146 0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643424 5 0.0146 0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643425 5 0.0146 0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643426 5 0.0146 0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643427 5 0.0146 0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643428 5 0.0146 0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643429 5 0.0146 0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643430 5 0.0000 0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643431 5 0.0000 0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643432 5 0.0000 0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643433 5 0.0000 0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643434 5 0.0000 0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643435 5 0.0000 0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643436 5 0.0000 0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643437 5 0.0000 0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643438 5 0.0000 0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643439 5 0.0000 0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643440 5 0.0000 0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643441 5 0.0000 0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643442 5 0.0000 0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643443 2 0.1461 0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643444 2 0.1461 0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643445 2 0.1461 0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643446 2 0.1461 0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643447 2 0.1461 0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643448 2 0.1461 0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643449 2 0.1461 0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643450 2 0.1461 0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643451 2 0.1461 0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643452 2 0.1461 0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643453 2 0.1461 0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643454 2 0.1461 0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643455 2 0.1461 0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643456 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643457 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643458 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643459 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643460 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643461 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643462 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643463 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643464 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643466 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643467 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643468 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643469 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643470 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643471 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643472 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643473 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643474 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643475 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643477 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643478 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643479 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643480 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643481 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643482 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643483 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643484 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643485 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643486 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643487 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643488 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643489 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643490 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643491 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643492 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643493 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643494 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643495 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643496 2 0.0146 0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643497 2 0.0291 0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643498 2 0.0291 0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643499 2 0.0291 0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643500 2 0.0291 0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643501 2 0.0291 0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643502 2 0.0291 0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643503 2 0.0291 0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643504 2 0.0291 0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643505 2 0.0405 0.971 0.000 0.988 0.000 0.008 0.000 0.004
#> SRR1643506 2 0.0291 0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643507 2 0.0291 0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643508 2 0.0291 0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643509 2 0.0291 0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643510 2 0.0291 0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643511 2 0.0291 0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643512 2 0.0291 0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643513 2 0.0291 0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643531 2 0.1320 0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643532 2 0.1320 0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643533 2 0.1320 0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643534 2 0.1320 0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643535 2 0.1320 0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643536 2 0.1320 0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643537 2 0.1320 0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643538 2 0.1320 0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643539 2 0.1320 0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643540 2 0.1320 0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643541 2 0.1320 0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643542 2 0.1320 0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643543 2 0.1320 0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643544 2 0.1320 0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643514 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643515 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643516 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643517 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643518 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643519 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643520 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643521 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643522 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643523 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643524 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643525 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643526 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643527 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643528 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643529 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643530 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643545 2 0.0146 0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643546 2 0.0146 0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643547 2 0.0146 0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643548 2 0.0146 0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643549 2 0.0146 0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643550 2 0.0146 0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643551 2 0.0146 0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643552 2 0.0146 0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643553 2 0.0146 0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643554 2 0.0146 0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643555 2 0.0146 0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643556 2 0.0146 0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643558 2 0.0146 0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643559 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643560 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643561 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643562 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643563 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643564 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643565 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643566 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643567 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643568 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643569 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643570 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643571 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643572 2 0.1867 0.950 0.000 0.916 0.000 0.064 0.000 0.020
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["ATC", "pam"]
# you can also extract it by
# res = res_list["ATC:pam"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'ATC' method.
#> Subgroups are detected by 'pam' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 6.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.4350 0.566 0.566
#> 3 3 0.765 0.834 0.885 0.3777 0.876 0.781
#> 4 4 0.990 0.962 0.975 0.1995 0.832 0.622
#> 5 5 0.914 0.939 0.943 0.0577 0.962 0.863
#> 6 6 0.941 0.952 0.967 0.0605 0.950 0.792
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 6
#> attr(,"optional")
#> [1] 2 4 5
There is also optional best \(k\) = 2 4 5 that is worth to check.
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.0000 0.685 1.000 0 0.000
#> SRR1643168 1 0.0000 0.685 1.000 0 0.000
#> SRR1643169 1 0.0000 0.685 1.000 0 0.000
#> SRR1643170 1 0.0000 0.685 1.000 0 0.000
#> SRR1643171 1 0.0000 0.685 1.000 0 0.000
#> SRR1643172 1 0.0000 0.685 1.000 0 0.000
#> SRR1643173 1 0.0000 0.685 1.000 0 0.000
#> SRR1643174 1 0.0000 0.685 1.000 0 0.000
#> SRR1643175 1 0.4605 0.709 0.796 0 0.204
#> SRR1643176 1 0.4750 0.711 0.784 0 0.216
#> SRR1643177 1 0.4750 0.716 0.784 0 0.216
#> SRR1643178 1 0.4605 0.706 0.796 0 0.204
#> SRR1643180 1 0.0000 0.685 1.000 0 0.000
#> SRR1643181 1 0.0000 0.685 1.000 0 0.000
#> SRR1643182 1 0.0000 0.685 1.000 0 0.000
#> SRR1643183 1 0.0000 0.685 1.000 0 0.000
#> SRR1643184 1 0.0000 0.685 1.000 0 0.000
#> SRR1643185 1 0.0000 0.685 1.000 0 0.000
#> SRR1643186 1 0.0000 0.685 1.000 0 0.000
#> SRR1643187 1 0.1031 0.691 0.976 0 0.024
#> SRR1643188 1 0.1031 0.691 0.976 0 0.024
#> SRR1643189 1 0.1031 0.691 0.976 0 0.024
#> SRR1643190 1 0.1031 0.691 0.976 0 0.024
#> SRR1643191 1 0.0000 0.685 1.000 0 0.000
#> SRR1643192 1 0.0000 0.685 1.000 0 0.000
#> SRR1643193 1 0.0000 0.685 1.000 0 0.000
#> SRR1643194 1 0.0000 0.685 1.000 0 0.000
#> SRR1643195 1 0.6095 0.743 0.608 0 0.392
#> SRR1643196 1 0.6095 0.743 0.608 0 0.392
#> SRR1643197 1 0.0000 0.685 1.000 0 0.000
#> SRR1643198 1 0.0000 0.685 1.000 0 0.000
#> SRR1643199 1 0.0000 0.685 1.000 0 0.000
#> SRR1643200 1 0.0000 0.685 1.000 0 0.000
#> SRR1643201 1 0.2625 0.700 0.916 0 0.084
#> SRR1643202 1 0.2261 0.698 0.932 0 0.068
#> SRR1643203 1 0.0000 0.685 1.000 0 0.000
#> SRR1643204 1 0.0000 0.685 1.000 0 0.000
#> SRR1643205 3 0.6095 0.996 0.392 0 0.608
#> SRR1643206 3 0.6095 0.996 0.392 0 0.608
#> SRR1643207 3 0.6095 0.996 0.392 0 0.608
#> SRR1643208 3 0.6095 0.996 0.392 0 0.608
#> SRR1643209 3 0.6095 0.996 0.392 0 0.608
#> SRR1643210 3 0.6095 0.996 0.392 0 0.608
#> SRR1643211 3 0.6095 0.996 0.392 0 0.608
#> SRR1643212 3 0.6095 0.996 0.392 0 0.608
#> SRR1643213 3 0.6095 0.996 0.392 0 0.608
#> SRR1643214 3 0.6095 0.996 0.392 0 0.608
#> SRR1643215 3 0.6095 0.996 0.392 0 0.608
#> SRR1643216 3 0.6095 0.996 0.392 0 0.608
#> SRR1643217 3 0.6095 0.996 0.392 0 0.608
#> SRR1643218 3 0.6095 0.996 0.392 0 0.608
#> SRR1643219 3 0.6095 0.996 0.392 0 0.608
#> SRR1643220 3 0.6095 0.996 0.392 0 0.608
#> SRR1643221 3 0.6095 0.996 0.392 0 0.608
#> SRR1643222 3 0.6095 0.996 0.392 0 0.608
#> SRR1643223 3 0.6095 0.996 0.392 0 0.608
#> SRR1643224 3 0.6095 0.996 0.392 0 0.608
#> SRR1643225 3 0.6095 0.996 0.392 0 0.608
#> SRR1643226 3 0.6095 0.996 0.392 0 0.608
#> SRR1643227 3 0.6095 0.996 0.392 0 0.608
#> SRR1643228 3 0.6095 0.996 0.392 0 0.608
#> SRR1643229 3 0.6095 0.996 0.392 0 0.608
#> SRR1643230 3 0.6095 0.996 0.392 0 0.608
#> SRR1643231 3 0.6095 0.996 0.392 0 0.608
#> SRR1643232 3 0.5810 0.920 0.336 0 0.664
#> SRR1643233 3 0.6095 0.996 0.392 0 0.608
#> SRR1643234 3 0.6095 0.996 0.392 0 0.608
#> SRR1643235 3 0.6045 0.982 0.380 0 0.620
#> SRR1643236 3 0.6026 0.977 0.376 0 0.624
#> SRR1643237 3 0.6008 0.972 0.372 0 0.628
#> SRR1643238 3 0.6095 0.996 0.392 0 0.608
#> SRR1643239 3 0.6095 0.996 0.392 0 0.608
#> SRR1643240 3 0.6095 0.996 0.392 0 0.608
#> SRR1643241 3 0.6095 0.996 0.392 0 0.608
#> SRR1643242 3 0.6140 0.980 0.404 0 0.596
#> SRR1643243 3 0.6045 0.982 0.380 0 0.620
#> SRR1643245 3 0.6095 0.996 0.392 0 0.608
#> SRR1643246 3 0.6095 0.996 0.392 0 0.608
#> SRR1643247 3 0.6095 0.996 0.392 0 0.608
#> SRR1643248 3 0.6095 0.996 0.392 0 0.608
#> SRR1643249 1 0.2066 0.652 0.940 0 0.060
#> SRR1643250 1 0.6095 0.743 0.608 0 0.392
#> SRR1643251 1 0.6095 0.743 0.608 0 0.392
#> SRR1643252 1 0.6095 0.743 0.608 0 0.392
#> SRR1643253 1 0.6095 0.743 0.608 0 0.392
#> SRR1643254 1 0.6095 0.743 0.608 0 0.392
#> SRR1643255 1 0.6095 0.743 0.608 0 0.392
#> SRR1643256 1 0.6095 0.743 0.608 0 0.392
#> SRR1643257 1 0.6095 0.743 0.608 0 0.392
#> SRR1643258 1 0.6095 0.743 0.608 0 0.392
#> SRR1643259 1 0.6095 0.743 0.608 0 0.392
#> SRR1643260 1 0.6095 0.743 0.608 0 0.392
#> SRR1643261 1 0.6095 0.743 0.608 0 0.392
#> SRR1643262 1 0.6095 0.743 0.608 0 0.392
#> SRR1643263 1 0.6095 0.743 0.608 0 0.392
#> SRR1643264 1 0.6095 0.743 0.608 0 0.392
#> SRR1643266 1 0.6095 0.743 0.608 0 0.392
#> SRR1643267 1 0.6095 0.743 0.608 0 0.392
#> SRR1643268 1 0.6095 0.743 0.608 0 0.392
#> SRR1643269 1 0.6095 0.743 0.608 0 0.392
#> SRR1643270 1 0.6095 0.743 0.608 0 0.392
#> SRR1643271 1 0.6095 0.743 0.608 0 0.392
#> SRR1643272 1 0.6095 0.743 0.608 0 0.392
#> SRR1643273 1 0.0000 0.685 1.000 0 0.000
#> SRR1643274 1 0.0000 0.685 1.000 0 0.000
#> SRR1643275 1 0.0000 0.685 1.000 0 0.000
#> SRR1643276 1 0.0000 0.685 1.000 0 0.000
#> SRR1643277 1 0.0000 0.685 1.000 0 0.000
#> SRR1643278 1 0.0000 0.685 1.000 0 0.000
#> SRR1643279 1 0.0000 0.685 1.000 0 0.000
#> SRR1643280 1 0.0000 0.685 1.000 0 0.000
#> SRR1643281 1 0.0000 0.685 1.000 0 0.000
#> SRR1643282 1 0.0000 0.685 1.000 0 0.000
#> SRR1643283 1 0.0000 0.685 1.000 0 0.000
#> SRR1643284 1 0.0000 0.685 1.000 0 0.000
#> SRR1643285 1 0.0000 0.685 1.000 0 0.000
#> SRR1643286 1 0.0000 0.685 1.000 0 0.000
#> SRR1643287 1 0.6095 0.743 0.608 0 0.392
#> SRR1643288 1 0.6095 0.743 0.608 0 0.392
#> SRR1643289 1 0.6095 0.743 0.608 0 0.392
#> SRR1643290 1 0.6095 0.743 0.608 0 0.392
#> SRR1643291 1 0.6095 0.743 0.608 0 0.392
#> SRR1643292 1 0.6095 0.743 0.608 0 0.392
#> SRR1643293 1 0.6095 0.743 0.608 0 0.392
#> SRR1643294 1 0.6095 0.743 0.608 0 0.392
#> SRR1643295 1 0.6095 0.743 0.608 0 0.392
#> SRR1643296 1 0.6095 0.743 0.608 0 0.392
#> SRR1643297 1 0.6095 0.743 0.608 0 0.392
#> SRR1643298 1 0.6095 0.743 0.608 0 0.392
#> SRR1643299 1 0.6095 0.743 0.608 0 0.392
#> SRR1643300 1 0.6095 0.743 0.608 0 0.392
#> SRR1643301 1 0.0000 0.685 1.000 0 0.000
#> SRR1643302 1 0.0000 0.685 1.000 0 0.000
#> SRR1643303 1 0.1031 0.691 0.976 0 0.024
#> SRR1643304 1 0.0237 0.686 0.996 0 0.004
#> SRR1643305 1 0.0424 0.687 0.992 0 0.008
#> SRR1643306 1 0.1529 0.693 0.960 0 0.040
#> SRR1643307 1 0.0000 0.685 1.000 0 0.000
#> SRR1643308 1 0.0000 0.685 1.000 0 0.000
#> SRR1643309 1 0.0424 0.687 0.992 0 0.008
#> SRR1643310 1 0.3038 0.701 0.896 0 0.104
#> SRR1643311 1 0.1529 0.693 0.960 0 0.040
#> SRR1643312 1 0.0592 0.688 0.988 0 0.012
#> SRR1643313 1 0.1031 0.691 0.976 0 0.024
#> SRR1643314 1 0.0000 0.685 1.000 0 0.000
#> SRR1643315 1 0.0000 0.685 1.000 0 0.000
#> SRR1643316 1 0.0000 0.685 1.000 0 0.000
#> SRR1643317 1 0.0000 0.685 1.000 0 0.000
#> SRR1643318 1 0.0000 0.685 1.000 0 0.000
#> SRR1643319 1 0.0000 0.685 1.000 0 0.000
#> SRR1643320 1 0.0000 0.685 1.000 0 0.000
#> SRR1643321 1 0.0000 0.685 1.000 0 0.000
#> SRR1643322 1 0.0000 0.685 1.000 0 0.000
#> SRR1643323 1 0.0000 0.685 1.000 0 0.000
#> SRR1643324 1 0.0000 0.685 1.000 0 0.000
#> SRR1643325 1 0.0000 0.685 1.000 0 0.000
#> SRR1643326 1 0.0000 0.685 1.000 0 0.000
#> SRR1643327 1 0.0000 0.685 1.000 0 0.000
#> SRR1643328 1 0.0000 0.685 1.000 0 0.000
#> SRR1643329 1 0.0000 0.685 1.000 0 0.000
#> SRR1643330 1 0.0000 0.685 1.000 0 0.000
#> SRR1643331 1 0.0000 0.685 1.000 0 0.000
#> SRR1643332 1 0.0000 0.685 1.000 0 0.000
#> SRR1643333 1 0.0000 0.685 1.000 0 0.000
#> SRR1643334 1 0.0000 0.685 1.000 0 0.000
#> SRR1643335 1 0.0000 0.685 1.000 0 0.000
#> SRR1643336 1 0.0000 0.685 1.000 0 0.000
#> SRR1643337 1 0.0000 0.685 1.000 0 0.000
#> SRR1643338 1 0.0000 0.685 1.000 0 0.000
#> SRR1643339 1 0.0000 0.685 1.000 0 0.000
#> SRR1643340 1 0.0000 0.685 1.000 0 0.000
#> SRR1643341 1 0.0000 0.685 1.000 0 0.000
#> SRR1643342 1 0.0000 0.685 1.000 0 0.000
#> SRR1643343 1 0.6095 0.743 0.608 0 0.392
#> SRR1643344 1 0.6095 0.743 0.608 0 0.392
#> SRR1643345 1 0.6095 0.743 0.608 0 0.392
#> SRR1643346 1 0.6095 0.743 0.608 0 0.392
#> SRR1643347 1 0.6095 0.743 0.608 0 0.392
#> SRR1643348 1 0.6095 0.743 0.608 0 0.392
#> SRR1643349 1 0.6095 0.743 0.608 0 0.392
#> SRR1643350 1 0.6095 0.743 0.608 0 0.392
#> SRR1643351 1 0.6095 0.743 0.608 0 0.392
#> SRR1643352 1 0.6095 0.743 0.608 0 0.392
#> SRR1643353 1 0.6095 0.743 0.608 0 0.392
#> SRR1643354 1 0.6095 0.743 0.608 0 0.392
#> SRR1643355 1 0.6095 0.743 0.608 0 0.392
#> SRR1643356 1 0.6095 0.743 0.608 0 0.392
#> SRR1643357 1 0.6095 0.743 0.608 0 0.392
#> SRR1643358 1 0.6095 0.743 0.608 0 0.392
#> SRR1643359 1 0.6095 0.743 0.608 0 0.392
#> SRR1643360 1 0.6095 0.743 0.608 0 0.392
#> SRR1643361 1 0.6095 0.743 0.608 0 0.392
#> SRR1643362 1 0.6095 0.743 0.608 0 0.392
#> SRR1643363 1 0.6095 0.743 0.608 0 0.392
#> SRR1643364 1 0.6095 0.743 0.608 0 0.392
#> SRR1643365 1 0.6095 0.743 0.608 0 0.392
#> SRR1643366 1 0.6095 0.743 0.608 0 0.392
#> SRR1643367 1 0.6095 0.743 0.608 0 0.392
#> SRR1643368 1 0.6095 0.743 0.608 0 0.392
#> SRR1643369 1 0.6095 0.743 0.608 0 0.392
#> SRR1643370 1 0.6095 0.743 0.608 0 0.392
#> SRR1643371 1 0.6095 0.743 0.608 0 0.392
#> SRR1643372 1 0.6095 0.743 0.608 0 0.392
#> SRR1643373 1 0.6095 0.743 0.608 0 0.392
#> SRR1643374 1 0.6095 0.743 0.608 0 0.392
#> SRR1643375 1 0.6095 0.743 0.608 0 0.392
#> SRR1643376 1 0.6095 0.743 0.608 0 0.392
#> SRR1643377 1 0.6095 0.743 0.608 0 0.392
#> SRR1643378 1 0.6095 0.743 0.608 0 0.392
#> SRR1643379 1 0.6095 0.743 0.608 0 0.392
#> SRR1643380 1 0.6095 0.743 0.608 0 0.392
#> SRR1643381 1 0.6095 0.743 0.608 0 0.392
#> SRR1643382 1 0.6095 0.743 0.608 0 0.392
#> SRR1643383 1 0.6095 0.743 0.608 0 0.392
#> SRR1643384 1 0.6095 0.743 0.608 0 0.392
#> SRR1643385 1 0.6095 0.743 0.608 0 0.392
#> SRR1643386 1 0.6095 0.743 0.608 0 0.392
#> SRR1643387 1 0.6095 0.743 0.608 0 0.392
#> SRR1643388 1 0.6095 0.743 0.608 0 0.392
#> SRR1643389 1 0.6095 0.743 0.608 0 0.392
#> SRR1643390 1 0.0000 0.685 1.000 0 0.000
#> SRR1643391 1 0.0000 0.685 1.000 0 0.000
#> SRR1643392 1 0.0000 0.685 1.000 0 0.000
#> SRR1643393 1 0.0000 0.685 1.000 0 0.000
#> SRR1643394 1 0.0000 0.685 1.000 0 0.000
#> SRR1643395 1 0.0000 0.685 1.000 0 0.000
#> SRR1643396 1 0.0000 0.685 1.000 0 0.000
#> SRR1643397 1 0.0000 0.685 1.000 0 0.000
#> SRR1643398 1 0.0000 0.685 1.000 0 0.000
#> SRR1643399 1 0.0000 0.685 1.000 0 0.000
#> SRR1643400 1 0.0000 0.685 1.000 0 0.000
#> SRR1643401 1 0.0000 0.685 1.000 0 0.000
#> SRR1643402 1 0.0000 0.685 1.000 0 0.000
#> SRR1643403 1 0.0000 0.685 1.000 0 0.000
#> SRR1643404 1 0.0000 0.685 1.000 0 0.000
#> SRR1643405 1 0.0000 0.685 1.000 0 0.000
#> SRR1643406 1 0.0000 0.685 1.000 0 0.000
#> SRR1643407 1 0.0000 0.685 1.000 0 0.000
#> SRR1643408 1 0.0000 0.685 1.000 0 0.000
#> SRR1643409 1 0.0000 0.685 1.000 0 0.000
#> SRR1643410 1 0.0747 0.663 0.984 0 0.016
#> SRR1643411 1 0.0000 0.685 1.000 0 0.000
#> SRR1643412 1 0.1031 0.650 0.976 0 0.024
#> SRR1643413 1 0.0000 0.685 1.000 0 0.000
#> SRR1643414 1 0.0000 0.685 1.000 0 0.000
#> SRR1643415 1 0.0000 0.685 1.000 0 0.000
#> SRR1643416 1 0.0000 0.685 1.000 0 0.000
#> SRR1643417 1 0.0000 0.685 1.000 0 0.000
#> SRR1643418 1 0.6095 0.743 0.608 0 0.392
#> SRR1643419 1 0.6095 0.743 0.608 0 0.392
#> SRR1643420 1 0.6095 0.743 0.608 0 0.392
#> SRR1643421 1 0.6095 0.743 0.608 0 0.392
#> SRR1643422 1 0.6095 0.743 0.608 0 0.392
#> SRR1643423 1 0.6095 0.743 0.608 0 0.392
#> SRR1643424 1 0.6095 0.743 0.608 0 0.392
#> SRR1643425 1 0.6095 0.743 0.608 0 0.392
#> SRR1643426 1 0.6095 0.743 0.608 0 0.392
#> SRR1643427 1 0.6095 0.743 0.608 0 0.392
#> SRR1643428 1 0.6095 0.743 0.608 0 0.392
#> SRR1643429 1 0.6095 0.743 0.608 0 0.392
#> SRR1643430 1 0.6095 0.743 0.608 0 0.392
#> SRR1643431 1 0.6095 0.743 0.608 0 0.392
#> SRR1643432 1 0.6095 0.743 0.608 0 0.392
#> SRR1643433 1 0.6095 0.743 0.608 0 0.392
#> SRR1643434 1 0.6095 0.743 0.608 0 0.392
#> SRR1643435 1 0.6095 0.743 0.608 0 0.392
#> SRR1643436 1 0.6095 0.743 0.608 0 0.392
#> SRR1643437 1 0.6095 0.743 0.608 0 0.392
#> SRR1643438 1 0.6095 0.743 0.608 0 0.392
#> SRR1643439 1 0.6095 0.743 0.608 0 0.392
#> SRR1643440 1 0.6095 0.743 0.608 0 0.392
#> SRR1643441 1 0.6095 0.743 0.608 0 0.392
#> SRR1643442 1 0.6095 0.743 0.608 0 0.392
#> SRR1643443 2 0.0000 1.000 0.000 1 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0.000
#> SRR1643505 2 0.0000 1.000 0.000 1 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.0000 0.922 1.000 0 0.000 0.000
#> SRR1643168 1 0.0000 0.922 1.000 0 0.000 0.000
#> SRR1643169 1 0.0000 0.922 1.000 0 0.000 0.000
#> SRR1643170 1 0.0000 0.922 1.000 0 0.000 0.000
#> SRR1643171 1 0.0000 0.922 1.000 0 0.000 0.000
#> SRR1643172 1 0.0000 0.922 1.000 0 0.000 0.000
#> SRR1643173 1 0.0000 0.922 1.000 0 0.000 0.000
#> SRR1643174 1 0.0000 0.922 1.000 0 0.000 0.000
#> SRR1643175 4 0.4134 0.642 0.260 0 0.000 0.740
#> SRR1643176 4 0.3975 0.679 0.240 0 0.000 0.760
#> SRR1643177 4 0.4072 0.671 0.252 0 0.000 0.748
#> SRR1643178 4 0.4164 0.636 0.264 0 0.000 0.736
#> SRR1643180 1 0.0188 0.922 0.996 0 0.000 0.004
#> SRR1643181 1 0.0000 0.922 1.000 0 0.000 0.000
#> SRR1643182 1 0.0000 0.922 1.000 0 0.000 0.000
#> SRR1643183 1 0.0000 0.922 1.000 0 0.000 0.000
#> SRR1643184 1 0.0188 0.922 0.996 0 0.000 0.004
#> SRR1643185 1 0.0188 0.922 0.996 0 0.000 0.004
#> SRR1643186 1 0.0188 0.922 0.996 0 0.000 0.004
#> SRR1643187 1 0.3123 0.826 0.844 0 0.000 0.156
#> SRR1643188 1 0.2814 0.853 0.868 0 0.000 0.132
#> SRR1643189 1 0.3074 0.830 0.848 0 0.000 0.152
#> SRR1643190 1 0.2814 0.853 0.868 0 0.000 0.132
#> SRR1643191 1 0.0000 0.922 1.000 0 0.000 0.000
#> SRR1643192 1 0.0000 0.922 1.000 0 0.000 0.000
#> SRR1643193 1 0.1389 0.921 0.952 0 0.000 0.048
#> SRR1643194 1 0.1389 0.921 0.952 0 0.000 0.048
#> SRR1643195 4 0.1389 0.923 0.048 0 0.000 0.952
#> SRR1643196 4 0.1389 0.923 0.048 0 0.000 0.952
#> SRR1643197 1 0.1716 0.944 0.936 0 0.000 0.064
#> SRR1643198 1 0.2011 0.934 0.920 0 0.000 0.080
#> SRR1643199 1 0.0336 0.923 0.992 0 0.000 0.008
#> SRR1643200 1 0.0336 0.923 0.992 0 0.000 0.008
#> SRR1643201 4 0.4776 0.423 0.376 0 0.000 0.624
#> SRR1643202 4 0.4830 0.379 0.392 0 0.000 0.608
#> SRR1643203 1 0.1118 0.924 0.964 0 0.000 0.036
#> SRR1643204 1 0.1211 0.923 0.960 0 0.000 0.040
#> SRR1643205 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643206 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643207 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643208 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643209 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643210 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643211 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643212 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643213 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643214 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643215 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643216 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643217 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643218 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643219 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643220 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643221 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643222 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643223 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643224 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643225 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643226 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643227 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643228 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643229 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643230 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643231 3 0.0336 0.991 0.008 0 0.992 0.000
#> SRR1643232 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643233 3 0.0707 0.979 0.020 0 0.980 0.000
#> SRR1643234 3 0.0707 0.979 0.020 0 0.980 0.000
#> SRR1643235 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643236 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643237 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643238 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643239 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643240 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643241 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643242 1 0.4564 0.550 0.672 0 0.328 0.000
#> SRR1643243 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643245 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643246 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643247 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643248 3 0.0000 0.999 0.000 0 1.000 0.000
#> SRR1643249 1 0.1936 0.907 0.940 0 0.032 0.028
#> SRR1643250 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643251 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643252 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643253 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643254 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643255 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643256 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643257 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643258 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643259 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643260 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643261 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643262 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643263 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643264 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643266 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643267 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643268 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643269 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643270 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643271 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643272 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643273 1 0.2011 0.937 0.920 0 0.000 0.080
#> SRR1643274 1 0.2081 0.935 0.916 0 0.000 0.084
#> SRR1643275 1 0.2149 0.932 0.912 0 0.000 0.088
#> SRR1643276 1 0.2149 0.932 0.912 0 0.000 0.088
#> SRR1643277 1 0.2149 0.932 0.912 0 0.000 0.088
#> SRR1643278 1 0.1940 0.939 0.924 0 0.000 0.076
#> SRR1643279 1 0.2281 0.927 0.904 0 0.000 0.096
#> SRR1643280 1 0.2281 0.927 0.904 0 0.000 0.096
#> SRR1643281 1 0.2081 0.935 0.916 0 0.000 0.084
#> SRR1643282 1 0.2149 0.933 0.912 0 0.000 0.088
#> SRR1643283 1 0.2216 0.930 0.908 0 0.000 0.092
#> SRR1643284 1 0.2081 0.935 0.916 0 0.000 0.084
#> SRR1643285 1 0.2149 0.932 0.912 0 0.000 0.088
#> SRR1643286 1 0.2149 0.932 0.912 0 0.000 0.088
#> SRR1643287 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643288 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643289 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643290 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643291 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643292 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643293 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643294 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643295 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643296 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643297 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643298 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643299 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643300 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643301 1 0.3688 0.816 0.792 0 0.000 0.208
#> SRR1643302 1 0.2589 0.911 0.884 0 0.000 0.116
#> SRR1643303 1 0.3569 0.831 0.804 0 0.000 0.196
#> SRR1643304 1 0.3569 0.831 0.804 0 0.000 0.196
#> SRR1643305 1 0.4304 0.703 0.716 0 0.000 0.284
#> SRR1643306 1 0.4661 0.579 0.652 0 0.000 0.348
#> SRR1643307 1 0.2921 0.889 0.860 0 0.000 0.140
#> SRR1643308 1 0.3219 0.866 0.836 0 0.000 0.164
#> SRR1643309 1 0.3569 0.830 0.804 0 0.000 0.196
#> SRR1643310 4 0.4933 0.127 0.432 0 0.000 0.568
#> SRR1643311 1 0.4585 0.611 0.668 0 0.000 0.332
#> SRR1643312 1 0.3311 0.858 0.828 0 0.000 0.172
#> SRR1643313 1 0.3688 0.814 0.792 0 0.000 0.208
#> SRR1643314 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643315 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643316 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643317 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643318 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643319 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643320 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643321 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643322 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643323 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643324 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643325 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643326 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643327 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643328 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643329 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643330 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643331 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643332 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643333 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643334 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643335 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643336 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643337 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643338 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643339 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643340 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643341 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643342 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643343 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643344 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643345 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643346 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643347 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643348 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643349 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643350 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643351 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643352 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643353 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643354 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643355 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643356 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643357 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643358 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643359 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643360 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643361 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643362 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643363 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643364 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643365 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643366 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643367 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643368 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643369 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643370 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643371 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643372 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643373 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643374 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643375 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643376 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643377 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643378 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643379 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643380 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643381 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643382 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643383 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643384 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643385 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643386 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643387 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643388 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643389 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643390 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643391 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643392 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643393 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643394 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643395 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643396 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643397 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643398 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643399 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643400 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643401 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643402 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643403 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643404 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643405 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643406 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643407 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643408 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643409 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643410 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643411 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643412 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643413 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643414 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643415 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643416 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643417 1 0.1389 0.951 0.952 0 0.000 0.048
#> SRR1643418 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643419 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643420 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643421 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643422 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643423 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643424 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643425 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643426 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643427 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643428 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643429 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643430 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643431 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643432 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643433 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643434 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643435 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643436 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643437 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643438 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643439 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643440 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643441 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643442 4 0.0000 0.977 0.000 0 0.000 1.000
#> SRR1643443 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643444 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643445 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643446 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643447 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643448 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643449 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643450 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643451 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643452 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643453 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643454 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643455 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643456 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643505 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643506 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643531 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643532 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643533 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643534 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643535 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643536 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643537 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643538 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643539 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643540 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643541 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643542 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643543 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643544 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643514 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643515 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643516 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643517 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643518 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643519 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643520 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643521 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643522 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643523 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643524 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643525 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643526 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643527 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643528 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643529 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643530 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643545 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643546 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643547 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643549 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643550 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643551 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643552 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643553 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643554 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643559 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643560 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643561 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643562 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643563 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643564 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643565 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643566 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643567 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643568 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643569 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643570 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643571 2 0.0000 1.000 0.000 1 0.000 0.000
#> SRR1643572 2 0.0000 1.000 0.000 1 0.000 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643168 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643169 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643170 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643171 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643172 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643173 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643174 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643175 4 0.3395 0.634 0.236 0.000 0.000 0.764 0.000
#> SRR1643176 4 0.3177 0.683 0.208 0.000 0.000 0.792 0.000
#> SRR1643177 4 0.3109 0.693 0.200 0.000 0.000 0.800 0.000
#> SRR1643178 4 0.3395 0.634 0.236 0.000 0.000 0.764 0.000
#> SRR1643180 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643181 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643182 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643183 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643184 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643185 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643186 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643187 5 0.3266 0.957 0.200 0.000 0.000 0.004 0.796
#> SRR1643188 5 0.3266 0.957 0.200 0.000 0.000 0.004 0.796
#> SRR1643189 5 0.3266 0.957 0.200 0.000 0.000 0.004 0.796
#> SRR1643190 5 0.3266 0.957 0.200 0.000 0.000 0.004 0.796
#> SRR1643191 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643192 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643193 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643194 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643195 5 0.3143 0.644 0.000 0.000 0.000 0.204 0.796
#> SRR1643196 5 0.3143 0.644 0.000 0.000 0.000 0.204 0.796
#> SRR1643197 1 0.1648 0.907 0.940 0.000 0.000 0.040 0.020
#> SRR1643198 1 0.1907 0.895 0.928 0.000 0.000 0.044 0.028
#> SRR1643199 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643200 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643201 5 0.3868 0.877 0.140 0.000 0.000 0.060 0.800
#> SRR1643202 5 0.3764 0.901 0.156 0.000 0.000 0.044 0.800
#> SRR1643203 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643204 5 0.3143 0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643205 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643206 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643207 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643208 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643209 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643210 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643211 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643212 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643213 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643214 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643215 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643216 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643217 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643218 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643219 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643220 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643221 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643222 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643223 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643224 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643225 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643226 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643227 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643228 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643229 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643230 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643231 3 0.0290 0.988 0.008 0.000 0.992 0.000 0.000
#> SRR1643232 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643233 3 0.0609 0.971 0.020 0.000 0.980 0.000 0.000
#> SRR1643234 3 0.0609 0.971 0.020 0.000 0.980 0.000 0.000
#> SRR1643235 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643236 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643237 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643238 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643239 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643240 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643241 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643242 5 0.6599 0.579 0.264 0.000 0.272 0.000 0.464
#> SRR1643243 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643245 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643246 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643247 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643248 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643249 5 0.3109 0.957 0.200 0.000 0.000 0.000 0.800
#> SRR1643250 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643251 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643252 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643253 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643254 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643255 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643256 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643257 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643258 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643259 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643260 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643261 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643262 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643263 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643264 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643266 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643267 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643268 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643269 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643270 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643271 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643272 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643273 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643274 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643275 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643276 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643277 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643278 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643279 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643280 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643281 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643282 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643283 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643284 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643285 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643286 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643287 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643288 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643289 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643290 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643291 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643292 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643293 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643294 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643295 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643296 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643297 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643298 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643299 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643300 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643301 1 0.2471 0.785 0.864 0.000 0.000 0.136 0.000
#> SRR1643302 1 0.1121 0.916 0.956 0.000 0.000 0.044 0.000
#> SRR1643303 1 0.2424 0.793 0.868 0.000 0.000 0.132 0.000
#> SRR1643304 1 0.2732 0.744 0.840 0.000 0.000 0.160 0.000
#> SRR1643305 1 0.3452 0.590 0.756 0.000 0.000 0.244 0.000
#> SRR1643306 1 0.3983 0.413 0.660 0.000 0.000 0.340 0.000
#> SRR1643307 1 0.1121 0.916 0.956 0.000 0.000 0.044 0.000
#> SRR1643308 1 0.2471 0.785 0.864 0.000 0.000 0.136 0.000
#> SRR1643309 1 0.2230 0.817 0.884 0.000 0.000 0.116 0.000
#> SRR1643310 4 0.4283 0.119 0.456 0.000 0.000 0.544 0.000
#> SRR1643311 1 0.3684 0.529 0.720 0.000 0.000 0.280 0.000
#> SRR1643312 1 0.2516 0.780 0.860 0.000 0.000 0.140 0.000
#> SRR1643313 1 0.2179 0.824 0.888 0.000 0.000 0.112 0.000
#> SRR1643314 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643315 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643316 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643317 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643318 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643319 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643320 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643321 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643322 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643323 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643324 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643325 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643326 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643327 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643328 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643329 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643330 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643331 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643332 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643333 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643334 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643335 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643336 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643337 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643338 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643339 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643340 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643341 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643342 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643343 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643344 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643345 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643346 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643347 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643348 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643349 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643350 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643351 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643352 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643353 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643354 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643355 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643356 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643357 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643358 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643359 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643360 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643361 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643362 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643363 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643364 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643365 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643366 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643367 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643368 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643369 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643370 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643371 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643372 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643373 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643374 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643375 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643376 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643377 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643378 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643379 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643380 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643381 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643382 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643383 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643384 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643385 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643386 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643387 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643388 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643389 4 0.0000 0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643390 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643391 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643392 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643393 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643394 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643395 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643396 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643397 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643398 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643399 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643400 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643401 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643402 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643403 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643404 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643405 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643406 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643407 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643408 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643409 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643410 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643411 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643412 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643413 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643414 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643415 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643416 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643417 1 0.0162 0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643418 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643419 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643420 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643421 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643422 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643423 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643424 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643425 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643426 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643427 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643428 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643429 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643430 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643431 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643432 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643433 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643434 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643435 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643436 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643437 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643438 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643439 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643440 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643441 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643442 4 0.0162 0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643443 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643444 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643445 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643446 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643447 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643448 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643449 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643450 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643451 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643452 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643453 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643454 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643455 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643456 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643457 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643458 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643459 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643460 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643461 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643462 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643463 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643464 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643466 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643467 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643468 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643469 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643470 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643471 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643472 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643473 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643474 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643475 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643477 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643478 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643479 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643480 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643481 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643482 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643483 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643484 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643485 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643486 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643487 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643488 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643489 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643490 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643491 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643492 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643493 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643494 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643495 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643496 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643497 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643498 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643499 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643500 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643501 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643502 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643503 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643504 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643505 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643506 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643507 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643508 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643509 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643510 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643511 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643512 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643513 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643531 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643532 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643533 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643534 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643535 2 0.3086 0.901 0.004 0.816 0.000 0.000 0.180
#> SRR1643536 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643537 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643538 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643539 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643540 2 0.3086 0.901 0.004 0.816 0.000 0.000 0.180
#> SRR1643541 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643542 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643543 2 0.3086 0.901 0.004 0.816 0.000 0.000 0.180
#> SRR1643544 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643514 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643515 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643516 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643517 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643518 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643519 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643520 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643521 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643522 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643523 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643524 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643525 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643526 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643527 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643528 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643529 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643530 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643545 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643546 2 0.0162 0.913 0.000 0.996 0.000 0.000 0.004
#> SRR1643547 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643548 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643549 2 0.0162 0.912 0.000 0.996 0.000 0.000 0.004
#> SRR1643550 2 0.3123 0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643551 2 0.0404 0.912 0.000 0.988 0.000 0.000 0.012
#> SRR1643552 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643553 2 0.0290 0.912 0.000 0.992 0.000 0.000 0.008
#> SRR1643554 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643555 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643556 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643558 2 0.0000 0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643559 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643560 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643561 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643562 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643563 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643564 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643565 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643566 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643567 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643568 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643569 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643570 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643571 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643572 2 0.3266 0.895 0.004 0.796 0.000 0.000 0.200
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643168 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643169 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643170 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643171 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643172 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643173 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643174 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643175 4 0.3200 0.726 0.196 0.000 0.000 0.788 0.016 0.000
#> SRR1643176 4 0.3104 0.744 0.184 0.000 0.000 0.800 0.016 0.000
#> SRR1643177 4 0.2932 0.772 0.164 0.000 0.000 0.820 0.016 0.000
#> SRR1643178 4 0.3231 0.720 0.200 0.000 0.000 0.784 0.016 0.000
#> SRR1643180 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643181 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643182 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643183 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643184 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643185 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643186 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643187 5 0.2191 0.963 0.120 0.000 0.000 0.004 0.876 0.000
#> SRR1643188 5 0.2191 0.963 0.120 0.000 0.000 0.004 0.876 0.000
#> SRR1643189 5 0.2191 0.963 0.120 0.000 0.000 0.004 0.876 0.000
#> SRR1643190 5 0.2191 0.963 0.120 0.000 0.000 0.004 0.876 0.000
#> SRR1643191 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643192 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643193 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643194 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643195 5 0.2092 0.797 0.000 0.000 0.000 0.124 0.876 0.000
#> SRR1643196 5 0.2092 0.797 0.000 0.000 0.000 0.124 0.876 0.000
#> SRR1643197 1 0.2001 0.885 0.912 0.000 0.000 0.040 0.048 0.000
#> SRR1643198 1 0.2197 0.871 0.900 0.000 0.000 0.044 0.056 0.000
#> SRR1643199 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643200 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643201 5 0.1765 0.895 0.052 0.000 0.000 0.024 0.924 0.000
#> SRR1643202 5 0.1950 0.908 0.064 0.000 0.000 0.024 0.912 0.000
#> SRR1643203 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643204 5 0.2092 0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643205 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643206 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643207 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643208 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643209 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643210 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643211 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643212 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643213 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643214 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643215 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643216 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643217 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643218 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643219 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643220 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643221 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643222 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643223 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643224 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643225 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643226 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643227 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643228 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643229 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643230 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643231 3 0.0363 0.983 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643232 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643233 3 0.0547 0.971 0.020 0.000 0.980 0.000 0.000 0.000
#> SRR1643234 3 0.0547 0.971 0.020 0.000 0.980 0.000 0.000 0.000
#> SRR1643235 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643236 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643237 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643238 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643239 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643240 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643241 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643242 5 0.5655 0.553 0.200 0.000 0.272 0.000 0.528 0.000
#> SRR1643243 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643245 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643246 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643247 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643248 3 0.0000 0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643249 5 0.0632 0.855 0.024 0.000 0.000 0.000 0.976 0.000
#> SRR1643250 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643251 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643252 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643253 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643254 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643255 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643256 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643257 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643258 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643259 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643260 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643261 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643262 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643263 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643264 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643266 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643267 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643268 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643269 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643270 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643271 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643272 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643273 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643274 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643275 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643276 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643277 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643278 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643279 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643280 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643281 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643282 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643283 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643284 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643285 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643286 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643287 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643288 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643289 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643290 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643291 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643292 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643293 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643294 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643295 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643296 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643297 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643298 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643299 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643300 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643301 1 0.2219 0.799 0.864 0.000 0.000 0.136 0.000 0.000
#> SRR1643302 1 0.1075 0.914 0.952 0.000 0.000 0.048 0.000 0.000
#> SRR1643303 1 0.2219 0.802 0.864 0.000 0.000 0.136 0.000 0.000
#> SRR1643304 1 0.2454 0.763 0.840 0.000 0.000 0.160 0.000 0.000
#> SRR1643305 1 0.3221 0.593 0.736 0.000 0.000 0.264 0.000 0.000
#> SRR1643306 1 0.3607 0.451 0.652 0.000 0.000 0.348 0.000 0.000
#> SRR1643307 1 0.1007 0.917 0.956 0.000 0.000 0.044 0.000 0.000
#> SRR1643308 1 0.2260 0.795 0.860 0.000 0.000 0.140 0.000 0.000
#> SRR1643309 1 0.2003 0.829 0.884 0.000 0.000 0.116 0.000 0.000
#> SRR1643310 4 0.3851 0.115 0.460 0.000 0.000 0.540 0.000 0.000
#> SRR1643311 1 0.3244 0.592 0.732 0.000 0.000 0.268 0.000 0.000
#> SRR1643312 1 0.2219 0.801 0.864 0.000 0.000 0.136 0.000 0.000
#> SRR1643313 1 0.1957 0.837 0.888 0.000 0.000 0.112 0.000 0.000
#> SRR1643314 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643315 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643316 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643317 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643318 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643319 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643320 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643321 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643322 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643323 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643324 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643325 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643326 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643327 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643328 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643329 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643330 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643331 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643332 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643333 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643334 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643335 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643336 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643337 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643338 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643339 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643340 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643341 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643342 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643343 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643344 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643345 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643346 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643347 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643348 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643349 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643350 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643351 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643352 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643353 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643354 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643355 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643356 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643357 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643358 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643359 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643360 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643361 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643362 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643363 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643364 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643365 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643366 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643367 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643368 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643369 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643370 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643371 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643372 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643373 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643374 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643375 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643376 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643377 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643378 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643379 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643380 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643381 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643382 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643383 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643384 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643385 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643386 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643387 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643388 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643389 4 0.0000 0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643390 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643391 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643392 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643393 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643394 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643395 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643396 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643397 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643398 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643399 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643400 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643401 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643402 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643403 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643404 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643405 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643406 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643407 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643408 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643409 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643410 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643411 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643412 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643413 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643414 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643415 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643416 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643417 1 0.0000 0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643418 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643419 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643420 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643421 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643422 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643423 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643424 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643425 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643426 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643427 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643428 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643429 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643430 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643431 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643432 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643433 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643434 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643435 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643436 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643437 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643438 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643439 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643440 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643441 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643442 4 0.2092 0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643443 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643444 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643445 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643446 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643447 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643448 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643449 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643450 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643451 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643452 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643453 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643454 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643455 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643456 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643457 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643458 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643459 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643460 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643461 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643462 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643463 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643464 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643466 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643467 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643468 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643469 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643470 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643471 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643472 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643473 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643474 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643475 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643477 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643478 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643479 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643480 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643481 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643482 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643483 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643484 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643485 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643486 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643487 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643488 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643489 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643490 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643491 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643492 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643493 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643494 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643495 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643496 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643497 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643498 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643499 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643500 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643501 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643502 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643503 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643504 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643505 6 0.1957 0.906 0.000 0.112 0.000 0.000 0.000 0.888
#> SRR1643506 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643507 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643508 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643509 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643510 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643511 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643512 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643513 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643531 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643532 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643533 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643534 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643535 6 0.1610 0.940 0.000 0.084 0.000 0.000 0.000 0.916
#> SRR1643536 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643537 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643538 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643539 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643540 6 0.1610 0.940 0.000 0.084 0.000 0.000 0.000 0.916
#> SRR1643541 6 0.1610 0.940 0.000 0.084 0.000 0.000 0.000 0.916
#> SRR1643542 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643543 6 0.1663 0.937 0.000 0.088 0.000 0.000 0.000 0.912
#> SRR1643544 6 0.1556 0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643514 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643515 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643516 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643517 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643518 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643519 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643520 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643521 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643522 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643523 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643524 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643525 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643526 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643527 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643528 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643529 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643530 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643545 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643546 2 0.0146 0.995 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643547 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643548 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643549 2 0.0146 0.995 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643550 6 0.3390 0.654 0.000 0.296 0.000 0.000 0.000 0.704
#> SRR1643551 2 0.0363 0.987 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643552 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643553 2 0.0260 0.991 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643554 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643555 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643556 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643558 2 0.0000 1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643559 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643560 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643561 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643562 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643563 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643564 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643565 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643566 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643567 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643568 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643569 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643570 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643571 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643572 6 0.0000 0.948 0.000 0.000 0.000 0.000 0.000 1.000
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["ATC", "mclust"]
# you can also extract it by
# res = res_list["ATC:mclust"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'ATC' method.
#> Subgroups are detected by 'mclust' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 3.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 0.804 0.890 0.949 0.4654 0.509 0.509
#> 3 3 0.911 0.882 0.933 0.2884 0.847 0.708
#> 4 4 0.826 0.888 0.889 0.1490 0.902 0.747
#> 5 5 0.739 0.867 0.822 0.0634 0.983 0.941
#> 6 6 0.737 0.779 0.828 0.0527 0.975 0.911
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 3
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0.995 1.000 0.54 0.46
#> SRR1643168 1 0.995 1.000 0.54 0.46
#> SRR1643169 1 0.995 1.000 0.54 0.46
#> SRR1643170 1 0.995 1.000 0.54 0.46
#> SRR1643171 1 0.995 1.000 0.54 0.46
#> SRR1643172 1 0.995 1.000 0.54 0.46
#> SRR1643173 1 0.995 1.000 0.54 0.46
#> SRR1643174 1 0.995 1.000 0.54 0.46
#> SRR1643175 1 0.995 1.000 0.54 0.46
#> SRR1643176 1 0.995 1.000 0.54 0.46
#> SRR1643177 1 0.995 1.000 0.54 0.46
#> SRR1643178 1 0.995 1.000 0.54 0.46
#> SRR1643180 1 0.995 1.000 0.54 0.46
#> SRR1643181 1 0.995 1.000 0.54 0.46
#> SRR1643182 1 0.995 1.000 0.54 0.46
#> SRR1643183 1 0.995 1.000 0.54 0.46
#> SRR1643184 1 0.995 1.000 0.54 0.46
#> SRR1643185 1 0.995 1.000 0.54 0.46
#> SRR1643186 1 0.995 1.000 0.54 0.46
#> SRR1643187 1 0.995 1.000 0.54 0.46
#> SRR1643188 1 0.995 1.000 0.54 0.46
#> SRR1643189 1 0.995 1.000 0.54 0.46
#> SRR1643190 1 0.995 1.000 0.54 0.46
#> SRR1643191 1 0.995 1.000 0.54 0.46
#> SRR1643192 1 0.995 1.000 0.54 0.46
#> SRR1643193 1 0.995 1.000 0.54 0.46
#> SRR1643194 1 0.995 1.000 0.54 0.46
#> SRR1643195 1 0.995 1.000 0.54 0.46
#> SRR1643196 1 0.995 1.000 0.54 0.46
#> SRR1643197 1 0.995 1.000 0.54 0.46
#> SRR1643198 1 0.995 1.000 0.54 0.46
#> SRR1643199 1 0.995 1.000 0.54 0.46
#> SRR1643200 1 0.995 1.000 0.54 0.46
#> SRR1643201 1 0.995 1.000 0.54 0.46
#> SRR1643202 1 0.995 1.000 0.54 0.46
#> SRR1643203 1 0.995 1.000 0.54 0.46
#> SRR1643204 1 0.995 1.000 0.54 0.46
#> SRR1643205 2 0.000 0.364 0.00 1.00
#> SRR1643206 2 0.000 0.364 0.00 1.00
#> SRR1643207 2 0.000 0.364 0.00 1.00
#> SRR1643208 2 0.000 0.364 0.00 1.00
#> SRR1643209 2 0.000 0.364 0.00 1.00
#> SRR1643210 2 0.000 0.364 0.00 1.00
#> SRR1643211 2 0.000 0.364 0.00 1.00
#> SRR1643212 2 0.000 0.364 0.00 1.00
#> SRR1643213 2 0.000 0.364 0.00 1.00
#> SRR1643214 2 0.000 0.364 0.00 1.00
#> SRR1643215 2 0.000 0.364 0.00 1.00
#> SRR1643216 2 0.000 0.364 0.00 1.00
#> SRR1643217 2 0.000 0.364 0.00 1.00
#> SRR1643218 2 0.000 0.364 0.00 1.00
#> SRR1643219 2 0.000 0.364 0.00 1.00
#> SRR1643220 2 0.000 0.364 0.00 1.00
#> SRR1643221 2 0.000 0.364 0.00 1.00
#> SRR1643222 2 0.000 0.364 0.00 1.00
#> SRR1643223 2 0.000 0.364 0.00 1.00
#> SRR1643224 2 0.000 0.364 0.00 1.00
#> SRR1643225 2 0.000 0.364 0.00 1.00
#> SRR1643226 2 0.000 0.364 0.00 1.00
#> SRR1643227 2 0.000 0.364 0.00 1.00
#> SRR1643228 2 0.000 0.364 0.00 1.00
#> SRR1643229 2 0.000 0.364 0.00 1.00
#> SRR1643230 2 0.000 0.364 0.00 1.00
#> SRR1643231 2 0.000 0.364 0.00 1.00
#> SRR1643232 2 0.000 0.364 0.00 1.00
#> SRR1643233 2 0.000 0.364 0.00 1.00
#> SRR1643234 2 0.000 0.364 0.00 1.00
#> SRR1643235 2 0.000 0.364 0.00 1.00
#> SRR1643236 2 0.000 0.364 0.00 1.00
#> SRR1643237 2 0.000 0.364 0.00 1.00
#> SRR1643238 2 0.000 0.364 0.00 1.00
#> SRR1643239 2 0.000 0.364 0.00 1.00
#> SRR1643240 2 0.000 0.364 0.00 1.00
#> SRR1643241 2 0.000 0.364 0.00 1.00
#> SRR1643242 2 0.000 0.364 0.00 1.00
#> SRR1643243 2 0.000 0.364 0.00 1.00
#> SRR1643245 2 0.000 0.364 0.00 1.00
#> SRR1643246 2 0.000 0.364 0.00 1.00
#> SRR1643247 2 0.000 0.364 0.00 1.00
#> SRR1643248 2 0.000 0.364 0.00 1.00
#> SRR1643249 2 0.000 0.364 0.00 1.00
#> SRR1643250 1 0.995 1.000 0.54 0.46
#> SRR1643251 1 0.995 1.000 0.54 0.46
#> SRR1643252 1 0.995 1.000 0.54 0.46
#> SRR1643253 1 0.995 1.000 0.54 0.46
#> SRR1643254 1 0.995 1.000 0.54 0.46
#> SRR1643255 1 0.995 1.000 0.54 0.46
#> SRR1643256 1 0.995 1.000 0.54 0.46
#> SRR1643257 1 0.995 1.000 0.54 0.46
#> SRR1643258 1 0.995 1.000 0.54 0.46
#> SRR1643259 1 0.995 1.000 0.54 0.46
#> SRR1643260 1 0.995 1.000 0.54 0.46
#> SRR1643261 1 0.995 1.000 0.54 0.46
#> SRR1643262 1 0.995 1.000 0.54 0.46
#> SRR1643263 1 0.995 1.000 0.54 0.46
#> SRR1643264 1 0.995 1.000 0.54 0.46
#> SRR1643266 1 0.995 1.000 0.54 0.46
#> SRR1643267 1 0.995 1.000 0.54 0.46
#> SRR1643268 1 0.995 1.000 0.54 0.46
#> SRR1643269 1 0.995 1.000 0.54 0.46
#> SRR1643270 1 0.995 1.000 0.54 0.46
#> SRR1643271 1 0.995 1.000 0.54 0.46
#> SRR1643272 1 0.995 1.000 0.54 0.46
#> SRR1643273 1 0.995 1.000 0.54 0.46
#> SRR1643274 1 0.995 1.000 0.54 0.46
#> SRR1643275 1 0.995 1.000 0.54 0.46
#> SRR1643276 1 0.995 1.000 0.54 0.46
#> SRR1643277 1 0.995 1.000 0.54 0.46
#> SRR1643278 1 0.995 1.000 0.54 0.46
#> SRR1643279 1 0.995 1.000 0.54 0.46
#> SRR1643280 1 0.995 1.000 0.54 0.46
#> SRR1643281 1 0.995 1.000 0.54 0.46
#> SRR1643282 1 0.995 1.000 0.54 0.46
#> SRR1643283 1 0.995 1.000 0.54 0.46
#> SRR1643284 1 0.995 1.000 0.54 0.46
#> SRR1643285 1 0.995 1.000 0.54 0.46
#> SRR1643286 1 0.995 1.000 0.54 0.46
#> SRR1643287 1 0.995 1.000 0.54 0.46
#> SRR1643288 1 0.995 1.000 0.54 0.46
#> SRR1643289 1 0.995 1.000 0.54 0.46
#> SRR1643290 1 0.995 1.000 0.54 0.46
#> SRR1643291 1 0.995 1.000 0.54 0.46
#> SRR1643292 1 0.995 1.000 0.54 0.46
#> SRR1643293 1 0.995 1.000 0.54 0.46
#> SRR1643294 1 0.995 1.000 0.54 0.46
#> SRR1643295 1 0.995 1.000 0.54 0.46
#> SRR1643296 1 0.995 1.000 0.54 0.46
#> SRR1643297 1 0.995 1.000 0.54 0.46
#> SRR1643298 1 0.995 1.000 0.54 0.46
#> SRR1643299 1 0.995 1.000 0.54 0.46
#> SRR1643300 1 0.995 1.000 0.54 0.46
#> SRR1643301 1 0.995 1.000 0.54 0.46
#> SRR1643302 1 0.995 1.000 0.54 0.46
#> SRR1643303 1 0.995 1.000 0.54 0.46
#> SRR1643304 1 0.995 1.000 0.54 0.46
#> SRR1643305 1 0.995 1.000 0.54 0.46
#> SRR1643306 1 0.995 1.000 0.54 0.46
#> SRR1643307 1 0.995 1.000 0.54 0.46
#> SRR1643308 1 0.995 1.000 0.54 0.46
#> SRR1643309 1 0.995 1.000 0.54 0.46
#> SRR1643310 1 0.995 1.000 0.54 0.46
#> SRR1643311 1 0.995 1.000 0.54 0.46
#> SRR1643312 1 0.995 1.000 0.54 0.46
#> SRR1643313 1 0.995 1.000 0.54 0.46
#> SRR1643314 1 0.995 1.000 0.54 0.46
#> SRR1643315 1 0.995 1.000 0.54 0.46
#> SRR1643316 1 0.995 1.000 0.54 0.46
#> SRR1643317 1 0.995 1.000 0.54 0.46
#> SRR1643318 1 0.995 1.000 0.54 0.46
#> SRR1643319 1 0.995 1.000 0.54 0.46
#> SRR1643320 1 0.995 1.000 0.54 0.46
#> SRR1643321 1 0.995 1.000 0.54 0.46
#> SRR1643322 1 0.995 1.000 0.54 0.46
#> SRR1643323 1 0.995 1.000 0.54 0.46
#> SRR1643324 1 0.995 1.000 0.54 0.46
#> SRR1643325 1 0.995 1.000 0.54 0.46
#> SRR1643326 1 0.995 1.000 0.54 0.46
#> SRR1643327 1 0.995 1.000 0.54 0.46
#> SRR1643328 1 0.995 1.000 0.54 0.46
#> SRR1643329 1 0.995 1.000 0.54 0.46
#> SRR1643330 1 0.995 1.000 0.54 0.46
#> SRR1643331 1 0.995 1.000 0.54 0.46
#> SRR1643332 1 0.995 1.000 0.54 0.46
#> SRR1643333 1 0.995 1.000 0.54 0.46
#> SRR1643334 1 0.995 1.000 0.54 0.46
#> SRR1643335 1 0.995 1.000 0.54 0.46
#> SRR1643336 1 0.995 1.000 0.54 0.46
#> SRR1643337 1 0.995 1.000 0.54 0.46
#> SRR1643338 1 0.995 1.000 0.54 0.46
#> SRR1643339 1 0.995 1.000 0.54 0.46
#> SRR1643340 1 0.995 1.000 0.54 0.46
#> SRR1643341 1 0.995 1.000 0.54 0.46
#> SRR1643342 1 0.995 1.000 0.54 0.46
#> SRR1643343 1 0.995 1.000 0.54 0.46
#> SRR1643344 1 0.995 1.000 0.54 0.46
#> SRR1643345 1 0.995 1.000 0.54 0.46
#> SRR1643346 1 0.995 1.000 0.54 0.46
#> SRR1643347 1 0.995 1.000 0.54 0.46
#> SRR1643348 1 0.995 1.000 0.54 0.46
#> SRR1643349 1 0.995 1.000 0.54 0.46
#> SRR1643350 1 0.995 1.000 0.54 0.46
#> SRR1643351 1 0.995 1.000 0.54 0.46
#> SRR1643352 1 0.995 1.000 0.54 0.46
#> SRR1643353 1 0.995 1.000 0.54 0.46
#> SRR1643354 1 0.995 1.000 0.54 0.46
#> SRR1643355 1 0.995 1.000 0.54 0.46
#> SRR1643356 1 0.995 1.000 0.54 0.46
#> SRR1643357 1 0.995 1.000 0.54 0.46
#> SRR1643358 1 0.995 1.000 0.54 0.46
#> SRR1643359 1 0.995 1.000 0.54 0.46
#> SRR1643360 1 0.995 1.000 0.54 0.46
#> SRR1643361 1 0.995 1.000 0.54 0.46
#> SRR1643362 1 0.995 1.000 0.54 0.46
#> SRR1643363 1 0.995 1.000 0.54 0.46
#> SRR1643364 1 0.995 1.000 0.54 0.46
#> SRR1643365 1 0.995 1.000 0.54 0.46
#> SRR1643366 1 0.995 1.000 0.54 0.46
#> SRR1643367 1 0.995 1.000 0.54 0.46
#> SRR1643368 1 0.995 1.000 0.54 0.46
#> SRR1643369 1 0.995 1.000 0.54 0.46
#> SRR1643370 1 0.995 1.000 0.54 0.46
#> SRR1643371 1 0.995 1.000 0.54 0.46
#> SRR1643372 1 0.995 1.000 0.54 0.46
#> SRR1643373 1 0.995 1.000 0.54 0.46
#> SRR1643374 1 0.995 1.000 0.54 0.46
#> SRR1643375 1 0.995 1.000 0.54 0.46
#> SRR1643376 1 0.995 1.000 0.54 0.46
#> SRR1643377 1 0.995 1.000 0.54 0.46
#> SRR1643378 1 0.995 1.000 0.54 0.46
#> SRR1643379 1 0.995 1.000 0.54 0.46
#> SRR1643380 1 0.995 1.000 0.54 0.46
#> SRR1643381 1 0.995 1.000 0.54 0.46
#> SRR1643382 1 0.995 1.000 0.54 0.46
#> SRR1643383 1 0.995 1.000 0.54 0.46
#> SRR1643384 1 0.995 1.000 0.54 0.46
#> SRR1643385 1 0.995 1.000 0.54 0.46
#> SRR1643386 1 0.995 1.000 0.54 0.46
#> SRR1643387 1 0.995 1.000 0.54 0.46
#> SRR1643388 1 0.995 1.000 0.54 0.46
#> SRR1643389 1 0.995 1.000 0.54 0.46
#> SRR1643390 1 0.995 1.000 0.54 0.46
#> SRR1643391 1 0.995 1.000 0.54 0.46
#> SRR1643392 1 0.995 1.000 0.54 0.46
#> SRR1643393 1 0.995 1.000 0.54 0.46
#> SRR1643394 1 0.995 1.000 0.54 0.46
#> SRR1643395 1 0.995 1.000 0.54 0.46
#> SRR1643396 1 0.995 1.000 0.54 0.46
#> SRR1643397 1 0.995 1.000 0.54 0.46
#> SRR1643398 1 0.995 1.000 0.54 0.46
#> SRR1643399 1 0.995 1.000 0.54 0.46
#> SRR1643400 1 0.995 1.000 0.54 0.46
#> SRR1643401 1 0.995 1.000 0.54 0.46
#> SRR1643402 1 0.995 1.000 0.54 0.46
#> SRR1643403 1 0.995 1.000 0.54 0.46
#> SRR1643404 1 0.995 1.000 0.54 0.46
#> SRR1643405 1 0.995 1.000 0.54 0.46
#> SRR1643406 1 0.995 1.000 0.54 0.46
#> SRR1643407 1 0.995 1.000 0.54 0.46
#> SRR1643408 1 0.995 1.000 0.54 0.46
#> SRR1643409 1 0.995 1.000 0.54 0.46
#> SRR1643410 1 0.995 1.000 0.54 0.46
#> SRR1643411 1 0.995 1.000 0.54 0.46
#> SRR1643412 1 0.995 1.000 0.54 0.46
#> SRR1643413 1 0.995 1.000 0.54 0.46
#> SRR1643414 1 0.995 1.000 0.54 0.46
#> SRR1643415 1 0.995 1.000 0.54 0.46
#> SRR1643416 1 0.995 1.000 0.54 0.46
#> SRR1643417 1 0.995 1.000 0.54 0.46
#> SRR1643418 1 0.995 1.000 0.54 0.46
#> SRR1643419 1 0.995 1.000 0.54 0.46
#> SRR1643420 1 0.995 1.000 0.54 0.46
#> SRR1643421 1 0.995 1.000 0.54 0.46
#> SRR1643422 1 0.995 1.000 0.54 0.46
#> SRR1643423 1 0.995 1.000 0.54 0.46
#> SRR1643424 1 0.995 1.000 0.54 0.46
#> SRR1643425 1 0.995 1.000 0.54 0.46
#> SRR1643426 1 0.995 1.000 0.54 0.46
#> SRR1643427 1 0.995 1.000 0.54 0.46
#> SRR1643428 1 0.995 1.000 0.54 0.46
#> SRR1643429 1 0.995 1.000 0.54 0.46
#> SRR1643430 1 0.995 1.000 0.54 0.46
#> SRR1643431 1 0.995 1.000 0.54 0.46
#> SRR1643432 1 0.995 1.000 0.54 0.46
#> SRR1643433 1 0.995 1.000 0.54 0.46
#> SRR1643434 1 0.995 1.000 0.54 0.46
#> SRR1643435 1 0.995 1.000 0.54 0.46
#> SRR1643436 1 0.995 1.000 0.54 0.46
#> SRR1643437 1 0.995 1.000 0.54 0.46
#> SRR1643438 1 0.995 1.000 0.54 0.46
#> SRR1643439 1 0.995 1.000 0.54 0.46
#> SRR1643440 1 0.995 1.000 0.54 0.46
#> SRR1643441 1 0.995 1.000 0.54 0.46
#> SRR1643442 1 0.995 1.000 0.54 0.46
#> SRR1643443 2 0.995 0.874 0.46 0.54
#> SRR1643444 2 0.995 0.874 0.46 0.54
#> SRR1643445 2 0.995 0.874 0.46 0.54
#> SRR1643446 2 0.995 0.874 0.46 0.54
#> SRR1643447 2 0.995 0.874 0.46 0.54
#> SRR1643448 2 0.995 0.874 0.46 0.54
#> SRR1643449 2 0.995 0.874 0.46 0.54
#> SRR1643450 2 0.995 0.874 0.46 0.54
#> SRR1643451 2 0.995 0.874 0.46 0.54
#> SRR1643452 2 0.995 0.874 0.46 0.54
#> SRR1643453 2 0.995 0.874 0.46 0.54
#> SRR1643454 2 0.995 0.874 0.46 0.54
#> SRR1643455 2 0.995 0.874 0.46 0.54
#> SRR1643456 2 0.995 0.874 0.46 0.54
#> SRR1643457 2 0.995 0.874 0.46 0.54
#> SRR1643458 2 0.995 0.874 0.46 0.54
#> SRR1643459 2 0.995 0.874 0.46 0.54
#> SRR1643460 2 0.995 0.874 0.46 0.54
#> SRR1643461 2 0.995 0.874 0.46 0.54
#> SRR1643462 2 0.995 0.874 0.46 0.54
#> SRR1643463 2 0.995 0.874 0.46 0.54
#> SRR1643464 2 0.995 0.874 0.46 0.54
#> SRR1643466 2 0.995 0.874 0.46 0.54
#> SRR1643467 2 0.995 0.874 0.46 0.54
#> SRR1643468 2 0.995 0.874 0.46 0.54
#> SRR1643469 2 0.995 0.874 0.46 0.54
#> SRR1643470 2 0.995 0.874 0.46 0.54
#> SRR1643471 2 0.995 0.874 0.46 0.54
#> SRR1643472 2 0.995 0.874 0.46 0.54
#> SRR1643473 2 0.995 0.874 0.46 0.54
#> SRR1643474 2 0.995 0.874 0.46 0.54
#> SRR1643475 2 0.995 0.874 0.46 0.54
#> SRR1643477 2 0.995 0.874 0.46 0.54
#> SRR1643478 2 0.995 0.874 0.46 0.54
#> SRR1643479 2 0.995 0.874 0.46 0.54
#> SRR1643480 2 0.995 0.874 0.46 0.54
#> SRR1643481 2 0.995 0.874 0.46 0.54
#> SRR1643482 2 0.995 0.874 0.46 0.54
#> SRR1643483 2 0.995 0.874 0.46 0.54
#> SRR1643484 2 0.995 0.874 0.46 0.54
#> SRR1643485 2 0.995 0.874 0.46 0.54
#> SRR1643486 2 0.995 0.874 0.46 0.54
#> SRR1643487 2 0.995 0.874 0.46 0.54
#> SRR1643488 2 0.995 0.874 0.46 0.54
#> SRR1643489 2 0.995 0.874 0.46 0.54
#> SRR1643490 2 0.995 0.874 0.46 0.54
#> SRR1643491 2 0.995 0.874 0.46 0.54
#> SRR1643492 2 0.995 0.874 0.46 0.54
#> SRR1643493 2 0.995 0.874 0.46 0.54
#> SRR1643494 2 0.995 0.874 0.46 0.54
#> SRR1643495 2 0.995 0.874 0.46 0.54
#> SRR1643496 2 0.995 0.874 0.46 0.54
#> SRR1643497 2 0.995 0.874 0.46 0.54
#> SRR1643498 2 0.995 0.874 0.46 0.54
#> SRR1643499 2 0.995 0.874 0.46 0.54
#> SRR1643500 2 0.995 0.874 0.46 0.54
#> SRR1643501 2 0.995 0.874 0.46 0.54
#> SRR1643502 2 0.995 0.874 0.46 0.54
#> SRR1643503 2 0.995 0.874 0.46 0.54
#> SRR1643504 2 0.995 0.874 0.46 0.54
#> SRR1643505 2 0.995 0.874 0.46 0.54
#> SRR1643506 2 0.995 0.874 0.46 0.54
#> SRR1643507 2 0.995 0.874 0.46 0.54
#> SRR1643508 2 0.995 0.874 0.46 0.54
#> SRR1643509 2 0.995 0.874 0.46 0.54
#> SRR1643510 2 0.995 0.874 0.46 0.54
#> SRR1643511 2 0.995 0.874 0.46 0.54
#> SRR1643512 2 0.995 0.874 0.46 0.54
#> SRR1643513 2 0.995 0.874 0.46 0.54
#> SRR1643531 2 0.995 0.874 0.46 0.54
#> SRR1643532 2 0.995 0.874 0.46 0.54
#> SRR1643533 2 0.995 0.874 0.46 0.54
#> SRR1643534 2 0.995 0.874 0.46 0.54
#> SRR1643535 2 0.995 0.874 0.46 0.54
#> SRR1643536 2 0.995 0.874 0.46 0.54
#> SRR1643537 2 0.995 0.874 0.46 0.54
#> SRR1643538 2 0.995 0.874 0.46 0.54
#> SRR1643539 2 0.995 0.874 0.46 0.54
#> SRR1643540 2 0.995 0.874 0.46 0.54
#> SRR1643541 2 0.995 0.874 0.46 0.54
#> SRR1643542 2 0.995 0.874 0.46 0.54
#> SRR1643543 2 0.995 0.874 0.46 0.54
#> SRR1643544 2 0.995 0.874 0.46 0.54
#> SRR1643514 2 0.995 0.874 0.46 0.54
#> SRR1643515 2 0.995 0.874 0.46 0.54
#> SRR1643516 2 0.995 0.874 0.46 0.54
#> SRR1643517 2 0.995 0.874 0.46 0.54
#> SRR1643518 2 0.995 0.874 0.46 0.54
#> SRR1643519 2 0.995 0.874 0.46 0.54
#> SRR1643520 2 0.995 0.874 0.46 0.54
#> SRR1643521 2 0.995 0.874 0.46 0.54
#> SRR1643522 2 0.995 0.874 0.46 0.54
#> SRR1643523 2 0.995 0.874 0.46 0.54
#> SRR1643524 2 0.995 0.874 0.46 0.54
#> SRR1643525 2 0.995 0.874 0.46 0.54
#> SRR1643526 2 0.995 0.874 0.46 0.54
#> SRR1643527 2 0.995 0.874 0.46 0.54
#> SRR1643528 2 0.995 0.874 0.46 0.54
#> SRR1643529 2 0.995 0.874 0.46 0.54
#> SRR1643530 2 0.995 0.874 0.46 0.54
#> SRR1643545 2 0.995 0.874 0.46 0.54
#> SRR1643546 2 0.995 0.874 0.46 0.54
#> SRR1643547 2 0.995 0.874 0.46 0.54
#> SRR1643548 2 0.995 0.874 0.46 0.54
#> SRR1643549 2 0.995 0.874 0.46 0.54
#> SRR1643550 2 0.995 0.874 0.46 0.54
#> SRR1643551 2 0.995 0.874 0.46 0.54
#> SRR1643552 2 0.995 0.874 0.46 0.54
#> SRR1643553 2 0.995 0.874 0.46 0.54
#> SRR1643554 2 0.995 0.874 0.46 0.54
#> SRR1643555 2 0.995 0.874 0.46 0.54
#> SRR1643556 2 0.995 0.874 0.46 0.54
#> SRR1643558 2 0.995 0.874 0.46 0.54
#> SRR1643559 2 0.995 0.874 0.46 0.54
#> SRR1643560 2 0.995 0.874 0.46 0.54
#> SRR1643561 2 0.995 0.874 0.46 0.54
#> SRR1643562 2 0.995 0.874 0.46 0.54
#> SRR1643563 2 0.995 0.874 0.46 0.54
#> SRR1643564 2 0.995 0.874 0.46 0.54
#> SRR1643565 2 0.995 0.874 0.46 0.54
#> SRR1643566 2 0.995 0.874 0.46 0.54
#> SRR1643567 2 0.995 0.874 0.46 0.54
#> SRR1643568 2 0.995 0.874 0.46 0.54
#> SRR1643569 2 0.995 0.874 0.46 0.54
#> SRR1643570 2 0.995 0.874 0.46 0.54
#> SRR1643571 2 0.995 0.874 0.46 0.54
#> SRR1643572 2 0.995 0.874 0.46 0.54
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.2625 0.9326 0.916 0.000 0.084
#> SRR1643168 1 0.2625 0.9326 0.916 0.000 0.084
#> SRR1643169 1 0.2625 0.9326 0.916 0.000 0.084
#> SRR1643170 1 0.2625 0.9326 0.916 0.000 0.084
#> SRR1643171 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643172 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643173 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643174 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643175 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643176 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643177 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643178 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643180 1 0.4504 0.7988 0.804 0.000 0.196
#> SRR1643181 1 0.4504 0.7988 0.804 0.000 0.196
#> SRR1643182 1 0.4796 0.7573 0.780 0.000 0.220
#> SRR1643183 1 0.2625 0.9325 0.916 0.000 0.084
#> SRR1643184 1 0.2625 0.9325 0.916 0.000 0.084
#> SRR1643185 1 0.2625 0.9325 0.916 0.000 0.084
#> SRR1643186 1 0.2625 0.9325 0.916 0.000 0.084
#> SRR1643187 1 0.6307 -0.0907 0.512 0.000 0.488
#> SRR1643188 1 0.6307 -0.0907 0.512 0.000 0.488
#> SRR1643189 1 0.6307 -0.0907 0.512 0.000 0.488
#> SRR1643190 1 0.6307 -0.0907 0.512 0.000 0.488
#> SRR1643191 3 0.6204 0.3986 0.424 0.000 0.576
#> SRR1643192 3 0.6225 0.3825 0.432 0.000 0.568
#> SRR1643193 1 0.4346 0.8137 0.816 0.000 0.184
#> SRR1643194 1 0.4399 0.8072 0.812 0.000 0.188
#> SRR1643195 1 0.2711 0.9297 0.912 0.000 0.088
#> SRR1643196 1 0.2625 0.9325 0.916 0.000 0.084
#> SRR1643197 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643198 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643199 1 0.2625 0.9326 0.916 0.000 0.084
#> SRR1643200 1 0.2625 0.9326 0.916 0.000 0.084
#> SRR1643201 1 0.5760 0.5131 0.672 0.000 0.328
#> SRR1643202 1 0.5785 0.5009 0.668 0.000 0.332
#> SRR1643203 1 0.6062 0.3451 0.616 0.000 0.384
#> SRR1643204 1 0.6079 0.3311 0.612 0.000 0.388
#> SRR1643205 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643206 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643207 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643208 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643209 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643210 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643211 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643212 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643213 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643214 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643215 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643216 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643217 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643218 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643219 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643220 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643221 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643222 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643223 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643224 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643225 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643226 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643227 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643228 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643229 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643230 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643231 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643232 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643233 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643234 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643235 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643236 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643237 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643238 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643239 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643240 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643241 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643242 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643243 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643245 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643246 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643247 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643248 3 0.0000 0.8104 0.000 0.000 1.000
#> SRR1643249 3 0.0237 0.8093 0.004 0.000 0.996
#> SRR1643250 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643251 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643252 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643253 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643254 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643255 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643256 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643257 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643258 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643259 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643260 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643261 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643262 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643263 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643264 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643266 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643267 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643268 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643269 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643270 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643271 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643272 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643273 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643274 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643275 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643276 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643277 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643278 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643279 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643280 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643281 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643282 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643283 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643284 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643285 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643286 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643287 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643288 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643289 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643290 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643291 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643292 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643293 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643294 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643295 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643296 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643297 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643298 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643299 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643300 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643301 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643302 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643303 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643304 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643305 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643306 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643307 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643308 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643309 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643310 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643311 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643312 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643313 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643314 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643315 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643316 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643317 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643318 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643319 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643320 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643321 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643322 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643323 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643324 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643325 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643326 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643327 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643328 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643329 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643330 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643331 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643332 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643333 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643334 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643335 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643336 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643337 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643338 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643339 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643340 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643341 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643342 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643343 1 0.3551 0.8930 0.868 0.000 0.132
#> SRR1643344 1 0.3551 0.8930 0.868 0.000 0.132
#> SRR1643345 1 0.3551 0.8930 0.868 0.000 0.132
#> SRR1643346 1 0.3551 0.8930 0.868 0.000 0.132
#> SRR1643347 1 0.3551 0.8930 0.868 0.000 0.132
#> SRR1643348 1 0.3551 0.8930 0.868 0.000 0.132
#> SRR1643349 1 0.3551 0.8930 0.868 0.000 0.132
#> SRR1643350 1 0.3551 0.8930 0.868 0.000 0.132
#> SRR1643351 1 0.3551 0.8930 0.868 0.000 0.132
#> SRR1643352 1 0.3551 0.8930 0.868 0.000 0.132
#> SRR1643353 1 0.3551 0.8930 0.868 0.000 0.132
#> SRR1643354 1 0.3551 0.8930 0.868 0.000 0.132
#> SRR1643355 1 0.3551 0.8930 0.868 0.000 0.132
#> SRR1643356 1 0.3551 0.8930 0.868 0.000 0.132
#> SRR1643357 1 0.3551 0.8930 0.868 0.000 0.132
#> SRR1643358 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643359 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643360 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643361 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643362 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643363 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643364 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643365 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643366 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643367 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643368 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643369 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643370 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643371 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643372 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643373 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643374 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643375 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643376 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643377 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643378 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643379 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643380 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643381 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643382 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643383 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643384 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643385 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643386 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643387 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643388 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643389 1 0.0000 0.9065 1.000 0.000 0.000
#> SRR1643390 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643391 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643392 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643393 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643394 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643395 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643396 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643397 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643398 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643399 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643400 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643401 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643402 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643403 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643404 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643405 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643406 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643407 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643408 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643409 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643410 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643411 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643412 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643413 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643414 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643415 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643416 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643417 1 0.2537 0.9349 0.920 0.000 0.080
#> SRR1643418 3 0.5948 0.5356 0.360 0.000 0.640
#> SRR1643419 3 0.5948 0.5356 0.360 0.000 0.640
#> SRR1643420 3 0.5948 0.5356 0.360 0.000 0.640
#> SRR1643421 3 0.5948 0.5356 0.360 0.000 0.640
#> SRR1643422 3 0.5948 0.5356 0.360 0.000 0.640
#> SRR1643423 3 0.5948 0.5356 0.360 0.000 0.640
#> SRR1643424 3 0.5948 0.5356 0.360 0.000 0.640
#> SRR1643425 3 0.5948 0.5356 0.360 0.000 0.640
#> SRR1643426 3 0.5948 0.5356 0.360 0.000 0.640
#> SRR1643427 3 0.5948 0.5356 0.360 0.000 0.640
#> SRR1643428 3 0.5948 0.5356 0.360 0.000 0.640
#> SRR1643429 3 0.5948 0.5356 0.360 0.000 0.640
#> SRR1643430 3 0.6244 0.3719 0.440 0.000 0.560
#> SRR1643431 3 0.6244 0.3719 0.440 0.000 0.560
#> SRR1643432 3 0.6252 0.3602 0.444 0.000 0.556
#> SRR1643433 3 0.6244 0.3719 0.440 0.000 0.560
#> SRR1643434 3 0.6252 0.3602 0.444 0.000 0.556
#> SRR1643435 3 0.6244 0.3719 0.440 0.000 0.560
#> SRR1643436 3 0.6252 0.3602 0.444 0.000 0.556
#> SRR1643437 3 0.6252 0.3602 0.444 0.000 0.556
#> SRR1643438 3 0.6252 0.3602 0.444 0.000 0.556
#> SRR1643439 3 0.6252 0.3602 0.444 0.000 0.556
#> SRR1643440 3 0.6244 0.3719 0.440 0.000 0.560
#> SRR1643441 3 0.6244 0.3719 0.440 0.000 0.560
#> SRR1643442 3 0.6244 0.3719 0.440 0.000 0.560
#> SRR1643443 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643444 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643445 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643446 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643447 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643448 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643449 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643450 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643451 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643452 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643453 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643454 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643455 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643456 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643457 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643458 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643459 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643460 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643461 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643462 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643463 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643464 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643466 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643467 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643468 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643469 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643470 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643471 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643472 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643473 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643474 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643475 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643477 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643478 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643479 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643480 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643481 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643482 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643483 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643484 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643485 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643486 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643487 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643488 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643489 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643490 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643491 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643492 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643493 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643494 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643495 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643496 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643497 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643498 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643499 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643500 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643501 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643502 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643503 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643504 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643505 2 0.1643 0.9623 0.000 0.956 0.044
#> SRR1643506 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643507 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643508 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643509 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643510 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643511 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643512 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643513 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643531 2 0.1643 0.9623 0.000 0.956 0.044
#> SRR1643532 2 0.1643 0.9623 0.000 0.956 0.044
#> SRR1643533 2 0.1643 0.9623 0.000 0.956 0.044
#> SRR1643534 2 0.1643 0.9623 0.000 0.956 0.044
#> SRR1643535 2 0.1643 0.9623 0.000 0.956 0.044
#> SRR1643536 2 0.1643 0.9623 0.000 0.956 0.044
#> SRR1643537 2 0.1643 0.9623 0.000 0.956 0.044
#> SRR1643538 2 0.1643 0.9623 0.000 0.956 0.044
#> SRR1643539 2 0.1643 0.9623 0.000 0.956 0.044
#> SRR1643540 2 0.1643 0.9623 0.000 0.956 0.044
#> SRR1643541 2 0.1643 0.9623 0.000 0.956 0.044
#> SRR1643542 2 0.1643 0.9623 0.000 0.956 0.044
#> SRR1643543 2 0.1643 0.9623 0.000 0.956 0.044
#> SRR1643544 2 0.1643 0.9623 0.000 0.956 0.044
#> SRR1643514 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643515 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643516 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643517 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643518 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643519 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643520 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643521 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643522 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643523 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643524 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643525 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643526 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643527 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643528 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643529 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643530 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643545 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643546 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643547 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643548 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643549 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643550 2 0.0892 0.9804 0.000 0.980 0.020
#> SRR1643551 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643552 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643553 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643554 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643555 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643556 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643558 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643559 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643560 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643561 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643562 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643563 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643564 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643565 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643566 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643567 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643568 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643569 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643570 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643571 2 0.0000 0.9949 0.000 1.000 0.000
#> SRR1643572 2 0.0000 0.9949 0.000 1.000 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.2256 0.841 0.924 0.000 0.020 0.056
#> SRR1643168 1 0.2256 0.841 0.924 0.000 0.020 0.056
#> SRR1643169 1 0.2256 0.841 0.924 0.000 0.020 0.056
#> SRR1643170 1 0.2256 0.841 0.924 0.000 0.020 0.056
#> SRR1643171 1 0.0672 0.872 0.984 0.000 0.008 0.008
#> SRR1643172 1 0.0524 0.872 0.988 0.000 0.004 0.008
#> SRR1643173 1 0.0672 0.872 0.984 0.000 0.008 0.008
#> SRR1643174 1 0.0524 0.872 0.988 0.000 0.004 0.008
#> SRR1643175 1 0.2300 0.839 0.920 0.000 0.064 0.016
#> SRR1643176 1 0.2300 0.839 0.920 0.000 0.064 0.016
#> SRR1643177 1 0.2300 0.839 0.920 0.000 0.064 0.016
#> SRR1643178 1 0.2300 0.839 0.920 0.000 0.064 0.016
#> SRR1643180 1 0.3907 0.746 0.828 0.000 0.140 0.032
#> SRR1643181 1 0.3907 0.747 0.828 0.000 0.140 0.032
#> SRR1643182 1 0.3958 0.741 0.824 0.000 0.144 0.032
#> SRR1643183 1 0.1059 0.869 0.972 0.000 0.012 0.016
#> SRR1643184 1 0.1059 0.869 0.972 0.000 0.012 0.016
#> SRR1643185 1 0.1059 0.869 0.972 0.000 0.012 0.016
#> SRR1643186 1 0.1059 0.869 0.972 0.000 0.012 0.016
#> SRR1643187 1 0.5592 0.441 0.656 0.000 0.300 0.044
#> SRR1643188 1 0.5592 0.441 0.656 0.000 0.300 0.044
#> SRR1643189 1 0.5592 0.441 0.656 0.000 0.300 0.044
#> SRR1643190 1 0.5592 0.441 0.656 0.000 0.300 0.044
#> SRR1643191 3 0.4838 0.529 0.252 0.000 0.724 0.024
#> SRR1643192 3 0.4838 0.529 0.252 0.000 0.724 0.024
#> SRR1643193 1 0.3542 0.755 0.852 0.000 0.120 0.028
#> SRR1643194 1 0.3485 0.756 0.856 0.000 0.116 0.028
#> SRR1643195 1 0.5470 0.573 0.736 0.000 0.116 0.148
#> SRR1643196 1 0.5314 0.598 0.748 0.000 0.108 0.144
#> SRR1643197 1 0.1284 0.867 0.964 0.000 0.024 0.012
#> SRR1643198 1 0.1174 0.868 0.968 0.000 0.020 0.012
#> SRR1643199 1 0.2313 0.845 0.924 0.000 0.032 0.044
#> SRR1643200 1 0.2313 0.845 0.924 0.000 0.032 0.044
#> SRR1643201 1 0.6275 0.388 0.640 0.000 0.256 0.104
#> SRR1643202 1 0.6248 0.390 0.640 0.000 0.260 0.100
#> SRR1643203 1 0.5284 0.504 0.696 0.000 0.264 0.040
#> SRR1643204 1 0.5200 0.507 0.700 0.000 0.264 0.036
#> SRR1643205 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643206 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643207 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643208 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643209 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643210 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643211 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643212 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643213 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643214 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643215 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643216 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643217 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643218 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643219 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643220 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643221 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643222 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643223 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643224 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643225 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643226 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643227 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643228 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643229 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643230 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643231 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643232 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643233 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643234 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643235 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643236 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643237 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643238 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643239 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643240 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643241 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643242 3 0.2760 0.828 0.000 0.000 0.872 0.128
#> SRR1643243 3 0.4222 0.856 0.000 0.000 0.728 0.272
#> SRR1643245 3 0.4250 0.859 0.000 0.000 0.724 0.276
#> SRR1643246 3 0.4250 0.859 0.000 0.000 0.724 0.276
#> SRR1643247 3 0.4250 0.859 0.000 0.000 0.724 0.276
#> SRR1643248 3 0.4605 0.870 0.000 0.000 0.664 0.336
#> SRR1643249 3 0.1867 0.811 0.000 0.000 0.928 0.072
#> SRR1643250 4 0.5253 0.965 0.360 0.000 0.016 0.624
#> SRR1643251 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643252 4 0.4936 0.986 0.372 0.000 0.004 0.624
#> SRR1643253 4 0.4790 0.990 0.380 0.000 0.000 0.620
#> SRR1643254 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643255 4 0.5159 0.972 0.364 0.000 0.012 0.624
#> SRR1643256 4 0.4790 0.990 0.380 0.000 0.000 0.620
#> SRR1643257 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643258 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643259 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643260 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643261 4 0.5253 0.965 0.360 0.000 0.016 0.624
#> SRR1643262 4 0.4804 0.987 0.384 0.000 0.000 0.616
#> SRR1643263 4 0.4790 0.990 0.380 0.000 0.000 0.620
#> SRR1643264 4 0.4817 0.981 0.388 0.000 0.000 0.612
#> SRR1643266 4 0.4804 0.987 0.384 0.000 0.000 0.616
#> SRR1643267 4 0.4817 0.981 0.388 0.000 0.000 0.612
#> SRR1643268 4 0.4817 0.981 0.388 0.000 0.000 0.612
#> SRR1643269 4 0.4804 0.987 0.384 0.000 0.000 0.616
#> SRR1643270 4 0.4855 0.960 0.400 0.000 0.000 0.600
#> SRR1643271 4 0.4790 0.990 0.380 0.000 0.000 0.620
#> SRR1643272 4 0.4804 0.987 0.384 0.000 0.000 0.616
#> SRR1643273 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643274 1 0.0592 0.870 0.984 0.000 0.000 0.016
#> SRR1643275 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643276 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643277 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643278 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643279 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643280 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643281 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643282 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643283 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643284 1 0.0336 0.871 0.992 0.000 0.000 0.008
#> SRR1643285 1 0.0592 0.870 0.984 0.000 0.000 0.016
#> SRR1643286 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643287 1 0.3726 0.523 0.788 0.000 0.000 0.212
#> SRR1643288 1 0.3801 0.508 0.780 0.000 0.000 0.220
#> SRR1643289 1 0.3764 0.514 0.784 0.000 0.000 0.216
#> SRR1643290 1 0.3764 0.514 0.784 0.000 0.000 0.216
#> SRR1643291 1 0.3801 0.508 0.780 0.000 0.000 0.220
#> SRR1643292 1 0.3726 0.523 0.788 0.000 0.000 0.212
#> SRR1643293 1 0.3688 0.534 0.792 0.000 0.000 0.208
#> SRR1643294 1 0.3764 0.514 0.784 0.000 0.000 0.216
#> SRR1643295 1 0.3764 0.514 0.784 0.000 0.000 0.216
#> SRR1643296 1 0.3688 0.534 0.792 0.000 0.000 0.208
#> SRR1643297 1 0.3726 0.523 0.788 0.000 0.000 0.212
#> SRR1643298 1 0.3726 0.523 0.788 0.000 0.000 0.212
#> SRR1643299 1 0.3726 0.523 0.788 0.000 0.000 0.212
#> SRR1643300 1 0.3726 0.523 0.788 0.000 0.000 0.212
#> SRR1643301 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643302 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643303 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643304 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643305 1 0.0592 0.870 0.984 0.000 0.000 0.016
#> SRR1643306 1 0.0921 0.866 0.972 0.000 0.000 0.028
#> SRR1643307 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643308 1 0.0592 0.870 0.984 0.000 0.000 0.016
#> SRR1643309 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643310 1 0.0592 0.870 0.984 0.000 0.000 0.016
#> SRR1643311 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643312 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643313 1 0.0469 0.870 0.988 0.000 0.000 0.012
#> SRR1643314 1 0.0000 0.872 1.000 0.000 0.000 0.000
#> SRR1643315 1 0.0000 0.872 1.000 0.000 0.000 0.000
#> SRR1643316 1 0.0000 0.872 1.000 0.000 0.000 0.000
#> SRR1643317 1 0.0000 0.872 1.000 0.000 0.000 0.000
#> SRR1643318 1 0.0000 0.872 1.000 0.000 0.000 0.000
#> SRR1643319 1 0.0000 0.872 1.000 0.000 0.000 0.000
#> SRR1643320 1 0.0000 0.872 1.000 0.000 0.000 0.000
#> SRR1643321 1 0.0000 0.872 1.000 0.000 0.000 0.000
#> SRR1643322 1 0.0000 0.872 1.000 0.000 0.000 0.000
#> SRR1643323 1 0.0000 0.872 1.000 0.000 0.000 0.000
#> SRR1643324 1 0.0000 0.872 1.000 0.000 0.000 0.000
#> SRR1643325 1 0.0000 0.872 1.000 0.000 0.000 0.000
#> SRR1643326 1 0.0000 0.872 1.000 0.000 0.000 0.000
#> SRR1643327 1 0.0000 0.872 1.000 0.000 0.000 0.000
#> SRR1643328 1 0.0188 0.872 0.996 0.000 0.000 0.004
#> SRR1643329 1 0.0188 0.872 0.996 0.000 0.000 0.004
#> SRR1643330 1 0.0188 0.872 0.996 0.000 0.000 0.004
#> SRR1643331 1 0.0188 0.872 0.996 0.000 0.000 0.004
#> SRR1643332 1 0.0188 0.872 0.996 0.000 0.000 0.004
#> SRR1643333 1 0.0188 0.872 0.996 0.000 0.000 0.004
#> SRR1643334 1 0.0188 0.872 0.996 0.000 0.000 0.004
#> SRR1643335 1 0.0188 0.872 0.996 0.000 0.000 0.004
#> SRR1643336 1 0.0188 0.872 0.996 0.000 0.000 0.004
#> SRR1643337 1 0.0188 0.872 0.996 0.000 0.000 0.004
#> SRR1643338 1 0.0188 0.872 0.996 0.000 0.000 0.004
#> SRR1643339 1 0.0188 0.872 0.996 0.000 0.000 0.004
#> SRR1643340 1 0.0188 0.872 0.996 0.000 0.000 0.004
#> SRR1643341 1 0.0188 0.872 0.996 0.000 0.000 0.004
#> SRR1643342 1 0.0188 0.872 0.996 0.000 0.000 0.004
#> SRR1643343 1 0.3505 0.803 0.864 0.000 0.088 0.048
#> SRR1643344 1 0.3505 0.803 0.864 0.000 0.088 0.048
#> SRR1643345 1 0.3505 0.803 0.864 0.000 0.088 0.048
#> SRR1643346 1 0.3505 0.803 0.864 0.000 0.088 0.048
#> SRR1643347 1 0.3505 0.803 0.864 0.000 0.088 0.048
#> SRR1643348 1 0.3505 0.803 0.864 0.000 0.088 0.048
#> SRR1643349 1 0.3505 0.803 0.864 0.000 0.088 0.048
#> SRR1643350 1 0.3505 0.803 0.864 0.000 0.088 0.048
#> SRR1643351 1 0.3505 0.803 0.864 0.000 0.088 0.048
#> SRR1643352 1 0.3505 0.803 0.864 0.000 0.088 0.048
#> SRR1643353 1 0.3505 0.803 0.864 0.000 0.088 0.048
#> SRR1643354 1 0.3505 0.803 0.864 0.000 0.088 0.048
#> SRR1643355 1 0.3505 0.803 0.864 0.000 0.088 0.048
#> SRR1643356 1 0.3505 0.803 0.864 0.000 0.088 0.048
#> SRR1643357 1 0.3505 0.803 0.864 0.000 0.088 0.048
#> SRR1643358 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643359 4 0.4804 0.985 0.384 0.000 0.000 0.616
#> SRR1643360 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643361 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643362 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643363 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643364 1 0.5807 -0.122 0.612 0.000 0.044 0.344
#> SRR1643365 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643366 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643367 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643368 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643369 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643370 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643371 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643372 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643373 4 0.4790 0.990 0.380 0.000 0.000 0.620
#> SRR1643374 4 0.4790 0.990 0.380 0.000 0.000 0.620
#> SRR1643375 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643376 4 0.4790 0.990 0.380 0.000 0.000 0.620
#> SRR1643377 4 0.4790 0.990 0.380 0.000 0.000 0.620
#> SRR1643378 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643379 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643380 4 0.4790 0.990 0.380 0.000 0.000 0.620
#> SRR1643381 1 0.5902 0.470 0.700 0.000 0.160 0.140
#> SRR1643382 4 0.4790 0.990 0.380 0.000 0.000 0.620
#> SRR1643383 4 0.4817 0.980 0.388 0.000 0.000 0.612
#> SRR1643384 4 0.4790 0.990 0.380 0.000 0.000 0.620
#> SRR1643385 4 0.4790 0.986 0.380 0.000 0.000 0.620
#> SRR1643386 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643387 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643388 4 0.4790 0.990 0.380 0.000 0.000 0.620
#> SRR1643389 4 0.4776 0.992 0.376 0.000 0.000 0.624
#> SRR1643390 1 0.0469 0.872 0.988 0.000 0.000 0.012
#> SRR1643391 1 0.0336 0.871 0.992 0.000 0.000 0.008
#> SRR1643392 1 0.0336 0.871 0.992 0.000 0.000 0.008
#> SRR1643393 1 0.0336 0.871 0.992 0.000 0.000 0.008
#> SRR1643394 1 0.0336 0.871 0.992 0.000 0.000 0.008
#> SRR1643395 1 0.0336 0.871 0.992 0.000 0.000 0.008
#> SRR1643396 1 0.1297 0.869 0.964 0.000 0.016 0.020
#> SRR1643397 1 0.0336 0.871 0.992 0.000 0.000 0.008
#> SRR1643398 1 0.0469 0.872 0.988 0.000 0.000 0.012
#> SRR1643399 1 0.0336 0.871 0.992 0.000 0.000 0.008
#> SRR1643400 1 0.0336 0.871 0.992 0.000 0.000 0.008
#> SRR1643401 1 0.0336 0.871 0.992 0.000 0.000 0.008
#> SRR1643402 1 0.0336 0.871 0.992 0.000 0.000 0.008
#> SRR1643403 1 0.0336 0.871 0.992 0.000 0.000 0.008
#> SRR1643404 1 0.0469 0.872 0.988 0.000 0.000 0.012
#> SRR1643405 1 0.2413 0.841 0.916 0.000 0.064 0.020
#> SRR1643406 1 0.2413 0.841 0.916 0.000 0.064 0.020
#> SRR1643407 1 0.2413 0.841 0.916 0.000 0.064 0.020
#> SRR1643408 1 0.2413 0.841 0.916 0.000 0.064 0.020
#> SRR1643409 1 0.2413 0.841 0.916 0.000 0.064 0.020
#> SRR1643410 1 0.2413 0.841 0.916 0.000 0.064 0.020
#> SRR1643411 1 0.2413 0.841 0.916 0.000 0.064 0.020
#> SRR1643412 1 0.2413 0.841 0.916 0.000 0.064 0.020
#> SRR1643413 1 0.2413 0.841 0.916 0.000 0.064 0.020
#> SRR1643414 1 0.2413 0.841 0.916 0.000 0.064 0.020
#> SRR1643415 1 0.2413 0.841 0.916 0.000 0.064 0.020
#> SRR1643416 1 0.2413 0.841 0.916 0.000 0.064 0.020
#> SRR1643417 1 0.2413 0.841 0.916 0.000 0.064 0.020
#> SRR1643418 3 0.2124 0.790 0.040 0.000 0.932 0.028
#> SRR1643419 3 0.2124 0.790 0.040 0.000 0.932 0.028
#> SRR1643420 3 0.2124 0.790 0.040 0.000 0.932 0.028
#> SRR1643421 3 0.2124 0.790 0.040 0.000 0.932 0.028
#> SRR1643422 3 0.2124 0.790 0.040 0.000 0.932 0.028
#> SRR1643423 3 0.2124 0.790 0.040 0.000 0.932 0.028
#> SRR1643424 3 0.2124 0.790 0.040 0.000 0.932 0.028
#> SRR1643425 3 0.2124 0.790 0.040 0.000 0.932 0.028
#> SRR1643426 3 0.2124 0.790 0.040 0.000 0.932 0.028
#> SRR1643427 3 0.2124 0.790 0.040 0.000 0.932 0.028
#> SRR1643428 3 0.2124 0.790 0.040 0.000 0.932 0.028
#> SRR1643429 3 0.2124 0.790 0.040 0.000 0.932 0.028
#> SRR1643430 3 0.2363 0.783 0.056 0.000 0.920 0.024
#> SRR1643431 3 0.2363 0.783 0.056 0.000 0.920 0.024
#> SRR1643432 3 0.2363 0.783 0.056 0.000 0.920 0.024
#> SRR1643433 3 0.2363 0.783 0.056 0.000 0.920 0.024
#> SRR1643434 3 0.2363 0.783 0.056 0.000 0.920 0.024
#> SRR1643435 3 0.2363 0.783 0.056 0.000 0.920 0.024
#> SRR1643436 3 0.2363 0.783 0.056 0.000 0.920 0.024
#> SRR1643437 3 0.2363 0.783 0.056 0.000 0.920 0.024
#> SRR1643438 3 0.2363 0.783 0.056 0.000 0.920 0.024
#> SRR1643439 3 0.2363 0.783 0.056 0.000 0.920 0.024
#> SRR1643440 3 0.2363 0.783 0.056 0.000 0.920 0.024
#> SRR1643441 3 0.2363 0.783 0.056 0.000 0.920 0.024
#> SRR1643442 3 0.2363 0.783 0.056 0.000 0.920 0.024
#> SRR1643443 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643444 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643445 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643446 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643447 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643448 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643449 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643450 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643451 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643452 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643453 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643454 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643455 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643456 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643457 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643458 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643459 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643460 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643461 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643462 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643463 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643464 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643466 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643467 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643468 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643469 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643470 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643471 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643472 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643473 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643474 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643475 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643477 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643478 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643479 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643480 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643481 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643482 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643483 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643484 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643485 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643486 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643487 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643488 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643489 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643490 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643491 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643492 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643493 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643494 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643495 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643496 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643497 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643498 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643499 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643500 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643501 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643502 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643503 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643504 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643505 2 0.0336 0.993 0.000 0.992 0.008 0.000
#> SRR1643506 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643507 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643508 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643509 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643510 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643511 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643512 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643513 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643531 2 0.0336 0.993 0.000 0.992 0.008 0.000
#> SRR1643532 2 0.0336 0.993 0.000 0.992 0.008 0.000
#> SRR1643533 2 0.0336 0.993 0.000 0.992 0.008 0.000
#> SRR1643534 2 0.0336 0.993 0.000 0.992 0.008 0.000
#> SRR1643535 2 0.0336 0.993 0.000 0.992 0.008 0.000
#> SRR1643536 2 0.0336 0.993 0.000 0.992 0.008 0.000
#> SRR1643537 2 0.0336 0.993 0.000 0.992 0.008 0.000
#> SRR1643538 2 0.0336 0.993 0.000 0.992 0.008 0.000
#> SRR1643539 2 0.0336 0.993 0.000 0.992 0.008 0.000
#> SRR1643540 2 0.0336 0.993 0.000 0.992 0.008 0.000
#> SRR1643541 2 0.0336 0.993 0.000 0.992 0.008 0.000
#> SRR1643542 2 0.0336 0.993 0.000 0.992 0.008 0.000
#> SRR1643543 2 0.0336 0.993 0.000 0.992 0.008 0.000
#> SRR1643544 2 0.0336 0.993 0.000 0.992 0.008 0.000
#> SRR1643514 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643515 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643516 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643517 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643518 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643519 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643520 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643521 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643522 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643523 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643524 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643525 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643526 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643527 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643528 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643529 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643530 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643545 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643546 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643547 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643548 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643549 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643550 2 0.0336 0.993 0.000 0.992 0.008 0.000
#> SRR1643551 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643552 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643553 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643554 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643555 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643556 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643558 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643559 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643560 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643561 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643562 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643563 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643564 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643565 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643566 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643567 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643568 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643569 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643570 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643571 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643572 2 0.0000 0.999 0.000 1.000 0.000 0.000
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 1 0.3722 0.807 0.824 0.000 0.032 0.128 0.016
#> SRR1643168 1 0.3675 0.811 0.828 0.000 0.032 0.124 0.016
#> SRR1643169 1 0.3675 0.811 0.828 0.000 0.032 0.124 0.016
#> SRR1643170 1 0.3675 0.811 0.828 0.000 0.032 0.124 0.016
#> SRR1643171 1 0.0932 0.874 0.972 0.000 0.004 0.020 0.004
#> SRR1643172 1 0.0932 0.874 0.972 0.000 0.004 0.020 0.004
#> SRR1643173 1 0.0932 0.874 0.972 0.000 0.004 0.020 0.004
#> SRR1643174 1 0.0932 0.874 0.972 0.000 0.004 0.020 0.004
#> SRR1643175 1 0.4152 0.816 0.816 0.000 0.036 0.060 0.088
#> SRR1643176 1 0.4152 0.816 0.816 0.000 0.036 0.060 0.088
#> SRR1643177 1 0.4152 0.816 0.816 0.000 0.036 0.060 0.088
#> SRR1643178 1 0.4152 0.816 0.816 0.000 0.036 0.060 0.088
#> SRR1643180 1 0.4849 0.743 0.756 0.000 0.136 0.084 0.024
#> SRR1643181 1 0.4891 0.738 0.752 0.000 0.140 0.084 0.024
#> SRR1643182 1 0.4932 0.733 0.748 0.000 0.144 0.084 0.024
#> SRR1643183 1 0.1591 0.865 0.940 0.000 0.004 0.052 0.004
#> SRR1643184 1 0.1443 0.868 0.948 0.000 0.004 0.044 0.004
#> SRR1643185 1 0.1591 0.865 0.940 0.000 0.004 0.052 0.004
#> SRR1643186 1 0.1518 0.866 0.944 0.000 0.004 0.048 0.004
#> SRR1643187 1 0.5656 0.681 0.696 0.000 0.140 0.128 0.036
#> SRR1643188 1 0.5656 0.681 0.696 0.000 0.140 0.128 0.036
#> SRR1643189 1 0.5656 0.681 0.696 0.000 0.140 0.128 0.036
#> SRR1643190 1 0.5656 0.681 0.696 0.000 0.140 0.128 0.036
#> SRR1643191 3 0.7502 -0.232 0.364 0.000 0.424 0.108 0.104
#> SRR1643192 3 0.7502 -0.232 0.364 0.000 0.424 0.108 0.104
#> SRR1643193 1 0.3093 0.836 0.872 0.000 0.032 0.080 0.016
#> SRR1643194 1 0.3174 0.833 0.868 0.000 0.036 0.080 0.016
#> SRR1643195 1 0.6504 0.418 0.564 0.000 0.168 0.248 0.020
#> SRR1643196 1 0.6418 0.423 0.568 0.000 0.168 0.248 0.016
#> SRR1643197 1 0.1885 0.870 0.936 0.000 0.020 0.032 0.012
#> SRR1643198 1 0.1989 0.870 0.932 0.000 0.020 0.032 0.016
#> SRR1643199 1 0.3775 0.816 0.832 0.000 0.060 0.092 0.016
#> SRR1643200 1 0.3763 0.816 0.832 0.000 0.056 0.096 0.016
#> SRR1643201 1 0.6535 0.493 0.588 0.000 0.172 0.208 0.032
#> SRR1643202 1 0.6535 0.493 0.588 0.000 0.172 0.208 0.032
#> SRR1643203 1 0.5407 0.699 0.716 0.000 0.152 0.096 0.036
#> SRR1643204 1 0.5331 0.703 0.720 0.000 0.152 0.096 0.032
#> SRR1643205 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643206 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643207 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643208 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643209 3 0.0162 0.919 0.000 0.000 0.996 0.000 0.004
#> SRR1643210 3 0.0162 0.919 0.000 0.000 0.996 0.000 0.004
#> SRR1643211 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643212 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643213 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643214 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643215 3 0.0162 0.919 0.000 0.000 0.996 0.000 0.004
#> SRR1643216 3 0.0162 0.919 0.000 0.000 0.996 0.000 0.004
#> SRR1643217 3 0.0162 0.919 0.000 0.000 0.996 0.000 0.004
#> SRR1643218 3 0.0162 0.919 0.000 0.000 0.996 0.000 0.004
#> SRR1643219 3 0.0162 0.919 0.000 0.000 0.996 0.000 0.004
#> SRR1643220 3 0.0162 0.919 0.000 0.000 0.996 0.000 0.004
#> SRR1643221 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643222 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643223 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643224 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643225 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643226 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643227 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643228 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643229 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643230 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643231 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643232 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643233 3 0.0324 0.916 0.000 0.000 0.992 0.004 0.004
#> SRR1643234 3 0.0324 0.916 0.000 0.000 0.992 0.004 0.004
#> SRR1643235 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643236 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643237 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643238 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643239 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643240 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643241 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643242 3 0.2438 0.789 0.000 0.000 0.900 0.040 0.060
#> SRR1643243 3 0.1549 0.863 0.000 0.000 0.944 0.040 0.016
#> SRR1643245 3 0.1836 0.842 0.000 0.000 0.932 0.032 0.036
#> SRR1643246 3 0.1836 0.842 0.000 0.000 0.932 0.032 0.036
#> SRR1643247 3 0.1836 0.842 0.000 0.000 0.932 0.032 0.036
#> SRR1643248 3 0.0000 0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643249 3 0.5890 0.176 0.104 0.000 0.696 0.096 0.104
#> SRR1643250 4 0.3039 0.970 0.152 0.000 0.000 0.836 0.012
#> SRR1643251 4 0.2930 0.983 0.164 0.000 0.000 0.832 0.004
#> SRR1643252 4 0.2971 0.975 0.156 0.000 0.000 0.836 0.008
#> SRR1643253 4 0.2929 0.970 0.180 0.000 0.000 0.820 0.000
#> SRR1643254 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643255 4 0.3098 0.963 0.148 0.000 0.000 0.836 0.016
#> SRR1643256 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643257 4 0.3039 0.970 0.152 0.000 0.000 0.836 0.012
#> SRR1643258 4 0.3013 0.978 0.160 0.000 0.000 0.832 0.008
#> SRR1643259 4 0.3039 0.970 0.152 0.000 0.000 0.836 0.012
#> SRR1643260 4 0.2971 0.975 0.156 0.000 0.000 0.836 0.008
#> SRR1643261 4 0.3151 0.957 0.144 0.000 0.000 0.836 0.020
#> SRR1643262 4 0.2773 0.984 0.164 0.000 0.000 0.836 0.000
#> SRR1643263 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643264 4 0.2813 0.982 0.168 0.000 0.000 0.832 0.000
#> SRR1643266 4 0.2773 0.984 0.164 0.000 0.000 0.836 0.000
#> SRR1643267 4 0.2813 0.983 0.168 0.000 0.000 0.832 0.000
#> SRR1643268 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643269 4 0.2773 0.984 0.164 0.000 0.000 0.836 0.000
#> SRR1643270 4 0.2891 0.973 0.176 0.000 0.000 0.824 0.000
#> SRR1643271 4 0.2773 0.984 0.164 0.000 0.000 0.836 0.000
#> SRR1643272 4 0.2773 0.984 0.164 0.000 0.000 0.836 0.000
#> SRR1643273 1 0.1018 0.872 0.968 0.000 0.000 0.016 0.016
#> SRR1643274 1 0.1211 0.872 0.960 0.000 0.000 0.024 0.016
#> SRR1643275 1 0.1216 0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643276 1 0.0912 0.872 0.972 0.000 0.000 0.012 0.016
#> SRR1643277 1 0.1018 0.872 0.968 0.000 0.000 0.016 0.016
#> SRR1643278 1 0.1117 0.872 0.964 0.000 0.000 0.016 0.020
#> SRR1643279 1 0.1117 0.872 0.964 0.000 0.000 0.016 0.020
#> SRR1643280 1 0.1117 0.872 0.964 0.000 0.000 0.016 0.020
#> SRR1643281 1 0.1117 0.872 0.964 0.000 0.000 0.016 0.020
#> SRR1643282 1 0.1117 0.872 0.964 0.000 0.000 0.016 0.020
#> SRR1643283 1 0.1117 0.872 0.964 0.000 0.000 0.016 0.020
#> SRR1643284 1 0.1012 0.872 0.968 0.000 0.000 0.012 0.020
#> SRR1643285 1 0.1300 0.871 0.956 0.000 0.000 0.028 0.016
#> SRR1643286 1 0.1117 0.872 0.964 0.000 0.000 0.016 0.020
#> SRR1643287 1 0.3988 0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643288 1 0.4090 0.580 0.716 0.000 0.000 0.268 0.016
#> SRR1643289 1 0.3988 0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643290 1 0.4014 0.594 0.728 0.000 0.000 0.256 0.016
#> SRR1643291 1 0.4040 0.589 0.724 0.000 0.000 0.260 0.016
#> SRR1643292 1 0.3988 0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643293 1 0.3988 0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643294 1 0.3988 0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643295 1 0.3988 0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643296 1 0.3988 0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643297 1 0.4040 0.590 0.724 0.000 0.000 0.260 0.016
#> SRR1643298 1 0.3988 0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643299 1 0.3988 0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643300 1 0.3988 0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643301 1 0.1216 0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643302 1 0.1216 0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643303 1 0.1216 0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643304 1 0.1216 0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643305 1 0.1216 0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643306 1 0.2079 0.858 0.916 0.000 0.000 0.064 0.020
#> SRR1643307 1 0.1216 0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643308 1 0.1216 0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643309 1 0.1216 0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643310 1 0.1216 0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643311 1 0.1216 0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643312 1 0.1216 0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643313 1 0.1117 0.871 0.964 0.000 0.000 0.020 0.016
#> SRR1643314 1 0.0771 0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643315 1 0.0771 0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643316 1 0.0771 0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643317 1 0.0671 0.873 0.980 0.000 0.000 0.004 0.016
#> SRR1643318 1 0.0771 0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643319 1 0.0771 0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643320 1 0.0898 0.872 0.972 0.000 0.000 0.008 0.020
#> SRR1643321 1 0.0771 0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643322 1 0.0771 0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643323 1 0.0771 0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643324 1 0.0771 0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643325 1 0.0771 0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643326 1 0.0771 0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643327 1 0.0771 0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643328 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643329 1 0.0290 0.873 0.992 0.000 0.000 0.000 0.008
#> SRR1643330 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643331 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643332 1 0.0290 0.873 0.992 0.000 0.000 0.000 0.008
#> SRR1643333 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643334 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643335 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643336 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643337 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643338 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643339 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643340 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643341 1 0.0290 0.873 0.992 0.000 0.000 0.000 0.008
#> SRR1643342 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643343 1 0.3942 0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643344 1 0.3942 0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643345 1 0.3942 0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643346 1 0.3942 0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643347 1 0.3942 0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643348 1 0.3942 0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643349 1 0.3942 0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643350 1 0.3942 0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643351 1 0.3942 0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643352 1 0.3942 0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643353 1 0.3942 0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643354 1 0.3942 0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643355 1 0.3942 0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643356 1 0.3942 0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643357 1 0.3942 0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643358 4 0.2970 0.983 0.168 0.000 0.000 0.828 0.004
#> SRR1643359 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643360 4 0.2970 0.983 0.168 0.000 0.000 0.828 0.004
#> SRR1643361 4 0.2773 0.984 0.164 0.000 0.000 0.836 0.000
#> SRR1643362 4 0.2930 0.983 0.164 0.000 0.000 0.832 0.004
#> SRR1643363 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643364 4 0.5440 0.420 0.396 0.000 0.064 0.540 0.000
#> SRR1643365 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643366 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643367 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643368 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643369 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643370 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643371 4 0.2970 0.983 0.168 0.000 0.000 0.828 0.004
#> SRR1643372 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643373 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643374 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643375 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643376 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643377 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643378 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643379 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643380 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643381 1 0.5442 0.552 0.644 0.000 0.116 0.240 0.000
#> SRR1643382 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643383 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643384 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643385 4 0.2773 0.984 0.164 0.000 0.000 0.836 0.000
#> SRR1643386 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643387 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643388 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643389 4 0.2813 0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643390 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643391 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643392 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643393 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643394 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643395 1 0.0324 0.874 0.992 0.000 0.000 0.004 0.004
#> SRR1643396 1 0.1356 0.871 0.956 0.000 0.012 0.028 0.004
#> SRR1643397 1 0.0324 0.874 0.992 0.000 0.000 0.004 0.004
#> SRR1643398 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643399 1 0.0324 0.874 0.992 0.000 0.000 0.004 0.004
#> SRR1643400 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643401 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643402 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643403 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643404 1 0.0162 0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643405 1 0.3523 0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643406 1 0.3523 0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643407 1 0.3523 0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643408 1 0.3523 0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643409 1 0.3523 0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643410 1 0.3523 0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643411 1 0.3523 0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643412 1 0.3523 0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643413 1 0.3523 0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643414 1 0.3523 0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643415 1 0.3523 0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643416 1 0.3523 0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643417 1 0.3523 0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643418 5 0.6015 0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643419 5 0.6015 0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643420 5 0.6015 0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643421 5 0.6015 0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643422 5 0.6015 0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643423 5 0.6015 0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643424 5 0.6015 0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643425 5 0.6015 0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643426 5 0.6015 0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643427 5 0.6015 0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643428 5 0.6015 0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643429 5 0.6015 0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643430 5 0.6267 0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643431 5 0.6267 0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643432 5 0.6267 0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643433 5 0.6267 0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643434 5 0.6267 0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643435 5 0.6267 0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643436 5 0.6267 0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643437 5 0.6267 0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643438 5 0.6267 0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643439 5 0.6267 0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643440 5 0.6267 0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643441 5 0.6267 0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643442 5 0.6267 0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643443 2 0.0880 0.912 0.000 0.968 0.000 0.000 0.032
#> SRR1643444 2 0.1043 0.912 0.000 0.960 0.000 0.000 0.040
#> SRR1643445 2 0.0880 0.912 0.000 0.968 0.000 0.000 0.032
#> SRR1643446 2 0.0880 0.912 0.000 0.968 0.000 0.000 0.032
#> SRR1643447 2 0.0794 0.912 0.000 0.972 0.000 0.000 0.028
#> SRR1643448 2 0.0703 0.912 0.000 0.976 0.000 0.000 0.024
#> SRR1643449 2 0.0880 0.912 0.000 0.968 0.000 0.000 0.032
#> SRR1643450 2 0.0794 0.912 0.000 0.972 0.000 0.000 0.028
#> SRR1643451 2 0.0880 0.912 0.000 0.968 0.000 0.000 0.032
#> SRR1643452 2 0.0880 0.912 0.000 0.968 0.000 0.000 0.032
#> SRR1643453 2 0.0880 0.912 0.000 0.968 0.000 0.000 0.032
#> SRR1643454 2 0.0880 0.912 0.000 0.968 0.000 0.000 0.032
#> SRR1643455 2 0.0794 0.912 0.000 0.972 0.000 0.000 0.028
#> SRR1643456 2 0.1121 0.912 0.000 0.956 0.000 0.000 0.044
#> SRR1643457 2 0.0794 0.914 0.000 0.972 0.000 0.000 0.028
#> SRR1643458 2 0.0510 0.913 0.000 0.984 0.000 0.000 0.016
#> SRR1643459 2 0.0290 0.914 0.000 0.992 0.000 0.000 0.008
#> SRR1643460 2 0.0703 0.914 0.000 0.976 0.000 0.000 0.024
#> SRR1643461 2 0.0794 0.914 0.000 0.972 0.000 0.000 0.028
#> SRR1643462 2 0.0963 0.913 0.000 0.964 0.000 0.000 0.036
#> SRR1643463 2 0.0963 0.913 0.000 0.964 0.000 0.000 0.036
#> SRR1643464 2 0.0963 0.913 0.000 0.964 0.000 0.000 0.036
#> SRR1643466 2 0.1121 0.912 0.000 0.956 0.000 0.000 0.044
#> SRR1643467 2 0.0609 0.914 0.000 0.980 0.000 0.000 0.020
#> SRR1643468 2 0.0963 0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643469 2 0.0963 0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643470 2 0.0963 0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643471 2 0.0963 0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643472 2 0.0963 0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643473 2 0.1043 0.912 0.000 0.960 0.000 0.000 0.040
#> SRR1643474 2 0.0963 0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643475 2 0.0963 0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643477 2 0.0963 0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643478 2 0.0963 0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643479 2 0.0963 0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643480 2 0.0963 0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643481 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643482 2 0.1851 0.899 0.000 0.912 0.000 0.000 0.088
#> SRR1643483 2 0.1965 0.897 0.000 0.904 0.000 0.000 0.096
#> SRR1643484 2 0.1965 0.897 0.000 0.904 0.000 0.000 0.096
#> SRR1643485 2 0.1965 0.897 0.000 0.904 0.000 0.000 0.096
#> SRR1643486 2 0.1965 0.897 0.000 0.904 0.000 0.000 0.096
#> SRR1643487 2 0.1965 0.897 0.000 0.904 0.000 0.000 0.096
#> SRR1643488 2 0.2020 0.896 0.000 0.900 0.000 0.000 0.100
#> SRR1643489 2 0.1965 0.897 0.000 0.904 0.000 0.000 0.096
#> SRR1643490 2 0.1792 0.901 0.000 0.916 0.000 0.000 0.084
#> SRR1643491 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643492 2 0.0880 0.913 0.000 0.968 0.000 0.000 0.032
#> SRR1643493 2 0.1792 0.900 0.000 0.916 0.000 0.000 0.084
#> SRR1643494 2 0.1965 0.897 0.000 0.904 0.000 0.000 0.096
#> SRR1643495 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643496 2 0.1732 0.902 0.000 0.920 0.000 0.000 0.080
#> SRR1643497 2 0.2377 0.883 0.000 0.872 0.000 0.000 0.128
#> SRR1643498 2 0.2377 0.883 0.000 0.872 0.000 0.000 0.128
#> SRR1643499 2 0.2377 0.883 0.000 0.872 0.000 0.000 0.128
#> SRR1643500 2 0.2377 0.883 0.000 0.872 0.000 0.000 0.128
#> SRR1643501 2 0.2179 0.891 0.000 0.888 0.000 0.000 0.112
#> SRR1643502 2 0.2179 0.891 0.000 0.888 0.000 0.000 0.112
#> SRR1643503 2 0.2377 0.883 0.000 0.872 0.000 0.000 0.128
#> SRR1643504 2 0.1732 0.902 0.000 0.920 0.000 0.000 0.080
#> SRR1643505 2 0.5678 0.714 0.000 0.672 0.024 0.104 0.200
#> SRR1643506 2 0.2377 0.883 0.000 0.872 0.000 0.000 0.128
#> SRR1643507 2 0.2280 0.888 0.000 0.880 0.000 0.000 0.120
#> SRR1643508 2 0.2179 0.891 0.000 0.888 0.000 0.000 0.112
#> SRR1643509 2 0.1908 0.900 0.000 0.908 0.000 0.000 0.092
#> SRR1643510 2 0.2280 0.887 0.000 0.880 0.000 0.000 0.120
#> SRR1643511 2 0.2280 0.887 0.000 0.880 0.000 0.000 0.120
#> SRR1643512 2 0.2377 0.883 0.000 0.872 0.000 0.000 0.128
#> SRR1643513 2 0.2329 0.885 0.000 0.876 0.000 0.000 0.124
#> SRR1643531 2 0.5944 0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643532 2 0.5944 0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643533 2 0.5944 0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643534 2 0.5944 0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643535 2 0.5944 0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643536 2 0.5944 0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643537 2 0.5944 0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643538 2 0.5944 0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643539 2 0.5944 0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643540 2 0.5944 0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643541 2 0.5944 0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643542 2 0.5944 0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643543 2 0.5944 0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643544 2 0.5944 0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643514 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643515 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643516 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643517 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643518 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643519 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643520 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643521 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643522 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643523 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643524 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643525 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643526 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643527 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643528 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643529 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643530 2 0.1908 0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643545 2 0.1341 0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643546 2 0.1341 0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643547 2 0.1341 0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643548 2 0.1341 0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643549 2 0.1341 0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643550 2 0.2139 0.909 0.000 0.920 0.012 0.012 0.056
#> SRR1643551 2 0.1341 0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643552 2 0.1341 0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643553 2 0.1341 0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643554 2 0.1341 0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643555 2 0.1341 0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643556 2 0.1341 0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643558 2 0.1341 0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643559 2 0.1478 0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643560 2 0.1478 0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643561 2 0.1478 0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643562 2 0.1478 0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643563 2 0.1478 0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643564 2 0.1571 0.909 0.000 0.936 0.000 0.004 0.060
#> SRR1643565 2 0.1478 0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643566 2 0.1478 0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643567 2 0.1478 0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643568 2 0.1478 0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643569 2 0.1478 0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643570 2 0.1478 0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643571 2 0.1478 0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643572 2 0.1478 0.908 0.000 0.936 0.000 0.000 0.064
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 1 0.4325 0.735 0.736 0.000 0.016 0.208 0.020 0.020
#> SRR1643168 1 0.4352 0.733 0.732 0.000 0.016 0.212 0.020 0.020
#> SRR1643169 1 0.4352 0.733 0.732 0.000 0.016 0.212 0.020 0.020
#> SRR1643170 1 0.4352 0.733 0.732 0.000 0.016 0.212 0.020 0.020
#> SRR1643171 1 0.1870 0.839 0.928 0.000 0.004 0.044 0.012 0.012
#> SRR1643172 1 0.1801 0.839 0.932 0.000 0.004 0.040 0.012 0.012
#> SRR1643173 1 0.1801 0.839 0.932 0.000 0.004 0.040 0.012 0.012
#> SRR1643174 1 0.1801 0.839 0.932 0.000 0.004 0.040 0.012 0.012
#> SRR1643175 1 0.5037 0.763 0.732 0.000 0.016 0.044 0.100 0.108
#> SRR1643176 1 0.5037 0.763 0.732 0.000 0.016 0.044 0.100 0.108
#> SRR1643177 1 0.5099 0.763 0.728 0.000 0.016 0.048 0.100 0.108
#> SRR1643178 1 0.5037 0.763 0.732 0.000 0.016 0.044 0.100 0.108
#> SRR1643180 1 0.4887 0.736 0.724 0.000 0.064 0.168 0.016 0.028
#> SRR1643181 1 0.4941 0.733 0.720 0.000 0.068 0.168 0.016 0.028
#> SRR1643182 1 0.4941 0.733 0.720 0.000 0.068 0.168 0.016 0.028
#> SRR1643183 1 0.2390 0.835 0.900 0.000 0.004 0.060 0.012 0.024
#> SRR1643184 1 0.2390 0.835 0.900 0.000 0.004 0.060 0.012 0.024
#> SRR1643185 1 0.2390 0.835 0.900 0.000 0.004 0.060 0.012 0.024
#> SRR1643186 1 0.2390 0.835 0.900 0.000 0.004 0.060 0.012 0.024
#> SRR1643187 1 0.5413 0.708 0.676 0.000 0.072 0.192 0.012 0.048
#> SRR1643188 1 0.5413 0.708 0.676 0.000 0.072 0.192 0.012 0.048
#> SRR1643189 1 0.5413 0.708 0.676 0.000 0.072 0.192 0.012 0.048
#> SRR1643190 1 0.5413 0.708 0.676 0.000 0.072 0.192 0.012 0.048
#> SRR1643191 1 0.6678 0.441 0.512 0.000 0.212 0.192 0.000 0.084
#> SRR1643192 1 0.6678 0.441 0.512 0.000 0.212 0.192 0.000 0.084
#> SRR1643193 1 0.4409 0.776 0.764 0.000 0.040 0.148 0.012 0.036
#> SRR1643194 1 0.4436 0.777 0.764 0.000 0.044 0.144 0.012 0.036
#> SRR1643195 1 0.6482 0.273 0.460 0.000 0.120 0.368 0.012 0.040
#> SRR1643196 1 0.6426 0.278 0.464 0.000 0.120 0.368 0.012 0.036
#> SRR1643197 1 0.2143 0.838 0.916 0.000 0.008 0.048 0.016 0.012
#> SRR1643198 1 0.2364 0.837 0.904 0.000 0.008 0.056 0.016 0.016
#> SRR1643199 1 0.4552 0.742 0.732 0.000 0.024 0.196 0.020 0.028
#> SRR1643200 1 0.4478 0.743 0.736 0.000 0.024 0.196 0.020 0.024
#> SRR1643201 1 0.6674 0.365 0.476 0.000 0.120 0.332 0.012 0.060
#> SRR1643202 1 0.6657 0.387 0.484 0.000 0.120 0.324 0.012 0.060
#> SRR1643203 1 0.5190 0.731 0.704 0.000 0.076 0.164 0.012 0.044
#> SRR1643204 1 0.5140 0.735 0.708 0.000 0.072 0.164 0.012 0.044
#> SRR1643205 3 0.0146 0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643206 3 0.0146 0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643207 3 0.0146 0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643208 3 0.0146 0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643209 3 0.0146 0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643210 3 0.0146 0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643211 3 0.0000 0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643212 3 0.0000 0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643213 3 0.0000 0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643214 3 0.0000 0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643215 3 0.0146 0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643216 3 0.0146 0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643217 3 0.0146 0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643218 3 0.0146 0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643219 3 0.0146 0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643220 3 0.0146 0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643221 3 0.0146 0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643222 3 0.0146 0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643223 3 0.0000 0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643224 3 0.0000 0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643225 3 0.0000 0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643226 3 0.0000 0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643227 3 0.0146 0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643228 3 0.0146 0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643229 3 0.0146 0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643230 3 0.0146 0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643231 3 0.0000 0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643232 3 0.0000 0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643233 3 0.0363 0.976 0.000 0.000 0.988 0.012 0.000 0.000
#> SRR1643234 3 0.0363 0.976 0.000 0.000 0.988 0.012 0.000 0.000
#> SRR1643235 3 0.0000 0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643236 3 0.0000 0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643237 3 0.0000 0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643238 3 0.0000 0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643239 3 0.0000 0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643240 3 0.0000 0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643241 3 0.0000 0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643242 3 0.2201 0.896 0.000 0.000 0.900 0.048 0.000 0.052
#> SRR1643243 3 0.1480 0.938 0.000 0.000 0.940 0.040 0.000 0.020
#> SRR1643245 3 0.1633 0.930 0.000 0.000 0.932 0.044 0.000 0.024
#> SRR1643246 3 0.1633 0.930 0.000 0.000 0.932 0.044 0.000 0.024
#> SRR1643247 3 0.1633 0.930 0.000 0.000 0.932 0.044 0.000 0.024
#> SRR1643248 3 0.0146 0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643249 3 0.5420 0.513 0.128 0.000 0.680 0.116 0.000 0.076
#> SRR1643250 4 0.1753 0.982 0.084 0.000 0.000 0.912 0.000 0.004
#> SRR1643251 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643252 4 0.1663 0.986 0.088 0.000 0.000 0.912 0.000 0.000
#> SRR1643253 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643254 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643255 4 0.1753 0.982 0.084 0.000 0.000 0.912 0.000 0.004
#> SRR1643256 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643257 4 0.1753 0.982 0.084 0.000 0.000 0.912 0.000 0.004
#> SRR1643258 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643259 4 0.1663 0.986 0.088 0.000 0.000 0.912 0.000 0.000
#> SRR1643260 4 0.1663 0.986 0.088 0.000 0.000 0.912 0.000 0.000
#> SRR1643261 4 0.1812 0.976 0.080 0.000 0.000 0.912 0.000 0.008
#> SRR1643262 4 0.1806 0.982 0.088 0.000 0.000 0.908 0.000 0.004
#> SRR1643263 4 0.1858 0.985 0.092 0.000 0.000 0.904 0.000 0.004
#> SRR1643264 4 0.1806 0.982 0.088 0.000 0.000 0.908 0.000 0.004
#> SRR1643266 4 0.1858 0.985 0.092 0.000 0.000 0.904 0.000 0.004
#> SRR1643267 4 0.1714 0.985 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643268 4 0.1858 0.985 0.092 0.000 0.000 0.904 0.000 0.004
#> SRR1643269 4 0.1858 0.985 0.092 0.000 0.000 0.904 0.000 0.004
#> SRR1643270 4 0.1908 0.978 0.096 0.000 0.000 0.900 0.000 0.004
#> SRR1643271 4 0.1858 0.985 0.092 0.000 0.000 0.904 0.000 0.004
#> SRR1643272 4 0.1806 0.982 0.088 0.000 0.000 0.908 0.000 0.004
#> SRR1643273 1 0.1675 0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643274 1 0.1749 0.835 0.932 0.000 0.000 0.036 0.008 0.024
#> SRR1643275 1 0.1749 0.834 0.932 0.000 0.000 0.036 0.008 0.024
#> SRR1643276 1 0.1675 0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643277 1 0.1675 0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643278 1 0.1749 0.834 0.932 0.000 0.000 0.036 0.008 0.024
#> SRR1643279 1 0.1675 0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643280 1 0.1675 0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643281 1 0.1675 0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643282 1 0.1675 0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643283 1 0.1675 0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643284 1 0.1675 0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643285 1 0.1749 0.835 0.932 0.000 0.000 0.036 0.008 0.024
#> SRR1643286 1 0.1675 0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643287 1 0.4233 0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643288 1 0.4290 0.546 0.668 0.000 0.000 0.296 0.008 0.028
#> SRR1643289 1 0.4233 0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643290 1 0.4252 0.555 0.676 0.000 0.000 0.288 0.008 0.028
#> SRR1643291 1 0.4252 0.555 0.676 0.000 0.000 0.288 0.008 0.028
#> SRR1643292 1 0.4233 0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643293 1 0.4233 0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643294 1 0.4233 0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643295 1 0.4233 0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643296 1 0.4233 0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643297 1 0.4290 0.550 0.668 0.000 0.000 0.296 0.008 0.028
#> SRR1643298 1 0.4233 0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643299 1 0.4233 0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643300 1 0.4233 0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643301 1 0.2036 0.831 0.916 0.000 0.000 0.048 0.008 0.028
#> SRR1643302 1 0.2036 0.831 0.916 0.000 0.000 0.048 0.008 0.028
#> SRR1643303 1 0.2036 0.831 0.916 0.000 0.000 0.048 0.008 0.028
#> SRR1643304 1 0.2036 0.831 0.916 0.000 0.000 0.048 0.008 0.028
#> SRR1643305 1 0.2164 0.830 0.908 0.000 0.000 0.056 0.008 0.028
#> SRR1643306 1 0.2563 0.824 0.880 0.000 0.000 0.084 0.008 0.028
#> SRR1643307 1 0.2036 0.831 0.916 0.000 0.000 0.048 0.008 0.028
#> SRR1643308 1 0.2177 0.830 0.908 0.000 0.000 0.052 0.008 0.032
#> SRR1643309 1 0.2022 0.832 0.916 0.000 0.000 0.052 0.008 0.024
#> SRR1643310 1 0.2036 0.831 0.916 0.000 0.000 0.048 0.008 0.028
#> SRR1643311 1 0.1957 0.831 0.920 0.000 0.000 0.048 0.008 0.024
#> SRR1643312 1 0.1957 0.831 0.920 0.000 0.000 0.048 0.008 0.024
#> SRR1643313 1 0.2036 0.831 0.916 0.000 0.000 0.048 0.008 0.028
#> SRR1643314 1 0.1518 0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643315 1 0.1518 0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643316 1 0.1518 0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643317 1 0.1405 0.837 0.948 0.000 0.000 0.024 0.004 0.024
#> SRR1643318 1 0.1518 0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643319 1 0.1599 0.836 0.940 0.000 0.000 0.028 0.008 0.024
#> SRR1643320 1 0.1518 0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643321 1 0.1518 0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643322 1 0.1518 0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643323 1 0.1518 0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643324 1 0.1518 0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643325 1 0.1518 0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643326 1 0.1518 0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643327 1 0.1518 0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643328 1 0.0820 0.839 0.972 0.000 0.000 0.012 0.000 0.016
#> SRR1643329 1 0.1003 0.839 0.964 0.000 0.000 0.020 0.000 0.016
#> SRR1643330 1 0.0820 0.839 0.972 0.000 0.000 0.012 0.000 0.016
#> SRR1643331 1 0.0717 0.839 0.976 0.000 0.000 0.008 0.000 0.016
#> SRR1643332 1 0.0914 0.839 0.968 0.000 0.000 0.016 0.000 0.016
#> SRR1643333 1 0.0717 0.839 0.976 0.000 0.000 0.008 0.000 0.016
#> SRR1643334 1 0.0717 0.839 0.976 0.000 0.000 0.008 0.000 0.016
#> SRR1643335 1 0.0717 0.839 0.976 0.000 0.000 0.008 0.000 0.016
#> SRR1643336 1 0.0717 0.839 0.976 0.000 0.000 0.008 0.000 0.016
#> SRR1643337 1 0.0717 0.839 0.976 0.000 0.000 0.008 0.000 0.016
#> SRR1643338 1 0.0717 0.839 0.976 0.000 0.000 0.008 0.000 0.016
#> SRR1643339 1 0.0717 0.839 0.976 0.000 0.000 0.008 0.000 0.016
#> SRR1643340 1 0.0820 0.839 0.972 0.000 0.000 0.012 0.000 0.016
#> SRR1643341 1 0.1168 0.839 0.956 0.000 0.000 0.028 0.000 0.016
#> SRR1643342 1 0.0820 0.839 0.972 0.000 0.000 0.012 0.000 0.016
#> SRR1643343 1 0.5036 0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643344 1 0.5036 0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643345 1 0.5036 0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643346 1 0.5036 0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643347 1 0.5036 0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643348 1 0.5036 0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643349 1 0.5036 0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643350 1 0.5036 0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643351 1 0.5036 0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643352 1 0.5036 0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643353 1 0.5036 0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643354 1 0.5036 0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643355 1 0.5036 0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643356 1 0.5036 0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643357 1 0.5036 0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643358 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643359 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643360 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643361 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643362 4 0.1806 0.985 0.088 0.000 0.000 0.908 0.000 0.004
#> SRR1643363 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643364 4 0.4698 0.586 0.268 0.000 0.064 0.660 0.000 0.008
#> SRR1643365 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643366 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643367 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643368 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643369 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643370 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643371 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643372 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643373 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643374 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643375 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643376 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643377 4 0.1806 0.985 0.088 0.000 0.000 0.908 0.000 0.004
#> SRR1643378 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643379 4 0.1858 0.982 0.092 0.000 0.000 0.904 0.000 0.004
#> SRR1643380 4 0.1814 0.982 0.100 0.000 0.000 0.900 0.000 0.000
#> SRR1643381 1 0.5751 0.332 0.508 0.000 0.108 0.364 0.000 0.020
#> SRR1643382 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643383 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643384 4 0.1858 0.985 0.092 0.000 0.000 0.904 0.000 0.004
#> SRR1643385 4 0.1714 0.985 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643386 4 0.1765 0.985 0.096 0.000 0.000 0.904 0.000 0.000
#> SRR1643387 4 0.1714 0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643388 4 0.1765 0.985 0.096 0.000 0.000 0.904 0.000 0.000
#> SRR1643389 4 0.1858 0.982 0.092 0.000 0.000 0.904 0.000 0.004
#> SRR1643390 1 0.0806 0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643391 1 0.0806 0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643392 1 0.0806 0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643393 1 0.0806 0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643394 1 0.0806 0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643395 1 0.0806 0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643396 1 0.1092 0.839 0.960 0.000 0.000 0.020 0.000 0.020
#> SRR1643397 1 0.0806 0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643398 1 0.0806 0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643399 1 0.0806 0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643400 1 0.0806 0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643401 1 0.0909 0.839 0.968 0.000 0.000 0.012 0.000 0.020
#> SRR1643402 1 0.0806 0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643403 1 0.0806 0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643404 1 0.0806 0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643405 1 0.4511 0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643406 1 0.4511 0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643407 1 0.4511 0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643408 1 0.4511 0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643409 1 0.4511 0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643410 1 0.4511 0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643411 1 0.4511 0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643412 1 0.4511 0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643413 1 0.4511 0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643414 1 0.4511 0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643415 1 0.4511 0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643416 1 0.4511 0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643417 1 0.4511 0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643418 6 0.3123 0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643419 6 0.3123 0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643420 6 0.3123 0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643421 6 0.3123 0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643422 6 0.3123 0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643423 6 0.3123 0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643424 6 0.3123 0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643425 6 0.3123 0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643426 6 0.3123 0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643427 6 0.3123 0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643428 6 0.3123 0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643429 6 0.3123 0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643430 6 0.3190 0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643431 6 0.3190 0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643432 6 0.3190 0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643433 6 0.3190 0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643434 6 0.3190 0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643435 6 0.3190 0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643436 6 0.3190 0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643437 6 0.3190 0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643438 6 0.3190 0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643439 6 0.3190 0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643440 6 0.3190 0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643441 6 0.3190 0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643442 6 0.3190 0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643443 2 0.0713 0.548 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643444 2 0.0937 0.535 0.000 0.960 0.000 0.000 0.040 0.000
#> SRR1643445 2 0.0713 0.548 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643446 2 0.0713 0.548 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643447 2 0.0547 0.555 0.000 0.980 0.000 0.000 0.020 0.000
#> SRR1643448 2 0.0458 0.558 0.000 0.984 0.000 0.000 0.016 0.000
#> SRR1643449 2 0.0632 0.552 0.000 0.976 0.000 0.000 0.024 0.000
#> SRR1643450 2 0.0632 0.552 0.000 0.976 0.000 0.000 0.024 0.000
#> SRR1643451 2 0.0713 0.548 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643452 2 0.0713 0.548 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643453 2 0.0632 0.552 0.000 0.976 0.000 0.000 0.024 0.000
#> SRR1643454 2 0.0632 0.552 0.000 0.976 0.000 0.000 0.024 0.000
#> SRR1643455 2 0.0632 0.552 0.000 0.976 0.000 0.000 0.024 0.000
#> SRR1643456 2 0.1075 0.543 0.000 0.952 0.000 0.000 0.048 0.000
#> SRR1643457 2 0.1007 0.555 0.000 0.956 0.000 0.000 0.044 0.000
#> SRR1643458 2 0.0865 0.573 0.000 0.964 0.000 0.000 0.036 0.000
#> SRR1643459 2 0.2762 0.643 0.000 0.804 0.000 0.000 0.196 0.000
#> SRR1643460 2 0.1075 0.564 0.000 0.952 0.000 0.000 0.048 0.000
#> SRR1643461 2 0.1007 0.555 0.000 0.956 0.000 0.000 0.044 0.000
#> SRR1643462 2 0.1327 0.540 0.000 0.936 0.000 0.000 0.064 0.000
#> SRR1643463 2 0.1141 0.546 0.000 0.948 0.000 0.000 0.052 0.000
#> SRR1643464 2 0.1267 0.545 0.000 0.940 0.000 0.000 0.060 0.000
#> SRR1643466 2 0.1204 0.550 0.000 0.944 0.000 0.000 0.056 0.000
#> SRR1643467 2 0.0937 0.560 0.000 0.960 0.000 0.000 0.040 0.000
#> SRR1643468 2 0.3482 0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643469 2 0.3482 0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643470 2 0.3482 0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643471 2 0.3482 0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643472 2 0.3482 0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643473 2 0.3482 0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643474 2 0.3482 0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643475 2 0.3499 0.679 0.000 0.680 0.000 0.000 0.320 0.000
#> SRR1643477 2 0.3482 0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643478 2 0.3482 0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643479 2 0.3482 0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643480 2 0.3482 0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643481 2 0.1444 0.472 0.000 0.928 0.000 0.000 0.072 0.000
#> SRR1643482 2 0.1501 0.466 0.000 0.924 0.000 0.000 0.076 0.000
#> SRR1643483 2 0.1556 0.458 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643484 2 0.1501 0.465 0.000 0.924 0.000 0.000 0.076 0.000
#> SRR1643485 2 0.1556 0.458 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643486 2 0.1556 0.458 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643487 2 0.1556 0.458 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643488 2 0.1610 0.452 0.000 0.916 0.000 0.000 0.084 0.000
#> SRR1643489 2 0.1556 0.458 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643490 2 0.1267 0.490 0.000 0.940 0.000 0.000 0.060 0.000
#> SRR1643491 2 0.1501 0.466 0.000 0.924 0.000 0.000 0.076 0.000
#> SRR1643492 2 0.0547 0.548 0.000 0.980 0.000 0.000 0.020 0.000
#> SRR1643493 2 0.1387 0.478 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643494 2 0.1556 0.458 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643495 2 0.1556 0.458 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643496 2 0.1387 0.490 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643497 2 0.2048 0.371 0.000 0.880 0.000 0.000 0.120 0.000
#> SRR1643498 2 0.2048 0.371 0.000 0.880 0.000 0.000 0.120 0.000
#> SRR1643499 2 0.2048 0.371 0.000 0.880 0.000 0.000 0.120 0.000
#> SRR1643500 2 0.2048 0.371 0.000 0.880 0.000 0.000 0.120 0.000
#> SRR1643501 2 0.1814 0.420 0.000 0.900 0.000 0.000 0.100 0.000
#> SRR1643502 2 0.1765 0.428 0.000 0.904 0.000 0.000 0.096 0.000
#> SRR1643503 2 0.2048 0.371 0.000 0.880 0.000 0.000 0.120 0.000
#> SRR1643504 2 0.1204 0.496 0.000 0.944 0.000 0.000 0.056 0.000
#> SRR1643505 2 0.4620 -0.852 0.000 0.532 0.040 0.000 0.428 0.000
#> SRR1643506 2 0.2048 0.371 0.000 0.880 0.000 0.000 0.120 0.000
#> SRR1643507 2 0.1814 0.418 0.000 0.900 0.000 0.000 0.100 0.000
#> SRR1643508 2 0.1910 0.402 0.000 0.892 0.000 0.000 0.108 0.000
#> SRR1643509 2 0.1267 0.490 0.000 0.940 0.000 0.000 0.060 0.000
#> SRR1643510 2 0.1957 0.392 0.000 0.888 0.000 0.000 0.112 0.000
#> SRR1643511 2 0.1957 0.391 0.000 0.888 0.000 0.000 0.112 0.000
#> SRR1643512 2 0.2003 0.382 0.000 0.884 0.000 0.000 0.116 0.000
#> SRR1643513 2 0.1957 0.392 0.000 0.888 0.000 0.000 0.112 0.000
#> SRR1643531 5 0.4650 1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643532 5 0.4650 1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643533 5 0.4650 1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643534 5 0.4650 1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643535 5 0.4650 1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643536 5 0.4650 1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643537 5 0.4650 1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643538 5 0.4650 1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643539 5 0.4650 1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643540 5 0.4650 1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643541 5 0.4650 1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643542 5 0.4650 1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643543 5 0.4650 1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643544 5 0.4650 1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643514 2 0.3765 0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643515 2 0.3765 0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643516 2 0.3765 0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643517 2 0.3765 0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643518 2 0.3765 0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643519 2 0.3765 0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643520 2 0.3765 0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643521 2 0.3765 0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643522 2 0.3765 0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643523 2 0.3765 0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643524 2 0.3765 0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643525 2 0.3765 0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643526 2 0.3765 0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643527 2 0.3765 0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643528 2 0.3765 0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643529 2 0.3765 0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643530 2 0.3765 0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643545 2 0.3620 0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643546 2 0.3620 0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643547 2 0.3620 0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643548 2 0.3620 0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643549 2 0.3620 0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643550 2 0.4234 0.662 0.000 0.644 0.032 0.000 0.324 0.000
#> SRR1643551 2 0.3620 0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643552 2 0.3620 0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643553 2 0.3620 0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643554 2 0.3620 0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643555 2 0.3620 0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643556 2 0.3620 0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643558 2 0.3620 0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643559 2 0.3727 0.665 0.000 0.612 0.000 0.000 0.388 0.000
#> SRR1643560 2 0.3727 0.665 0.000 0.612 0.000 0.000 0.388 0.000
#> SRR1643561 2 0.3727 0.665 0.000 0.612 0.000 0.000 0.388 0.000
#> SRR1643562 2 0.3717 0.667 0.000 0.616 0.000 0.000 0.384 0.000
#> SRR1643563 2 0.3727 0.665 0.000 0.612 0.000 0.000 0.388 0.000
#> SRR1643564 2 0.3620 0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643565 2 0.3737 0.664 0.000 0.608 0.000 0.000 0.392 0.000
#> SRR1643566 2 0.3727 0.665 0.000 0.612 0.000 0.000 0.388 0.000
#> SRR1643567 2 0.3737 0.664 0.000 0.608 0.000 0.000 0.392 0.000
#> SRR1643568 2 0.3727 0.665 0.000 0.612 0.000 0.000 0.388 0.000
#> SRR1643569 2 0.3727 0.665 0.000 0.612 0.000 0.000 0.388 0.000
#> SRR1643570 2 0.3727 0.665 0.000 0.612 0.000 0.000 0.388 0.000
#> SRR1643571 2 0.3737 0.664 0.000 0.608 0.000 0.000 0.392 0.000
#> SRR1643572 2 0.3727 0.665 0.000 0.612 0.000 0.000 0.388 0.000
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
The object with results only for a single top-value method and a single partition method can be extracted as:
res = res_list["ATC", "NMF"]
# you can also extract it by
# res = res_list["ATC:NMF"]
A summary of res and all the functions that can be applied to it:
res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#> On a matrix with 15395 rows and 400 columns.
#> Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'ATC' method.
#> Subgroups are detected by 'NMF' method.
#> Performed in total 1250 partitions by row resampling.
#> Best k for subgroups seems to be 2.
#>
#> Following methods can be applied to this 'ConsensusPartition' object:
#> [1] "cola_report" "collect_classes" "collect_plots"
#> [4] "collect_stats" "colnames" "compare_signatures"
#> [7] "consensus_heatmap" "dimension_reduction" "functional_enrichment"
#> [10] "get_anno_col" "get_anno" "get_classes"
#> [13] "get_consensus" "get_matrix" "get_membership"
#> [16] "get_param" "get_signatures" "get_stats"
#> [19] "is_best_k" "is_stable_k" "membership_heatmap"
#> [22] "ncol" "nrow" "plot_ecdf"
#> [25] "rownames" "select_partition_number" "show"
#> [28] "suggest_best_k" "test_to_known_factors"
collect_plots() function collects all the plots made from res for all k (number of partitions)
into one single page to provide an easy and fast comparison between different k.
collect_plots(res)
The plots are:
k and the heatmap of
predicted classes for each k.k.k.k.All the plots in panels can be made by individual functions and they are plotted later in this section.
select_partition_number() produces several plots showing different
statistics for choosing “optimized” k. There are following statistics:
k;k, the area increased is defined as \(A_k - A_{k-1}\).The detailed explanations of these statistics can be found in the cola vignette.
Generally speaking, lower PAC score, higher mean silhouette score or higher
concordance corresponds to better partition. Rand index and Jaccard index
measure how similar the current partition is compared to partition with k-1.
If they are too similar, we won't accept k is better than k-1.
select_partition_number(res)
The numeric values for all these statistics can be obtained by get_stats().
get_stats(res)
#> k 1-PAC mean_silhouette concordance area_increased Rand Jaccard
#> 2 2 1.000 1.000 1.000 0.4350 0.566 0.566
#> 3 3 0.761 0.830 0.913 0.3088 0.865 0.761
#> 4 4 0.800 0.884 0.917 0.0703 0.993 0.984
#> 5 5 0.807 0.879 0.902 0.1551 0.836 0.624
#> 6 6 0.762 0.793 0.817 0.0675 0.917 0.714
suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:
suggest_best_k(res)
#> [1] 2
Following shows the table of the partitions (You need to click the show/hide
code output link to see it). The membership matrix (columns with name p*)
is inferred by
clue::cl_consensus()
function with the SE method. Basically the value in the membership matrix
represents the probability to belong to a certain group. The finall class
label for an item is determined with the group with highest probability it
belongs to.
In get_classes() function, the entropy is calculated from the membership
matrix and the silhouette score is calculated from the consensus matrix.
cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#> class entropy silhouette p1 p2
#> SRR1643167 1 0 1 1 0
#> SRR1643168 1 0 1 1 0
#> SRR1643169 1 0 1 1 0
#> SRR1643170 1 0 1 1 0
#> SRR1643171 1 0 1 1 0
#> SRR1643172 1 0 1 1 0
#> SRR1643173 1 0 1 1 0
#> SRR1643174 1 0 1 1 0
#> SRR1643175 1 0 1 1 0
#> SRR1643176 1 0 1 1 0
#> SRR1643177 1 0 1 1 0
#> SRR1643178 1 0 1 1 0
#> SRR1643180 1 0 1 1 0
#> SRR1643181 1 0 1 1 0
#> SRR1643182 1 0 1 1 0
#> SRR1643183 1 0 1 1 0
#> SRR1643184 1 0 1 1 0
#> SRR1643185 1 0 1 1 0
#> SRR1643186 1 0 1 1 0
#> SRR1643187 1 0 1 1 0
#> SRR1643188 1 0 1 1 0
#> SRR1643189 1 0 1 1 0
#> SRR1643190 1 0 1 1 0
#> SRR1643191 1 0 1 1 0
#> SRR1643192 1 0 1 1 0
#> SRR1643193 1 0 1 1 0
#> SRR1643194 1 0 1 1 0
#> SRR1643195 1 0 1 1 0
#> SRR1643196 1 0 1 1 0
#> SRR1643197 1 0 1 1 0
#> SRR1643198 1 0 1 1 0
#> SRR1643199 1 0 1 1 0
#> SRR1643200 1 0 1 1 0
#> SRR1643201 1 0 1 1 0
#> SRR1643202 1 0 1 1 0
#> SRR1643203 1 0 1 1 0
#> SRR1643204 1 0 1 1 0
#> SRR1643205 1 0 1 1 0
#> SRR1643206 1 0 1 1 0
#> SRR1643207 1 0 1 1 0
#> SRR1643208 1 0 1 1 0
#> SRR1643209 1 0 1 1 0
#> SRR1643210 1 0 1 1 0
#> SRR1643211 1 0 1 1 0
#> SRR1643212 1 0 1 1 0
#> SRR1643213 1 0 1 1 0
#> SRR1643214 1 0 1 1 0
#> SRR1643215 1 0 1 1 0
#> SRR1643216 1 0 1 1 0
#> SRR1643217 1 0 1 1 0
#> SRR1643218 1 0 1 1 0
#> SRR1643219 1 0 1 1 0
#> SRR1643220 1 0 1 1 0
#> SRR1643221 1 0 1 1 0
#> SRR1643222 1 0 1 1 0
#> SRR1643223 1 0 1 1 0
#> SRR1643224 1 0 1 1 0
#> SRR1643225 1 0 1 1 0
#> SRR1643226 1 0 1 1 0
#> SRR1643227 1 0 1 1 0
#> SRR1643228 1 0 1 1 0
#> SRR1643229 1 0 1 1 0
#> SRR1643230 1 0 1 1 0
#> SRR1643231 1 0 1 1 0
#> SRR1643232 1 0 1 1 0
#> SRR1643233 1 0 1 1 0
#> SRR1643234 1 0 1 1 0
#> SRR1643235 1 0 1 1 0
#> SRR1643236 1 0 1 1 0
#> SRR1643237 1 0 1 1 0
#> SRR1643238 1 0 1 1 0
#> SRR1643239 1 0 1 1 0
#> SRR1643240 1 0 1 1 0
#> SRR1643241 1 0 1 1 0
#> SRR1643242 1 0 1 1 0
#> SRR1643243 1 0 1 1 0
#> SRR1643245 1 0 1 1 0
#> SRR1643246 1 0 1 1 0
#> SRR1643247 1 0 1 1 0
#> SRR1643248 1 0 1 1 0
#> SRR1643249 1 0 1 1 0
#> SRR1643250 1 0 1 1 0
#> SRR1643251 1 0 1 1 0
#> SRR1643252 1 0 1 1 0
#> SRR1643253 1 0 1 1 0
#> SRR1643254 1 0 1 1 0
#> SRR1643255 1 0 1 1 0
#> SRR1643256 1 0 1 1 0
#> SRR1643257 1 0 1 1 0
#> SRR1643258 1 0 1 1 0
#> SRR1643259 1 0 1 1 0
#> SRR1643260 1 0 1 1 0
#> SRR1643261 1 0 1 1 0
#> SRR1643262 1 0 1 1 0
#> SRR1643263 1 0 1 1 0
#> SRR1643264 1 0 1 1 0
#> SRR1643266 1 0 1 1 0
#> SRR1643267 1 0 1 1 0
#> SRR1643268 1 0 1 1 0
#> SRR1643269 1 0 1 1 0
#> SRR1643270 1 0 1 1 0
#> SRR1643271 1 0 1 1 0
#> SRR1643272 1 0 1 1 0
#> SRR1643273 1 0 1 1 0
#> SRR1643274 1 0 1 1 0
#> SRR1643275 1 0 1 1 0
#> SRR1643276 1 0 1 1 0
#> SRR1643277 1 0 1 1 0
#> SRR1643278 1 0 1 1 0
#> SRR1643279 1 0 1 1 0
#> SRR1643280 1 0 1 1 0
#> SRR1643281 1 0 1 1 0
#> SRR1643282 1 0 1 1 0
#> SRR1643283 1 0 1 1 0
#> SRR1643284 1 0 1 1 0
#> SRR1643285 1 0 1 1 0
#> SRR1643286 1 0 1 1 0
#> SRR1643287 1 0 1 1 0
#> SRR1643288 1 0 1 1 0
#> SRR1643289 1 0 1 1 0
#> SRR1643290 1 0 1 1 0
#> SRR1643291 1 0 1 1 0
#> SRR1643292 1 0 1 1 0
#> SRR1643293 1 0 1 1 0
#> SRR1643294 1 0 1 1 0
#> SRR1643295 1 0 1 1 0
#> SRR1643296 1 0 1 1 0
#> SRR1643297 1 0 1 1 0
#> SRR1643298 1 0 1 1 0
#> SRR1643299 1 0 1 1 0
#> SRR1643300 1 0 1 1 0
#> SRR1643301 1 0 1 1 0
#> SRR1643302 1 0 1 1 0
#> SRR1643303 1 0 1 1 0
#> SRR1643304 1 0 1 1 0
#> SRR1643305 1 0 1 1 0
#> SRR1643306 1 0 1 1 0
#> SRR1643307 1 0 1 1 0
#> SRR1643308 1 0 1 1 0
#> SRR1643309 1 0 1 1 0
#> SRR1643310 1 0 1 1 0
#> SRR1643311 1 0 1 1 0
#> SRR1643312 1 0 1 1 0
#> SRR1643313 1 0 1 1 0
#> SRR1643314 1 0 1 1 0
#> SRR1643315 1 0 1 1 0
#> SRR1643316 1 0 1 1 0
#> SRR1643317 1 0 1 1 0
#> SRR1643318 1 0 1 1 0
#> SRR1643319 1 0 1 1 0
#> SRR1643320 1 0 1 1 0
#> SRR1643321 1 0 1 1 0
#> SRR1643322 1 0 1 1 0
#> SRR1643323 1 0 1 1 0
#> SRR1643324 1 0 1 1 0
#> SRR1643325 1 0 1 1 0
#> SRR1643326 1 0 1 1 0
#> SRR1643327 1 0 1 1 0
#> SRR1643328 1 0 1 1 0
#> SRR1643329 1 0 1 1 0
#> SRR1643330 1 0 1 1 0
#> SRR1643331 1 0 1 1 0
#> SRR1643332 1 0 1 1 0
#> SRR1643333 1 0 1 1 0
#> SRR1643334 1 0 1 1 0
#> SRR1643335 1 0 1 1 0
#> SRR1643336 1 0 1 1 0
#> SRR1643337 1 0 1 1 0
#> SRR1643338 1 0 1 1 0
#> SRR1643339 1 0 1 1 0
#> SRR1643340 1 0 1 1 0
#> SRR1643341 1 0 1 1 0
#> SRR1643342 1 0 1 1 0
#> SRR1643343 1 0 1 1 0
#> SRR1643344 1 0 1 1 0
#> SRR1643345 1 0 1 1 0
#> SRR1643346 1 0 1 1 0
#> SRR1643347 1 0 1 1 0
#> SRR1643348 1 0 1 1 0
#> SRR1643349 1 0 1 1 0
#> SRR1643350 1 0 1 1 0
#> SRR1643351 1 0 1 1 0
#> SRR1643352 1 0 1 1 0
#> SRR1643353 1 0 1 1 0
#> SRR1643354 1 0 1 1 0
#> SRR1643355 1 0 1 1 0
#> SRR1643356 1 0 1 1 0
#> SRR1643357 1 0 1 1 0
#> SRR1643358 1 0 1 1 0
#> SRR1643359 1 0 1 1 0
#> SRR1643360 1 0 1 1 0
#> SRR1643361 1 0 1 1 0
#> SRR1643362 1 0 1 1 0
#> SRR1643363 1 0 1 1 0
#> SRR1643364 1 0 1 1 0
#> SRR1643365 1 0 1 1 0
#> SRR1643366 1 0 1 1 0
#> SRR1643367 1 0 1 1 0
#> SRR1643368 1 0 1 1 0
#> SRR1643369 1 0 1 1 0
#> SRR1643370 1 0 1 1 0
#> SRR1643371 1 0 1 1 0
#> SRR1643372 1 0 1 1 0
#> SRR1643373 1 0 1 1 0
#> SRR1643374 1 0 1 1 0
#> SRR1643375 1 0 1 1 0
#> SRR1643376 1 0 1 1 0
#> SRR1643377 1 0 1 1 0
#> SRR1643378 1 0 1 1 0
#> SRR1643379 1 0 1 1 0
#> SRR1643380 1 0 1 1 0
#> SRR1643381 1 0 1 1 0
#> SRR1643382 1 0 1 1 0
#> SRR1643383 1 0 1 1 0
#> SRR1643384 1 0 1 1 0
#> SRR1643385 1 0 1 1 0
#> SRR1643386 1 0 1 1 0
#> SRR1643387 1 0 1 1 0
#> SRR1643388 1 0 1 1 0
#> SRR1643389 1 0 1 1 0
#> SRR1643390 1 0 1 1 0
#> SRR1643391 1 0 1 1 0
#> SRR1643392 1 0 1 1 0
#> SRR1643393 1 0 1 1 0
#> SRR1643394 1 0 1 1 0
#> SRR1643395 1 0 1 1 0
#> SRR1643396 1 0 1 1 0
#> SRR1643397 1 0 1 1 0
#> SRR1643398 1 0 1 1 0
#> SRR1643399 1 0 1 1 0
#> SRR1643400 1 0 1 1 0
#> SRR1643401 1 0 1 1 0
#> SRR1643402 1 0 1 1 0
#> SRR1643403 1 0 1 1 0
#> SRR1643404 1 0 1 1 0
#> SRR1643405 1 0 1 1 0
#> SRR1643406 1 0 1 1 0
#> SRR1643407 1 0 1 1 0
#> SRR1643408 1 0 1 1 0
#> SRR1643409 1 0 1 1 0
#> SRR1643410 1 0 1 1 0
#> SRR1643411 1 0 1 1 0
#> SRR1643412 1 0 1 1 0
#> SRR1643413 1 0 1 1 0
#> SRR1643414 1 0 1 1 0
#> SRR1643415 1 0 1 1 0
#> SRR1643416 1 0 1 1 0
#> SRR1643417 1 0 1 1 0
#> SRR1643418 1 0 1 1 0
#> SRR1643419 1 0 1 1 0
#> SRR1643420 1 0 1 1 0
#> SRR1643421 1 0 1 1 0
#> SRR1643422 1 0 1 1 0
#> SRR1643423 1 0 1 1 0
#> SRR1643424 1 0 1 1 0
#> SRR1643425 1 0 1 1 0
#> SRR1643426 1 0 1 1 0
#> SRR1643427 1 0 1 1 0
#> SRR1643428 1 0 1 1 0
#> SRR1643429 1 0 1 1 0
#> SRR1643430 1 0 1 1 0
#> SRR1643431 1 0 1 1 0
#> SRR1643432 1 0 1 1 0
#> SRR1643433 1 0 1 1 0
#> SRR1643434 1 0 1 1 0
#> SRR1643435 1 0 1 1 0
#> SRR1643436 1 0 1 1 0
#> SRR1643437 1 0 1 1 0
#> SRR1643438 1 0 1 1 0
#> SRR1643439 1 0 1 1 0
#> SRR1643440 1 0 1 1 0
#> SRR1643441 1 0 1 1 0
#> SRR1643442 1 0 1 1 0
#> SRR1643443 2 0 1 0 1
#> SRR1643444 2 0 1 0 1
#> SRR1643445 2 0 1 0 1
#> SRR1643446 2 0 1 0 1
#> SRR1643447 2 0 1 0 1
#> SRR1643448 2 0 1 0 1
#> SRR1643449 2 0 1 0 1
#> SRR1643450 2 0 1 0 1
#> SRR1643451 2 0 1 0 1
#> SRR1643452 2 0 1 0 1
#> SRR1643453 2 0 1 0 1
#> SRR1643454 2 0 1 0 1
#> SRR1643455 2 0 1 0 1
#> SRR1643456 2 0 1 0 1
#> SRR1643457 2 0 1 0 1
#> SRR1643458 2 0 1 0 1
#> SRR1643459 2 0 1 0 1
#> SRR1643460 2 0 1 0 1
#> SRR1643461 2 0 1 0 1
#> SRR1643462 2 0 1 0 1
#> SRR1643463 2 0 1 0 1
#> SRR1643464 2 0 1 0 1
#> SRR1643466 2 0 1 0 1
#> SRR1643467 2 0 1 0 1
#> SRR1643468 2 0 1 0 1
#> SRR1643469 2 0 1 0 1
#> SRR1643470 2 0 1 0 1
#> SRR1643471 2 0 1 0 1
#> SRR1643472 2 0 1 0 1
#> SRR1643473 2 0 1 0 1
#> SRR1643474 2 0 1 0 1
#> SRR1643475 2 0 1 0 1
#> SRR1643477 2 0 1 0 1
#> SRR1643478 2 0 1 0 1
#> SRR1643479 2 0 1 0 1
#> SRR1643480 2 0 1 0 1
#> SRR1643481 2 0 1 0 1
#> SRR1643482 2 0 1 0 1
#> SRR1643483 2 0 1 0 1
#> SRR1643484 2 0 1 0 1
#> SRR1643485 2 0 1 0 1
#> SRR1643486 2 0 1 0 1
#> SRR1643487 2 0 1 0 1
#> SRR1643488 2 0 1 0 1
#> SRR1643489 2 0 1 0 1
#> SRR1643490 2 0 1 0 1
#> SRR1643491 2 0 1 0 1
#> SRR1643492 2 0 1 0 1
#> SRR1643493 2 0 1 0 1
#> SRR1643494 2 0 1 0 1
#> SRR1643495 2 0 1 0 1
#> SRR1643496 2 0 1 0 1
#> SRR1643497 2 0 1 0 1
#> SRR1643498 2 0 1 0 1
#> SRR1643499 2 0 1 0 1
#> SRR1643500 2 0 1 0 1
#> SRR1643501 2 0 1 0 1
#> SRR1643502 2 0 1 0 1
#> SRR1643503 2 0 1 0 1
#> SRR1643504 2 0 1 0 1
#> SRR1643505 2 0 1 0 1
#> SRR1643506 2 0 1 0 1
#> SRR1643507 2 0 1 0 1
#> SRR1643508 2 0 1 0 1
#> SRR1643509 2 0 1 0 1
#> SRR1643510 2 0 1 0 1
#> SRR1643511 2 0 1 0 1
#> SRR1643512 2 0 1 0 1
#> SRR1643513 2 0 1 0 1
#> SRR1643531 2 0 1 0 1
#> SRR1643532 2 0 1 0 1
#> SRR1643533 2 0 1 0 1
#> SRR1643534 2 0 1 0 1
#> SRR1643535 2 0 1 0 1
#> SRR1643536 2 0 1 0 1
#> SRR1643537 2 0 1 0 1
#> SRR1643538 2 0 1 0 1
#> SRR1643539 2 0 1 0 1
#> SRR1643540 2 0 1 0 1
#> SRR1643541 2 0 1 0 1
#> SRR1643542 2 0 1 0 1
#> SRR1643543 2 0 1 0 1
#> SRR1643544 2 0 1 0 1
#> SRR1643514 2 0 1 0 1
#> SRR1643515 2 0 1 0 1
#> SRR1643516 2 0 1 0 1
#> SRR1643517 2 0 1 0 1
#> SRR1643518 2 0 1 0 1
#> SRR1643519 2 0 1 0 1
#> SRR1643520 2 0 1 0 1
#> SRR1643521 2 0 1 0 1
#> SRR1643522 2 0 1 0 1
#> SRR1643523 2 0 1 0 1
#> SRR1643524 2 0 1 0 1
#> SRR1643525 2 0 1 0 1
#> SRR1643526 2 0 1 0 1
#> SRR1643527 2 0 1 0 1
#> SRR1643528 2 0 1 0 1
#> SRR1643529 2 0 1 0 1
#> SRR1643530 2 0 1 0 1
#> SRR1643545 2 0 1 0 1
#> SRR1643546 2 0 1 0 1
#> SRR1643547 2 0 1 0 1
#> SRR1643548 2 0 1 0 1
#> SRR1643549 2 0 1 0 1
#> SRR1643550 2 0 1 0 1
#> SRR1643551 2 0 1 0 1
#> SRR1643552 2 0 1 0 1
#> SRR1643553 2 0 1 0 1
#> SRR1643554 2 0 1 0 1
#> SRR1643555 2 0 1 0 1
#> SRR1643556 2 0 1 0 1
#> SRR1643558 2 0 1 0 1
#> SRR1643559 2 0 1 0 1
#> SRR1643560 2 0 1 0 1
#> SRR1643561 2 0 1 0 1
#> SRR1643562 2 0 1 0 1
#> SRR1643563 2 0 1 0 1
#> SRR1643564 2 0 1 0 1
#> SRR1643565 2 0 1 0 1
#> SRR1643566 2 0 1 0 1
#> SRR1643567 2 0 1 0 1
#> SRR1643568 2 0 1 0 1
#> SRR1643569 2 0 1 0 1
#> SRR1643570 2 0 1 0 1
#> SRR1643571 2 0 1 0 1
#> SRR1643572 2 0 1 0 1
cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#> class entropy silhouette p1 p2 p3
#> SRR1643167 1 0.5178 0.5881 0.744 0 0.256
#> SRR1643168 1 0.5178 0.5881 0.744 0 0.256
#> SRR1643169 1 0.5058 0.6100 0.756 0 0.244
#> SRR1643170 1 0.5178 0.5881 0.744 0 0.256
#> SRR1643171 1 0.5591 0.4829 0.696 0 0.304
#> SRR1643172 1 0.5591 0.4829 0.696 0 0.304
#> SRR1643173 1 0.5621 0.4727 0.692 0 0.308
#> SRR1643174 1 0.5591 0.4832 0.696 0 0.304
#> SRR1643175 1 0.2878 0.8027 0.904 0 0.096
#> SRR1643176 1 0.2878 0.8027 0.904 0 0.096
#> SRR1643177 1 0.2711 0.8098 0.912 0 0.088
#> SRR1643178 1 0.2959 0.7988 0.900 0 0.100
#> SRR1643180 1 0.6026 0.2674 0.624 0 0.376
#> SRR1643181 1 0.6111 0.1911 0.604 0 0.396
#> SRR1643182 1 0.6111 0.1908 0.604 0 0.396
#> SRR1643183 1 0.4452 0.6902 0.808 0 0.192
#> SRR1643184 1 0.4605 0.6734 0.796 0 0.204
#> SRR1643185 1 0.4750 0.6559 0.784 0 0.216
#> SRR1643186 1 0.4605 0.6734 0.796 0 0.204
#> SRR1643187 1 0.2711 0.8079 0.912 0 0.088
#> SRR1643188 1 0.2796 0.8045 0.908 0 0.092
#> SRR1643189 1 0.2625 0.8113 0.916 0 0.084
#> SRR1643190 1 0.2711 0.8079 0.912 0 0.088
#> SRR1643191 3 0.5948 0.7449 0.360 0 0.640
#> SRR1643192 3 0.5948 0.7449 0.360 0 0.640
#> SRR1643193 1 0.2796 0.8053 0.908 0 0.092
#> SRR1643194 1 0.2796 0.8053 0.908 0 0.092
#> SRR1643195 1 0.0237 0.8577 0.996 0 0.004
#> SRR1643196 1 0.0237 0.8577 0.996 0 0.004
#> SRR1643197 1 0.3482 0.7697 0.872 0 0.128
#> SRR1643198 1 0.3412 0.7739 0.876 0 0.124
#> SRR1643199 1 0.5254 0.5724 0.736 0 0.264
#> SRR1643200 1 0.5216 0.5802 0.740 0 0.260
#> SRR1643201 1 0.2537 0.8137 0.920 0 0.080
#> SRR1643202 1 0.2537 0.8137 0.920 0 0.080
#> SRR1643203 1 0.3686 0.7566 0.860 0 0.140
#> SRR1643204 1 0.3686 0.7566 0.860 0 0.140
#> SRR1643205 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643206 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643207 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643208 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643209 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643210 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643211 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643212 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643213 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643214 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643215 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643216 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643217 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643218 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643219 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643220 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643221 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643222 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643223 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643224 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643225 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643226 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643227 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643228 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643229 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643230 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643231 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643232 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643233 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643234 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643235 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643236 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643237 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643238 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643239 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643240 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643241 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643242 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643243 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643245 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643246 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643247 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643248 3 0.4974 0.9733 0.236 0 0.764
#> SRR1643249 3 0.5016 0.9676 0.240 0 0.760
#> SRR1643250 1 0.0237 0.8577 0.996 0 0.004
#> SRR1643251 1 0.0237 0.8577 0.996 0 0.004
#> SRR1643252 1 0.0237 0.8577 0.996 0 0.004
#> SRR1643253 1 0.0237 0.8577 0.996 0 0.004
#> SRR1643254 1 0.0237 0.8577 0.996 0 0.004
#> SRR1643255 1 0.0237 0.8577 0.996 0 0.004
#> SRR1643256 1 0.0237 0.8577 0.996 0 0.004
#> SRR1643257 1 0.0237 0.8577 0.996 0 0.004
#> SRR1643258 1 0.0237 0.8577 0.996 0 0.004
#> SRR1643259 1 0.0237 0.8577 0.996 0 0.004
#> SRR1643260 1 0.0237 0.8577 0.996 0 0.004
#> SRR1643261 1 0.0424 0.8575 0.992 0 0.008
#> SRR1643262 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643263 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643264 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643266 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643267 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643268 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643269 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643270 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643271 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643272 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643273 1 0.1163 0.8520 0.972 0 0.028
#> SRR1643274 1 0.1411 0.8480 0.964 0 0.036
#> SRR1643275 1 0.1163 0.8520 0.972 0 0.028
#> SRR1643276 1 0.1163 0.8520 0.972 0 0.028
#> SRR1643277 1 0.1411 0.8480 0.964 0 0.036
#> SRR1643278 1 0.0747 0.8559 0.984 0 0.016
#> SRR1643279 1 0.0892 0.8550 0.980 0 0.020
#> SRR1643280 1 0.1289 0.8502 0.968 0 0.032
#> SRR1643281 1 0.0892 0.8550 0.980 0 0.020
#> SRR1643282 1 0.1289 0.8502 0.968 0 0.032
#> SRR1643283 1 0.1163 0.8520 0.972 0 0.028
#> SRR1643284 1 0.1289 0.8502 0.968 0 0.032
#> SRR1643285 1 0.1529 0.8456 0.960 0 0.040
#> SRR1643286 1 0.1411 0.8483 0.964 0 0.036
#> SRR1643287 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643288 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643289 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643290 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643291 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643292 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643293 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643294 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643295 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643296 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643297 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643298 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643299 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643300 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643301 1 0.0424 0.8574 0.992 0 0.008
#> SRR1643302 1 0.0424 0.8574 0.992 0 0.008
#> SRR1643303 1 0.0424 0.8574 0.992 0 0.008
#> SRR1643304 1 0.0424 0.8574 0.992 0 0.008
#> SRR1643305 1 0.0237 0.8577 0.996 0 0.004
#> SRR1643306 1 0.0424 0.8574 0.992 0 0.008
#> SRR1643307 1 0.0424 0.8574 0.992 0 0.008
#> SRR1643308 1 0.0237 0.8577 0.996 0 0.004
#> SRR1643309 1 0.0424 0.8574 0.992 0 0.008
#> SRR1643310 1 0.0237 0.8577 0.996 0 0.004
#> SRR1643311 1 0.0424 0.8574 0.992 0 0.008
#> SRR1643312 1 0.0592 0.8567 0.988 0 0.012
#> SRR1643313 1 0.0592 0.8567 0.988 0 0.012
#> SRR1643314 1 0.1529 0.8457 0.960 0 0.040
#> SRR1643315 1 0.1289 0.8502 0.968 0 0.032
#> SRR1643316 1 0.0892 0.8549 0.980 0 0.020
#> SRR1643317 1 0.1289 0.8503 0.968 0 0.032
#> SRR1643318 1 0.1753 0.8404 0.952 0 0.048
#> SRR1643319 1 0.1289 0.8505 0.968 0 0.032
#> SRR1643320 1 0.1031 0.8536 0.976 0 0.024
#> SRR1643321 1 0.1411 0.8481 0.964 0 0.036
#> SRR1643322 1 0.1163 0.8519 0.972 0 0.028
#> SRR1643323 1 0.1643 0.8430 0.956 0 0.044
#> SRR1643324 1 0.0892 0.8549 0.980 0 0.020
#> SRR1643325 1 0.1753 0.8404 0.952 0 0.048
#> SRR1643326 1 0.1529 0.8457 0.960 0 0.040
#> SRR1643327 1 0.1411 0.8482 0.964 0 0.036
#> SRR1643328 1 0.6204 0.0635 0.576 0 0.424
#> SRR1643329 1 0.6309 -0.2910 0.504 0 0.496
#> SRR1643330 1 0.6305 -0.2384 0.516 0 0.484
#> SRR1643331 1 0.5905 0.3475 0.648 0 0.352
#> SRR1643332 1 0.6286 -0.1437 0.536 0 0.464
#> SRR1643333 1 0.6168 0.1213 0.588 0 0.412
#> SRR1643334 1 0.5926 0.3349 0.644 0 0.356
#> SRR1643335 1 0.6168 0.1212 0.588 0 0.412
#> SRR1643336 1 0.6168 0.1208 0.588 0 0.412
#> SRR1643337 1 0.5905 0.3476 0.648 0 0.352
#> SRR1643338 1 0.6168 0.1212 0.588 0 0.412
#> SRR1643339 1 0.6095 0.2056 0.608 0 0.392
#> SRR1643340 1 0.6215 0.0436 0.572 0 0.428
#> SRR1643341 1 0.6305 -0.2380 0.516 0 0.484
#> SRR1643342 1 0.6126 0.1738 0.600 0 0.400
#> SRR1643343 1 0.0892 0.8549 0.980 0 0.020
#> SRR1643344 1 0.0747 0.8559 0.984 0 0.016
#> SRR1643345 1 0.0892 0.8549 0.980 0 0.020
#> SRR1643346 1 0.0892 0.8549 0.980 0 0.020
#> SRR1643347 1 0.0892 0.8549 0.980 0 0.020
#> SRR1643348 1 0.0892 0.8549 0.980 0 0.020
#> SRR1643349 1 0.0747 0.8559 0.984 0 0.016
#> SRR1643350 1 0.0747 0.8559 0.984 0 0.016
#> SRR1643351 1 0.0892 0.8549 0.980 0 0.020
#> SRR1643352 1 0.0747 0.8559 0.984 0 0.016
#> SRR1643353 1 0.0892 0.8549 0.980 0 0.020
#> SRR1643354 1 0.0892 0.8549 0.980 0 0.020
#> SRR1643355 1 0.0424 0.8575 0.992 0 0.008
#> SRR1643356 1 0.0892 0.8549 0.980 0 0.020
#> SRR1643357 1 0.0892 0.8549 0.980 0 0.020
#> SRR1643358 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643359 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643360 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643361 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643362 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643363 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643364 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643365 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643366 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643367 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643368 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643369 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643370 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643371 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643372 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643373 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643374 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643375 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643376 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643377 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643378 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643379 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643380 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643381 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643382 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643383 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643384 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643385 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643386 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643387 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643388 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643389 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643390 1 0.5098 0.6026 0.752 0 0.248
#> SRR1643391 1 0.5216 0.5802 0.740 0 0.260
#> SRR1643392 1 0.5785 0.4079 0.668 0 0.332
#> SRR1643393 1 0.4974 0.6237 0.764 0 0.236
#> SRR1643394 1 0.5529 0.5021 0.704 0 0.296
#> SRR1643395 1 0.5291 0.5638 0.732 0 0.268
#> SRR1643396 1 0.4887 0.6366 0.772 0 0.228
#> SRR1643397 1 0.5098 0.6024 0.752 0 0.248
#> SRR1643398 1 0.4974 0.6234 0.764 0 0.236
#> SRR1643399 1 0.5058 0.6099 0.756 0 0.244
#> SRR1643400 1 0.5363 0.5472 0.724 0 0.276
#> SRR1643401 1 0.5529 0.5022 0.704 0 0.296
#> SRR1643402 1 0.5291 0.5639 0.732 0 0.268
#> SRR1643403 1 0.5098 0.6035 0.752 0 0.248
#> SRR1643404 1 0.5058 0.6098 0.756 0 0.244
#> SRR1643405 1 0.6267 -0.0882 0.548 0 0.452
#> SRR1643406 1 0.6204 0.0626 0.576 0 0.424
#> SRR1643407 3 0.6280 0.4501 0.460 0 0.540
#> SRR1643408 1 0.6309 -0.2921 0.504 0 0.496
#> SRR1643409 1 0.6215 0.0421 0.572 0 0.428
#> SRR1643410 1 0.6154 0.1380 0.592 0 0.408
#> SRR1643411 1 0.6252 -0.0461 0.556 0 0.444
#> SRR1643412 1 0.6309 -0.2931 0.504 0 0.496
#> SRR1643413 3 0.6309 0.3097 0.496 0 0.504
#> SRR1643414 1 0.6140 0.1559 0.596 0 0.404
#> SRR1643415 1 0.6274 -0.1046 0.544 0 0.456
#> SRR1643416 1 0.6291 -0.1632 0.532 0 0.468
#> SRR1643417 1 0.6252 -0.0438 0.556 0 0.444
#> SRR1643418 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643419 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643420 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643421 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643422 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643423 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643424 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643425 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643426 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643427 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643428 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643429 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643430 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643431 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643432 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643433 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643434 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643435 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643436 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643437 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643438 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643439 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643440 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643441 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643442 1 0.0000 0.8575 1.000 0 0.000
#> SRR1643443 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643444 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643445 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643446 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643447 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643448 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643449 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643450 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643451 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643452 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643453 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643454 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643455 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643456 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643457 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643458 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643459 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643460 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643461 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643462 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643463 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643464 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643466 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643467 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643468 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643469 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643470 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643471 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643472 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643473 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643474 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643475 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643477 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643478 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643479 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643480 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643481 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643482 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643483 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643484 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643485 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643486 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643487 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643488 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643489 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643490 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643491 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643492 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643493 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643494 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643495 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643496 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643497 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643498 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643499 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643500 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643501 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643502 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643503 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643504 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643505 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643506 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643507 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643508 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643509 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643510 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643511 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643512 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643513 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643531 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643532 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643533 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643534 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643535 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643536 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643537 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643538 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643539 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643540 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643541 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643542 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643543 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643544 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643514 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643515 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643516 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643517 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643518 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643519 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643520 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643521 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643522 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643523 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643524 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643525 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643526 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643527 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643528 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643529 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643530 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643545 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643546 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643547 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643548 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643549 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643550 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643551 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643552 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643553 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643554 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643555 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643556 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643558 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643559 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643560 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643561 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643562 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643563 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643564 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643565 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643566 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643567 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643568 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643569 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643570 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643571 2 0.0000 1.0000 0.000 1 0.000
#> SRR1643572 2 0.0000 1.0000 0.000 1 0.000
cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#> class entropy silhouette p1 p2 p3 p4
#> SRR1643167 1 0.5962 0.761 0.692 0.000 0.180 0.128
#> SRR1643168 1 0.5962 0.761 0.692 0.000 0.180 0.128
#> SRR1643169 1 0.5923 0.765 0.696 0.000 0.176 0.128
#> SRR1643170 1 0.6039 0.755 0.684 0.000 0.188 0.128
#> SRR1643171 1 0.6147 0.744 0.672 0.000 0.200 0.128
#> SRR1643172 1 0.6147 0.744 0.672 0.000 0.200 0.128
#> SRR1643173 1 0.6181 0.740 0.668 0.000 0.204 0.128
#> SRR1643174 1 0.6147 0.744 0.672 0.000 0.200 0.128
#> SRR1643175 1 0.5116 0.809 0.764 0.000 0.108 0.128
#> SRR1643176 1 0.5006 0.814 0.772 0.000 0.104 0.124
#> SRR1643177 1 0.4827 0.819 0.784 0.000 0.092 0.124
#> SRR1643178 1 0.5063 0.812 0.768 0.000 0.108 0.124
#> SRR1643180 1 0.6296 0.721 0.652 0.000 0.224 0.124
#> SRR1643181 1 0.6296 0.721 0.652 0.000 0.224 0.124
#> SRR1643182 1 0.6357 0.712 0.644 0.000 0.232 0.124
#> SRR1643183 1 0.5883 0.767 0.700 0.000 0.172 0.128
#> SRR1643184 1 0.5923 0.764 0.696 0.000 0.176 0.128
#> SRR1643185 1 0.5923 0.764 0.696 0.000 0.176 0.128
#> SRR1643186 1 0.5842 0.771 0.704 0.000 0.168 0.128
#> SRR1643187 1 0.4552 0.827 0.800 0.000 0.072 0.128
#> SRR1643188 1 0.4552 0.827 0.800 0.000 0.072 0.128
#> SRR1643189 1 0.4552 0.827 0.800 0.000 0.072 0.128
#> SRR1643190 1 0.4552 0.827 0.800 0.000 0.072 0.128
#> SRR1643191 3 0.6985 -0.169 0.404 0.000 0.480 0.116
#> SRR1643192 3 0.6985 -0.169 0.404 0.000 0.480 0.116
#> SRR1643193 1 0.4827 0.819 0.784 0.000 0.092 0.124
#> SRR1643194 1 0.4827 0.819 0.784 0.000 0.092 0.124
#> SRR1643195 1 0.3105 0.845 0.868 0.000 0.012 0.120
#> SRR1643196 1 0.3047 0.846 0.872 0.000 0.012 0.116
#> SRR1643197 1 0.4948 0.815 0.776 0.000 0.100 0.124
#> SRR1643198 1 0.4948 0.815 0.776 0.000 0.100 0.124
#> SRR1643199 1 0.6075 0.752 0.680 0.000 0.192 0.128
#> SRR1643200 1 0.6039 0.755 0.684 0.000 0.188 0.128
#> SRR1643201 1 0.4356 0.832 0.812 0.000 0.064 0.124
#> SRR1643202 1 0.4356 0.832 0.812 0.000 0.064 0.124
#> SRR1643203 1 0.5332 0.800 0.748 0.000 0.124 0.128
#> SRR1643204 1 0.5383 0.798 0.744 0.000 0.128 0.128
#> SRR1643205 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643206 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643207 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643208 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643209 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643210 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643211 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643212 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643213 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643214 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643215 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643216 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643217 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643218 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643219 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643220 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643221 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643222 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643223 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643224 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643225 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643226 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643227 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643228 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643229 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643230 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643231 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643232 3 0.0469 0.964 0.012 0.000 0.988 0.000
#> SRR1643233 3 0.0188 0.967 0.000 0.000 0.996 0.004
#> SRR1643234 3 0.0188 0.967 0.000 0.000 0.996 0.004
#> SRR1643235 3 0.0336 0.969 0.008 0.000 0.992 0.000
#> SRR1643236 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643237 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643238 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643239 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643240 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643241 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643242 3 0.0000 0.969 0.000 0.000 1.000 0.000
#> SRR1643243 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643245 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643246 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643247 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643248 3 0.0188 0.973 0.004 0.000 0.996 0.000
#> SRR1643249 3 0.0188 0.967 0.000 0.000 0.996 0.004
#> SRR1643250 1 0.0779 0.858 0.980 0.000 0.004 0.016
#> SRR1643251 1 0.0657 0.858 0.984 0.000 0.004 0.012
#> SRR1643252 1 0.0657 0.858 0.984 0.000 0.004 0.012
#> SRR1643253 1 0.0657 0.858 0.984 0.000 0.004 0.012
#> SRR1643254 1 0.0657 0.858 0.984 0.000 0.004 0.012
#> SRR1643255 1 0.0657 0.858 0.984 0.000 0.004 0.012
#> SRR1643256 1 0.0469 0.857 0.988 0.000 0.000 0.012
#> SRR1643257 1 0.0927 0.857 0.976 0.000 0.008 0.016
#> SRR1643258 1 0.0592 0.858 0.984 0.000 0.000 0.016
#> SRR1643259 1 0.0804 0.858 0.980 0.000 0.008 0.012
#> SRR1643260 1 0.0804 0.858 0.980 0.000 0.008 0.012
#> SRR1643261 1 0.0657 0.858 0.984 0.000 0.004 0.012
#> SRR1643262 1 0.0592 0.857 0.984 0.000 0.000 0.016
#> SRR1643263 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643264 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643266 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643267 1 0.0592 0.857 0.984 0.000 0.000 0.016
#> SRR1643268 1 0.0592 0.857 0.984 0.000 0.000 0.016
#> SRR1643269 1 0.0592 0.857 0.984 0.000 0.000 0.016
#> SRR1643270 1 0.0592 0.857 0.984 0.000 0.000 0.016
#> SRR1643271 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643272 1 0.0592 0.857 0.984 0.000 0.000 0.016
#> SRR1643273 1 0.3687 0.843 0.856 0.000 0.064 0.080
#> SRR1643274 1 0.3828 0.841 0.848 0.000 0.068 0.084
#> SRR1643275 1 0.4071 0.837 0.832 0.000 0.064 0.104
#> SRR1643276 1 0.3687 0.843 0.856 0.000 0.064 0.080
#> SRR1643277 1 0.4083 0.837 0.832 0.000 0.068 0.100
#> SRR1643278 1 0.4301 0.832 0.816 0.000 0.064 0.120
#> SRR1643279 1 0.3885 0.840 0.844 0.000 0.064 0.092
#> SRR1643280 1 0.4203 0.835 0.824 0.000 0.068 0.108
#> SRR1643281 1 0.4203 0.835 0.824 0.000 0.068 0.108
#> SRR1643282 1 0.4203 0.835 0.824 0.000 0.068 0.108
#> SRR1643283 1 0.4301 0.832 0.816 0.000 0.064 0.120
#> SRR1643284 1 0.3894 0.840 0.844 0.000 0.068 0.088
#> SRR1643285 1 0.3617 0.844 0.860 0.000 0.064 0.076
#> SRR1643286 1 0.4374 0.831 0.812 0.000 0.068 0.120
#> SRR1643287 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643288 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643289 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643290 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643291 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643292 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643293 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643294 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643295 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643296 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643297 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643298 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643299 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643300 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643301 1 0.1305 0.859 0.960 0.000 0.004 0.036
#> SRR1643302 1 0.1807 0.857 0.940 0.000 0.008 0.052
#> SRR1643303 1 0.1209 0.859 0.964 0.000 0.004 0.032
#> SRR1643304 1 0.1398 0.858 0.956 0.000 0.004 0.040
#> SRR1643305 1 0.1824 0.856 0.936 0.000 0.004 0.060
#> SRR1643306 1 0.2335 0.854 0.920 0.000 0.020 0.060
#> SRR1643307 1 0.0817 0.859 0.976 0.000 0.000 0.024
#> SRR1643308 1 0.1474 0.857 0.948 0.000 0.000 0.052
#> SRR1643309 1 0.1022 0.859 0.968 0.000 0.000 0.032
#> SRR1643310 1 0.1118 0.859 0.964 0.000 0.000 0.036
#> SRR1643311 1 0.0817 0.859 0.976 0.000 0.000 0.024
#> SRR1643312 1 0.2060 0.856 0.932 0.000 0.016 0.052
#> SRR1643313 1 0.0921 0.859 0.972 0.000 0.000 0.028
#> SRR1643314 1 0.4301 0.832 0.816 0.000 0.064 0.120
#> SRR1643315 1 0.4301 0.832 0.816 0.000 0.064 0.120
#> SRR1643316 1 0.4282 0.833 0.816 0.000 0.060 0.124
#> SRR1643317 1 0.4301 0.832 0.816 0.000 0.064 0.120
#> SRR1643318 1 0.4428 0.829 0.808 0.000 0.068 0.124
#> SRR1643319 1 0.4428 0.829 0.808 0.000 0.068 0.124
#> SRR1643320 1 0.4356 0.831 0.812 0.000 0.064 0.124
#> SRR1643321 1 0.4356 0.831 0.812 0.000 0.064 0.124
#> SRR1643322 1 0.4356 0.831 0.812 0.000 0.064 0.124
#> SRR1643323 1 0.4356 0.831 0.812 0.000 0.064 0.124
#> SRR1643324 1 0.4356 0.831 0.812 0.000 0.064 0.124
#> SRR1643325 1 0.4428 0.829 0.808 0.000 0.068 0.124
#> SRR1643326 1 0.4301 0.832 0.816 0.000 0.064 0.120
#> SRR1643327 1 0.4356 0.831 0.812 0.000 0.064 0.124
#> SRR1643328 1 0.6327 0.716 0.648 0.000 0.228 0.124
#> SRR1643329 1 0.6685 0.640 0.592 0.000 0.284 0.124
#> SRR1643330 1 0.6595 0.665 0.608 0.000 0.268 0.124
#> SRR1643331 1 0.6098 0.745 0.676 0.000 0.200 0.124
#> SRR1643332 1 0.6521 0.681 0.620 0.000 0.256 0.124
#> SRR1643333 1 0.6327 0.716 0.648 0.000 0.228 0.124
#> SRR1643334 1 0.6133 0.741 0.672 0.000 0.204 0.124
#> SRR1643335 1 0.6357 0.711 0.644 0.000 0.232 0.124
#> SRR1643336 1 0.6296 0.721 0.652 0.000 0.224 0.124
#> SRR1643337 1 0.6133 0.741 0.672 0.000 0.204 0.124
#> SRR1643338 1 0.6357 0.711 0.644 0.000 0.232 0.124
#> SRR1643339 1 0.6233 0.729 0.660 0.000 0.216 0.124
#> SRR1643340 1 0.6386 0.707 0.640 0.000 0.236 0.124
#> SRR1643341 1 0.6595 0.665 0.608 0.000 0.268 0.124
#> SRR1643342 1 0.6265 0.725 0.656 0.000 0.220 0.124
#> SRR1643343 1 0.0804 0.859 0.980 0.000 0.012 0.008
#> SRR1643344 1 0.0804 0.860 0.980 0.000 0.008 0.012
#> SRR1643345 1 0.1182 0.860 0.968 0.000 0.016 0.016
#> SRR1643346 1 0.1174 0.860 0.968 0.000 0.020 0.012
#> SRR1643347 1 0.0524 0.859 0.988 0.000 0.004 0.008
#> SRR1643348 1 0.0657 0.859 0.984 0.000 0.012 0.004
#> SRR1643349 1 0.1174 0.860 0.968 0.000 0.012 0.020
#> SRR1643350 1 0.0804 0.859 0.980 0.000 0.008 0.012
#> SRR1643351 1 0.1174 0.860 0.968 0.000 0.020 0.012
#> SRR1643352 1 0.0804 0.860 0.980 0.000 0.012 0.008
#> SRR1643353 1 0.0779 0.860 0.980 0.000 0.004 0.016
#> SRR1643354 1 0.0657 0.859 0.984 0.000 0.004 0.012
#> SRR1643355 1 0.0895 0.859 0.976 0.000 0.004 0.020
#> SRR1643356 1 0.1724 0.859 0.948 0.000 0.032 0.020
#> SRR1643357 1 0.0804 0.860 0.980 0.000 0.008 0.012
#> SRR1643358 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643359 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643360 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643361 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643362 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643363 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643364 1 0.0592 0.857 0.984 0.000 0.000 0.016
#> SRR1643365 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643366 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643367 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643368 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643369 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643370 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643371 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643372 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643373 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643374 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643375 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643376 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643377 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643378 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643379 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643380 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643381 1 0.0592 0.857 0.984 0.000 0.000 0.016
#> SRR1643382 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643383 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643384 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643385 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643386 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643387 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643388 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643389 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643390 1 0.5874 0.766 0.700 0.000 0.176 0.124
#> SRR1643391 1 0.5990 0.757 0.688 0.000 0.188 0.124
#> SRR1643392 1 0.6063 0.749 0.680 0.000 0.196 0.124
#> SRR1643393 1 0.5792 0.772 0.708 0.000 0.168 0.124
#> SRR1643394 1 0.5952 0.760 0.692 0.000 0.184 0.124
#> SRR1643395 1 0.5834 0.769 0.704 0.000 0.172 0.124
#> SRR1643396 1 0.5834 0.770 0.704 0.000 0.172 0.124
#> SRR1643397 1 0.5751 0.775 0.712 0.000 0.164 0.124
#> SRR1643398 1 0.5751 0.775 0.712 0.000 0.164 0.124
#> SRR1643399 1 0.5708 0.778 0.716 0.000 0.160 0.124
#> SRR1643400 1 0.5792 0.772 0.708 0.000 0.168 0.124
#> SRR1643401 1 0.5913 0.763 0.696 0.000 0.180 0.124
#> SRR1643402 1 0.5874 0.766 0.700 0.000 0.176 0.124
#> SRR1643403 1 0.5792 0.772 0.708 0.000 0.168 0.124
#> SRR1643404 1 0.5834 0.769 0.704 0.000 0.172 0.124
#> SRR1643405 1 0.6726 0.627 0.584 0.000 0.292 0.124
#> SRR1643406 1 0.6547 0.676 0.616 0.000 0.260 0.124
#> SRR1643407 1 0.7069 0.374 0.468 0.000 0.408 0.124
#> SRR1643408 1 0.6852 0.577 0.556 0.000 0.320 0.124
#> SRR1643409 1 0.6547 0.676 0.616 0.000 0.260 0.124
#> SRR1643410 1 0.6547 0.676 0.616 0.000 0.260 0.124
#> SRR1643411 1 0.6706 0.633 0.588 0.000 0.288 0.124
#> SRR1643412 1 0.6882 0.562 0.548 0.000 0.328 0.124
#> SRR1643413 1 0.6961 0.512 0.524 0.000 0.352 0.124
#> SRR1643414 1 0.6571 0.670 0.612 0.000 0.264 0.124
#> SRR1643415 1 0.6663 0.646 0.596 0.000 0.280 0.124
#> SRR1643416 1 0.6897 0.554 0.544 0.000 0.332 0.124
#> SRR1643417 1 0.6819 0.592 0.564 0.000 0.312 0.124
#> SRR1643418 1 0.0927 0.854 0.976 0.000 0.008 0.016
#> SRR1643419 1 0.0927 0.854 0.976 0.000 0.008 0.016
#> SRR1643420 1 0.0927 0.854 0.976 0.000 0.008 0.016
#> SRR1643421 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643422 1 0.0927 0.854 0.976 0.000 0.008 0.016
#> SRR1643423 1 0.0927 0.854 0.976 0.000 0.008 0.016
#> SRR1643424 1 0.0927 0.854 0.976 0.000 0.008 0.016
#> SRR1643425 1 0.0927 0.854 0.976 0.000 0.008 0.016
#> SRR1643426 1 0.0927 0.854 0.976 0.000 0.008 0.016
#> SRR1643427 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643428 1 0.0927 0.854 0.976 0.000 0.008 0.016
#> SRR1643429 1 0.0927 0.854 0.976 0.000 0.008 0.016
#> SRR1643430 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643431 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643432 1 0.0927 0.854 0.976 0.000 0.008 0.016
#> SRR1643433 1 0.0927 0.854 0.976 0.000 0.008 0.016
#> SRR1643434 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643435 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643436 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643437 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643438 1 0.0927 0.854 0.976 0.000 0.008 0.016
#> SRR1643439 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643440 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643441 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643442 1 0.0779 0.856 0.980 0.000 0.004 0.016
#> SRR1643443 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643444 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643445 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643446 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643447 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643448 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643449 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643450 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643451 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643452 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643453 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643454 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643455 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643456 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643457 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643458 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643459 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643460 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643461 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643462 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643463 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643464 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643466 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643467 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643468 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643469 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643470 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643471 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643472 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643473 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643474 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643475 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643477 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643478 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643479 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643480 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643481 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643482 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643483 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643484 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643485 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643486 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643487 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643488 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643489 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643490 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643491 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643492 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643493 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643494 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643495 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643496 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643497 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643498 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643499 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643500 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643501 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643502 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643503 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643504 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643505 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643506 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643507 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643508 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643509 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643510 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643511 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643512 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643513 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643531 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643532 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643533 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643534 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643535 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643536 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643537 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643538 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643539 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643540 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643541 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643542 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643543 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643544 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643514 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643515 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643516 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643517 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643518 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643519 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643520 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643521 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643522 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643523 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643524 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643525 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643526 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643527 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643528 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643529 2 0.0336 0.995 0.000 0.992 0.000 0.008
#> SRR1643530 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643545 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643546 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643547 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643548 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643549 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643550 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643551 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643552 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643553 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643554 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643555 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643556 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643558 2 0.0000 0.999 0.000 1.000 0.000 0.000
#> SRR1643559 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643560 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643561 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643562 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643563 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643564 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643565 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643566 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643567 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643568 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643569 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643570 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643571 2 0.0188 0.998 0.000 0.996 0.000 0.004
#> SRR1643572 2 0.0188 0.998 0.000 0.996 0.000 0.004
cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#> class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167 1 0.2377 0.9185 0.872 0.000 0.000 0.128 0.000
#> SRR1643168 1 0.2377 0.9183 0.872 0.000 0.000 0.128 0.000
#> SRR1643169 1 0.2329 0.9170 0.876 0.000 0.000 0.124 0.000
#> SRR1643170 1 0.2377 0.9183 0.872 0.000 0.000 0.128 0.000
#> SRR1643171 1 0.2280 0.9153 0.880 0.000 0.000 0.120 0.000
#> SRR1643172 1 0.2280 0.9153 0.880 0.000 0.000 0.120 0.000
#> SRR1643173 1 0.2280 0.9153 0.880 0.000 0.000 0.120 0.000
#> SRR1643174 1 0.2230 0.9131 0.884 0.000 0.000 0.116 0.000
#> SRR1643175 1 0.2424 0.9202 0.868 0.000 0.000 0.132 0.000
#> SRR1643176 1 0.2424 0.9202 0.868 0.000 0.000 0.132 0.000
#> SRR1643177 1 0.2424 0.9202 0.868 0.000 0.000 0.132 0.000
#> SRR1643178 1 0.2424 0.9202 0.868 0.000 0.000 0.132 0.000
#> SRR1643180 1 0.2583 0.9191 0.864 0.000 0.004 0.132 0.000
#> SRR1643181 1 0.2674 0.9205 0.856 0.000 0.004 0.140 0.000
#> SRR1643182 1 0.2707 0.9188 0.860 0.000 0.008 0.132 0.000
#> SRR1643183 1 0.2179 0.9108 0.888 0.000 0.000 0.112 0.000
#> SRR1643184 1 0.2179 0.9108 0.888 0.000 0.000 0.112 0.000
#> SRR1643185 1 0.2179 0.9108 0.888 0.000 0.000 0.112 0.000
#> SRR1643186 1 0.2179 0.9108 0.888 0.000 0.000 0.112 0.000
#> SRR1643187 1 0.2020 0.9012 0.900 0.000 0.000 0.100 0.000
#> SRR1643188 1 0.1965 0.8976 0.904 0.000 0.000 0.096 0.000
#> SRR1643189 1 0.2020 0.9012 0.900 0.000 0.000 0.100 0.000
#> SRR1643190 1 0.2020 0.9012 0.900 0.000 0.000 0.100 0.000
#> SRR1643191 1 0.3692 0.8943 0.812 0.000 0.052 0.136 0.000
#> SRR1643192 1 0.3622 0.8972 0.816 0.000 0.048 0.136 0.000
#> SRR1643193 1 0.2516 0.9206 0.860 0.000 0.000 0.140 0.000
#> SRR1643194 1 0.2516 0.9206 0.860 0.000 0.000 0.140 0.000
#> SRR1643195 1 0.3707 0.8098 0.716 0.000 0.000 0.284 0.000
#> SRR1643196 1 0.3707 0.8098 0.716 0.000 0.000 0.284 0.000
#> SRR1643197 1 0.2852 0.9104 0.828 0.000 0.000 0.172 0.000
#> SRR1643198 1 0.2852 0.9104 0.828 0.000 0.000 0.172 0.000
#> SRR1643199 1 0.2389 0.9116 0.880 0.000 0.004 0.116 0.000
#> SRR1643200 1 0.2179 0.9110 0.888 0.000 0.000 0.112 0.000
#> SRR1643201 1 0.3003 0.9014 0.812 0.000 0.000 0.188 0.000
#> SRR1643202 1 0.2966 0.9039 0.816 0.000 0.000 0.184 0.000
#> SRR1643203 1 0.2074 0.9058 0.896 0.000 0.000 0.104 0.000
#> SRR1643204 1 0.2074 0.9058 0.896 0.000 0.000 0.104 0.000
#> SRR1643205 3 0.0912 0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643206 3 0.0912 0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643207 3 0.1018 0.9910 0.016 0.000 0.968 0.016 0.000
#> SRR1643208 3 0.1018 0.9910 0.016 0.000 0.968 0.016 0.000
#> SRR1643209 3 0.1281 0.9853 0.032 0.000 0.956 0.012 0.000
#> SRR1643210 3 0.1281 0.9853 0.032 0.000 0.956 0.012 0.000
#> SRR1643211 3 0.0912 0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643212 3 0.0912 0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643213 3 0.1018 0.9910 0.016 0.000 0.968 0.016 0.000
#> SRR1643214 3 0.1018 0.9910 0.016 0.000 0.968 0.016 0.000
#> SRR1643215 3 0.1195 0.9870 0.028 0.000 0.960 0.012 0.000
#> SRR1643216 3 0.1195 0.9870 0.028 0.000 0.960 0.012 0.000
#> SRR1643217 3 0.1281 0.9853 0.032 0.000 0.956 0.012 0.000
#> SRR1643218 3 0.1281 0.9853 0.032 0.000 0.956 0.012 0.000
#> SRR1643219 3 0.1106 0.9885 0.024 0.000 0.964 0.012 0.000
#> SRR1643220 3 0.1106 0.9885 0.024 0.000 0.964 0.012 0.000
#> SRR1643221 3 0.0912 0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643222 3 0.0912 0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643223 3 0.0912 0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643224 3 0.0912 0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643225 3 0.0912 0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643226 3 0.0912 0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643227 3 0.1018 0.9910 0.016 0.000 0.968 0.016 0.000
#> SRR1643228 3 0.1018 0.9910 0.016 0.000 0.968 0.016 0.000
#> SRR1643229 3 0.1281 0.9853 0.032 0.000 0.956 0.012 0.000
#> SRR1643230 3 0.0912 0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643231 3 0.0912 0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643232 3 0.1018 0.9904 0.016 0.000 0.968 0.016 0.000
#> SRR1643233 3 0.2069 0.9470 0.076 0.000 0.912 0.012 0.000
#> SRR1643234 3 0.2006 0.9514 0.072 0.000 0.916 0.012 0.000
#> SRR1643235 3 0.1018 0.9904 0.016 0.000 0.968 0.016 0.000
#> SRR1643236 3 0.0912 0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643237 3 0.0912 0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643238 3 0.0912 0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643239 3 0.0912 0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643240 3 0.0912 0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643241 3 0.0912 0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643242 3 0.1281 0.9853 0.032 0.000 0.956 0.012 0.000
#> SRR1643243 3 0.1012 0.9895 0.020 0.000 0.968 0.012 0.000
#> SRR1643245 3 0.0912 0.9901 0.016 0.000 0.972 0.012 0.000
#> SRR1643246 3 0.1012 0.9895 0.020 0.000 0.968 0.012 0.000
#> SRR1643247 3 0.1012 0.9895 0.020 0.000 0.968 0.012 0.000
#> SRR1643248 3 0.1106 0.9890 0.024 0.000 0.964 0.012 0.000
#> SRR1643249 3 0.1809 0.9619 0.060 0.000 0.928 0.012 0.000
#> SRR1643250 4 0.1697 0.8506 0.060 0.000 0.008 0.932 0.000
#> SRR1643251 4 0.1764 0.8481 0.064 0.000 0.008 0.928 0.000
#> SRR1643252 4 0.1830 0.8451 0.068 0.000 0.008 0.924 0.000
#> SRR1643253 4 0.2230 0.8032 0.116 0.000 0.000 0.884 0.000
#> SRR1643254 4 0.2286 0.8108 0.108 0.000 0.004 0.888 0.000
#> SRR1643255 4 0.1697 0.8506 0.060 0.000 0.008 0.932 0.000
#> SRR1643256 4 0.1831 0.8400 0.076 0.000 0.004 0.920 0.000
#> SRR1643257 4 0.1697 0.8506 0.060 0.000 0.008 0.932 0.000
#> SRR1643258 4 0.2583 0.7859 0.132 0.000 0.004 0.864 0.000
#> SRR1643259 4 0.1894 0.8417 0.072 0.000 0.008 0.920 0.000
#> SRR1643260 4 0.2017 0.8351 0.080 0.000 0.008 0.912 0.000
#> SRR1643261 4 0.1830 0.8449 0.068 0.000 0.008 0.924 0.000
#> SRR1643262 4 0.0794 0.8696 0.028 0.000 0.000 0.972 0.000
#> SRR1643263 4 0.0794 0.8696 0.028 0.000 0.000 0.972 0.000
#> SRR1643264 4 0.0794 0.8696 0.028 0.000 0.000 0.972 0.000
#> SRR1643266 4 0.0794 0.8696 0.028 0.000 0.000 0.972 0.000
#> SRR1643267 4 0.0880 0.8682 0.032 0.000 0.000 0.968 0.000
#> SRR1643268 4 0.0794 0.8696 0.028 0.000 0.000 0.972 0.000
#> SRR1643269 4 0.0880 0.8682 0.032 0.000 0.000 0.968 0.000
#> SRR1643270 4 0.0794 0.8696 0.028 0.000 0.000 0.972 0.000
#> SRR1643271 4 0.0794 0.8696 0.028 0.000 0.000 0.972 0.000
#> SRR1643272 4 0.0880 0.8682 0.032 0.000 0.000 0.968 0.000
#> SRR1643273 1 0.4323 0.7045 0.656 0.000 0.000 0.332 0.012
#> SRR1643274 1 0.4270 0.7296 0.668 0.000 0.000 0.320 0.012
#> SRR1643275 1 0.4173 0.7681 0.688 0.000 0.000 0.300 0.012
#> SRR1643276 1 0.4339 0.6967 0.652 0.000 0.000 0.336 0.012
#> SRR1643277 1 0.4130 0.7823 0.696 0.000 0.000 0.292 0.012
#> SRR1643278 1 0.3992 0.8186 0.720 0.000 0.000 0.268 0.012
#> SRR1643279 1 0.4130 0.7823 0.696 0.000 0.000 0.292 0.012
#> SRR1643280 1 0.4152 0.7754 0.692 0.000 0.000 0.296 0.012
#> SRR1643281 1 0.4109 0.7885 0.700 0.000 0.000 0.288 0.012
#> SRR1643282 1 0.4086 0.7948 0.704 0.000 0.000 0.284 0.012
#> SRR1643283 1 0.4016 0.8129 0.716 0.000 0.000 0.272 0.012
#> SRR1643284 1 0.4193 0.7607 0.684 0.000 0.000 0.304 0.012
#> SRR1643285 1 0.4323 0.7045 0.656 0.000 0.000 0.332 0.012
#> SRR1643286 1 0.3967 0.8241 0.724 0.000 0.000 0.264 0.012
#> SRR1643287 4 0.1012 0.8654 0.012 0.000 0.000 0.968 0.020
#> SRR1643288 4 0.0912 0.8664 0.012 0.000 0.000 0.972 0.016
#> SRR1643289 4 0.0912 0.8664 0.012 0.000 0.000 0.972 0.016
#> SRR1643290 4 0.1012 0.8654 0.012 0.000 0.000 0.968 0.020
#> SRR1643291 4 0.1012 0.8654 0.012 0.000 0.000 0.968 0.020
#> SRR1643292 4 0.1012 0.8652 0.012 0.000 0.000 0.968 0.020
#> SRR1643293 4 0.1012 0.8654 0.012 0.000 0.000 0.968 0.020
#> SRR1643294 4 0.1012 0.8652 0.012 0.000 0.000 0.968 0.020
#> SRR1643295 4 0.1012 0.8654 0.012 0.000 0.000 0.968 0.020
#> SRR1643296 4 0.1012 0.8652 0.012 0.000 0.000 0.968 0.020
#> SRR1643297 4 0.0912 0.8664 0.012 0.000 0.000 0.972 0.016
#> SRR1643298 4 0.1012 0.8654 0.012 0.000 0.000 0.968 0.020
#> SRR1643299 4 0.0912 0.8664 0.012 0.000 0.000 0.972 0.016
#> SRR1643300 4 0.1012 0.8652 0.012 0.000 0.000 0.968 0.020
#> SRR1643301 4 0.4171 0.2587 0.396 0.000 0.000 0.604 0.000
#> SRR1643302 4 0.4227 0.1634 0.420 0.000 0.000 0.580 0.000
#> SRR1643303 4 0.3999 0.4170 0.344 0.000 0.000 0.656 0.000
#> SRR1643304 4 0.4210 0.1964 0.412 0.000 0.000 0.588 0.000
#> SRR1643305 4 0.4297 -0.0866 0.472 0.000 0.000 0.528 0.000
#> SRR1643306 4 0.4304 -0.1391 0.484 0.000 0.000 0.516 0.000
#> SRR1643307 4 0.3913 0.4723 0.324 0.000 0.000 0.676 0.000
#> SRR1643308 4 0.4256 0.0918 0.436 0.000 0.000 0.564 0.000
#> SRR1643309 4 0.4101 0.3398 0.372 0.000 0.000 0.628 0.000
#> SRR1643310 4 0.4182 0.2409 0.400 0.000 0.000 0.600 0.000
#> SRR1643311 4 0.3983 0.4325 0.340 0.000 0.000 0.660 0.000
#> SRR1643312 4 0.4256 0.0920 0.436 0.000 0.000 0.564 0.000
#> SRR1643313 4 0.4074 0.3634 0.364 0.000 0.000 0.636 0.000
#> SRR1643314 1 0.3586 0.8343 0.736 0.000 0.000 0.264 0.000
#> SRR1643315 1 0.3586 0.8343 0.736 0.000 0.000 0.264 0.000
#> SRR1643316 1 0.3561 0.8402 0.740 0.000 0.000 0.260 0.000
#> SRR1643317 1 0.3752 0.7959 0.708 0.000 0.000 0.292 0.000
#> SRR1643318 1 0.3452 0.8548 0.756 0.000 0.000 0.244 0.000
#> SRR1643319 1 0.3395 0.8625 0.764 0.000 0.000 0.236 0.000
#> SRR1643320 1 0.3480 0.8521 0.752 0.000 0.000 0.248 0.000
#> SRR1643321 1 0.3534 0.8431 0.744 0.000 0.000 0.256 0.000
#> SRR1643322 1 0.3561 0.8388 0.740 0.000 0.000 0.260 0.000
#> SRR1643323 1 0.3452 0.8544 0.756 0.000 0.000 0.244 0.000
#> SRR1643324 1 0.3561 0.8383 0.740 0.000 0.000 0.260 0.000
#> SRR1643325 1 0.3395 0.8619 0.764 0.000 0.000 0.236 0.000
#> SRR1643326 1 0.3684 0.8153 0.720 0.000 0.000 0.280 0.000
#> SRR1643327 1 0.3395 0.8625 0.764 0.000 0.000 0.236 0.000
#> SRR1643328 1 0.2806 0.9190 0.844 0.000 0.004 0.152 0.000
#> SRR1643329 1 0.2953 0.9191 0.844 0.000 0.012 0.144 0.000
#> SRR1643330 1 0.2953 0.9191 0.844 0.000 0.012 0.144 0.000
#> SRR1643331 1 0.2806 0.9190 0.844 0.000 0.004 0.152 0.000
#> SRR1643332 1 0.2886 0.9193 0.844 0.000 0.008 0.148 0.000
#> SRR1643333 1 0.2806 0.9190 0.844 0.000 0.004 0.152 0.000
#> SRR1643334 1 0.2763 0.9198 0.848 0.000 0.004 0.148 0.000
#> SRR1643335 1 0.2806 0.9190 0.844 0.000 0.004 0.152 0.000
#> SRR1643336 1 0.2806 0.9190 0.844 0.000 0.004 0.152 0.000
#> SRR1643337 1 0.2806 0.9193 0.844 0.000 0.004 0.152 0.000
#> SRR1643338 1 0.2763 0.9198 0.848 0.000 0.004 0.148 0.000
#> SRR1643339 1 0.2806 0.9190 0.844 0.000 0.004 0.152 0.000
#> SRR1643340 1 0.2909 0.9198 0.848 0.000 0.012 0.140 0.000
#> SRR1643341 1 0.3055 0.9181 0.840 0.000 0.016 0.144 0.000
#> SRR1643342 1 0.2806 0.9190 0.844 0.000 0.004 0.152 0.000
#> SRR1643343 4 0.4309 0.5059 0.308 0.000 0.000 0.676 0.016
#> SRR1643344 4 0.4482 0.4088 0.348 0.000 0.000 0.636 0.016
#> SRR1643345 4 0.4384 0.4721 0.324 0.000 0.000 0.660 0.016
#> SRR1643346 4 0.4620 0.2706 0.392 0.000 0.000 0.592 0.016
#> SRR1643347 4 0.4114 0.5790 0.272 0.000 0.000 0.712 0.016
#> SRR1643348 4 0.4138 0.5718 0.276 0.000 0.000 0.708 0.016
#> SRR1643349 4 0.4610 0.2816 0.388 0.000 0.000 0.596 0.016
#> SRR1643350 4 0.4525 0.3693 0.360 0.000 0.000 0.624 0.016
#> SRR1643351 4 0.4564 0.3353 0.372 0.000 0.000 0.612 0.016
#> SRR1643352 4 0.4467 0.4194 0.344 0.000 0.000 0.640 0.016
#> SRR1643353 4 0.4451 0.4300 0.340 0.000 0.000 0.644 0.016
#> SRR1643354 4 0.4206 0.5456 0.288 0.000 0.000 0.696 0.016
#> SRR1643355 4 0.4674 0.1742 0.416 0.000 0.000 0.568 0.016
#> SRR1643356 4 0.4329 0.5004 0.312 0.000 0.000 0.672 0.016
#> SRR1643357 4 0.4418 0.4517 0.332 0.000 0.000 0.652 0.016
#> SRR1643358 4 0.0703 0.8706 0.024 0.000 0.000 0.976 0.000
#> SRR1643359 4 0.0703 0.8706 0.024 0.000 0.000 0.976 0.000
#> SRR1643360 4 0.0609 0.8712 0.020 0.000 0.000 0.980 0.000
#> SRR1643361 4 0.0703 0.8706 0.024 0.000 0.000 0.976 0.000
#> SRR1643362 4 0.0609 0.8712 0.020 0.000 0.000 0.980 0.000
#> SRR1643363 4 0.0609 0.8712 0.020 0.000 0.000 0.980 0.000
#> SRR1643364 4 0.0703 0.8706 0.024 0.000 0.000 0.976 0.000
#> SRR1643365 4 0.0703 0.8706 0.024 0.000 0.000 0.976 0.000
#> SRR1643366 4 0.0609 0.8712 0.020 0.000 0.000 0.980 0.000
#> SRR1643367 4 0.0609 0.8712 0.020 0.000 0.000 0.980 0.000
#> SRR1643368 4 0.0703 0.8706 0.024 0.000 0.000 0.976 0.000
#> SRR1643369 4 0.0609 0.8712 0.020 0.000 0.000 0.980 0.000
#> SRR1643370 4 0.0865 0.8709 0.024 0.000 0.000 0.972 0.004
#> SRR1643371 4 0.0609 0.8712 0.020 0.000 0.000 0.980 0.000
#> SRR1643372 4 0.0609 0.8712 0.020 0.000 0.000 0.980 0.000
#> SRR1643373 4 0.0898 0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643374 4 0.0898 0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643375 4 0.0898 0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643376 4 0.0798 0.8704 0.016 0.000 0.000 0.976 0.008
#> SRR1643377 4 0.0898 0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643378 4 0.0898 0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643379 4 0.0898 0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643380 4 0.0771 0.8711 0.020 0.000 0.000 0.976 0.004
#> SRR1643381 4 0.0771 0.8711 0.020 0.000 0.000 0.976 0.004
#> SRR1643382 4 0.0898 0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643383 4 0.0898 0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643384 4 0.0898 0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643385 4 0.0771 0.8711 0.020 0.000 0.000 0.976 0.004
#> SRR1643386 4 0.0898 0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643387 4 0.0898 0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643388 4 0.0898 0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643389 4 0.0798 0.8704 0.016 0.000 0.000 0.976 0.008
#> SRR1643390 1 0.2424 0.9204 0.868 0.000 0.000 0.132 0.000
#> SRR1643391 1 0.2605 0.9200 0.852 0.000 0.000 0.148 0.000
#> SRR1643392 1 0.2561 0.9208 0.856 0.000 0.000 0.144 0.000
#> SRR1643393 1 0.2561 0.9204 0.856 0.000 0.000 0.144 0.000
#> SRR1643394 1 0.2516 0.9209 0.860 0.000 0.000 0.140 0.000
#> SRR1643395 1 0.2605 0.9203 0.852 0.000 0.000 0.148 0.000
#> SRR1643396 1 0.2127 0.9098 0.892 0.000 0.000 0.108 0.000
#> SRR1643397 1 0.2561 0.9202 0.856 0.000 0.000 0.144 0.000
#> SRR1643398 1 0.2516 0.9206 0.860 0.000 0.000 0.140 0.000
#> SRR1643399 1 0.2516 0.9209 0.860 0.000 0.000 0.140 0.000
#> SRR1643400 1 0.2424 0.9204 0.868 0.000 0.000 0.132 0.000
#> SRR1643401 1 0.2561 0.9206 0.856 0.000 0.000 0.144 0.000
#> SRR1643402 1 0.2329 0.9176 0.876 0.000 0.000 0.124 0.000
#> SRR1643403 1 0.2605 0.9200 0.852 0.000 0.000 0.148 0.000
#> SRR1643404 1 0.2629 0.9205 0.860 0.000 0.000 0.136 0.004
#> SRR1643405 1 0.2914 0.8970 0.872 0.000 0.012 0.100 0.016
#> SRR1643406 1 0.2748 0.8965 0.880 0.000 0.008 0.096 0.016
#> SRR1643407 1 0.2830 0.8780 0.884 0.000 0.020 0.080 0.016
#> SRR1643408 1 0.2967 0.8999 0.868 0.000 0.012 0.104 0.016
#> SRR1643409 1 0.2623 0.8991 0.884 0.000 0.004 0.096 0.016
#> SRR1643410 1 0.2519 0.9021 0.884 0.000 0.000 0.100 0.016
#> SRR1643411 1 0.2692 0.8945 0.884 0.000 0.008 0.092 0.016
#> SRR1643412 1 0.2635 0.8920 0.888 0.000 0.008 0.088 0.016
#> SRR1643413 1 0.2747 0.8886 0.884 0.000 0.012 0.088 0.016
#> SRR1643414 1 0.2568 0.8957 0.888 0.000 0.004 0.092 0.016
#> SRR1643415 1 0.2962 0.8934 0.872 0.000 0.016 0.096 0.016
#> SRR1643416 1 0.2623 0.8979 0.884 0.000 0.004 0.096 0.016
#> SRR1643417 1 0.2635 0.8895 0.888 0.000 0.008 0.088 0.016
#> SRR1643418 4 0.0324 0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643419 4 0.0324 0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643420 4 0.0324 0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643421 4 0.0486 0.8673 0.004 0.000 0.004 0.988 0.004
#> SRR1643422 4 0.0324 0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643423 4 0.0324 0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643424 4 0.0324 0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643425 4 0.0324 0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643426 4 0.0324 0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643427 4 0.0324 0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643428 4 0.0324 0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643429 4 0.0324 0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643430 4 0.0451 0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643431 4 0.0451 0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643432 4 0.0451 0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643433 4 0.0451 0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643434 4 0.0451 0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643435 4 0.0451 0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643436 4 0.0451 0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643437 4 0.0451 0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643438 4 0.0451 0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643439 4 0.0451 0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643440 4 0.0451 0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643441 4 0.0451 0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643442 4 0.0451 0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643443 2 0.1121 0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643444 2 0.1121 0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643445 2 0.1121 0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643446 2 0.1121 0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643447 2 0.1341 0.9683 0.000 0.944 0.000 0.000 0.056
#> SRR1643448 2 0.1341 0.9683 0.000 0.944 0.000 0.000 0.056
#> SRR1643449 2 0.1197 0.9706 0.000 0.952 0.000 0.000 0.048
#> SRR1643450 2 0.1121 0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643451 2 0.1121 0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643452 2 0.1121 0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643453 2 0.1121 0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643454 2 0.1270 0.9696 0.000 0.948 0.000 0.000 0.052
#> SRR1643455 2 0.1197 0.9706 0.000 0.952 0.000 0.000 0.048
#> SRR1643456 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643457 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643458 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643459 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643460 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643461 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643462 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643463 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643464 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643466 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643467 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643468 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643469 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643470 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643471 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643472 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643473 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643474 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643475 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643477 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643478 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643479 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643480 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643481 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643482 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643483 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643484 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643485 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643486 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643487 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643488 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643489 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643490 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643491 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643492 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643493 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643494 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643495 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643496 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643497 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643498 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643499 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643500 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643501 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643502 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643503 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643504 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643505 2 0.0404 0.9743 0.000 0.988 0.000 0.000 0.012
#> SRR1643506 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643507 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643508 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643509 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643510 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643511 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643512 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643513 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643531 2 0.1121 0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643532 2 0.0963 0.9729 0.000 0.964 0.000 0.000 0.036
#> SRR1643533 2 0.0963 0.9729 0.000 0.964 0.000 0.000 0.036
#> SRR1643534 2 0.1121 0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643535 2 0.1121 0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643536 2 0.1270 0.9695 0.000 0.948 0.000 0.000 0.052
#> SRR1643537 2 0.1121 0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643538 2 0.1121 0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643539 2 0.1121 0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643540 2 0.1121 0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643541 2 0.1043 0.9722 0.000 0.960 0.000 0.000 0.040
#> SRR1643542 2 0.1197 0.9706 0.000 0.952 0.000 0.000 0.048
#> SRR1643543 2 0.1121 0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643544 2 0.1270 0.9695 0.000 0.948 0.000 0.000 0.052
#> SRR1643514 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643515 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643516 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643517 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643518 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643519 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643520 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643521 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643522 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643523 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643524 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643525 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643526 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643527 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643528 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643529 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643530 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643545 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643546 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643547 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643548 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643549 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643550 2 0.0510 0.9732 0.000 0.984 0.000 0.000 0.016
#> SRR1643551 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643552 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643553 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643554 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643555 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643556 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643558 2 0.0000 0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643559 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643560 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643561 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643562 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643563 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643564 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643565 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643566 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643567 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643568 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643569 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643570 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643571 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643572 2 0.1671 0.9614 0.000 0.924 0.000 0.000 0.076
cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#> class entropy silhouette p1 p2 p3 p4 p5 p6
#> SRR1643167 1 0.1801 0.71445 0.924 0.000 0.004 0.056 0.000 0.016
#> SRR1643168 1 0.1719 0.71672 0.924 0.000 0.000 0.060 0.000 0.016
#> SRR1643169 1 0.1719 0.71672 0.924 0.000 0.000 0.060 0.000 0.016
#> SRR1643170 1 0.1719 0.71672 0.924 0.000 0.000 0.060 0.000 0.016
#> SRR1643171 1 0.1707 0.71720 0.928 0.000 0.004 0.056 0.000 0.012
#> SRR1643172 1 0.1719 0.71771 0.924 0.000 0.000 0.060 0.000 0.016
#> SRR1643173 1 0.1707 0.71720 0.928 0.000 0.004 0.056 0.000 0.012
#> SRR1643174 1 0.1625 0.71884 0.928 0.000 0.000 0.060 0.000 0.012
#> SRR1643175 1 0.3409 0.65796 0.808 0.000 0.004 0.044 0.000 0.144
#> SRR1643176 1 0.3409 0.65898 0.808 0.000 0.004 0.044 0.000 0.144
#> SRR1643177 1 0.3521 0.64660 0.796 0.000 0.004 0.044 0.000 0.156
#> SRR1643178 1 0.3447 0.65512 0.804 0.000 0.004 0.044 0.000 0.148
#> SRR1643180 1 0.2437 0.70072 0.888 0.000 0.004 0.072 0.000 0.036
#> SRR1643181 1 0.2380 0.70242 0.892 0.000 0.004 0.068 0.000 0.036
#> SRR1643182 1 0.2350 0.70323 0.888 0.000 0.000 0.076 0.000 0.036
#> SRR1643183 1 0.1889 0.70918 0.920 0.000 0.004 0.056 0.000 0.020
#> SRR1643184 1 0.1972 0.70655 0.916 0.000 0.004 0.056 0.000 0.024
#> SRR1643185 1 0.1972 0.70655 0.916 0.000 0.004 0.056 0.000 0.024
#> SRR1643186 1 0.1972 0.70655 0.916 0.000 0.004 0.056 0.000 0.024
#> SRR1643187 1 0.2488 0.69688 0.880 0.000 0.000 0.044 0.000 0.076
#> SRR1643188 1 0.2488 0.69688 0.880 0.000 0.000 0.044 0.000 0.076
#> SRR1643189 1 0.2488 0.69688 0.880 0.000 0.000 0.044 0.000 0.076
#> SRR1643190 1 0.2488 0.69688 0.880 0.000 0.000 0.044 0.000 0.076
#> SRR1643191 1 0.3317 0.69427 0.836 0.000 0.036 0.104 0.000 0.024
#> SRR1643192 1 0.3282 0.70019 0.836 0.000 0.036 0.108 0.000 0.020
#> SRR1643193 1 0.1701 0.72106 0.920 0.000 0.000 0.072 0.000 0.008
#> SRR1643194 1 0.1745 0.72019 0.920 0.000 0.000 0.068 0.000 0.012
#> SRR1643195 1 0.4088 0.58793 0.716 0.000 0.004 0.240 0.000 0.040
#> SRR1643196 1 0.4088 0.58793 0.716 0.000 0.004 0.240 0.000 0.040
#> SRR1643197 1 0.2331 0.73100 0.888 0.000 0.000 0.080 0.000 0.032
#> SRR1643198 1 0.2436 0.72986 0.880 0.000 0.000 0.088 0.000 0.032
#> SRR1643199 1 0.1826 0.71236 0.924 0.000 0.004 0.052 0.000 0.020
#> SRR1643200 1 0.1738 0.71419 0.928 0.000 0.004 0.052 0.000 0.016
#> SRR1643201 1 0.2680 0.69485 0.860 0.000 0.000 0.108 0.000 0.032
#> SRR1643202 1 0.2680 0.69485 0.860 0.000 0.000 0.108 0.000 0.032
#> SRR1643203 1 0.1723 0.71080 0.928 0.000 0.000 0.036 0.000 0.036
#> SRR1643204 1 0.1723 0.71080 0.928 0.000 0.000 0.036 0.000 0.036
#> SRR1643205 3 0.0603 0.98256 0.016 0.000 0.980 0.004 0.000 0.000
#> SRR1643206 3 0.0603 0.98256 0.016 0.000 0.980 0.004 0.000 0.000
#> SRR1643207 3 0.0508 0.98288 0.012 0.000 0.984 0.004 0.000 0.000
#> SRR1643208 3 0.0508 0.98288 0.012 0.000 0.984 0.004 0.000 0.000
#> SRR1643209 3 0.0909 0.98000 0.020 0.000 0.968 0.000 0.000 0.012
#> SRR1643210 3 0.0820 0.98045 0.016 0.000 0.972 0.000 0.000 0.012
#> SRR1643211 3 0.0653 0.98308 0.012 0.000 0.980 0.004 0.000 0.004
#> SRR1643212 3 0.0551 0.98308 0.008 0.000 0.984 0.004 0.000 0.004
#> SRR1643213 3 0.0603 0.98254 0.016 0.000 0.980 0.000 0.000 0.004
#> SRR1643214 3 0.0508 0.98276 0.012 0.000 0.984 0.000 0.000 0.004
#> SRR1643215 3 0.0993 0.97703 0.012 0.000 0.964 0.000 0.000 0.024
#> SRR1643216 3 0.0993 0.97703 0.012 0.000 0.964 0.000 0.000 0.024
#> SRR1643217 3 0.1074 0.97433 0.012 0.000 0.960 0.000 0.000 0.028
#> SRR1643218 3 0.1088 0.97405 0.016 0.000 0.960 0.000 0.000 0.024
#> SRR1643219 3 0.0806 0.98037 0.008 0.000 0.972 0.000 0.000 0.020
#> SRR1643220 3 0.0806 0.98037 0.008 0.000 0.972 0.000 0.000 0.020
#> SRR1643221 3 0.0508 0.98270 0.012 0.000 0.984 0.004 0.000 0.000
#> SRR1643222 3 0.0405 0.98091 0.008 0.000 0.988 0.004 0.000 0.000
#> SRR1643223 3 0.0405 0.98091 0.008 0.000 0.988 0.004 0.000 0.000
#> SRR1643224 3 0.0405 0.98091 0.008 0.000 0.988 0.004 0.000 0.000
#> SRR1643225 3 0.0508 0.98270 0.012 0.000 0.984 0.004 0.000 0.000
#> SRR1643226 3 0.0508 0.98270 0.012 0.000 0.984 0.004 0.000 0.000
#> SRR1643227 3 0.0603 0.98239 0.016 0.000 0.980 0.000 0.000 0.004
#> SRR1643228 3 0.0603 0.98239 0.016 0.000 0.980 0.000 0.000 0.004
#> SRR1643229 3 0.0603 0.98254 0.016 0.000 0.980 0.000 0.000 0.004
#> SRR1643230 3 0.0458 0.98281 0.016 0.000 0.984 0.000 0.000 0.000
#> SRR1643231 3 0.0405 0.98328 0.008 0.000 0.988 0.000 0.000 0.004
#> SRR1643232 3 0.0405 0.98091 0.008 0.000 0.988 0.004 0.000 0.000
#> SRR1643233 3 0.1807 0.94688 0.060 0.000 0.920 0.000 0.000 0.020
#> SRR1643234 3 0.1807 0.94688 0.060 0.000 0.920 0.000 0.000 0.020
#> SRR1643235 3 0.0405 0.98091 0.008 0.000 0.988 0.004 0.000 0.000
#> SRR1643236 3 0.0767 0.98167 0.012 0.000 0.976 0.004 0.000 0.008
#> SRR1643237 3 0.0767 0.98167 0.012 0.000 0.976 0.004 0.000 0.008
#> SRR1643238 3 0.0260 0.98159 0.008 0.000 0.992 0.000 0.000 0.000
#> SRR1643239 3 0.0260 0.98159 0.008 0.000 0.992 0.000 0.000 0.000
#> SRR1643240 3 0.0260 0.98159 0.008 0.000 0.992 0.000 0.000 0.000
#> SRR1643241 3 0.0260 0.98159 0.008 0.000 0.992 0.000 0.000 0.000
#> SRR1643242 3 0.1562 0.96836 0.032 0.000 0.940 0.004 0.000 0.024
#> SRR1643243 3 0.1053 0.97802 0.012 0.000 0.964 0.000 0.004 0.020
#> SRR1643245 3 0.0964 0.97935 0.012 0.000 0.968 0.000 0.004 0.016
#> SRR1643246 3 0.0964 0.97935 0.012 0.000 0.968 0.000 0.004 0.016
#> SRR1643247 3 0.0964 0.97935 0.012 0.000 0.968 0.000 0.004 0.016
#> SRR1643248 3 0.0717 0.98194 0.016 0.000 0.976 0.000 0.000 0.008
#> SRR1643249 3 0.3589 0.82719 0.148 0.000 0.800 0.012 0.000 0.040
#> SRR1643250 4 0.2572 0.80540 0.136 0.000 0.000 0.852 0.000 0.012
#> SRR1643251 4 0.2783 0.78939 0.148 0.000 0.000 0.836 0.000 0.016
#> SRR1643252 4 0.3073 0.76810 0.164 0.000 0.004 0.816 0.000 0.016
#> SRR1643253 4 0.2841 0.77526 0.164 0.000 0.000 0.824 0.000 0.012
#> SRR1643254 4 0.3361 0.73486 0.188 0.000 0.004 0.788 0.000 0.020
#> SRR1643255 4 0.2783 0.78928 0.148 0.000 0.000 0.836 0.000 0.016
#> SRR1643256 4 0.2805 0.77991 0.160 0.000 0.000 0.828 0.000 0.012
#> SRR1643257 4 0.2859 0.78081 0.156 0.000 0.000 0.828 0.000 0.016
#> SRR1643258 4 0.3329 0.73604 0.184 0.000 0.004 0.792 0.000 0.020
#> SRR1643259 4 0.3037 0.77386 0.160 0.000 0.004 0.820 0.000 0.016
#> SRR1643260 4 0.2821 0.78595 0.152 0.000 0.000 0.832 0.000 0.016
#> SRR1643261 4 0.3122 0.76934 0.160 0.000 0.004 0.816 0.000 0.020
#> SRR1643262 4 0.2625 0.82885 0.056 0.000 0.000 0.872 0.000 0.072
#> SRR1643263 4 0.2554 0.82749 0.048 0.000 0.000 0.876 0.000 0.076
#> SRR1643264 4 0.2365 0.83887 0.040 0.000 0.000 0.888 0.000 0.072
#> SRR1643266 4 0.2506 0.83536 0.052 0.000 0.000 0.880 0.000 0.068
#> SRR1643267 4 0.2618 0.82857 0.052 0.000 0.000 0.872 0.000 0.076
#> SRR1643268 4 0.2786 0.81606 0.056 0.000 0.000 0.860 0.000 0.084
#> SRR1643269 4 0.2433 0.83846 0.044 0.000 0.000 0.884 0.000 0.072
#> SRR1643270 4 0.2680 0.82281 0.056 0.000 0.000 0.868 0.000 0.076
#> SRR1643271 4 0.2420 0.83817 0.040 0.000 0.000 0.884 0.000 0.076
#> SRR1643272 4 0.2618 0.82961 0.052 0.000 0.000 0.872 0.000 0.076
#> SRR1643273 6 0.5816 0.63050 0.304 0.000 0.012 0.156 0.000 0.528
#> SRR1643274 6 0.5789 0.61849 0.316 0.000 0.008 0.160 0.000 0.516
#> SRR1643275 6 0.5704 0.57844 0.344 0.000 0.004 0.152 0.000 0.500
#> SRR1643276 6 0.5689 0.61917 0.316 0.000 0.004 0.160 0.000 0.520
#> SRR1643277 6 0.5729 0.61042 0.324 0.000 0.008 0.148 0.000 0.520
#> SRR1643278 6 0.5609 0.56281 0.352 0.000 0.004 0.136 0.000 0.508
#> SRR1643279 6 0.5677 0.58966 0.344 0.000 0.004 0.148 0.000 0.504
#> SRR1643280 6 0.5611 0.60612 0.328 0.000 0.004 0.144 0.000 0.524
#> SRR1643281 6 0.5660 0.59359 0.336 0.000 0.004 0.148 0.000 0.512
#> SRR1643282 6 0.5712 0.60525 0.328 0.000 0.008 0.144 0.000 0.520
#> SRR1643283 6 0.5601 0.58037 0.348 0.000 0.004 0.136 0.000 0.512
#> SRR1643284 6 0.5760 0.60806 0.324 0.000 0.012 0.140 0.000 0.524
#> SRR1643285 6 0.5840 0.62338 0.312 0.000 0.012 0.156 0.000 0.520
#> SRR1643286 6 0.5670 0.58254 0.348 0.000 0.008 0.132 0.000 0.512
#> SRR1643287 6 0.4631 0.46417 0.032 0.000 0.004 0.428 0.000 0.536
#> SRR1643288 6 0.4640 0.45234 0.032 0.000 0.004 0.436 0.000 0.528
#> SRR1643289 6 0.4631 0.46417 0.032 0.000 0.004 0.428 0.000 0.536
#> SRR1643290 6 0.4631 0.46417 0.032 0.000 0.004 0.428 0.000 0.536
#> SRR1643291 6 0.4631 0.46417 0.032 0.000 0.004 0.428 0.000 0.536
#> SRR1643292 6 0.4631 0.46417 0.032 0.000 0.004 0.428 0.000 0.536
#> SRR1643293 6 0.4676 0.48336 0.036 0.000 0.004 0.416 0.000 0.544
#> SRR1643294 6 0.4644 0.44208 0.032 0.000 0.004 0.440 0.000 0.524
#> SRR1643295 6 0.4636 0.45684 0.032 0.000 0.004 0.432 0.000 0.532
#> SRR1643296 6 0.4631 0.46417 0.032 0.000 0.004 0.428 0.000 0.536
#> SRR1643297 6 0.4636 0.45995 0.032 0.000 0.004 0.432 0.000 0.532
#> SRR1643298 6 0.4687 0.47271 0.036 0.000 0.004 0.424 0.000 0.536
#> SRR1643299 6 0.4636 0.45478 0.032 0.000 0.004 0.432 0.000 0.532
#> SRR1643300 6 0.4631 0.46417 0.032 0.000 0.004 0.428 0.000 0.536
#> SRR1643301 4 0.5521 -0.10206 0.400 0.000 0.000 0.468 0.000 0.132
#> SRR1643302 1 0.5292 0.20100 0.468 0.000 0.000 0.432 0.000 0.100
#> SRR1643303 4 0.5220 0.10983 0.372 0.000 0.000 0.528 0.000 0.100
#> SRR1643304 1 0.5329 0.16314 0.452 0.000 0.000 0.444 0.000 0.104
#> SRR1643305 1 0.4971 0.26614 0.508 0.000 0.000 0.424 0.000 0.068
#> SRR1643306 1 0.5112 0.30473 0.536 0.000 0.000 0.376 0.000 0.088
#> SRR1643307 4 0.5030 0.28620 0.316 0.000 0.000 0.588 0.000 0.096
#> SRR1643308 1 0.5025 0.23377 0.492 0.000 0.000 0.436 0.000 0.072
#> SRR1643309 4 0.5196 -0.00194 0.404 0.000 0.000 0.504 0.000 0.092
#> SRR1643310 4 0.4808 -0.16892 0.472 0.000 0.000 0.476 0.000 0.052
#> SRR1643311 4 0.5098 0.21862 0.352 0.000 0.000 0.556 0.000 0.092
#> SRR1643312 1 0.5257 0.20085 0.472 0.000 0.000 0.432 0.000 0.096
#> SRR1643313 4 0.5093 0.09572 0.388 0.000 0.000 0.528 0.000 0.084
#> SRR1643314 1 0.4252 0.65443 0.728 0.000 0.000 0.176 0.000 0.096
#> SRR1643315 1 0.4689 0.62469 0.700 0.000 0.008 0.184 0.000 0.108
#> SRR1643316 1 0.4111 0.66268 0.740 0.000 0.000 0.176 0.000 0.084
#> SRR1643317 1 0.4875 0.58513 0.668 0.000 0.008 0.224 0.000 0.100
#> SRR1643318 1 0.4351 0.65145 0.720 0.000 0.000 0.172 0.000 0.108
#> SRR1643319 1 0.4148 0.67686 0.744 0.000 0.000 0.148 0.000 0.108
#> SRR1643320 1 0.4340 0.65925 0.720 0.000 0.000 0.176 0.000 0.104
#> SRR1643321 1 0.4506 0.63459 0.704 0.000 0.000 0.176 0.000 0.120
#> SRR1643322 1 0.4074 0.67346 0.748 0.000 0.000 0.160 0.000 0.092
#> SRR1643323 1 0.4199 0.66337 0.736 0.000 0.000 0.164 0.000 0.100
#> SRR1643324 1 0.4206 0.65489 0.732 0.000 0.000 0.176 0.000 0.092
#> SRR1643325 1 0.4267 0.65962 0.732 0.000 0.000 0.152 0.000 0.116
#> SRR1643326 1 0.4687 0.61094 0.684 0.000 0.000 0.180 0.000 0.136
#> SRR1643327 1 0.4120 0.67586 0.744 0.000 0.000 0.160 0.000 0.096
#> SRR1643328 1 0.3856 0.70085 0.788 0.000 0.012 0.068 0.000 0.132
#> SRR1643329 1 0.3488 0.71573 0.820 0.000 0.012 0.060 0.000 0.108
#> SRR1643330 1 0.3725 0.69913 0.796 0.000 0.012 0.056 0.000 0.136
#> SRR1643331 1 0.3330 0.71738 0.828 0.000 0.008 0.056 0.000 0.108
#> SRR1643332 1 0.3971 0.68099 0.772 0.000 0.012 0.060 0.000 0.156
#> SRR1643333 1 0.3314 0.71583 0.828 0.000 0.008 0.052 0.000 0.112
#> SRR1643334 1 0.3176 0.71918 0.840 0.000 0.008 0.052 0.000 0.100
#> SRR1643335 1 0.3561 0.70942 0.812 0.000 0.012 0.056 0.000 0.120
#> SRR1643336 1 0.3725 0.69917 0.796 0.000 0.012 0.056 0.000 0.136
#> SRR1643337 1 0.3703 0.70179 0.796 0.000 0.008 0.064 0.000 0.132
#> SRR1643338 1 0.3395 0.71180 0.824 0.000 0.012 0.048 0.000 0.116
#> SRR1643339 1 0.3685 0.70191 0.800 0.000 0.012 0.056 0.000 0.132
#> SRR1643340 1 0.3160 0.71835 0.840 0.000 0.008 0.048 0.000 0.104
#> SRR1643341 1 0.3822 0.69902 0.788 0.000 0.012 0.060 0.000 0.140
#> SRR1643342 1 0.3561 0.70932 0.812 0.000 0.012 0.056 0.000 0.120
#> SRR1643343 6 0.5581 0.69492 0.188 0.000 0.012 0.204 0.000 0.596
#> SRR1643344 6 0.5558 0.69585 0.192 0.000 0.012 0.196 0.000 0.600
#> SRR1643345 6 0.5583 0.69583 0.192 0.000 0.012 0.200 0.000 0.596
#> SRR1643346 6 0.5555 0.69334 0.204 0.000 0.012 0.184 0.000 0.600
#> SRR1643347 6 0.5607 0.69518 0.192 0.000 0.012 0.204 0.000 0.592
#> SRR1643348 6 0.5549 0.69050 0.176 0.000 0.012 0.212 0.000 0.600
#> SRR1643349 6 0.5605 0.69136 0.208 0.000 0.012 0.188 0.000 0.592
#> SRR1643350 6 0.5630 0.69339 0.192 0.000 0.012 0.208 0.000 0.588
#> SRR1643351 6 0.5607 0.69437 0.196 0.000 0.012 0.200 0.000 0.592
#> SRR1643352 6 0.5583 0.69587 0.196 0.000 0.012 0.196 0.000 0.596
#> SRR1643353 6 0.5607 0.69387 0.200 0.000 0.012 0.196 0.000 0.592
#> SRR1643354 6 0.5602 0.69315 0.184 0.000 0.012 0.212 0.000 0.592
#> SRR1643355 6 0.5605 0.69136 0.208 0.000 0.012 0.188 0.000 0.592
#> SRR1643356 6 0.5532 0.69644 0.188 0.000 0.012 0.196 0.000 0.604
#> SRR1643357 6 0.5531 0.69431 0.184 0.000 0.012 0.200 0.000 0.604
#> SRR1643358 4 0.1531 0.86113 0.068 0.000 0.000 0.928 0.000 0.004
#> SRR1643359 4 0.1411 0.86573 0.060 0.000 0.004 0.936 0.000 0.000
#> SRR1643360 4 0.1429 0.86679 0.052 0.000 0.004 0.940 0.000 0.004
#> SRR1643361 4 0.1531 0.86118 0.068 0.000 0.000 0.928 0.000 0.004
#> SRR1643362 4 0.1285 0.86664 0.052 0.000 0.004 0.944 0.000 0.000
#> SRR1643363 4 0.1327 0.86466 0.064 0.000 0.000 0.936 0.000 0.000
#> SRR1643364 4 0.1524 0.86350 0.060 0.000 0.000 0.932 0.000 0.008
#> SRR1643365 4 0.1701 0.85947 0.072 0.000 0.000 0.920 0.000 0.008
#> SRR1643366 4 0.1411 0.86428 0.060 0.000 0.000 0.936 0.000 0.004
#> SRR1643367 4 0.1267 0.86508 0.060 0.000 0.000 0.940 0.000 0.000
#> SRR1643368 4 0.1644 0.85741 0.076 0.000 0.000 0.920 0.000 0.004
#> SRR1643369 4 0.1411 0.86509 0.060 0.000 0.000 0.936 0.000 0.004
#> SRR1643370 4 0.1643 0.85990 0.068 0.000 0.000 0.924 0.000 0.008
#> SRR1643371 4 0.1349 0.86567 0.056 0.000 0.000 0.940 0.000 0.004
#> SRR1643372 4 0.1643 0.86196 0.068 0.000 0.000 0.924 0.000 0.008
#> SRR1643373 4 0.1500 0.85657 0.012 0.000 0.000 0.936 0.000 0.052
#> SRR1643374 4 0.1434 0.85962 0.012 0.000 0.000 0.940 0.000 0.048
#> SRR1643375 4 0.1511 0.86098 0.012 0.000 0.004 0.940 0.000 0.044
#> SRR1643376 4 0.1578 0.85968 0.012 0.000 0.004 0.936 0.000 0.048
#> SRR1643377 4 0.1890 0.84813 0.024 0.000 0.000 0.916 0.000 0.060
#> SRR1643378 4 0.1625 0.85458 0.012 0.000 0.000 0.928 0.000 0.060
#> SRR1643379 4 0.1682 0.85380 0.020 0.000 0.000 0.928 0.000 0.052
#> SRR1643380 4 0.1434 0.85813 0.012 0.000 0.000 0.940 0.000 0.048
#> SRR1643381 4 0.1789 0.86179 0.032 0.000 0.000 0.924 0.000 0.044
#> SRR1643382 4 0.1700 0.85845 0.024 0.000 0.000 0.928 0.000 0.048
#> SRR1643383 4 0.1528 0.85816 0.016 0.000 0.000 0.936 0.000 0.048
#> SRR1643384 4 0.1370 0.86152 0.012 0.000 0.004 0.948 0.000 0.036
#> SRR1643385 4 0.1528 0.85991 0.016 0.000 0.000 0.936 0.000 0.048
#> SRR1643386 4 0.1500 0.85836 0.012 0.000 0.000 0.936 0.000 0.052
#> SRR1643387 4 0.1719 0.85387 0.016 0.000 0.000 0.924 0.000 0.060
#> SRR1643388 4 0.1624 0.86301 0.020 0.000 0.004 0.936 0.000 0.040
#> SRR1643389 4 0.1578 0.85968 0.012 0.000 0.004 0.936 0.000 0.048
#> SRR1643390 1 0.4997 0.45325 0.632 0.000 0.012 0.076 0.000 0.280
#> SRR1643391 1 0.4874 0.45565 0.636 0.000 0.008 0.072 0.000 0.284
#> SRR1643392 1 0.5113 0.39091 0.604 0.000 0.012 0.076 0.000 0.308
#> SRR1643393 1 0.4838 0.47845 0.644 0.000 0.008 0.072 0.000 0.276
#> SRR1643394 1 0.5019 0.42660 0.620 0.000 0.012 0.072 0.000 0.296
#> SRR1643395 1 0.5157 0.40308 0.608 0.000 0.012 0.084 0.000 0.296
#> SRR1643396 1 0.4708 0.51653 0.664 0.000 0.008 0.068 0.000 0.260
#> SRR1643397 1 0.4856 0.46573 0.640 0.000 0.008 0.072 0.000 0.280
#> SRR1643398 1 0.4957 0.42752 0.624 0.000 0.008 0.076 0.000 0.292
#> SRR1643399 1 0.5067 0.37930 0.604 0.000 0.008 0.080 0.000 0.308
#> SRR1643400 1 0.4591 0.53988 0.680 0.000 0.008 0.064 0.000 0.248
#> SRR1643401 1 0.4970 0.43863 0.624 0.000 0.012 0.068 0.000 0.296
#> SRR1643402 1 0.4737 0.51256 0.664 0.000 0.008 0.072 0.000 0.256
#> SRR1643403 1 0.5216 0.38417 0.600 0.000 0.012 0.088 0.000 0.300
#> SRR1643404 1 0.4892 0.45749 0.632 0.000 0.008 0.072 0.000 0.288
#> SRR1643405 6 0.5461 0.52494 0.360 0.000 0.036 0.056 0.000 0.548
#> SRR1643406 6 0.5561 0.52190 0.356 0.000 0.040 0.060 0.000 0.544
#> SRR1643407 6 0.5501 0.52857 0.352 0.000 0.040 0.056 0.000 0.552
#> SRR1643408 6 0.5461 0.52494 0.360 0.000 0.036 0.056 0.000 0.548
#> SRR1643409 6 0.5419 0.49777 0.376 0.000 0.028 0.060 0.000 0.536
#> SRR1643410 6 0.5408 0.52010 0.364 0.000 0.032 0.056 0.000 0.548
#> SRR1643411 6 0.5511 0.52404 0.356 0.000 0.040 0.056 0.000 0.548
#> SRR1643412 6 0.5461 0.52006 0.360 0.000 0.036 0.056 0.000 0.548
#> SRR1643413 6 0.5511 0.52404 0.356 0.000 0.040 0.056 0.000 0.548
#> SRR1643414 6 0.5530 0.50915 0.364 0.000 0.040 0.056 0.000 0.540
#> SRR1643415 6 0.5559 0.52580 0.352 0.000 0.044 0.056 0.000 0.548
#> SRR1643416 6 0.5511 0.52404 0.356 0.000 0.040 0.056 0.000 0.548
#> SRR1643417 6 0.5511 0.52404 0.356 0.000 0.040 0.056 0.000 0.548
#> SRR1643418 4 0.0767 0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643419 4 0.0767 0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643420 4 0.0767 0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643421 4 0.0767 0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643422 4 0.0951 0.86257 0.004 0.000 0.008 0.968 0.000 0.020
#> SRR1643423 4 0.0881 0.86256 0.008 0.000 0.008 0.972 0.000 0.012
#> SRR1643424 4 0.0767 0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643425 4 0.0767 0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643426 4 0.0767 0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643427 4 0.0767 0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643428 4 0.0767 0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643429 4 0.0862 0.86198 0.004 0.000 0.008 0.972 0.000 0.016
#> SRR1643430 4 0.0508 0.86289 0.000 0.000 0.004 0.984 0.000 0.012
#> SRR1643431 4 0.0767 0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643432 4 0.0653 0.86384 0.004 0.000 0.004 0.980 0.000 0.012
#> SRR1643433 4 0.0508 0.86289 0.000 0.000 0.004 0.984 0.000 0.012
#> SRR1643434 4 0.0653 0.86384 0.004 0.000 0.004 0.980 0.000 0.012
#> SRR1643435 4 0.0653 0.86384 0.004 0.000 0.004 0.980 0.000 0.012
#> SRR1643436 4 0.0653 0.86384 0.004 0.000 0.004 0.980 0.000 0.012
#> SRR1643437 4 0.0653 0.86384 0.004 0.000 0.004 0.980 0.000 0.012
#> SRR1643438 4 0.0767 0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643439 4 0.0767 0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643440 4 0.0508 0.86289 0.000 0.000 0.004 0.984 0.000 0.012
#> SRR1643441 4 0.0653 0.86384 0.004 0.000 0.004 0.980 0.000 0.012
#> SRR1643442 4 0.0653 0.86384 0.004 0.000 0.004 0.980 0.000 0.012
#> SRR1643443 2 0.1501 0.95486 0.000 0.924 0.000 0.000 0.076 0.000
#> SRR1643444 2 0.1327 0.95807 0.000 0.936 0.000 0.000 0.064 0.000
#> SRR1643445 2 0.1387 0.95723 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643446 2 0.1327 0.95807 0.000 0.936 0.000 0.000 0.064 0.000
#> SRR1643447 2 0.1556 0.95370 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643448 2 0.1556 0.95370 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643449 2 0.1501 0.95486 0.000 0.924 0.000 0.000 0.076 0.000
#> SRR1643450 2 0.1387 0.95717 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643451 2 0.1387 0.95723 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643452 2 0.1501 0.95486 0.000 0.924 0.000 0.000 0.076 0.000
#> SRR1643453 2 0.1387 0.95723 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643454 2 0.1501 0.95486 0.000 0.924 0.000 0.000 0.076 0.000
#> SRR1643455 2 0.1444 0.95592 0.000 0.928 0.000 0.000 0.072 0.000
#> SRR1643456 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643457 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643458 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643459 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643460 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643461 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643462 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643463 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643464 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643466 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643467 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643468 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643469 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643470 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643471 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643472 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643473 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643474 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643475 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643477 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643478 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643479 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643480 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643481 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643482 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643483 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643484 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643485 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643486 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643487 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643488 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643489 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643490 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643491 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643492 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643493 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643494 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643495 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643496 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643497 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643498 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643499 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643500 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643501 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643502 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643503 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643504 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643505 2 0.0146 0.96540 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643506 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643507 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643508 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643509 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643510 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643511 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643512 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643513 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643531 2 0.1387 0.95710 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643532 2 0.1267 0.95854 0.000 0.940 0.000 0.000 0.060 0.000
#> SRR1643533 2 0.1267 0.95854 0.000 0.940 0.000 0.000 0.060 0.000
#> SRR1643534 2 0.1387 0.95710 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643535 2 0.1387 0.95710 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643536 2 0.1501 0.95486 0.000 0.924 0.000 0.000 0.076 0.000
#> SRR1643537 2 0.1327 0.95793 0.000 0.936 0.000 0.000 0.064 0.000
#> SRR1643538 2 0.1327 0.95793 0.000 0.936 0.000 0.000 0.064 0.000
#> SRR1643539 2 0.1387 0.95710 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643540 2 0.1327 0.95793 0.000 0.936 0.000 0.000 0.064 0.000
#> SRR1643541 2 0.1387 0.95710 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643542 2 0.1444 0.95592 0.000 0.928 0.000 0.000 0.072 0.000
#> SRR1643543 2 0.1327 0.95793 0.000 0.936 0.000 0.000 0.064 0.000
#> SRR1643544 2 0.1556 0.95370 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643514 2 0.2092 0.93350 0.000 0.876 0.000 0.000 0.124 0.000
#> SRR1643515 2 0.1957 0.93955 0.000 0.888 0.000 0.000 0.112 0.000
#> SRR1643516 2 0.2092 0.93350 0.000 0.876 0.000 0.000 0.124 0.000
#> SRR1643517 2 0.2048 0.93642 0.000 0.880 0.000 0.000 0.120 0.000
#> SRR1643518 2 0.2048 0.93579 0.000 0.880 0.000 0.000 0.120 0.000
#> SRR1643519 2 0.2092 0.93350 0.000 0.876 0.000 0.000 0.124 0.000
#> SRR1643520 2 0.2003 0.93796 0.000 0.884 0.000 0.000 0.116 0.000
#> SRR1643521 2 0.2092 0.93350 0.000 0.876 0.000 0.000 0.124 0.000
#> SRR1643522 2 0.2092 0.93350 0.000 0.876 0.000 0.000 0.124 0.000
#> SRR1643523 2 0.2092 0.93350 0.000 0.876 0.000 0.000 0.124 0.000
#> SRR1643524 2 0.2135 0.93112 0.000 0.872 0.000 0.000 0.128 0.000
#> SRR1643525 2 0.2003 0.93796 0.000 0.884 0.000 0.000 0.116 0.000
#> SRR1643526 2 0.2092 0.93350 0.000 0.876 0.000 0.000 0.124 0.000
#> SRR1643527 2 0.2092 0.93350 0.000 0.876 0.000 0.000 0.124 0.000
#> SRR1643528 2 0.2003 0.93796 0.000 0.884 0.000 0.000 0.116 0.000
#> SRR1643529 2 0.2178 0.92861 0.000 0.868 0.000 0.000 0.132 0.000
#> SRR1643530 2 0.2003 0.93796 0.000 0.884 0.000 0.000 0.116 0.000
#> SRR1643545 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643546 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643547 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643548 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643549 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643550 2 0.0260 0.96455 0.000 0.992 0.000 0.000 0.008 0.000
#> SRR1643551 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643552 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643553 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643554 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643555 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643556 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643558 2 0.0000 0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643559 2 0.1814 0.94588 0.000 0.900 0.000 0.000 0.100 0.000
#> SRR1643560 2 0.1863 0.94467 0.000 0.896 0.000 0.000 0.104 0.000
#> SRR1643561 2 0.1863 0.94467 0.000 0.896 0.000 0.000 0.104 0.000
#> SRR1643562 2 0.1863 0.94467 0.000 0.896 0.000 0.000 0.104 0.000
#> SRR1643563 2 0.1765 0.94694 0.000 0.904 0.000 0.000 0.096 0.000
#> SRR1643564 2 0.1863 0.94428 0.000 0.896 0.000 0.000 0.104 0.000
#> SRR1643565 2 0.1765 0.94694 0.000 0.904 0.000 0.000 0.096 0.000
#> SRR1643566 2 0.1863 0.94467 0.000 0.896 0.000 0.000 0.104 0.000
#> SRR1643567 2 0.1814 0.94588 0.000 0.900 0.000 0.000 0.100 0.000
#> SRR1643568 2 0.1863 0.94467 0.000 0.896 0.000 0.000 0.104 0.000
#> SRR1643569 2 0.1863 0.94467 0.000 0.896 0.000 0.000 0.104 0.000
#> SRR1643570 2 0.1863 0.94467 0.000 0.896 0.000 0.000 0.104 0.000
#> SRR1643571 2 0.1863 0.94467 0.000 0.896 0.000 0.000 0.104 0.000
#> SRR1643572 2 0.1863 0.94467 0.000 0.896 0.000 0.000 0.104 0.000
Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.
consensus_heatmap(res, k = 2)
consensus_heatmap(res, k = 3)
consensus_heatmap(res, k = 4)
consensus_heatmap(res, k = 5)
consensus_heatmap(res, k = 6)
Heatmaps for the membership of samples in all partitions to see how consistent they are:
membership_heatmap(res, k = 2)
membership_heatmap(res, k = 3)
membership_heatmap(res, k = 4)
membership_heatmap(res, k = 5)
membership_heatmap(res, k = 6)
As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.
Signature heatmaps where rows are scaled:
get_signatures(res, k = 2)
get_signatures(res, k = 3)
get_signatures(res, k = 4)
get_signatures(res, k = 5)
get_signatures(res, k = 6)
Signature heatmaps where rows are not scaled:
get_signatures(res, k = 2, scale_rows = FALSE)
get_signatures(res, k = 3, scale_rows = FALSE)
get_signatures(res, k = 4, scale_rows = FALSE)
get_signatures(res, k = 5, scale_rows = FALSE)
get_signatures(res, k = 6, scale_rows = FALSE)
Compare the overlap of signatures from different k:
compare_signatures(res)
get_signature() returns a data frame invisibly. TO get the list of signatures, the function
call should be assigned to a variable explicitly. In following code, if plot argument is set
to FALSE, no heatmap is plotted while only the differential analysis is performed.
# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)
An example of the output of tb is:
#> which_row fdr mean_1 mean_2 scaled_mean_1 scaled_mean_2 km
#> 1 38 0.042760348 8.373488 9.131774 -0.5533452 0.5164555 1
#> 2 40 0.018707592 7.106213 8.469186 -0.6173731 0.5762149 1
#> 3 55 0.019134737 10.221463 11.207825 -0.6159697 0.5749050 1
#> 4 59 0.006059896 5.921854 7.869574 -0.6899429 0.6439467 1
#> 5 60 0.018055526 8.928898 10.211722 -0.6204761 0.5791110 1
#> 6 98 0.009384629 15.714769 14.887706 0.6635654 -0.6193277 2
...
The columns in tb are:
which_row: row indices corresponding to the input matrix.fdr: FDR for the differential test. mean_x: The mean value in group x.scaled_mean_x: The mean value in group x after rows are scaled.km: Row groups if k-means clustering is applied to rows.UMAP plot which shows how samples are separated.
dimension_reduction(res, k = 2, method = "UMAP")
dimension_reduction(res, k = 3, method = "UMAP")
dimension_reduction(res, k = 4, method = "UMAP")
dimension_reduction(res, k = 5, method = "UMAP")
dimension_reduction(res, k = 6, method = "UMAP")
Following heatmap shows how subgroups are split when increasing k:
collect_classes(res)
If matrix rows can be associated to genes, consider to use functional_enrichment(res,
...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.
sessionInfo()
#> R version 3.6.0 (2019-04-26)
#> Platform: x86_64-pc-linux-gnu (64-bit)
#> Running under: CentOS Linux 7 (Core)
#>
#> Matrix products: default
#> BLAS: /usr/lib64/libblas.so.3.4.2
#> LAPACK: /usr/lib64/liblapack.so.3.4.2
#>
#> locale:
#> [1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C LC_TIME=en_GB.UTF-8
#> [4] LC_COLLATE=en_GB.UTF-8 LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8
#> [7] LC_PAPER=en_GB.UTF-8 LC_NAME=C LC_ADDRESS=C
#> [10] LC_TELEPHONE=C LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
#>
#> attached base packages:
#> [1] grid stats graphics grDevices utils datasets methods base
#>
#> other attached packages:
#> [1] genefilter_1.66.0 ComplexHeatmap_2.3.1 markdown_1.1 knitr_1.26
#> [5] GetoptLong_0.1.7 cola_1.3.2
#>
#> loaded via a namespace (and not attached):
#> [1] circlize_0.4.8 shape_1.4.4 xfun_0.11 slam_0.1-46
#> [5] lattice_0.20-38 splines_3.6.0 colorspace_1.4-1 vctrs_0.2.0
#> [9] stats4_3.6.0 blob_1.2.0 XML_3.98-1.20 survival_2.44-1.1
#> [13] rlang_0.4.2 pillar_1.4.2 DBI_1.0.0 BiocGenerics_0.30.0
#> [17] bit64_0.9-7 RColorBrewer_1.1-2 matrixStats_0.55.0 stringr_1.4.0
#> [21] GlobalOptions_0.1.1 evaluate_0.14 memoise_1.1.0 Biobase_2.44.0
#> [25] IRanges_2.18.3 parallel_3.6.0 AnnotationDbi_1.46.1 highr_0.8
#> [29] Rcpp_1.0.3 xtable_1.8-4 backports_1.1.5 S4Vectors_0.22.1
#> [33] annotate_1.62.0 skmeans_0.2-11 bit_1.1-14 microbenchmark_1.4-7
#> [37] brew_1.0-6 impute_1.58.0 rjson_0.2.20 png_0.1-7
#> [41] digest_0.6.23 stringi_1.4.3 polyclip_1.10-0 clue_0.3-57
#> [45] tools_3.6.0 bitops_1.0-6 magrittr_1.5 eulerr_6.0.0
#> [49] RCurl_1.95-4.12 RSQLite_2.1.4 tibble_2.1.3 cluster_2.1.0
#> [53] crayon_1.3.4 pkgconfig_2.0.3 zeallot_0.1.0 Matrix_1.2-17
#> [57] xml2_1.2.2 httr_1.4.1 R6_2.4.1 mclust_5.4.5
#> [61] compiler_3.6.0