cola Report for recount2:SRP049593

Date: 2019-12-26 00:27:21 CET, cola version: 1.3.2

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Summary

All available functions which can be applied to this res_list object:

res_list
#> A 'ConsensusPartitionList' object with 24 methods.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows are extracted by 'SD, CV, MAD, ATC' methods.
#>   Subgroups are detected by 'hclust, kmeans, skmeans, pam, mclust, NMF' method.
#>   Number of partitions are tried for k = 2, 3, 4, 5, 6.
#>   Performed in total 30000 partitions by row resampling.
#> 
#> Following methods can be applied to this 'ConsensusPartitionList' object:
#>  [1] "cola_report"           "collect_classes"       "collect_plots"         "collect_stats"        
#>  [5] "colnames"              "functional_enrichment" "get_anno_col"          "get_anno"             
#>  [9] "get_classes"           "get_matrix"            "get_membership"        "get_stats"            
#> [13] "is_best_k"             "is_stable_k"           "ncol"                  "nrow"                 
#> [17] "rownames"              "show"                  "suggest_best_k"        "test_to_known_factors"
#> [21] "top_rows_heatmap"      "top_rows_overlap"     
#> 
#> You can get result for a single method by, e.g. object["SD", "hclust"] or object["SD:hclust"]
#> or a subset of methods by object[c("SD", "CV")], c("hclust", "kmeans")]

The call of run_all_consensus_partition_methods() was:

#> run_all_consensus_partition_methods(data = mat, mc.cores = 4)

Dimension of the input matrix:

mat = get_matrix(res_list)
dim(mat)
#> [1] 15395   400

Density distribution

The density distribution for each sample is visualized as in one column in the following heatmap. The clustering is based on the distance which is the Kolmogorov-Smirnov statistic between two distributions.

library(ComplexHeatmap)
densityHeatmap(mat, ylab = "value", cluster_columns = TRUE, show_column_names = FALSE,
    mc.cores = 4)

plot of chunk density-heatmap

Suggest the best k

Folowing table shows the best k (number of partitions) for each combination of top-value methods and partition methods. Clicking on the method name in the table goes to the section for a single combination of methods.

The cola vignette explains the definition of the metrics used for determining the best number of partitions.

suggest_best_k(res_list)
The best k 1-PAC Mean silhouette Concordance Optional k
SD:hclust 3 1.000 1.000 1.000 ** 2
SD:NMF 3 1.000 0.999 0.999 ** 2
CV:hclust 3 1.000 0.998 0.998 ** 2
CV:kmeans 2 1.000 1.000 1.000 **
CV:pam 3 1.000 0.987 0.987 ** 2
MAD:hclust 3 1.000 1.000 1.000 ** 2
ATC:hclust 2 1.000 1.000 1.000 **
ATC:kmeans 2 1.000 1.000 1.000 **
ATC:skmeans 2 1.000 1.000 1.000 **
ATC:NMF 2 1.000 1.000 1.000 **
SD:mclust 6 0.968 0.902 0.946 ** 2,3,4,5
CV:mclust 6 0.958 0.921 0.951 ** 2,5
MAD:skmeans 4 0.951 0.926 0.958 ** 2
SD:skmeans 4 0.943 0.947 0.963 * 2,3
ATC:pam 6 0.941 0.952 0.967 * 2,4,5
MAD:pam 5 0.933 0.933 0.946 * 2,3,4
MAD:mclust 6 0.931 0.886 0.930 * 2,4,5
CV:skmeans 4 0.931 0.926 0.949 * 2
CV:NMF 3 0.918 0.899 0.937 * 2
ATC:mclust 3 0.911 0.882 0.933 *
MAD:NMF 4 0.909 0.940 0.960 * 2
SD:pam 6 0.907 0.912 0.918 * 2,3,4,5
SD:kmeans 2 0.509 0.971 0.942
MAD:kmeans 2 0.509 0.977 0.952

**: 1-PAC > 0.95, *: 1-PAC > 0.9

CDF of consensus matrices

Cumulative distribution function curves of consensus matrix for all methods.

collect_plots(res_list, fun = plot_ecdf)

plot of chunk collect-plots

Consensus heatmap

Consensus heatmaps for all methods. (What is a consensus heatmap?)

collect_plots(res_list, k = 2, fun = consensus_heatmap, mc.cores = 4)

plot of chunk tab-collect-consensus-heatmap-1

collect_plots(res_list, k = 3, fun = consensus_heatmap, mc.cores = 4)

plot of chunk tab-collect-consensus-heatmap-2

collect_plots(res_list, k = 4, fun = consensus_heatmap, mc.cores = 4)

plot of chunk tab-collect-consensus-heatmap-3

collect_plots(res_list, k = 5, fun = consensus_heatmap, mc.cores = 4)

plot of chunk tab-collect-consensus-heatmap-4

collect_plots(res_list, k = 6, fun = consensus_heatmap, mc.cores = 4)

plot of chunk tab-collect-consensus-heatmap-5

Membership heatmap

Membership heatmaps for all methods. (What is a membership heatmap?)

collect_plots(res_list, k = 2, fun = membership_heatmap, mc.cores = 4)

plot of chunk tab-collect-membership-heatmap-1

collect_plots(res_list, k = 3, fun = membership_heatmap, mc.cores = 4)

plot of chunk tab-collect-membership-heatmap-2

collect_plots(res_list, k = 4, fun = membership_heatmap, mc.cores = 4)

plot of chunk tab-collect-membership-heatmap-3

collect_plots(res_list, k = 5, fun = membership_heatmap, mc.cores = 4)

plot of chunk tab-collect-membership-heatmap-4

collect_plots(res_list, k = 6, fun = membership_heatmap, mc.cores = 4)

plot of chunk tab-collect-membership-heatmap-5

Signature heatmap

Signature heatmaps for all methods. (What is a signature heatmap?)

Note in following heatmaps, rows are scaled.

collect_plots(res_list, k = 2, fun = get_signatures, mc.cores = 4)

plot of chunk tab-collect-get-signatures-1

collect_plots(res_list, k = 3, fun = get_signatures, mc.cores = 4)

plot of chunk tab-collect-get-signatures-2

collect_plots(res_list, k = 4, fun = get_signatures, mc.cores = 4)

plot of chunk tab-collect-get-signatures-3

collect_plots(res_list, k = 5, fun = get_signatures, mc.cores = 4)

plot of chunk tab-collect-get-signatures-4

collect_plots(res_list, k = 6, fun = get_signatures, mc.cores = 4)

plot of chunk tab-collect-get-signatures-5

Statistics table

The statistics used for measuring the stability of consensus partitioning. (How are they defined?)

get_stats(res_list, k = 2)
#>             k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> SD:NMF      2 1.000           1.000       1.000          0.435 0.566   0.566
#> CV:NMF      2 1.000           1.000       1.000          0.435 0.566   0.566
#> MAD:NMF     2 1.000           1.000       1.000          0.435 0.566   0.566
#> ATC:NMF     2 1.000           1.000       1.000          0.435 0.566   0.566
#> SD:skmeans  2 1.000           1.000       1.000          0.435 0.566   0.566
#> CV:skmeans  2 1.000           1.000       1.000          0.435 0.566   0.566
#> MAD:skmeans 2 1.000           1.000       1.000          0.435 0.566   0.566
#> ATC:skmeans 2 1.000           1.000       1.000          0.435 0.566   0.566
#> SD:mclust   2 1.000           1.000       1.000          0.435 0.566   0.566
#> CV:mclust   2 1.000           0.998       0.999          0.436 0.566   0.566
#> MAD:mclust  2 1.000           1.000       1.000          0.435 0.566   0.566
#> ATC:mclust  2 0.804           0.890       0.949          0.465 0.509   0.509
#> SD:kmeans   2 0.509           0.971       0.942          0.403 0.566   0.566
#> CV:kmeans   2 1.000           1.000       1.000          0.435 0.566   0.566
#> MAD:kmeans  2 0.509           0.977       0.952          0.409 0.566   0.566
#> ATC:kmeans  2 1.000           1.000       1.000          0.435 0.566   0.566
#> SD:pam      2 1.000           1.000       1.000          0.435 0.566   0.566
#> CV:pam      2 1.000           1.000       1.000          0.435 0.566   0.566
#> MAD:pam     2 1.000           1.000       1.000          0.435 0.566   0.566
#> ATC:pam     2 1.000           1.000       1.000          0.435 0.566   0.566
#> SD:hclust   2 1.000           1.000       1.000          0.435 0.566   0.566
#> CV:hclust   2 1.000           1.000       1.000          0.435 0.566   0.566
#> MAD:hclust  2 1.000           1.000       1.000          0.435 0.566   0.566
#> ATC:hclust  2 1.000           1.000       1.000          0.435 0.566   0.566
get_stats(res_list, k = 3)
#>             k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> SD:NMF      3 1.000           0.999       0.999          0.291 0.874   0.777
#> CV:NMF      3 0.918           0.899       0.937          0.505 0.775   0.602
#> MAD:NMF     3 0.886           0.910       0.958          0.418 0.805   0.655
#> ATC:NMF     3 0.761           0.830       0.913          0.309 0.865   0.761
#> SD:skmeans  3 1.000           0.983       0.988          0.306 0.874   0.777
#> CV:skmeans  3 0.779           0.946       0.941          0.484 0.768   0.591
#> MAD:skmeans 3 0.821           0.952       0.963          0.329 0.874   0.777
#> ATC:skmeans 3 0.797           0.949       0.949          0.325 0.874   0.777
#> SD:mclust   3 1.000           0.996       0.998          0.294 0.874   0.777
#> CV:mclust   3 0.884           0.931       0.967          0.340 0.874   0.777
#> MAD:mclust  3 0.684           0.887       0.908          0.362 0.874   0.777
#> ATC:mclust  3 0.911           0.882       0.933          0.288 0.847   0.708
#> SD:kmeans   3 0.824           0.961       0.926          0.327 0.874   0.777
#> CV:kmeans   3 0.634           0.695       0.832          0.339 0.874   0.777
#> MAD:kmeans  3 0.773           0.924       0.897          0.317 0.874   0.777
#> ATC:kmeans  3 0.673           0.868       0.838          0.259 0.876   0.781
#> SD:pam      3 1.000           0.999       0.999          0.289 0.874   0.777
#> CV:pam      3 1.000           0.987       0.987          0.300 0.874   0.777
#> MAD:pam     3 1.000           0.999       1.000          0.289 0.874   0.777
#> ATC:pam     3 0.765           0.834       0.885          0.378 0.876   0.781
#> SD:hclust   3 1.000           1.000       1.000          0.290 0.874   0.777
#> CV:hclust   3 1.000           0.998       0.998          0.292 0.874   0.777
#> MAD:hclust  3 1.000           1.000       1.000          0.290 0.874   0.777
#> ATC:hclust  3 0.874           0.820       0.948          0.141 0.990   0.982
get_stats(res_list, k = 4)
#>             k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> SD:NMF      4 0.828           0.911       0.911        0.22041 0.842   0.639
#> CV:NMF      4 0.755           0.892       0.894        0.09677 0.827   0.564
#> MAD:NMF     4 0.909           0.940       0.960        0.16189 0.825   0.575
#> ATC:NMF     4 0.800           0.884       0.917        0.07027 0.993   0.984
#> SD:skmeans  4 0.943           0.947       0.963        0.25969 0.840   0.637
#> CV:skmeans  4 0.931           0.926       0.949        0.11854 0.869   0.649
#> MAD:skmeans 4 0.951           0.926       0.958        0.24290 0.836   0.627
#> ATC:skmeans 4 0.768           0.820       0.887        0.16565 0.936   0.855
#> SD:mclust   4 0.977           0.941       0.968        0.26230 0.840   0.637
#> CV:mclust   4 0.837           0.865       0.933        0.21381 0.842   0.639
#> MAD:mclust  4 0.989           0.966       0.982        0.21051 0.840   0.637
#> ATC:mclust  4 0.826           0.888       0.889        0.14896 0.902   0.747
#> SD:kmeans   4 0.578           0.826       0.832        0.19346 1.000   1.000
#> CV:kmeans   4 0.538           0.629       0.695        0.15739 1.000   1.000
#> MAD:kmeans  4 0.555           0.787       0.806        0.17230 1.000   1.000
#> ATC:kmeans  4 0.549           0.778       0.797        0.16607 1.000   1.000
#> SD:pam      4 0.918           0.948       0.969        0.28411 0.838   0.630
#> CV:pam      4 0.726           0.709       0.779        0.20557 0.846   0.649
#> MAD:pam     4 0.913           0.934       0.968        0.28184 0.838   0.632
#> ATC:pam     4 0.990           0.962       0.975        0.19948 0.832   0.622
#> SD:hclust   4 0.998           0.993       0.993        0.00808 0.998   0.996
#> CV:hclust   4 0.782           0.905       0.922        0.16127 0.877   0.720
#> MAD:hclust  4 0.835           0.946       0.946        0.05718 0.998   0.996
#> ATC:hclust  4 0.882           0.998       0.973        0.07360 0.882   0.788
get_stats(res_list, k = 5)
#>             k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> SD:NMF      5 0.817           0.882       0.904         0.0698 0.978   0.924
#> CV:NMF      5 0.823           0.842       0.859         0.0659 1.000   1.000
#> MAD:NMF     5 0.883           0.765       0.899         0.0497 0.997   0.989
#> ATC:NMF     5 0.807           0.879       0.902         0.1551 0.836   0.624
#> SD:skmeans  5 0.845           0.884       0.896         0.0605 0.953   0.834
#> CV:skmeans  5 0.849           0.812       0.851         0.0559 0.965   0.881
#> MAD:skmeans 5 0.849           0.707       0.822         0.0611 0.951   0.823
#> ATC:skmeans 5 0.774           0.846       0.855         0.0925 0.834   0.578
#> SD:mclust   5 0.955           0.881       0.950         0.0796 0.937   0.780
#> CV:mclust   5 0.901           0.949       0.942         0.0852 0.908   0.691
#> MAD:mclust  5 0.922           0.943       0.958         0.0698 0.929   0.755
#> ATC:mclust  5 0.739           0.867       0.822         0.0634 0.983   0.941
#> SD:kmeans   5 0.655           0.722       0.730         0.1022 0.842   0.639
#> CV:kmeans   5 0.584           0.578       0.747         0.0752 0.818   0.585
#> MAD:kmeans  5 0.625           0.728       0.728         0.1128 0.840   0.637
#> ATC:kmeans  5 0.589           0.462       0.719         0.1026 0.931   0.844
#> SD:pam      5 0.917           0.946       0.974         0.0727 0.950   0.818
#> CV:pam      5 0.798           0.815       0.902         0.0830 0.836   0.518
#> MAD:pam     5 0.933           0.933       0.946         0.0465 0.966   0.880
#> ATC:pam     5 0.914           0.939       0.943         0.0577 0.962   0.863
#> SD:hclust   5 0.949           0.969       0.973         0.0272 0.998   0.996
#> CV:hclust   5 0.819           0.870       0.934         0.0531 0.998   0.995
#> MAD:hclust  5 0.757           0.824       0.863         0.0942 1.000   1.000
#> ATC:hclust  5 1.000           0.998       1.000         0.0584 0.998   0.996
get_stats(res_list, k = 6)
#>             k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> SD:NMF      6 0.845           0.723       0.814        0.05558 0.982   0.936
#> CV:NMF      6 0.789           0.779       0.830        0.04982 0.896   0.634
#> MAD:NMF     6 0.823           0.827       0.854        0.03641 0.953   0.828
#> ATC:NMF     6 0.762           0.793       0.817        0.06746 0.917   0.714
#> SD:skmeans  6 0.799           0.824       0.840        0.04251 0.974   0.888
#> CV:skmeans  6 0.795           0.676       0.758        0.03993 0.909   0.677
#> MAD:skmeans 6 0.857           0.753       0.806        0.03685 0.942   0.768
#> ATC:skmeans 6 0.811           0.825       0.818        0.05377 0.955   0.823
#> SD:mclust   6 0.968           0.902       0.946        0.03861 0.953   0.803
#> CV:mclust   6 0.958           0.921       0.951        0.03516 0.956   0.816
#> MAD:mclust  6 0.931           0.886       0.930        0.03831 0.966   0.852
#> ATC:mclust  6 0.737           0.779       0.828        0.05274 0.975   0.911
#> SD:kmeans   6 0.632           0.450       0.666        0.06015 0.963   0.868
#> CV:kmeans   6 0.601           0.563       0.719        0.05641 0.980   0.924
#> MAD:kmeans  6 0.606           0.539       0.689        0.06938 0.913   0.721
#> ATC:kmeans  6 0.601           0.703       0.689        0.05415 0.836   0.581
#> SD:pam      6 0.907           0.912       0.918        0.04302 0.969   0.862
#> CV:pam      6 0.809           0.836       0.868        0.07259 0.972   0.878
#> MAD:pam     6 0.842           0.896       0.909        0.04683 0.969   0.873
#> ATC:pam     6 0.941           0.952       0.967        0.06055 0.950   0.792
#> SD:hclust   6 0.750           0.485       0.785        0.19637 0.936   0.853
#> CV:hclust   6 0.775           0.774       0.863        0.06673 0.948   0.835
#> MAD:hclust  6 0.749           0.899       0.836        0.12969 0.785   0.509
#> ATC:hclust  6 1.000           0.996       0.999        0.00888 0.995   0.989

Following heatmap plots the partition for each combination of methods and the lightness correspond to the silhouette scores for samples in each method. On top the consensus subgroup is inferred from all methods by taking the mean silhouette scores as weight.

collect_stats(res_list, k = 2)

plot of chunk tab-collect-stats-from-consensus-partition-list-1

collect_stats(res_list, k = 3)

plot of chunk tab-collect-stats-from-consensus-partition-list-2

collect_stats(res_list, k = 4)

plot of chunk tab-collect-stats-from-consensus-partition-list-3

collect_stats(res_list, k = 5)

plot of chunk tab-collect-stats-from-consensus-partition-list-4

collect_stats(res_list, k = 6)

plot of chunk tab-collect-stats-from-consensus-partition-list-5

Partition from all methods

Collect partitions from all methods:

collect_classes(res_list, k = 2)

plot of chunk tab-collect-classes-from-consensus-partition-list-1

collect_classes(res_list, k = 3)

plot of chunk tab-collect-classes-from-consensus-partition-list-2

collect_classes(res_list, k = 4)

plot of chunk tab-collect-classes-from-consensus-partition-list-3

collect_classes(res_list, k = 5)

plot of chunk tab-collect-classes-from-consensus-partition-list-4

collect_classes(res_list, k = 6)

plot of chunk tab-collect-classes-from-consensus-partition-list-5

Top rows overlap

Overlap of top rows from different top-row methods:

top_rows_overlap(res_list, top_n = 1000, method = "euler")

plot of chunk tab-top-rows-overlap-by-euler-1

top_rows_overlap(res_list, top_n = 2000, method = "euler")

plot of chunk tab-top-rows-overlap-by-euler-2

top_rows_overlap(res_list, top_n = 3000, method = "euler")

plot of chunk tab-top-rows-overlap-by-euler-3

top_rows_overlap(res_list, top_n = 4000, method = "euler")

plot of chunk tab-top-rows-overlap-by-euler-4

top_rows_overlap(res_list, top_n = 5000, method = "euler")

plot of chunk tab-top-rows-overlap-by-euler-5

Also visualize the correspondance of rankings between different top-row methods:

top_rows_overlap(res_list, top_n = 1000, method = "correspondance")

plot of chunk tab-top-rows-overlap-by-correspondance-1

top_rows_overlap(res_list, top_n = 2000, method = "correspondance")

plot of chunk tab-top-rows-overlap-by-correspondance-2

top_rows_overlap(res_list, top_n = 3000, method = "correspondance")

plot of chunk tab-top-rows-overlap-by-correspondance-3

top_rows_overlap(res_list, top_n = 4000, method = "correspondance")

plot of chunk tab-top-rows-overlap-by-correspondance-4

top_rows_overlap(res_list, top_n = 5000, method = "correspondance")

plot of chunk tab-top-rows-overlap-by-correspondance-5

Heatmaps of the top rows:

top_rows_heatmap(res_list, top_n = 1000)

plot of chunk tab-top-rows-heatmap-1

top_rows_heatmap(res_list, top_n = 2000)

plot of chunk tab-top-rows-heatmap-2

top_rows_heatmap(res_list, top_n = 3000)

plot of chunk tab-top-rows-heatmap-3

top_rows_heatmap(res_list, top_n = 4000)

plot of chunk tab-top-rows-heatmap-4

top_rows_heatmap(res_list, top_n = 5000)

plot of chunk tab-top-rows-heatmap-5

Results for each method


SD:hclust**

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["SD", "hclust"]
# you can also extract it by
# res = res_list["SD:hclust"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'SD' method.
#>   Subgroups are detected by 'hclust' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 3.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk SD-hclust-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk SD-hclust-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000        0.43504 0.566   0.566
#> 3 3 1.000           1.000       1.000        0.28995 0.874   0.777
#> 4 4 0.998           0.993       0.993        0.00808 0.998   0.996
#> 5 5 0.949           0.969       0.973        0.02725 0.998   0.996
#> 6 6 0.750           0.485       0.785        0.19637 0.936   0.853

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 3
#> attr(,"optional")
#> [1] 2

There is also optional best \(k\) = 2 that is worth to check.

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette p1 p2 p3
#> SRR1643167     1       0          1  1  0  0
#> SRR1643168     1       0          1  1  0  0
#> SRR1643169     1       0          1  1  0  0
#> SRR1643170     1       0          1  1  0  0
#> SRR1643171     1       0          1  1  0  0
#> SRR1643172     1       0          1  1  0  0
#> SRR1643173     1       0          1  1  0  0
#> SRR1643174     1       0          1  1  0  0
#> SRR1643175     1       0          1  1  0  0
#> SRR1643176     1       0          1  1  0  0
#> SRR1643177     1       0          1  1  0  0
#> SRR1643178     1       0          1  1  0  0
#> SRR1643180     1       0          1  1  0  0
#> SRR1643181     1       0          1  1  0  0
#> SRR1643182     1       0          1  1  0  0
#> SRR1643183     1       0          1  1  0  0
#> SRR1643184     1       0          1  1  0  0
#> SRR1643185     1       0          1  1  0  0
#> SRR1643186     1       0          1  1  0  0
#> SRR1643187     1       0          1  1  0  0
#> SRR1643188     1       0          1  1  0  0
#> SRR1643189     1       0          1  1  0  0
#> SRR1643190     1       0          1  1  0  0
#> SRR1643191     1       0          1  1  0  0
#> SRR1643192     1       0          1  1  0  0
#> SRR1643193     1       0          1  1  0  0
#> SRR1643194     1       0          1  1  0  0
#> SRR1643195     1       0          1  1  0  0
#> SRR1643196     1       0          1  1  0  0
#> SRR1643197     1       0          1  1  0  0
#> SRR1643198     1       0          1  1  0  0
#> SRR1643199     1       0          1  1  0  0
#> SRR1643200     1       0          1  1  0  0
#> SRR1643201     1       0          1  1  0  0
#> SRR1643202     1       0          1  1  0  0
#> SRR1643203     1       0          1  1  0  0
#> SRR1643204     1       0          1  1  0  0
#> SRR1643205     3       0          1  0  0  1
#> SRR1643206     3       0          1  0  0  1
#> SRR1643207     3       0          1  0  0  1
#> SRR1643208     3       0          1  0  0  1
#> SRR1643209     3       0          1  0  0  1
#> SRR1643210     3       0          1  0  0  1
#> SRR1643211     3       0          1  0  0  1
#> SRR1643212     3       0          1  0  0  1
#> SRR1643213     3       0          1  0  0  1
#> SRR1643214     3       0          1  0  0  1
#> SRR1643215     3       0          1  0  0  1
#> SRR1643216     3       0          1  0  0  1
#> SRR1643217     3       0          1  0  0  1
#> SRR1643218     3       0          1  0  0  1
#> SRR1643219     3       0          1  0  0  1
#> SRR1643220     3       0          1  0  0  1
#> SRR1643221     3       0          1  0  0  1
#> SRR1643222     3       0          1  0  0  1
#> SRR1643223     3       0          1  0  0  1
#> SRR1643224     3       0          1  0  0  1
#> SRR1643225     3       0          1  0  0  1
#> SRR1643226     3       0          1  0  0  1
#> SRR1643227     3       0          1  0  0  1
#> SRR1643228     3       0          1  0  0  1
#> SRR1643229     3       0          1  0  0  1
#> SRR1643230     3       0          1  0  0  1
#> SRR1643231     3       0          1  0  0  1
#> SRR1643232     3       0          1  0  0  1
#> SRR1643233     3       0          1  0  0  1
#> SRR1643234     3       0          1  0  0  1
#> SRR1643235     3       0          1  0  0  1
#> SRR1643236     3       0          1  0  0  1
#> SRR1643237     3       0          1  0  0  1
#> SRR1643238     3       0          1  0  0  1
#> SRR1643239     3       0          1  0  0  1
#> SRR1643240     3       0          1  0  0  1
#> SRR1643241     3       0          1  0  0  1
#> SRR1643242     3       0          1  0  0  1
#> SRR1643243     3       0          1  0  0  1
#> SRR1643245     3       0          1  0  0  1
#> SRR1643246     3       0          1  0  0  1
#> SRR1643247     3       0          1  0  0  1
#> SRR1643248     3       0          1  0  0  1
#> SRR1643249     3       0          1  0  0  1
#> SRR1643250     1       0          1  1  0  0
#> SRR1643251     1       0          1  1  0  0
#> SRR1643252     1       0          1  1  0  0
#> SRR1643253     1       0          1  1  0  0
#> SRR1643254     1       0          1  1  0  0
#> SRR1643255     1       0          1  1  0  0
#> SRR1643256     1       0          1  1  0  0
#> SRR1643257     1       0          1  1  0  0
#> SRR1643258     1       0          1  1  0  0
#> SRR1643259     1       0          1  1  0  0
#> SRR1643260     1       0          1  1  0  0
#> SRR1643261     1       0          1  1  0  0
#> SRR1643262     1       0          1  1  0  0
#> SRR1643263     1       0          1  1  0  0
#> SRR1643264     1       0          1  1  0  0
#> SRR1643266     1       0          1  1  0  0
#> SRR1643267     1       0          1  1  0  0
#> SRR1643268     1       0          1  1  0  0
#> SRR1643269     1       0          1  1  0  0
#> SRR1643270     1       0          1  1  0  0
#> SRR1643271     1       0          1  1  0  0
#> SRR1643272     1       0          1  1  0  0
#> SRR1643273     1       0          1  1  0  0
#> SRR1643274     1       0          1  1  0  0
#> SRR1643275     1       0          1  1  0  0
#> SRR1643276     1       0          1  1  0  0
#> SRR1643277     1       0          1  1  0  0
#> SRR1643278     1       0          1  1  0  0
#> SRR1643279     1       0          1  1  0  0
#> SRR1643280     1       0          1  1  0  0
#> SRR1643281     1       0          1  1  0  0
#> SRR1643282     1       0          1  1  0  0
#> SRR1643283     1       0          1  1  0  0
#> SRR1643284     1       0          1  1  0  0
#> SRR1643285     1       0          1  1  0  0
#> SRR1643286     1       0          1  1  0  0
#> SRR1643287     1       0          1  1  0  0
#> SRR1643288     1       0          1  1  0  0
#> SRR1643289     1       0          1  1  0  0
#> SRR1643290     1       0          1  1  0  0
#> SRR1643291     1       0          1  1  0  0
#> SRR1643292     1       0          1  1  0  0
#> SRR1643293     1       0          1  1  0  0
#> SRR1643294     1       0          1  1  0  0
#> SRR1643295     1       0          1  1  0  0
#> SRR1643296     1       0          1  1  0  0
#> SRR1643297     1       0          1  1  0  0
#> SRR1643298     1       0          1  1  0  0
#> SRR1643299     1       0          1  1  0  0
#> SRR1643300     1       0          1  1  0  0
#> SRR1643301     1       0          1  1  0  0
#> SRR1643302     1       0          1  1  0  0
#> SRR1643303     1       0          1  1  0  0
#> SRR1643304     1       0          1  1  0  0
#> SRR1643305     1       0          1  1  0  0
#> SRR1643306     1       0          1  1  0  0
#> SRR1643307     1       0          1  1  0  0
#> SRR1643308     1       0          1  1  0  0
#> SRR1643309     1       0          1  1  0  0
#> SRR1643310     1       0          1  1  0  0
#> SRR1643311     1       0          1  1  0  0
#> SRR1643312     1       0          1  1  0  0
#> SRR1643313     1       0          1  1  0  0
#> SRR1643314     1       0          1  1  0  0
#> SRR1643315     1       0          1  1  0  0
#> SRR1643316     1       0          1  1  0  0
#> SRR1643317     1       0          1  1  0  0
#> SRR1643318     1       0          1  1  0  0
#> SRR1643319     1       0          1  1  0  0
#> SRR1643320     1       0          1  1  0  0
#> SRR1643321     1       0          1  1  0  0
#> SRR1643322     1       0          1  1  0  0
#> SRR1643323     1       0          1  1  0  0
#> SRR1643324     1       0          1  1  0  0
#> SRR1643325     1       0          1  1  0  0
#> SRR1643326     1       0          1  1  0  0
#> SRR1643327     1       0          1  1  0  0
#> SRR1643328     1       0          1  1  0  0
#> SRR1643329     1       0          1  1  0  0
#> SRR1643330     1       0          1  1  0  0
#> SRR1643331     1       0          1  1  0  0
#> SRR1643332     1       0          1  1  0  0
#> SRR1643333     1       0          1  1  0  0
#> SRR1643334     1       0          1  1  0  0
#> SRR1643335     1       0          1  1  0  0
#> SRR1643336     1       0          1  1  0  0
#> SRR1643337     1       0          1  1  0  0
#> SRR1643338     1       0          1  1  0  0
#> SRR1643339     1       0          1  1  0  0
#> SRR1643340     1       0          1  1  0  0
#> SRR1643341     1       0          1  1  0  0
#> SRR1643342     1       0          1  1  0  0
#> SRR1643343     1       0          1  1  0  0
#> SRR1643344     1       0          1  1  0  0
#> SRR1643345     1       0          1  1  0  0
#> SRR1643346     1       0          1  1  0  0
#> SRR1643347     1       0          1  1  0  0
#> SRR1643348     1       0          1  1  0  0
#> SRR1643349     1       0          1  1  0  0
#> SRR1643350     1       0          1  1  0  0
#> SRR1643351     1       0          1  1  0  0
#> SRR1643352     1       0          1  1  0  0
#> SRR1643353     1       0          1  1  0  0
#> SRR1643354     1       0          1  1  0  0
#> SRR1643355     1       0          1  1  0  0
#> SRR1643356     1       0          1  1  0  0
#> SRR1643357     1       0          1  1  0  0
#> SRR1643358     1       0          1  1  0  0
#> SRR1643359     1       0          1  1  0  0
#> SRR1643360     1       0          1  1  0  0
#> SRR1643361     1       0          1  1  0  0
#> SRR1643362     1       0          1  1  0  0
#> SRR1643363     1       0          1  1  0  0
#> SRR1643364     1       0          1  1  0  0
#> SRR1643365     1       0          1  1  0  0
#> SRR1643366     1       0          1  1  0  0
#> SRR1643367     1       0          1  1  0  0
#> SRR1643368     1       0          1  1  0  0
#> SRR1643369     1       0          1  1  0  0
#> SRR1643370     1       0          1  1  0  0
#> SRR1643371     1       0          1  1  0  0
#> SRR1643372     1       0          1  1  0  0
#> SRR1643373     1       0          1  1  0  0
#> SRR1643374     1       0          1  1  0  0
#> SRR1643375     1       0          1  1  0  0
#> SRR1643376     1       0          1  1  0  0
#> SRR1643377     1       0          1  1  0  0
#> SRR1643378     1       0          1  1  0  0
#> SRR1643379     1       0          1  1  0  0
#> SRR1643380     1       0          1  1  0  0
#> SRR1643381     1       0          1  1  0  0
#> SRR1643382     1       0          1  1  0  0
#> SRR1643383     1       0          1  1  0  0
#> SRR1643384     1       0          1  1  0  0
#> SRR1643385     1       0          1  1  0  0
#> SRR1643386     1       0          1  1  0  0
#> SRR1643387     1       0          1  1  0  0
#> SRR1643388     1       0          1  1  0  0
#> SRR1643389     1       0          1  1  0  0
#> SRR1643390     1       0          1  1  0  0
#> SRR1643391     1       0          1  1  0  0
#> SRR1643392     1       0          1  1  0  0
#> SRR1643393     1       0          1  1  0  0
#> SRR1643394     1       0          1  1  0  0
#> SRR1643395     1       0          1  1  0  0
#> SRR1643396     1       0          1  1  0  0
#> SRR1643397     1       0          1  1  0  0
#> SRR1643398     1       0          1  1  0  0
#> SRR1643399     1       0          1  1  0  0
#> SRR1643400     1       0          1  1  0  0
#> SRR1643401     1       0          1  1  0  0
#> SRR1643402     1       0          1  1  0  0
#> SRR1643403     1       0          1  1  0  0
#> SRR1643404     1       0          1  1  0  0
#> SRR1643405     1       0          1  1  0  0
#> SRR1643406     1       0          1  1  0  0
#> SRR1643407     1       0          1  1  0  0
#> SRR1643408     1       0          1  1  0  0
#> SRR1643409     1       0          1  1  0  0
#> SRR1643410     1       0          1  1  0  0
#> SRR1643411     1       0          1  1  0  0
#> SRR1643412     1       0          1  1  0  0
#> SRR1643413     1       0          1  1  0  0
#> SRR1643414     1       0          1  1  0  0
#> SRR1643415     1       0          1  1  0  0
#> SRR1643416     1       0          1  1  0  0
#> SRR1643417     1       0          1  1  0  0
#> SRR1643418     1       0          1  1  0  0
#> SRR1643419     1       0          1  1  0  0
#> SRR1643420     1       0          1  1  0  0
#> SRR1643421     1       0          1  1  0  0
#> SRR1643422     1       0          1  1  0  0
#> SRR1643423     1       0          1  1  0  0
#> SRR1643424     1       0          1  1  0  0
#> SRR1643425     1       0          1  1  0  0
#> SRR1643426     1       0          1  1  0  0
#> SRR1643427     1       0          1  1  0  0
#> SRR1643428     1       0          1  1  0  0
#> SRR1643429     1       0          1  1  0  0
#> SRR1643430     1       0          1  1  0  0
#> SRR1643431     1       0          1  1  0  0
#> SRR1643432     1       0          1  1  0  0
#> SRR1643433     1       0          1  1  0  0
#> SRR1643434     1       0          1  1  0  0
#> SRR1643435     1       0          1  1  0  0
#> SRR1643436     1       0          1  1  0  0
#> SRR1643437     1       0          1  1  0  0
#> SRR1643438     1       0          1  1  0  0
#> SRR1643439     1       0          1  1  0  0
#> SRR1643440     1       0          1  1  0  0
#> SRR1643441     1       0          1  1  0  0
#> SRR1643442     1       0          1  1  0  0
#> SRR1643443     2       0          1  0  1  0
#> SRR1643444     2       0          1  0  1  0
#> SRR1643445     2       0          1  0  1  0
#> SRR1643446     2       0          1  0  1  0
#> SRR1643447     2       0          1  0  1  0
#> SRR1643448     2       0          1  0  1  0
#> SRR1643449     2       0          1  0  1  0
#> SRR1643450     2       0          1  0  1  0
#> SRR1643451     2       0          1  0  1  0
#> SRR1643452     2       0          1  0  1  0
#> SRR1643453     2       0          1  0  1  0
#> SRR1643454     2       0          1  0  1  0
#> SRR1643455     2       0          1  0  1  0
#> SRR1643456     2       0          1  0  1  0
#> SRR1643457     2       0          1  0  1  0
#> SRR1643458     2       0          1  0  1  0
#> SRR1643459     2       0          1  0  1  0
#> SRR1643460     2       0          1  0  1  0
#> SRR1643461     2       0          1  0  1  0
#> SRR1643462     2       0          1  0  1  0
#> SRR1643463     2       0          1  0  1  0
#> SRR1643464     2       0          1  0  1  0
#> SRR1643466     2       0          1  0  1  0
#> SRR1643467     2       0          1  0  1  0
#> SRR1643468     2       0          1  0  1  0
#> SRR1643469     2       0          1  0  1  0
#> SRR1643470     2       0          1  0  1  0
#> SRR1643471     2       0          1  0  1  0
#> SRR1643472     2       0          1  0  1  0
#> SRR1643473     2       0          1  0  1  0
#> SRR1643474     2       0          1  0  1  0
#> SRR1643475     2       0          1  0  1  0
#> SRR1643477     2       0          1  0  1  0
#> SRR1643478     2       0          1  0  1  0
#> SRR1643479     2       0          1  0  1  0
#> SRR1643480     2       0          1  0  1  0
#> SRR1643481     2       0          1  0  1  0
#> SRR1643482     2       0          1  0  1  0
#> SRR1643483     2       0          1  0  1  0
#> SRR1643484     2       0          1  0  1  0
#> SRR1643485     2       0          1  0  1  0
#> SRR1643486     2       0          1  0  1  0
#> SRR1643487     2       0          1  0  1  0
#> SRR1643488     2       0          1  0  1  0
#> SRR1643489     2       0          1  0  1  0
#> SRR1643490     2       0          1  0  1  0
#> SRR1643491     2       0          1  0  1  0
#> SRR1643492     2       0          1  0  1  0
#> SRR1643493     2       0          1  0  1  0
#> SRR1643494     2       0          1  0  1  0
#> SRR1643495     2       0          1  0  1  0
#> SRR1643496     2       0          1  0  1  0
#> SRR1643497     2       0          1  0  1  0
#> SRR1643498     2       0          1  0  1  0
#> SRR1643499     2       0          1  0  1  0
#> SRR1643500     2       0          1  0  1  0
#> SRR1643501     2       0          1  0  1  0
#> SRR1643502     2       0          1  0  1  0
#> SRR1643503     2       0          1  0  1  0
#> SRR1643504     2       0          1  0  1  0
#> SRR1643505     2       0          1  0  1  0
#> SRR1643506     2       0          1  0  1  0
#> SRR1643507     2       0          1  0  1  0
#> SRR1643508     2       0          1  0  1  0
#> SRR1643509     2       0          1  0  1  0
#> SRR1643510     2       0          1  0  1  0
#> SRR1643511     2       0          1  0  1  0
#> SRR1643512     2       0          1  0  1  0
#> SRR1643513     2       0          1  0  1  0
#> SRR1643531     2       0          1  0  1  0
#> SRR1643532     2       0          1  0  1  0
#> SRR1643533     2       0          1  0  1  0
#> SRR1643534     2       0          1  0  1  0
#> SRR1643535     2       0          1  0  1  0
#> SRR1643536     2       0          1  0  1  0
#> SRR1643537     2       0          1  0  1  0
#> SRR1643538     2       0          1  0  1  0
#> SRR1643539     2       0          1  0  1  0
#> SRR1643540     2       0          1  0  1  0
#> SRR1643541     2       0          1  0  1  0
#> SRR1643542     2       0          1  0  1  0
#> SRR1643543     2       0          1  0  1  0
#> SRR1643544     2       0          1  0  1  0
#> SRR1643514     2       0          1  0  1  0
#> SRR1643515     2       0          1  0  1  0
#> SRR1643516     2       0          1  0  1  0
#> SRR1643517     2       0          1  0  1  0
#> SRR1643518     2       0          1  0  1  0
#> SRR1643519     2       0          1  0  1  0
#> SRR1643520     2       0          1  0  1  0
#> SRR1643521     2       0          1  0  1  0
#> SRR1643522     2       0          1  0  1  0
#> SRR1643523     2       0          1  0  1  0
#> SRR1643524     2       0          1  0  1  0
#> SRR1643525     2       0          1  0  1  0
#> SRR1643526     2       0          1  0  1  0
#> SRR1643527     2       0          1  0  1  0
#> SRR1643528     2       0          1  0  1  0
#> SRR1643529     2       0          1  0  1  0
#> SRR1643530     2       0          1  0  1  0
#> SRR1643545     2       0          1  0  1  0
#> SRR1643546     2       0          1  0  1  0
#> SRR1643547     2       0          1  0  1  0
#> SRR1643548     2       0          1  0  1  0
#> SRR1643549     2       0          1  0  1  0
#> SRR1643550     2       0          1  0  1  0
#> SRR1643551     2       0          1  0  1  0
#> SRR1643552     2       0          1  0  1  0
#> SRR1643553     2       0          1  0  1  0
#> SRR1643554     2       0          1  0  1  0
#> SRR1643555     2       0          1  0  1  0
#> SRR1643556     2       0          1  0  1  0
#> SRR1643558     2       0          1  0  1  0
#> SRR1643559     2       0          1  0  1  0
#> SRR1643560     2       0          1  0  1  0
#> SRR1643561     2       0          1  0  1  0
#> SRR1643562     2       0          1  0  1  0
#> SRR1643563     2       0          1  0  1  0
#> SRR1643564     2       0          1  0  1  0
#> SRR1643565     2       0          1  0  1  0
#> SRR1643566     2       0          1  0  1  0
#> SRR1643567     2       0          1  0  1  0
#> SRR1643568     2       0          1  0  1  0
#> SRR1643569     2       0          1  0  1  0
#> SRR1643570     2       0          1  0  1  0
#> SRR1643571     2       0          1  0  1  0
#> SRR1643572     2       0          1  0  1  0

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1    p2    p3    p4
#> SRR1643167     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643168     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643169     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643170     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643171     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643172     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643173     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643174     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643175     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643176     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643177     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643178     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643180     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643181     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643182     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643183     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643184     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643185     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643186     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643187     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643188     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643189     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643190     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643191     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643192     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643193     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643194     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643195     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643196     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643197     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643198     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643199     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643200     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643201     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643202     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643203     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643204     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643205     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643206     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643207     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643208     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643209     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643210     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643211     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643212     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643213     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643214     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643215     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643216     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643217     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643218     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643219     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643220     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643221     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643222     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643223     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643224     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643225     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643226     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643227     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643228     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643229     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643230     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643231     4  0.4103      1.000 0.000 0.000 0.256 0.744
#> SRR1643232     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643233     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643234     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643235     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643236     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643237     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643238     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643239     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643240     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643241     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643242     4  0.4103      1.000 0.000 0.000 0.256 0.744
#> SRR1643243     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643245     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643246     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643247     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643248     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643249     4  0.4103      1.000 0.000 0.000 0.256 0.744
#> SRR1643250     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643251     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643252     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643253     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643254     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643255     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643256     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643257     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643258     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643259     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643260     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643261     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643262     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643263     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643264     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643266     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643267     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643268     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643269     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643270     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643271     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643272     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643273     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643274     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643275     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643276     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643277     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643278     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643279     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643280     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643281     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643282     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643283     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643284     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643285     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643286     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643287     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643288     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643289     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643290     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643291     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643292     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643293     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643294     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643295     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643296     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643297     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643298     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643299     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643300     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643301     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643302     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643303     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643304     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643305     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643306     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643307     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643308     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643309     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643310     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643311     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643312     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643313     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643314     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643315     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643316     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643317     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643318     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643319     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643320     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643321     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643322     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643323     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643324     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643325     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643326     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643327     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643328     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643329     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643330     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643331     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643332     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643333     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643334     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643335     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643336     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643337     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643338     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643339     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643340     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643341     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643342     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643343     1  0.0469      0.990 0.988 0.000 0.000 0.012
#> SRR1643344     1  0.0469      0.990 0.988 0.000 0.000 0.012
#> SRR1643345     1  0.0469      0.990 0.988 0.000 0.000 0.012
#> SRR1643346     1  0.0469      0.990 0.988 0.000 0.000 0.012
#> SRR1643347     1  0.0469      0.990 0.988 0.000 0.000 0.012
#> SRR1643348     1  0.0469      0.990 0.988 0.000 0.000 0.012
#> SRR1643349     1  0.0469      0.990 0.988 0.000 0.000 0.012
#> SRR1643350     1  0.0469      0.990 0.988 0.000 0.000 0.012
#> SRR1643351     1  0.0469      0.990 0.988 0.000 0.000 0.012
#> SRR1643352     1  0.0469      0.990 0.988 0.000 0.000 0.012
#> SRR1643353     1  0.0469      0.990 0.988 0.000 0.000 0.012
#> SRR1643354     1  0.0469      0.990 0.988 0.000 0.000 0.012
#> SRR1643355     1  0.0469      0.990 0.988 0.000 0.000 0.012
#> SRR1643356     1  0.0469      0.990 0.988 0.000 0.000 0.012
#> SRR1643357     1  0.0469      0.990 0.988 0.000 0.000 0.012
#> SRR1643358     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643359     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643360     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643361     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643362     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643363     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643364     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643365     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643366     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643367     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643368     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643369     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643370     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643371     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643372     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643373     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643374     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643375     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643376     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643377     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643378     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643379     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643380     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643381     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643382     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643383     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643384     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643385     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643386     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643387     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643388     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643389     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643390     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643391     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643392     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643393     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643394     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643395     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643396     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643397     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643398     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643399     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643400     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643401     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643402     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643403     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643404     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643405     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643406     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643407     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643408     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643409     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643410     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643411     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643412     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643413     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643414     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643415     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643416     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643417     1  0.0592      0.990 0.984 0.000 0.000 0.016
#> SRR1643418     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643419     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643420     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643421     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643422     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643423     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643424     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643425     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643426     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643427     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643428     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643429     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643430     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643431     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643432     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643433     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643434     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643435     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643436     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643437     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643438     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643439     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643440     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643441     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643442     1  0.0188      0.992 0.996 0.000 0.000 0.004
#> SRR1643443     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643444     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643445     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643446     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643447     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643448     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643449     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643450     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643451     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643452     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643453     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643454     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643455     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643456     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643457     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643458     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643459     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643460     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643461     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643462     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643463     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643464     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643466     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643467     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643468     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643469     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643470     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643471     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643472     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643473     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643474     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643475     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643477     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643478     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643479     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643480     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643481     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643482     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643483     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643484     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643485     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643486     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643487     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643488     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643489     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643490     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643491     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643492     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643493     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643494     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643495     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643496     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643497     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643498     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643499     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643500     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643501     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643502     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643503     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643504     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643505     2  0.3942      0.703 0.000 0.764 0.000 0.236
#> SRR1643506     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643507     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643508     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643509     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643510     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643511     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643512     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643513     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643531     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643532     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643533     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643534     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643535     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643536     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643537     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643538     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643539     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643540     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643541     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643542     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643543     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643544     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643514     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643515     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643516     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643517     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643518     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643519     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643520     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643521     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643522     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643523     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643524     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643525     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643526     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643527     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643528     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643529     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643530     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643545     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643546     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643547     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643548     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643549     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643550     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643551     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643552     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643553     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643554     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643555     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643556     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643558     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643559     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643560     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643561     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643562     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643563     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643564     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643565     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643566     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643567     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643568     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643569     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643570     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643571     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643572     2  0.0000      0.998 0.000 1.000 0.000 0.000

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1 p2    p3 p4    p5
#> SRR1643167     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643168     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643169     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643170     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643171     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643172     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643173     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643174     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643175     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643176     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643177     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643178     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643180     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643181     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643182     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643183     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643184     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643185     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643186     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643187     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643188     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643189     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643190     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643191     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643192     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643193     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643194     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643195     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643196     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643197     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643198     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643199     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643200     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643201     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643202     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643203     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643204     1  0.2230      0.935 0.884  0 0.000  0 0.116
#> SRR1643205     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643206     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643207     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643208     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643209     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643210     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643211     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643212     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643213     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643214     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643215     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643216     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643217     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643218     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643219     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643220     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643221     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643222     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643223     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643224     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643225     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643226     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643227     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643228     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643229     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643230     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643231     5  0.2230      1.000 0.000  0 0.116  0 0.884
#> SRR1643232     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643233     3  0.0703      0.973 0.000  0 0.976  0 0.024
#> SRR1643234     3  0.0703      0.973 0.000  0 0.976  0 0.024
#> SRR1643235     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643236     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643237     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643238     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643239     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643240     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643241     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643242     5  0.2230      1.000 0.000  0 0.116  0 0.884
#> SRR1643243     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643245     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643246     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643247     3  0.0000      0.998 0.000  0 1.000  0 0.000
#> SRR1643248     3  0.0703      0.973 0.000  0 0.976  0 0.024
#> SRR1643249     5  0.2230      1.000 0.000  0 0.116  0 0.884
#> SRR1643250     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643251     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643252     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643253     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643254     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643255     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643256     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643257     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643258     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643259     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643260     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643261     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643262     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643263     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643264     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643266     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643267     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643268     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643269     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643270     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643271     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643272     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643273     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643274     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643275     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643276     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643277     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643278     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643279     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643280     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643281     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643282     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643283     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643284     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643285     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643286     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643287     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643288     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643289     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643290     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643291     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643292     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643293     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643294     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643295     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643296     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643297     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643298     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643299     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643300     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643301     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643302     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643303     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643304     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643305     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643306     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643307     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643308     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643309     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643310     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643311     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643312     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643313     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643314     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643315     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643316     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643317     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643318     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643319     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643320     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643321     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643322     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643323     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643324     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643325     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643326     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643327     1  0.1121      0.956 0.956  0 0.000  0 0.044
#> SRR1643328     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643329     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643330     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643331     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643332     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643333     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643334     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643335     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643336     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643337     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643338     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643339     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643340     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643341     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643342     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643343     1  0.1341      0.953 0.944  0 0.000  0 0.056
#> SRR1643344     1  0.1341      0.953 0.944  0 0.000  0 0.056
#> SRR1643345     1  0.1341      0.953 0.944  0 0.000  0 0.056
#> SRR1643346     1  0.1341      0.953 0.944  0 0.000  0 0.056
#> SRR1643347     1  0.1341      0.953 0.944  0 0.000  0 0.056
#> SRR1643348     1  0.1341      0.953 0.944  0 0.000  0 0.056
#> SRR1643349     1  0.1341      0.953 0.944  0 0.000  0 0.056
#> SRR1643350     1  0.1341      0.953 0.944  0 0.000  0 0.056
#> SRR1643351     1  0.1341      0.953 0.944  0 0.000  0 0.056
#> SRR1643352     1  0.1341      0.953 0.944  0 0.000  0 0.056
#> SRR1643353     1  0.1341      0.953 0.944  0 0.000  0 0.056
#> SRR1643354     1  0.1341      0.953 0.944  0 0.000  0 0.056
#> SRR1643355     1  0.1341      0.953 0.944  0 0.000  0 0.056
#> SRR1643356     1  0.1341      0.953 0.944  0 0.000  0 0.056
#> SRR1643357     1  0.1341      0.953 0.944  0 0.000  0 0.056
#> SRR1643358     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643359     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643360     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643361     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643362     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643363     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643364     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643365     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643366     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643367     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643368     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643369     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643370     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643371     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643372     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643373     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643374     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643375     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643376     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643377     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643378     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643379     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643380     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643381     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643382     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643383     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643384     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643385     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643386     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643387     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643388     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643389     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643390     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643391     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643392     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643393     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643394     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643395     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643396     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643397     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643398     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643399     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643400     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643401     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643402     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643403     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643404     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643405     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643406     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643407     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643408     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643409     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643410     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643411     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643412     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643413     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643414     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643415     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643416     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643417     1  0.1965      0.944 0.904  0 0.000  0 0.096
#> SRR1643418     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643419     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643420     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643421     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643422     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643423     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643424     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643425     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643426     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643427     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643428     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643429     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643430     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643431     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643432     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643433     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643434     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643435     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643436     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643437     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643438     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643439     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643440     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643441     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643442     1  0.0000      0.957 1.000  0 0.000  0 0.000
#> SRR1643443     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643505     4  0.0000      0.000 0.000  0 0.000  1 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1 0.000  0 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1 0.000  0 0.000

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1 p2    p3    p4    p5 p6
#> SRR1643167     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643168     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643169     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643170     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643171     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643172     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643173     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643174     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643175     1   0.356      0.405 0.664  0 0.000 0.336 0.000  0
#> SRR1643176     1   0.356      0.405 0.664  0 0.000 0.336 0.000  0
#> SRR1643177     1   0.356      0.405 0.664  0 0.000 0.336 0.000  0
#> SRR1643178     1   0.356      0.405 0.664  0 0.000 0.336 0.000  0
#> SRR1643180     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643181     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643182     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643183     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643184     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643185     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643186     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643187     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643188     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643189     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643190     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643191     1   0.356      0.405 0.664  0 0.000 0.336 0.000  0
#> SRR1643192     1   0.356      0.405 0.664  0 0.000 0.336 0.000  0
#> SRR1643193     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643194     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643195     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643196     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643197     1   0.356      0.405 0.664  0 0.000 0.336 0.000  0
#> SRR1643198     1   0.356      0.405 0.664  0 0.000 0.336 0.000  0
#> SRR1643199     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643200     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643201     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643202     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643203     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643204     1   0.379      0.306 0.584  0 0.000 0.416 0.000  0
#> SRR1643205     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643206     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643207     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643208     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643209     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643210     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643211     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643212     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643213     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643214     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643215     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643216     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643217     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643218     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643219     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643220     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643221     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643222     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643223     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643224     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643225     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643226     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643227     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643228     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643229     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643230     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643231     5   0.000      1.000 0.000  0 0.000 0.000 1.000  0
#> SRR1643232     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643233     3   0.079      0.968 0.000  0 0.968 0.000 0.032  0
#> SRR1643234     3   0.079      0.968 0.000  0 0.968 0.000 0.032  0
#> SRR1643235     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643236     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643237     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643238     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643239     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643240     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643241     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643242     5   0.000      1.000 0.000  0 0.000 0.000 1.000  0
#> SRR1643243     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643245     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643246     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643247     3   0.000      0.998 0.000  0 1.000 0.000 0.000  0
#> SRR1643248     3   0.079      0.968 0.000  0 0.968 0.000 0.032  0
#> SRR1643249     5   0.000      1.000 0.000  0 0.000 0.000 1.000  0
#> SRR1643250     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643251     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643252     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643253     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643254     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643255     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643256     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643257     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643258     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643259     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643260     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643261     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643262     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643263     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643264     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643266     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643267     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643268     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643269     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643270     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643271     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643272     1   0.372     -0.429 0.616  0 0.000 0.384 0.000  0
#> SRR1643273     1   0.362     -0.341 0.648  0 0.000 0.352 0.000  0
#> SRR1643274     1   0.362     -0.341 0.648  0 0.000 0.352 0.000  0
#> SRR1643275     1   0.362     -0.341 0.648  0 0.000 0.352 0.000  0
#> SRR1643276     1   0.362     -0.341 0.648  0 0.000 0.352 0.000  0
#> SRR1643277     1   0.362     -0.341 0.648  0 0.000 0.352 0.000  0
#> SRR1643278     1   0.362     -0.341 0.648  0 0.000 0.352 0.000  0
#> SRR1643279     1   0.362     -0.341 0.648  0 0.000 0.352 0.000  0
#> SRR1643280     1   0.362     -0.341 0.648  0 0.000 0.352 0.000  0
#> SRR1643281     1   0.362     -0.341 0.648  0 0.000 0.352 0.000  0
#> SRR1643282     1   0.362     -0.341 0.648  0 0.000 0.352 0.000  0
#> SRR1643283     1   0.362     -0.341 0.648  0 0.000 0.352 0.000  0
#> SRR1643284     1   0.362     -0.341 0.648  0 0.000 0.352 0.000  0
#> SRR1643285     1   0.362     -0.341 0.648  0 0.000 0.352 0.000  0
#> SRR1643286     1   0.362     -0.341 0.648  0 0.000 0.352 0.000  0
#> SRR1643287     1   0.376     -0.471 0.600  0 0.000 0.400 0.000  0
#> SRR1643288     1   0.376     -0.471 0.600  0 0.000 0.400 0.000  0
#> SRR1643289     1   0.376     -0.471 0.600  0 0.000 0.400 0.000  0
#> SRR1643290     1   0.376     -0.471 0.600  0 0.000 0.400 0.000  0
#> SRR1643291     1   0.376     -0.471 0.600  0 0.000 0.400 0.000  0
#> SRR1643292     1   0.376     -0.471 0.600  0 0.000 0.400 0.000  0
#> SRR1643293     1   0.376     -0.471 0.600  0 0.000 0.400 0.000  0
#> SRR1643294     1   0.376     -0.471 0.600  0 0.000 0.400 0.000  0
#> SRR1643295     1   0.376     -0.471 0.600  0 0.000 0.400 0.000  0
#> SRR1643296     1   0.376     -0.471 0.600  0 0.000 0.400 0.000  0
#> SRR1643297     1   0.376     -0.471 0.600  0 0.000 0.400 0.000  0
#> SRR1643298     1   0.376     -0.471 0.600  0 0.000 0.400 0.000  0
#> SRR1643299     1   0.376     -0.471 0.600  0 0.000 0.400 0.000  0
#> SRR1643300     1   0.376     -0.471 0.600  0 0.000 0.400 0.000  0
#> SRR1643301     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643302     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643303     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643304     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643305     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643306     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643307     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643308     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643309     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643310     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643311     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643312     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643313     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643314     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643315     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643316     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643317     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643318     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643319     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643320     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643321     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643322     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643323     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643324     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643325     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643326     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643327     1   0.000      0.393 1.000  0 0.000 0.000 0.000  0
#> SRR1643328     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643329     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643330     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643331     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643332     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643333     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643334     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643335     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643336     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643337     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643338     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643339     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643340     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643341     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643342     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643343     1   0.381     -0.180 0.572  0 0.000 0.428 0.000  0
#> SRR1643344     1   0.381     -0.180 0.572  0 0.000 0.428 0.000  0
#> SRR1643345     1   0.381     -0.180 0.572  0 0.000 0.428 0.000  0
#> SRR1643346     1   0.381     -0.180 0.572  0 0.000 0.428 0.000  0
#> SRR1643347     1   0.381     -0.180 0.572  0 0.000 0.428 0.000  0
#> SRR1643348     1   0.381     -0.180 0.572  0 0.000 0.428 0.000  0
#> SRR1643349     1   0.381     -0.180 0.572  0 0.000 0.428 0.000  0
#> SRR1643350     1   0.381     -0.180 0.572  0 0.000 0.428 0.000  0
#> SRR1643351     1   0.381     -0.180 0.572  0 0.000 0.428 0.000  0
#> SRR1643352     1   0.381     -0.180 0.572  0 0.000 0.428 0.000  0
#> SRR1643353     1   0.381     -0.180 0.572  0 0.000 0.428 0.000  0
#> SRR1643354     1   0.381     -0.180 0.572  0 0.000 0.428 0.000  0
#> SRR1643355     1   0.381     -0.180 0.572  0 0.000 0.428 0.000  0
#> SRR1643356     1   0.381     -0.180 0.572  0 0.000 0.428 0.000  0
#> SRR1643357     1   0.381     -0.180 0.572  0 0.000 0.428 0.000  0
#> SRR1643358     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643359     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643360     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643361     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643362     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643363     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643364     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643365     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643366     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643367     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643368     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643369     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643370     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643371     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643372     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643373     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643374     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643375     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643376     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643377     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643378     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643379     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643380     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643381     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643382     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643383     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643384     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643385     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643386     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643387     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643388     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643389     1   0.386     -0.657 0.532  0 0.000 0.468 0.000  0
#> SRR1643390     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643391     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643392     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643393     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643394     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643395     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643396     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643397     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643398     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643399     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643400     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643401     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643402     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643403     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643404     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643405     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643406     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643407     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643408     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643409     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643410     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643411     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643412     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643413     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643414     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643415     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643416     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643417     1   0.291      0.488 0.784  0 0.000 0.216 0.000  0
#> SRR1643418     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643419     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643420     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643421     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643422     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643423     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643424     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643425     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643426     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643427     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643428     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643429     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643430     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643431     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643432     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643433     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643434     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643435     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643436     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643437     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643438     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643439     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643440     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643441     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643442     4   0.379      1.000 0.416  0 0.000 0.584 0.000  0
#> SRR1643443     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643444     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643445     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643446     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643447     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643448     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643449     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643450     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643451     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643452     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643453     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643454     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643455     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643456     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643457     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643458     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643459     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643460     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643461     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643462     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643463     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643464     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643466     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643467     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643468     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643469     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643470     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643471     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643472     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643473     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643474     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643475     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643477     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643478     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643479     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643480     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643481     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643482     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643483     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643484     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643485     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643486     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643487     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643488     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643489     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643490     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643491     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643492     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643493     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643494     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643495     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643496     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643497     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643498     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643499     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643500     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643501     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643502     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643503     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643504     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643505     6   0.000      0.000 0.000  0 0.000 0.000 0.000  1
#> SRR1643506     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643507     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643508     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643509     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643510     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643511     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643512     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643513     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643531     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643532     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643533     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643534     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643535     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643536     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643537     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643538     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643539     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643540     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643541     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643542     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643543     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643544     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643514     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643515     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643516     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643517     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643518     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643519     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643520     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643521     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643522     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643523     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643524     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643525     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643526     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643527     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643528     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643529     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643530     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643545     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643546     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643547     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643548     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643549     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643550     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643551     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643552     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643553     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643554     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643555     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643556     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643558     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643559     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643560     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643561     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643562     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643563     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643564     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643565     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643566     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643567     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643568     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643569     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643570     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643571     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0
#> SRR1643572     2   0.000      1.000 0.000  1 0.000 0.000 0.000  0

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-SD-hclust-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-SD-hclust-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-SD-hclust-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-SD-hclust-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-SD-hclust-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-SD-hclust-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-SD-hclust-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-SD-hclust-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-SD-hclust-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-SD-hclust-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-SD-hclust-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-SD-hclust-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-SD-hclust-get-signatures-3

get_signatures(res, k = 5)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-SD-hclust-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-SD-hclust-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-SD-hclust-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-SD-hclust-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-SD-hclust-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-SD-hclust-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-SD-hclust-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk SD-hclust-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-SD-hclust-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-SD-hclust-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-SD-hclust-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-SD-hclust-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-SD-hclust-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk SD-hclust-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


SD:kmeans

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["SD", "kmeans"]
# you can also extract it by
# res = res_list["SD:kmeans"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'SD' method.
#>   Subgroups are detected by 'kmeans' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 2.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk SD-kmeans-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk SD-kmeans-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 0.509           0.971       0.942         0.4029 0.566   0.566
#> 3 3 0.824           0.961       0.926         0.3272 0.874   0.777
#> 4 4 0.578           0.826       0.832         0.1935 1.000   1.000
#> 5 5 0.655           0.722       0.730         0.1022 0.842   0.639
#> 6 6 0.632           0.450       0.666         0.0601 0.963   0.868

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 2

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette    p1    p2
#> SRR1643167     1   0.574      0.975 0.864 0.136
#> SRR1643168     1   0.574      0.975 0.864 0.136
#> SRR1643169     1   0.574      0.975 0.864 0.136
#> SRR1643170     1   0.574      0.975 0.864 0.136
#> SRR1643171     1   0.574      0.975 0.864 0.136
#> SRR1643172     1   0.574      0.975 0.864 0.136
#> SRR1643173     1   0.574      0.975 0.864 0.136
#> SRR1643174     1   0.574      0.975 0.864 0.136
#> SRR1643175     1   0.574      0.975 0.864 0.136
#> SRR1643176     1   0.574      0.975 0.864 0.136
#> SRR1643177     1   0.574      0.975 0.864 0.136
#> SRR1643178     1   0.574      0.975 0.864 0.136
#> SRR1643180     1   0.574      0.975 0.864 0.136
#> SRR1643181     1   0.574      0.975 0.864 0.136
#> SRR1643182     1   0.574      0.975 0.864 0.136
#> SRR1643183     1   0.574      0.975 0.864 0.136
#> SRR1643184     1   0.574      0.975 0.864 0.136
#> SRR1643185     1   0.574      0.975 0.864 0.136
#> SRR1643186     1   0.574      0.975 0.864 0.136
#> SRR1643187     1   0.574      0.975 0.864 0.136
#> SRR1643188     1   0.574      0.975 0.864 0.136
#> SRR1643189     1   0.574      0.975 0.864 0.136
#> SRR1643190     1   0.574      0.975 0.864 0.136
#> SRR1643191     1   0.574      0.975 0.864 0.136
#> SRR1643192     1   0.574      0.975 0.864 0.136
#> SRR1643193     1   0.574      0.975 0.864 0.136
#> SRR1643194     1   0.574      0.975 0.864 0.136
#> SRR1643195     1   0.574      0.975 0.864 0.136
#> SRR1643196     1   0.574      0.975 0.864 0.136
#> SRR1643197     1   0.574      0.975 0.864 0.136
#> SRR1643198     1   0.574      0.975 0.864 0.136
#> SRR1643199     1   0.574      0.975 0.864 0.136
#> SRR1643200     1   0.574      0.975 0.864 0.136
#> SRR1643201     1   0.574      0.975 0.864 0.136
#> SRR1643202     1   0.574      0.975 0.864 0.136
#> SRR1643203     1   0.574      0.975 0.864 0.136
#> SRR1643204     1   0.574      0.975 0.864 0.136
#> SRR1643205     1   0.000      0.866 1.000 0.000
#> SRR1643206     1   0.000      0.866 1.000 0.000
#> SRR1643207     1   0.000      0.866 1.000 0.000
#> SRR1643208     1   0.000      0.866 1.000 0.000
#> SRR1643209     1   0.000      0.866 1.000 0.000
#> SRR1643210     1   0.000      0.866 1.000 0.000
#> SRR1643211     1   0.000      0.866 1.000 0.000
#> SRR1643212     1   0.000      0.866 1.000 0.000
#> SRR1643213     1   0.000      0.866 1.000 0.000
#> SRR1643214     1   0.000      0.866 1.000 0.000
#> SRR1643215     1   0.000      0.866 1.000 0.000
#> SRR1643216     1   0.000      0.866 1.000 0.000
#> SRR1643217     1   0.000      0.866 1.000 0.000
#> SRR1643218     1   0.000      0.866 1.000 0.000
#> SRR1643219     1   0.000      0.866 1.000 0.000
#> SRR1643220     1   0.000      0.866 1.000 0.000
#> SRR1643221     1   0.000      0.866 1.000 0.000
#> SRR1643222     1   0.000      0.866 1.000 0.000
#> SRR1643223     1   0.000      0.866 1.000 0.000
#> SRR1643224     1   0.000      0.866 1.000 0.000
#> SRR1643225     1   0.000      0.866 1.000 0.000
#> SRR1643226     1   0.000      0.866 1.000 0.000
#> SRR1643227     1   0.000      0.866 1.000 0.000
#> SRR1643228     1   0.000      0.866 1.000 0.000
#> SRR1643229     1   0.000      0.866 1.000 0.000
#> SRR1643230     1   0.000      0.866 1.000 0.000
#> SRR1643231     1   0.000      0.866 1.000 0.000
#> SRR1643232     1   0.000      0.866 1.000 0.000
#> SRR1643233     1   0.000      0.866 1.000 0.000
#> SRR1643234     1   0.000      0.866 1.000 0.000
#> SRR1643235     1   0.000      0.866 1.000 0.000
#> SRR1643236     1   0.000      0.866 1.000 0.000
#> SRR1643237     1   0.000      0.866 1.000 0.000
#> SRR1643238     1   0.000      0.866 1.000 0.000
#> SRR1643239     1   0.000      0.866 1.000 0.000
#> SRR1643240     1   0.000      0.866 1.000 0.000
#> SRR1643241     1   0.000      0.866 1.000 0.000
#> SRR1643242     1   0.000      0.866 1.000 0.000
#> SRR1643243     1   0.000      0.866 1.000 0.000
#> SRR1643245     1   0.000      0.866 1.000 0.000
#> SRR1643246     1   0.000      0.866 1.000 0.000
#> SRR1643247     1   0.000      0.866 1.000 0.000
#> SRR1643248     1   0.000      0.866 1.000 0.000
#> SRR1643249     1   0.000      0.866 1.000 0.000
#> SRR1643250     1   0.574      0.975 0.864 0.136
#> SRR1643251     1   0.574      0.975 0.864 0.136
#> SRR1643252     1   0.574      0.975 0.864 0.136
#> SRR1643253     1   0.574      0.975 0.864 0.136
#> SRR1643254     1   0.574      0.975 0.864 0.136
#> SRR1643255     1   0.574      0.975 0.864 0.136
#> SRR1643256     1   0.574      0.975 0.864 0.136
#> SRR1643257     1   0.574      0.975 0.864 0.136
#> SRR1643258     1   0.574      0.975 0.864 0.136
#> SRR1643259     1   0.574      0.975 0.864 0.136
#> SRR1643260     1   0.574      0.975 0.864 0.136
#> SRR1643261     1   0.574      0.975 0.864 0.136
#> SRR1643262     1   0.574      0.975 0.864 0.136
#> SRR1643263     1   0.574      0.975 0.864 0.136
#> SRR1643264     1   0.574      0.975 0.864 0.136
#> SRR1643266     1   0.574      0.975 0.864 0.136
#> SRR1643267     1   0.574      0.975 0.864 0.136
#> SRR1643268     1   0.574      0.975 0.864 0.136
#> SRR1643269     1   0.574      0.975 0.864 0.136
#> SRR1643270     1   0.574      0.975 0.864 0.136
#> SRR1643271     1   0.574      0.975 0.864 0.136
#> SRR1643272     1   0.574      0.975 0.864 0.136
#> SRR1643273     1   0.574      0.975 0.864 0.136
#> SRR1643274     1   0.574      0.975 0.864 0.136
#> SRR1643275     1   0.574      0.975 0.864 0.136
#> SRR1643276     1   0.574      0.975 0.864 0.136
#> SRR1643277     1   0.574      0.975 0.864 0.136
#> SRR1643278     1   0.574      0.975 0.864 0.136
#> SRR1643279     1   0.574      0.975 0.864 0.136
#> SRR1643280     1   0.574      0.975 0.864 0.136
#> SRR1643281     1   0.574      0.975 0.864 0.136
#> SRR1643282     1   0.574      0.975 0.864 0.136
#> SRR1643283     1   0.574      0.975 0.864 0.136
#> SRR1643284     1   0.574      0.975 0.864 0.136
#> SRR1643285     1   0.574      0.975 0.864 0.136
#> SRR1643286     1   0.574      0.975 0.864 0.136
#> SRR1643287     1   0.574      0.975 0.864 0.136
#> SRR1643288     1   0.574      0.975 0.864 0.136
#> SRR1643289     1   0.574      0.975 0.864 0.136
#> SRR1643290     1   0.574      0.975 0.864 0.136
#> SRR1643291     1   0.574      0.975 0.864 0.136
#> SRR1643292     1   0.574      0.975 0.864 0.136
#> SRR1643293     1   0.574      0.975 0.864 0.136
#> SRR1643294     1   0.574      0.975 0.864 0.136
#> SRR1643295     1   0.574      0.975 0.864 0.136
#> SRR1643296     1   0.574      0.975 0.864 0.136
#> SRR1643297     1   0.574      0.975 0.864 0.136
#> SRR1643298     1   0.574      0.975 0.864 0.136
#> SRR1643299     1   0.574      0.975 0.864 0.136
#> SRR1643300     1   0.574      0.975 0.864 0.136
#> SRR1643301     1   0.574      0.975 0.864 0.136
#> SRR1643302     1   0.574      0.975 0.864 0.136
#> SRR1643303     1   0.574      0.975 0.864 0.136
#> SRR1643304     1   0.574      0.975 0.864 0.136
#> SRR1643305     1   0.574      0.975 0.864 0.136
#> SRR1643306     1   0.574      0.975 0.864 0.136
#> SRR1643307     1   0.574      0.975 0.864 0.136
#> SRR1643308     1   0.574      0.975 0.864 0.136
#> SRR1643309     1   0.574      0.975 0.864 0.136
#> SRR1643310     1   0.574      0.975 0.864 0.136
#> SRR1643311     1   0.574      0.975 0.864 0.136
#> SRR1643312     1   0.574      0.975 0.864 0.136
#> SRR1643313     1   0.574      0.975 0.864 0.136
#> SRR1643314     1   0.574      0.975 0.864 0.136
#> SRR1643315     1   0.574      0.975 0.864 0.136
#> SRR1643316     1   0.574      0.975 0.864 0.136
#> SRR1643317     1   0.574      0.975 0.864 0.136
#> SRR1643318     1   0.574      0.975 0.864 0.136
#> SRR1643319     1   0.574      0.975 0.864 0.136
#> SRR1643320     1   0.574      0.975 0.864 0.136
#> SRR1643321     1   0.574      0.975 0.864 0.136
#> SRR1643322     1   0.574      0.975 0.864 0.136
#> SRR1643323     1   0.574      0.975 0.864 0.136
#> SRR1643324     1   0.574      0.975 0.864 0.136
#> SRR1643325     1   0.574      0.975 0.864 0.136
#> SRR1643326     1   0.574      0.975 0.864 0.136
#> SRR1643327     1   0.574      0.975 0.864 0.136
#> SRR1643328     1   0.574      0.975 0.864 0.136
#> SRR1643329     1   0.574      0.975 0.864 0.136
#> SRR1643330     1   0.574      0.975 0.864 0.136
#> SRR1643331     1   0.574      0.975 0.864 0.136
#> SRR1643332     1   0.574      0.975 0.864 0.136
#> SRR1643333     1   0.574      0.975 0.864 0.136
#> SRR1643334     1   0.574      0.975 0.864 0.136
#> SRR1643335     1   0.574      0.975 0.864 0.136
#> SRR1643336     1   0.574      0.975 0.864 0.136
#> SRR1643337     1   0.574      0.975 0.864 0.136
#> SRR1643338     1   0.574      0.975 0.864 0.136
#> SRR1643339     1   0.574      0.975 0.864 0.136
#> SRR1643340     1   0.574      0.975 0.864 0.136
#> SRR1643341     1   0.574      0.975 0.864 0.136
#> SRR1643342     1   0.574      0.975 0.864 0.136
#> SRR1643343     1   0.574      0.975 0.864 0.136
#> SRR1643344     1   0.574      0.975 0.864 0.136
#> SRR1643345     1   0.574      0.975 0.864 0.136
#> SRR1643346     1   0.574      0.975 0.864 0.136
#> SRR1643347     1   0.574      0.975 0.864 0.136
#> SRR1643348     1   0.574      0.975 0.864 0.136
#> SRR1643349     1   0.574      0.975 0.864 0.136
#> SRR1643350     1   0.574      0.975 0.864 0.136
#> SRR1643351     1   0.574      0.975 0.864 0.136
#> SRR1643352     1   0.574      0.975 0.864 0.136
#> SRR1643353     1   0.574      0.975 0.864 0.136
#> SRR1643354     1   0.574      0.975 0.864 0.136
#> SRR1643355     1   0.574      0.975 0.864 0.136
#> SRR1643356     1   0.574      0.975 0.864 0.136
#> SRR1643357     1   0.574      0.975 0.864 0.136
#> SRR1643358     1   0.574      0.975 0.864 0.136
#> SRR1643359     1   0.574      0.975 0.864 0.136
#> SRR1643360     1   0.574      0.975 0.864 0.136
#> SRR1643361     1   0.574      0.975 0.864 0.136
#> SRR1643362     1   0.574      0.975 0.864 0.136
#> SRR1643363     1   0.574      0.975 0.864 0.136
#> SRR1643364     1   0.574      0.975 0.864 0.136
#> SRR1643365     1   0.574      0.975 0.864 0.136
#> SRR1643366     1   0.574      0.975 0.864 0.136
#> SRR1643367     1   0.574      0.975 0.864 0.136
#> SRR1643368     1   0.574      0.975 0.864 0.136
#> SRR1643369     1   0.574      0.975 0.864 0.136
#> SRR1643370     1   0.574      0.975 0.864 0.136
#> SRR1643371     1   0.574      0.975 0.864 0.136
#> SRR1643372     1   0.574      0.975 0.864 0.136
#> SRR1643373     1   0.574      0.975 0.864 0.136
#> SRR1643374     1   0.574      0.975 0.864 0.136
#> SRR1643375     1   0.574      0.975 0.864 0.136
#> SRR1643376     1   0.574      0.975 0.864 0.136
#> SRR1643377     1   0.574      0.975 0.864 0.136
#> SRR1643378     1   0.574      0.975 0.864 0.136
#> SRR1643379     1   0.574      0.975 0.864 0.136
#> SRR1643380     1   0.574      0.975 0.864 0.136
#> SRR1643381     1   0.574      0.975 0.864 0.136
#> SRR1643382     1   0.574      0.975 0.864 0.136
#> SRR1643383     1   0.574      0.975 0.864 0.136
#> SRR1643384     1   0.574      0.975 0.864 0.136
#> SRR1643385     1   0.574      0.975 0.864 0.136
#> SRR1643386     1   0.574      0.975 0.864 0.136
#> SRR1643387     1   0.574      0.975 0.864 0.136
#> SRR1643388     1   0.574      0.975 0.864 0.136
#> SRR1643389     1   0.574      0.975 0.864 0.136
#> SRR1643390     1   0.574      0.975 0.864 0.136
#> SRR1643391     1   0.574      0.975 0.864 0.136
#> SRR1643392     1   0.574      0.975 0.864 0.136
#> SRR1643393     1   0.574      0.975 0.864 0.136
#> SRR1643394     1   0.574      0.975 0.864 0.136
#> SRR1643395     1   0.574      0.975 0.864 0.136
#> SRR1643396     1   0.574      0.975 0.864 0.136
#> SRR1643397     1   0.574      0.975 0.864 0.136
#> SRR1643398     1   0.574      0.975 0.864 0.136
#> SRR1643399     1   0.574      0.975 0.864 0.136
#> SRR1643400     1   0.574      0.975 0.864 0.136
#> SRR1643401     1   0.574      0.975 0.864 0.136
#> SRR1643402     1   0.574      0.975 0.864 0.136
#> SRR1643403     1   0.574      0.975 0.864 0.136
#> SRR1643404     1   0.574      0.975 0.864 0.136
#> SRR1643405     1   0.574      0.975 0.864 0.136
#> SRR1643406     1   0.574      0.975 0.864 0.136
#> SRR1643407     1   0.574      0.975 0.864 0.136
#> SRR1643408     1   0.574      0.975 0.864 0.136
#> SRR1643409     1   0.574      0.975 0.864 0.136
#> SRR1643410     1   0.574      0.975 0.864 0.136
#> SRR1643411     1   0.574      0.975 0.864 0.136
#> SRR1643412     1   0.574      0.975 0.864 0.136
#> SRR1643413     1   0.574      0.975 0.864 0.136
#> SRR1643414     1   0.574      0.975 0.864 0.136
#> SRR1643415     1   0.574      0.975 0.864 0.136
#> SRR1643416     1   0.574      0.975 0.864 0.136
#> SRR1643417     1   0.574      0.975 0.864 0.136
#> SRR1643418     1   0.574      0.975 0.864 0.136
#> SRR1643419     1   0.574      0.975 0.864 0.136
#> SRR1643420     1   0.574      0.975 0.864 0.136
#> SRR1643421     1   0.574      0.975 0.864 0.136
#> SRR1643422     1   0.574      0.975 0.864 0.136
#> SRR1643423     1   0.574      0.975 0.864 0.136
#> SRR1643424     1   0.574      0.975 0.864 0.136
#> SRR1643425     1   0.574      0.975 0.864 0.136
#> SRR1643426     1   0.574      0.975 0.864 0.136
#> SRR1643427     1   0.574      0.975 0.864 0.136
#> SRR1643428     1   0.574      0.975 0.864 0.136
#> SRR1643429     1   0.574      0.975 0.864 0.136
#> SRR1643430     1   0.574      0.975 0.864 0.136
#> SRR1643431     1   0.574      0.975 0.864 0.136
#> SRR1643432     1   0.574      0.975 0.864 0.136
#> SRR1643433     1   0.574      0.975 0.864 0.136
#> SRR1643434     1   0.574      0.975 0.864 0.136
#> SRR1643435     1   0.574      0.975 0.864 0.136
#> SRR1643436     1   0.574      0.975 0.864 0.136
#> SRR1643437     1   0.574      0.975 0.864 0.136
#> SRR1643438     1   0.574      0.975 0.864 0.136
#> SRR1643439     1   0.574      0.975 0.864 0.136
#> SRR1643440     1   0.574      0.975 0.864 0.136
#> SRR1643441     1   0.574      0.975 0.864 0.136
#> SRR1643442     1   0.574      0.975 0.864 0.136
#> SRR1643443     2   0.000      1.000 0.000 1.000
#> SRR1643444     2   0.000      1.000 0.000 1.000
#> SRR1643445     2   0.000      1.000 0.000 1.000
#> SRR1643446     2   0.000      1.000 0.000 1.000
#> SRR1643447     2   0.000      1.000 0.000 1.000
#> SRR1643448     2   0.000      1.000 0.000 1.000
#> SRR1643449     2   0.000      1.000 0.000 1.000
#> SRR1643450     2   0.000      1.000 0.000 1.000
#> SRR1643451     2   0.000      1.000 0.000 1.000
#> SRR1643452     2   0.000      1.000 0.000 1.000
#> SRR1643453     2   0.000      1.000 0.000 1.000
#> SRR1643454     2   0.000      1.000 0.000 1.000
#> SRR1643455     2   0.000      1.000 0.000 1.000
#> SRR1643456     2   0.000      1.000 0.000 1.000
#> SRR1643457     2   0.000      1.000 0.000 1.000
#> SRR1643458     2   0.000      1.000 0.000 1.000
#> SRR1643459     2   0.000      1.000 0.000 1.000
#> SRR1643460     2   0.000      1.000 0.000 1.000
#> SRR1643461     2   0.000      1.000 0.000 1.000
#> SRR1643462     2   0.000      1.000 0.000 1.000
#> SRR1643463     2   0.000      1.000 0.000 1.000
#> SRR1643464     2   0.000      1.000 0.000 1.000
#> SRR1643466     2   0.000      1.000 0.000 1.000
#> SRR1643467     2   0.000      1.000 0.000 1.000
#> SRR1643468     2   0.000      1.000 0.000 1.000
#> SRR1643469     2   0.000      1.000 0.000 1.000
#> SRR1643470     2   0.000      1.000 0.000 1.000
#> SRR1643471     2   0.000      1.000 0.000 1.000
#> SRR1643472     2   0.000      1.000 0.000 1.000
#> SRR1643473     2   0.000      1.000 0.000 1.000
#> SRR1643474     2   0.000      1.000 0.000 1.000
#> SRR1643475     2   0.000      1.000 0.000 1.000
#> SRR1643477     2   0.000      1.000 0.000 1.000
#> SRR1643478     2   0.000      1.000 0.000 1.000
#> SRR1643479     2   0.000      1.000 0.000 1.000
#> SRR1643480     2   0.000      1.000 0.000 1.000
#> SRR1643481     2   0.000      1.000 0.000 1.000
#> SRR1643482     2   0.000      1.000 0.000 1.000
#> SRR1643483     2   0.000      1.000 0.000 1.000
#> SRR1643484     2   0.000      1.000 0.000 1.000
#> SRR1643485     2   0.000      1.000 0.000 1.000
#> SRR1643486     2   0.000      1.000 0.000 1.000
#> SRR1643487     2   0.000      1.000 0.000 1.000
#> SRR1643488     2   0.000      1.000 0.000 1.000
#> SRR1643489     2   0.000      1.000 0.000 1.000
#> SRR1643490     2   0.000      1.000 0.000 1.000
#> SRR1643491     2   0.000      1.000 0.000 1.000
#> SRR1643492     2   0.000      1.000 0.000 1.000
#> SRR1643493     2   0.000      1.000 0.000 1.000
#> SRR1643494     2   0.000      1.000 0.000 1.000
#> SRR1643495     2   0.000      1.000 0.000 1.000
#> SRR1643496     2   0.000      1.000 0.000 1.000
#> SRR1643497     2   0.000      1.000 0.000 1.000
#> SRR1643498     2   0.000      1.000 0.000 1.000
#> SRR1643499     2   0.000      1.000 0.000 1.000
#> SRR1643500     2   0.000      1.000 0.000 1.000
#> SRR1643501     2   0.000      1.000 0.000 1.000
#> SRR1643502     2   0.000      1.000 0.000 1.000
#> SRR1643503     2   0.000      1.000 0.000 1.000
#> SRR1643504     2   0.000      1.000 0.000 1.000
#> SRR1643505     2   0.000      1.000 0.000 1.000
#> SRR1643506     2   0.000      1.000 0.000 1.000
#> SRR1643507     2   0.000      1.000 0.000 1.000
#> SRR1643508     2   0.000      1.000 0.000 1.000
#> SRR1643509     2   0.000      1.000 0.000 1.000
#> SRR1643510     2   0.000      1.000 0.000 1.000
#> SRR1643511     2   0.000      1.000 0.000 1.000
#> SRR1643512     2   0.000      1.000 0.000 1.000
#> SRR1643513     2   0.000      1.000 0.000 1.000
#> SRR1643531     2   0.000      1.000 0.000 1.000
#> SRR1643532     2   0.000      1.000 0.000 1.000
#> SRR1643533     2   0.000      1.000 0.000 1.000
#> SRR1643534     2   0.000      1.000 0.000 1.000
#> SRR1643535     2   0.000      1.000 0.000 1.000
#> SRR1643536     2   0.000      1.000 0.000 1.000
#> SRR1643537     2   0.000      1.000 0.000 1.000
#> SRR1643538     2   0.000      1.000 0.000 1.000
#> SRR1643539     2   0.000      1.000 0.000 1.000
#> SRR1643540     2   0.000      1.000 0.000 1.000
#> SRR1643541     2   0.000      1.000 0.000 1.000
#> SRR1643542     2   0.000      1.000 0.000 1.000
#> SRR1643543     2   0.000      1.000 0.000 1.000
#> SRR1643544     2   0.000      1.000 0.000 1.000
#> SRR1643514     2   0.000      1.000 0.000 1.000
#> SRR1643515     2   0.000      1.000 0.000 1.000
#> SRR1643516     2   0.000      1.000 0.000 1.000
#> SRR1643517     2   0.000      1.000 0.000 1.000
#> SRR1643518     2   0.000      1.000 0.000 1.000
#> SRR1643519     2   0.000      1.000 0.000 1.000
#> SRR1643520     2   0.000      1.000 0.000 1.000
#> SRR1643521     2   0.000      1.000 0.000 1.000
#> SRR1643522     2   0.000      1.000 0.000 1.000
#> SRR1643523     2   0.000      1.000 0.000 1.000
#> SRR1643524     2   0.000      1.000 0.000 1.000
#> SRR1643525     2   0.000      1.000 0.000 1.000
#> SRR1643526     2   0.000      1.000 0.000 1.000
#> SRR1643527     2   0.000      1.000 0.000 1.000
#> SRR1643528     2   0.000      1.000 0.000 1.000
#> SRR1643529     2   0.000      1.000 0.000 1.000
#> SRR1643530     2   0.000      1.000 0.000 1.000
#> SRR1643545     2   0.000      1.000 0.000 1.000
#> SRR1643546     2   0.000      1.000 0.000 1.000
#> SRR1643547     2   0.000      1.000 0.000 1.000
#> SRR1643548     2   0.000      1.000 0.000 1.000
#> SRR1643549     2   0.000      1.000 0.000 1.000
#> SRR1643550     2   0.000      1.000 0.000 1.000
#> SRR1643551     2   0.000      1.000 0.000 1.000
#> SRR1643552     2   0.000      1.000 0.000 1.000
#> SRR1643553     2   0.000      1.000 0.000 1.000
#> SRR1643554     2   0.000      1.000 0.000 1.000
#> SRR1643555     2   0.000      1.000 0.000 1.000
#> SRR1643556     2   0.000      1.000 0.000 1.000
#> SRR1643558     2   0.000      1.000 0.000 1.000
#> SRR1643559     2   0.000      1.000 0.000 1.000
#> SRR1643560     2   0.000      1.000 0.000 1.000
#> SRR1643561     2   0.000      1.000 0.000 1.000
#> SRR1643562     2   0.000      1.000 0.000 1.000
#> SRR1643563     2   0.000      1.000 0.000 1.000
#> SRR1643564     2   0.000      1.000 0.000 1.000
#> SRR1643565     2   0.000      1.000 0.000 1.000
#> SRR1643566     2   0.000      1.000 0.000 1.000
#> SRR1643567     2   0.000      1.000 0.000 1.000
#> SRR1643568     2   0.000      1.000 0.000 1.000
#> SRR1643569     2   0.000      1.000 0.000 1.000
#> SRR1643570     2   0.000      1.000 0.000 1.000
#> SRR1643571     2   0.000      1.000 0.000 1.000
#> SRR1643572     2   0.000      1.000 0.000 1.000

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1    p2    p3
#> SRR1643167     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643168     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643169     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643170     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643171     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643172     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643173     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643174     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643175     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643176     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643177     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643178     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643180     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643181     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643182     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643183     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643184     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643185     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643186     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643187     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643188     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643189     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643190     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643191     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643192     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643193     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643194     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643195     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643196     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643197     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643198     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643199     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643200     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643201     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643202     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643203     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643204     1  0.1753      0.942 0.952 0.000 0.048
#> SRR1643205     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643206     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643207     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643208     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643209     3  0.5845      0.997 0.308 0.004 0.688
#> SRR1643210     3  0.5845      0.997 0.308 0.004 0.688
#> SRR1643211     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643212     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643213     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643214     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643215     3  0.6172      0.996 0.308 0.012 0.680
#> SRR1643216     3  0.6172      0.996 0.308 0.012 0.680
#> SRR1643217     3  0.6172      0.996 0.308 0.012 0.680
#> SRR1643218     3  0.6172      0.996 0.308 0.012 0.680
#> SRR1643219     3  0.6172      0.996 0.308 0.012 0.680
#> SRR1643220     3  0.6172      0.996 0.308 0.012 0.680
#> SRR1643221     3  0.5845      0.997 0.308 0.004 0.688
#> SRR1643222     3  0.5845      0.997 0.308 0.004 0.688
#> SRR1643223     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643224     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643225     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643226     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643227     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643228     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643229     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643230     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643231     3  0.6172      0.996 0.308 0.012 0.680
#> SRR1643232     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643233     3  0.6313      0.995 0.308 0.016 0.676
#> SRR1643234     3  0.6313      0.995 0.308 0.016 0.676
#> SRR1643235     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643236     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643237     3  0.5621      0.997 0.308 0.000 0.692
#> SRR1643238     3  0.5845      0.997 0.308 0.004 0.688
#> SRR1643239     3  0.5845      0.997 0.308 0.004 0.688
#> SRR1643240     3  0.5845      0.997 0.308 0.004 0.688
#> SRR1643241     3  0.5845      0.997 0.308 0.004 0.688
#> SRR1643242     3  0.6313      0.995 0.308 0.016 0.676
#> SRR1643243     3  0.6313      0.995 0.308 0.016 0.676
#> SRR1643245     3  0.6313      0.995 0.308 0.016 0.676
#> SRR1643246     3  0.6313      0.995 0.308 0.016 0.676
#> SRR1643247     3  0.6313      0.995 0.308 0.016 0.676
#> SRR1643248     3  0.6018      0.996 0.308 0.008 0.684
#> SRR1643249     3  0.6313      0.995 0.308 0.016 0.676
#> SRR1643250     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643251     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643252     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643253     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643254     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643255     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643256     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643257     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643258     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643259     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643260     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643261     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643262     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643263     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643264     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643266     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643267     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643268     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643269     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643270     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643271     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643272     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643273     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643274     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643275     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643276     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643277     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643278     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643279     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643280     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643281     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643282     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643283     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643284     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643285     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643286     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643287     1  0.0424      0.982 0.992 0.000 0.008
#> SRR1643288     1  0.0424      0.982 0.992 0.000 0.008
#> SRR1643289     1  0.0424      0.982 0.992 0.000 0.008
#> SRR1643290     1  0.0424      0.982 0.992 0.000 0.008
#> SRR1643291     1  0.0424      0.982 0.992 0.000 0.008
#> SRR1643292     1  0.0424      0.982 0.992 0.000 0.008
#> SRR1643293     1  0.0424      0.982 0.992 0.000 0.008
#> SRR1643294     1  0.0424      0.982 0.992 0.000 0.008
#> SRR1643295     1  0.0424      0.982 0.992 0.000 0.008
#> SRR1643296     1  0.0424      0.982 0.992 0.000 0.008
#> SRR1643297     1  0.0424      0.982 0.992 0.000 0.008
#> SRR1643298     1  0.0424      0.982 0.992 0.000 0.008
#> SRR1643299     1  0.0424      0.982 0.992 0.000 0.008
#> SRR1643300     1  0.0424      0.982 0.992 0.000 0.008
#> SRR1643301     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643302     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643303     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643304     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643305     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643306     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643307     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643308     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643309     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643310     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643311     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643312     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643313     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643314     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643315     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643316     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643317     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643318     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643319     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643320     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643321     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643322     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643323     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643324     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643325     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643326     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643327     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643328     1  0.0237      0.984 0.996 0.000 0.004
#> SRR1643329     1  0.0237      0.984 0.996 0.000 0.004
#> SRR1643330     1  0.0237      0.984 0.996 0.000 0.004
#> SRR1643331     1  0.0237      0.984 0.996 0.000 0.004
#> SRR1643332     1  0.0237      0.984 0.996 0.000 0.004
#> SRR1643333     1  0.0237      0.984 0.996 0.000 0.004
#> SRR1643334     1  0.0237      0.984 0.996 0.000 0.004
#> SRR1643335     1  0.0237      0.984 0.996 0.000 0.004
#> SRR1643336     1  0.0237      0.984 0.996 0.000 0.004
#> SRR1643337     1  0.0237      0.984 0.996 0.000 0.004
#> SRR1643338     1  0.0237      0.984 0.996 0.000 0.004
#> SRR1643339     1  0.0237      0.984 0.996 0.000 0.004
#> SRR1643340     1  0.0237      0.984 0.996 0.000 0.004
#> SRR1643341     1  0.0237      0.984 0.996 0.000 0.004
#> SRR1643342     1  0.0237      0.984 0.996 0.000 0.004
#> SRR1643343     1  0.0424      0.981 0.992 0.000 0.008
#> SRR1643344     1  0.0424      0.981 0.992 0.000 0.008
#> SRR1643345     1  0.0424      0.981 0.992 0.000 0.008
#> SRR1643346     1  0.0424      0.981 0.992 0.000 0.008
#> SRR1643347     1  0.0424      0.981 0.992 0.000 0.008
#> SRR1643348     1  0.0424      0.981 0.992 0.000 0.008
#> SRR1643349     1  0.0424      0.981 0.992 0.000 0.008
#> SRR1643350     1  0.0424      0.981 0.992 0.000 0.008
#> SRR1643351     1  0.0424      0.981 0.992 0.000 0.008
#> SRR1643352     1  0.0424      0.981 0.992 0.000 0.008
#> SRR1643353     1  0.0424      0.981 0.992 0.000 0.008
#> SRR1643354     1  0.0424      0.981 0.992 0.000 0.008
#> SRR1643355     1  0.0424      0.981 0.992 0.000 0.008
#> SRR1643356     1  0.0424      0.981 0.992 0.000 0.008
#> SRR1643357     1  0.0424      0.981 0.992 0.000 0.008
#> SRR1643358     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643359     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643360     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643361     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643362     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643363     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643364     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643365     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643366     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643367     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643368     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643369     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643370     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643371     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643372     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643373     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643374     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643375     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643376     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643377     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643378     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643379     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643380     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643381     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643382     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643383     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643384     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643385     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643386     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643387     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643388     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643389     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643390     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643391     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643392     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643393     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643394     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643395     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643396     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643397     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643398     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643399     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643400     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643401     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643402     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643403     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643404     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643405     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643406     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643407     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643408     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643409     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643410     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643411     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643412     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643413     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643414     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643415     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643416     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643417     1  0.0000      0.985 1.000 0.000 0.000
#> SRR1643418     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643419     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643420     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643421     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643422     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643423     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643424     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643425     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643426     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643427     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643428     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643429     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643430     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643431     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643432     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643433     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643434     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643435     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643436     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643437     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643438     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643439     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643440     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643441     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643442     1  0.0592      0.978 0.988 0.000 0.012
#> SRR1643443     2  0.4953      0.903 0.016 0.808 0.176
#> SRR1643444     2  0.4953      0.903 0.016 0.808 0.176
#> SRR1643445     2  0.4953      0.903 0.016 0.808 0.176
#> SRR1643446     2  0.4953      0.903 0.016 0.808 0.176
#> SRR1643447     2  0.4953      0.903 0.016 0.808 0.176
#> SRR1643448     2  0.4953      0.903 0.016 0.808 0.176
#> SRR1643449     2  0.4953      0.903 0.016 0.808 0.176
#> SRR1643450     2  0.4953      0.903 0.016 0.808 0.176
#> SRR1643451     2  0.4953      0.903 0.016 0.808 0.176
#> SRR1643452     2  0.4953      0.903 0.016 0.808 0.176
#> SRR1643453     2  0.4953      0.903 0.016 0.808 0.176
#> SRR1643454     2  0.4953      0.903 0.016 0.808 0.176
#> SRR1643455     2  0.4953      0.903 0.016 0.808 0.176
#> SRR1643456     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643457     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643458     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643459     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643460     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643461     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643462     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643463     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643464     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643466     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643467     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643468     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643469     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643470     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643471     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643472     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643473     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643474     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643475     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643477     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643478     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643479     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643480     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643481     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643482     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643483     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643484     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643485     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643486     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643487     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643488     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643489     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643490     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643491     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643492     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643493     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643494     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643495     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643496     2  0.2599      0.926 0.016 0.932 0.052
#> SRR1643497     2  0.2804      0.925 0.016 0.924 0.060
#> SRR1643498     2  0.2804      0.925 0.016 0.924 0.060
#> SRR1643499     2  0.2804      0.925 0.016 0.924 0.060
#> SRR1643500     2  0.2804      0.925 0.016 0.924 0.060
#> SRR1643501     2  0.2804      0.925 0.016 0.924 0.060
#> SRR1643502     2  0.2804      0.925 0.016 0.924 0.060
#> SRR1643503     2  0.2804      0.925 0.016 0.924 0.060
#> SRR1643504     2  0.2804      0.925 0.016 0.924 0.060
#> SRR1643505     2  0.2804      0.925 0.016 0.924 0.060
#> SRR1643506     2  0.2804      0.925 0.016 0.924 0.060
#> SRR1643507     2  0.2804      0.925 0.016 0.924 0.060
#> SRR1643508     2  0.2804      0.925 0.016 0.924 0.060
#> SRR1643509     2  0.2804      0.925 0.016 0.924 0.060
#> SRR1643510     2  0.2804      0.925 0.016 0.924 0.060
#> SRR1643511     2  0.2804      0.925 0.016 0.924 0.060
#> SRR1643512     2  0.2804      0.925 0.016 0.924 0.060
#> SRR1643513     2  0.2804      0.925 0.016 0.924 0.060
#> SRR1643531     2  0.4897      0.904 0.016 0.812 0.172
#> SRR1643532     2  0.4897      0.904 0.016 0.812 0.172
#> SRR1643533     2  0.4897      0.904 0.016 0.812 0.172
#> SRR1643534     2  0.4897      0.904 0.016 0.812 0.172
#> SRR1643535     2  0.4897      0.904 0.016 0.812 0.172
#> SRR1643536     2  0.4897      0.904 0.016 0.812 0.172
#> SRR1643537     2  0.4897      0.904 0.016 0.812 0.172
#> SRR1643538     2  0.4897      0.904 0.016 0.812 0.172
#> SRR1643539     2  0.4897      0.904 0.016 0.812 0.172
#> SRR1643540     2  0.4897      0.904 0.016 0.812 0.172
#> SRR1643541     2  0.4897      0.904 0.016 0.812 0.172
#> SRR1643542     2  0.4897      0.904 0.016 0.812 0.172
#> SRR1643543     2  0.4897      0.904 0.016 0.812 0.172
#> SRR1643544     2  0.4897      0.904 0.016 0.812 0.172
#> SRR1643514     2  0.3769      0.923 0.016 0.880 0.104
#> SRR1643515     2  0.3769      0.923 0.016 0.880 0.104
#> SRR1643516     2  0.3769      0.923 0.016 0.880 0.104
#> SRR1643517     2  0.3769      0.923 0.016 0.880 0.104
#> SRR1643518     2  0.3769      0.923 0.016 0.880 0.104
#> SRR1643519     2  0.3769      0.923 0.016 0.880 0.104
#> SRR1643520     2  0.3769      0.923 0.016 0.880 0.104
#> SRR1643521     2  0.3769      0.923 0.016 0.880 0.104
#> SRR1643522     2  0.3769      0.923 0.016 0.880 0.104
#> SRR1643523     2  0.3769      0.923 0.016 0.880 0.104
#> SRR1643524     2  0.3769      0.923 0.016 0.880 0.104
#> SRR1643525     2  0.3769      0.923 0.016 0.880 0.104
#> SRR1643526     2  0.3769      0.923 0.016 0.880 0.104
#> SRR1643527     2  0.3769      0.923 0.016 0.880 0.104
#> SRR1643528     2  0.3769      0.923 0.016 0.880 0.104
#> SRR1643529     2  0.3769      0.923 0.016 0.880 0.104
#> SRR1643530     2  0.3769      0.923 0.016 0.880 0.104
#> SRR1643545     2  0.2031      0.929 0.016 0.952 0.032
#> SRR1643546     2  0.2031      0.929 0.016 0.952 0.032
#> SRR1643547     2  0.2031      0.929 0.016 0.952 0.032
#> SRR1643548     2  0.2031      0.929 0.016 0.952 0.032
#> SRR1643549     2  0.2031      0.929 0.016 0.952 0.032
#> SRR1643550     2  0.2031      0.929 0.016 0.952 0.032
#> SRR1643551     2  0.2031      0.929 0.016 0.952 0.032
#> SRR1643552     2  0.2031      0.929 0.016 0.952 0.032
#> SRR1643553     2  0.2031      0.929 0.016 0.952 0.032
#> SRR1643554     2  0.2031      0.929 0.016 0.952 0.032
#> SRR1643555     2  0.2031      0.929 0.016 0.952 0.032
#> SRR1643556     2  0.2031      0.929 0.016 0.952 0.032
#> SRR1643558     2  0.2031      0.929 0.016 0.952 0.032
#> SRR1643559     2  0.3921      0.921 0.016 0.872 0.112
#> SRR1643560     2  0.3921      0.921 0.016 0.872 0.112
#> SRR1643561     2  0.3921      0.921 0.016 0.872 0.112
#> SRR1643562     2  0.3921      0.921 0.016 0.872 0.112
#> SRR1643563     2  0.3921      0.921 0.016 0.872 0.112
#> SRR1643564     2  0.3921      0.921 0.016 0.872 0.112
#> SRR1643565     2  0.3921      0.921 0.016 0.872 0.112
#> SRR1643566     2  0.3921      0.921 0.016 0.872 0.112
#> SRR1643567     2  0.3921      0.921 0.016 0.872 0.112
#> SRR1643568     2  0.3921      0.921 0.016 0.872 0.112
#> SRR1643569     2  0.3921      0.921 0.016 0.872 0.112
#> SRR1643570     2  0.3921      0.921 0.016 0.872 0.112
#> SRR1643571     2  0.3921      0.921 0.016 0.872 0.112
#> SRR1643572     2  0.3921      0.921 0.016 0.872 0.112

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1    p2    p3 p4
#> SRR1643167     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643168     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643169     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643170     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643171     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643172     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643173     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643174     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643175     1  0.4123      0.680 0.772 0.000 0.008 NA
#> SRR1643176     1  0.4123      0.680 0.772 0.000 0.008 NA
#> SRR1643177     1  0.4123      0.680 0.772 0.000 0.008 NA
#> SRR1643178     1  0.4123      0.680 0.772 0.000 0.008 NA
#> SRR1643180     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643181     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643182     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643183     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643184     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643185     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643186     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643187     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643188     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643189     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643190     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643191     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643192     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643193     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643194     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643195     1  0.4908      0.733 0.692 0.000 0.016 NA
#> SRR1643196     1  0.4908      0.733 0.692 0.000 0.016 NA
#> SRR1643197     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643198     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643199     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643200     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643201     1  0.4434      0.668 0.756 0.000 0.016 NA
#> SRR1643202     1  0.4434      0.668 0.756 0.000 0.016 NA
#> SRR1643203     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643204     1  0.4399      0.671 0.760 0.000 0.016 NA
#> SRR1643205     3  0.2647      0.988 0.120 0.000 0.880 NA
#> SRR1643206     3  0.2647      0.988 0.120 0.000 0.880 NA
#> SRR1643207     3  0.2647      0.988 0.120 0.000 0.880 NA
#> SRR1643208     3  0.2647      0.988 0.120 0.000 0.880 NA
#> SRR1643209     3  0.3638      0.987 0.120 0.000 0.848 NA
#> SRR1643210     3  0.3638      0.987 0.120 0.000 0.848 NA
#> SRR1643211     3  0.2647      0.988 0.120 0.000 0.880 NA
#> SRR1643212     3  0.2647      0.988 0.120 0.000 0.880 NA
#> SRR1643213     3  0.2647      0.988 0.120 0.000 0.880 NA
#> SRR1643214     3  0.2647      0.988 0.120 0.000 0.880 NA
#> SRR1643215     3  0.3991      0.985 0.120 0.000 0.832 NA
#> SRR1643216     3  0.3991      0.985 0.120 0.000 0.832 NA
#> SRR1643217     3  0.3991      0.985 0.120 0.000 0.832 NA
#> SRR1643218     3  0.3991      0.985 0.120 0.000 0.832 NA
#> SRR1643219     3  0.3991      0.985 0.120 0.000 0.832 NA
#> SRR1643220     3  0.3991      0.985 0.120 0.000 0.832 NA
#> SRR1643221     3  0.3335      0.988 0.120 0.000 0.860 NA
#> SRR1643222     3  0.3335      0.988 0.120 0.000 0.860 NA
#> SRR1643223     3  0.2647      0.988 0.120 0.000 0.880 NA
#> SRR1643224     3  0.2647      0.988 0.120 0.000 0.880 NA
#> SRR1643225     3  0.2647      0.988 0.120 0.000 0.880 NA
#> SRR1643226     3  0.2647      0.988 0.120 0.000 0.880 NA
#> SRR1643227     3  0.2976      0.988 0.120 0.000 0.872 NA
#> SRR1643228     3  0.2976      0.988 0.120 0.000 0.872 NA
#> SRR1643229     3  0.2976      0.988 0.120 0.000 0.872 NA
#> SRR1643230     3  0.2831      0.988 0.120 0.000 0.876 NA
#> SRR1643231     3  0.4301      0.981 0.120 0.000 0.816 NA
#> SRR1643232     3  0.2647      0.988 0.120 0.000 0.880 NA
#> SRR1643233     3  0.4227      0.982 0.120 0.000 0.820 NA
#> SRR1643234     3  0.4227      0.982 0.120 0.000 0.820 NA
#> SRR1643235     3  0.2647      0.988 0.120 0.000 0.880 NA
#> SRR1643236     3  0.2647      0.988 0.120 0.000 0.880 NA
#> SRR1643237     3  0.2647      0.988 0.120 0.000 0.880 NA
#> SRR1643238     3  0.3224      0.988 0.120 0.000 0.864 NA
#> SRR1643239     3  0.3224      0.988 0.120 0.000 0.864 NA
#> SRR1643240     3  0.3224      0.988 0.120 0.000 0.864 NA
#> SRR1643241     3  0.3224      0.988 0.120 0.000 0.864 NA
#> SRR1643242     3  0.4374      0.979 0.120 0.000 0.812 NA
#> SRR1643243     3  0.3991      0.984 0.120 0.000 0.832 NA
#> SRR1643245     3  0.3991      0.984 0.120 0.000 0.832 NA
#> SRR1643246     3  0.3991      0.984 0.120 0.000 0.832 NA
#> SRR1643247     3  0.3991      0.984 0.120 0.000 0.832 NA
#> SRR1643248     3  0.3821      0.986 0.120 0.000 0.840 NA
#> SRR1643249     3  0.4646      0.971 0.120 0.000 0.796 NA
#> SRR1643250     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643251     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643252     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643253     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643254     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643255     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643256     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643257     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643258     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643259     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643260     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643261     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643262     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643263     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643264     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643266     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643267     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643268     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643269     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643270     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643271     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643272     1  0.4072      0.798 0.748 0.000 0.000 NA
#> SRR1643273     1  0.2216      0.817 0.908 0.000 0.000 NA
#> SRR1643274     1  0.2216      0.817 0.908 0.000 0.000 NA
#> SRR1643275     1  0.2216      0.817 0.908 0.000 0.000 NA
#> SRR1643276     1  0.2216      0.817 0.908 0.000 0.000 NA
#> SRR1643277     1  0.2216      0.817 0.908 0.000 0.000 NA
#> SRR1643278     1  0.2216      0.817 0.908 0.000 0.000 NA
#> SRR1643279     1  0.2216      0.817 0.908 0.000 0.000 NA
#> SRR1643280     1  0.2216      0.817 0.908 0.000 0.000 NA
#> SRR1643281     1  0.2216      0.817 0.908 0.000 0.000 NA
#> SRR1643282     1  0.2216      0.817 0.908 0.000 0.000 NA
#> SRR1643283     1  0.2216      0.817 0.908 0.000 0.000 NA
#> SRR1643284     1  0.2216      0.817 0.908 0.000 0.000 NA
#> SRR1643285     1  0.2216      0.817 0.908 0.000 0.000 NA
#> SRR1643286     1  0.2216      0.817 0.908 0.000 0.000 NA
#> SRR1643287     1  0.4250      0.781 0.724 0.000 0.000 NA
#> SRR1643288     1  0.4250      0.781 0.724 0.000 0.000 NA
#> SRR1643289     1  0.4250      0.781 0.724 0.000 0.000 NA
#> SRR1643290     1  0.4250      0.781 0.724 0.000 0.000 NA
#> SRR1643291     1  0.4250      0.781 0.724 0.000 0.000 NA
#> SRR1643292     1  0.4250      0.781 0.724 0.000 0.000 NA
#> SRR1643293     1  0.4250      0.781 0.724 0.000 0.000 NA
#> SRR1643294     1  0.4250      0.781 0.724 0.000 0.000 NA
#> SRR1643295     1  0.4250      0.781 0.724 0.000 0.000 NA
#> SRR1643296     1  0.4250      0.781 0.724 0.000 0.000 NA
#> SRR1643297     1  0.4250      0.781 0.724 0.000 0.000 NA
#> SRR1643298     1  0.4250      0.781 0.724 0.000 0.000 NA
#> SRR1643299     1  0.4250      0.781 0.724 0.000 0.000 NA
#> SRR1643300     1  0.4250      0.781 0.724 0.000 0.000 NA
#> SRR1643301     1  0.2408      0.818 0.896 0.000 0.000 NA
#> SRR1643302     1  0.2408      0.818 0.896 0.000 0.000 NA
#> SRR1643303     1  0.2408      0.818 0.896 0.000 0.000 NA
#> SRR1643304     1  0.2408      0.818 0.896 0.000 0.000 NA
#> SRR1643305     1  0.2408      0.818 0.896 0.000 0.000 NA
#> SRR1643306     1  0.2408      0.818 0.896 0.000 0.000 NA
#> SRR1643307     1  0.2408      0.818 0.896 0.000 0.000 NA
#> SRR1643308     1  0.2408      0.818 0.896 0.000 0.000 NA
#> SRR1643309     1  0.2408      0.818 0.896 0.000 0.000 NA
#> SRR1643310     1  0.2408      0.818 0.896 0.000 0.000 NA
#> SRR1643311     1  0.2408      0.818 0.896 0.000 0.000 NA
#> SRR1643312     1  0.2408      0.818 0.896 0.000 0.000 NA
#> SRR1643313     1  0.2408      0.818 0.896 0.000 0.000 NA
#> SRR1643314     1  0.0188      0.802 0.996 0.000 0.000 NA
#> SRR1643315     1  0.0188      0.802 0.996 0.000 0.000 NA
#> SRR1643316     1  0.0188      0.802 0.996 0.000 0.000 NA
#> SRR1643317     1  0.0188      0.802 0.996 0.000 0.000 NA
#> SRR1643318     1  0.0188      0.802 0.996 0.000 0.000 NA
#> SRR1643319     1  0.0188      0.802 0.996 0.000 0.000 NA
#> SRR1643320     1  0.0188      0.802 0.996 0.000 0.000 NA
#> SRR1643321     1  0.0188      0.802 0.996 0.000 0.000 NA
#> SRR1643322     1  0.0188      0.802 0.996 0.000 0.000 NA
#> SRR1643323     1  0.0188      0.802 0.996 0.000 0.000 NA
#> SRR1643324     1  0.0188      0.802 0.996 0.000 0.000 NA
#> SRR1643325     1  0.0188      0.802 0.996 0.000 0.000 NA
#> SRR1643326     1  0.0188      0.802 0.996 0.000 0.000 NA
#> SRR1643327     1  0.0188      0.802 0.996 0.000 0.000 NA
#> SRR1643328     1  0.2197      0.775 0.916 0.000 0.004 NA
#> SRR1643329     1  0.2197      0.775 0.916 0.000 0.004 NA
#> SRR1643330     1  0.2197      0.775 0.916 0.000 0.004 NA
#> SRR1643331     1  0.2197      0.775 0.916 0.000 0.004 NA
#> SRR1643332     1  0.2197      0.775 0.916 0.000 0.004 NA
#> SRR1643333     1  0.2197      0.775 0.916 0.000 0.004 NA
#> SRR1643334     1  0.2197      0.775 0.916 0.000 0.004 NA
#> SRR1643335     1  0.2197      0.775 0.916 0.000 0.004 NA
#> SRR1643336     1  0.2197      0.775 0.916 0.000 0.004 NA
#> SRR1643337     1  0.2197      0.775 0.916 0.000 0.004 NA
#> SRR1643338     1  0.2197      0.775 0.916 0.000 0.004 NA
#> SRR1643339     1  0.2197      0.775 0.916 0.000 0.004 NA
#> SRR1643340     1  0.2197      0.775 0.916 0.000 0.004 NA
#> SRR1643341     1  0.2197      0.775 0.916 0.000 0.004 NA
#> SRR1643342     1  0.2197      0.775 0.916 0.000 0.004 NA
#> SRR1643343     1  0.2266      0.813 0.912 0.000 0.004 NA
#> SRR1643344     1  0.2266      0.813 0.912 0.000 0.004 NA
#> SRR1643345     1  0.2266      0.813 0.912 0.000 0.004 NA
#> SRR1643346     1  0.2266      0.813 0.912 0.000 0.004 NA
#> SRR1643347     1  0.2266      0.813 0.912 0.000 0.004 NA
#> SRR1643348     1  0.2266      0.813 0.912 0.000 0.004 NA
#> SRR1643349     1  0.2266      0.813 0.912 0.000 0.004 NA
#> SRR1643350     1  0.2266      0.813 0.912 0.000 0.004 NA
#> SRR1643351     1  0.2266      0.813 0.912 0.000 0.004 NA
#> SRR1643352     1  0.2266      0.813 0.912 0.000 0.004 NA
#> SRR1643353     1  0.2266      0.813 0.912 0.000 0.004 NA
#> SRR1643354     1  0.2266      0.813 0.912 0.000 0.004 NA
#> SRR1643355     1  0.2266      0.813 0.912 0.000 0.004 NA
#> SRR1643356     1  0.2266      0.813 0.912 0.000 0.004 NA
#> SRR1643357     1  0.2266      0.813 0.912 0.000 0.004 NA
#> SRR1643358     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643359     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643360     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643361     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643362     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643363     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643364     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643365     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643366     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643367     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643368     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643369     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643370     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643371     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643372     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643373     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643374     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643375     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643376     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643377     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643378     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643379     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643380     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643381     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643382     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643383     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643384     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643385     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643386     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643387     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643388     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643389     1  0.4103      0.797 0.744 0.000 0.000 NA
#> SRR1643390     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643391     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643392     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643393     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643394     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643395     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643396     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643397     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643398     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643399     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643400     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643401     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643402     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643403     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643404     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643405     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643406     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643407     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643408     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643409     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643410     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643411     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643412     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643413     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643414     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643415     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643416     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643417     1  0.1978      0.781 0.928 0.000 0.004 NA
#> SRR1643418     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643419     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643420     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643421     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643422     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643423     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643424     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643425     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643426     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643427     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643428     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643429     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643430     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643431     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643432     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643433     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643434     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643435     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643436     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643437     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643438     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643439     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643440     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643441     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643442     1  0.4605      0.748 0.664 0.000 0.000 NA
#> SRR1643443     2  0.4868      0.844 0.000 0.684 0.012 NA
#> SRR1643444     2  0.4868      0.844 0.000 0.684 0.012 NA
#> SRR1643445     2  0.4868      0.844 0.000 0.684 0.012 NA
#> SRR1643446     2  0.4868      0.844 0.000 0.684 0.012 NA
#> SRR1643447     2  0.4868      0.844 0.000 0.684 0.012 NA
#> SRR1643448     2  0.4868      0.844 0.000 0.684 0.012 NA
#> SRR1643449     2  0.4868      0.844 0.000 0.684 0.012 NA
#> SRR1643450     2  0.4868      0.844 0.000 0.684 0.012 NA
#> SRR1643451     2  0.4868      0.844 0.000 0.684 0.012 NA
#> SRR1643452     2  0.4868      0.844 0.000 0.684 0.012 NA
#> SRR1643453     2  0.4868      0.844 0.000 0.684 0.012 NA
#> SRR1643454     2  0.4868      0.844 0.000 0.684 0.012 NA
#> SRR1643455     2  0.4868      0.844 0.000 0.684 0.012 NA
#> SRR1643456     2  0.0336      0.880 0.000 0.992 0.000 NA
#> SRR1643457     2  0.0336      0.880 0.000 0.992 0.000 NA
#> SRR1643458     2  0.0336      0.880 0.000 0.992 0.000 NA
#> SRR1643459     2  0.0336      0.880 0.000 0.992 0.000 NA
#> SRR1643460     2  0.0336      0.880 0.000 0.992 0.000 NA
#> SRR1643461     2  0.0336      0.880 0.000 0.992 0.000 NA
#> SRR1643462     2  0.0336      0.880 0.000 0.992 0.000 NA
#> SRR1643463     2  0.0336      0.880 0.000 0.992 0.000 NA
#> SRR1643464     2  0.0336      0.880 0.000 0.992 0.000 NA
#> SRR1643466     2  0.0336      0.880 0.000 0.992 0.000 NA
#> SRR1643467     2  0.0336      0.880 0.000 0.992 0.000 NA
#> SRR1643468     2  0.0895      0.879 0.000 0.976 0.004 NA
#> SRR1643469     2  0.0895      0.879 0.000 0.976 0.004 NA
#> SRR1643470     2  0.0895      0.879 0.000 0.976 0.004 NA
#> SRR1643471     2  0.0895      0.879 0.000 0.976 0.004 NA
#> SRR1643472     2  0.0895      0.879 0.000 0.976 0.004 NA
#> SRR1643473     2  0.0895      0.879 0.000 0.976 0.004 NA
#> SRR1643474     2  0.0895      0.879 0.000 0.976 0.004 NA
#> SRR1643475     2  0.0895      0.879 0.000 0.976 0.004 NA
#> SRR1643477     2  0.0895      0.879 0.000 0.976 0.004 NA
#> SRR1643478     2  0.0895      0.879 0.000 0.976 0.004 NA
#> SRR1643479     2  0.0895      0.879 0.000 0.976 0.004 NA
#> SRR1643480     2  0.0895      0.879 0.000 0.976 0.004 NA
#> SRR1643481     2  0.1174      0.880 0.000 0.968 0.012 NA
#> SRR1643482     2  0.1174      0.880 0.000 0.968 0.012 NA
#> SRR1643483     2  0.1174      0.880 0.000 0.968 0.012 NA
#> SRR1643484     2  0.1174      0.880 0.000 0.968 0.012 NA
#> SRR1643485     2  0.1174      0.880 0.000 0.968 0.012 NA
#> SRR1643486     2  0.1174      0.880 0.000 0.968 0.012 NA
#> SRR1643487     2  0.1174      0.880 0.000 0.968 0.012 NA
#> SRR1643488     2  0.1174      0.880 0.000 0.968 0.012 NA
#> SRR1643489     2  0.1174      0.880 0.000 0.968 0.012 NA
#> SRR1643490     2  0.1174      0.880 0.000 0.968 0.012 NA
#> SRR1643491     2  0.1174      0.880 0.000 0.968 0.012 NA
#> SRR1643492     2  0.1174      0.880 0.000 0.968 0.012 NA
#> SRR1643493     2  0.1174      0.880 0.000 0.968 0.012 NA
#> SRR1643494     2  0.1174      0.880 0.000 0.968 0.012 NA
#> SRR1643495     2  0.1174      0.880 0.000 0.968 0.012 NA
#> SRR1643496     2  0.1174      0.880 0.000 0.968 0.012 NA
#> SRR1643497     2  0.3013      0.874 0.000 0.888 0.032 NA
#> SRR1643498     2  0.3013      0.874 0.000 0.888 0.032 NA
#> SRR1643499     2  0.3013      0.874 0.000 0.888 0.032 NA
#> SRR1643500     2  0.3013      0.874 0.000 0.888 0.032 NA
#> SRR1643501     2  0.3013      0.874 0.000 0.888 0.032 NA
#> SRR1643502     2  0.3013      0.874 0.000 0.888 0.032 NA
#> SRR1643503     2  0.3013      0.874 0.000 0.888 0.032 NA
#> SRR1643504     2  0.3013      0.874 0.000 0.888 0.032 NA
#> SRR1643505     2  0.3308      0.870 0.000 0.872 0.036 NA
#> SRR1643506     2  0.3013      0.874 0.000 0.888 0.032 NA
#> SRR1643507     2  0.3013      0.874 0.000 0.888 0.032 NA
#> SRR1643508     2  0.3013      0.874 0.000 0.888 0.032 NA
#> SRR1643509     2  0.3013      0.874 0.000 0.888 0.032 NA
#> SRR1643510     2  0.3013      0.874 0.000 0.888 0.032 NA
#> SRR1643511     2  0.3013      0.874 0.000 0.888 0.032 NA
#> SRR1643512     2  0.3013      0.874 0.000 0.888 0.032 NA
#> SRR1643513     2  0.3013      0.874 0.000 0.888 0.032 NA
#> SRR1643531     2  0.4741      0.842 0.000 0.668 0.004 NA
#> SRR1643532     2  0.4741      0.842 0.000 0.668 0.004 NA
#> SRR1643533     2  0.4741      0.842 0.000 0.668 0.004 NA
#> SRR1643534     2  0.4741      0.842 0.000 0.668 0.004 NA
#> SRR1643535     2  0.4857      0.842 0.000 0.668 0.008 NA
#> SRR1643536     2  0.4857      0.842 0.000 0.668 0.008 NA
#> SRR1643537     2  0.4857      0.842 0.000 0.668 0.008 NA
#> SRR1643538     2  0.4857      0.842 0.000 0.668 0.008 NA
#> SRR1643539     2  0.4741      0.842 0.000 0.668 0.004 NA
#> SRR1643540     2  0.4741      0.842 0.000 0.668 0.004 NA
#> SRR1643541     2  0.4741      0.842 0.000 0.668 0.004 NA
#> SRR1643542     2  0.4857      0.842 0.000 0.668 0.008 NA
#> SRR1643543     2  0.4857      0.842 0.000 0.668 0.008 NA
#> SRR1643544     2  0.4857      0.842 0.000 0.668 0.008 NA
#> SRR1643514     2  0.4204      0.877 0.000 0.788 0.020 NA
#> SRR1643515     2  0.4204      0.877 0.000 0.788 0.020 NA
#> SRR1643516     2  0.4204      0.877 0.000 0.788 0.020 NA
#> SRR1643517     2  0.4204      0.877 0.000 0.788 0.020 NA
#> SRR1643518     2  0.4204      0.877 0.000 0.788 0.020 NA
#> SRR1643519     2  0.4204      0.877 0.000 0.788 0.020 NA
#> SRR1643520     2  0.4204      0.877 0.000 0.788 0.020 NA
#> SRR1643521     2  0.4204      0.877 0.000 0.788 0.020 NA
#> SRR1643522     2  0.4204      0.877 0.000 0.788 0.020 NA
#> SRR1643523     2  0.4204      0.877 0.000 0.788 0.020 NA
#> SRR1643524     2  0.4204      0.877 0.000 0.788 0.020 NA
#> SRR1643525     2  0.4204      0.877 0.000 0.788 0.020 NA
#> SRR1643526     2  0.4204      0.877 0.000 0.788 0.020 NA
#> SRR1643527     2  0.4204      0.877 0.000 0.788 0.020 NA
#> SRR1643528     2  0.4204      0.877 0.000 0.788 0.020 NA
#> SRR1643529     2  0.4204      0.877 0.000 0.788 0.020 NA
#> SRR1643530     2  0.4204      0.877 0.000 0.788 0.020 NA
#> SRR1643545     2  0.2227      0.883 0.000 0.928 0.036 NA
#> SRR1643546     2  0.2227      0.883 0.000 0.928 0.036 NA
#> SRR1643547     2  0.2227      0.883 0.000 0.928 0.036 NA
#> SRR1643548     2  0.2227      0.883 0.000 0.928 0.036 NA
#> SRR1643549     2  0.2227      0.883 0.000 0.928 0.036 NA
#> SRR1643550     2  0.2227      0.883 0.000 0.928 0.036 NA
#> SRR1643551     2  0.2227      0.883 0.000 0.928 0.036 NA
#> SRR1643552     2  0.2227      0.883 0.000 0.928 0.036 NA
#> SRR1643553     2  0.2227      0.883 0.000 0.928 0.036 NA
#> SRR1643554     2  0.2227      0.883 0.000 0.928 0.036 NA
#> SRR1643555     2  0.2227      0.883 0.000 0.928 0.036 NA
#> SRR1643556     2  0.2227      0.883 0.000 0.928 0.036 NA
#> SRR1643558     2  0.2227      0.883 0.000 0.928 0.036 NA
#> SRR1643559     2  0.4364      0.872 0.000 0.764 0.016 NA
#> SRR1643560     2  0.4364      0.872 0.000 0.764 0.016 NA
#> SRR1643561     2  0.4364      0.872 0.000 0.764 0.016 NA
#> SRR1643562     2  0.4364      0.872 0.000 0.764 0.016 NA
#> SRR1643563     2  0.4364      0.872 0.000 0.764 0.016 NA
#> SRR1643564     2  0.4364      0.872 0.000 0.764 0.016 NA
#> SRR1643565     2  0.4364      0.872 0.000 0.764 0.016 NA
#> SRR1643566     2  0.4364      0.872 0.000 0.764 0.016 NA
#> SRR1643567     2  0.4364      0.872 0.000 0.764 0.016 NA
#> SRR1643568     2  0.4364      0.872 0.000 0.764 0.016 NA
#> SRR1643569     2  0.4364      0.872 0.000 0.764 0.016 NA
#> SRR1643570     2  0.4364      0.872 0.000 0.764 0.016 NA
#> SRR1643571     2  0.4364      0.872 0.000 0.764 0.016 NA
#> SRR1643572     2  0.4364      0.872 0.000 0.764 0.016 NA

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1    p2    p3    p4 p5
#> SRR1643167     1  0.4705      0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643168     1  0.4705      0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643169     1  0.4705      0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643170     1  0.4705      0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643171     1  0.4705      0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643172     1  0.4705      0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643173     1  0.4705      0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643174     1  0.4705      0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643175     1  0.4649      0.575 0.708 0.000 0.004 0.044 NA
#> SRR1643176     1  0.4649      0.575 0.708 0.000 0.004 0.044 NA
#> SRR1643177     1  0.4649      0.575 0.708 0.000 0.004 0.044 NA
#> SRR1643178     1  0.4649      0.575 0.708 0.000 0.004 0.044 NA
#> SRR1643180     1  0.4750      0.568 0.692 0.000 0.004 0.044 NA
#> SRR1643181     1  0.4750      0.568 0.692 0.000 0.004 0.044 NA
#> SRR1643182     1  0.4750      0.568 0.692 0.000 0.004 0.044 NA
#> SRR1643183     1  0.4750      0.568 0.692 0.000 0.004 0.044 NA
#> SRR1643184     1  0.4750      0.568 0.692 0.000 0.004 0.044 NA
#> SRR1643185     1  0.4750      0.568 0.692 0.000 0.004 0.044 NA
#> SRR1643186     1  0.4750      0.568 0.692 0.000 0.004 0.044 NA
#> SRR1643187     1  0.4793      0.567 0.692 0.000 0.004 0.048 NA
#> SRR1643188     1  0.4793      0.567 0.692 0.000 0.004 0.048 NA
#> SRR1643189     1  0.4793      0.567 0.692 0.000 0.004 0.048 NA
#> SRR1643190     1  0.4793      0.567 0.692 0.000 0.004 0.048 NA
#> SRR1643191     1  0.4705      0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643192     1  0.4705      0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643193     1  0.4750      0.567 0.692 0.000 0.004 0.044 NA
#> SRR1643194     1  0.4750      0.567 0.692 0.000 0.004 0.044 NA
#> SRR1643195     1  0.6581      0.330 0.500 0.000 0.004 0.232 NA
#> SRR1643196     1  0.6581      0.330 0.500 0.000 0.004 0.232 NA
#> SRR1643197     1  0.4726      0.569 0.696 0.000 0.004 0.044 NA
#> SRR1643198     1  0.4726      0.569 0.696 0.000 0.004 0.044 NA
#> SRR1643199     1  0.4705      0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643200     1  0.4705      0.567 0.692 0.000 0.004 0.040 NA
#> SRR1643201     1  0.4793      0.567 0.692 0.000 0.004 0.048 NA
#> SRR1643202     1  0.4793      0.567 0.692 0.000 0.004 0.048 NA
#> SRR1643203     1  0.4793      0.567 0.692 0.000 0.004 0.048 NA
#> SRR1643204     1  0.4793      0.567 0.692 0.000 0.004 0.048 NA
#> SRR1643205     3  0.1717      0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643206     3  0.1717      0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643207     3  0.1717      0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643208     3  0.1717      0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643209     3  0.2173      0.983 0.052 0.000 0.920 0.016 NA
#> SRR1643210     3  0.2173      0.983 0.052 0.000 0.920 0.016 NA
#> SRR1643211     3  0.1717      0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643212     3  0.1717      0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643213     3  0.1717      0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643214     3  0.1717      0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643215     3  0.2173      0.983 0.052 0.000 0.920 0.016 NA
#> SRR1643216     3  0.2173      0.983 0.052 0.000 0.920 0.016 NA
#> SRR1643217     3  0.2173      0.983 0.052 0.000 0.920 0.016 NA
#> SRR1643218     3  0.2173      0.983 0.052 0.000 0.920 0.016 NA
#> SRR1643219     3  0.2173      0.983 0.052 0.000 0.920 0.016 NA
#> SRR1643220     3  0.2173      0.983 0.052 0.000 0.920 0.016 NA
#> SRR1643221     3  0.1430      0.987 0.052 0.000 0.944 0.004 NA
#> SRR1643222     3  0.1430      0.987 0.052 0.000 0.944 0.004 NA
#> SRR1643223     3  0.1717      0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643224     3  0.1717      0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643225     3  0.1717      0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643226     3  0.1717      0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643227     3  0.1591      0.987 0.052 0.000 0.940 0.004 NA
#> SRR1643228     3  0.1591      0.987 0.052 0.000 0.940 0.004 NA
#> SRR1643229     3  0.1591      0.987 0.052 0.000 0.940 0.004 NA
#> SRR1643230     3  0.1717      0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643231     3  0.3241      0.968 0.052 0.000 0.872 0.040 NA
#> SRR1643232     3  0.1717      0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643233     3  0.2917      0.974 0.052 0.000 0.888 0.032 NA
#> SRR1643234     3  0.2917      0.974 0.052 0.000 0.888 0.032 NA
#> SRR1643235     3  0.1717      0.987 0.052 0.000 0.936 0.008 NA
#> SRR1643236     3  0.1591      0.987 0.052 0.000 0.940 0.004 NA
#> SRR1643237     3  0.1591      0.987 0.052 0.000 0.940 0.004 NA
#> SRR1643238     3  0.1557      0.987 0.052 0.000 0.940 0.008 NA
#> SRR1643239     3  0.1557      0.987 0.052 0.000 0.940 0.008 NA
#> SRR1643240     3  0.1557      0.987 0.052 0.000 0.940 0.008 NA
#> SRR1643241     3  0.1557      0.987 0.052 0.000 0.940 0.008 NA
#> SRR1643242     3  0.3394      0.964 0.052 0.000 0.864 0.040 NA
#> SRR1643243     3  0.2897      0.975 0.052 0.000 0.888 0.040 NA
#> SRR1643245     3  0.2897      0.975 0.052 0.000 0.888 0.040 NA
#> SRR1643246     3  0.2897      0.975 0.052 0.000 0.888 0.040 NA
#> SRR1643247     3  0.2897      0.975 0.052 0.000 0.888 0.040 NA
#> SRR1643248     3  0.1830      0.986 0.052 0.000 0.932 0.012 NA
#> SRR1643249     3  0.3806      0.950 0.056 0.000 0.840 0.040 NA
#> SRR1643250     4  0.4555      0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643251     4  0.4555      0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643252     4  0.4555      0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643253     4  0.4555      0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643254     4  0.4555      0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643255     4  0.4555      0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643256     4  0.4555      0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643257     4  0.4555      0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643258     4  0.4555      0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643259     4  0.4555      0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643260     4  0.4555      0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643261     4  0.4555      0.823 0.472 0.000 0.000 0.520 NA
#> SRR1643262     4  0.4552      0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643263     4  0.4552      0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643264     4  0.4552      0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643266     4  0.4552      0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643267     4  0.4552      0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643268     4  0.4552      0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643269     4  0.4552      0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643270     4  0.4552      0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643271     4  0.4552      0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643272     4  0.4552      0.826 0.468 0.000 0.000 0.524 NA
#> SRR1643273     1  0.4780      0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643274     1  0.4780      0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643275     1  0.4780      0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643276     1  0.4780      0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643277     1  0.4780      0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643278     1  0.4780      0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643279     1  0.4780      0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643280     1  0.4780      0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643281     1  0.4780      0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643282     1  0.4780      0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643283     1  0.4780      0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643284     1  0.4780      0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643285     1  0.4780      0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643286     1  0.4780      0.241 0.692 0.000 0.000 0.248 NA
#> SRR1643287     4  0.5535      0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643288     4  0.5535      0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643289     4  0.5535      0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643290     4  0.5535      0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643291     4  0.5535      0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643292     4  0.5535      0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643293     4  0.5535      0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643294     4  0.5535      0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643295     4  0.5535      0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643296     4  0.5535      0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643297     4  0.5535      0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643298     4  0.5535      0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643299     4  0.5535      0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643300     4  0.5535      0.764 0.392 0.000 0.000 0.536 NA
#> SRR1643301     1  0.4243      0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643302     1  0.4243      0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643303     1  0.4243      0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643304     1  0.4243      0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643305     1  0.4243      0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643306     1  0.4243      0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643307     1  0.4243      0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643308     1  0.4243      0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643309     1  0.4243      0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643310     1  0.4243      0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643311     1  0.4243      0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643312     1  0.4243      0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643313     1  0.4243      0.148 0.712 0.000 0.000 0.264 NA
#> SRR1643314     1  0.2464      0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643315     1  0.2464      0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643316     1  0.2464      0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643317     1  0.2464      0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643318     1  0.2464      0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643319     1  0.2464      0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643320     1  0.2464      0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643321     1  0.2464      0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643322     1  0.2464      0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643323     1  0.2464      0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643324     1  0.2464      0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643325     1  0.2464      0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643326     1  0.2464      0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643327     1  0.2464      0.587 0.888 0.000 0.000 0.096 NA
#> SRR1643328     1  0.0510      0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643329     1  0.0510      0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643330     1  0.0510      0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643331     1  0.0510      0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643332     1  0.0510      0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643333     1  0.0510      0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643334     1  0.0510      0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643335     1  0.0510      0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643336     1  0.0510      0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643337     1  0.0510      0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643338     1  0.0510      0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643339     1  0.0510      0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643340     1  0.0510      0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643341     1  0.0510      0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643342     1  0.0510      0.666 0.984 0.000 0.000 0.000 NA
#> SRR1643343     1  0.4787      0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643344     1  0.4787      0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643345     1  0.4787      0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643346     1  0.4787      0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643347     1  0.4787      0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643348     1  0.4787      0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643349     1  0.4787      0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643350     1  0.4787      0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643351     1  0.4787      0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643352     1  0.4787      0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643353     1  0.4787      0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643354     1  0.4787      0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643355     1  0.4787      0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643356     1  0.4787      0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643357     1  0.4787      0.380 0.712 0.000 0.000 0.208 NA
#> SRR1643358     4  0.4894      0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643359     4  0.4894      0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643360     4  0.4894      0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643361     4  0.4894      0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643362     4  0.4894      0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643363     4  0.4894      0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643364     4  0.4894      0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643365     4  0.4894      0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643366     4  0.4894      0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643367     4  0.4894      0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643368     4  0.4894      0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643369     4  0.4894      0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643370     4  0.4894      0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643371     4  0.4894      0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643372     4  0.4894      0.835 0.456 0.000 0.000 0.520 NA
#> SRR1643373     4  0.4890      0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643374     4  0.4890      0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643375     4  0.4890      0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643376     4  0.4890      0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643377     4  0.4890      0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643378     4  0.4890      0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643379     4  0.4890      0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643380     4  0.4890      0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643381     4  0.4890      0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643382     4  0.4890      0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643383     4  0.4890      0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643384     4  0.4890      0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643385     4  0.4890      0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643386     4  0.4890      0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643387     4  0.4890      0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643388     4  0.4890      0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643389     4  0.4890      0.836 0.452 0.000 0.000 0.524 NA
#> SRR1643390     1  0.0703      0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643391     1  0.0703      0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643392     1  0.0703      0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643393     1  0.0703      0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643394     1  0.0703      0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643395     1  0.0703      0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643396     1  0.0703      0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643397     1  0.0703      0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643398     1  0.0703      0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643399     1  0.0703      0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643400     1  0.0703      0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643401     1  0.0703      0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643402     1  0.0703      0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643403     1  0.0703      0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643404     1  0.0703      0.665 0.976 0.000 0.000 0.000 NA
#> SRR1643405     1  0.1121      0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643406     1  0.1121      0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643407     1  0.1121      0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643408     1  0.1121      0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643409     1  0.1121      0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643410     1  0.1121      0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643411     1  0.1121      0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643412     1  0.1121      0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643413     1  0.1121      0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643414     1  0.1121      0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643415     1  0.1121      0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643416     1  0.1121      0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643417     1  0.1121      0.660 0.956 0.000 0.000 0.000 NA
#> SRR1643418     4  0.5422      0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643419     4  0.5422      0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643420     4  0.5422      0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643421     4  0.5422      0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643422     4  0.5422      0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643423     4  0.5422      0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643424     4  0.5422      0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643425     4  0.5422      0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643426     4  0.5422      0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643427     4  0.5422      0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643428     4  0.5422      0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643429     4  0.5422      0.768 0.348 0.000 0.000 0.580 NA
#> SRR1643430     4  0.5370      0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643431     4  0.5370      0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643432     4  0.5370      0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643433     4  0.5370      0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643434     4  0.5370      0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643435     4  0.5370      0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643436     4  0.5370      0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643437     4  0.5370      0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643438     4  0.5370      0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643439     4  0.5370      0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643440     4  0.5370      0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643441     4  0.5370      0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643442     4  0.5370      0.768 0.348 0.000 0.000 0.584 NA
#> SRR1643443     2  0.3242      0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643444     2  0.3242      0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643445     2  0.3242      0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643446     2  0.3242      0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643447     2  0.3242      0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643448     2  0.3242      0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643449     2  0.3242      0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643450     2  0.3242      0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643451     2  0.3242      0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643452     2  0.3242      0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643453     2  0.3242      0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643454     2  0.3242      0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643455     2  0.3242      0.780 0.000 0.852 0.000 0.076 NA
#> SRR1643456     2  0.4565      0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643457     2  0.4565      0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643458     2  0.4565      0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643459     2  0.4565      0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643460     2  0.4565      0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643461     2  0.4565      0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643462     2  0.4565      0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643463     2  0.4565      0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643464     2  0.4565      0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643466     2  0.4565      0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643467     2  0.4565      0.824 0.000 0.632 0.008 0.008 NA
#> SRR1643468     2  0.4954      0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643469     2  0.4954      0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643470     2  0.4954      0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643471     2  0.4954      0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643472     2  0.4954      0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643473     2  0.4954      0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643474     2  0.4954      0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643475     2  0.4954      0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643477     2  0.4954      0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643478     2  0.4954      0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643479     2  0.4954      0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643480     2  0.4954      0.822 0.000 0.616 0.012 0.020 NA
#> SRR1643481     2  0.4580      0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643482     2  0.4580      0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643483     2  0.4580      0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643484     2  0.4580      0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643485     2  0.4580      0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643486     2  0.4580      0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643487     2  0.4580      0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643488     2  0.4580      0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643489     2  0.4580      0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643490     2  0.4580      0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643491     2  0.4580      0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643492     2  0.4580      0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643493     2  0.4580      0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643494     2  0.4580      0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643495     2  0.4580      0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643496     2  0.4580      0.824 0.000 0.628 0.008 0.008 NA
#> SRR1643497     2  0.5304      0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643498     2  0.5304      0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643499     2  0.5304      0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643500     2  0.5304      0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643501     2  0.5304      0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643502     2  0.5304      0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643503     2  0.5304      0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643504     2  0.5304      0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643505     2  0.5406      0.808 0.000 0.592 0.008 0.052 NA
#> SRR1643506     2  0.5304      0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643507     2  0.5304      0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643508     2  0.5304      0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643509     2  0.5304      0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643510     2  0.5304      0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643511     2  0.5304      0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643512     2  0.5304      0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643513     2  0.5304      0.807 0.000 0.592 0.004 0.052 NA
#> SRR1643531     2  0.2321      0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643532     2  0.2321      0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643533     2  0.2321      0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643534     2  0.2321      0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643535     2  0.2321      0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643536     2  0.2321      0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643537     2  0.2321      0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643538     2  0.2321      0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643539     2  0.2321      0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643540     2  0.2321      0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643541     2  0.2321      0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643542     2  0.2321      0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643543     2  0.2321      0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643544     2  0.2321      0.780 0.000 0.912 0.008 0.056 NA
#> SRR1643514     2  0.2568      0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643515     2  0.2568      0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643516     2  0.2568      0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643517     2  0.2568      0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643518     2  0.2568      0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643519     2  0.2568      0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643520     2  0.2568      0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643521     2  0.2568      0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643522     2  0.2568      0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643523     2  0.2568      0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643524     2  0.2568      0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643525     2  0.2568      0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643526     2  0.2568      0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643527     2  0.2568      0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643528     2  0.2568      0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643529     2  0.2568      0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643530     2  0.2568      0.809 0.000 0.900 0.012 0.024 NA
#> SRR1643545     2  0.4752      0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643546     2  0.4752      0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643547     2  0.4752      0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643548     2  0.4752      0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643549     2  0.4752      0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643550     2  0.4752      0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643551     2  0.4752      0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643552     2  0.4752      0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643553     2  0.4752      0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643554     2  0.4752      0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643555     2  0.4752      0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643556     2  0.4752      0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643558     2  0.4752      0.827 0.000 0.648 0.000 0.036 NA
#> SRR1643559     2  0.0613      0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643560     2  0.0613      0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643561     2  0.0613      0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643562     2  0.0613      0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643563     2  0.0613      0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643564     2  0.0613      0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643565     2  0.0613      0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643566     2  0.0613      0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643567     2  0.0613      0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643568     2  0.0613      0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643569     2  0.0613      0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643570     2  0.0613      0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643571     2  0.0613      0.797 0.000 0.984 0.004 0.008 NA
#> SRR1643572     2  0.0613      0.797 0.000 0.984 0.004 0.008 NA

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2    p3    p4    p5    p6
#> SRR1643167     1  0.4357     -0.405 0.560 0.000 0.000 0.008 0.012 0.420
#> SRR1643168     1  0.4357     -0.405 0.560 0.000 0.000 0.008 0.012 0.420
#> SRR1643169     1  0.4357     -0.405 0.560 0.000 0.000 0.008 0.012 0.420
#> SRR1643170     1  0.4357     -0.405 0.560 0.000 0.000 0.008 0.012 0.420
#> SRR1643171     1  0.4357     -0.405 0.560 0.000 0.000 0.012 0.008 0.420
#> SRR1643172     1  0.4357     -0.405 0.560 0.000 0.000 0.012 0.008 0.420
#> SRR1643173     1  0.4357     -0.405 0.560 0.000 0.000 0.012 0.008 0.420
#> SRR1643174     1  0.4357     -0.405 0.560 0.000 0.000 0.012 0.008 0.420
#> SRR1643175     1  0.4546     -0.406 0.572 0.000 0.000 0.008 0.024 0.396
#> SRR1643176     1  0.4546     -0.406 0.572 0.000 0.000 0.008 0.024 0.396
#> SRR1643177     1  0.4546     -0.406 0.572 0.000 0.000 0.008 0.024 0.396
#> SRR1643178     1  0.4546     -0.406 0.572 0.000 0.000 0.008 0.024 0.396
#> SRR1643180     1  0.4579     -0.406 0.560 0.000 0.008 0.012 0.008 0.412
#> SRR1643181     1  0.4579     -0.406 0.560 0.000 0.008 0.012 0.008 0.412
#> SRR1643182     1  0.4579     -0.406 0.560 0.000 0.008 0.012 0.008 0.412
#> SRR1643183     1  0.4579     -0.406 0.560 0.000 0.008 0.012 0.008 0.412
#> SRR1643184     1  0.4579     -0.406 0.560 0.000 0.008 0.012 0.008 0.412
#> SRR1643185     1  0.4579     -0.406 0.560 0.000 0.008 0.012 0.008 0.412
#> SRR1643186     1  0.4579     -0.406 0.560 0.000 0.008 0.012 0.008 0.412
#> SRR1643187     1  0.4659     -0.415 0.556 0.000 0.000 0.012 0.024 0.408
#> SRR1643188     1  0.4659     -0.415 0.556 0.000 0.000 0.012 0.024 0.408
#> SRR1643189     1  0.4659     -0.415 0.556 0.000 0.000 0.012 0.024 0.408
#> SRR1643190     1  0.4659     -0.415 0.556 0.000 0.000 0.012 0.024 0.408
#> SRR1643191     1  0.4433     -0.410 0.560 0.000 0.000 0.008 0.016 0.416
#> SRR1643192     1  0.4433     -0.410 0.560 0.000 0.000 0.008 0.016 0.416
#> SRR1643193     1  0.4280     -0.412 0.556 0.000 0.000 0.008 0.008 0.428
#> SRR1643194     1  0.4280     -0.412 0.556 0.000 0.000 0.008 0.008 0.428
#> SRR1643195     6  0.6402      1.000 0.368 0.000 0.000 0.188 0.028 0.416
#> SRR1643196     6  0.6402      1.000 0.368 0.000 0.000 0.188 0.028 0.416
#> SRR1643197     1  0.4561     -0.408 0.564 0.000 0.000 0.008 0.024 0.404
#> SRR1643198     1  0.4561     -0.408 0.564 0.000 0.000 0.008 0.024 0.404
#> SRR1643199     1  0.4364     -0.410 0.556 0.000 0.000 0.008 0.012 0.424
#> SRR1643200     1  0.4364     -0.410 0.556 0.000 0.000 0.008 0.012 0.424
#> SRR1643201     1  0.4582     -0.421 0.552 0.000 0.000 0.008 0.024 0.416
#> SRR1643202     1  0.4582     -0.421 0.552 0.000 0.000 0.008 0.024 0.416
#> SRR1643203     1  0.4659     -0.415 0.556 0.000 0.000 0.012 0.024 0.408
#> SRR1643204     1  0.4659     -0.415 0.556 0.000 0.000 0.012 0.024 0.408
#> SRR1643205     3  0.1542      0.968 0.052 0.000 0.936 0.004 0.008 0.000
#> SRR1643206     3  0.1542      0.968 0.052 0.000 0.936 0.004 0.008 0.000
#> SRR1643207     3  0.1542      0.968 0.052 0.000 0.936 0.004 0.008 0.000
#> SRR1643208     3  0.1542      0.968 0.052 0.000 0.936 0.004 0.008 0.000
#> SRR1643209     3  0.2693      0.965 0.052 0.000 0.884 0.000 0.028 0.036
#> SRR1643210     3  0.2693      0.965 0.052 0.000 0.884 0.000 0.028 0.036
#> SRR1643211     3  0.1429      0.969 0.052 0.000 0.940 0.004 0.004 0.000
#> SRR1643212     3  0.1429      0.969 0.052 0.000 0.940 0.004 0.004 0.000
#> SRR1643213     3  0.1429      0.969 0.052 0.000 0.940 0.004 0.004 0.000
#> SRR1643214     3  0.1429      0.969 0.052 0.000 0.940 0.004 0.004 0.000
#> SRR1643215     3  0.2831      0.964 0.052 0.000 0.876 0.000 0.028 0.044
#> SRR1643216     3  0.2831      0.964 0.052 0.000 0.876 0.000 0.028 0.044
#> SRR1643217     3  0.2831      0.964 0.052 0.000 0.876 0.000 0.028 0.044
#> SRR1643218     3  0.2831      0.964 0.052 0.000 0.876 0.000 0.028 0.044
#> SRR1643219     3  0.2831      0.964 0.052 0.000 0.876 0.000 0.028 0.044
#> SRR1643220     3  0.2831      0.964 0.052 0.000 0.876 0.000 0.028 0.044
#> SRR1643221     3  0.2082      0.971 0.052 0.000 0.916 0.004 0.008 0.020
#> SRR1643222     3  0.2082      0.971 0.052 0.000 0.916 0.004 0.008 0.020
#> SRR1643223     3  0.2014      0.968 0.052 0.000 0.920 0.012 0.008 0.008
#> SRR1643224     3  0.2014      0.968 0.052 0.000 0.920 0.012 0.008 0.008
#> SRR1643225     3  0.2014      0.968 0.052 0.000 0.920 0.012 0.008 0.008
#> SRR1643226     3  0.2014      0.968 0.052 0.000 0.920 0.012 0.008 0.008
#> SRR1643227     3  0.2195      0.967 0.052 0.000 0.912 0.008 0.008 0.020
#> SRR1643228     3  0.2195      0.967 0.052 0.000 0.912 0.008 0.008 0.020
#> SRR1643229     3  0.1994      0.969 0.052 0.000 0.920 0.004 0.008 0.016
#> SRR1643230     3  0.1799      0.968 0.052 0.000 0.928 0.008 0.008 0.004
#> SRR1643231     3  0.3887      0.948 0.052 0.000 0.820 0.012 0.044 0.072
#> SRR1643232     3  0.1542      0.968 0.052 0.000 0.936 0.004 0.008 0.000
#> SRR1643233     3  0.3596      0.951 0.052 0.000 0.832 0.004 0.036 0.076
#> SRR1643234     3  0.3596      0.951 0.052 0.000 0.832 0.004 0.036 0.076
#> SRR1643235     3  0.1542      0.968 0.052 0.000 0.936 0.004 0.008 0.000
#> SRR1643236     3  0.1429      0.969 0.052 0.000 0.940 0.004 0.004 0.000
#> SRR1643237     3  0.1429      0.969 0.052 0.000 0.940 0.004 0.004 0.000
#> SRR1643238     3  0.2266      0.969 0.052 0.000 0.908 0.004 0.012 0.024
#> SRR1643239     3  0.2266      0.969 0.052 0.000 0.908 0.004 0.012 0.024
#> SRR1643240     3  0.2266      0.969 0.052 0.000 0.908 0.004 0.012 0.024
#> SRR1643241     3  0.2266      0.969 0.052 0.000 0.908 0.004 0.012 0.024
#> SRR1643242     3  0.3959      0.943 0.052 0.000 0.812 0.008 0.048 0.080
#> SRR1643243     3  0.3452      0.956 0.052 0.000 0.844 0.008 0.028 0.068
#> SRR1643245     3  0.3452      0.956 0.052 0.000 0.844 0.008 0.028 0.068
#> SRR1643246     3  0.3452      0.956 0.052 0.000 0.844 0.008 0.028 0.068
#> SRR1643247     3  0.3452      0.956 0.052 0.000 0.844 0.008 0.028 0.068
#> SRR1643248     3  0.2827      0.968 0.052 0.000 0.880 0.004 0.024 0.040
#> SRR1643249     3  0.4108      0.936 0.052 0.000 0.800 0.008 0.048 0.092
#> SRR1643250     4  0.4519      0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643251     4  0.4519      0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643252     4  0.4519      0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643253     4  0.4519      0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643254     4  0.4519      0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643255     4  0.4519      0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643256     4  0.4519      0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643257     4  0.4519      0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643258     4  0.4519      0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643259     4  0.4519      0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643260     4  0.4519      0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643261     4  0.4519      0.717 0.384 0.000 0.000 0.584 0.024 0.008
#> SRR1643262     4  0.4436      0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643263     4  0.4436      0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643264     4  0.4436      0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643266     4  0.4436      0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643267     4  0.4436      0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643268     4  0.4436      0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643269     4  0.4436      0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643270     4  0.4436      0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643271     4  0.4436      0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643272     4  0.4436      0.722 0.380 0.000 0.000 0.592 0.020 0.008
#> SRR1643273     1  0.5724      0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643274     1  0.5724      0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643275     1  0.5724      0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643276     1  0.5724      0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643277     1  0.5724      0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643278     1  0.5724      0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643279     1  0.5724      0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643280     1  0.5724      0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643281     1  0.5724      0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643282     1  0.5724      0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643283     1  0.5724      0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643284     1  0.5724      0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643285     1  0.5724      0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643286     1  0.5724      0.244 0.628 0.000 0.000 0.204 0.108 0.060
#> SRR1643287     4  0.6744      0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643288     4  0.6744      0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643289     4  0.6744      0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643290     4  0.6744      0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643291     4  0.6744      0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643292     4  0.6744      0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643293     4  0.6744      0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643294     4  0.6744      0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643295     4  0.6744      0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643296     4  0.6744      0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643297     4  0.6744      0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643298     4  0.6744      0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643299     4  0.6744      0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643300     4  0.6744      0.545 0.324 0.000 0.000 0.444 0.160 0.072
#> SRR1643301     1  0.4643      0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643302     1  0.4643      0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643303     1  0.4643      0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643304     1  0.4643      0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643305     1  0.4643      0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643306     1  0.4643      0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643307     1  0.4643      0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643308     1  0.4643      0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643309     1  0.4643      0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643310     1  0.4643      0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643311     1  0.4643      0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643312     1  0.4643      0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643313     1  0.4643      0.186 0.660 0.000 0.000 0.284 0.028 0.028
#> SRR1643314     1  0.2894      0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643315     1  0.2894      0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643316     1  0.2894      0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643317     1  0.2894      0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643318     1  0.2894      0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643319     1  0.2842      0.460 0.868 0.000 0.000 0.084 0.020 0.028
#> SRR1643320     1  0.2894      0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643321     1  0.2894      0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643322     1  0.2894      0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643323     1  0.2894      0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643324     1  0.2894      0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643325     1  0.2894      0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643326     1  0.2894      0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643327     1  0.2894      0.459 0.864 0.000 0.000 0.088 0.020 0.028
#> SRR1643328     1  0.0713      0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643329     1  0.0713      0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643330     1  0.0713      0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643331     1  0.0713      0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643332     1  0.0713      0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643333     1  0.0713      0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643334     1  0.0713      0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643335     1  0.0713      0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643336     1  0.0713      0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643337     1  0.0713      0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643338     1  0.0713      0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643339     1  0.0713      0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643340     1  0.0713      0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643341     1  0.0713      0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643342     1  0.0713      0.474 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643343     1  0.5312      0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643344     1  0.5312      0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643345     1  0.5312      0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643346     1  0.5312      0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643347     1  0.5312      0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643348     1  0.5312      0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643349     1  0.5312      0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643350     1  0.5312      0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643351     1  0.5312      0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643352     1  0.5312      0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643353     1  0.5312      0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643354     1  0.5312      0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643355     1  0.5312      0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643356     1  0.5312      0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643357     1  0.5312      0.353 0.688 0.000 0.000 0.144 0.092 0.076
#> SRR1643358     4  0.4800      0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643359     4  0.4800      0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643360     4  0.4800      0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643361     4  0.4800      0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643362     4  0.4800      0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643363     4  0.4800      0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643364     4  0.4800      0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643365     4  0.4800      0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643366     4  0.4800      0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643367     4  0.4800      0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643368     4  0.4800      0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643369     4  0.4800      0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643370     4  0.4800      0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643371     4  0.4800      0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643372     4  0.4800      0.727 0.380 0.000 0.000 0.572 0.012 0.036
#> SRR1643373     4  0.4882      0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643374     4  0.4882      0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643375     4  0.4882      0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643376     4  0.4882      0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643377     4  0.4882      0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643378     4  0.4882      0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643379     4  0.4882      0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643380     4  0.4882      0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643381     4  0.4873      0.727 0.376 0.000 0.000 0.572 0.016 0.036
#> SRR1643382     4  0.4882      0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643383     4  0.4882      0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643384     4  0.4882      0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643385     4  0.4882      0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643386     4  0.4882      0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643387     4  0.4882      0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643388     4  0.4882      0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643389     4  0.4882      0.727 0.380 0.000 0.000 0.568 0.016 0.036
#> SRR1643390     1  0.1049      0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643391     1  0.1049      0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643392     1  0.1049      0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643393     1  0.1049      0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643394     1  0.1049      0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643395     1  0.1049      0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643396     1  0.1049      0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643397     1  0.1049      0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643398     1  0.1049      0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643399     1  0.1049      0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643400     1  0.1049      0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643401     1  0.1049      0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643402     1  0.1049      0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643403     1  0.1049      0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643404     1  0.1049      0.484 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643405     1  0.1624      0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643406     1  0.1624      0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643407     1  0.1624      0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643408     1  0.1624      0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643409     1  0.1624      0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643410     1  0.1624      0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643411     1  0.1624      0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643412     1  0.1624      0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643413     1  0.1624      0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643414     1  0.1624      0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643415     1  0.1624      0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643416     1  0.1624      0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643417     1  0.1624      0.481 0.936 0.000 0.000 0.004 0.020 0.040
#> SRR1643418     4  0.5393      0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643419     4  0.5393      0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643420     4  0.5393      0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643421     4  0.5393      0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643422     4  0.5393      0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643423     4  0.5393      0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643424     4  0.5393      0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643425     4  0.5393      0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643426     4  0.5393      0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643427     4  0.5393      0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643428     4  0.5393      0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643429     4  0.5393      0.572 0.188 0.000 0.000 0.660 0.044 0.108
#> SRR1643430     4  0.5283      0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643431     4  0.5283      0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643432     4  0.5283      0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643433     4  0.5283      0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643434     4  0.5283      0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643435     4  0.5283      0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643436     4  0.5283      0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643437     4  0.5283      0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643438     4  0.5283      0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643439     4  0.5283      0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643440     4  0.5283      0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643441     4  0.5283      0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643442     4  0.5283      0.572 0.188 0.000 0.000 0.672 0.048 0.092
#> SRR1643443     5  0.5365      0.870 0.000 0.428 0.012 0.024 0.504 0.032
#> SRR1643444     5  0.5365      0.870 0.000 0.428 0.012 0.024 0.504 0.032
#> SRR1643445     5  0.5365      0.870 0.000 0.428 0.012 0.024 0.504 0.032
#> SRR1643446     5  0.5344      0.870 0.000 0.428 0.008 0.028 0.504 0.032
#> SRR1643447     5  0.5344      0.870 0.000 0.428 0.008 0.028 0.504 0.032
#> SRR1643448     5  0.5365      0.870 0.000 0.428 0.012 0.024 0.504 0.032
#> SRR1643449     5  0.5365      0.870 0.000 0.428 0.012 0.024 0.504 0.032
#> SRR1643450     5  0.5344      0.870 0.000 0.428 0.008 0.028 0.504 0.032
#> SRR1643451     5  0.5344      0.870 0.000 0.428 0.008 0.028 0.504 0.032
#> SRR1643452     5  0.5365      0.870 0.000 0.428 0.012 0.024 0.504 0.032
#> SRR1643453     5  0.5344      0.870 0.000 0.428 0.008 0.028 0.504 0.032
#> SRR1643454     5  0.5344      0.870 0.000 0.428 0.008 0.028 0.504 0.032
#> SRR1643455     5  0.5344      0.870 0.000 0.428 0.008 0.028 0.504 0.032
#> SRR1643456     2  0.0405      0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643457     2  0.0405      0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643458     2  0.0405      0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643459     2  0.0405      0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643460     2  0.0405      0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643461     2  0.0405      0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643462     2  0.0405      0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643463     2  0.0405      0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643464     2  0.0405      0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643466     2  0.0405      0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643467     2  0.0405      0.616 0.000 0.988 0.000 0.004 0.000 0.008
#> SRR1643468     2  0.1799      0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643469     2  0.1799      0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643470     2  0.1799      0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643471     2  0.1799      0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643472     2  0.1799      0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643473     2  0.1799      0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643474     2  0.1799      0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643475     2  0.1799      0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643477     2  0.1799      0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643478     2  0.1799      0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643479     2  0.1799      0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643480     2  0.1799      0.606 0.000 0.928 0.008 0.004 0.008 0.052
#> SRR1643481     2  0.0862      0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643482     2  0.0862      0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643483     2  0.0862      0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643484     2  0.0862      0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643485     2  0.0862      0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643486     2  0.0862      0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643487     2  0.0862      0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643488     2  0.0862      0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643489     2  0.0862      0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643490     2  0.0862      0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643491     2  0.0862      0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643492     2  0.0862      0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643493     2  0.0862      0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643494     2  0.0862      0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643495     2  0.0862      0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643496     2  0.0862      0.614 0.000 0.972 0.000 0.008 0.004 0.016
#> SRR1643497     2  0.4342      0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643498     2  0.4342      0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643499     2  0.4342      0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643500     2  0.4342      0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643501     2  0.4342      0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643502     2  0.4342      0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643503     2  0.4342      0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643504     2  0.4342      0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643505     2  0.4522      0.439 0.000 0.752 0.000 0.048 0.132 0.068
#> SRR1643506     2  0.4342      0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643507     2  0.4342      0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643508     2  0.4342      0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643509     2  0.4342      0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643510     2  0.4342      0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643511     2  0.4342      0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643512     2  0.4342      0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643513     2  0.4342      0.450 0.000 0.764 0.000 0.036 0.128 0.072
#> SRR1643531     5  0.5659      0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643532     5  0.5659      0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643533     5  0.5659      0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643534     5  0.5659      0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643535     5  0.5659      0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643536     5  0.5659      0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643537     5  0.5659      0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643538     5  0.5659      0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643539     5  0.5659      0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643540     5  0.5659      0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643541     5  0.5659      0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643542     5  0.5659      0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643543     5  0.5659      0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643544     5  0.5659      0.879 0.000 0.448 0.004 0.044 0.460 0.044
#> SRR1643514     2  0.4982     -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643515     2  0.4982     -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643516     2  0.4982     -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643517     2  0.4982     -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643518     2  0.4982     -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643519     2  0.4982     -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643520     2  0.4982     -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643521     2  0.4982     -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643522     2  0.4982     -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643523     2  0.4982     -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643524     2  0.4982     -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643525     2  0.4982     -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643526     2  0.4982     -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643527     2  0.4982     -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643528     2  0.4982     -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643529     2  0.4982     -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643530     2  0.4982     -0.247 0.000 0.580 0.012 0.016 0.368 0.024
#> SRR1643545     2  0.2821      0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643546     2  0.2821      0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643547     2  0.2821      0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643548     2  0.2821      0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643549     2  0.2821      0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643550     2  0.2821      0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643551     2  0.2821      0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643552     2  0.2821      0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643553     2  0.2821      0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643554     2  0.2821      0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643555     2  0.2821      0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643556     2  0.2821      0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643558     2  0.2821      0.572 0.000 0.880 0.008 0.020 0.064 0.028
#> SRR1643559     2  0.3993     -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643560     2  0.3993     -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643561     2  0.3993     -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643562     2  0.3993     -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643563     2  0.3993     -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643564     2  0.3993     -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643565     2  0.3993     -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643566     2  0.3993     -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643567     2  0.3993     -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643568     2  0.3993     -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643569     2  0.3993     -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643570     2  0.3993     -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643571     2  0.3993     -0.541 0.000 0.520 0.000 0.004 0.476 0.000
#> SRR1643572     2  0.3993     -0.541 0.000 0.520 0.000 0.004 0.476 0.000

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-SD-kmeans-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-SD-kmeans-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-SD-kmeans-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-SD-kmeans-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-SD-kmeans-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-SD-kmeans-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-SD-kmeans-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-SD-kmeans-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-SD-kmeans-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-SD-kmeans-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-SD-kmeans-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-SD-kmeans-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-SD-kmeans-get-signatures-3

get_signatures(res, k = 5)

plot of chunk tab-SD-kmeans-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-SD-kmeans-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-SD-kmeans-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-SD-kmeans-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-SD-kmeans-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)

plot of chunk tab-SD-kmeans-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-SD-kmeans-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk SD-kmeans-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-SD-kmeans-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-SD-kmeans-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-SD-kmeans-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-SD-kmeans-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-SD-kmeans-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk SD-kmeans-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


SD:skmeans*

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["SD", "skmeans"]
# you can also extract it by
# res = res_list["SD:skmeans"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'SD' method.
#>   Subgroups are detected by 'skmeans' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 4.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk SD-skmeans-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk SD-skmeans-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000         0.4350 0.566   0.566
#> 3 3 1.000           0.983       0.988         0.3061 0.874   0.777
#> 4 4 0.943           0.947       0.963         0.2597 0.840   0.637
#> 5 5 0.845           0.884       0.896         0.0605 0.953   0.834
#> 6 6 0.799           0.824       0.840         0.0425 0.974   0.888

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 4
#> attr(,"optional")
#> [1] 2 3

There is also optional best \(k\) = 2 3 that is worth to check.

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1 p2    p3
#> SRR1643167     1  0.1860      0.957 0.948  0 0.052
#> SRR1643168     1  0.1860      0.957 0.948  0 0.052
#> SRR1643169     1  0.1860      0.957 0.948  0 0.052
#> SRR1643170     1  0.1860      0.957 0.948  0 0.052
#> SRR1643171     1  0.2066      0.953 0.940  0 0.060
#> SRR1643172     1  0.2066      0.953 0.940  0 0.060
#> SRR1643173     1  0.2066      0.953 0.940  0 0.060
#> SRR1643174     1  0.2066      0.953 0.940  0 0.060
#> SRR1643175     1  0.0592      0.976 0.988  0 0.012
#> SRR1643176     1  0.0592      0.976 0.988  0 0.012
#> SRR1643177     1  0.0592      0.976 0.988  0 0.012
#> SRR1643178     1  0.0592      0.976 0.988  0 0.012
#> SRR1643180     1  0.2066      0.953 0.940  0 0.060
#> SRR1643181     1  0.2066      0.953 0.940  0 0.060
#> SRR1643182     1  0.2066      0.953 0.940  0 0.060
#> SRR1643183     1  0.2066      0.953 0.940  0 0.060
#> SRR1643184     1  0.2066      0.953 0.940  0 0.060
#> SRR1643185     1  0.2066      0.953 0.940  0 0.060
#> SRR1643186     1  0.2066      0.953 0.940  0 0.060
#> SRR1643187     1  0.0237      0.979 0.996  0 0.004
#> SRR1643188     1  0.0237      0.979 0.996  0 0.004
#> SRR1643189     1  0.0237      0.979 0.996  0 0.004
#> SRR1643190     1  0.0237      0.979 0.996  0 0.004
#> SRR1643191     1  0.2066      0.953 0.940  0 0.060
#> SRR1643192     1  0.2066      0.953 0.940  0 0.060
#> SRR1643193     1  0.0237      0.979 0.996  0 0.004
#> SRR1643194     1  0.0237      0.979 0.996  0 0.004
#> SRR1643195     1  0.0000      0.979 1.000  0 0.000
#> SRR1643196     1  0.0000      0.979 1.000  0 0.000
#> SRR1643197     1  0.1860      0.957 0.948  0 0.052
#> SRR1643198     1  0.1860      0.957 0.948  0 0.052
#> SRR1643199     1  0.1860      0.957 0.948  0 0.052
#> SRR1643200     1  0.1860      0.957 0.948  0 0.052
#> SRR1643201     1  0.0000      0.979 1.000  0 0.000
#> SRR1643202     1  0.0000      0.979 1.000  0 0.000
#> SRR1643203     1  0.1163      0.969 0.972  0 0.028
#> SRR1643204     1  0.1163      0.969 0.972  0 0.028
#> SRR1643205     3  0.0000      1.000 0.000  0 1.000
#> SRR1643206     3  0.0000      1.000 0.000  0 1.000
#> SRR1643207     3  0.0000      1.000 0.000  0 1.000
#> SRR1643208     3  0.0000      1.000 0.000  0 1.000
#> SRR1643209     3  0.0000      1.000 0.000  0 1.000
#> SRR1643210     3  0.0000      1.000 0.000  0 1.000
#> SRR1643211     3  0.0000      1.000 0.000  0 1.000
#> SRR1643212     3  0.0000      1.000 0.000  0 1.000
#> SRR1643213     3  0.0000      1.000 0.000  0 1.000
#> SRR1643214     3  0.0000      1.000 0.000  0 1.000
#> SRR1643215     3  0.0000      1.000 0.000  0 1.000
#> SRR1643216     3  0.0000      1.000 0.000  0 1.000
#> SRR1643217     3  0.0000      1.000 0.000  0 1.000
#> SRR1643218     3  0.0000      1.000 0.000  0 1.000
#> SRR1643219     3  0.0000      1.000 0.000  0 1.000
#> SRR1643220     3  0.0000      1.000 0.000  0 1.000
#> SRR1643221     3  0.0000      1.000 0.000  0 1.000
#> SRR1643222     3  0.0000      1.000 0.000  0 1.000
#> SRR1643223     3  0.0000      1.000 0.000  0 1.000
#> SRR1643224     3  0.0000      1.000 0.000  0 1.000
#> SRR1643225     3  0.0000      1.000 0.000  0 1.000
#> SRR1643226     3  0.0000      1.000 0.000  0 1.000
#> SRR1643227     3  0.0000      1.000 0.000  0 1.000
#> SRR1643228     3  0.0000      1.000 0.000  0 1.000
#> SRR1643229     3  0.0000      1.000 0.000  0 1.000
#> SRR1643230     3  0.0000      1.000 0.000  0 1.000
#> SRR1643231     3  0.0000      1.000 0.000  0 1.000
#> SRR1643232     3  0.0000      1.000 0.000  0 1.000
#> SRR1643233     3  0.0000      1.000 0.000  0 1.000
#> SRR1643234     3  0.0000      1.000 0.000  0 1.000
#> SRR1643235     3  0.0000      1.000 0.000  0 1.000
#> SRR1643236     3  0.0000      1.000 0.000  0 1.000
#> SRR1643237     3  0.0000      1.000 0.000  0 1.000
#> SRR1643238     3  0.0000      1.000 0.000  0 1.000
#> SRR1643239     3  0.0000      1.000 0.000  0 1.000
#> SRR1643240     3  0.0000      1.000 0.000  0 1.000
#> SRR1643241     3  0.0000      1.000 0.000  0 1.000
#> SRR1643242     3  0.0000      1.000 0.000  0 1.000
#> SRR1643243     3  0.0000      1.000 0.000  0 1.000
#> SRR1643245     3  0.0000      1.000 0.000  0 1.000
#> SRR1643246     3  0.0000      1.000 0.000  0 1.000
#> SRR1643247     3  0.0000      1.000 0.000  0 1.000
#> SRR1643248     3  0.0000      1.000 0.000  0 1.000
#> SRR1643249     3  0.0000      1.000 0.000  0 1.000
#> SRR1643250     1  0.0000      0.979 1.000  0 0.000
#> SRR1643251     1  0.0000      0.979 1.000  0 0.000
#> SRR1643252     1  0.0000      0.979 1.000  0 0.000
#> SRR1643253     1  0.0000      0.979 1.000  0 0.000
#> SRR1643254     1  0.0000      0.979 1.000  0 0.000
#> SRR1643255     1  0.0000      0.979 1.000  0 0.000
#> SRR1643256     1  0.0000      0.979 1.000  0 0.000
#> SRR1643257     1  0.0000      0.979 1.000  0 0.000
#> SRR1643258     1  0.0000      0.979 1.000  0 0.000
#> SRR1643259     1  0.0000      0.979 1.000  0 0.000
#> SRR1643260     1  0.0000      0.979 1.000  0 0.000
#> SRR1643261     1  0.0000      0.979 1.000  0 0.000
#> SRR1643262     1  0.0000      0.979 1.000  0 0.000
#> SRR1643263     1  0.0000      0.979 1.000  0 0.000
#> SRR1643264     1  0.0000      0.979 1.000  0 0.000
#> SRR1643266     1  0.0000      0.979 1.000  0 0.000
#> SRR1643267     1  0.0000      0.979 1.000  0 0.000
#> SRR1643268     1  0.0000      0.979 1.000  0 0.000
#> SRR1643269     1  0.0000      0.979 1.000  0 0.000
#> SRR1643270     1  0.0000      0.979 1.000  0 0.000
#> SRR1643271     1  0.0000      0.979 1.000  0 0.000
#> SRR1643272     1  0.0000      0.979 1.000  0 0.000
#> SRR1643273     1  0.0000      0.979 1.000  0 0.000
#> SRR1643274     1  0.0000      0.979 1.000  0 0.000
#> SRR1643275     1  0.0000      0.979 1.000  0 0.000
#> SRR1643276     1  0.0000      0.979 1.000  0 0.000
#> SRR1643277     1  0.0000      0.979 1.000  0 0.000
#> SRR1643278     1  0.0000      0.979 1.000  0 0.000
#> SRR1643279     1  0.0000      0.979 1.000  0 0.000
#> SRR1643280     1  0.0000      0.979 1.000  0 0.000
#> SRR1643281     1  0.0000      0.979 1.000  0 0.000
#> SRR1643282     1  0.0000      0.979 1.000  0 0.000
#> SRR1643283     1  0.0000      0.979 1.000  0 0.000
#> SRR1643284     1  0.0000      0.979 1.000  0 0.000
#> SRR1643285     1  0.0000      0.979 1.000  0 0.000
#> SRR1643286     1  0.0000      0.979 1.000  0 0.000
#> SRR1643287     1  0.0000      0.979 1.000  0 0.000
#> SRR1643288     1  0.0000      0.979 1.000  0 0.000
#> SRR1643289     1  0.0000      0.979 1.000  0 0.000
#> SRR1643290     1  0.0000      0.979 1.000  0 0.000
#> SRR1643291     1  0.0000      0.979 1.000  0 0.000
#> SRR1643292     1  0.0000      0.979 1.000  0 0.000
#> SRR1643293     1  0.0000      0.979 1.000  0 0.000
#> SRR1643294     1  0.0000      0.979 1.000  0 0.000
#> SRR1643295     1  0.0000      0.979 1.000  0 0.000
#> SRR1643296     1  0.0000      0.979 1.000  0 0.000
#> SRR1643297     1  0.0000      0.979 1.000  0 0.000
#> SRR1643298     1  0.0000      0.979 1.000  0 0.000
#> SRR1643299     1  0.0000      0.979 1.000  0 0.000
#> SRR1643300     1  0.0000      0.979 1.000  0 0.000
#> SRR1643301     1  0.0000      0.979 1.000  0 0.000
#> SRR1643302     1  0.0000      0.979 1.000  0 0.000
#> SRR1643303     1  0.0000      0.979 1.000  0 0.000
#> SRR1643304     1  0.0000      0.979 1.000  0 0.000
#> SRR1643305     1  0.0000      0.979 1.000  0 0.000
#> SRR1643306     1  0.0000      0.979 1.000  0 0.000
#> SRR1643307     1  0.0000      0.979 1.000  0 0.000
#> SRR1643308     1  0.0000      0.979 1.000  0 0.000
#> SRR1643309     1  0.0000      0.979 1.000  0 0.000
#> SRR1643310     1  0.0000      0.979 1.000  0 0.000
#> SRR1643311     1  0.0000      0.979 1.000  0 0.000
#> SRR1643312     1  0.0000      0.979 1.000  0 0.000
#> SRR1643313     1  0.0000      0.979 1.000  0 0.000
#> SRR1643314     1  0.0237      0.979 0.996  0 0.004
#> SRR1643315     1  0.0237      0.979 0.996  0 0.004
#> SRR1643316     1  0.0237      0.979 0.996  0 0.004
#> SRR1643317     1  0.0237      0.979 0.996  0 0.004
#> SRR1643318     1  0.0237      0.979 0.996  0 0.004
#> SRR1643319     1  0.0237      0.979 0.996  0 0.004
#> SRR1643320     1  0.0237      0.979 0.996  0 0.004
#> SRR1643321     1  0.0237      0.979 0.996  0 0.004
#> SRR1643322     1  0.0237      0.979 0.996  0 0.004
#> SRR1643323     1  0.0237      0.979 0.996  0 0.004
#> SRR1643324     1  0.0237      0.979 0.996  0 0.004
#> SRR1643325     1  0.0237      0.979 0.996  0 0.004
#> SRR1643326     1  0.0237      0.979 0.996  0 0.004
#> SRR1643327     1  0.0237      0.979 0.996  0 0.004
#> SRR1643328     1  0.2448      0.943 0.924  0 0.076
#> SRR1643329     1  0.2448      0.943 0.924  0 0.076
#> SRR1643330     1  0.2448      0.943 0.924  0 0.076
#> SRR1643331     1  0.2448      0.943 0.924  0 0.076
#> SRR1643332     1  0.2448      0.943 0.924  0 0.076
#> SRR1643333     1  0.2448      0.943 0.924  0 0.076
#> SRR1643334     1  0.2356      0.946 0.928  0 0.072
#> SRR1643335     1  0.2448      0.943 0.924  0 0.076
#> SRR1643336     1  0.2448      0.943 0.924  0 0.076
#> SRR1643337     1  0.2448      0.943 0.924  0 0.076
#> SRR1643338     1  0.2448      0.943 0.924  0 0.076
#> SRR1643339     1  0.2448      0.943 0.924  0 0.076
#> SRR1643340     1  0.2448      0.943 0.924  0 0.076
#> SRR1643341     1  0.2448      0.943 0.924  0 0.076
#> SRR1643342     1  0.2448      0.943 0.924  0 0.076
#> SRR1643343     1  0.0424      0.978 0.992  0 0.008
#> SRR1643344     1  0.0424      0.978 0.992  0 0.008
#> SRR1643345     1  0.0424      0.978 0.992  0 0.008
#> SRR1643346     1  0.0424      0.978 0.992  0 0.008
#> SRR1643347     1  0.0424      0.978 0.992  0 0.008
#> SRR1643348     1  0.0424      0.978 0.992  0 0.008
#> SRR1643349     1  0.0424      0.978 0.992  0 0.008
#> SRR1643350     1  0.0424      0.978 0.992  0 0.008
#> SRR1643351     1  0.0424      0.978 0.992  0 0.008
#> SRR1643352     1  0.0424      0.978 0.992  0 0.008
#> SRR1643353     1  0.0424      0.978 0.992  0 0.008
#> SRR1643354     1  0.0424      0.978 0.992  0 0.008
#> SRR1643355     1  0.0424      0.978 0.992  0 0.008
#> SRR1643356     1  0.0424      0.978 0.992  0 0.008
#> SRR1643357     1  0.0424      0.978 0.992  0 0.008
#> SRR1643358     1  0.0000      0.979 1.000  0 0.000
#> SRR1643359     1  0.0000      0.979 1.000  0 0.000
#> SRR1643360     1  0.0000      0.979 1.000  0 0.000
#> SRR1643361     1  0.0000      0.979 1.000  0 0.000
#> SRR1643362     1  0.0000      0.979 1.000  0 0.000
#> SRR1643363     1  0.0000      0.979 1.000  0 0.000
#> SRR1643364     1  0.0000      0.979 1.000  0 0.000
#> SRR1643365     1  0.0000      0.979 1.000  0 0.000
#> SRR1643366     1  0.0000      0.979 1.000  0 0.000
#> SRR1643367     1  0.0000      0.979 1.000  0 0.000
#> SRR1643368     1  0.0000      0.979 1.000  0 0.000
#> SRR1643369     1  0.0000      0.979 1.000  0 0.000
#> SRR1643370     1  0.0000      0.979 1.000  0 0.000
#> SRR1643371     1  0.0000      0.979 1.000  0 0.000
#> SRR1643372     1  0.0000      0.979 1.000  0 0.000
#> SRR1643373     1  0.0000      0.979 1.000  0 0.000
#> SRR1643374     1  0.0000      0.979 1.000  0 0.000
#> SRR1643375     1  0.0000      0.979 1.000  0 0.000
#> SRR1643376     1  0.0000      0.979 1.000  0 0.000
#> SRR1643377     1  0.0000      0.979 1.000  0 0.000
#> SRR1643378     1  0.0000      0.979 1.000  0 0.000
#> SRR1643379     1  0.0000      0.979 1.000  0 0.000
#> SRR1643380     1  0.0000      0.979 1.000  0 0.000
#> SRR1643381     1  0.0000      0.979 1.000  0 0.000
#> SRR1643382     1  0.0000      0.979 1.000  0 0.000
#> SRR1643383     1  0.0000      0.979 1.000  0 0.000
#> SRR1643384     1  0.0000      0.979 1.000  0 0.000
#> SRR1643385     1  0.0000      0.979 1.000  0 0.000
#> SRR1643386     1  0.0000      0.979 1.000  0 0.000
#> SRR1643387     1  0.0000      0.979 1.000  0 0.000
#> SRR1643388     1  0.0000      0.979 1.000  0 0.000
#> SRR1643389     1  0.0000      0.979 1.000  0 0.000
#> SRR1643390     1  0.2448      0.943 0.924  0 0.076
#> SRR1643391     1  0.2448      0.943 0.924  0 0.076
#> SRR1643392     1  0.2448      0.943 0.924  0 0.076
#> SRR1643393     1  0.2448      0.943 0.924  0 0.076
#> SRR1643394     1  0.2448      0.943 0.924  0 0.076
#> SRR1643395     1  0.2448      0.943 0.924  0 0.076
#> SRR1643396     1  0.2448      0.943 0.924  0 0.076
#> SRR1643397     1  0.2448      0.943 0.924  0 0.076
#> SRR1643398     1  0.2448      0.943 0.924  0 0.076
#> SRR1643399     1  0.2448      0.943 0.924  0 0.076
#> SRR1643400     1  0.2448      0.943 0.924  0 0.076
#> SRR1643401     1  0.2448      0.943 0.924  0 0.076
#> SRR1643402     1  0.2448      0.943 0.924  0 0.076
#> SRR1643403     1  0.2448      0.943 0.924  0 0.076
#> SRR1643404     1  0.2448      0.943 0.924  0 0.076
#> SRR1643405     1  0.2448      0.943 0.924  0 0.076
#> SRR1643406     1  0.2448      0.943 0.924  0 0.076
#> SRR1643407     1  0.2448      0.943 0.924  0 0.076
#> SRR1643408     1  0.2448      0.943 0.924  0 0.076
#> SRR1643409     1  0.2448      0.943 0.924  0 0.076
#> SRR1643410     1  0.2448      0.943 0.924  0 0.076
#> SRR1643411     1  0.2448      0.943 0.924  0 0.076
#> SRR1643412     1  0.2448      0.943 0.924  0 0.076
#> SRR1643413     1  0.2448      0.943 0.924  0 0.076
#> SRR1643414     1  0.2448      0.943 0.924  0 0.076
#> SRR1643415     1  0.2448      0.943 0.924  0 0.076
#> SRR1643416     1  0.2448      0.943 0.924  0 0.076
#> SRR1643417     1  0.2448      0.943 0.924  0 0.076
#> SRR1643418     1  0.0000      0.979 1.000  0 0.000
#> SRR1643419     1  0.0000      0.979 1.000  0 0.000
#> SRR1643420     1  0.0000      0.979 1.000  0 0.000
#> SRR1643421     1  0.0000      0.979 1.000  0 0.000
#> SRR1643422     1  0.0000      0.979 1.000  0 0.000
#> SRR1643423     1  0.0000      0.979 1.000  0 0.000
#> SRR1643424     1  0.0000      0.979 1.000  0 0.000
#> SRR1643425     1  0.0000      0.979 1.000  0 0.000
#> SRR1643426     1  0.0000      0.979 1.000  0 0.000
#> SRR1643427     1  0.0000      0.979 1.000  0 0.000
#> SRR1643428     1  0.0000      0.979 1.000  0 0.000
#> SRR1643429     1  0.0000      0.979 1.000  0 0.000
#> SRR1643430     1  0.0000      0.979 1.000  0 0.000
#> SRR1643431     1  0.0000      0.979 1.000  0 0.000
#> SRR1643432     1  0.0000      0.979 1.000  0 0.000
#> SRR1643433     1  0.0000      0.979 1.000  0 0.000
#> SRR1643434     1  0.0000      0.979 1.000  0 0.000
#> SRR1643435     1  0.0000      0.979 1.000  0 0.000
#> SRR1643436     1  0.0000      0.979 1.000  0 0.000
#> SRR1643437     1  0.0000      0.979 1.000  0 0.000
#> SRR1643438     1  0.0000      0.979 1.000  0 0.000
#> SRR1643439     1  0.0000      0.979 1.000  0 0.000
#> SRR1643440     1  0.0000      0.979 1.000  0 0.000
#> SRR1643441     1  0.0000      0.979 1.000  0 0.000
#> SRR1643442     1  0.0000      0.979 1.000  0 0.000
#> SRR1643443     2  0.0000      1.000 0.000  1 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1 0.000
#> SRR1643505     2  0.0000      1.000 0.000  1 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1 0.000

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1    p2    p3    p4
#> SRR1643167     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643168     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643169     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643170     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643171     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643172     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643173     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643174     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643175     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643176     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643177     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643178     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643180     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643181     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643182     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643183     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643184     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643185     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643186     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643187     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643188     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643189     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643190     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643191     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643192     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643193     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643194     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643195     4  0.4985      0.122 0.468 0.000 0.000 0.532
#> SRR1643196     4  0.4985      0.122 0.468 0.000 0.000 0.532
#> SRR1643197     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643198     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643199     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643200     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643201     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643202     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643203     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643204     1  0.0000      0.920 1.000 0.000 0.000 0.000
#> SRR1643205     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643206     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643207     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643208     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643209     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643210     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643211     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643212     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643213     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643214     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643215     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643216     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643217     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643218     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643219     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643220     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643221     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643222     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643223     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643224     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643225     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643226     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643227     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643228     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643229     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643230     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643231     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643232     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643233     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643234     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643235     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643236     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643237     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643238     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643239     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643240     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643241     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643242     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643243     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643245     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643246     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643247     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643248     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643249     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643250     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643251     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643252     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643253     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643254     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643255     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643256     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643257     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643258     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643259     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643260     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643261     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643262     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643263     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643264     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643266     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643267     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643268     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643269     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643270     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643271     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643272     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643273     1  0.3837      0.777 0.776 0.000 0.000 0.224
#> SRR1643274     1  0.3837      0.777 0.776 0.000 0.000 0.224
#> SRR1643275     1  0.3837      0.777 0.776 0.000 0.000 0.224
#> SRR1643276     1  0.3837      0.777 0.776 0.000 0.000 0.224
#> SRR1643277     1  0.3837      0.777 0.776 0.000 0.000 0.224
#> SRR1643278     1  0.3837      0.777 0.776 0.000 0.000 0.224
#> SRR1643279     1  0.3837      0.777 0.776 0.000 0.000 0.224
#> SRR1643280     1  0.3837      0.777 0.776 0.000 0.000 0.224
#> SRR1643281     1  0.3837      0.777 0.776 0.000 0.000 0.224
#> SRR1643282     1  0.3837      0.777 0.776 0.000 0.000 0.224
#> SRR1643283     1  0.3837      0.777 0.776 0.000 0.000 0.224
#> SRR1643284     1  0.3837      0.777 0.776 0.000 0.000 0.224
#> SRR1643285     1  0.3837      0.777 0.776 0.000 0.000 0.224
#> SRR1643286     1  0.3837      0.777 0.776 0.000 0.000 0.224
#> SRR1643287     4  0.0707      0.965 0.020 0.000 0.000 0.980
#> SRR1643288     4  0.0707      0.965 0.020 0.000 0.000 0.980
#> SRR1643289     4  0.0707      0.965 0.020 0.000 0.000 0.980
#> SRR1643290     4  0.0707      0.965 0.020 0.000 0.000 0.980
#> SRR1643291     4  0.0707      0.965 0.020 0.000 0.000 0.980
#> SRR1643292     4  0.0707      0.965 0.020 0.000 0.000 0.980
#> SRR1643293     4  0.0707      0.965 0.020 0.000 0.000 0.980
#> SRR1643294     4  0.0707      0.965 0.020 0.000 0.000 0.980
#> SRR1643295     4  0.0707      0.965 0.020 0.000 0.000 0.980
#> SRR1643296     4  0.0707      0.965 0.020 0.000 0.000 0.980
#> SRR1643297     4  0.0707      0.965 0.020 0.000 0.000 0.980
#> SRR1643298     4  0.0707      0.965 0.020 0.000 0.000 0.980
#> SRR1643299     4  0.0707      0.965 0.020 0.000 0.000 0.980
#> SRR1643300     4  0.0707      0.965 0.020 0.000 0.000 0.980
#> SRR1643301     1  0.4406      0.667 0.700 0.000 0.000 0.300
#> SRR1643302     1  0.4406      0.667 0.700 0.000 0.000 0.300
#> SRR1643303     1  0.4406      0.667 0.700 0.000 0.000 0.300
#> SRR1643304     1  0.4406      0.667 0.700 0.000 0.000 0.300
#> SRR1643305     1  0.4406      0.667 0.700 0.000 0.000 0.300
#> SRR1643306     1  0.4406      0.667 0.700 0.000 0.000 0.300
#> SRR1643307     1  0.4406      0.667 0.700 0.000 0.000 0.300
#> SRR1643308     1  0.4406      0.667 0.700 0.000 0.000 0.300
#> SRR1643309     1  0.4406      0.667 0.700 0.000 0.000 0.300
#> SRR1643310     1  0.4406      0.667 0.700 0.000 0.000 0.300
#> SRR1643311     1  0.4406      0.667 0.700 0.000 0.000 0.300
#> SRR1643312     1  0.4406      0.667 0.700 0.000 0.000 0.300
#> SRR1643313     1  0.4406      0.667 0.700 0.000 0.000 0.300
#> SRR1643314     1  0.1302      0.921 0.956 0.000 0.000 0.044
#> SRR1643315     1  0.1302      0.921 0.956 0.000 0.000 0.044
#> SRR1643316     1  0.1302      0.921 0.956 0.000 0.000 0.044
#> SRR1643317     1  0.1302      0.921 0.956 0.000 0.000 0.044
#> SRR1643318     1  0.1302      0.921 0.956 0.000 0.000 0.044
#> SRR1643319     1  0.1302      0.921 0.956 0.000 0.000 0.044
#> SRR1643320     1  0.1302      0.921 0.956 0.000 0.000 0.044
#> SRR1643321     1  0.1302      0.921 0.956 0.000 0.000 0.044
#> SRR1643322     1  0.1302      0.921 0.956 0.000 0.000 0.044
#> SRR1643323     1  0.1302      0.921 0.956 0.000 0.000 0.044
#> SRR1643324     1  0.1302      0.921 0.956 0.000 0.000 0.044
#> SRR1643325     1  0.1302      0.921 0.956 0.000 0.000 0.044
#> SRR1643326     1  0.1302      0.921 0.956 0.000 0.000 0.044
#> SRR1643327     1  0.1302      0.921 0.956 0.000 0.000 0.044
#> SRR1643328     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643329     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643330     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643331     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643332     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643333     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643334     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643335     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643336     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643337     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643338     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643339     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643340     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643341     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643342     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643343     1  0.2334      0.901 0.908 0.000 0.004 0.088
#> SRR1643344     1  0.2334      0.901 0.908 0.000 0.004 0.088
#> SRR1643345     1  0.2334      0.901 0.908 0.000 0.004 0.088
#> SRR1643346     1  0.2334      0.901 0.908 0.000 0.004 0.088
#> SRR1643347     1  0.2334      0.901 0.908 0.000 0.004 0.088
#> SRR1643348     1  0.2334      0.901 0.908 0.000 0.004 0.088
#> SRR1643349     1  0.2334      0.901 0.908 0.000 0.004 0.088
#> SRR1643350     1  0.2334      0.901 0.908 0.000 0.004 0.088
#> SRR1643351     1  0.2334      0.901 0.908 0.000 0.004 0.088
#> SRR1643352     1  0.2334      0.901 0.908 0.000 0.004 0.088
#> SRR1643353     1  0.2334      0.901 0.908 0.000 0.004 0.088
#> SRR1643354     1  0.2334      0.901 0.908 0.000 0.004 0.088
#> SRR1643355     1  0.2334      0.901 0.908 0.000 0.004 0.088
#> SRR1643356     1  0.2334      0.901 0.908 0.000 0.004 0.088
#> SRR1643357     1  0.2334      0.901 0.908 0.000 0.004 0.088
#> SRR1643358     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643359     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643360     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643361     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643362     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643363     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643364     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643365     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643366     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643367     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643368     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643369     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643370     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643371     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643372     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643373     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643374     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643375     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643376     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643377     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643378     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643379     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643380     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643381     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643382     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643383     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643384     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643385     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643386     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643387     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643388     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643389     4  0.1389      0.972 0.048 0.000 0.000 0.952
#> SRR1643390     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643391     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643392     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643393     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643394     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643395     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643396     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643397     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643398     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643399     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643400     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643401     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643402     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643403     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643404     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643405     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643406     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643407     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643408     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643409     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643410     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643411     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643412     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643413     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643414     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643415     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643416     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643417     1  0.0927      0.926 0.976 0.000 0.008 0.016
#> SRR1643418     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643419     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643420     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643421     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643422     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643423     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643424     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643425     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643426     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643427     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643428     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643429     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643430     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643431     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643432     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643433     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643434     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643435     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643436     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643437     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643438     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643439     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643440     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643441     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643442     4  0.0469      0.961 0.012 0.000 0.000 0.988
#> SRR1643443     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643444     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643445     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643446     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643447     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643448     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643449     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643450     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643451     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643452     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643453     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643454     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643455     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643456     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643457     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643458     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643459     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643460     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643461     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643462     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643463     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643464     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643466     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643467     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643468     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643469     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643470     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643471     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643472     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643473     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643474     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643475     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643477     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643478     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643479     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643480     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643481     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643482     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643483     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643484     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643485     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643486     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643487     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643488     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643489     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643490     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643491     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643492     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643493     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643494     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643495     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643496     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643497     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643498     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643499     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643500     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643501     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643502     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643503     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643504     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643505     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643506     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643507     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643508     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643509     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643510     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643511     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643512     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643513     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643531     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643532     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643533     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643534     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643535     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643536     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643537     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643538     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643539     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643540     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643541     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643542     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643543     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643544     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643514     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643515     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643516     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643517     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643518     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643519     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643520     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643521     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643522     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643523     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643524     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643525     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643526     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643527     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643528     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643529     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643530     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643545     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643546     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643547     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643548     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643549     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643550     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643551     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643552     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643553     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643554     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643555     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643556     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643558     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643559     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643560     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643561     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643562     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643563     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643564     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643565     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643566     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643567     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643568     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643569     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643570     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643571     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643572     2  0.0188      0.996 0.000 0.996 0.000 0.004

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1    p2    p3    p4    p5
#> SRR1643167     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643168     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643169     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643170     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643171     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643172     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643173     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643174     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643175     5  0.4298      0.974 0.352 0.000 0.000 0.008 0.640
#> SRR1643176     5  0.4298      0.974 0.352 0.000 0.000 0.008 0.640
#> SRR1643177     5  0.4298      0.974 0.352 0.000 0.000 0.008 0.640
#> SRR1643178     5  0.4298      0.974 0.352 0.000 0.000 0.008 0.640
#> SRR1643180     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643181     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643182     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643183     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643184     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643185     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643186     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643187     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643188     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643189     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643190     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643191     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643192     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643193     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643194     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643195     5  0.5605      0.670 0.168 0.000 0.000 0.192 0.640
#> SRR1643196     5  0.5605      0.670 0.168 0.000 0.000 0.192 0.640
#> SRR1643197     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643198     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643199     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643200     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643201     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643202     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643203     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643204     5  0.4196      0.980 0.356 0.000 0.000 0.004 0.640
#> SRR1643205     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643206     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643207     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643208     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643209     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643210     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643211     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643212     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643213     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643214     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643215     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643216     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643217     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643218     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643219     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643220     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643221     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643222     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643223     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643224     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643225     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643226     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643227     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643228     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643229     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643230     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643231     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643232     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643233     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643234     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643235     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643236     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643237     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643238     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643239     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643240     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643241     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643242     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643243     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643245     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643246     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643247     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643248     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643249     3  0.0000      1.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643250     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643251     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643252     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643253     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643254     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643255     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643256     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643257     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643258     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643259     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643260     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643261     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643262     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643263     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643264     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643266     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643267     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643268     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643269     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643270     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643271     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643272     4  0.1626      0.891 0.044 0.000 0.000 0.940 0.016
#> SRR1643273     1  0.5325      0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643274     1  0.5325      0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643275     1  0.5325      0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643276     1  0.5325      0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643277     1  0.5325      0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643278     1  0.5325      0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643279     1  0.5325      0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643280     1  0.5325      0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643281     1  0.5325      0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643282     1  0.5325      0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643283     1  0.5325      0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643284     1  0.5325      0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643285     1  0.5325      0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643286     1  0.5325      0.605 0.636 0.000 0.000 0.276 0.088
#> SRR1643287     4  0.4390      0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643288     4  0.4390      0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643289     4  0.4390      0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643290     4  0.4390      0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643291     4  0.4390      0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643292     4  0.4390      0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643293     4  0.4390      0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643294     4  0.4390      0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643295     4  0.4390      0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643296     4  0.4390      0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643297     4  0.4390      0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643298     4  0.4390      0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643299     4  0.4390      0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643300     4  0.4390      0.812 0.084 0.000 0.000 0.760 0.156
#> SRR1643301     1  0.5123      0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643302     1  0.5123      0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643303     1  0.5123      0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643304     1  0.5123      0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643305     1  0.5123      0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643306     1  0.5123      0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643307     1  0.5123      0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643308     1  0.5123      0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643309     1  0.5123      0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643310     1  0.5123      0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643311     1  0.5123      0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643312     1  0.5123      0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643313     1  0.5123      0.505 0.572 0.000 0.000 0.384 0.044
#> SRR1643314     1  0.2438      0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643315     1  0.2438      0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643316     1  0.2438      0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643317     1  0.2438      0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643318     1  0.2438      0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643319     1  0.2438      0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643320     1  0.2438      0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643321     1  0.2438      0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643322     1  0.2438      0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643323     1  0.2438      0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643324     1  0.2438      0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643325     1  0.2438      0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643326     1  0.2438      0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643327     1  0.2438      0.754 0.900 0.000 0.000 0.060 0.040
#> SRR1643328     1  0.0865      0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643329     1  0.0865      0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643330     1  0.0865      0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643331     1  0.0865      0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643332     1  0.0865      0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643333     1  0.0865      0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643334     1  0.0865      0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643335     1  0.0865      0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643336     1  0.0865      0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643337     1  0.0865      0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643338     1  0.0865      0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643339     1  0.0865      0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643340     1  0.0865      0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643341     1  0.0865      0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643342     1  0.0865      0.743 0.972 0.000 0.004 0.000 0.024
#> SRR1643343     1  0.3471      0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643344     1  0.3471      0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643345     1  0.3471      0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643346     1  0.3471      0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643347     1  0.3471      0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643348     1  0.3471      0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643349     1  0.3471      0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643350     1  0.3471      0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643351     1  0.3471      0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643352     1  0.3471      0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643353     1  0.3471      0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643354     1  0.3471      0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643355     1  0.3471      0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643356     1  0.3471      0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643357     1  0.3471      0.722 0.836 0.000 0.000 0.092 0.072
#> SRR1643358     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643359     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643360     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643361     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643362     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643363     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643364     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643365     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643366     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643367     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643368     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643369     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643370     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643371     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643372     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643373     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643374     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643375     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643376     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643377     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643378     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643379     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643380     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643381     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643382     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643383     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643384     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643385     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643386     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643387     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643388     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643389     4  0.1626      0.893 0.044 0.000 0.000 0.940 0.016
#> SRR1643390     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643391     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643392     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643393     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643394     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643395     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643396     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643397     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643398     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643399     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643400     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643401     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643402     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643403     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643404     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643405     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643406     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643407     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643408     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643409     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643410     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643411     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643412     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643413     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643414     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643415     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643416     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643417     1  0.0451      0.751 0.988 0.000 0.004 0.000 0.008
#> SRR1643418     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643419     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643420     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643421     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643422     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643423     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643424     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643425     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643426     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643427     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643428     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643429     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643430     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643431     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643432     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643433     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643434     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643435     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643436     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643437     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643438     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643439     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643440     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643441     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643442     4  0.3242      0.816 0.000 0.000 0.000 0.784 0.216
#> SRR1643443     2  0.0880      0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643444     2  0.0880      0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643445     2  0.0880      0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643446     2  0.0880      0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643447     2  0.0880      0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643448     2  0.0880      0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643449     2  0.0880      0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643450     2  0.0880      0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643451     2  0.0880      0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643452     2  0.0880      0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643453     2  0.0880      0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643454     2  0.0880      0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643455     2  0.0880      0.985 0.000 0.968 0.000 0.000 0.032
#> SRR1643456     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643457     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643458     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643459     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643460     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643461     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643462     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643463     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643464     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643466     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643467     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643468     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643469     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643470     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643471     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643472     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643473     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643474     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643475     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643477     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643478     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643479     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643480     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643481     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643482     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643483     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643484     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643485     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643486     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643487     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643488     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643489     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643490     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643491     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643492     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643493     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643494     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643495     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643496     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643497     2  0.0162      0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643498     2  0.0162      0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643499     2  0.0162      0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643500     2  0.0162      0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643501     2  0.0162      0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643502     2  0.0162      0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643503     2  0.0162      0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643504     2  0.0162      0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643505     2  0.0162      0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643506     2  0.0162      0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643507     2  0.0162      0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643508     2  0.0162      0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643509     2  0.0162      0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643510     2  0.0162      0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643511     2  0.0162      0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643512     2  0.0162      0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643513     2  0.0162      0.988 0.000 0.996 0.000 0.000 0.004
#> SRR1643531     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643532     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643533     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643534     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643535     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643536     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643537     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643538     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643539     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643540     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643541     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643542     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643543     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643544     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643514     2  0.0703      0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643515     2  0.0703      0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643516     2  0.0703      0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643517     2  0.0703      0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643518     2  0.0703      0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643519     2  0.0703      0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643520     2  0.0703      0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643521     2  0.0703      0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643522     2  0.0703      0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643523     2  0.0703      0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643524     2  0.0703      0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643525     2  0.0703      0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643526     2  0.0703      0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643527     2  0.0703      0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643528     2  0.0703      0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643529     2  0.0703      0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643530     2  0.0703      0.987 0.000 0.976 0.000 0.000 0.024
#> SRR1643545     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643546     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643547     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643548     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643549     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643550     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643551     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643552     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643553     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643554     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643555     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643556     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643558     2  0.0000      0.989 0.000 1.000 0.000 0.000 0.000
#> SRR1643559     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643560     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643561     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643562     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643563     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643564     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643565     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643566     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643567     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643568     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643569     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643570     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643571     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028
#> SRR1643572     2  0.0794      0.986 0.000 0.972 0.000 0.000 0.028

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2    p3    p4    p5    p6
#> SRR1643167     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643168     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643169     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643170     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643171     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643172     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643173     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643174     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643175     5  0.3133      0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643176     5  0.3133      0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643177     5  0.3133      0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643178     5  0.3133      0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643180     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643181     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643182     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643183     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643184     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643185     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643186     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643187     5  0.3133      0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643188     5  0.3133      0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643189     5  0.3133      0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643190     5  0.3133      0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643191     5  0.3023      0.988 0.180 0.000 0.000 0.008 0.808 0.004
#> SRR1643192     5  0.3023      0.988 0.180 0.000 0.000 0.008 0.808 0.004
#> SRR1643193     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643194     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643195     5  0.3798      0.845 0.136 0.000 0.000 0.068 0.788 0.008
#> SRR1643196     5  0.3798      0.845 0.136 0.000 0.000 0.068 0.788 0.008
#> SRR1643197     5  0.3133      0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643198     5  0.3133      0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643199     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643200     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643201     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643202     5  0.2882      0.989 0.180 0.000 0.000 0.008 0.812 0.000
#> SRR1643203     5  0.3133      0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643204     5  0.3133      0.988 0.180 0.000 0.000 0.008 0.804 0.008
#> SRR1643205     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643206     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643207     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643208     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643209     3  0.0146      0.997 0.000 0.000 0.996 0.000 0.004 0.000
#> SRR1643210     3  0.0146      0.997 0.000 0.000 0.996 0.000 0.004 0.000
#> SRR1643211     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643212     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643213     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643214     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643215     3  0.0260      0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643216     3  0.0260      0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643217     3  0.0260      0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643218     3  0.0260      0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643219     3  0.0260      0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643220     3  0.0260      0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643221     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643222     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643223     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643224     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643225     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643226     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643227     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643228     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643229     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643230     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643231     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643232     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643233     3  0.0260      0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643234     3  0.0260      0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643235     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643236     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643237     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643238     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643239     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643240     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643241     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643242     3  0.0260      0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643243     3  0.0260      0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643245     3  0.0260      0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643246     3  0.0260      0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643247     3  0.0260      0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643248     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643249     3  0.0260      0.996 0.000 0.000 0.992 0.000 0.008 0.000
#> SRR1643250     4  0.3012      0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643251     4  0.3012      0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643252     4  0.3012      0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643253     4  0.3012      0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643254     4  0.3012      0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643255     4  0.3012      0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643256     4  0.3012      0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643257     4  0.3012      0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643258     4  0.3012      0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643259     4  0.3012      0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643260     4  0.3012      0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643261     4  0.3012      0.828 0.020 0.000 0.000 0.852 0.024 0.104
#> SRR1643262     4  0.2964      0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643263     4  0.2964      0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643264     4  0.2964      0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643266     4  0.2964      0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643267     4  0.2964      0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643268     4  0.2964      0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643269     4  0.2964      0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643270     4  0.2964      0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643271     4  0.2964      0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643272     4  0.2964      0.831 0.020 0.000 0.000 0.856 0.024 0.100
#> SRR1643273     1  0.7163      0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643274     1  0.7163      0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643275     1  0.7163      0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643276     1  0.7163      0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643277     1  0.7163      0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643278     1  0.7163      0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643279     1  0.7163      0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643280     1  0.7163      0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643281     1  0.7163      0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643282     1  0.7163      0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643283     1  0.7163      0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643284     1  0.7163      0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643285     1  0.7163      0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643286     1  0.7163      0.410 0.424 0.000 0.000 0.192 0.116 0.268
#> SRR1643287     6  0.6313      0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643288     6  0.6313      0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643289     6  0.6313      0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643290     6  0.6313      0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643291     6  0.6313      0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643292     6  0.6313      0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643293     6  0.6313      0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643294     6  0.6313      0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643295     6  0.6313      0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643296     6  0.6313      0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643297     6  0.6313      0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643298     6  0.6313      0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643299     6  0.6313      0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643300     6  0.6313      0.432 0.072 0.000 0.000 0.400 0.088 0.440
#> SRR1643301     1  0.6659      0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643302     1  0.6659      0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643303     1  0.6659      0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643304     1  0.6659      0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643305     1  0.6659      0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643306     1  0.6659      0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643307     1  0.6659      0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643308     1  0.6659      0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643309     1  0.6659      0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643310     1  0.6659      0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643311     1  0.6659      0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643312     1  0.6659      0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643313     1  0.6659      0.464 0.476 0.000 0.000 0.308 0.088 0.128
#> SRR1643314     1  0.4464      0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643315     1  0.4464      0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643316     1  0.4464      0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643317     1  0.4464      0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643318     1  0.4464      0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643319     1  0.4464      0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643320     1  0.4464      0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643321     1  0.4464      0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643322     1  0.4464      0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643323     1  0.4464      0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643324     1  0.4464      0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643325     1  0.4464      0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643326     1  0.4464      0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643327     1  0.4464      0.662 0.764 0.000 0.000 0.104 0.064 0.068
#> SRR1643328     1  0.1866      0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643329     1  0.1866      0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643330     1  0.1866      0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643331     1  0.1866      0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643332     1  0.1866      0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643333     1  0.1866      0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643334     1  0.1866      0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643335     1  0.1866      0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643336     1  0.1866      0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643337     1  0.1866      0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643338     1  0.1866      0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643339     1  0.1866      0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643340     1  0.1866      0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643341     1  0.1866      0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643342     1  0.1866      0.670 0.908 0.000 0.000 0.000 0.084 0.008
#> SRR1643343     1  0.5633      0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643344     1  0.5633      0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643345     1  0.5633      0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643346     1  0.5633      0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643347     1  0.5633      0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643348     1  0.5633      0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643349     1  0.5633      0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643350     1  0.5633      0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643351     1  0.5633      0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643352     1  0.5633      0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643353     1  0.5633      0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643354     1  0.5633      0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643355     1  0.5633      0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643356     1  0.5633      0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643357     1  0.5633      0.607 0.660 0.000 0.000 0.092 0.108 0.140
#> SRR1643358     4  0.0146      0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643359     4  0.0146      0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643360     4  0.0146      0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643361     4  0.0146      0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643362     4  0.0146      0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643363     4  0.0146      0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643364     4  0.0146      0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643365     4  0.0146      0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643366     4  0.0146      0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643367     4  0.0146      0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643368     4  0.0146      0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643369     4  0.0146      0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643370     4  0.0146      0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643371     4  0.0146      0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643372     4  0.0146      0.886 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643373     4  0.0291      0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643374     4  0.0291      0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643375     4  0.0291      0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643376     4  0.0291      0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643377     4  0.0291      0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643378     4  0.0291      0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643379     4  0.0291      0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643380     4  0.0291      0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643381     4  0.0291      0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643382     4  0.0291      0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643383     4  0.0291      0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643384     4  0.0291      0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643385     4  0.0291      0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643386     4  0.0291      0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643387     4  0.0291      0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643388     4  0.0291      0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643389     4  0.0291      0.884 0.004 0.000 0.000 0.992 0.000 0.004
#> SRR1643390     1  0.1398      0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643391     1  0.1398      0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643392     1  0.1398      0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643393     1  0.1398      0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643394     1  0.1398      0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643395     1  0.1398      0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643396     1  0.1398      0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643397     1  0.1398      0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643398     1  0.1398      0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643399     1  0.1398      0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643400     1  0.1398      0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643401     1  0.1398      0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643402     1  0.1398      0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643403     1  0.1398      0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643404     1  0.1398      0.678 0.940 0.000 0.000 0.000 0.052 0.008
#> SRR1643405     1  0.1500      0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643406     1  0.1500      0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643407     1  0.1500      0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643408     1  0.1500      0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643409     1  0.1500      0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643410     1  0.1500      0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643411     1  0.1500      0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643412     1  0.1500      0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643413     1  0.1500      0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643414     1  0.1500      0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643415     1  0.1500      0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643416     1  0.1500      0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643417     1  0.1500      0.677 0.936 0.000 0.000 0.000 0.052 0.012
#> SRR1643418     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643419     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643420     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643421     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643422     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643423     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643424     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643425     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643426     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643427     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643428     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643429     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643430     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643431     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643432     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643433     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643434     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643435     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643436     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643437     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643438     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643439     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643440     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643441     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643442     6  0.3843      0.704 0.000 0.000 0.000 0.452 0.000 0.548
#> SRR1643443     2  0.2412      0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643444     2  0.2412      0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643445     2  0.2412      0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643446     2  0.2412      0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643447     2  0.2412      0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643448     2  0.2412      0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643449     2  0.2412      0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643450     2  0.2412      0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643451     2  0.2412      0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643452     2  0.2412      0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643453     2  0.2412      0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643454     2  0.2412      0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643455     2  0.2412      0.940 0.000 0.880 0.000 0.000 0.028 0.092
#> SRR1643456     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643457     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643458     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643459     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643460     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643461     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643462     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643463     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643464     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643466     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643467     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643468     2  0.0260      0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643469     2  0.0260      0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643470     2  0.0260      0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643471     2  0.0260      0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643472     2  0.0260      0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643473     2  0.0260      0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643474     2  0.0260      0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643475     2  0.0260      0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643477     2  0.0260      0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643478     2  0.0260      0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643479     2  0.0260      0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643480     2  0.0260      0.951 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643481     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643482     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643483     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643484     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643485     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643486     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643487     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643488     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643489     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643490     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643491     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643492     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643493     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643494     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643495     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643496     2  0.0146      0.952 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643497     2  0.0547      0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643498     2  0.0547      0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643499     2  0.0547      0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643500     2  0.0547      0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643501     2  0.0547      0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643502     2  0.0547      0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643503     2  0.0547      0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643504     2  0.0547      0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643505     2  0.0547      0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643506     2  0.0547      0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643507     2  0.0547      0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643508     2  0.0547      0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643509     2  0.0547      0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643510     2  0.0547      0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643511     2  0.0547      0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643512     2  0.0547      0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643513     2  0.0547      0.949 0.000 0.980 0.000 0.000 0.000 0.020
#> SRR1643531     2  0.2309      0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643532     2  0.2309      0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643533     2  0.2309      0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643534     2  0.2309      0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643535     2  0.2309      0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643536     2  0.2309      0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643537     2  0.2309      0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643538     2  0.2309      0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643539     2  0.2309      0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643540     2  0.2309      0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643541     2  0.2309      0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643542     2  0.2309      0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643543     2  0.2309      0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643544     2  0.2309      0.941 0.000 0.888 0.000 0.000 0.028 0.084
#> SRR1643514     2  0.2282      0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643515     2  0.2282      0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643516     2  0.2282      0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643517     2  0.2282      0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643518     2  0.2282      0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643519     2  0.2282      0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643520     2  0.2282      0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643521     2  0.2282      0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643522     2  0.2282      0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643523     2  0.2282      0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643524     2  0.2282      0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643525     2  0.2282      0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643526     2  0.2282      0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643527     2  0.2282      0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643528     2  0.2282      0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643529     2  0.2282      0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643530     2  0.2282      0.941 0.000 0.888 0.000 0.000 0.024 0.088
#> SRR1643545     2  0.0363      0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643546     2  0.0363      0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643547     2  0.0363      0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643548     2  0.0363      0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643549     2  0.0363      0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643550     2  0.0363      0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643551     2  0.0363      0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643552     2  0.0363      0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643553     2  0.0363      0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643554     2  0.0363      0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643555     2  0.0363      0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643556     2  0.0363      0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643558     2  0.0363      0.951 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643559     2  0.2255      0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643560     2  0.2255      0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643561     2  0.2255      0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643562     2  0.2255      0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643563     2  0.2255      0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643564     2  0.2255      0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643565     2  0.2255      0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643566     2  0.2255      0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643567     2  0.2255      0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643568     2  0.2255      0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643569     2  0.2255      0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643570     2  0.2255      0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643571     2  0.2255      0.942 0.000 0.892 0.000 0.000 0.028 0.080
#> SRR1643572     2  0.2255      0.942 0.000 0.892 0.000 0.000 0.028 0.080

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-SD-skmeans-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-SD-skmeans-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-SD-skmeans-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-SD-skmeans-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-SD-skmeans-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-SD-skmeans-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-SD-skmeans-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-SD-skmeans-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-SD-skmeans-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-SD-skmeans-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-SD-skmeans-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-SD-skmeans-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-SD-skmeans-get-signatures-3

get_signatures(res, k = 5)

plot of chunk tab-SD-skmeans-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-SD-skmeans-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-SD-skmeans-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-SD-skmeans-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-SD-skmeans-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)

plot of chunk tab-SD-skmeans-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-SD-skmeans-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk SD-skmeans-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-SD-skmeans-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-SD-skmeans-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-SD-skmeans-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-SD-skmeans-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-SD-skmeans-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk SD-skmeans-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


SD:pam*

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["SD", "pam"]
# you can also extract it by
# res = res_list["SD:pam"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'SD' method.
#>   Subgroups are detected by 'pam' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 6.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk SD-pam-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk SD-pam-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000         0.4350 0.566   0.566
#> 3 3 1.000           0.999       0.999         0.2889 0.874   0.777
#> 4 4 0.918           0.948       0.969         0.2841 0.838   0.630
#> 5 5 0.917           0.946       0.974         0.0727 0.950   0.818
#> 6 6 0.907           0.912       0.918         0.0430 0.969   0.862

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 6
#> attr(,"optional")
#> [1] 2 3 4 5

There is also optional best \(k\) = 2 3 4 5 that is worth to check.

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1 p2    p3
#> SRR1643167     1    0.00      1.000 1.000  0 0.000
#> SRR1643168     1    0.00      1.000 1.000  0 0.000
#> SRR1643169     1    0.00      1.000 1.000  0 0.000
#> SRR1643170     1    0.00      1.000 1.000  0 0.000
#> SRR1643171     1    0.00      1.000 1.000  0 0.000
#> SRR1643172     1    0.00      1.000 1.000  0 0.000
#> SRR1643173     1    0.00      1.000 1.000  0 0.000
#> SRR1643174     1    0.00      1.000 1.000  0 0.000
#> SRR1643175     1    0.00      1.000 1.000  0 0.000
#> SRR1643176     1    0.00      1.000 1.000  0 0.000
#> SRR1643177     1    0.00      1.000 1.000  0 0.000
#> SRR1643178     1    0.00      1.000 1.000  0 0.000
#> SRR1643180     1    0.00      1.000 1.000  0 0.000
#> SRR1643181     1    0.00      1.000 1.000  0 0.000
#> SRR1643182     1    0.00      1.000 1.000  0 0.000
#> SRR1643183     1    0.00      1.000 1.000  0 0.000
#> SRR1643184     1    0.00      1.000 1.000  0 0.000
#> SRR1643185     1    0.00      1.000 1.000  0 0.000
#> SRR1643186     1    0.00      1.000 1.000  0 0.000
#> SRR1643187     1    0.00      1.000 1.000  0 0.000
#> SRR1643188     1    0.00      1.000 1.000  0 0.000
#> SRR1643189     1    0.00      1.000 1.000  0 0.000
#> SRR1643190     1    0.00      1.000 1.000  0 0.000
#> SRR1643191     1    0.00      1.000 1.000  0 0.000
#> SRR1643192     1    0.00      1.000 1.000  0 0.000
#> SRR1643193     1    0.00      1.000 1.000  0 0.000
#> SRR1643194     1    0.00      1.000 1.000  0 0.000
#> SRR1643195     1    0.00      1.000 1.000  0 0.000
#> SRR1643196     1    0.00      1.000 1.000  0 0.000
#> SRR1643197     1    0.00      1.000 1.000  0 0.000
#> SRR1643198     1    0.00      1.000 1.000  0 0.000
#> SRR1643199     1    0.00      1.000 1.000  0 0.000
#> SRR1643200     1    0.00      1.000 1.000  0 0.000
#> SRR1643201     1    0.00      1.000 1.000  0 0.000
#> SRR1643202     1    0.00      1.000 1.000  0 0.000
#> SRR1643203     1    0.00      1.000 1.000  0 0.000
#> SRR1643204     1    0.00      1.000 1.000  0 0.000
#> SRR1643205     3    0.00      0.994 0.000  0 1.000
#> SRR1643206     3    0.00      0.994 0.000  0 1.000
#> SRR1643207     3    0.00      0.994 0.000  0 1.000
#> SRR1643208     3    0.00      0.994 0.000  0 1.000
#> SRR1643209     3    0.00      0.994 0.000  0 1.000
#> SRR1643210     3    0.00      0.994 0.000  0 1.000
#> SRR1643211     3    0.00      0.994 0.000  0 1.000
#> SRR1643212     3    0.00      0.994 0.000  0 1.000
#> SRR1643213     3    0.00      0.994 0.000  0 1.000
#> SRR1643214     3    0.00      0.994 0.000  0 1.000
#> SRR1643215     3    0.00      0.994 0.000  0 1.000
#> SRR1643216     3    0.00      0.994 0.000  0 1.000
#> SRR1643217     3    0.00      0.994 0.000  0 1.000
#> SRR1643218     3    0.00      0.994 0.000  0 1.000
#> SRR1643219     3    0.00      0.994 0.000  0 1.000
#> SRR1643220     3    0.00      0.994 0.000  0 1.000
#> SRR1643221     3    0.00      0.994 0.000  0 1.000
#> SRR1643222     3    0.00      0.994 0.000  0 1.000
#> SRR1643223     3    0.00      0.994 0.000  0 1.000
#> SRR1643224     3    0.00      0.994 0.000  0 1.000
#> SRR1643225     3    0.00      0.994 0.000  0 1.000
#> SRR1643226     3    0.00      0.994 0.000  0 1.000
#> SRR1643227     3    0.00      0.994 0.000  0 1.000
#> SRR1643228     3    0.00      0.994 0.000  0 1.000
#> SRR1643229     3    0.00      0.994 0.000  0 1.000
#> SRR1643230     3    0.00      0.994 0.000  0 1.000
#> SRR1643231     3    0.00      0.994 0.000  0 1.000
#> SRR1643232     3    0.00      0.994 0.000  0 1.000
#> SRR1643233     3    0.00      0.994 0.000  0 1.000
#> SRR1643234     3    0.00      0.994 0.000  0 1.000
#> SRR1643235     3    0.00      0.994 0.000  0 1.000
#> SRR1643236     3    0.00      0.994 0.000  0 1.000
#> SRR1643237     3    0.00      0.994 0.000  0 1.000
#> SRR1643238     3    0.00      0.994 0.000  0 1.000
#> SRR1643239     3    0.00      0.994 0.000  0 1.000
#> SRR1643240     3    0.00      0.994 0.000  0 1.000
#> SRR1643241     3    0.00      0.994 0.000  0 1.000
#> SRR1643242     3    0.00      0.994 0.000  0 1.000
#> SRR1643243     3    0.00      0.994 0.000  0 1.000
#> SRR1643245     3    0.00      0.994 0.000  0 1.000
#> SRR1643246     3    0.00      0.994 0.000  0 1.000
#> SRR1643247     3    0.00      0.994 0.000  0 1.000
#> SRR1643248     3    0.00      0.994 0.000  0 1.000
#> SRR1643249     3    0.46      0.737 0.204  0 0.796
#> SRR1643250     1    0.00      1.000 1.000  0 0.000
#> SRR1643251     1    0.00      1.000 1.000  0 0.000
#> SRR1643252     1    0.00      1.000 1.000  0 0.000
#> SRR1643253     1    0.00      1.000 1.000  0 0.000
#> SRR1643254     1    0.00      1.000 1.000  0 0.000
#> SRR1643255     1    0.00      1.000 1.000  0 0.000
#> SRR1643256     1    0.00      1.000 1.000  0 0.000
#> SRR1643257     1    0.00      1.000 1.000  0 0.000
#> SRR1643258     1    0.00      1.000 1.000  0 0.000
#> SRR1643259     1    0.00      1.000 1.000  0 0.000
#> SRR1643260     1    0.00      1.000 1.000  0 0.000
#> SRR1643261     1    0.00      1.000 1.000  0 0.000
#> SRR1643262     1    0.00      1.000 1.000  0 0.000
#> SRR1643263     1    0.00      1.000 1.000  0 0.000
#> SRR1643264     1    0.00      1.000 1.000  0 0.000
#> SRR1643266     1    0.00      1.000 1.000  0 0.000
#> SRR1643267     1    0.00      1.000 1.000  0 0.000
#> SRR1643268     1    0.00      1.000 1.000  0 0.000
#> SRR1643269     1    0.00      1.000 1.000  0 0.000
#> SRR1643270     1    0.00      1.000 1.000  0 0.000
#> SRR1643271     1    0.00      1.000 1.000  0 0.000
#> SRR1643272     1    0.00      1.000 1.000  0 0.000
#> SRR1643273     1    0.00      1.000 1.000  0 0.000
#> SRR1643274     1    0.00      1.000 1.000  0 0.000
#> SRR1643275     1    0.00      1.000 1.000  0 0.000
#> SRR1643276     1    0.00      1.000 1.000  0 0.000
#> SRR1643277     1    0.00      1.000 1.000  0 0.000
#> SRR1643278     1    0.00      1.000 1.000  0 0.000
#> SRR1643279     1    0.00      1.000 1.000  0 0.000
#> SRR1643280     1    0.00      1.000 1.000  0 0.000
#> SRR1643281     1    0.00      1.000 1.000  0 0.000
#> SRR1643282     1    0.00      1.000 1.000  0 0.000
#> SRR1643283     1    0.00      1.000 1.000  0 0.000
#> SRR1643284     1    0.00      1.000 1.000  0 0.000
#> SRR1643285     1    0.00      1.000 1.000  0 0.000
#> SRR1643286     1    0.00      1.000 1.000  0 0.000
#> SRR1643287     1    0.00      1.000 1.000  0 0.000
#> SRR1643288     1    0.00      1.000 1.000  0 0.000
#> SRR1643289     1    0.00      1.000 1.000  0 0.000
#> SRR1643290     1    0.00      1.000 1.000  0 0.000
#> SRR1643291     1    0.00      1.000 1.000  0 0.000
#> SRR1643292     1    0.00      1.000 1.000  0 0.000
#> SRR1643293     1    0.00      1.000 1.000  0 0.000
#> SRR1643294     1    0.00      1.000 1.000  0 0.000
#> SRR1643295     1    0.00      1.000 1.000  0 0.000
#> SRR1643296     1    0.00      1.000 1.000  0 0.000
#> SRR1643297     1    0.00      1.000 1.000  0 0.000
#> SRR1643298     1    0.00      1.000 1.000  0 0.000
#> SRR1643299     1    0.00      1.000 1.000  0 0.000
#> SRR1643300     1    0.00      1.000 1.000  0 0.000
#> SRR1643301     1    0.00      1.000 1.000  0 0.000
#> SRR1643302     1    0.00      1.000 1.000  0 0.000
#> SRR1643303     1    0.00      1.000 1.000  0 0.000
#> SRR1643304     1    0.00      1.000 1.000  0 0.000
#> SRR1643305     1    0.00      1.000 1.000  0 0.000
#> SRR1643306     1    0.00      1.000 1.000  0 0.000
#> SRR1643307     1    0.00      1.000 1.000  0 0.000
#> SRR1643308     1    0.00      1.000 1.000  0 0.000
#> SRR1643309     1    0.00      1.000 1.000  0 0.000
#> SRR1643310     1    0.00      1.000 1.000  0 0.000
#> SRR1643311     1    0.00      1.000 1.000  0 0.000
#> SRR1643312     1    0.00      1.000 1.000  0 0.000
#> SRR1643313     1    0.00      1.000 1.000  0 0.000
#> SRR1643314     1    0.00      1.000 1.000  0 0.000
#> SRR1643315     1    0.00      1.000 1.000  0 0.000
#> SRR1643316     1    0.00      1.000 1.000  0 0.000
#> SRR1643317     1    0.00      1.000 1.000  0 0.000
#> SRR1643318     1    0.00      1.000 1.000  0 0.000
#> SRR1643319     1    0.00      1.000 1.000  0 0.000
#> SRR1643320     1    0.00      1.000 1.000  0 0.000
#> SRR1643321     1    0.00      1.000 1.000  0 0.000
#> SRR1643322     1    0.00      1.000 1.000  0 0.000
#> SRR1643323     1    0.00      1.000 1.000  0 0.000
#> SRR1643324     1    0.00      1.000 1.000  0 0.000
#> SRR1643325     1    0.00      1.000 1.000  0 0.000
#> SRR1643326     1    0.00      1.000 1.000  0 0.000
#> SRR1643327     1    0.00      1.000 1.000  0 0.000
#> SRR1643328     1    0.00      1.000 1.000  0 0.000
#> SRR1643329     1    0.00      1.000 1.000  0 0.000
#> SRR1643330     1    0.00      1.000 1.000  0 0.000
#> SRR1643331     1    0.00      1.000 1.000  0 0.000
#> SRR1643332     1    0.00      1.000 1.000  0 0.000
#> SRR1643333     1    0.00      1.000 1.000  0 0.000
#> SRR1643334     1    0.00      1.000 1.000  0 0.000
#> SRR1643335     1    0.00      1.000 1.000  0 0.000
#> SRR1643336     1    0.00      1.000 1.000  0 0.000
#> SRR1643337     1    0.00      1.000 1.000  0 0.000
#> SRR1643338     1    0.00      1.000 1.000  0 0.000
#> SRR1643339     1    0.00      1.000 1.000  0 0.000
#> SRR1643340     1    0.00      1.000 1.000  0 0.000
#> SRR1643341     1    0.00      1.000 1.000  0 0.000
#> SRR1643342     1    0.00      1.000 1.000  0 0.000
#> SRR1643343     1    0.00      1.000 1.000  0 0.000
#> SRR1643344     1    0.00      1.000 1.000  0 0.000
#> SRR1643345     1    0.00      1.000 1.000  0 0.000
#> SRR1643346     1    0.00      1.000 1.000  0 0.000
#> SRR1643347     1    0.00      1.000 1.000  0 0.000
#> SRR1643348     1    0.00      1.000 1.000  0 0.000
#> SRR1643349     1    0.00      1.000 1.000  0 0.000
#> SRR1643350     1    0.00      1.000 1.000  0 0.000
#> SRR1643351     1    0.00      1.000 1.000  0 0.000
#> SRR1643352     1    0.00      1.000 1.000  0 0.000
#> SRR1643353     1    0.00      1.000 1.000  0 0.000
#> SRR1643354     1    0.00      1.000 1.000  0 0.000
#> SRR1643355     1    0.00      1.000 1.000  0 0.000
#> SRR1643356     1    0.00      1.000 1.000  0 0.000
#> SRR1643357     1    0.00      1.000 1.000  0 0.000
#> SRR1643358     1    0.00      1.000 1.000  0 0.000
#> SRR1643359     1    0.00      1.000 1.000  0 0.000
#> SRR1643360     1    0.00      1.000 1.000  0 0.000
#> SRR1643361     1    0.00      1.000 1.000  0 0.000
#> SRR1643362     1    0.00      1.000 1.000  0 0.000
#> SRR1643363     1    0.00      1.000 1.000  0 0.000
#> SRR1643364     1    0.00      1.000 1.000  0 0.000
#> SRR1643365     1    0.00      1.000 1.000  0 0.000
#> SRR1643366     1    0.00      1.000 1.000  0 0.000
#> SRR1643367     1    0.00      1.000 1.000  0 0.000
#> SRR1643368     1    0.00      1.000 1.000  0 0.000
#> SRR1643369     1    0.00      1.000 1.000  0 0.000
#> SRR1643370     1    0.00      1.000 1.000  0 0.000
#> SRR1643371     1    0.00      1.000 1.000  0 0.000
#> SRR1643372     1    0.00      1.000 1.000  0 0.000
#> SRR1643373     1    0.00      1.000 1.000  0 0.000
#> SRR1643374     1    0.00      1.000 1.000  0 0.000
#> SRR1643375     1    0.00      1.000 1.000  0 0.000
#> SRR1643376     1    0.00      1.000 1.000  0 0.000
#> SRR1643377     1    0.00      1.000 1.000  0 0.000
#> SRR1643378     1    0.00      1.000 1.000  0 0.000
#> SRR1643379     1    0.00      1.000 1.000  0 0.000
#> SRR1643380     1    0.00      1.000 1.000  0 0.000
#> SRR1643381     1    0.00      1.000 1.000  0 0.000
#> SRR1643382     1    0.00      1.000 1.000  0 0.000
#> SRR1643383     1    0.00      1.000 1.000  0 0.000
#> SRR1643384     1    0.00      1.000 1.000  0 0.000
#> SRR1643385     1    0.00      1.000 1.000  0 0.000
#> SRR1643386     1    0.00      1.000 1.000  0 0.000
#> SRR1643387     1    0.00      1.000 1.000  0 0.000
#> SRR1643388     1    0.00      1.000 1.000  0 0.000
#> SRR1643389     1    0.00      1.000 1.000  0 0.000
#> SRR1643390     1    0.00      1.000 1.000  0 0.000
#> SRR1643391     1    0.00      1.000 1.000  0 0.000
#> SRR1643392     1    0.00      1.000 1.000  0 0.000
#> SRR1643393     1    0.00      1.000 1.000  0 0.000
#> SRR1643394     1    0.00      1.000 1.000  0 0.000
#> SRR1643395     1    0.00      1.000 1.000  0 0.000
#> SRR1643396     1    0.00      1.000 1.000  0 0.000
#> SRR1643397     1    0.00      1.000 1.000  0 0.000
#> SRR1643398     1    0.00      1.000 1.000  0 0.000
#> SRR1643399     1    0.00      1.000 1.000  0 0.000
#> SRR1643400     1    0.00      1.000 1.000  0 0.000
#> SRR1643401     1    0.00      1.000 1.000  0 0.000
#> SRR1643402     1    0.00      1.000 1.000  0 0.000
#> SRR1643403     1    0.00      1.000 1.000  0 0.000
#> SRR1643404     1    0.00      1.000 1.000  0 0.000
#> SRR1643405     1    0.00      1.000 1.000  0 0.000
#> SRR1643406     1    0.00      1.000 1.000  0 0.000
#> SRR1643407     1    0.00      1.000 1.000  0 0.000
#> SRR1643408     1    0.00      1.000 1.000  0 0.000
#> SRR1643409     1    0.00      1.000 1.000  0 0.000
#> SRR1643410     1    0.00      1.000 1.000  0 0.000
#> SRR1643411     1    0.00      1.000 1.000  0 0.000
#> SRR1643412     1    0.00      1.000 1.000  0 0.000
#> SRR1643413     1    0.00      1.000 1.000  0 0.000
#> SRR1643414     1    0.00      1.000 1.000  0 0.000
#> SRR1643415     1    0.00      1.000 1.000  0 0.000
#> SRR1643416     1    0.00      1.000 1.000  0 0.000
#> SRR1643417     1    0.00      1.000 1.000  0 0.000
#> SRR1643418     1    0.00      1.000 1.000  0 0.000
#> SRR1643419     1    0.00      1.000 1.000  0 0.000
#> SRR1643420     1    0.00      1.000 1.000  0 0.000
#> SRR1643421     1    0.00      1.000 1.000  0 0.000
#> SRR1643422     1    0.00      1.000 1.000  0 0.000
#> SRR1643423     1    0.00      1.000 1.000  0 0.000
#> SRR1643424     1    0.00      1.000 1.000  0 0.000
#> SRR1643425     1    0.00      1.000 1.000  0 0.000
#> SRR1643426     1    0.00      1.000 1.000  0 0.000
#> SRR1643427     1    0.00      1.000 1.000  0 0.000
#> SRR1643428     1    0.00      1.000 1.000  0 0.000
#> SRR1643429     1    0.00      1.000 1.000  0 0.000
#> SRR1643430     1    0.00      1.000 1.000  0 0.000
#> SRR1643431     1    0.00      1.000 1.000  0 0.000
#> SRR1643432     1    0.00      1.000 1.000  0 0.000
#> SRR1643433     1    0.00      1.000 1.000  0 0.000
#> SRR1643434     1    0.00      1.000 1.000  0 0.000
#> SRR1643435     1    0.00      1.000 1.000  0 0.000
#> SRR1643436     1    0.00      1.000 1.000  0 0.000
#> SRR1643437     1    0.00      1.000 1.000  0 0.000
#> SRR1643438     1    0.00      1.000 1.000  0 0.000
#> SRR1643439     1    0.00      1.000 1.000  0 0.000
#> SRR1643440     1    0.00      1.000 1.000  0 0.000
#> SRR1643441     1    0.00      1.000 1.000  0 0.000
#> SRR1643442     1    0.00      1.000 1.000  0 0.000
#> SRR1643443     2    0.00      1.000 0.000  1 0.000
#> SRR1643444     2    0.00      1.000 0.000  1 0.000
#> SRR1643445     2    0.00      1.000 0.000  1 0.000
#> SRR1643446     2    0.00      1.000 0.000  1 0.000
#> SRR1643447     2    0.00      1.000 0.000  1 0.000
#> SRR1643448     2    0.00      1.000 0.000  1 0.000
#> SRR1643449     2    0.00      1.000 0.000  1 0.000
#> SRR1643450     2    0.00      1.000 0.000  1 0.000
#> SRR1643451     2    0.00      1.000 0.000  1 0.000
#> SRR1643452     2    0.00      1.000 0.000  1 0.000
#> SRR1643453     2    0.00      1.000 0.000  1 0.000
#> SRR1643454     2    0.00      1.000 0.000  1 0.000
#> SRR1643455     2    0.00      1.000 0.000  1 0.000
#> SRR1643456     2    0.00      1.000 0.000  1 0.000
#> SRR1643457     2    0.00      1.000 0.000  1 0.000
#> SRR1643458     2    0.00      1.000 0.000  1 0.000
#> SRR1643459     2    0.00      1.000 0.000  1 0.000
#> SRR1643460     2    0.00      1.000 0.000  1 0.000
#> SRR1643461     2    0.00      1.000 0.000  1 0.000
#> SRR1643462     2    0.00      1.000 0.000  1 0.000
#> SRR1643463     2    0.00      1.000 0.000  1 0.000
#> SRR1643464     2    0.00      1.000 0.000  1 0.000
#> SRR1643466     2    0.00      1.000 0.000  1 0.000
#> SRR1643467     2    0.00      1.000 0.000  1 0.000
#> SRR1643468     2    0.00      1.000 0.000  1 0.000
#> SRR1643469     2    0.00      1.000 0.000  1 0.000
#> SRR1643470     2    0.00      1.000 0.000  1 0.000
#> SRR1643471     2    0.00      1.000 0.000  1 0.000
#> SRR1643472     2    0.00      1.000 0.000  1 0.000
#> SRR1643473     2    0.00      1.000 0.000  1 0.000
#> SRR1643474     2    0.00      1.000 0.000  1 0.000
#> SRR1643475     2    0.00      1.000 0.000  1 0.000
#> SRR1643477     2    0.00      1.000 0.000  1 0.000
#> SRR1643478     2    0.00      1.000 0.000  1 0.000
#> SRR1643479     2    0.00      1.000 0.000  1 0.000
#> SRR1643480     2    0.00      1.000 0.000  1 0.000
#> SRR1643481     2    0.00      1.000 0.000  1 0.000
#> SRR1643482     2    0.00      1.000 0.000  1 0.000
#> SRR1643483     2    0.00      1.000 0.000  1 0.000
#> SRR1643484     2    0.00      1.000 0.000  1 0.000
#> SRR1643485     2    0.00      1.000 0.000  1 0.000
#> SRR1643486     2    0.00      1.000 0.000  1 0.000
#> SRR1643487     2    0.00      1.000 0.000  1 0.000
#> SRR1643488     2    0.00      1.000 0.000  1 0.000
#> SRR1643489     2    0.00      1.000 0.000  1 0.000
#> SRR1643490     2    0.00      1.000 0.000  1 0.000
#> SRR1643491     2    0.00      1.000 0.000  1 0.000
#> SRR1643492     2    0.00      1.000 0.000  1 0.000
#> SRR1643493     2    0.00      1.000 0.000  1 0.000
#> SRR1643494     2    0.00      1.000 0.000  1 0.000
#> SRR1643495     2    0.00      1.000 0.000  1 0.000
#> SRR1643496     2    0.00      1.000 0.000  1 0.000
#> SRR1643497     2    0.00      1.000 0.000  1 0.000
#> SRR1643498     2    0.00      1.000 0.000  1 0.000
#> SRR1643499     2    0.00      1.000 0.000  1 0.000
#> SRR1643500     2    0.00      1.000 0.000  1 0.000
#> SRR1643501     2    0.00      1.000 0.000  1 0.000
#> SRR1643502     2    0.00      1.000 0.000  1 0.000
#> SRR1643503     2    0.00      1.000 0.000  1 0.000
#> SRR1643504     2    0.00      1.000 0.000  1 0.000
#> SRR1643505     2    0.00      1.000 0.000  1 0.000
#> SRR1643506     2    0.00      1.000 0.000  1 0.000
#> SRR1643507     2    0.00      1.000 0.000  1 0.000
#> SRR1643508     2    0.00      1.000 0.000  1 0.000
#> SRR1643509     2    0.00      1.000 0.000  1 0.000
#> SRR1643510     2    0.00      1.000 0.000  1 0.000
#> SRR1643511     2    0.00      1.000 0.000  1 0.000
#> SRR1643512     2    0.00      1.000 0.000  1 0.000
#> SRR1643513     2    0.00      1.000 0.000  1 0.000
#> SRR1643531     2    0.00      1.000 0.000  1 0.000
#> SRR1643532     2    0.00      1.000 0.000  1 0.000
#> SRR1643533     2    0.00      1.000 0.000  1 0.000
#> SRR1643534     2    0.00      1.000 0.000  1 0.000
#> SRR1643535     2    0.00      1.000 0.000  1 0.000
#> SRR1643536     2    0.00      1.000 0.000  1 0.000
#> SRR1643537     2    0.00      1.000 0.000  1 0.000
#> SRR1643538     2    0.00      1.000 0.000  1 0.000
#> SRR1643539     2    0.00      1.000 0.000  1 0.000
#> SRR1643540     2    0.00      1.000 0.000  1 0.000
#> SRR1643541     2    0.00      1.000 0.000  1 0.000
#> SRR1643542     2    0.00      1.000 0.000  1 0.000
#> SRR1643543     2    0.00      1.000 0.000  1 0.000
#> SRR1643544     2    0.00      1.000 0.000  1 0.000
#> SRR1643514     2    0.00      1.000 0.000  1 0.000
#> SRR1643515     2    0.00      1.000 0.000  1 0.000
#> SRR1643516     2    0.00      1.000 0.000  1 0.000
#> SRR1643517     2    0.00      1.000 0.000  1 0.000
#> SRR1643518     2    0.00      1.000 0.000  1 0.000
#> SRR1643519     2    0.00      1.000 0.000  1 0.000
#> SRR1643520     2    0.00      1.000 0.000  1 0.000
#> SRR1643521     2    0.00      1.000 0.000  1 0.000
#> SRR1643522     2    0.00      1.000 0.000  1 0.000
#> SRR1643523     2    0.00      1.000 0.000  1 0.000
#> SRR1643524     2    0.00      1.000 0.000  1 0.000
#> SRR1643525     2    0.00      1.000 0.000  1 0.000
#> SRR1643526     2    0.00      1.000 0.000  1 0.000
#> SRR1643527     2    0.00      1.000 0.000  1 0.000
#> SRR1643528     2    0.00      1.000 0.000  1 0.000
#> SRR1643529     2    0.00      1.000 0.000  1 0.000
#> SRR1643530     2    0.00      1.000 0.000  1 0.000
#> SRR1643545     2    0.00      1.000 0.000  1 0.000
#> SRR1643546     2    0.00      1.000 0.000  1 0.000
#> SRR1643547     2    0.00      1.000 0.000  1 0.000
#> SRR1643548     2    0.00      1.000 0.000  1 0.000
#> SRR1643549     2    0.00      1.000 0.000  1 0.000
#> SRR1643550     2    0.00      1.000 0.000  1 0.000
#> SRR1643551     2    0.00      1.000 0.000  1 0.000
#> SRR1643552     2    0.00      1.000 0.000  1 0.000
#> SRR1643553     2    0.00      1.000 0.000  1 0.000
#> SRR1643554     2    0.00      1.000 0.000  1 0.000
#> SRR1643555     2    0.00      1.000 0.000  1 0.000
#> SRR1643556     2    0.00      1.000 0.000  1 0.000
#> SRR1643558     2    0.00      1.000 0.000  1 0.000
#> SRR1643559     2    0.00      1.000 0.000  1 0.000
#> SRR1643560     2    0.00      1.000 0.000  1 0.000
#> SRR1643561     2    0.00      1.000 0.000  1 0.000
#> SRR1643562     2    0.00      1.000 0.000  1 0.000
#> SRR1643563     2    0.00      1.000 0.000  1 0.000
#> SRR1643564     2    0.00      1.000 0.000  1 0.000
#> SRR1643565     2    0.00      1.000 0.000  1 0.000
#> SRR1643566     2    0.00      1.000 0.000  1 0.000
#> SRR1643567     2    0.00      1.000 0.000  1 0.000
#> SRR1643568     2    0.00      1.000 0.000  1 0.000
#> SRR1643569     2    0.00      1.000 0.000  1 0.000
#> SRR1643570     2    0.00      1.000 0.000  1 0.000
#> SRR1643571     2    0.00      1.000 0.000  1 0.000
#> SRR1643572     2    0.00      1.000 0.000  1 0.000

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1   p2    p3    p4
#> SRR1643167     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643168     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643169     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643170     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643171     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643172     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643173     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643174     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643175     4  0.0707      0.942 0.020 0.00 0.000 0.980
#> SRR1643176     4  0.0817      0.940 0.024 0.00 0.000 0.976
#> SRR1643177     4  0.0469      0.947 0.012 0.00 0.000 0.988
#> SRR1643178     4  0.0817      0.940 0.024 0.00 0.000 0.976
#> SRR1643180     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643181     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643182     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643183     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643184     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643185     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643186     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643187     1  0.0817      0.954 0.976 0.00 0.000 0.024
#> SRR1643188     1  0.0817      0.954 0.976 0.00 0.000 0.024
#> SRR1643189     1  0.0817      0.954 0.976 0.00 0.000 0.024
#> SRR1643190     1  0.0817      0.954 0.976 0.00 0.000 0.024
#> SRR1643191     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643192     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643193     1  0.0921      0.951 0.972 0.00 0.000 0.028
#> SRR1643194     1  0.1118      0.944 0.964 0.00 0.000 0.036
#> SRR1643195     4  0.1792      0.908 0.068 0.00 0.000 0.932
#> SRR1643196     4  0.1792      0.908 0.068 0.00 0.000 0.932
#> SRR1643197     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643198     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643199     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643200     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643201     1  0.4040      0.722 0.752 0.00 0.000 0.248
#> SRR1643202     1  0.4072      0.715 0.748 0.00 0.000 0.252
#> SRR1643203     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643204     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643205     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643206     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643207     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643208     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643209     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643210     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643211     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643212     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643213     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643214     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643215     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643216     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643217     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643218     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643219     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643220     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643221     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643222     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643223     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643224     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643225     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643226     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643227     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643228     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643229     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643230     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643231     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643232     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643233     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643234     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643235     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643236     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643237     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643238     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643239     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643240     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643241     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643242     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643243     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643245     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643246     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643247     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643248     3  0.0000      0.993 0.000 0.00 1.000 0.000
#> SRR1643249     3  0.4382      0.580 0.296 0.00 0.704 0.000
#> SRR1643250     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643251     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643252     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643253     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643254     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643255     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643256     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643257     4  0.0188      0.951 0.004 0.00 0.000 0.996
#> SRR1643258     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643259     4  0.0469      0.946 0.012 0.00 0.000 0.988
#> SRR1643260     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643261     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643262     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643263     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643264     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643266     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643267     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643268     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643269     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643270     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643271     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643272     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643273     1  0.3907      0.751 0.768 0.00 0.000 0.232
#> SRR1643274     1  0.3907      0.751 0.768 0.00 0.000 0.232
#> SRR1643275     1  0.3907      0.751 0.768 0.00 0.000 0.232
#> SRR1643276     1  0.3907      0.751 0.768 0.00 0.000 0.232
#> SRR1643277     1  0.3907      0.751 0.768 0.00 0.000 0.232
#> SRR1643278     1  0.3907      0.751 0.768 0.00 0.000 0.232
#> SRR1643279     1  0.3907      0.751 0.768 0.00 0.000 0.232
#> SRR1643280     1  0.3907      0.751 0.768 0.00 0.000 0.232
#> SRR1643281     1  0.3907      0.751 0.768 0.00 0.000 0.232
#> SRR1643282     1  0.3907      0.751 0.768 0.00 0.000 0.232
#> SRR1643283     1  0.3907      0.751 0.768 0.00 0.000 0.232
#> SRR1643284     1  0.3907      0.751 0.768 0.00 0.000 0.232
#> SRR1643285     1  0.3907      0.751 0.768 0.00 0.000 0.232
#> SRR1643286     1  0.3907      0.751 0.768 0.00 0.000 0.232
#> SRR1643287     4  0.0188      0.951 0.004 0.00 0.000 0.996
#> SRR1643288     4  0.0188      0.951 0.004 0.00 0.000 0.996
#> SRR1643289     4  0.0188      0.951 0.004 0.00 0.000 0.996
#> SRR1643290     4  0.0188      0.951 0.004 0.00 0.000 0.996
#> SRR1643291     4  0.0188      0.951 0.004 0.00 0.000 0.996
#> SRR1643292     4  0.0188      0.951 0.004 0.00 0.000 0.996
#> SRR1643293     4  0.0188      0.951 0.004 0.00 0.000 0.996
#> SRR1643294     4  0.0188      0.951 0.004 0.00 0.000 0.996
#> SRR1643295     4  0.0188      0.951 0.004 0.00 0.000 0.996
#> SRR1643296     4  0.0188      0.951 0.004 0.00 0.000 0.996
#> SRR1643297     4  0.0188      0.951 0.004 0.00 0.000 0.996
#> SRR1643298     4  0.0188      0.951 0.004 0.00 0.000 0.996
#> SRR1643299     4  0.0188      0.951 0.004 0.00 0.000 0.996
#> SRR1643300     4  0.0188      0.951 0.004 0.00 0.000 0.996
#> SRR1643301     4  0.4164      0.662 0.264 0.00 0.000 0.736
#> SRR1643302     4  0.4543      0.540 0.324 0.00 0.000 0.676
#> SRR1643303     4  0.3975      0.705 0.240 0.00 0.000 0.760
#> SRR1643304     4  0.4331      0.617 0.288 0.00 0.000 0.712
#> SRR1643305     4  0.4222      0.648 0.272 0.00 0.000 0.728
#> SRR1643306     4  0.2921      0.843 0.140 0.00 0.000 0.860
#> SRR1643307     4  0.4543      0.540 0.324 0.00 0.000 0.676
#> SRR1643308     4  0.4103      0.676 0.256 0.00 0.000 0.744
#> SRR1643309     4  0.3873      0.722 0.228 0.00 0.000 0.772
#> SRR1643310     4  0.2647      0.865 0.120 0.00 0.000 0.880
#> SRR1643311     4  0.2973      0.838 0.144 0.00 0.000 0.856
#> SRR1643312     4  0.4406      0.592 0.300 0.00 0.000 0.700
#> SRR1643313     4  0.4454      0.576 0.308 0.00 0.000 0.692
#> SRR1643314     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643315     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643316     1  0.0817      0.954 0.976 0.00 0.000 0.024
#> SRR1643317     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643318     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643319     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643320     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643321     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643322     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643323     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643324     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643325     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643326     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643327     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643328     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643329     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643330     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643331     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643332     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643333     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643334     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643335     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643336     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643337     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643338     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643339     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643340     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643341     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643342     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643343     4  0.2589      0.876 0.116 0.00 0.000 0.884
#> SRR1643344     4  0.2647      0.871 0.120 0.00 0.000 0.880
#> SRR1643345     4  0.2814      0.861 0.132 0.00 0.000 0.868
#> SRR1643346     4  0.3123      0.834 0.156 0.00 0.000 0.844
#> SRR1643347     4  0.2921      0.853 0.140 0.00 0.000 0.860
#> SRR1643348     4  0.2921      0.852 0.140 0.00 0.000 0.860
#> SRR1643349     4  0.2281      0.891 0.096 0.00 0.000 0.904
#> SRR1643350     4  0.3024      0.844 0.148 0.00 0.000 0.852
#> SRR1643351     4  0.3074      0.841 0.152 0.00 0.000 0.848
#> SRR1643352     4  0.2760      0.865 0.128 0.00 0.000 0.872
#> SRR1643353     4  0.2647      0.872 0.120 0.00 0.000 0.880
#> SRR1643354     4  0.2469      0.882 0.108 0.00 0.000 0.892
#> SRR1643355     4  0.2530      0.879 0.112 0.00 0.000 0.888
#> SRR1643356     4  0.2704      0.868 0.124 0.00 0.000 0.876
#> SRR1643357     4  0.2589      0.875 0.116 0.00 0.000 0.884
#> SRR1643358     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643359     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643360     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643361     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643362     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643363     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643364     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643365     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643366     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643367     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643368     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643369     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643370     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643371     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643372     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643373     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643374     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643375     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643376     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643377     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643378     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643379     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643380     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643381     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643382     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643383     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643384     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643385     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643386     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643387     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643388     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643389     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643390     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643391     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643392     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643393     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643394     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643395     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643396     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643397     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643398     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643399     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643400     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643401     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643402     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643403     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643404     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643405     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643406     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643407     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643408     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643409     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643410     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643411     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643412     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643413     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643414     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643415     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643416     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643417     1  0.0707      0.957 0.980 0.00 0.000 0.020
#> SRR1643418     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643419     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643420     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643421     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643422     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643423     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643424     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643425     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643426     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643427     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643428     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643429     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643430     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643431     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643432     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643433     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643434     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643435     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643436     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643437     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643438     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643439     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643440     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643441     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643442     4  0.0000      0.952 0.000 0.00 0.000 1.000
#> SRR1643443     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643444     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643445     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643446     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643447     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643448     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643449     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643450     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643451     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643452     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643453     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643454     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643455     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643456     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643457     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643458     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643459     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643460     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643461     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643462     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643463     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643464     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643466     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643467     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643468     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643469     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643470     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643471     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643472     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643473     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643474     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643475     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643477     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643478     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643479     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643480     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643481     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643482     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643483     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643484     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643485     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643486     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643487     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643488     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643489     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643490     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643491     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643492     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643493     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643494     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643495     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643496     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643497     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643498     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643499     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643500     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643501     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643502     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643503     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643504     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643505     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643506     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643507     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643508     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643509     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643510     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643511     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643512     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643513     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643531     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643532     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643533     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643534     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643535     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643536     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643537     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643538     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643539     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643540     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643541     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643542     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643543     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643544     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643514     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643515     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643516     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643517     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643518     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643519     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643520     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643521     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643522     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643523     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643524     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643525     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643526     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643527     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643528     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643529     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643530     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643545     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643546     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643547     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643548     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643549     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643550     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643551     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643552     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643553     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643554     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643555     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643556     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643558     2  0.0000      0.992 0.000 1.00 0.000 0.000
#> SRR1643559     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643560     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643561     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643562     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643563     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643564     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643565     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643566     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643567     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643568     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643569     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643570     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643571     2  0.0707      0.990 0.020 0.98 0.000 0.000
#> SRR1643572     2  0.0707      0.990 0.020 0.98 0.000 0.000

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1    p2    p3    p4    p5
#> SRR1643167     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643168     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643169     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643170     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643171     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643172     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643173     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643174     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643175     4  0.0609     0.9410 0.020 0.000 0.000 0.980 0.000
#> SRR1643176     4  0.0703     0.9386 0.024 0.000 0.000 0.976 0.000
#> SRR1643177     4  0.0404     0.9454 0.012 0.000 0.000 0.988 0.000
#> SRR1643178     4  0.0703     0.9386 0.024 0.000 0.000 0.976 0.000
#> SRR1643180     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643181     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643182     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643183     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643184     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643185     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643186     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643187     1  0.0324     0.9519 0.992 0.000 0.000 0.004 0.004
#> SRR1643188     1  0.0324     0.9519 0.992 0.000 0.000 0.004 0.004
#> SRR1643189     1  0.0324     0.9519 0.992 0.000 0.000 0.004 0.004
#> SRR1643190     1  0.0324     0.9519 0.992 0.000 0.000 0.004 0.004
#> SRR1643191     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643192     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643193     1  0.0451     0.9492 0.988 0.000 0.000 0.008 0.004
#> SRR1643194     1  0.0671     0.9422 0.980 0.000 0.000 0.016 0.004
#> SRR1643195     4  0.1704     0.9055 0.068 0.000 0.000 0.928 0.004
#> SRR1643196     4  0.1704     0.9055 0.068 0.000 0.000 0.928 0.004
#> SRR1643197     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643198     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643199     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643200     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643201     1  0.3521     0.7228 0.764 0.000 0.000 0.232 0.004
#> SRR1643202     1  0.3521     0.7221 0.764 0.000 0.000 0.232 0.004
#> SRR1643203     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643204     1  0.0162     0.9545 0.996 0.000 0.000 0.000 0.004
#> SRR1643205     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643206     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643207     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643208     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643209     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643210     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643211     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643212     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643213     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643214     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643215     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643216     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643217     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643218     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643219     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643220     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643221     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643222     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643223     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643224     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643225     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643226     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643227     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643228     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643229     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643230     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643231     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643232     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643233     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643234     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643235     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643236     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643237     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643238     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643239     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643240     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643241     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643242     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643243     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643245     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643246     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643247     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643248     3  0.0000     0.9920 0.000 0.000 1.000 0.000 0.000
#> SRR1643249     3  0.3906     0.5819 0.292 0.000 0.704 0.000 0.004
#> SRR1643250     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643251     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643252     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643253     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643254     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643255     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643256     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643257     4  0.0162     0.9494 0.004 0.000 0.000 0.996 0.000
#> SRR1643258     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643259     4  0.0404     0.9450 0.012 0.000 0.000 0.988 0.000
#> SRR1643260     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643261     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643262     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643263     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643264     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643266     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643267     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643268     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643269     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643270     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643271     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643272     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643273     1  0.3242     0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643274     1  0.3242     0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643275     1  0.3242     0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643276     1  0.3242     0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643277     1  0.3242     0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643278     1  0.3242     0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643279     1  0.3242     0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643280     1  0.3242     0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643281     1  0.3242     0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643282     1  0.3242     0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643283     1  0.3242     0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643284     1  0.3242     0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643285     1  0.3242     0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643286     1  0.3242     0.7516 0.784 0.000 0.000 0.216 0.000
#> SRR1643287     4  0.0162     0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643288     4  0.0162     0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643289     4  0.0162     0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643290     4  0.0162     0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643291     4  0.0162     0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643292     4  0.0162     0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643293     4  0.0162     0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643294     4  0.0162     0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643295     4  0.0162     0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643296     4  0.0162     0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643297     4  0.0162     0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643298     4  0.0162     0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643299     4  0.0162     0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643300     4  0.0162     0.9496 0.004 0.000 0.000 0.996 0.000
#> SRR1643301     4  0.3612     0.6639 0.268 0.000 0.000 0.732 0.000
#> SRR1643302     4  0.3932     0.5447 0.328 0.000 0.000 0.672 0.000
#> SRR1643303     4  0.3452     0.7054 0.244 0.000 0.000 0.756 0.000
#> SRR1643304     4  0.3774     0.6119 0.296 0.000 0.000 0.704 0.000
#> SRR1643305     4  0.3661     0.6500 0.276 0.000 0.000 0.724 0.000
#> SRR1643306     4  0.2561     0.8410 0.144 0.000 0.000 0.856 0.000
#> SRR1643307     4  0.3966     0.5264 0.336 0.000 0.000 0.664 0.000
#> SRR1643308     4  0.3561     0.6777 0.260 0.000 0.000 0.740 0.000
#> SRR1643309     4  0.3366     0.7229 0.232 0.000 0.000 0.768 0.000
#> SRR1643310     4  0.2280     0.8647 0.120 0.000 0.000 0.880 0.000
#> SRR1643311     4  0.2605     0.8361 0.148 0.000 0.000 0.852 0.000
#> SRR1643312     4  0.3816     0.5960 0.304 0.000 0.000 0.696 0.000
#> SRR1643313     4  0.3876     0.5711 0.316 0.000 0.000 0.684 0.000
#> SRR1643314     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643315     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643316     1  0.0162     0.9530 0.996 0.000 0.000 0.004 0.000
#> SRR1643317     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643318     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643319     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643320     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643321     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643322     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643323     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643324     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643325     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643326     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643327     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643328     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643329     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643330     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643331     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643332     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643333     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643334     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643335     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643336     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643337     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643338     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643339     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643340     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643341     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643342     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643343     4  0.2280     0.8710 0.120 0.000 0.000 0.880 0.000
#> SRR1643344     4  0.2329     0.8665 0.124 0.000 0.000 0.876 0.000
#> SRR1643345     4  0.2471     0.8569 0.136 0.000 0.000 0.864 0.000
#> SRR1643346     4  0.2732     0.8315 0.160 0.000 0.000 0.840 0.000
#> SRR1643347     4  0.2561     0.8500 0.144 0.000 0.000 0.856 0.000
#> SRR1643348     4  0.2561     0.8483 0.144 0.000 0.000 0.856 0.000
#> SRR1643349     4  0.2020     0.8865 0.100 0.000 0.000 0.900 0.000
#> SRR1643350     4  0.2648     0.8406 0.152 0.000 0.000 0.848 0.000
#> SRR1643351     4  0.2690     0.8381 0.156 0.000 0.000 0.844 0.000
#> SRR1643352     4  0.2424     0.8605 0.132 0.000 0.000 0.868 0.000
#> SRR1643353     4  0.2329     0.8674 0.124 0.000 0.000 0.876 0.000
#> SRR1643354     4  0.2179     0.8773 0.112 0.000 0.000 0.888 0.000
#> SRR1643355     4  0.2179     0.8776 0.112 0.000 0.000 0.888 0.000
#> SRR1643356     4  0.2377     0.8634 0.128 0.000 0.000 0.872 0.000
#> SRR1643357     4  0.2280     0.8708 0.120 0.000 0.000 0.880 0.000
#> SRR1643358     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643359     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643360     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643361     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643362     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643363     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643364     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643365     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643366     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643367     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643368     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643369     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643370     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643371     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643372     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643373     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643374     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643375     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643376     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643377     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643378     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643379     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643380     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643381     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643382     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643383     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643384     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643385     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643386     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643387     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643388     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643389     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643390     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643391     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643392     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643393     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643394     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643395     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643396     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643397     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643398     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643399     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643400     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643401     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643402     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643403     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643404     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643405     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643406     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643407     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643408     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643409     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643410     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643411     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643412     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643413     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643414     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643415     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643416     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643417     1  0.0000     0.9555 1.000 0.000 0.000 0.000 0.000
#> SRR1643418     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643419     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643420     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643421     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643422     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643423     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643424     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643425     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643426     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643427     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643428     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643429     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643430     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643431     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643432     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643433     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643434     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643435     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643436     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643437     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643438     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643439     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643440     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643441     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643442     4  0.0000     0.9509 0.000 0.000 0.000 1.000 0.000
#> SRR1643443     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643444     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643445     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643446     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643447     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643448     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643449     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643450     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643451     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643452     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643453     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643454     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643455     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643456     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643457     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643458     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643459     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643460     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643461     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643462     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643463     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643464     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643466     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643467     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643468     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643469     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643470     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643471     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643472     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643473     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643474     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643475     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643477     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643478     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643479     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643480     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643481     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643482     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643483     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643484     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643485     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643486     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643487     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643488     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643489     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643490     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643491     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643492     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643493     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643494     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643495     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643496     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643497     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643498     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643499     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643500     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643501     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643502     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643503     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643504     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643505     5  0.4305     0.0552 0.000 0.488 0.000 0.000 0.512
#> SRR1643506     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643507     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643508     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643509     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643510     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643511     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643512     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643513     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000
#> SRR1643531     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643532     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643533     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643534     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643535     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643536     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643537     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643538     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643539     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643540     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643541     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643542     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643543     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643544     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643514     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643515     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643516     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643517     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643518     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643519     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643520     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643521     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643522     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643523     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643524     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643525     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643526     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643527     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643528     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643529     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643530     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643545     2  0.0162     0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643546     2  0.0162     0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643547     2  0.0162     0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643548     2  0.0162     0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643549     2  0.0162     0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643550     2  0.0510     0.9841 0.000 0.984 0.000 0.000 0.016
#> SRR1643551     2  0.0290     0.9924 0.000 0.992 0.000 0.000 0.008
#> SRR1643552     2  0.0162     0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643553     2  0.0162     0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643554     2  0.0162     0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643555     2  0.0162     0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643556     2  0.0162     0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643558     2  0.0162     0.9962 0.000 0.996 0.000 0.000 0.004
#> SRR1643559     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643560     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643561     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643562     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643563     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643564     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643565     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643566     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643567     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643568     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643569     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643570     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643571     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996
#> SRR1643572     5  0.0162     0.9907 0.000 0.004 0.000 0.000 0.996

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2    p3    p4    p5    p6
#> SRR1643167     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643168     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643169     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643170     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643171     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643172     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643173     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643174     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643175     4  0.1584     0.8176 0.008 0.000 0.000 0.928 0.000 0.064
#> SRR1643176     4  0.1625     0.8192 0.012 0.000 0.000 0.928 0.000 0.060
#> SRR1643177     4  0.1411     0.8212 0.004 0.000 0.000 0.936 0.000 0.060
#> SRR1643178     4  0.1333     0.8283 0.008 0.000 0.000 0.944 0.000 0.048
#> SRR1643180     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643181     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643182     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643183     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643184     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643185     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643186     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643187     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643188     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643189     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643190     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643191     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643192     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643193     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643194     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643195     6  0.2784     0.5211 0.028 0.000 0.000 0.124 0.000 0.848
#> SRR1643196     6  0.2909     0.5210 0.028 0.000 0.000 0.136 0.000 0.836
#> SRR1643197     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643198     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643199     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643200     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643201     6  0.3684     0.9049 0.332 0.000 0.000 0.004 0.000 0.664
#> SRR1643202     6  0.3756     0.9356 0.352 0.000 0.000 0.004 0.000 0.644
#> SRR1643203     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643204     6  0.3672     0.9588 0.368 0.000 0.000 0.000 0.000 0.632
#> SRR1643205     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643206     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643207     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643208     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643209     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643210     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643211     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643212     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643213     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643214     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643215     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643216     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643217     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643218     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643219     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643220     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643221     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643222     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643223     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643224     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643225     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643226     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643227     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643228     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643229     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643230     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643231     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643232     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643233     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643234     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643235     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643236     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643237     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643238     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643239     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643240     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643241     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643242     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643243     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643245     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643246     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643247     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643248     3  0.0000     0.9904 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643249     3  0.3817     0.3456 0.000 0.000 0.568 0.000 0.000 0.432
#> SRR1643250     4  0.0146     0.8502 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643251     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643252     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643253     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643254     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643255     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643256     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643257     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643258     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643259     4  0.0146     0.8502 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643260     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643261     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643262     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643263     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643264     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643266     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643267     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643268     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643269     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643270     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643271     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643272     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643273     1  0.1610     0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643274     1  0.1610     0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643275     1  0.1610     0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643276     1  0.1610     0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643277     1  0.1610     0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643278     1  0.1610     0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643279     1  0.1610     0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643280     1  0.1610     0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643281     1  0.1610     0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643282     1  0.1610     0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643283     1  0.1610     0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643284     1  0.1610     0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643285     1  0.1610     0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643286     1  0.1610     0.8510 0.916 0.000 0.000 0.084 0.000 0.000
#> SRR1643287     4  0.3221     0.7907 0.000 0.000 0.000 0.736 0.000 0.264
#> SRR1643288     4  0.3266     0.7872 0.000 0.000 0.000 0.728 0.000 0.272
#> SRR1643289     4  0.3101     0.7977 0.000 0.000 0.000 0.756 0.000 0.244
#> SRR1643290     4  0.3221     0.7901 0.000 0.000 0.000 0.736 0.000 0.264
#> SRR1643291     4  0.3428     0.7724 0.000 0.000 0.000 0.696 0.000 0.304
#> SRR1643292     4  0.3076     0.7989 0.000 0.000 0.000 0.760 0.000 0.240
#> SRR1643293     4  0.2969     0.8036 0.000 0.000 0.000 0.776 0.000 0.224
#> SRR1643294     4  0.3050     0.8001 0.000 0.000 0.000 0.764 0.000 0.236
#> SRR1643295     4  0.3244     0.7890 0.000 0.000 0.000 0.732 0.000 0.268
#> SRR1643296     4  0.3221     0.7908 0.000 0.000 0.000 0.736 0.000 0.264
#> SRR1643297     4  0.3101     0.7975 0.000 0.000 0.000 0.756 0.000 0.244
#> SRR1643298     4  0.3126     0.7962 0.000 0.000 0.000 0.752 0.000 0.248
#> SRR1643299     4  0.3076     0.7989 0.000 0.000 0.000 0.760 0.000 0.240
#> SRR1643300     4  0.3198     0.7920 0.000 0.000 0.000 0.740 0.000 0.260
#> SRR1643301     4  0.2454     0.7653 0.160 0.000 0.000 0.840 0.000 0.000
#> SRR1643302     4  0.3151     0.6463 0.252 0.000 0.000 0.748 0.000 0.000
#> SRR1643303     4  0.2527     0.7566 0.168 0.000 0.000 0.832 0.000 0.000
#> SRR1643304     4  0.2697     0.7378 0.188 0.000 0.000 0.812 0.000 0.000
#> SRR1643305     4  0.2491     0.7626 0.164 0.000 0.000 0.836 0.000 0.000
#> SRR1643306     4  0.1714     0.8151 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643307     4  0.2941     0.7043 0.220 0.000 0.000 0.780 0.000 0.000
#> SRR1643308     4  0.2300     0.7782 0.144 0.000 0.000 0.856 0.000 0.000
#> SRR1643309     4  0.2219     0.7843 0.136 0.000 0.000 0.864 0.000 0.000
#> SRR1643310     4  0.1444     0.8254 0.072 0.000 0.000 0.928 0.000 0.000
#> SRR1643311     4  0.1765     0.8129 0.096 0.000 0.000 0.904 0.000 0.000
#> SRR1643312     4  0.2912     0.7028 0.216 0.000 0.000 0.784 0.000 0.000
#> SRR1643313     4  0.2762     0.7284 0.196 0.000 0.000 0.804 0.000 0.000
#> SRR1643314     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643315     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643316     1  0.0146     0.9598 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643317     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643318     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643319     1  0.0146     0.9597 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643320     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643321     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643322     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643323     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643324     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643325     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643326     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643327     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643328     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643329     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643330     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643331     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643332     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643333     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643334     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643335     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643336     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643337     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643338     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643339     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643340     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643341     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643342     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643343     4  0.3126     0.6862 0.248 0.000 0.000 0.752 0.000 0.000
#> SRR1643344     4  0.3101     0.6903 0.244 0.000 0.000 0.756 0.000 0.000
#> SRR1643345     4  0.3126     0.6864 0.248 0.000 0.000 0.752 0.000 0.000
#> SRR1643346     4  0.3221     0.6686 0.264 0.000 0.000 0.736 0.000 0.000
#> SRR1643347     4  0.3175     0.6766 0.256 0.000 0.000 0.744 0.000 0.000
#> SRR1643348     4  0.3151     0.6820 0.252 0.000 0.000 0.748 0.000 0.000
#> SRR1643349     4  0.3050     0.6971 0.236 0.000 0.000 0.764 0.000 0.000
#> SRR1643350     4  0.3198     0.6733 0.260 0.000 0.000 0.740 0.000 0.000
#> SRR1643351     4  0.3126     0.6856 0.248 0.000 0.000 0.752 0.000 0.000
#> SRR1643352     4  0.3151     0.6820 0.252 0.000 0.000 0.748 0.000 0.000
#> SRR1643353     4  0.3126     0.6862 0.248 0.000 0.000 0.752 0.000 0.000
#> SRR1643354     4  0.3076     0.6938 0.240 0.000 0.000 0.760 0.000 0.000
#> SRR1643355     4  0.3050     0.6984 0.236 0.000 0.000 0.764 0.000 0.000
#> SRR1643356     4  0.3126     0.6863 0.248 0.000 0.000 0.752 0.000 0.000
#> SRR1643357     4  0.3101     0.6901 0.244 0.000 0.000 0.756 0.000 0.000
#> SRR1643358     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643359     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643360     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643361     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643362     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643363     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643364     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643365     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643366     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643367     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643368     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643369     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643370     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643371     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643372     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643373     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643374     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643375     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643376     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643377     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643378     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643379     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643380     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643381     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643382     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643383     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643384     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643385     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643386     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643387     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643388     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643389     4  0.0000     0.8517 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643390     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643391     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643392     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643393     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643394     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643395     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643396     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643397     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643398     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643399     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643400     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643401     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643402     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643403     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643404     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643405     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643406     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643407     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643408     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643409     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643410     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643411     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643412     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643413     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643414     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643415     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643416     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643417     1  0.0000     0.9647 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643418     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643419     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643420     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643421     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643422     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643423     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643424     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643425     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643426     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643427     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643428     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643429     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643430     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643431     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643432     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643433     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643434     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643435     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643436     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643437     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643438     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643439     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643440     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643441     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643442     4  0.3672     0.7403 0.000 0.000 0.000 0.632 0.000 0.368
#> SRR1643443     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643444     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643445     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643446     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643447     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643448     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643449     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643450     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643451     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643452     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643453     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643454     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643455     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643456     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643457     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643458     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643459     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643460     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643461     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643462     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643463     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643464     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643466     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643467     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643468     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643469     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643470     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643471     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643472     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643473     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643474     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643475     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643477     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643478     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643479     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643480     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643481     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643482     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643483     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643484     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643485     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643486     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643487     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643488     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643489     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643490     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643491     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643492     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643493     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643494     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643495     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643496     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643497     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643498     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643499     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643500     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643501     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643502     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643503     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643504     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643505     5  0.3866     0.0626 0.000 0.484 0.000 0.000 0.516 0.000
#> SRR1643506     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643507     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643508     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643509     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643510     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643511     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643512     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643513     2  0.0000     0.9989 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643531     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643532     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643533     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643534     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643535     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643536     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643537     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643538     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643539     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643540     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643541     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643542     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643543     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643544     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643514     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643515     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643516     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643517     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643518     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643519     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643520     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643521     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643522     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643523     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643524     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643525     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643526     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643527     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643528     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643529     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643530     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643545     2  0.0146     0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643546     2  0.0146     0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643547     2  0.0146     0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643548     2  0.0146     0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643549     2  0.0146     0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643550     2  0.0458     0.9840 0.000 0.984 0.000 0.000 0.016 0.000
#> SRR1643551     2  0.0260     0.9924 0.000 0.992 0.000 0.000 0.008 0.000
#> SRR1643552     2  0.0146     0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643553     2  0.0146     0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643554     2  0.0146     0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643555     2  0.0146     0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643556     2  0.0146     0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643558     2  0.0146     0.9962 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643559     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643560     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643561     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643562     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643563     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643564     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643565     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643566     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643567     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643568     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643569     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643570     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643571     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643572     5  0.0000     0.9906 0.000 0.000 0.000 0.000 1.000 0.000

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-SD-pam-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-SD-pam-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-SD-pam-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-SD-pam-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-SD-pam-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-SD-pam-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-SD-pam-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-SD-pam-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-SD-pam-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-SD-pam-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-SD-pam-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-SD-pam-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-SD-pam-get-signatures-3

get_signatures(res, k = 5)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-SD-pam-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-SD-pam-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-SD-pam-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-SD-pam-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-SD-pam-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-SD-pam-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-SD-pam-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk SD-pam-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-SD-pam-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-SD-pam-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-SD-pam-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-SD-pam-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-SD-pam-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk SD-pam-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


SD:mclust**

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["SD", "mclust"]
# you can also extract it by
# res = res_list["SD:mclust"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'SD' method.
#>   Subgroups are detected by 'mclust' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 6.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk SD-mclust-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk SD-mclust-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000         0.4350 0.566   0.566
#> 3 3 1.000           0.996       0.998         0.2939 0.874   0.777
#> 4 4 0.977           0.941       0.968         0.2623 0.840   0.637
#> 5 5 0.955           0.881       0.950         0.0796 0.937   0.780
#> 6 6 0.968           0.902       0.946         0.0386 0.953   0.803

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 6
#> attr(,"optional")
#> [1] 2 3 4 5

There is also optional best \(k\) = 2 3 4 5 that is worth to check.

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1 p2    p3
#> SRR1643167     1   0.141      0.967 0.964  0 0.036
#> SRR1643168     1   0.141      0.967 0.964  0 0.036
#> SRR1643169     1   0.141      0.967 0.964  0 0.036
#> SRR1643170     1   0.141      0.967 0.964  0 0.036
#> SRR1643171     1   0.000      0.996 1.000  0 0.000
#> SRR1643172     1   0.000      0.996 1.000  0 0.000
#> SRR1643173     1   0.000      0.996 1.000  0 0.000
#> SRR1643174     1   0.000      0.996 1.000  0 0.000
#> SRR1643175     1   0.000      0.996 1.000  0 0.000
#> SRR1643176     1   0.000      0.996 1.000  0 0.000
#> SRR1643177     1   0.000      0.996 1.000  0 0.000
#> SRR1643178     1   0.000      0.996 1.000  0 0.000
#> SRR1643180     1   0.141      0.967 0.964  0 0.036
#> SRR1643181     1   0.141      0.967 0.964  0 0.036
#> SRR1643182     1   0.141      0.967 0.964  0 0.036
#> SRR1643183     1   0.129      0.970 0.968  0 0.032
#> SRR1643184     1   0.129      0.970 0.968  0 0.032
#> SRR1643185     1   0.129      0.970 0.968  0 0.032
#> SRR1643186     1   0.129      0.970 0.968  0 0.032
#> SRR1643187     1   0.141      0.967 0.964  0 0.036
#> SRR1643188     1   0.141      0.967 0.964  0 0.036
#> SRR1643189     1   0.141      0.967 0.964  0 0.036
#> SRR1643190     1   0.141      0.967 0.964  0 0.036
#> SRR1643191     1   0.141      0.967 0.964  0 0.036
#> SRR1643192     1   0.141      0.967 0.964  0 0.036
#> SRR1643193     1   0.141      0.967 0.964  0 0.036
#> SRR1643194     1   0.141      0.967 0.964  0 0.036
#> SRR1643195     1   0.000      0.996 1.000  0 0.000
#> SRR1643196     1   0.000      0.996 1.000  0 0.000
#> SRR1643197     1   0.000      0.996 1.000  0 0.000
#> SRR1643198     1   0.000      0.996 1.000  0 0.000
#> SRR1643199     1   0.141      0.967 0.964  0 0.036
#> SRR1643200     1   0.141      0.967 0.964  0 0.036
#> SRR1643201     1   0.141      0.967 0.964  0 0.036
#> SRR1643202     1   0.141      0.967 0.964  0 0.036
#> SRR1643203     1   0.141      0.967 0.964  0 0.036
#> SRR1643204     1   0.141      0.967 0.964  0 0.036
#> SRR1643205     3   0.000      1.000 0.000  0 1.000
#> SRR1643206     3   0.000      1.000 0.000  0 1.000
#> SRR1643207     3   0.000      1.000 0.000  0 1.000
#> SRR1643208     3   0.000      1.000 0.000  0 1.000
#> SRR1643209     3   0.000      1.000 0.000  0 1.000
#> SRR1643210     3   0.000      1.000 0.000  0 1.000
#> SRR1643211     3   0.000      1.000 0.000  0 1.000
#> SRR1643212     3   0.000      1.000 0.000  0 1.000
#> SRR1643213     3   0.000      1.000 0.000  0 1.000
#> SRR1643214     3   0.000      1.000 0.000  0 1.000
#> SRR1643215     3   0.000      1.000 0.000  0 1.000
#> SRR1643216     3   0.000      1.000 0.000  0 1.000
#> SRR1643217     3   0.000      1.000 0.000  0 1.000
#> SRR1643218     3   0.000      1.000 0.000  0 1.000
#> SRR1643219     3   0.000      1.000 0.000  0 1.000
#> SRR1643220     3   0.000      1.000 0.000  0 1.000
#> SRR1643221     3   0.000      1.000 0.000  0 1.000
#> SRR1643222     3   0.000      1.000 0.000  0 1.000
#> SRR1643223     3   0.000      1.000 0.000  0 1.000
#> SRR1643224     3   0.000      1.000 0.000  0 1.000
#> SRR1643225     3   0.000      1.000 0.000  0 1.000
#> SRR1643226     3   0.000      1.000 0.000  0 1.000
#> SRR1643227     3   0.000      1.000 0.000  0 1.000
#> SRR1643228     3   0.000      1.000 0.000  0 1.000
#> SRR1643229     3   0.000      1.000 0.000  0 1.000
#> SRR1643230     3   0.000      1.000 0.000  0 1.000
#> SRR1643231     3   0.000      1.000 0.000  0 1.000
#> SRR1643232     3   0.000      1.000 0.000  0 1.000
#> SRR1643233     3   0.000      1.000 0.000  0 1.000
#> SRR1643234     3   0.000      1.000 0.000  0 1.000
#> SRR1643235     3   0.000      1.000 0.000  0 1.000
#> SRR1643236     3   0.000      1.000 0.000  0 1.000
#> SRR1643237     3   0.000      1.000 0.000  0 1.000
#> SRR1643238     3   0.000      1.000 0.000  0 1.000
#> SRR1643239     3   0.000      1.000 0.000  0 1.000
#> SRR1643240     3   0.000      1.000 0.000  0 1.000
#> SRR1643241     3   0.000      1.000 0.000  0 1.000
#> SRR1643242     3   0.000      1.000 0.000  0 1.000
#> SRR1643243     3   0.000      1.000 0.000  0 1.000
#> SRR1643245     3   0.000      1.000 0.000  0 1.000
#> SRR1643246     3   0.000      1.000 0.000  0 1.000
#> SRR1643247     3   0.000      1.000 0.000  0 1.000
#> SRR1643248     3   0.000      1.000 0.000  0 1.000
#> SRR1643249     3   0.000      1.000 0.000  0 1.000
#> SRR1643250     1   0.000      0.996 1.000  0 0.000
#> SRR1643251     1   0.000      0.996 1.000  0 0.000
#> SRR1643252     1   0.000      0.996 1.000  0 0.000
#> SRR1643253     1   0.000      0.996 1.000  0 0.000
#> SRR1643254     1   0.000      0.996 1.000  0 0.000
#> SRR1643255     1   0.000      0.996 1.000  0 0.000
#> SRR1643256     1   0.000      0.996 1.000  0 0.000
#> SRR1643257     1   0.000      0.996 1.000  0 0.000
#> SRR1643258     1   0.000      0.996 1.000  0 0.000
#> SRR1643259     1   0.000      0.996 1.000  0 0.000
#> SRR1643260     1   0.000      0.996 1.000  0 0.000
#> SRR1643261     1   0.000      0.996 1.000  0 0.000
#> SRR1643262     1   0.000      0.996 1.000  0 0.000
#> SRR1643263     1   0.000      0.996 1.000  0 0.000
#> SRR1643264     1   0.000      0.996 1.000  0 0.000
#> SRR1643266     1   0.000      0.996 1.000  0 0.000
#> SRR1643267     1   0.000      0.996 1.000  0 0.000
#> SRR1643268     1   0.000      0.996 1.000  0 0.000
#> SRR1643269     1   0.000      0.996 1.000  0 0.000
#> SRR1643270     1   0.000      0.996 1.000  0 0.000
#> SRR1643271     1   0.000      0.996 1.000  0 0.000
#> SRR1643272     1   0.000      0.996 1.000  0 0.000
#> SRR1643273     1   0.000      0.996 1.000  0 0.000
#> SRR1643274     1   0.000      0.996 1.000  0 0.000
#> SRR1643275     1   0.000      0.996 1.000  0 0.000
#> SRR1643276     1   0.000      0.996 1.000  0 0.000
#> SRR1643277     1   0.000      0.996 1.000  0 0.000
#> SRR1643278     1   0.000      0.996 1.000  0 0.000
#> SRR1643279     1   0.000      0.996 1.000  0 0.000
#> SRR1643280     1   0.000      0.996 1.000  0 0.000
#> SRR1643281     1   0.000      0.996 1.000  0 0.000
#> SRR1643282     1   0.000      0.996 1.000  0 0.000
#> SRR1643283     1   0.000      0.996 1.000  0 0.000
#> SRR1643284     1   0.000      0.996 1.000  0 0.000
#> SRR1643285     1   0.000      0.996 1.000  0 0.000
#> SRR1643286     1   0.000      0.996 1.000  0 0.000
#> SRR1643287     1   0.000      0.996 1.000  0 0.000
#> SRR1643288     1   0.000      0.996 1.000  0 0.000
#> SRR1643289     1   0.000      0.996 1.000  0 0.000
#> SRR1643290     1   0.000      0.996 1.000  0 0.000
#> SRR1643291     1   0.000      0.996 1.000  0 0.000
#> SRR1643292     1   0.000      0.996 1.000  0 0.000
#> SRR1643293     1   0.000      0.996 1.000  0 0.000
#> SRR1643294     1   0.000      0.996 1.000  0 0.000
#> SRR1643295     1   0.000      0.996 1.000  0 0.000
#> SRR1643296     1   0.000      0.996 1.000  0 0.000
#> SRR1643297     1   0.000      0.996 1.000  0 0.000
#> SRR1643298     1   0.000      0.996 1.000  0 0.000
#> SRR1643299     1   0.000      0.996 1.000  0 0.000
#> SRR1643300     1   0.000      0.996 1.000  0 0.000
#> SRR1643301     1   0.000      0.996 1.000  0 0.000
#> SRR1643302     1   0.000      0.996 1.000  0 0.000
#> SRR1643303     1   0.000      0.996 1.000  0 0.000
#> SRR1643304     1   0.000      0.996 1.000  0 0.000
#> SRR1643305     1   0.000      0.996 1.000  0 0.000
#> SRR1643306     1   0.000      0.996 1.000  0 0.000
#> SRR1643307     1   0.000      0.996 1.000  0 0.000
#> SRR1643308     1   0.000      0.996 1.000  0 0.000
#> SRR1643309     1   0.000      0.996 1.000  0 0.000
#> SRR1643310     1   0.000      0.996 1.000  0 0.000
#> SRR1643311     1   0.000      0.996 1.000  0 0.000
#> SRR1643312     1   0.000      0.996 1.000  0 0.000
#> SRR1643313     1   0.000      0.996 1.000  0 0.000
#> SRR1643314     1   0.000      0.996 1.000  0 0.000
#> SRR1643315     1   0.000      0.996 1.000  0 0.000
#> SRR1643316     1   0.000      0.996 1.000  0 0.000
#> SRR1643317     1   0.000      0.996 1.000  0 0.000
#> SRR1643318     1   0.000      0.996 1.000  0 0.000
#> SRR1643319     1   0.000      0.996 1.000  0 0.000
#> SRR1643320     1   0.000      0.996 1.000  0 0.000
#> SRR1643321     1   0.000      0.996 1.000  0 0.000
#> SRR1643322     1   0.000      0.996 1.000  0 0.000
#> SRR1643323     1   0.000      0.996 1.000  0 0.000
#> SRR1643324     1   0.000      0.996 1.000  0 0.000
#> SRR1643325     1   0.000      0.996 1.000  0 0.000
#> SRR1643326     1   0.000      0.996 1.000  0 0.000
#> SRR1643327     1   0.000      0.996 1.000  0 0.000
#> SRR1643328     1   0.000      0.996 1.000  0 0.000
#> SRR1643329     1   0.000      0.996 1.000  0 0.000
#> SRR1643330     1   0.000      0.996 1.000  0 0.000
#> SRR1643331     1   0.000      0.996 1.000  0 0.000
#> SRR1643332     1   0.000      0.996 1.000  0 0.000
#> SRR1643333     1   0.000      0.996 1.000  0 0.000
#> SRR1643334     1   0.000      0.996 1.000  0 0.000
#> SRR1643335     1   0.000      0.996 1.000  0 0.000
#> SRR1643336     1   0.000      0.996 1.000  0 0.000
#> SRR1643337     1   0.000      0.996 1.000  0 0.000
#> SRR1643338     1   0.000      0.996 1.000  0 0.000
#> SRR1643339     1   0.000      0.996 1.000  0 0.000
#> SRR1643340     1   0.000      0.996 1.000  0 0.000
#> SRR1643341     1   0.000      0.996 1.000  0 0.000
#> SRR1643342     1   0.000      0.996 1.000  0 0.000
#> SRR1643343     1   0.000      0.996 1.000  0 0.000
#> SRR1643344     1   0.000      0.996 1.000  0 0.000
#> SRR1643345     1   0.000      0.996 1.000  0 0.000
#> SRR1643346     1   0.000      0.996 1.000  0 0.000
#> SRR1643347     1   0.000      0.996 1.000  0 0.000
#> SRR1643348     1   0.000      0.996 1.000  0 0.000
#> SRR1643349     1   0.000      0.996 1.000  0 0.000
#> SRR1643350     1   0.000      0.996 1.000  0 0.000
#> SRR1643351     1   0.000      0.996 1.000  0 0.000
#> SRR1643352     1   0.000      0.996 1.000  0 0.000
#> SRR1643353     1   0.000      0.996 1.000  0 0.000
#> SRR1643354     1   0.000      0.996 1.000  0 0.000
#> SRR1643355     1   0.000      0.996 1.000  0 0.000
#> SRR1643356     1   0.000      0.996 1.000  0 0.000
#> SRR1643357     1   0.000      0.996 1.000  0 0.000
#> SRR1643358     1   0.000      0.996 1.000  0 0.000
#> SRR1643359     1   0.000      0.996 1.000  0 0.000
#> SRR1643360     1   0.000      0.996 1.000  0 0.000
#> SRR1643361     1   0.000      0.996 1.000  0 0.000
#> SRR1643362     1   0.000      0.996 1.000  0 0.000
#> SRR1643363     1   0.000      0.996 1.000  0 0.000
#> SRR1643364     1   0.000      0.996 1.000  0 0.000
#> SRR1643365     1   0.000      0.996 1.000  0 0.000
#> SRR1643366     1   0.000      0.996 1.000  0 0.000
#> SRR1643367     1   0.000      0.996 1.000  0 0.000
#> SRR1643368     1   0.000      0.996 1.000  0 0.000
#> SRR1643369     1   0.000      0.996 1.000  0 0.000
#> SRR1643370     1   0.000      0.996 1.000  0 0.000
#> SRR1643371     1   0.000      0.996 1.000  0 0.000
#> SRR1643372     1   0.000      0.996 1.000  0 0.000
#> SRR1643373     1   0.000      0.996 1.000  0 0.000
#> SRR1643374     1   0.000      0.996 1.000  0 0.000
#> SRR1643375     1   0.000      0.996 1.000  0 0.000
#> SRR1643376     1   0.000      0.996 1.000  0 0.000
#> SRR1643377     1   0.000      0.996 1.000  0 0.000
#> SRR1643378     1   0.000      0.996 1.000  0 0.000
#> SRR1643379     1   0.000      0.996 1.000  0 0.000
#> SRR1643380     1   0.000      0.996 1.000  0 0.000
#> SRR1643381     1   0.000      0.996 1.000  0 0.000
#> SRR1643382     1   0.000      0.996 1.000  0 0.000
#> SRR1643383     1   0.000      0.996 1.000  0 0.000
#> SRR1643384     1   0.000      0.996 1.000  0 0.000
#> SRR1643385     1   0.000      0.996 1.000  0 0.000
#> SRR1643386     1   0.000      0.996 1.000  0 0.000
#> SRR1643387     1   0.000      0.996 1.000  0 0.000
#> SRR1643388     1   0.000      0.996 1.000  0 0.000
#> SRR1643389     1   0.000      0.996 1.000  0 0.000
#> SRR1643390     1   0.000      0.996 1.000  0 0.000
#> SRR1643391     1   0.000      0.996 1.000  0 0.000
#> SRR1643392     1   0.000      0.996 1.000  0 0.000
#> SRR1643393     1   0.000      0.996 1.000  0 0.000
#> SRR1643394     1   0.000      0.996 1.000  0 0.000
#> SRR1643395     1   0.000      0.996 1.000  0 0.000
#> SRR1643396     1   0.000      0.996 1.000  0 0.000
#> SRR1643397     1   0.000      0.996 1.000  0 0.000
#> SRR1643398     1   0.000      0.996 1.000  0 0.000
#> SRR1643399     1   0.000      0.996 1.000  0 0.000
#> SRR1643400     1   0.000      0.996 1.000  0 0.000
#> SRR1643401     1   0.000      0.996 1.000  0 0.000
#> SRR1643402     1   0.000      0.996 1.000  0 0.000
#> SRR1643403     1   0.000      0.996 1.000  0 0.000
#> SRR1643404     1   0.000      0.996 1.000  0 0.000
#> SRR1643405     1   0.000      0.996 1.000  0 0.000
#> SRR1643406     1   0.000      0.996 1.000  0 0.000
#> SRR1643407     1   0.000      0.996 1.000  0 0.000
#> SRR1643408     1   0.000      0.996 1.000  0 0.000
#> SRR1643409     1   0.000      0.996 1.000  0 0.000
#> SRR1643410     1   0.000      0.996 1.000  0 0.000
#> SRR1643411     1   0.000      0.996 1.000  0 0.000
#> SRR1643412     1   0.000      0.996 1.000  0 0.000
#> SRR1643413     1   0.000      0.996 1.000  0 0.000
#> SRR1643414     1   0.000      0.996 1.000  0 0.000
#> SRR1643415     1   0.000      0.996 1.000  0 0.000
#> SRR1643416     1   0.000      0.996 1.000  0 0.000
#> SRR1643417     1   0.000      0.996 1.000  0 0.000
#> SRR1643418     1   0.000      0.996 1.000  0 0.000
#> SRR1643419     1   0.000      0.996 1.000  0 0.000
#> SRR1643420     1   0.000      0.996 1.000  0 0.000
#> SRR1643421     1   0.000      0.996 1.000  0 0.000
#> SRR1643422     1   0.000      0.996 1.000  0 0.000
#> SRR1643423     1   0.000      0.996 1.000  0 0.000
#> SRR1643424     1   0.000      0.996 1.000  0 0.000
#> SRR1643425     1   0.000      0.996 1.000  0 0.000
#> SRR1643426     1   0.000      0.996 1.000  0 0.000
#> SRR1643427     1   0.000      0.996 1.000  0 0.000
#> SRR1643428     1   0.000      0.996 1.000  0 0.000
#> SRR1643429     1   0.000      0.996 1.000  0 0.000
#> SRR1643430     1   0.000      0.996 1.000  0 0.000
#> SRR1643431     1   0.000      0.996 1.000  0 0.000
#> SRR1643432     1   0.000      0.996 1.000  0 0.000
#> SRR1643433     1   0.000      0.996 1.000  0 0.000
#> SRR1643434     1   0.000      0.996 1.000  0 0.000
#> SRR1643435     1   0.000      0.996 1.000  0 0.000
#> SRR1643436     1   0.000      0.996 1.000  0 0.000
#> SRR1643437     1   0.000      0.996 1.000  0 0.000
#> SRR1643438     1   0.000      0.996 1.000  0 0.000
#> SRR1643439     1   0.000      0.996 1.000  0 0.000
#> SRR1643440     1   0.000      0.996 1.000  0 0.000
#> SRR1643441     1   0.000      0.996 1.000  0 0.000
#> SRR1643442     1   0.000      0.996 1.000  0 0.000
#> SRR1643443     2   0.000      1.000 0.000  1 0.000
#> SRR1643444     2   0.000      1.000 0.000  1 0.000
#> SRR1643445     2   0.000      1.000 0.000  1 0.000
#> SRR1643446     2   0.000      1.000 0.000  1 0.000
#> SRR1643447     2   0.000      1.000 0.000  1 0.000
#> SRR1643448     2   0.000      1.000 0.000  1 0.000
#> SRR1643449     2   0.000      1.000 0.000  1 0.000
#> SRR1643450     2   0.000      1.000 0.000  1 0.000
#> SRR1643451     2   0.000      1.000 0.000  1 0.000
#> SRR1643452     2   0.000      1.000 0.000  1 0.000
#> SRR1643453     2   0.000      1.000 0.000  1 0.000
#> SRR1643454     2   0.000      1.000 0.000  1 0.000
#> SRR1643455     2   0.000      1.000 0.000  1 0.000
#> SRR1643456     2   0.000      1.000 0.000  1 0.000
#> SRR1643457     2   0.000      1.000 0.000  1 0.000
#> SRR1643458     2   0.000      1.000 0.000  1 0.000
#> SRR1643459     2   0.000      1.000 0.000  1 0.000
#> SRR1643460     2   0.000      1.000 0.000  1 0.000
#> SRR1643461     2   0.000      1.000 0.000  1 0.000
#> SRR1643462     2   0.000      1.000 0.000  1 0.000
#> SRR1643463     2   0.000      1.000 0.000  1 0.000
#> SRR1643464     2   0.000      1.000 0.000  1 0.000
#> SRR1643466     2   0.000      1.000 0.000  1 0.000
#> SRR1643467     2   0.000      1.000 0.000  1 0.000
#> SRR1643468     2   0.000      1.000 0.000  1 0.000
#> SRR1643469     2   0.000      1.000 0.000  1 0.000
#> SRR1643470     2   0.000      1.000 0.000  1 0.000
#> SRR1643471     2   0.000      1.000 0.000  1 0.000
#> SRR1643472     2   0.000      1.000 0.000  1 0.000
#> SRR1643473     2   0.000      1.000 0.000  1 0.000
#> SRR1643474     2   0.000      1.000 0.000  1 0.000
#> SRR1643475     2   0.000      1.000 0.000  1 0.000
#> SRR1643477     2   0.000      1.000 0.000  1 0.000
#> SRR1643478     2   0.000      1.000 0.000  1 0.000
#> SRR1643479     2   0.000      1.000 0.000  1 0.000
#> SRR1643480     2   0.000      1.000 0.000  1 0.000
#> SRR1643481     2   0.000      1.000 0.000  1 0.000
#> SRR1643482     2   0.000      1.000 0.000  1 0.000
#> SRR1643483     2   0.000      1.000 0.000  1 0.000
#> SRR1643484     2   0.000      1.000 0.000  1 0.000
#> SRR1643485     2   0.000      1.000 0.000  1 0.000
#> SRR1643486     2   0.000      1.000 0.000  1 0.000
#> SRR1643487     2   0.000      1.000 0.000  1 0.000
#> SRR1643488     2   0.000      1.000 0.000  1 0.000
#> SRR1643489     2   0.000      1.000 0.000  1 0.000
#> SRR1643490     2   0.000      1.000 0.000  1 0.000
#> SRR1643491     2   0.000      1.000 0.000  1 0.000
#> SRR1643492     2   0.000      1.000 0.000  1 0.000
#> SRR1643493     2   0.000      1.000 0.000  1 0.000
#> SRR1643494     2   0.000      1.000 0.000  1 0.000
#> SRR1643495     2   0.000      1.000 0.000  1 0.000
#> SRR1643496     2   0.000      1.000 0.000  1 0.000
#> SRR1643497     2   0.000      1.000 0.000  1 0.000
#> SRR1643498     2   0.000      1.000 0.000  1 0.000
#> SRR1643499     2   0.000      1.000 0.000  1 0.000
#> SRR1643500     2   0.000      1.000 0.000  1 0.000
#> SRR1643501     2   0.000      1.000 0.000  1 0.000
#> SRR1643502     2   0.000      1.000 0.000  1 0.000
#> SRR1643503     2   0.000      1.000 0.000  1 0.000
#> SRR1643504     2   0.000      1.000 0.000  1 0.000
#> SRR1643505     2   0.000      1.000 0.000  1 0.000
#> SRR1643506     2   0.000      1.000 0.000  1 0.000
#> SRR1643507     2   0.000      1.000 0.000  1 0.000
#> SRR1643508     2   0.000      1.000 0.000  1 0.000
#> SRR1643509     2   0.000      1.000 0.000  1 0.000
#> SRR1643510     2   0.000      1.000 0.000  1 0.000
#> SRR1643511     2   0.000      1.000 0.000  1 0.000
#> SRR1643512     2   0.000      1.000 0.000  1 0.000
#> SRR1643513     2   0.000      1.000 0.000  1 0.000
#> SRR1643531     2   0.000      1.000 0.000  1 0.000
#> SRR1643532     2   0.000      1.000 0.000  1 0.000
#> SRR1643533     2   0.000      1.000 0.000  1 0.000
#> SRR1643534     2   0.000      1.000 0.000  1 0.000
#> SRR1643535     2   0.000      1.000 0.000  1 0.000
#> SRR1643536     2   0.000      1.000 0.000  1 0.000
#> SRR1643537     2   0.000      1.000 0.000  1 0.000
#> SRR1643538     2   0.000      1.000 0.000  1 0.000
#> SRR1643539     2   0.000      1.000 0.000  1 0.000
#> SRR1643540     2   0.000      1.000 0.000  1 0.000
#> SRR1643541     2   0.000      1.000 0.000  1 0.000
#> SRR1643542     2   0.000      1.000 0.000  1 0.000
#> SRR1643543     2   0.000      1.000 0.000  1 0.000
#> SRR1643544     2   0.000      1.000 0.000  1 0.000
#> SRR1643514     2   0.000      1.000 0.000  1 0.000
#> SRR1643515     2   0.000      1.000 0.000  1 0.000
#> SRR1643516     2   0.000      1.000 0.000  1 0.000
#> SRR1643517     2   0.000      1.000 0.000  1 0.000
#> SRR1643518     2   0.000      1.000 0.000  1 0.000
#> SRR1643519     2   0.000      1.000 0.000  1 0.000
#> SRR1643520     2   0.000      1.000 0.000  1 0.000
#> SRR1643521     2   0.000      1.000 0.000  1 0.000
#> SRR1643522     2   0.000      1.000 0.000  1 0.000
#> SRR1643523     2   0.000      1.000 0.000  1 0.000
#> SRR1643524     2   0.000      1.000 0.000  1 0.000
#> SRR1643525     2   0.000      1.000 0.000  1 0.000
#> SRR1643526     2   0.000      1.000 0.000  1 0.000
#> SRR1643527     2   0.000      1.000 0.000  1 0.000
#> SRR1643528     2   0.000      1.000 0.000  1 0.000
#> SRR1643529     2   0.000      1.000 0.000  1 0.000
#> SRR1643530     2   0.000      1.000 0.000  1 0.000
#> SRR1643545     2   0.000      1.000 0.000  1 0.000
#> SRR1643546     2   0.000      1.000 0.000  1 0.000
#> SRR1643547     2   0.000      1.000 0.000  1 0.000
#> SRR1643548     2   0.000      1.000 0.000  1 0.000
#> SRR1643549     2   0.000      1.000 0.000  1 0.000
#> SRR1643550     2   0.000      1.000 0.000  1 0.000
#> SRR1643551     2   0.000      1.000 0.000  1 0.000
#> SRR1643552     2   0.000      1.000 0.000  1 0.000
#> SRR1643553     2   0.000      1.000 0.000  1 0.000
#> SRR1643554     2   0.000      1.000 0.000  1 0.000
#> SRR1643555     2   0.000      1.000 0.000  1 0.000
#> SRR1643556     2   0.000      1.000 0.000  1 0.000
#> SRR1643558     2   0.000      1.000 0.000  1 0.000
#> SRR1643559     2   0.000      1.000 0.000  1 0.000
#> SRR1643560     2   0.000      1.000 0.000  1 0.000
#> SRR1643561     2   0.000      1.000 0.000  1 0.000
#> SRR1643562     2   0.000      1.000 0.000  1 0.000
#> SRR1643563     2   0.000      1.000 0.000  1 0.000
#> SRR1643564     2   0.000      1.000 0.000  1 0.000
#> SRR1643565     2   0.000      1.000 0.000  1 0.000
#> SRR1643566     2   0.000      1.000 0.000  1 0.000
#> SRR1643567     2   0.000      1.000 0.000  1 0.000
#> SRR1643568     2   0.000      1.000 0.000  1 0.000
#> SRR1643569     2   0.000      1.000 0.000  1 0.000
#> SRR1643570     2   0.000      1.000 0.000  1 0.000
#> SRR1643571     2   0.000      1.000 0.000  1 0.000
#> SRR1643572     2   0.000      1.000 0.000  1 0.000

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1 p2 p3    p4
#> SRR1643167     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643168     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643169     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643170     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643171     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643172     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643173     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643174     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643175     1  0.4697      0.581 0.644  0  0 0.356
#> SRR1643176     1  0.4713      0.575 0.640  0  0 0.360
#> SRR1643177     1  0.4713      0.575 0.640  0  0 0.360
#> SRR1643178     1  0.4679      0.586 0.648  0  0 0.352
#> SRR1643180     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643181     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643182     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643183     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643184     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643185     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643186     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643187     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643188     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643189     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643190     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643191     1  0.1389      0.867 0.952  0  0 0.048
#> SRR1643192     1  0.1302      0.867 0.956  0  0 0.044
#> SRR1643193     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643194     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643195     1  0.4164      0.679 0.736  0  0 0.264
#> SRR1643196     1  0.4164      0.679 0.736  0  0 0.264
#> SRR1643197     1  0.1389      0.867 0.952  0  0 0.048
#> SRR1643198     1  0.1389      0.867 0.952  0  0 0.048
#> SRR1643199     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643200     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643201     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643202     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643203     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643204     1  0.0000      0.852 1.000  0  0 0.000
#> SRR1643205     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643206     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643207     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643208     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643209     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643210     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643211     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643212     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643213     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643214     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643215     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643216     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643217     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643218     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643219     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643220     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643221     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643222     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643223     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643224     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643225     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643226     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643227     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643228     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643229     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643230     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643231     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643232     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643233     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643234     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643235     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643236     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643237     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643238     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643239     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643240     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643241     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643242     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643243     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643245     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643246     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643247     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643248     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643249     3  0.0000      1.000 0.000  0  1 0.000
#> SRR1643250     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643251     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643252     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643253     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643254     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643255     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643256     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643257     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643258     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643259     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643260     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643261     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643262     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643263     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643264     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643266     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643267     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643268     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643269     4  0.0336      0.980 0.008  0  0 0.992
#> SRR1643270     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643271     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643272     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643273     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643274     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643275     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643276     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643277     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643278     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643279     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643280     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643281     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643282     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643283     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643284     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643285     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643286     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643287     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643288     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643289     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643290     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643291     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643292     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643293     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643294     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643295     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643296     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643297     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643298     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643299     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643300     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643301     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643302     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643303     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643304     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643305     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643306     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643307     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643308     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643309     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643310     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643311     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643312     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643313     4  0.1022      0.974 0.032  0  0 0.968
#> SRR1643314     4  0.1716      0.944 0.064  0  0 0.936
#> SRR1643315     4  0.1867      0.935 0.072  0  0 0.928
#> SRR1643316     4  0.1637      0.948 0.060  0  0 0.940
#> SRR1643317     4  0.1716      0.944 0.064  0  0 0.936
#> SRR1643318     4  0.1637      0.948 0.060  0  0 0.940
#> SRR1643319     4  0.1637      0.948 0.060  0  0 0.940
#> SRR1643320     4  0.1637      0.948 0.060  0  0 0.940
#> SRR1643321     4  0.1637      0.948 0.060  0  0 0.940
#> SRR1643322     4  0.1637      0.948 0.060  0  0 0.940
#> SRR1643323     4  0.1637      0.948 0.060  0  0 0.940
#> SRR1643324     4  0.1637      0.948 0.060  0  0 0.940
#> SRR1643325     4  0.1637      0.948 0.060  0  0 0.940
#> SRR1643326     4  0.1637      0.948 0.060  0  0 0.940
#> SRR1643327     4  0.1637      0.948 0.060  0  0 0.940
#> SRR1643328     1  0.1716      0.867 0.936  0  0 0.064
#> SRR1643329     1  0.1716      0.867 0.936  0  0 0.064
#> SRR1643330     1  0.1716      0.867 0.936  0  0 0.064
#> SRR1643331     1  0.1940      0.864 0.924  0  0 0.076
#> SRR1643332     1  0.1716      0.867 0.936  0  0 0.064
#> SRR1643333     1  0.1867      0.865 0.928  0  0 0.072
#> SRR1643334     1  0.1557      0.867 0.944  0  0 0.056
#> SRR1643335     1  0.2011      0.862 0.920  0  0 0.080
#> SRR1643336     1  0.1867      0.865 0.928  0  0 0.072
#> SRR1643337     1  0.1792      0.866 0.932  0  0 0.068
#> SRR1643338     1  0.1716      0.867 0.936  0  0 0.064
#> SRR1643339     1  0.1867      0.865 0.928  0  0 0.072
#> SRR1643340     1  0.2011      0.862 0.920  0  0 0.080
#> SRR1643341     1  0.1716      0.867 0.936  0  0 0.064
#> SRR1643342     1  0.1792      0.866 0.932  0  0 0.068
#> SRR1643343     1  0.4866      0.500 0.596  0  0 0.404
#> SRR1643344     1  0.4866      0.500 0.596  0  0 0.404
#> SRR1643345     1  0.4866      0.500 0.596  0  0 0.404
#> SRR1643346     1  0.4866      0.500 0.596  0  0 0.404
#> SRR1643347     1  0.4866      0.500 0.596  0  0 0.404
#> SRR1643348     1  0.4866      0.500 0.596  0  0 0.404
#> SRR1643349     1  0.4866      0.500 0.596  0  0 0.404
#> SRR1643350     1  0.4866      0.500 0.596  0  0 0.404
#> SRR1643351     1  0.4866      0.500 0.596  0  0 0.404
#> SRR1643352     1  0.4866      0.500 0.596  0  0 0.404
#> SRR1643353     1  0.4866      0.500 0.596  0  0 0.404
#> SRR1643354     1  0.4866      0.500 0.596  0  0 0.404
#> SRR1643355     1  0.4866      0.500 0.596  0  0 0.404
#> SRR1643356     1  0.4866      0.500 0.596  0  0 0.404
#> SRR1643357     1  0.4866      0.500 0.596  0  0 0.404
#> SRR1643358     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643359     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643360     4  0.0188      0.981 0.004  0  0 0.996
#> SRR1643361     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643362     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643363     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643364     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643365     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643366     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643367     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643368     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643369     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643370     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643371     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643372     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643373     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643374     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643375     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643376     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643377     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643378     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643379     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643380     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643381     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643382     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643383     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643384     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643385     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643386     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643387     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643388     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643389     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643390     1  0.0921      0.865 0.972  0  0 0.028
#> SRR1643391     1  0.0921      0.865 0.972  0  0 0.028
#> SRR1643392     1  0.0921      0.865 0.972  0  0 0.028
#> SRR1643393     1  0.0921      0.865 0.972  0  0 0.028
#> SRR1643394     1  0.0921      0.865 0.972  0  0 0.028
#> SRR1643395     1  0.0921      0.865 0.972  0  0 0.028
#> SRR1643396     1  0.0921      0.865 0.972  0  0 0.028
#> SRR1643397     1  0.0921      0.865 0.972  0  0 0.028
#> SRR1643398     1  0.0921      0.865 0.972  0  0 0.028
#> SRR1643399     1  0.0921      0.865 0.972  0  0 0.028
#> SRR1643400     1  0.0921      0.865 0.972  0  0 0.028
#> SRR1643401     1  0.0921      0.865 0.972  0  0 0.028
#> SRR1643402     1  0.0921      0.865 0.972  0  0 0.028
#> SRR1643403     1  0.0921      0.865 0.972  0  0 0.028
#> SRR1643404     1  0.0921      0.865 0.972  0  0 0.028
#> SRR1643405     1  0.2011      0.862 0.920  0  0 0.080
#> SRR1643406     1  0.2011      0.862 0.920  0  0 0.080
#> SRR1643407     1  0.2011      0.862 0.920  0  0 0.080
#> SRR1643408     1  0.2011      0.862 0.920  0  0 0.080
#> SRR1643409     1  0.2011      0.862 0.920  0  0 0.080
#> SRR1643410     1  0.2011      0.862 0.920  0  0 0.080
#> SRR1643411     1  0.2011      0.862 0.920  0  0 0.080
#> SRR1643412     1  0.2011      0.862 0.920  0  0 0.080
#> SRR1643413     1  0.2011      0.862 0.920  0  0 0.080
#> SRR1643414     1  0.2011      0.862 0.920  0  0 0.080
#> SRR1643415     1  0.2011      0.862 0.920  0  0 0.080
#> SRR1643416     1  0.2011      0.862 0.920  0  0 0.080
#> SRR1643417     1  0.2011      0.862 0.920  0  0 0.080
#> SRR1643418     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643419     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643420     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643421     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643422     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643423     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643424     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643425     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643426     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643427     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643428     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643429     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643430     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643431     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643432     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643433     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643434     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643435     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643436     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643437     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643438     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643439     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643440     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643441     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643442     4  0.0000      0.981 0.000  0  0 1.000
#> SRR1643443     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643505     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1  0 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1  0 0.000

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1 p2    p3    p4    p5
#> SRR1643167     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643168     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643169     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643170     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643171     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643172     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643173     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643174     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643175     1  0.4201     0.3803 0.592  0 0.000 0.000 0.408
#> SRR1643176     1  0.4219     0.3603 0.584  0 0.000 0.000 0.416
#> SRR1643177     1  0.4235     0.3382 0.576  0 0.000 0.000 0.424
#> SRR1643178     1  0.4192     0.3913 0.596  0 0.000 0.000 0.404
#> SRR1643180     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643181     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643182     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643183     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643184     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643185     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643186     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643187     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643188     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643189     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643190     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643191     1  0.0963     0.9400 0.964  0 0.000 0.000 0.036
#> SRR1643192     1  0.0963     0.9400 0.964  0 0.000 0.000 0.036
#> SRR1643193     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643194     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643195     1  0.4668     0.4925 0.624  0 0.000 0.024 0.352
#> SRR1643196     1  0.4668     0.4925 0.624  0 0.000 0.024 0.352
#> SRR1643197     1  0.0162     0.9640 0.996  0 0.000 0.000 0.004
#> SRR1643198     1  0.0000     0.9650 1.000  0 0.000 0.000 0.000
#> SRR1643199     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643200     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643201     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643202     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643203     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643204     1  0.0162     0.9648 0.996  0 0.000 0.000 0.004
#> SRR1643205     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643206     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643207     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643208     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643209     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643210     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643211     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643212     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643213     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643214     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643215     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643216     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643217     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643218     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643219     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643220     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643221     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643222     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643223     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643224     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643225     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643226     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643227     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643228     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643229     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643230     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643231     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643232     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643233     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643234     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643235     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643236     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643237     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643238     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643239     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643240     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643241     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643242     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643243     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643245     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643246     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643247     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643248     3  0.0000     0.9995 0.000  0 1.000 0.000 0.000
#> SRR1643249     3  0.0703     0.9778 0.000  0 0.976 0.000 0.024
#> SRR1643250     4  0.3796     0.4840 0.000  0 0.000 0.700 0.300
#> SRR1643251     4  0.3730     0.5115 0.000  0 0.000 0.712 0.288
#> SRR1643252     4  0.3636     0.5379 0.000  0 0.000 0.728 0.272
#> SRR1643253     4  0.3816     0.4778 0.000  0 0.000 0.696 0.304
#> SRR1643254     4  0.3857     0.4621 0.000  0 0.000 0.688 0.312
#> SRR1643255     4  0.3684     0.5227 0.000  0 0.000 0.720 0.280
#> SRR1643256     4  0.3796     0.4880 0.000  0 0.000 0.700 0.300
#> SRR1643257     4  0.3684     0.5260 0.000  0 0.000 0.720 0.280
#> SRR1643258     4  0.3837     0.4754 0.000  0 0.000 0.692 0.308
#> SRR1643259     4  0.3752     0.5039 0.000  0 0.000 0.708 0.292
#> SRR1643260     4  0.3816     0.4779 0.000  0 0.000 0.696 0.304
#> SRR1643261     4  0.3752     0.5040 0.000  0 0.000 0.708 0.292
#> SRR1643262     4  0.1671     0.8380 0.000  0 0.000 0.924 0.076
#> SRR1643263     4  0.1671     0.8380 0.000  0 0.000 0.924 0.076
#> SRR1643264     4  0.1671     0.8380 0.000  0 0.000 0.924 0.076
#> SRR1643266     4  0.1671     0.8380 0.000  0 0.000 0.924 0.076
#> SRR1643267     4  0.1671     0.8380 0.000  0 0.000 0.924 0.076
#> SRR1643268     4  0.1671     0.8380 0.000  0 0.000 0.924 0.076
#> SRR1643269     4  0.1671     0.8380 0.000  0 0.000 0.924 0.076
#> SRR1643270     4  0.1671     0.8380 0.000  0 0.000 0.924 0.076
#> SRR1643271     4  0.1671     0.8380 0.000  0 0.000 0.924 0.076
#> SRR1643272     4  0.1671     0.8380 0.000  0 0.000 0.924 0.076
#> SRR1643273     5  0.4074     0.5678 0.000  0 0.000 0.364 0.636
#> SRR1643274     5  0.4182     0.5054 0.000  0 0.000 0.400 0.600
#> SRR1643275     5  0.4114     0.5545 0.000  0 0.000 0.376 0.624
#> SRR1643276     5  0.4114     0.5545 0.000  0 0.000 0.376 0.624
#> SRR1643277     5  0.4060     0.5723 0.000  0 0.000 0.360 0.640
#> SRR1643278     5  0.4088     0.5627 0.000  0 0.000 0.368 0.632
#> SRR1643279     5  0.4126     0.5459 0.000  0 0.000 0.380 0.620
#> SRR1643280     5  0.4138     0.5413 0.000  0 0.000 0.384 0.616
#> SRR1643281     5  0.4138     0.5381 0.000  0 0.000 0.384 0.616
#> SRR1643282     5  0.4114     0.5517 0.000  0 0.000 0.376 0.624
#> SRR1643283     5  0.4101     0.5574 0.000  0 0.000 0.372 0.628
#> SRR1643284     5  0.4161     0.5222 0.000  0 0.000 0.392 0.608
#> SRR1643285     5  0.4126     0.5449 0.000  0 0.000 0.380 0.620
#> SRR1643286     5  0.4201     0.4886 0.000  0 0.000 0.408 0.592
#> SRR1643287     4  0.0290     0.8865 0.000  0 0.000 0.992 0.008
#> SRR1643288     4  0.0290     0.8865 0.000  0 0.000 0.992 0.008
#> SRR1643289     4  0.0290     0.8865 0.000  0 0.000 0.992 0.008
#> SRR1643290     4  0.0290     0.8865 0.000  0 0.000 0.992 0.008
#> SRR1643291     4  0.0290     0.8865 0.000  0 0.000 0.992 0.008
#> SRR1643292     4  0.0290     0.8865 0.000  0 0.000 0.992 0.008
#> SRR1643293     4  0.0290     0.8865 0.000  0 0.000 0.992 0.008
#> SRR1643294     4  0.0290     0.8865 0.000  0 0.000 0.992 0.008
#> SRR1643295     4  0.0290     0.8865 0.000  0 0.000 0.992 0.008
#> SRR1643296     4  0.0290     0.8865 0.000  0 0.000 0.992 0.008
#> SRR1643297     4  0.0290     0.8865 0.000  0 0.000 0.992 0.008
#> SRR1643298     4  0.0290     0.8865 0.000  0 0.000 0.992 0.008
#> SRR1643299     4  0.0290     0.8865 0.000  0 0.000 0.992 0.008
#> SRR1643300     4  0.0290     0.8865 0.000  0 0.000 0.992 0.008
#> SRR1643301     4  0.4287    -0.0859 0.000  0 0.000 0.540 0.460
#> SRR1643302     4  0.4300    -0.1456 0.000  0 0.000 0.524 0.476
#> SRR1643303     5  0.4307     0.2326 0.000  0 0.000 0.496 0.504
#> SRR1643304     4  0.4300    -0.1454 0.000  0 0.000 0.524 0.476
#> SRR1643305     5  0.4297     0.3136 0.000  0 0.000 0.472 0.528
#> SRR1643306     5  0.4305     0.2626 0.000  0 0.000 0.488 0.512
#> SRR1643307     4  0.4300    -0.1452 0.000  0 0.000 0.524 0.476
#> SRR1643308     5  0.4302     0.2891 0.000  0 0.000 0.480 0.520
#> SRR1643309     4  0.4171     0.1838 0.000  0 0.000 0.604 0.396
#> SRR1643310     4  0.4307    -0.2409 0.000  0 0.000 0.500 0.500
#> SRR1643311     4  0.4297    -0.1348 0.000  0 0.000 0.528 0.472
#> SRR1643312     5  0.4302     0.2900 0.000  0 0.000 0.480 0.520
#> SRR1643313     4  0.4291    -0.0954 0.000  0 0.000 0.536 0.464
#> SRR1643314     5  0.1341     0.7784 0.000  0 0.000 0.056 0.944
#> SRR1643315     5  0.1341     0.7784 0.000  0 0.000 0.056 0.944
#> SRR1643316     5  0.1544     0.7786 0.000  0 0.000 0.068 0.932
#> SRR1643317     5  0.1410     0.7790 0.000  0 0.000 0.060 0.940
#> SRR1643318     5  0.1410     0.7790 0.000  0 0.000 0.060 0.940
#> SRR1643319     5  0.4622     0.6315 0.040  0 0.000 0.276 0.684
#> SRR1643320     5  0.2561     0.7453 0.000  0 0.000 0.144 0.856
#> SRR1643321     5  0.1544     0.7787 0.000  0 0.000 0.068 0.932
#> SRR1643322     5  0.1410     0.7790 0.000  0 0.000 0.060 0.940
#> SRR1643323     5  0.1341     0.7784 0.000  0 0.000 0.056 0.944
#> SRR1643324     5  0.1341     0.7784 0.000  0 0.000 0.056 0.944
#> SRR1643325     5  0.1478     0.7795 0.000  0 0.000 0.064 0.936
#> SRR1643326     5  0.1478     0.7792 0.000  0 0.000 0.064 0.936
#> SRR1643327     5  0.1478     0.7791 0.000  0 0.000 0.064 0.936
#> SRR1643328     1  0.0162     0.9644 0.996  0 0.000 0.000 0.004
#> SRR1643329     1  0.0162     0.9644 0.996  0 0.000 0.000 0.004
#> SRR1643330     1  0.0162     0.9644 0.996  0 0.000 0.000 0.004
#> SRR1643331     1  0.0162     0.9644 0.996  0 0.000 0.000 0.004
#> SRR1643332     1  0.0162     0.9644 0.996  0 0.000 0.000 0.004
#> SRR1643333     1  0.0162     0.9644 0.996  0 0.000 0.000 0.004
#> SRR1643334     1  0.0000     0.9650 1.000  0 0.000 0.000 0.000
#> SRR1643335     1  0.0162     0.9644 0.996  0 0.000 0.000 0.004
#> SRR1643336     1  0.0162     0.9644 0.996  0 0.000 0.000 0.004
#> SRR1643337     1  0.0162     0.9644 0.996  0 0.000 0.000 0.004
#> SRR1643338     1  0.0162     0.9644 0.996  0 0.000 0.000 0.004
#> SRR1643339     1  0.0162     0.9644 0.996  0 0.000 0.000 0.004
#> SRR1643340     1  0.0162     0.9644 0.996  0 0.000 0.000 0.004
#> SRR1643341     1  0.0162     0.9644 0.996  0 0.000 0.000 0.004
#> SRR1643342     1  0.0162     0.9644 0.996  0 0.000 0.000 0.004
#> SRR1643343     5  0.0162     0.7577 0.004  0 0.000 0.000 0.996
#> SRR1643344     5  0.0162     0.7577 0.004  0 0.000 0.000 0.996
#> SRR1643345     5  0.0162     0.7577 0.004  0 0.000 0.000 0.996
#> SRR1643346     5  0.0162     0.7577 0.004  0 0.000 0.000 0.996
#> SRR1643347     5  0.0162     0.7577 0.004  0 0.000 0.000 0.996
#> SRR1643348     5  0.0162     0.7577 0.004  0 0.000 0.000 0.996
#> SRR1643349     5  0.0162     0.7577 0.004  0 0.000 0.000 0.996
#> SRR1643350     5  0.0162     0.7577 0.004  0 0.000 0.000 0.996
#> SRR1643351     5  0.0162     0.7577 0.004  0 0.000 0.000 0.996
#> SRR1643352     5  0.0162     0.7577 0.004  0 0.000 0.000 0.996
#> SRR1643353     5  0.0162     0.7577 0.004  0 0.000 0.000 0.996
#> SRR1643354     5  0.0162     0.7577 0.004  0 0.000 0.000 0.996
#> SRR1643355     5  0.0162     0.7577 0.004  0 0.000 0.000 0.996
#> SRR1643356     5  0.0162     0.7577 0.004  0 0.000 0.000 0.996
#> SRR1643357     5  0.0162     0.7577 0.004  0 0.000 0.000 0.996
#> SRR1643358     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643359     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643360     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643361     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643362     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643363     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643364     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643365     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643366     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643367     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643368     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643369     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643370     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643371     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643372     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643373     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643374     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643375     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643376     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643377     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643378     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643379     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643380     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643381     4  0.0290     0.8876 0.000  0 0.000 0.992 0.008
#> SRR1643382     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643383     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643384     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643385     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643386     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643387     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643388     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643389     4  0.0162     0.8894 0.000  0 0.000 0.996 0.004
#> SRR1643390     1  0.0000     0.9650 1.000  0 0.000 0.000 0.000
#> SRR1643391     1  0.0000     0.9650 1.000  0 0.000 0.000 0.000
#> SRR1643392     1  0.0000     0.9650 1.000  0 0.000 0.000 0.000
#> SRR1643393     1  0.0000     0.9650 1.000  0 0.000 0.000 0.000
#> SRR1643394     1  0.0000     0.9650 1.000  0 0.000 0.000 0.000
#> SRR1643395     1  0.0000     0.9650 1.000  0 0.000 0.000 0.000
#> SRR1643396     1  0.0000     0.9650 1.000  0 0.000 0.000 0.000
#> SRR1643397     1  0.0000     0.9650 1.000  0 0.000 0.000 0.000
#> SRR1643398     1  0.0000     0.9650 1.000  0 0.000 0.000 0.000
#> SRR1643399     1  0.0000     0.9650 1.000  0 0.000 0.000 0.000
#> SRR1643400     1  0.0000     0.9650 1.000  0 0.000 0.000 0.000
#> SRR1643401     1  0.0000     0.9650 1.000  0 0.000 0.000 0.000
#> SRR1643402     1  0.0000     0.9650 1.000  0 0.000 0.000 0.000
#> SRR1643403     1  0.0000     0.9650 1.000  0 0.000 0.000 0.000
#> SRR1643404     1  0.0000     0.9650 1.000  0 0.000 0.000 0.000
#> SRR1643405     1  0.0324     0.9624 0.992  0 0.000 0.004 0.004
#> SRR1643406     1  0.0324     0.9624 0.992  0 0.000 0.004 0.004
#> SRR1643407     1  0.0324     0.9624 0.992  0 0.000 0.004 0.004
#> SRR1643408     1  0.0324     0.9624 0.992  0 0.000 0.004 0.004
#> SRR1643409     1  0.0324     0.9624 0.992  0 0.000 0.004 0.004
#> SRR1643410     1  0.0324     0.9624 0.992  0 0.000 0.004 0.004
#> SRR1643411     1  0.0324     0.9624 0.992  0 0.000 0.004 0.004
#> SRR1643412     1  0.0324     0.9624 0.992  0 0.000 0.004 0.004
#> SRR1643413     1  0.0324     0.9624 0.992  0 0.000 0.004 0.004
#> SRR1643414     1  0.0324     0.9624 0.992  0 0.000 0.004 0.004
#> SRR1643415     1  0.0324     0.9624 0.992  0 0.000 0.004 0.004
#> SRR1643416     1  0.0324     0.9624 0.992  0 0.000 0.004 0.004
#> SRR1643417     1  0.0324     0.9624 0.992  0 0.000 0.004 0.004
#> SRR1643418     4  0.0162     0.8877 0.000  0 0.000 0.996 0.004
#> SRR1643419     4  0.0162     0.8877 0.000  0 0.000 0.996 0.004
#> SRR1643420     4  0.0162     0.8877 0.000  0 0.000 0.996 0.004
#> SRR1643421     4  0.0162     0.8877 0.000  0 0.000 0.996 0.004
#> SRR1643422     4  0.0162     0.8877 0.000  0 0.000 0.996 0.004
#> SRR1643423     4  0.0162     0.8877 0.000  0 0.000 0.996 0.004
#> SRR1643424     4  0.0162     0.8877 0.000  0 0.000 0.996 0.004
#> SRR1643425     4  0.0162     0.8877 0.000  0 0.000 0.996 0.004
#> SRR1643426     4  0.0162     0.8877 0.000  0 0.000 0.996 0.004
#> SRR1643427     4  0.0162     0.8877 0.000  0 0.000 0.996 0.004
#> SRR1643428     4  0.0162     0.8877 0.000  0 0.000 0.996 0.004
#> SRR1643429     4  0.0162     0.8877 0.000  0 0.000 0.996 0.004
#> SRR1643430     4  0.0000     0.8887 0.000  0 0.000 1.000 0.000
#> SRR1643431     4  0.0000     0.8887 0.000  0 0.000 1.000 0.000
#> SRR1643432     4  0.0000     0.8887 0.000  0 0.000 1.000 0.000
#> SRR1643433     4  0.0000     0.8887 0.000  0 0.000 1.000 0.000
#> SRR1643434     4  0.0000     0.8887 0.000  0 0.000 1.000 0.000
#> SRR1643435     4  0.0000     0.8887 0.000  0 0.000 1.000 0.000
#> SRR1643436     4  0.0000     0.8887 0.000  0 0.000 1.000 0.000
#> SRR1643437     4  0.0000     0.8887 0.000  0 0.000 1.000 0.000
#> SRR1643438     4  0.0000     0.8887 0.000  0 0.000 1.000 0.000
#> SRR1643439     4  0.0000     0.8887 0.000  0 0.000 1.000 0.000
#> SRR1643440     4  0.0000     0.8887 0.000  0 0.000 1.000 0.000
#> SRR1643441     4  0.0000     0.8887 0.000  0 0.000 1.000 0.000
#> SRR1643442     4  0.0000     0.8887 0.000  0 0.000 1.000 0.000
#> SRR1643443     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643444     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643445     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643446     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643447     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643448     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643449     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643450     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643451     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643452     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643453     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643454     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643455     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643456     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643457     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643458     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643459     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643460     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643461     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643462     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643463     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643464     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643466     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643467     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643468     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643469     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643470     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643471     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643472     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643473     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643474     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643475     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643477     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643478     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643479     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643480     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643481     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643482     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643483     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643484     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643485     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643486     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643487     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643488     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643489     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643490     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643491     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643492     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643493     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643494     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643495     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643496     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643497     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643498     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643499     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643500     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643501     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643502     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643503     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643504     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643505     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643506     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643507     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643508     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643509     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643510     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643511     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643512     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643513     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643531     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643532     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643533     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643534     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643535     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643536     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643537     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643538     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643539     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643540     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643541     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643542     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643543     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643544     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643514     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643515     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643516     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643517     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643518     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643519     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643520     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643521     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643522     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643523     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643524     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643525     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643526     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643527     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643528     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643529     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643530     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643545     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643546     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643547     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643548     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643549     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643550     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643551     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643552     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643553     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643554     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643555     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643556     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643558     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643559     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643560     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643561     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643562     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643563     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643564     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643565     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643566     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643567     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643568     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643569     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643570     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643571     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000
#> SRR1643572     2  0.0000     1.0000 0.000  1 0.000 0.000 0.000

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2   p3    p4    p5    p6
#> SRR1643167     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643168     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643169     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643170     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643171     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643172     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643173     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643174     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643175     6  0.3866     0.0823 0.484 0.000 0.00 0.000 0.000 0.516
#> SRR1643176     6  0.3857     0.1392 0.468 0.000 0.00 0.000 0.000 0.532
#> SRR1643177     6  0.3862     0.1123 0.476 0.000 0.00 0.000 0.000 0.524
#> SRR1643178     1  0.3868    -0.0302 0.504 0.000 0.00 0.000 0.000 0.496
#> SRR1643180     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643181     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643182     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643183     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643184     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643185     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643186     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643187     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643188     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643189     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643190     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643191     1  0.1745     0.9010 0.920 0.000 0.00 0.000 0.012 0.068
#> SRR1643192     1  0.1745     0.9010 0.920 0.000 0.00 0.000 0.012 0.068
#> SRR1643193     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643194     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643195     1  0.4609     0.4556 0.608 0.000 0.00 0.024 0.016 0.352
#> SRR1643196     1  0.4609     0.4556 0.608 0.000 0.00 0.024 0.016 0.352
#> SRR1643197     1  0.0260     0.9514 0.992 0.000 0.00 0.000 0.000 0.008
#> SRR1643198     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643199     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643200     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643201     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643202     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643203     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643204     1  0.1588     0.9362 0.924 0.000 0.00 0.004 0.072 0.000
#> SRR1643205     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643206     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643207     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643208     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643209     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643210     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643211     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643212     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643213     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643214     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643215     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643216     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643217     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643218     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643219     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643220     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643221     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643222     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643223     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643224     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643225     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643226     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643227     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643228     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643229     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643230     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643231     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643232     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643233     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643234     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643235     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643236     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643237     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643238     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643239     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643240     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643241     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643242     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643243     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643245     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643246     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643247     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643248     3  0.0000     0.9992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643249     3  0.1116     0.9637 0.004 0.000 0.96 0.000 0.008 0.028
#> SRR1643250     4  0.3869    -0.0154 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643251     4  0.3869    -0.0154 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643252     6  0.3869    -0.0161 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643253     6  0.3869    -0.0161 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643254     4  0.3869    -0.0154 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643255     6  0.3869    -0.0161 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643256     6  0.3869    -0.0161 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643257     4  0.3869    -0.0154 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643258     4  0.3869    -0.0154 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643259     4  0.3869    -0.0154 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643260     4  0.3869    -0.0154 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643261     6  0.3869    -0.0161 0.000 0.000 0.00 0.500 0.000 0.500
#> SRR1643262     4  0.1267     0.8392 0.000 0.000 0.00 0.940 0.000 0.060
#> SRR1643263     4  0.1267     0.8392 0.000 0.000 0.00 0.940 0.000 0.060
#> SRR1643264     4  0.1267     0.8392 0.000 0.000 0.00 0.940 0.000 0.060
#> SRR1643266     4  0.1267     0.8392 0.000 0.000 0.00 0.940 0.000 0.060
#> SRR1643267     4  0.1267     0.8392 0.000 0.000 0.00 0.940 0.000 0.060
#> SRR1643268     4  0.1501     0.8281 0.000 0.000 0.00 0.924 0.000 0.076
#> SRR1643269     4  0.1387     0.8338 0.000 0.000 0.00 0.932 0.000 0.068
#> SRR1643270     4  0.1327     0.8375 0.000 0.000 0.00 0.936 0.000 0.064
#> SRR1643271     4  0.1267     0.8392 0.000 0.000 0.00 0.940 0.000 0.060
#> SRR1643272     4  0.1327     0.8375 0.000 0.000 0.00 0.936 0.000 0.064
#> SRR1643273     6  0.1204     0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643274     6  0.1267     0.8930 0.000 0.000 0.00 0.060 0.000 0.940
#> SRR1643275     6  0.1267     0.8930 0.000 0.000 0.00 0.060 0.000 0.940
#> SRR1643276     6  0.1204     0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643277     6  0.1204     0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643278     6  0.1204     0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643279     6  0.1204     0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643280     6  0.1204     0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643281     6  0.1204     0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643282     6  0.1204     0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643283     6  0.1204     0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643284     6  0.1204     0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643285     6  0.1204     0.8942 0.000 0.000 0.00 0.056 0.000 0.944
#> SRR1643286     6  0.1267     0.8925 0.000 0.000 0.00 0.060 0.000 0.940
#> SRR1643287     4  0.2135     0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643288     4  0.2135     0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643289     4  0.2135     0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643290     4  0.2135     0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643291     4  0.2135     0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643292     4  0.2135     0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643293     4  0.2135     0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643294     4  0.2135     0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643295     4  0.2135     0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643296     4  0.2135     0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643297     4  0.2135     0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643298     4  0.2135     0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643299     4  0.2135     0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643300     4  0.2135     0.7861 0.000 0.000 0.00 0.872 0.128 0.000
#> SRR1643301     6  0.1501     0.8848 0.000 0.000 0.00 0.076 0.000 0.924
#> SRR1643302     6  0.1501     0.8848 0.000 0.000 0.00 0.076 0.000 0.924
#> SRR1643303     6  0.1444     0.8878 0.000 0.000 0.00 0.072 0.000 0.928
#> SRR1643304     6  0.1501     0.8848 0.000 0.000 0.00 0.076 0.000 0.924
#> SRR1643305     6  0.1387     0.8897 0.000 0.000 0.00 0.068 0.000 0.932
#> SRR1643306     6  0.1444     0.8878 0.000 0.000 0.00 0.072 0.000 0.928
#> SRR1643307     6  0.1501     0.8848 0.000 0.000 0.00 0.076 0.000 0.924
#> SRR1643308     6  0.1444     0.8878 0.000 0.000 0.00 0.072 0.000 0.928
#> SRR1643309     6  0.1556     0.8810 0.000 0.000 0.00 0.080 0.000 0.920
#> SRR1643310     6  0.1444     0.8878 0.000 0.000 0.00 0.072 0.000 0.928
#> SRR1643311     6  0.1501     0.8848 0.000 0.000 0.00 0.076 0.000 0.924
#> SRR1643312     6  0.1444     0.8878 0.000 0.000 0.00 0.072 0.000 0.928
#> SRR1643313     6  0.1501     0.8848 0.000 0.000 0.00 0.076 0.000 0.924
#> SRR1643314     6  0.0777     0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643315     6  0.0777     0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643316     6  0.0777     0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643317     6  0.0777     0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643318     6  0.0777     0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643319     6  0.1713     0.8831 0.028 0.000 0.00 0.044 0.000 0.928
#> SRR1643320     6  0.0777     0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643321     6  0.0858     0.8936 0.004 0.000 0.00 0.028 0.000 0.968
#> SRR1643322     6  0.0777     0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643323     6  0.0777     0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643324     6  0.0777     0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643325     6  0.0777     0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643326     6  0.1152     0.8945 0.004 0.000 0.00 0.044 0.000 0.952
#> SRR1643327     6  0.0777     0.8931 0.004 0.000 0.00 0.024 0.000 0.972
#> SRR1643328     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643329     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643330     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643331     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643332     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643333     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643334     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643335     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643336     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643337     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643338     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643339     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643340     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643341     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643342     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643343     6  0.0000     0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643344     6  0.0000     0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643345     6  0.0000     0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643346     6  0.0000     0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643347     6  0.0000     0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643348     6  0.0000     0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643349     6  0.0000     0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643350     6  0.0000     0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643351     6  0.0000     0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643352     6  0.0000     0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643353     6  0.0000     0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643354     6  0.0000     0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643355     6  0.0000     0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643356     6  0.0000     0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643357     6  0.0000     0.8816 0.000 0.000 0.00 0.000 0.000 1.000
#> SRR1643358     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643359     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643360     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643361     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643362     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643363     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643364     4  0.1327     0.8378 0.000 0.000 0.00 0.936 0.000 0.064
#> SRR1643365     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643366     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643367     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643368     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643369     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643370     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643371     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643372     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643373     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643374     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643375     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643376     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643377     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643378     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643379     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643380     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643381     4  0.3244     0.6098 0.000 0.000 0.00 0.732 0.000 0.268
#> SRR1643382     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643383     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643384     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643385     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643386     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643387     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643388     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643389     4  0.0146     0.8644 0.000 0.000 0.00 0.996 0.000 0.004
#> SRR1643390     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643391     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643392     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643393     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643394     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643395     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643396     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643397     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643398     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643399     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643400     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643401     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643402     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643403     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643404     1  0.0146     0.9528 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643405     1  0.0363     0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643406     1  0.0363     0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643407     1  0.0363     0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643408     1  0.0363     0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643409     1  0.0260     0.9514 0.992 0.000 0.00 0.000 0.000 0.008
#> SRR1643410     1  0.0260     0.9514 0.992 0.000 0.00 0.000 0.000 0.008
#> SRR1643411     1  0.0363     0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643412     1  0.0363     0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643413     1  0.0363     0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643414     1  0.0363     0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643415     1  0.0363     0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643416     1  0.0363     0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643417     1  0.0363     0.9499 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643418     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643419     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643420     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643421     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643422     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643423     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643424     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643425     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643426     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643427     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643428     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643429     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643430     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643431     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643432     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643433     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643434     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643435     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643436     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643437     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643438     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643439     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643440     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643441     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643442     5  0.2092     1.0000 0.000 0.000 0.00 0.124 0.876 0.000
#> SRR1643443     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643444     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643445     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643446     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643447     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643448     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643449     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643450     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643451     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643452     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643453     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643454     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643455     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643456     2  0.0363     0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643457     2  0.0363     0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643458     2  0.0363     0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643459     2  0.0363     0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643460     2  0.0363     0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643461     2  0.0363     0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643462     2  0.0363     0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643463     2  0.0363     0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643464     2  0.0363     0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643466     2  0.0363     0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643467     2  0.0363     0.9807 0.000 0.988 0.00 0.000 0.012 0.000
#> SRR1643468     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643469     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643470     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643471     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643472     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643473     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643474     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643475     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643477     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643478     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643479     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643480     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643481     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643482     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643483     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643484     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643485     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643486     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643487     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643488     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643489     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643490     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643491     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643492     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643493     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643494     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643495     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643496     2  0.0713     0.9746 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643497     2  0.0000     0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643498     2  0.0000     0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643499     2  0.0000     0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643500     2  0.0000     0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643501     2  0.0000     0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643502     2  0.0000     0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643503     2  0.0000     0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643504     2  0.0000     0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643505     2  0.0000     0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643506     2  0.0000     0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643507     2  0.0000     0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643508     2  0.0000     0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643509     2  0.0000     0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643510     2  0.0000     0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643511     2  0.0000     0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643512     2  0.0000     0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643513     2  0.0000     0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643531     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643532     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643533     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643534     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643535     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643536     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643537     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643538     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643539     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643540     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643541     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643542     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643543     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643544     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643514     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643515     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643516     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643517     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643518     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643519     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643520     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643521     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643522     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643523     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643524     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643525     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643526     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643527     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643528     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643529     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643530     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643545     2  0.0146     0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643546     2  0.0146     0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643547     2  0.0146     0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643548     2  0.0146     0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643549     2  0.0146     0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643550     2  0.0000     0.9832 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643551     2  0.0146     0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643552     2  0.0146     0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643553     2  0.0146     0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643554     2  0.0146     0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643555     2  0.0146     0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643556     2  0.0146     0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643558     2  0.0146     0.9826 0.000 0.996 0.00 0.000 0.004 0.000
#> SRR1643559     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643560     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643561     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643562     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643563     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643564     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643565     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643566     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643567     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643568     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643569     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643570     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643571     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000
#> SRR1643572     2  0.0632     0.9830 0.000 0.976 0.00 0.000 0.024 0.000

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-SD-mclust-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-SD-mclust-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-SD-mclust-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-SD-mclust-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-SD-mclust-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-SD-mclust-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-SD-mclust-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-SD-mclust-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-SD-mclust-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-SD-mclust-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-SD-mclust-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-SD-mclust-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-SD-mclust-get-signatures-3

get_signatures(res, k = 5)

plot of chunk tab-SD-mclust-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-SD-mclust-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-SD-mclust-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-SD-mclust-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-SD-mclust-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)

plot of chunk tab-SD-mclust-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-SD-mclust-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk SD-mclust-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-SD-mclust-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-SD-mclust-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-SD-mclust-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-SD-mclust-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-SD-mclust-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk SD-mclust-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


SD:NMF**

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["SD", "NMF"]
# you can also extract it by
# res = res_list["SD:NMF"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'SD' method.
#>   Subgroups are detected by 'NMF' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 3.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk SD-NMF-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk SD-NMF-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000         0.4350 0.566   0.566
#> 3 3 1.000           0.999       0.999         0.2913 0.874   0.777
#> 4 4 0.828           0.911       0.911         0.2204 0.842   0.639
#> 5 5 0.817           0.882       0.904         0.0698 0.978   0.924
#> 6 6 0.845           0.723       0.814         0.0556 0.982   0.936

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 3
#> attr(,"optional")
#> [1] 2

There is also optional best \(k\) = 2 that is worth to check.

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1 p2    p3
#> SRR1643167     1  0.0000      0.998 1.000  0 0.000
#> SRR1643168     1  0.0000      0.998 1.000  0 0.000
#> SRR1643169     1  0.0000      0.998 1.000  0 0.000
#> SRR1643170     1  0.0000      0.998 1.000  0 0.000
#> SRR1643171     1  0.0747      0.986 0.984  0 0.016
#> SRR1643172     1  0.0747      0.986 0.984  0 0.016
#> SRR1643173     1  0.0747      0.986 0.984  0 0.016
#> SRR1643174     1  0.0747      0.986 0.984  0 0.016
#> SRR1643175     1  0.0000      0.998 1.000  0 0.000
#> SRR1643176     1  0.0000      0.998 1.000  0 0.000
#> SRR1643177     1  0.0000      0.998 1.000  0 0.000
#> SRR1643178     1  0.0000      0.998 1.000  0 0.000
#> SRR1643180     1  0.0424      0.993 0.992  0 0.008
#> SRR1643181     1  0.0424      0.993 0.992  0 0.008
#> SRR1643182     1  0.0424      0.993 0.992  0 0.008
#> SRR1643183     1  0.0237      0.996 0.996  0 0.004
#> SRR1643184     1  0.0237      0.996 0.996  0 0.004
#> SRR1643185     1  0.0237      0.996 0.996  0 0.004
#> SRR1643186     1  0.0237      0.996 0.996  0 0.004
#> SRR1643187     1  0.0000      0.998 1.000  0 0.000
#> SRR1643188     1  0.0000      0.998 1.000  0 0.000
#> SRR1643189     1  0.0000      0.998 1.000  0 0.000
#> SRR1643190     1  0.0000      0.998 1.000  0 0.000
#> SRR1643191     1  0.1031      0.978 0.976  0 0.024
#> SRR1643192     1  0.1031      0.978 0.976  0 0.024
#> SRR1643193     1  0.0000      0.998 1.000  0 0.000
#> SRR1643194     1  0.0000      0.998 1.000  0 0.000
#> SRR1643195     1  0.0000      0.998 1.000  0 0.000
#> SRR1643196     1  0.0000      0.998 1.000  0 0.000
#> SRR1643197     1  0.0237      0.996 0.996  0 0.004
#> SRR1643198     1  0.0237      0.996 0.996  0 0.004
#> SRR1643199     1  0.0000      0.998 1.000  0 0.000
#> SRR1643200     1  0.0000      0.998 1.000  0 0.000
#> SRR1643201     1  0.0000      0.998 1.000  0 0.000
#> SRR1643202     1  0.0000      0.998 1.000  0 0.000
#> SRR1643203     1  0.0000      0.998 1.000  0 0.000
#> SRR1643204     1  0.0000      0.998 1.000  0 0.000
#> SRR1643205     3  0.0000      1.000 0.000  0 1.000
#> SRR1643206     3  0.0000      1.000 0.000  0 1.000
#> SRR1643207     3  0.0000      1.000 0.000  0 1.000
#> SRR1643208     3  0.0000      1.000 0.000  0 1.000
#> SRR1643209     3  0.0000      1.000 0.000  0 1.000
#> SRR1643210     3  0.0000      1.000 0.000  0 1.000
#> SRR1643211     3  0.0000      1.000 0.000  0 1.000
#> SRR1643212     3  0.0000      1.000 0.000  0 1.000
#> SRR1643213     3  0.0000      1.000 0.000  0 1.000
#> SRR1643214     3  0.0000      1.000 0.000  0 1.000
#> SRR1643215     3  0.0000      1.000 0.000  0 1.000
#> SRR1643216     3  0.0000      1.000 0.000  0 1.000
#> SRR1643217     3  0.0000      1.000 0.000  0 1.000
#> SRR1643218     3  0.0000      1.000 0.000  0 1.000
#> SRR1643219     3  0.0000      1.000 0.000  0 1.000
#> SRR1643220     3  0.0000      1.000 0.000  0 1.000
#> SRR1643221     3  0.0000      1.000 0.000  0 1.000
#> SRR1643222     3  0.0000      1.000 0.000  0 1.000
#> SRR1643223     3  0.0000      1.000 0.000  0 1.000
#> SRR1643224     3  0.0000      1.000 0.000  0 1.000
#> SRR1643225     3  0.0000      1.000 0.000  0 1.000
#> SRR1643226     3  0.0000      1.000 0.000  0 1.000
#> SRR1643227     3  0.0000      1.000 0.000  0 1.000
#> SRR1643228     3  0.0000      1.000 0.000  0 1.000
#> SRR1643229     3  0.0000      1.000 0.000  0 1.000
#> SRR1643230     3  0.0000      1.000 0.000  0 1.000
#> SRR1643231     3  0.0000      1.000 0.000  0 1.000
#> SRR1643232     3  0.0000      1.000 0.000  0 1.000
#> SRR1643233     3  0.0000      1.000 0.000  0 1.000
#> SRR1643234     3  0.0000      1.000 0.000  0 1.000
#> SRR1643235     3  0.0000      1.000 0.000  0 1.000
#> SRR1643236     3  0.0000      1.000 0.000  0 1.000
#> SRR1643237     3  0.0000      1.000 0.000  0 1.000
#> SRR1643238     3  0.0000      1.000 0.000  0 1.000
#> SRR1643239     3  0.0000      1.000 0.000  0 1.000
#> SRR1643240     3  0.0000      1.000 0.000  0 1.000
#> SRR1643241     3  0.0000      1.000 0.000  0 1.000
#> SRR1643242     3  0.0000      1.000 0.000  0 1.000
#> SRR1643243     3  0.0000      1.000 0.000  0 1.000
#> SRR1643245     3  0.0000      1.000 0.000  0 1.000
#> SRR1643246     3  0.0000      1.000 0.000  0 1.000
#> SRR1643247     3  0.0000      1.000 0.000  0 1.000
#> SRR1643248     3  0.0000      1.000 0.000  0 1.000
#> SRR1643249     3  0.0000      1.000 0.000  0 1.000
#> SRR1643250     1  0.0000      0.998 1.000  0 0.000
#> SRR1643251     1  0.0000      0.998 1.000  0 0.000
#> SRR1643252     1  0.0000      0.998 1.000  0 0.000
#> SRR1643253     1  0.0000      0.998 1.000  0 0.000
#> SRR1643254     1  0.0000      0.998 1.000  0 0.000
#> SRR1643255     1  0.0000      0.998 1.000  0 0.000
#> SRR1643256     1  0.0000      0.998 1.000  0 0.000
#> SRR1643257     1  0.0000      0.998 1.000  0 0.000
#> SRR1643258     1  0.0000      0.998 1.000  0 0.000
#> SRR1643259     1  0.0000      0.998 1.000  0 0.000
#> SRR1643260     1  0.0000      0.998 1.000  0 0.000
#> SRR1643261     1  0.0000      0.998 1.000  0 0.000
#> SRR1643262     1  0.0000      0.998 1.000  0 0.000
#> SRR1643263     1  0.0000      0.998 1.000  0 0.000
#> SRR1643264     1  0.0000      0.998 1.000  0 0.000
#> SRR1643266     1  0.0000      0.998 1.000  0 0.000
#> SRR1643267     1  0.0000      0.998 1.000  0 0.000
#> SRR1643268     1  0.0000      0.998 1.000  0 0.000
#> SRR1643269     1  0.0000      0.998 1.000  0 0.000
#> SRR1643270     1  0.0000      0.998 1.000  0 0.000
#> SRR1643271     1  0.0000      0.998 1.000  0 0.000
#> SRR1643272     1  0.0000      0.998 1.000  0 0.000
#> SRR1643273     1  0.0000      0.998 1.000  0 0.000
#> SRR1643274     1  0.0000      0.998 1.000  0 0.000
#> SRR1643275     1  0.0000      0.998 1.000  0 0.000
#> SRR1643276     1  0.0000      0.998 1.000  0 0.000
#> SRR1643277     1  0.0000      0.998 1.000  0 0.000
#> SRR1643278     1  0.0000      0.998 1.000  0 0.000
#> SRR1643279     1  0.0000      0.998 1.000  0 0.000
#> SRR1643280     1  0.0000      0.998 1.000  0 0.000
#> SRR1643281     1  0.0000      0.998 1.000  0 0.000
#> SRR1643282     1  0.0000      0.998 1.000  0 0.000
#> SRR1643283     1  0.0000      0.998 1.000  0 0.000
#> SRR1643284     1  0.0000      0.998 1.000  0 0.000
#> SRR1643285     1  0.0000      0.998 1.000  0 0.000
#> SRR1643286     1  0.0000      0.998 1.000  0 0.000
#> SRR1643287     1  0.0000      0.998 1.000  0 0.000
#> SRR1643288     1  0.0000      0.998 1.000  0 0.000
#> SRR1643289     1  0.0000      0.998 1.000  0 0.000
#> SRR1643290     1  0.0000      0.998 1.000  0 0.000
#> SRR1643291     1  0.0000      0.998 1.000  0 0.000
#> SRR1643292     1  0.0000      0.998 1.000  0 0.000
#> SRR1643293     1  0.0000      0.998 1.000  0 0.000
#> SRR1643294     1  0.0000      0.998 1.000  0 0.000
#> SRR1643295     1  0.0000      0.998 1.000  0 0.000
#> SRR1643296     1  0.0000      0.998 1.000  0 0.000
#> SRR1643297     1  0.0000      0.998 1.000  0 0.000
#> SRR1643298     1  0.0000      0.998 1.000  0 0.000
#> SRR1643299     1  0.0000      0.998 1.000  0 0.000
#> SRR1643300     1  0.0000      0.998 1.000  0 0.000
#> SRR1643301     1  0.0000      0.998 1.000  0 0.000
#> SRR1643302     1  0.0000      0.998 1.000  0 0.000
#> SRR1643303     1  0.0000      0.998 1.000  0 0.000
#> SRR1643304     1  0.0000      0.998 1.000  0 0.000
#> SRR1643305     1  0.0000      0.998 1.000  0 0.000
#> SRR1643306     1  0.0000      0.998 1.000  0 0.000
#> SRR1643307     1  0.0000      0.998 1.000  0 0.000
#> SRR1643308     1  0.0000      0.998 1.000  0 0.000
#> SRR1643309     1  0.0000      0.998 1.000  0 0.000
#> SRR1643310     1  0.0000      0.998 1.000  0 0.000
#> SRR1643311     1  0.0000      0.998 1.000  0 0.000
#> SRR1643312     1  0.0000      0.998 1.000  0 0.000
#> SRR1643313     1  0.0000      0.998 1.000  0 0.000
#> SRR1643314     1  0.0000      0.998 1.000  0 0.000
#> SRR1643315     1  0.0000      0.998 1.000  0 0.000
#> SRR1643316     1  0.0000      0.998 1.000  0 0.000
#> SRR1643317     1  0.0000      0.998 1.000  0 0.000
#> SRR1643318     1  0.0000      0.998 1.000  0 0.000
#> SRR1643319     1  0.0000      0.998 1.000  0 0.000
#> SRR1643320     1  0.0000      0.998 1.000  0 0.000
#> SRR1643321     1  0.0000      0.998 1.000  0 0.000
#> SRR1643322     1  0.0000      0.998 1.000  0 0.000
#> SRR1643323     1  0.0000      0.998 1.000  0 0.000
#> SRR1643324     1  0.0000      0.998 1.000  0 0.000
#> SRR1643325     1  0.0000      0.998 1.000  0 0.000
#> SRR1643326     1  0.0000      0.998 1.000  0 0.000
#> SRR1643327     1  0.0000      0.998 1.000  0 0.000
#> SRR1643328     1  0.0424      0.993 0.992  0 0.008
#> SRR1643329     1  0.0424      0.993 0.992  0 0.008
#> SRR1643330     1  0.0424      0.993 0.992  0 0.008
#> SRR1643331     1  0.0237      0.996 0.996  0 0.004
#> SRR1643332     1  0.0424      0.993 0.992  0 0.008
#> SRR1643333     1  0.0237      0.996 0.996  0 0.004
#> SRR1643334     1  0.0237      0.996 0.996  0 0.004
#> SRR1643335     1  0.0237      0.996 0.996  0 0.004
#> SRR1643336     1  0.0237      0.996 0.996  0 0.004
#> SRR1643337     1  0.0237      0.996 0.996  0 0.004
#> SRR1643338     1  0.0237      0.996 0.996  0 0.004
#> SRR1643339     1  0.0237      0.996 0.996  0 0.004
#> SRR1643340     1  0.0237      0.996 0.996  0 0.004
#> SRR1643341     1  0.0237      0.996 0.996  0 0.004
#> SRR1643342     1  0.0424      0.993 0.992  0 0.008
#> SRR1643343     1  0.0000      0.998 1.000  0 0.000
#> SRR1643344     1  0.0000      0.998 1.000  0 0.000
#> SRR1643345     1  0.0000      0.998 1.000  0 0.000
#> SRR1643346     1  0.0000      0.998 1.000  0 0.000
#> SRR1643347     1  0.0000      0.998 1.000  0 0.000
#> SRR1643348     1  0.0000      0.998 1.000  0 0.000
#> SRR1643349     1  0.0000      0.998 1.000  0 0.000
#> SRR1643350     1  0.0000      0.998 1.000  0 0.000
#> SRR1643351     1  0.0000      0.998 1.000  0 0.000
#> SRR1643352     1  0.0000      0.998 1.000  0 0.000
#> SRR1643353     1  0.0000      0.998 1.000  0 0.000
#> SRR1643354     1  0.0000      0.998 1.000  0 0.000
#> SRR1643355     1  0.0000      0.998 1.000  0 0.000
#> SRR1643356     1  0.0000      0.998 1.000  0 0.000
#> SRR1643357     1  0.0000      0.998 1.000  0 0.000
#> SRR1643358     1  0.0000      0.998 1.000  0 0.000
#> SRR1643359     1  0.0000      0.998 1.000  0 0.000
#> SRR1643360     1  0.0000      0.998 1.000  0 0.000
#> SRR1643361     1  0.0000      0.998 1.000  0 0.000
#> SRR1643362     1  0.0000      0.998 1.000  0 0.000
#> SRR1643363     1  0.0000      0.998 1.000  0 0.000
#> SRR1643364     1  0.0000      0.998 1.000  0 0.000
#> SRR1643365     1  0.0000      0.998 1.000  0 0.000
#> SRR1643366     1  0.0000      0.998 1.000  0 0.000
#> SRR1643367     1  0.0000      0.998 1.000  0 0.000
#> SRR1643368     1  0.0000      0.998 1.000  0 0.000
#> SRR1643369     1  0.0000      0.998 1.000  0 0.000
#> SRR1643370     1  0.0000      0.998 1.000  0 0.000
#> SRR1643371     1  0.0000      0.998 1.000  0 0.000
#> SRR1643372     1  0.0000      0.998 1.000  0 0.000
#> SRR1643373     1  0.0000      0.998 1.000  0 0.000
#> SRR1643374     1  0.0000      0.998 1.000  0 0.000
#> SRR1643375     1  0.0000      0.998 1.000  0 0.000
#> SRR1643376     1  0.0000      0.998 1.000  0 0.000
#> SRR1643377     1  0.0000      0.998 1.000  0 0.000
#> SRR1643378     1  0.0000      0.998 1.000  0 0.000
#> SRR1643379     1  0.0000      0.998 1.000  0 0.000
#> SRR1643380     1  0.0000      0.998 1.000  0 0.000
#> SRR1643381     1  0.0000      0.998 1.000  0 0.000
#> SRR1643382     1  0.0000      0.998 1.000  0 0.000
#> SRR1643383     1  0.0000      0.998 1.000  0 0.000
#> SRR1643384     1  0.0000      0.998 1.000  0 0.000
#> SRR1643385     1  0.0000      0.998 1.000  0 0.000
#> SRR1643386     1  0.0000      0.998 1.000  0 0.000
#> SRR1643387     1  0.0000      0.998 1.000  0 0.000
#> SRR1643388     1  0.0000      0.998 1.000  0 0.000
#> SRR1643389     1  0.0000      0.998 1.000  0 0.000
#> SRR1643390     1  0.0237      0.996 0.996  0 0.004
#> SRR1643391     1  0.0000      0.998 1.000  0 0.000
#> SRR1643392     1  0.0237      0.996 0.996  0 0.004
#> SRR1643393     1  0.0000      0.998 1.000  0 0.000
#> SRR1643394     1  0.0237      0.996 0.996  0 0.004
#> SRR1643395     1  0.0237      0.996 0.996  0 0.004
#> SRR1643396     1  0.0237      0.996 0.996  0 0.004
#> SRR1643397     1  0.0000      0.998 1.000  0 0.000
#> SRR1643398     1  0.0000      0.998 1.000  0 0.000
#> SRR1643399     1  0.0000      0.998 1.000  0 0.000
#> SRR1643400     1  0.0237      0.996 0.996  0 0.004
#> SRR1643401     1  0.0000      0.998 1.000  0 0.000
#> SRR1643402     1  0.0000      0.998 1.000  0 0.000
#> SRR1643403     1  0.0000      0.998 1.000  0 0.000
#> SRR1643404     1  0.0000      0.998 1.000  0 0.000
#> SRR1643405     1  0.0424      0.993 0.992  0 0.008
#> SRR1643406     1  0.0424      0.993 0.992  0 0.008
#> SRR1643407     1  0.0424      0.993 0.992  0 0.008
#> SRR1643408     1  0.0424      0.993 0.992  0 0.008
#> SRR1643409     1  0.0237      0.996 0.996  0 0.004
#> SRR1643410     1  0.0237      0.996 0.996  0 0.004
#> SRR1643411     1  0.0424      0.993 0.992  0 0.008
#> SRR1643412     1  0.0424      0.993 0.992  0 0.008
#> SRR1643413     1  0.0424      0.993 0.992  0 0.008
#> SRR1643414     1  0.0237      0.996 0.996  0 0.004
#> SRR1643415     1  0.0424      0.993 0.992  0 0.008
#> SRR1643416     1  0.0424      0.993 0.992  0 0.008
#> SRR1643417     1  0.0424      0.993 0.992  0 0.008
#> SRR1643418     1  0.0000      0.998 1.000  0 0.000
#> SRR1643419     1  0.0000      0.998 1.000  0 0.000
#> SRR1643420     1  0.0000      0.998 1.000  0 0.000
#> SRR1643421     1  0.0000      0.998 1.000  0 0.000
#> SRR1643422     1  0.0000      0.998 1.000  0 0.000
#> SRR1643423     1  0.0000      0.998 1.000  0 0.000
#> SRR1643424     1  0.0000      0.998 1.000  0 0.000
#> SRR1643425     1  0.0000      0.998 1.000  0 0.000
#> SRR1643426     1  0.0000      0.998 1.000  0 0.000
#> SRR1643427     1  0.0000      0.998 1.000  0 0.000
#> SRR1643428     1  0.0000      0.998 1.000  0 0.000
#> SRR1643429     1  0.0000      0.998 1.000  0 0.000
#> SRR1643430     1  0.0000      0.998 1.000  0 0.000
#> SRR1643431     1  0.0000      0.998 1.000  0 0.000
#> SRR1643432     1  0.0000      0.998 1.000  0 0.000
#> SRR1643433     1  0.0000      0.998 1.000  0 0.000
#> SRR1643434     1  0.0000      0.998 1.000  0 0.000
#> SRR1643435     1  0.0000      0.998 1.000  0 0.000
#> SRR1643436     1  0.0000      0.998 1.000  0 0.000
#> SRR1643437     1  0.0000      0.998 1.000  0 0.000
#> SRR1643438     1  0.0000      0.998 1.000  0 0.000
#> SRR1643439     1  0.0000      0.998 1.000  0 0.000
#> SRR1643440     1  0.0000      0.998 1.000  0 0.000
#> SRR1643441     1  0.0000      0.998 1.000  0 0.000
#> SRR1643442     1  0.0000      0.998 1.000  0 0.000
#> SRR1643443     2  0.0000      1.000 0.000  1 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1 0.000
#> SRR1643505     2  0.0000      1.000 0.000  1 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1 0.000

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1    p2    p3    p4
#> SRR1643167     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643168     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643169     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643170     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643171     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643172     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643173     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643174     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643175     1  0.1637     0.8770 0.940 0.000 0.000 0.060
#> SRR1643176     1  0.1637     0.8770 0.940 0.000 0.000 0.060
#> SRR1643177     1  0.1716     0.8757 0.936 0.000 0.000 0.064
#> SRR1643178     1  0.1637     0.8770 0.940 0.000 0.000 0.060
#> SRR1643180     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643181     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643182     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643183     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643184     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643185     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643186     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643187     1  0.1211     0.8822 0.960 0.000 0.000 0.040
#> SRR1643188     1  0.1118     0.8831 0.964 0.000 0.000 0.036
#> SRR1643189     1  0.1118     0.8831 0.964 0.000 0.000 0.036
#> SRR1643190     1  0.1118     0.8831 0.964 0.000 0.000 0.036
#> SRR1643191     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643192     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643193     1  0.1022     0.8839 0.968 0.000 0.000 0.032
#> SRR1643194     1  0.1022     0.8839 0.968 0.000 0.000 0.032
#> SRR1643195     1  0.4072     0.6162 0.748 0.000 0.000 0.252
#> SRR1643196     1  0.4103     0.6067 0.744 0.000 0.000 0.256
#> SRR1643197     1  0.0188     0.8876 0.996 0.000 0.000 0.004
#> SRR1643198     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643199     1  0.0188     0.8876 0.996 0.000 0.000 0.004
#> SRR1643200     1  0.0188     0.8876 0.996 0.000 0.000 0.004
#> SRR1643201     1  0.1716     0.8757 0.936 0.000 0.000 0.064
#> SRR1643202     1  0.1716     0.8757 0.936 0.000 0.000 0.064
#> SRR1643203     1  0.0188     0.8876 0.996 0.000 0.000 0.004
#> SRR1643204     1  0.0188     0.8876 0.996 0.000 0.000 0.004
#> SRR1643205     3  0.0336     0.9944 0.008 0.000 0.992 0.000
#> SRR1643206     3  0.0336     0.9944 0.008 0.000 0.992 0.000
#> SRR1643207     3  0.0336     0.9944 0.008 0.000 0.992 0.000
#> SRR1643208     3  0.0336     0.9944 0.008 0.000 0.992 0.000
#> SRR1643209     3  0.0707     0.9881 0.020 0.000 0.980 0.000
#> SRR1643210     3  0.0707     0.9881 0.020 0.000 0.980 0.000
#> SRR1643211     3  0.0336     0.9944 0.008 0.000 0.992 0.000
#> SRR1643212     3  0.0336     0.9944 0.008 0.000 0.992 0.000
#> SRR1643213     3  0.0336     0.9944 0.008 0.000 0.992 0.000
#> SRR1643214     3  0.0336     0.9944 0.008 0.000 0.992 0.000
#> SRR1643215     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643216     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643217     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643218     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643219     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643220     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643221     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643222     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643223     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643224     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643225     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643226     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643227     3  0.0469     0.9926 0.012 0.000 0.988 0.000
#> SRR1643228     3  0.0469     0.9926 0.012 0.000 0.988 0.000
#> SRR1643229     3  0.0921     0.9827 0.028 0.000 0.972 0.000
#> SRR1643230     3  0.0336     0.9944 0.008 0.000 0.992 0.000
#> SRR1643231     3  0.0336     0.9944 0.008 0.000 0.992 0.000
#> SRR1643232     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643233     3  0.1211     0.9738 0.040 0.000 0.960 0.000
#> SRR1643234     3  0.1211     0.9738 0.040 0.000 0.960 0.000
#> SRR1643235     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643236     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643237     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643238     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643239     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643240     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643241     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643242     3  0.1022     0.9799 0.032 0.000 0.968 0.000
#> SRR1643243     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643245     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643246     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643247     3  0.0188     0.9948 0.004 0.000 0.996 0.000
#> SRR1643248     3  0.0592     0.9904 0.016 0.000 0.984 0.000
#> SRR1643249     3  0.1389     0.9669 0.048 0.000 0.952 0.000
#> SRR1643250     4  0.4193     0.9490 0.268 0.000 0.000 0.732
#> SRR1643251     4  0.4193     0.9490 0.268 0.000 0.000 0.732
#> SRR1643252     4  0.4193     0.9490 0.268 0.000 0.000 0.732
#> SRR1643253     4  0.4193     0.9490 0.268 0.000 0.000 0.732
#> SRR1643254     4  0.4193     0.9490 0.268 0.000 0.000 0.732
#> SRR1643255     4  0.4193     0.9490 0.268 0.000 0.000 0.732
#> SRR1643256     4  0.4193     0.9490 0.268 0.000 0.000 0.732
#> SRR1643257     4  0.4193     0.9490 0.268 0.000 0.000 0.732
#> SRR1643258     4  0.4193     0.9490 0.268 0.000 0.000 0.732
#> SRR1643259     4  0.4193     0.9490 0.268 0.000 0.000 0.732
#> SRR1643260     4  0.4193     0.9490 0.268 0.000 0.000 0.732
#> SRR1643261     4  0.4193     0.9490 0.268 0.000 0.000 0.732
#> SRR1643262     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643263     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643264     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643266     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643267     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643268     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643269     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643270     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643271     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643272     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643273     1  0.2868     0.8234 0.864 0.000 0.000 0.136
#> SRR1643274     1  0.3123     0.7974 0.844 0.000 0.000 0.156
#> SRR1643275     1  0.3024     0.8083 0.852 0.000 0.000 0.148
#> SRR1643276     1  0.3074     0.8029 0.848 0.000 0.000 0.152
#> SRR1643277     1  0.2760     0.8327 0.872 0.000 0.000 0.128
#> SRR1643278     1  0.2647     0.8412 0.880 0.000 0.000 0.120
#> SRR1643279     1  0.2814     0.8282 0.868 0.000 0.000 0.132
#> SRR1643280     1  0.3123     0.7974 0.844 0.000 0.000 0.156
#> SRR1643281     1  0.3074     0.8032 0.848 0.000 0.000 0.152
#> SRR1643282     1  0.2814     0.8282 0.868 0.000 0.000 0.132
#> SRR1643283     1  0.2589     0.8452 0.884 0.000 0.000 0.116
#> SRR1643284     1  0.3024     0.8083 0.852 0.000 0.000 0.148
#> SRR1643285     1  0.3219     0.7857 0.836 0.000 0.000 0.164
#> SRR1643286     1  0.2469     0.8524 0.892 0.000 0.000 0.108
#> SRR1643287     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643288     4  0.4103     0.9587 0.256 0.000 0.000 0.744
#> SRR1643289     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643290     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643291     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643292     4  0.4103     0.9587 0.256 0.000 0.000 0.744
#> SRR1643293     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643294     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643295     4  0.4103     0.9587 0.256 0.000 0.000 0.744
#> SRR1643296     4  0.4103     0.9587 0.256 0.000 0.000 0.744
#> SRR1643297     4  0.4103     0.9587 0.256 0.000 0.000 0.744
#> SRR1643298     4  0.4103     0.9587 0.256 0.000 0.000 0.744
#> SRR1643299     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643300     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643301     1  0.4977    -0.1784 0.540 0.000 0.000 0.460
#> SRR1643302     1  0.4730     0.2872 0.636 0.000 0.000 0.364
#> SRR1643303     1  0.4941    -0.0567 0.564 0.000 0.000 0.436
#> SRR1643304     1  0.4830     0.1677 0.608 0.000 0.000 0.392
#> SRR1643305     1  0.4746     0.2714 0.632 0.000 0.000 0.368
#> SRR1643306     1  0.4661     0.3474 0.652 0.000 0.000 0.348
#> SRR1643307     1  0.4941    -0.0583 0.564 0.000 0.000 0.436
#> SRR1643308     1  0.4679     0.3331 0.648 0.000 0.000 0.352
#> SRR1643309     1  0.4994    -0.2689 0.520 0.000 0.000 0.480
#> SRR1643310     1  0.4999    -0.3187 0.508 0.000 0.000 0.492
#> SRR1643311     1  0.4994    -0.2691 0.520 0.000 0.000 0.480
#> SRR1643312     1  0.4406     0.4983 0.700 0.000 0.000 0.300
#> SRR1643313     1  0.4948    -0.0785 0.560 0.000 0.000 0.440
#> SRR1643314     1  0.2149     0.8660 0.912 0.000 0.000 0.088
#> SRR1643315     1  0.2149     0.8660 0.912 0.000 0.000 0.088
#> SRR1643316     1  0.2149     0.8660 0.912 0.000 0.000 0.088
#> SRR1643317     1  0.2149     0.8660 0.912 0.000 0.000 0.088
#> SRR1643318     1  0.2149     0.8660 0.912 0.000 0.000 0.088
#> SRR1643319     1  0.2149     0.8660 0.912 0.000 0.000 0.088
#> SRR1643320     1  0.2149     0.8660 0.912 0.000 0.000 0.088
#> SRR1643321     1  0.2216     0.8637 0.908 0.000 0.000 0.092
#> SRR1643322     1  0.2149     0.8660 0.912 0.000 0.000 0.088
#> SRR1643323     1  0.2149     0.8660 0.912 0.000 0.000 0.088
#> SRR1643324     1  0.2216     0.8637 0.908 0.000 0.000 0.092
#> SRR1643325     1  0.2149     0.8660 0.912 0.000 0.000 0.088
#> SRR1643326     1  0.2216     0.8637 0.908 0.000 0.000 0.092
#> SRR1643327     1  0.2149     0.8660 0.912 0.000 0.000 0.088
#> SRR1643328     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643329     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643330     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643331     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643332     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643333     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643334     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643335     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643336     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643337     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643338     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643339     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643340     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643341     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643342     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643343     1  0.2408     0.8555 0.896 0.000 0.000 0.104
#> SRR1643344     1  0.2408     0.8561 0.896 0.000 0.000 0.104
#> SRR1643345     1  0.2530     0.8495 0.888 0.000 0.000 0.112
#> SRR1643346     1  0.2408     0.8561 0.896 0.000 0.000 0.104
#> SRR1643347     1  0.2345     0.8584 0.900 0.000 0.000 0.100
#> SRR1643348     1  0.2704     0.8386 0.876 0.000 0.000 0.124
#> SRR1643349     1  0.2345     0.8584 0.900 0.000 0.000 0.100
#> SRR1643350     1  0.2408     0.8561 0.896 0.000 0.000 0.104
#> SRR1643351     1  0.2345     0.8584 0.900 0.000 0.000 0.100
#> SRR1643352     1  0.2408     0.8561 0.896 0.000 0.000 0.104
#> SRR1643353     1  0.2345     0.8584 0.900 0.000 0.000 0.100
#> SRR1643354     1  0.2530     0.8500 0.888 0.000 0.000 0.112
#> SRR1643355     1  0.2530     0.8503 0.888 0.000 0.000 0.112
#> SRR1643356     1  0.2469     0.8534 0.892 0.000 0.000 0.108
#> SRR1643357     1  0.2647     0.8424 0.880 0.000 0.000 0.120
#> SRR1643358     4  0.4040     0.9591 0.248 0.000 0.000 0.752
#> SRR1643359     4  0.4103     0.9587 0.256 0.000 0.000 0.744
#> SRR1643360     4  0.4040     0.9591 0.248 0.000 0.000 0.752
#> SRR1643361     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643362     4  0.4072     0.9591 0.252 0.000 0.000 0.748
#> SRR1643363     4  0.4072     0.9591 0.252 0.000 0.000 0.748
#> SRR1643364     4  0.4040     0.9591 0.248 0.000 0.000 0.752
#> SRR1643365     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643366     4  0.4072     0.9591 0.252 0.000 0.000 0.748
#> SRR1643367     4  0.4103     0.9587 0.256 0.000 0.000 0.744
#> SRR1643368     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643369     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643370     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643371     4  0.4134     0.9573 0.260 0.000 0.000 0.740
#> SRR1643372     4  0.4040     0.9591 0.248 0.000 0.000 0.752
#> SRR1643373     4  0.3837     0.9551 0.224 0.000 0.000 0.776
#> SRR1643374     4  0.3837     0.9551 0.224 0.000 0.000 0.776
#> SRR1643375     4  0.3837     0.9551 0.224 0.000 0.000 0.776
#> SRR1643376     4  0.3837     0.9551 0.224 0.000 0.000 0.776
#> SRR1643377     4  0.3837     0.9551 0.224 0.000 0.000 0.776
#> SRR1643378     4  0.3873     0.9563 0.228 0.000 0.000 0.772
#> SRR1643379     4  0.3837     0.9551 0.224 0.000 0.000 0.776
#> SRR1643380     4  0.3837     0.9551 0.224 0.000 0.000 0.776
#> SRR1643381     4  0.3907     0.9570 0.232 0.000 0.000 0.768
#> SRR1643382     4  0.3873     0.9563 0.228 0.000 0.000 0.772
#> SRR1643383     4  0.3837     0.9551 0.224 0.000 0.000 0.776
#> SRR1643384     4  0.3873     0.9563 0.228 0.000 0.000 0.772
#> SRR1643385     4  0.3837     0.9551 0.224 0.000 0.000 0.776
#> SRR1643386     4  0.3837     0.9551 0.224 0.000 0.000 0.776
#> SRR1643387     4  0.3837     0.9551 0.224 0.000 0.000 0.776
#> SRR1643388     4  0.3837     0.9551 0.224 0.000 0.000 0.776
#> SRR1643389     4  0.3873     0.9563 0.228 0.000 0.000 0.772
#> SRR1643390     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643391     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643392     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643393     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643394     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643395     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643396     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643397     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643398     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643399     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643400     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643401     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643402     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643403     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643404     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643405     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643406     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643407     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643408     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643409     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643410     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643411     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643412     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643413     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643414     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643415     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643416     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643417     1  0.0000     0.8878 1.000 0.000 0.000 0.000
#> SRR1643418     4  0.3569     0.9367 0.196 0.000 0.000 0.804
#> SRR1643419     4  0.3569     0.9367 0.196 0.000 0.000 0.804
#> SRR1643420     4  0.3569     0.9367 0.196 0.000 0.000 0.804
#> SRR1643421     4  0.3610     0.9399 0.200 0.000 0.000 0.800
#> SRR1643422     4  0.3610     0.9399 0.200 0.000 0.000 0.800
#> SRR1643423     4  0.3610     0.9399 0.200 0.000 0.000 0.800
#> SRR1643424     4  0.3569     0.9367 0.196 0.000 0.000 0.804
#> SRR1643425     4  0.3569     0.9367 0.196 0.000 0.000 0.804
#> SRR1643426     4  0.3610     0.9399 0.200 0.000 0.000 0.800
#> SRR1643427     4  0.3610     0.9399 0.200 0.000 0.000 0.800
#> SRR1643428     4  0.3610     0.9399 0.200 0.000 0.000 0.800
#> SRR1643429     4  0.3569     0.9367 0.196 0.000 0.000 0.804
#> SRR1643430     4  0.3444     0.9251 0.184 0.000 0.000 0.816
#> SRR1643431     4  0.3444     0.9251 0.184 0.000 0.000 0.816
#> SRR1643432     4  0.3444     0.9251 0.184 0.000 0.000 0.816
#> SRR1643433     4  0.3444     0.9251 0.184 0.000 0.000 0.816
#> SRR1643434     4  0.3444     0.9251 0.184 0.000 0.000 0.816
#> SRR1643435     4  0.3444     0.9251 0.184 0.000 0.000 0.816
#> SRR1643436     4  0.3444     0.9251 0.184 0.000 0.000 0.816
#> SRR1643437     4  0.3444     0.9251 0.184 0.000 0.000 0.816
#> SRR1643438     4  0.3444     0.9251 0.184 0.000 0.000 0.816
#> SRR1643439     4  0.3444     0.9251 0.184 0.000 0.000 0.816
#> SRR1643440     4  0.3444     0.9251 0.184 0.000 0.000 0.816
#> SRR1643441     4  0.3444     0.9251 0.184 0.000 0.000 0.816
#> SRR1643442     4  0.3444     0.9251 0.184 0.000 0.000 0.816
#> SRR1643443     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643444     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643445     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643446     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643447     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643448     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643449     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643450     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643451     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643452     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643453     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643454     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643455     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643456     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643457     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643458     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643459     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643460     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643461     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643462     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643463     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643464     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643466     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643467     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643468     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643469     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643470     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643471     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643472     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643473     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643474     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643475     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643477     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643478     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643479     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643480     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643481     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643482     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643483     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643484     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643485     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643486     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643487     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643488     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643489     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643490     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643491     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643492     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643493     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643494     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643495     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643496     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643497     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643498     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643499     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643500     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643501     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643502     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643503     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643504     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643505     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643506     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643507     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643508     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643509     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643510     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643511     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643512     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643513     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643531     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643532     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643533     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643534     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643535     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643536     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643537     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643538     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643539     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643540     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643541     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643542     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643543     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643544     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643514     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643515     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643516     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643517     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643518     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643519     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643520     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643521     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643522     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643523     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643524     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643525     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643526     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643527     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643528     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643529     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643530     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643545     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643546     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643547     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643548     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643549     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643550     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643551     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643552     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643553     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643554     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643555     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643556     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643558     2  0.0000     0.9871 0.000 1.000 0.000 0.000
#> SRR1643559     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643560     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643561     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643562     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643563     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643564     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643565     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643566     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643567     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643568     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643569     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643570     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643571     2  0.1022     0.9847 0.000 0.968 0.000 0.032
#> SRR1643572     2  0.1022     0.9847 0.000 0.968 0.000 0.032

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1    p2    p3    p4    p5
#> SRR1643167     1  0.1892     0.8924 0.916 0.000 0.000 0.004 0.080
#> SRR1643168     1  0.1892     0.8924 0.916 0.000 0.000 0.004 0.080
#> SRR1643169     1  0.1892     0.8924 0.916 0.000 0.000 0.004 0.080
#> SRR1643170     1  0.2052     0.8913 0.912 0.000 0.004 0.004 0.080
#> SRR1643171     1  0.2130     0.8857 0.908 0.000 0.012 0.000 0.080
#> SRR1643172     1  0.2130     0.8857 0.908 0.000 0.012 0.000 0.080
#> SRR1643173     1  0.2130     0.8857 0.908 0.000 0.012 0.000 0.080
#> SRR1643174     1  0.2130     0.8857 0.908 0.000 0.012 0.000 0.080
#> SRR1643175     1  0.1981     0.8993 0.920 0.000 0.000 0.016 0.064
#> SRR1643176     1  0.2079     0.8994 0.916 0.000 0.000 0.020 0.064
#> SRR1643177     1  0.2079     0.9002 0.916 0.000 0.000 0.020 0.064
#> SRR1643178     1  0.2079     0.9002 0.916 0.000 0.000 0.020 0.064
#> SRR1643180     1  0.2189     0.8840 0.904 0.000 0.012 0.000 0.084
#> SRR1643181     1  0.2189     0.8840 0.904 0.000 0.012 0.000 0.084
#> SRR1643182     1  0.2293     0.8822 0.900 0.000 0.016 0.000 0.084
#> SRR1643183     1  0.2248     0.8825 0.900 0.000 0.012 0.000 0.088
#> SRR1643184     1  0.2248     0.8825 0.900 0.000 0.012 0.000 0.088
#> SRR1643185     1  0.2351     0.8804 0.896 0.000 0.016 0.000 0.088
#> SRR1643186     1  0.2248     0.8825 0.900 0.000 0.012 0.000 0.088
#> SRR1643187     1  0.1845     0.9002 0.928 0.000 0.000 0.016 0.056
#> SRR1643188     1  0.1809     0.8998 0.928 0.000 0.000 0.012 0.060
#> SRR1643189     1  0.1845     0.9002 0.928 0.000 0.000 0.016 0.056
#> SRR1643190     1  0.1845     0.9002 0.928 0.000 0.000 0.016 0.056
#> SRR1643191     1  0.2289     0.8869 0.904 0.000 0.012 0.004 0.080
#> SRR1643192     1  0.2289     0.8869 0.904 0.000 0.012 0.004 0.080
#> SRR1643193     1  0.2270     0.8945 0.904 0.000 0.000 0.020 0.076
#> SRR1643194     1  0.2172     0.8942 0.908 0.000 0.000 0.016 0.076
#> SRR1643195     1  0.5420     0.4248 0.592 0.000 0.000 0.332 0.076
#> SRR1643196     1  0.5390     0.4457 0.600 0.000 0.000 0.324 0.076
#> SRR1643197     1  0.1877     0.8988 0.924 0.000 0.000 0.012 0.064
#> SRR1643198     1  0.1877     0.8988 0.924 0.000 0.000 0.012 0.064
#> SRR1643199     1  0.2362     0.8893 0.900 0.000 0.008 0.008 0.084
#> SRR1643200     1  0.2362     0.8893 0.900 0.000 0.008 0.008 0.084
#> SRR1643201     1  0.2491     0.8926 0.896 0.000 0.000 0.036 0.068
#> SRR1643202     1  0.2491     0.8926 0.896 0.000 0.000 0.036 0.068
#> SRR1643203     1  0.1764     0.8982 0.928 0.000 0.000 0.008 0.064
#> SRR1643204     1  0.1764     0.8982 0.928 0.000 0.000 0.008 0.064
#> SRR1643205     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643206     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643207     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643208     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643209     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643210     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643211     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643212     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643213     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643214     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643215     3  0.0162     0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643216     3  0.0162     0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643217     3  0.0162     0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643218     3  0.0162     0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643219     3  0.0162     0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643220     3  0.0162     0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643221     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643222     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643223     3  0.0162     0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643224     3  0.0162     0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643225     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643226     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643227     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643228     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643229     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643230     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643231     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643232     3  0.0162     0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643233     3  0.0451     0.9912 0.008 0.000 0.988 0.000 0.004
#> SRR1643234     3  0.0451     0.9912 0.008 0.000 0.988 0.000 0.004
#> SRR1643235     3  0.0162     0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643236     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643237     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643238     3  0.0162     0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643239     3  0.0162     0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643240     3  0.0162     0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643241     3  0.0162     0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643242     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643243     3  0.0162     0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643245     3  0.0162     0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643246     3  0.0162     0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643247     3  0.0162     0.9977 0.000 0.000 0.996 0.000 0.004
#> SRR1643248     3  0.0000     0.9980 0.000 0.000 1.000 0.000 0.000
#> SRR1643249     3  0.1195     0.9720 0.012 0.000 0.960 0.000 0.028
#> SRR1643250     4  0.2574     0.9053 0.112 0.000 0.000 0.876 0.012
#> SRR1643251     4  0.2624     0.9021 0.116 0.000 0.000 0.872 0.012
#> SRR1643252     4  0.2624     0.9021 0.116 0.000 0.000 0.872 0.012
#> SRR1643253     4  0.2624     0.9021 0.116 0.000 0.000 0.872 0.012
#> SRR1643254     4  0.2818     0.8874 0.132 0.000 0.000 0.856 0.012
#> SRR1643255     4  0.2624     0.9021 0.116 0.000 0.000 0.872 0.012
#> SRR1643256     4  0.2624     0.9021 0.116 0.000 0.000 0.872 0.012
#> SRR1643257     4  0.2624     0.9021 0.116 0.000 0.000 0.872 0.012
#> SRR1643258     4  0.2574     0.9053 0.112 0.000 0.000 0.876 0.012
#> SRR1643259     4  0.2723     0.8952 0.124 0.000 0.000 0.864 0.012
#> SRR1643260     4  0.2624     0.9021 0.116 0.000 0.000 0.872 0.012
#> SRR1643261     4  0.2624     0.9021 0.116 0.000 0.000 0.872 0.012
#> SRR1643262     4  0.2464     0.9153 0.096 0.000 0.000 0.888 0.016
#> SRR1643263     4  0.2464     0.9153 0.096 0.000 0.000 0.888 0.016
#> SRR1643264     4  0.2408     0.9169 0.092 0.000 0.000 0.892 0.016
#> SRR1643266     4  0.2408     0.9169 0.092 0.000 0.000 0.892 0.016
#> SRR1643267     4  0.2464     0.9153 0.096 0.000 0.000 0.888 0.016
#> SRR1643268     4  0.2408     0.9169 0.092 0.000 0.000 0.892 0.016
#> SRR1643269     4  0.2464     0.9153 0.096 0.000 0.000 0.888 0.016
#> SRR1643270     4  0.2505     0.9163 0.092 0.000 0.000 0.888 0.020
#> SRR1643271     4  0.2408     0.9169 0.092 0.000 0.000 0.892 0.016
#> SRR1643272     4  0.2505     0.9163 0.092 0.000 0.000 0.888 0.020
#> SRR1643273     1  0.3477     0.8477 0.832 0.000 0.000 0.112 0.056
#> SRR1643274     1  0.3669     0.8309 0.816 0.000 0.000 0.128 0.056
#> SRR1643275     1  0.3593     0.8436 0.824 0.000 0.000 0.116 0.060
#> SRR1643276     1  0.3477     0.8477 0.832 0.000 0.000 0.112 0.056
#> SRR1643277     1  0.3269     0.8617 0.848 0.000 0.000 0.096 0.056
#> SRR1643278     1  0.3159     0.8680 0.856 0.000 0.000 0.088 0.056
#> SRR1643279     1  0.3390     0.8586 0.840 0.000 0.000 0.100 0.060
#> SRR1643280     1  0.3527     0.8437 0.828 0.000 0.000 0.116 0.056
#> SRR1643281     1  0.3575     0.8399 0.824 0.000 0.000 0.120 0.056
#> SRR1643282     1  0.3336     0.8619 0.844 0.000 0.000 0.096 0.060
#> SRR1643283     1  0.3159     0.8678 0.856 0.000 0.000 0.088 0.056
#> SRR1643284     1  0.3622     0.8358 0.820 0.000 0.000 0.124 0.056
#> SRR1643285     1  0.3622     0.8354 0.820 0.000 0.000 0.124 0.056
#> SRR1643286     1  0.3102     0.8704 0.860 0.000 0.000 0.084 0.056
#> SRR1643287     4  0.2793     0.9066 0.088 0.000 0.000 0.876 0.036
#> SRR1643288     4  0.2554     0.9147 0.072 0.000 0.000 0.892 0.036
#> SRR1643289     4  0.2654     0.9125 0.084 0.000 0.000 0.884 0.032
#> SRR1643290     4  0.2535     0.9153 0.076 0.000 0.000 0.892 0.032
#> SRR1643291     4  0.2676     0.9117 0.080 0.000 0.000 0.884 0.036
#> SRR1643292     4  0.2554     0.9147 0.072 0.000 0.000 0.892 0.036
#> SRR1643293     4  0.2793     0.9077 0.088 0.000 0.000 0.876 0.036
#> SRR1643294     4  0.2793     0.9066 0.088 0.000 0.000 0.876 0.036
#> SRR1643295     4  0.2793     0.9066 0.088 0.000 0.000 0.876 0.036
#> SRR1643296     4  0.2654     0.9116 0.084 0.000 0.000 0.884 0.032
#> SRR1643297     4  0.2616     0.9129 0.076 0.000 0.000 0.888 0.036
#> SRR1643298     4  0.2735     0.9092 0.084 0.000 0.000 0.880 0.036
#> SRR1643299     4  0.2595     0.9136 0.080 0.000 0.000 0.888 0.032
#> SRR1643300     4  0.2793     0.9077 0.088 0.000 0.000 0.876 0.036
#> SRR1643301     4  0.4767     0.3167 0.420 0.000 0.000 0.560 0.020
#> SRR1643302     1  0.4821     0.0565 0.516 0.000 0.000 0.464 0.020
#> SRR1643303     4  0.4803     0.2314 0.444 0.000 0.000 0.536 0.020
#> SRR1643304     4  0.4829     0.0866 0.480 0.000 0.000 0.500 0.020
#> SRR1643305     1  0.4824     0.0370 0.512 0.000 0.000 0.468 0.020
#> SRR1643306     1  0.4821     0.0507 0.516 0.000 0.000 0.464 0.020
#> SRR1643307     4  0.4787     0.2744 0.432 0.000 0.000 0.548 0.020
#> SRR1643308     1  0.4815     0.0917 0.524 0.000 0.000 0.456 0.020
#> SRR1643309     4  0.4697     0.4083 0.388 0.000 0.000 0.592 0.020
#> SRR1643310     4  0.4626     0.4675 0.364 0.000 0.000 0.616 0.020
#> SRR1643311     4  0.4686     0.4180 0.384 0.000 0.000 0.596 0.020
#> SRR1643312     1  0.4726     0.3021 0.580 0.000 0.000 0.400 0.020
#> SRR1643313     4  0.4807     0.2217 0.448 0.000 0.000 0.532 0.020
#> SRR1643314     1  0.1661     0.9055 0.940 0.000 0.000 0.036 0.024
#> SRR1643315     1  0.1750     0.9052 0.936 0.000 0.000 0.036 0.028
#> SRR1643316     1  0.1918     0.9044 0.928 0.000 0.000 0.036 0.036
#> SRR1643317     1  0.1836     0.9049 0.932 0.000 0.000 0.036 0.032
#> SRR1643318     1  0.1661     0.9055 0.940 0.000 0.000 0.036 0.024
#> SRR1643319     1  0.1918     0.9043 0.928 0.000 0.000 0.036 0.036
#> SRR1643320     1  0.1750     0.9052 0.936 0.000 0.000 0.036 0.028
#> SRR1643321     1  0.1750     0.9052 0.936 0.000 0.000 0.036 0.028
#> SRR1643322     1  0.1918     0.9043 0.928 0.000 0.000 0.036 0.036
#> SRR1643323     1  0.1836     0.9048 0.932 0.000 0.000 0.036 0.032
#> SRR1643324     1  0.1836     0.9048 0.932 0.000 0.000 0.036 0.032
#> SRR1643325     1  0.1750     0.9052 0.936 0.000 0.000 0.036 0.028
#> SRR1643326     1  0.1661     0.9056 0.940 0.000 0.000 0.036 0.024
#> SRR1643327     1  0.1836     0.9048 0.932 0.000 0.000 0.036 0.032
#> SRR1643328     1  0.0324     0.9050 0.992 0.000 0.004 0.000 0.004
#> SRR1643329     1  0.0451     0.9047 0.988 0.000 0.004 0.000 0.008
#> SRR1643330     1  0.0162     0.9051 0.996 0.000 0.004 0.000 0.000
#> SRR1643331     1  0.0162     0.9051 0.996 0.000 0.004 0.000 0.000
#> SRR1643332     1  0.0324     0.9047 0.992 0.000 0.004 0.000 0.004
#> SRR1643333     1  0.0324     0.9050 0.992 0.000 0.004 0.000 0.004
#> SRR1643334     1  0.0162     0.9051 0.996 0.000 0.004 0.000 0.000
#> SRR1643335     1  0.0162     0.9051 0.996 0.000 0.004 0.000 0.000
#> SRR1643336     1  0.0324     0.9047 0.992 0.000 0.004 0.000 0.004
#> SRR1643337     1  0.0162     0.9051 0.996 0.000 0.004 0.000 0.000
#> SRR1643338     1  0.0324     0.9050 0.992 0.000 0.004 0.000 0.004
#> SRR1643339     1  0.0162     0.9051 0.996 0.000 0.004 0.000 0.000
#> SRR1643340     1  0.0324     0.9050 0.992 0.000 0.004 0.000 0.004
#> SRR1643341     1  0.0162     0.9051 0.996 0.000 0.004 0.000 0.000
#> SRR1643342     1  0.0324     0.9050 0.992 0.000 0.004 0.000 0.004
#> SRR1643343     1  0.3758     0.8492 0.816 0.000 0.000 0.096 0.088
#> SRR1643344     1  0.3754     0.8479 0.816 0.000 0.000 0.100 0.084
#> SRR1643345     1  0.3704     0.8529 0.820 0.000 0.000 0.092 0.088
#> SRR1643346     1  0.3648     0.8550 0.824 0.000 0.000 0.092 0.084
#> SRR1643347     1  0.3536     0.8610 0.832 0.000 0.000 0.084 0.084
#> SRR1643348     1  0.3862     0.8417 0.808 0.000 0.000 0.104 0.088
#> SRR1643349     1  0.3649     0.8561 0.824 0.000 0.000 0.088 0.088
#> SRR1643350     1  0.3648     0.8550 0.824 0.000 0.000 0.092 0.084
#> SRR1643351     1  0.3420     0.8666 0.840 0.000 0.000 0.076 0.084
#> SRR1643352     1  0.3648     0.8548 0.824 0.000 0.000 0.092 0.084
#> SRR1643353     1  0.3593     0.8580 0.828 0.000 0.000 0.088 0.084
#> SRR1643354     1  0.3758     0.8492 0.816 0.000 0.000 0.096 0.088
#> SRR1643355     1  0.3955     0.8321 0.800 0.000 0.000 0.116 0.084
#> SRR1643356     1  0.3702     0.8513 0.820 0.000 0.000 0.096 0.084
#> SRR1643357     1  0.3810     0.8455 0.812 0.000 0.000 0.100 0.088
#> SRR1643358     4  0.1877     0.9234 0.064 0.000 0.000 0.924 0.012
#> SRR1643359     4  0.2270     0.9219 0.076 0.000 0.000 0.904 0.020
#> SRR1643360     4  0.1942     0.9236 0.068 0.000 0.000 0.920 0.012
#> SRR1643361     4  0.2208     0.9223 0.072 0.000 0.000 0.908 0.020
#> SRR1643362     4  0.1981     0.9231 0.064 0.000 0.000 0.920 0.016
#> SRR1643363     4  0.2046     0.9231 0.068 0.000 0.000 0.916 0.016
#> SRR1643364     4  0.1981     0.9231 0.064 0.000 0.000 0.920 0.016
#> SRR1643365     4  0.2270     0.9221 0.076 0.000 0.000 0.904 0.020
#> SRR1643366     4  0.1942     0.9235 0.068 0.000 0.000 0.920 0.012
#> SRR1643367     4  0.2270     0.9219 0.076 0.000 0.000 0.904 0.020
#> SRR1643368     4  0.2208     0.9223 0.072 0.000 0.000 0.908 0.020
#> SRR1643369     4  0.2172     0.9222 0.076 0.000 0.000 0.908 0.016
#> SRR1643370     4  0.2270     0.9219 0.076 0.000 0.000 0.904 0.020
#> SRR1643371     4  0.2172     0.9220 0.076 0.000 0.000 0.908 0.016
#> SRR1643372     4  0.1981     0.9231 0.064 0.000 0.000 0.920 0.016
#> SRR1643373     4  0.1408     0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643374     4  0.1522     0.9219 0.044 0.000 0.000 0.944 0.012
#> SRR1643375     4  0.1408     0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643376     4  0.1408     0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643377     4  0.1408     0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643378     4  0.1522     0.9219 0.044 0.000 0.000 0.944 0.012
#> SRR1643379     4  0.1408     0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643380     4  0.1522     0.9219 0.044 0.000 0.000 0.944 0.012
#> SRR1643381     4  0.1557     0.9233 0.052 0.000 0.000 0.940 0.008
#> SRR1643382     4  0.1408     0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643383     4  0.1522     0.9219 0.044 0.000 0.000 0.944 0.012
#> SRR1643384     4  0.1408     0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643385     4  0.1522     0.9219 0.044 0.000 0.000 0.944 0.012
#> SRR1643386     4  0.1408     0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643387     4  0.1408     0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643388     4  0.1408     0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643389     4  0.1408     0.9217 0.044 0.000 0.000 0.948 0.008
#> SRR1643390     1  0.1444     0.9041 0.948 0.000 0.000 0.012 0.040
#> SRR1643391     1  0.1364     0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643392     1  0.1251     0.9040 0.956 0.000 0.000 0.008 0.036
#> SRR1643393     1  0.1364     0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643394     1  0.1364     0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643395     1  0.1364     0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643396     1  0.1364     0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643397     1  0.1364     0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643398     1  0.1364     0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643399     1  0.1364     0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643400     1  0.1364     0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643401     1  0.1364     0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643402     1  0.1364     0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643403     1  0.1364     0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643404     1  0.1364     0.9048 0.952 0.000 0.000 0.012 0.036
#> SRR1643405     1  0.1697     0.9001 0.932 0.000 0.000 0.008 0.060
#> SRR1643406     1  0.1697     0.9001 0.932 0.000 0.000 0.008 0.060
#> SRR1643407     1  0.1697     0.9001 0.932 0.000 0.000 0.008 0.060
#> SRR1643408     1  0.1764     0.8992 0.928 0.000 0.000 0.008 0.064
#> SRR1643409     1  0.1557     0.9015 0.940 0.000 0.000 0.008 0.052
#> SRR1643410     1  0.1697     0.9001 0.932 0.000 0.000 0.008 0.060
#> SRR1643411     1  0.1697     0.9001 0.932 0.000 0.000 0.008 0.060
#> SRR1643412     1  0.1697     0.9001 0.932 0.000 0.000 0.008 0.060
#> SRR1643413     1  0.1628     0.9008 0.936 0.000 0.000 0.008 0.056
#> SRR1643414     1  0.1628     0.9008 0.936 0.000 0.000 0.008 0.056
#> SRR1643415     1  0.1697     0.9001 0.932 0.000 0.000 0.008 0.060
#> SRR1643416     1  0.1697     0.9001 0.932 0.000 0.000 0.008 0.060
#> SRR1643417     1  0.1697     0.9001 0.932 0.000 0.000 0.008 0.060
#> SRR1643418     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643419     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643420     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643421     4  0.0703     0.9114 0.024 0.000 0.000 0.976 0.000
#> SRR1643422     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643423     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643424     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643425     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643426     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643427     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643428     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643429     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643430     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643431     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643432     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643433     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643434     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643435     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643436     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643437     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643438     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643439     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643440     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643441     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643442     4  0.0609     0.9092 0.020 0.000 0.000 0.980 0.000
#> SRR1643443     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643444     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643445     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643446     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643447     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643448     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643449     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643450     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643451     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643452     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643453     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643454     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643455     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643456     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643457     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643458     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643459     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643460     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643461     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643462     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643463     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643464     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643466     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643467     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643468     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643469     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643470     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643471     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643472     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643473     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643474     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643475     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643477     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643478     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643479     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643480     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643481     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643482     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643483     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643484     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643485     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643486     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643487     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643488     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643489     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643490     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643491     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643492     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643493     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643494     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643495     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643496     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643497     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643498     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643499     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643500     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643501     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643502     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643503     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643504     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643505     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643506     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643507     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643508     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643509     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643510     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643511     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643512     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643513     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643531     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643532     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643533     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643534     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643535     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643536     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643537     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643538     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643539     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643540     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643541     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643542     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643543     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643544     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643514     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643515     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643516     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643517     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643518     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643519     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643520     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643521     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643522     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643523     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643524     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643525     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643526     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643527     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643528     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643529     2  0.0162     0.8754 0.000 0.996 0.000 0.000 0.004
#> SRR1643530     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643545     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643546     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643547     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643548     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643549     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643550     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643551     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643552     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643553     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643554     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643555     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643556     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643558     2  0.3395     0.8986 0.000 0.764 0.000 0.000 0.236
#> SRR1643559     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643560     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643561     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643562     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643563     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643564     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643565     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643566     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643567     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643568     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643569     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643570     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643571     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000
#> SRR1643572     2  0.0000     0.8769 0.000 1.000 0.000 0.000 0.000

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2    p3    p4    p5 p6
#> SRR1643167     1  0.5947     0.6040 0.524 0.000 0.008 0.004 0.284 NA
#> SRR1643168     1  0.5933     0.6071 0.528 0.000 0.008 0.004 0.280 NA
#> SRR1643169     1  0.5908     0.6103 0.532 0.000 0.008 0.004 0.280 NA
#> SRR1643170     1  0.5947     0.6040 0.524 0.000 0.008 0.004 0.284 NA
#> SRR1643171     1  0.6035     0.6018 0.520 0.000 0.012 0.004 0.284 NA
#> SRR1643172     1  0.6035     0.6018 0.520 0.000 0.012 0.004 0.284 NA
#> SRR1643173     1  0.6035     0.6018 0.520 0.000 0.012 0.004 0.284 NA
#> SRR1643174     1  0.6035     0.6018 0.520 0.000 0.012 0.004 0.284 NA
#> SRR1643175     1  0.5333     0.6321 0.564 0.000 0.000 0.000 0.300 NA
#> SRR1643176     1  0.5304     0.6367 0.572 0.000 0.000 0.000 0.292 NA
#> SRR1643177     1  0.5319     0.6341 0.568 0.000 0.000 0.000 0.296 NA
#> SRR1643178     1  0.5333     0.6320 0.564 0.000 0.000 0.000 0.300 NA
#> SRR1643180     1  0.6163     0.5669 0.484 0.000 0.020 0.000 0.312 NA
#> SRR1643181     1  0.6163     0.5669 0.484 0.000 0.020 0.000 0.312 NA
#> SRR1643182     1  0.6163     0.5669 0.484 0.000 0.020 0.000 0.312 NA
#> SRR1643183     1  0.6121     0.5641 0.480 0.000 0.016 0.000 0.316 NA
#> SRR1643184     1  0.6121     0.5641 0.480 0.000 0.016 0.000 0.316 NA
#> SRR1643185     1  0.6121     0.5641 0.480 0.000 0.016 0.000 0.316 NA
#> SRR1643186     1  0.6121     0.5641 0.480 0.000 0.016 0.000 0.316 NA
#> SRR1643187     1  0.5466     0.6521 0.596 0.000 0.000 0.008 0.240 NA
#> SRR1643188     1  0.5466     0.6521 0.596 0.000 0.000 0.008 0.240 NA
#> SRR1643189     1  0.5466     0.6521 0.596 0.000 0.000 0.008 0.240 NA
#> SRR1643190     1  0.5466     0.6521 0.596 0.000 0.000 0.008 0.240 NA
#> SRR1643191     1  0.5933     0.6101 0.532 0.000 0.016 0.000 0.276 NA
#> SRR1643192     1  0.5908     0.6133 0.536 0.000 0.016 0.000 0.276 NA
#> SRR1643193     1  0.5861     0.6100 0.536 0.000 0.000 0.012 0.272 NA
#> SRR1643194     1  0.5861     0.6100 0.536 0.000 0.000 0.012 0.272 NA
#> SRR1643195     5  0.7372    -0.0544 0.280 0.000 0.000 0.148 0.384 NA
#> SRR1643196     5  0.7393    -0.0544 0.280 0.000 0.000 0.152 0.380 NA
#> SRR1643197     1  0.5612     0.6329 0.564 0.000 0.008 0.000 0.272 NA
#> SRR1643198     1  0.5612     0.6329 0.564 0.000 0.008 0.000 0.272 NA
#> SRR1643199     1  0.5978     0.5864 0.504 0.000 0.012 0.000 0.300 NA
#> SRR1643200     1  0.5978     0.5864 0.504 0.000 0.012 0.000 0.300 NA
#> SRR1643201     1  0.6271     0.5594 0.484 0.000 0.004 0.020 0.312 NA
#> SRR1643202     1  0.6271     0.5594 0.484 0.000 0.004 0.020 0.312 NA
#> SRR1643203     1  0.5592     0.6402 0.576 0.000 0.004 0.004 0.260 NA
#> SRR1643204     1  0.5592     0.6402 0.576 0.000 0.004 0.004 0.260 NA
#> SRR1643205     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643206     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643207     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643208     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643209     3  0.0146     0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643210     3  0.0146     0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643211     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643212     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643213     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643214     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643215     3  0.0146     0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643216     3  0.0146     0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643217     3  0.0146     0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643218     3  0.0146     0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643219     3  0.0146     0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643220     3  0.0146     0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643221     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643222     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643223     3  0.0146     0.9965 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643224     3  0.0146     0.9965 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643225     3  0.0146     0.9965 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643226     3  0.0146     0.9965 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643227     3  0.0146     0.9965 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643228     3  0.0146     0.9965 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643229     3  0.0146     0.9965 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643230     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643231     3  0.0146     0.9965 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643232     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643233     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643234     3  0.0146     0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643235     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643236     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643237     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643238     3  0.0146     0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643239     3  0.0146     0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643240     3  0.0146     0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643241     3  0.0146     0.9969 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643242     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643243     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643245     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643246     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643247     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643248     3  0.0000     0.9976 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643249     3  0.1549     0.9504 0.000 0.000 0.936 0.000 0.044 NA
#> SRR1643250     4  0.4576     0.6844 0.016 0.000 0.000 0.504 0.468 NA
#> SRR1643251     4  0.4649     0.6785 0.020 0.000 0.000 0.504 0.464 NA
#> SRR1643252     4  0.4576     0.6844 0.016 0.000 0.000 0.504 0.468 NA
#> SRR1643253     4  0.4656     0.6758 0.016 0.000 0.000 0.500 0.468 NA
#> SRR1643254     4  0.4650     0.6730 0.020 0.000 0.000 0.500 0.468 NA
#> SRR1643255     4  0.4649     0.6785 0.020 0.000 0.000 0.504 0.464 NA
#> SRR1643256     4  0.4649     0.6785 0.020 0.000 0.000 0.504 0.464 NA
#> SRR1643257     4  0.4576     0.6844 0.016 0.000 0.000 0.504 0.468 NA
#> SRR1643258     4  0.4654     0.6806 0.016 0.000 0.000 0.504 0.464 NA
#> SRR1643259     4  0.4649     0.6785 0.020 0.000 0.000 0.504 0.464 NA
#> SRR1643260     4  0.4650     0.6730 0.020 0.000 0.000 0.500 0.468 NA
#> SRR1643261     4  0.4649     0.6785 0.020 0.000 0.000 0.504 0.464 NA
#> SRR1643262     4  0.4411     0.6998 0.008 0.000 0.000 0.504 0.476 NA
#> SRR1643263     4  0.4406     0.7084 0.008 0.000 0.000 0.516 0.464 NA
#> SRR1643264     4  0.4411     0.7024 0.008 0.000 0.000 0.504 0.476 NA
#> SRR1643266     4  0.4412     0.7070 0.008 0.000 0.000 0.500 0.480 NA
#> SRR1643267     4  0.4410     0.7054 0.008 0.000 0.000 0.508 0.472 NA
#> SRR1643268     4  0.4413     0.6921 0.008 0.000 0.000 0.496 0.484 NA
#> SRR1643269     4  0.4403     0.7099 0.008 0.000 0.000 0.520 0.460 NA
#> SRR1643270     4  0.4406     0.7093 0.008 0.000 0.000 0.516 0.464 NA
#> SRR1643271     4  0.4488     0.7102 0.008 0.000 0.000 0.508 0.468 NA
#> SRR1643272     4  0.4411     0.6999 0.008 0.000 0.000 0.504 0.476 NA
#> SRR1643273     1  0.3161     0.7253 0.848 0.000 0.000 0.020 0.040 NA
#> SRR1643274     1  0.3358     0.7183 0.836 0.000 0.000 0.024 0.044 NA
#> SRR1643275     1  0.3142     0.7258 0.848 0.000 0.000 0.016 0.044 NA
#> SRR1643276     1  0.3191     0.7236 0.844 0.000 0.000 0.016 0.044 NA
#> SRR1643277     1  0.3172     0.7242 0.844 0.000 0.000 0.016 0.040 NA
#> SRR1643278     1  0.3142     0.7287 0.848 0.000 0.000 0.016 0.044 NA
#> SRR1643279     1  0.3351     0.7173 0.840 0.000 0.000 0.028 0.048 NA
#> SRR1643280     1  0.3142     0.7255 0.848 0.000 0.000 0.016 0.044 NA
#> SRR1643281     1  0.3453     0.7144 0.828 0.000 0.000 0.024 0.044 NA
#> SRR1643282     1  0.2973     0.7311 0.860 0.000 0.000 0.016 0.040 NA
#> SRR1643283     1  0.3228     0.7263 0.844 0.000 0.000 0.020 0.044 NA
#> SRR1643284     1  0.3423     0.7148 0.832 0.000 0.000 0.024 0.048 NA
#> SRR1643285     1  0.3509     0.7119 0.824 0.000 0.000 0.028 0.040 NA
#> SRR1643286     1  0.2797     0.7366 0.872 0.000 0.000 0.016 0.036 NA
#> SRR1643287     4  0.5946     0.5895 0.080 0.000 0.000 0.488 0.384 NA
#> SRR1643288     4  0.5882     0.6005 0.080 0.000 0.000 0.500 0.376 NA
#> SRR1643289     4  0.5667     0.6266 0.060 0.000 0.000 0.516 0.380 NA
#> SRR1643290     4  0.5846     0.6064 0.076 0.000 0.000 0.500 0.380 NA
#> SRR1643291     4  0.5888     0.6010 0.080 0.000 0.000 0.496 0.380 NA
#> SRR1643292     4  0.5852     0.6017 0.076 0.000 0.000 0.496 0.384 NA
#> SRR1643293     4  0.6004     0.5742 0.092 0.000 0.000 0.484 0.380 NA
#> SRR1643294     4  0.6088     0.5638 0.096 0.000 0.000 0.480 0.376 NA
#> SRR1643295     4  0.6019     0.5758 0.088 0.000 0.000 0.484 0.380 NA
#> SRR1643296     4  0.5852     0.6007 0.076 0.000 0.000 0.496 0.384 NA
#> SRR1643297     4  0.5928     0.5878 0.084 0.000 0.000 0.492 0.380 NA
#> SRR1643298     4  0.5846     0.6013 0.076 0.000 0.000 0.500 0.380 NA
#> SRR1643299     4  0.5766     0.6177 0.068 0.000 0.000 0.504 0.384 NA
#> SRR1643300     4  0.5810     0.6060 0.072 0.000 0.000 0.500 0.384 NA
#> SRR1643301     4  0.6282     0.2282 0.280 0.000 0.000 0.436 0.272 NA
#> SRR1643302     4  0.6444     0.0529 0.364 0.000 0.000 0.380 0.236 NA
#> SRR1643303     4  0.6401     0.1896 0.300 0.000 0.000 0.412 0.272 NA
#> SRR1643304     4  0.6315     0.1058 0.336 0.000 0.000 0.404 0.248 NA
#> SRR1643305     4  0.6455     0.0967 0.332 0.000 0.000 0.400 0.248 NA
#> SRR1643306     4  0.6441     0.1290 0.320 0.000 0.000 0.412 0.248 NA
#> SRR1643307     4  0.6217     0.2371 0.272 0.000 0.000 0.432 0.288 NA
#> SRR1643308     4  0.6300     0.0570 0.360 0.000 0.000 0.392 0.236 NA
#> SRR1643309     4  0.6222     0.2987 0.240 0.000 0.000 0.452 0.296 NA
#> SRR1643310     4  0.6267     0.3326 0.224 0.000 0.000 0.452 0.308 NA
#> SRR1643311     4  0.6211     0.3134 0.232 0.000 0.000 0.452 0.304 NA
#> SRR1643312     1  0.6421    -0.2902 0.400 0.000 0.000 0.368 0.208 NA
#> SRR1643313     4  0.6292     0.2277 0.276 0.000 0.000 0.432 0.280 NA
#> SRR1643314     1  0.3419     0.7573 0.824 0.000 0.000 0.008 0.072 NA
#> SRR1643315     1  0.4041     0.7423 0.772 0.000 0.000 0.008 0.108 NA
#> SRR1643316     1  0.4168     0.7391 0.760 0.000 0.000 0.008 0.112 NA
#> SRR1643317     1  0.3528     0.7555 0.816 0.000 0.000 0.008 0.084 NA
#> SRR1643318     1  0.3472     0.7564 0.820 0.000 0.000 0.008 0.076 NA
#> SRR1643319     1  0.4084     0.7414 0.768 0.000 0.000 0.008 0.112 NA
#> SRR1643320     1  0.3952     0.7456 0.780 0.000 0.000 0.008 0.104 NA
#> SRR1643321     1  0.3768     0.7522 0.796 0.000 0.000 0.008 0.092 NA
#> SRR1643322     1  0.4039     0.7427 0.772 0.000 0.000 0.008 0.104 NA
#> SRR1643323     1  0.3816     0.7492 0.792 0.000 0.000 0.008 0.096 NA
#> SRR1643324     1  0.3860     0.7481 0.788 0.000 0.000 0.008 0.096 NA
#> SRR1643325     1  0.3576     0.7545 0.812 0.000 0.000 0.008 0.084 NA
#> SRR1643326     1  0.3477     0.7563 0.820 0.000 0.000 0.008 0.080 NA
#> SRR1643327     1  0.3860     0.7481 0.788 0.000 0.000 0.008 0.096 NA
#> SRR1643328     1  0.2740     0.7637 0.864 0.000 0.000 0.000 0.060 NA
#> SRR1643329     1  0.2910     0.7628 0.852 0.000 0.000 0.000 0.068 NA
#> SRR1643330     1  0.2910     0.7628 0.852 0.000 0.000 0.000 0.068 NA
#> SRR1643331     1  0.2852     0.7631 0.856 0.000 0.000 0.000 0.064 NA
#> SRR1643332     1  0.2685     0.7641 0.868 0.000 0.000 0.000 0.060 NA
#> SRR1643333     1  0.2905     0.7626 0.852 0.000 0.000 0.000 0.064 NA
#> SRR1643334     1  0.3261     0.7588 0.824 0.000 0.000 0.000 0.072 NA
#> SRR1643335     1  0.2962     0.7620 0.848 0.000 0.000 0.000 0.068 NA
#> SRR1643336     1  0.2685     0.7641 0.868 0.000 0.000 0.000 0.060 NA
#> SRR1643337     1  0.2799     0.7635 0.860 0.000 0.000 0.000 0.064 NA
#> SRR1643338     1  0.2852     0.7631 0.856 0.000 0.000 0.000 0.064 NA
#> SRR1643339     1  0.2852     0.7631 0.856 0.000 0.000 0.000 0.064 NA
#> SRR1643340     1  0.3172     0.7595 0.832 0.000 0.000 0.000 0.076 NA
#> SRR1643341     1  0.3068     0.7611 0.840 0.000 0.000 0.000 0.072 NA
#> SRR1643342     1  0.2856     0.7635 0.856 0.000 0.000 0.000 0.068 NA
#> SRR1643343     1  0.3979     0.6831 0.772 0.000 0.000 0.016 0.052 NA
#> SRR1643344     1  0.4038     0.6818 0.768 0.000 0.000 0.016 0.056 NA
#> SRR1643345     1  0.3979     0.6831 0.772 0.000 0.000 0.016 0.052 NA
#> SRR1643346     1  0.4038     0.6818 0.768 0.000 0.000 0.016 0.056 NA
#> SRR1643347     1  0.3918     0.6888 0.776 0.000 0.000 0.016 0.048 NA
#> SRR1643348     1  0.4038     0.6818 0.768 0.000 0.000 0.016 0.056 NA
#> SRR1643349     1  0.4038     0.6818 0.768 0.000 0.000 0.016 0.056 NA
#> SRR1643350     1  0.4003     0.6845 0.772 0.000 0.000 0.016 0.056 NA
#> SRR1643351     1  0.3979     0.6855 0.772 0.000 0.000 0.016 0.052 NA
#> SRR1643352     1  0.4038     0.6818 0.768 0.000 0.000 0.016 0.056 NA
#> SRR1643353     1  0.4003     0.6845 0.772 0.000 0.000 0.016 0.056 NA
#> SRR1643354     1  0.3979     0.6831 0.772 0.000 0.000 0.016 0.052 NA
#> SRR1643355     1  0.4152     0.6741 0.760 0.000 0.000 0.016 0.064 NA
#> SRR1643356     1  0.4038     0.6818 0.768 0.000 0.000 0.016 0.056 NA
#> SRR1643357     1  0.4096     0.6753 0.764 0.000 0.000 0.016 0.060 NA
#> SRR1643358     4  0.4315     0.6853 0.004 0.000 0.000 0.496 0.488 NA
#> SRR1643359     4  0.4493     0.6703 0.008 0.000 0.000 0.492 0.484 NA
#> SRR1643360     4  0.4493     0.6703 0.008 0.000 0.000 0.492 0.484 NA
#> SRR1643361     4  0.4493     0.6703 0.008 0.000 0.000 0.492 0.484 NA
#> SRR1643362     4  0.4315     0.6853 0.004 0.000 0.000 0.496 0.488 NA
#> SRR1643363     4  0.4493     0.6703 0.008 0.000 0.000 0.492 0.484 NA
#> SRR1643364     4  0.4412     0.6891 0.008 0.000 0.000 0.500 0.480 NA
#> SRR1643365     5  0.4493    -0.7281 0.008 0.000 0.000 0.484 0.492 NA
#> SRR1643366     4  0.4315     0.6806 0.004 0.000 0.000 0.492 0.492 NA
#> SRR1643367     5  0.4493    -0.7328 0.008 0.000 0.000 0.488 0.488 NA
#> SRR1643368     5  0.4493    -0.7328 0.008 0.000 0.000 0.488 0.488 NA
#> SRR1643369     4  0.4413     0.6779 0.008 0.000 0.000 0.492 0.488 NA
#> SRR1643370     4  0.4493     0.6703 0.008 0.000 0.000 0.492 0.484 NA
#> SRR1643371     4  0.4492     0.6754 0.008 0.000 0.000 0.496 0.480 NA
#> SRR1643372     4  0.4315     0.6853 0.004 0.000 0.000 0.496 0.488 NA
#> SRR1643373     4  0.4122     0.7187 0.004 0.000 0.000 0.520 0.472 NA
#> SRR1643374     4  0.3993     0.7167 0.004 0.000 0.000 0.520 0.476 NA
#> SRR1643375     4  0.4120     0.7187 0.004 0.000 0.000 0.524 0.468 NA
#> SRR1643376     4  0.3991     0.7174 0.004 0.000 0.000 0.524 0.472 NA
#> SRR1643377     4  0.4120     0.7187 0.004 0.000 0.000 0.524 0.468 NA
#> SRR1643378     4  0.4122     0.7187 0.004 0.000 0.000 0.520 0.472 NA
#> SRR1643379     4  0.4120     0.7187 0.004 0.000 0.000 0.524 0.468 NA
#> SRR1643380     4  0.4120     0.7187 0.004 0.000 0.000 0.524 0.468 NA
#> SRR1643381     4  0.4323     0.7117 0.008 0.000 0.000 0.508 0.476 NA
#> SRR1643382     4  0.4124     0.7157 0.004 0.000 0.000 0.516 0.476 NA
#> SRR1643383     4  0.4120     0.7187 0.004 0.000 0.000 0.524 0.468 NA
#> SRR1643384     4  0.3993     0.7167 0.004 0.000 0.000 0.520 0.476 NA
#> SRR1643385     4  0.4091     0.7168 0.008 0.000 0.000 0.520 0.472 NA
#> SRR1643386     4  0.4120     0.7187 0.004 0.000 0.000 0.524 0.468 NA
#> SRR1643387     4  0.3993     0.7167 0.004 0.000 0.000 0.520 0.476 NA
#> SRR1643388     4  0.4122     0.7187 0.004 0.000 0.000 0.520 0.472 NA
#> SRR1643389     4  0.3993     0.7167 0.004 0.000 0.000 0.520 0.476 NA
#> SRR1643390     1  0.0363     0.7638 0.988 0.000 0.000 0.000 0.000 NA
#> SRR1643391     1  0.0000     0.7654 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1643392     1  0.0146     0.7649 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1643393     1  0.0000     0.7654 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1643394     1  0.0000     0.7654 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1643395     1  0.0146     0.7649 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1643396     1  0.0146     0.7649 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1643397     1  0.0000     0.7654 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1643398     1  0.0291     0.7655 0.992 0.000 0.000 0.000 0.004 NA
#> SRR1643399     1  0.0146     0.7657 0.996 0.000 0.000 0.000 0.004 NA
#> SRR1643400     1  0.0146     0.7653 0.996 0.000 0.000 0.000 0.004 NA
#> SRR1643401     1  0.0000     0.7654 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1643402     1  0.0000     0.7654 1.000 0.000 0.000 0.000 0.000 NA
#> SRR1643403     1  0.0146     0.7649 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1643404     1  0.0146     0.7649 0.996 0.000 0.000 0.000 0.000 NA
#> SRR1643405     1  0.1866     0.7470 0.908 0.000 0.000 0.000 0.008 NA
#> SRR1643406     1  0.1967     0.7457 0.904 0.000 0.000 0.000 0.012 NA
#> SRR1643407     1  0.1866     0.7470 0.908 0.000 0.000 0.000 0.008 NA
#> SRR1643408     1  0.1967     0.7457 0.904 0.000 0.000 0.000 0.012 NA
#> SRR1643409     1  0.1866     0.7470 0.908 0.000 0.000 0.000 0.008 NA
#> SRR1643410     1  0.1918     0.7460 0.904 0.000 0.000 0.000 0.008 NA
#> SRR1643411     1  0.1866     0.7470 0.908 0.000 0.000 0.000 0.008 NA
#> SRR1643412     1  0.1967     0.7457 0.904 0.000 0.000 0.000 0.012 NA
#> SRR1643413     1  0.1866     0.7470 0.908 0.000 0.000 0.000 0.008 NA
#> SRR1643414     1  0.2019     0.7442 0.900 0.000 0.000 0.000 0.012 NA
#> SRR1643415     1  0.2070     0.7432 0.896 0.000 0.000 0.000 0.012 NA
#> SRR1643416     1  0.1866     0.7470 0.908 0.000 0.000 0.000 0.008 NA
#> SRR1643417     1  0.1967     0.7457 0.904 0.000 0.000 0.000 0.012 NA
#> SRR1643418     4  0.4057     0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643419     4  0.4057     0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643420     4  0.4057     0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643421     4  0.4184     0.7252 0.004 0.000 0.000 0.556 0.432 NA
#> SRR1643422     4  0.4057     0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643423     4  0.4057     0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643424     4  0.4057     0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643425     4  0.4057     0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643426     4  0.4057     0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643427     4  0.4057     0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643428     4  0.4057     0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643429     4  0.4057     0.7247 0.000 0.000 0.000 0.556 0.436 NA
#> SRR1643430     4  0.4051     0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643431     4  0.4051     0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643432     4  0.4051     0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643433     4  0.4051     0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643434     4  0.4045     0.7205 0.000 0.000 0.000 0.564 0.428 NA
#> SRR1643435     4  0.4051     0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643436     4  0.4051     0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643437     4  0.4051     0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643438     4  0.4051     0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643439     4  0.4051     0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643440     4  0.4051     0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643441     4  0.4051     0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643442     4  0.4051     0.7235 0.000 0.000 0.000 0.560 0.432 NA
#> SRR1643443     2  0.0405     0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643444     2  0.0405     0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643445     2  0.0405     0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643446     2  0.0405     0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643447     2  0.0405     0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643448     2  0.0291     0.7565 0.000 0.992 0.000 0.004 0.000 NA
#> SRR1643449     2  0.0405     0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643450     2  0.0405     0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643451     2  0.0405     0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643452     2  0.0405     0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643453     2  0.0405     0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643454     2  0.0405     0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643455     2  0.0405     0.7575 0.000 0.988 0.000 0.008 0.000 NA
#> SRR1643456     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643457     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643458     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643459     2  0.3817     0.8030 0.000 0.568 0.000 0.432 0.000 NA
#> SRR1643460     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643461     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643462     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643463     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643464     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643466     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643467     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643468     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643469     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643470     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643471     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643472     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643473     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643474     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643475     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643477     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643478     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643479     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643480     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643481     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643482     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643483     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643484     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643485     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643486     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643487     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643488     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643489     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643490     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643491     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643492     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643493     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643494     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643495     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643496     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643497     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643498     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643499     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643500     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643501     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643502     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643503     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643504     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643505     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643506     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643507     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643508     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643509     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643510     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643511     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643512     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643513     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643531     2  0.0405     0.7554 0.000 0.988 0.000 0.004 0.000 NA
#> SRR1643532     2  0.0405     0.7554 0.000 0.988 0.000 0.004 0.000 NA
#> SRR1643533     2  0.0260     0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643534     2  0.0260     0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643535     2  0.0260     0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643536     2  0.0260     0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643537     2  0.0260     0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643538     2  0.0260     0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643539     2  0.0260     0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643540     2  0.0260     0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643541     2  0.0405     0.7554 0.000 0.988 0.000 0.004 0.000 NA
#> SRR1643542     2  0.0260     0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643543     2  0.0260     0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643544     2  0.0260     0.7539 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643514     2  0.0363     0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643515     2  0.0260     0.7519 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643516     2  0.0363     0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643517     2  0.0260     0.7518 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643518     2  0.0363     0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643519     2  0.0363     0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643520     2  0.0363     0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643521     2  0.0363     0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643522     2  0.0653     0.7494 0.000 0.980 0.000 0.004 0.004 NA
#> SRR1643523     2  0.0363     0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643524     2  0.0363     0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643525     2  0.0363     0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643526     2  0.0363     0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643527     2  0.0363     0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643528     2  0.0363     0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643529     2  0.0363     0.7497 0.000 0.988 0.000 0.000 0.000 NA
#> SRR1643530     2  0.0260     0.7518 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643545     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643546     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643547     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643548     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643549     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643550     2  0.3817     0.8030 0.000 0.568 0.000 0.432 0.000 NA
#> SRR1643551     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643552     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643553     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643554     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643555     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643556     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643558     2  0.3823     0.8035 0.000 0.564 0.000 0.436 0.000 NA
#> SRR1643559     2  0.0000     0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643560     2  0.0000     0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643561     2  0.0000     0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643562     2  0.0000     0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643563     2  0.0000     0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643564     2  0.0000     0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643565     2  0.0000     0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643566     2  0.0000     0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643567     2  0.0000     0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643568     2  0.0000     0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643569     2  0.0000     0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643570     2  0.0000     0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643571     2  0.0000     0.7554 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643572     2  0.0000     0.7554 0.000 1.000 0.000 0.000 0.000 NA

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-SD-NMF-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-SD-NMF-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-SD-NMF-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-SD-NMF-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-SD-NMF-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-SD-NMF-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-SD-NMF-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-SD-NMF-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-SD-NMF-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-SD-NMF-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-SD-NMF-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-SD-NMF-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-SD-NMF-get-signatures-3

get_signatures(res, k = 5)

plot of chunk tab-SD-NMF-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-SD-NMF-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-SD-NMF-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-SD-NMF-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-SD-NMF-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)

plot of chunk tab-SD-NMF-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-SD-NMF-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk SD-NMF-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-SD-NMF-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-SD-NMF-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-SD-NMF-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-SD-NMF-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-SD-NMF-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk SD-NMF-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


CV:hclust**

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["CV", "hclust"]
# you can also extract it by
# res = res_list["CV:hclust"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'CV' method.
#>   Subgroups are detected by 'hclust' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 3.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk CV-hclust-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk CV-hclust-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000         0.4350 0.566   0.566
#> 3 3 1.000           0.998       0.998         0.2916 0.874   0.777
#> 4 4 0.782           0.905       0.922         0.1613 0.877   0.720
#> 5 5 0.819           0.870       0.934         0.0531 0.998   0.995
#> 6 6 0.775           0.774       0.863         0.0667 0.948   0.835

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 3
#> attr(,"optional")
#> [1] 2

There is also optional best \(k\) = 2 that is worth to check.

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1 p2    p3
#> SRR1643167     1  0.0424      0.995 0.992  0 0.008
#> SRR1643168     1  0.0424      0.995 0.992  0 0.008
#> SRR1643169     1  0.0424      0.995 0.992  0 0.008
#> SRR1643170     1  0.0424      0.995 0.992  0 0.008
#> SRR1643171     1  0.0424      0.995 0.992  0 0.008
#> SRR1643172     1  0.0424      0.995 0.992  0 0.008
#> SRR1643173     1  0.0424      0.995 0.992  0 0.008
#> SRR1643174     1  0.0424      0.995 0.992  0 0.008
#> SRR1643175     1  0.0424      0.995 0.992  0 0.008
#> SRR1643176     1  0.0424      0.995 0.992  0 0.008
#> SRR1643177     1  0.0424      0.995 0.992  0 0.008
#> SRR1643178     1  0.0424      0.995 0.992  0 0.008
#> SRR1643180     1  0.0424      0.995 0.992  0 0.008
#> SRR1643181     1  0.0424      0.995 0.992  0 0.008
#> SRR1643182     1  0.0424      0.995 0.992  0 0.008
#> SRR1643183     1  0.0424      0.995 0.992  0 0.008
#> SRR1643184     1  0.0424      0.995 0.992  0 0.008
#> SRR1643185     1  0.0424      0.995 0.992  0 0.008
#> SRR1643186     1  0.0424      0.995 0.992  0 0.008
#> SRR1643187     1  0.0000      0.997 1.000  0 0.000
#> SRR1643188     1  0.0000      0.997 1.000  0 0.000
#> SRR1643189     1  0.0000      0.997 1.000  0 0.000
#> SRR1643190     1  0.0000      0.997 1.000  0 0.000
#> SRR1643191     1  0.0424      0.995 0.992  0 0.008
#> SRR1643192     1  0.0424      0.995 0.992  0 0.008
#> SRR1643193     1  0.0424      0.995 0.992  0 0.008
#> SRR1643194     1  0.0424      0.995 0.992  0 0.008
#> SRR1643195     1  0.0000      0.997 1.000  0 0.000
#> SRR1643196     1  0.0000      0.997 1.000  0 0.000
#> SRR1643197     1  0.0424      0.995 0.992  0 0.008
#> SRR1643198     1  0.0424      0.995 0.992  0 0.008
#> SRR1643199     1  0.0424      0.995 0.992  0 0.008
#> SRR1643200     1  0.0424      0.995 0.992  0 0.008
#> SRR1643201     1  0.0000      0.997 1.000  0 0.000
#> SRR1643202     1  0.0000      0.997 1.000  0 0.000
#> SRR1643203     1  0.0000      0.997 1.000  0 0.000
#> SRR1643204     1  0.0000      0.997 1.000  0 0.000
#> SRR1643205     3  0.0000      0.999 0.000  0 1.000
#> SRR1643206     3  0.0000      0.999 0.000  0 1.000
#> SRR1643207     3  0.0000      0.999 0.000  0 1.000
#> SRR1643208     3  0.0000      0.999 0.000  0 1.000
#> SRR1643209     3  0.0000      0.999 0.000  0 1.000
#> SRR1643210     3  0.0000      0.999 0.000  0 1.000
#> SRR1643211     3  0.0000      0.999 0.000  0 1.000
#> SRR1643212     3  0.0000      0.999 0.000  0 1.000
#> SRR1643213     3  0.0000      0.999 0.000  0 1.000
#> SRR1643214     3  0.0000      0.999 0.000  0 1.000
#> SRR1643215     3  0.0000      0.999 0.000  0 1.000
#> SRR1643216     3  0.0000      0.999 0.000  0 1.000
#> SRR1643217     3  0.0000      0.999 0.000  0 1.000
#> SRR1643218     3  0.0000      0.999 0.000  0 1.000
#> SRR1643219     3  0.0000      0.999 0.000  0 1.000
#> SRR1643220     3  0.0000      0.999 0.000  0 1.000
#> SRR1643221     3  0.0000      0.999 0.000  0 1.000
#> SRR1643222     3  0.0000      0.999 0.000  0 1.000
#> SRR1643223     3  0.0000      0.999 0.000  0 1.000
#> SRR1643224     3  0.0000      0.999 0.000  0 1.000
#> SRR1643225     3  0.0000      0.999 0.000  0 1.000
#> SRR1643226     3  0.0000      0.999 0.000  0 1.000
#> SRR1643227     3  0.0000      0.999 0.000  0 1.000
#> SRR1643228     3  0.0000      0.999 0.000  0 1.000
#> SRR1643229     3  0.0000      0.999 0.000  0 1.000
#> SRR1643230     3  0.0000      0.999 0.000  0 1.000
#> SRR1643231     3  0.0000      0.999 0.000  0 1.000
#> SRR1643232     3  0.0000      0.999 0.000  0 1.000
#> SRR1643233     3  0.0000      0.999 0.000  0 1.000
#> SRR1643234     3  0.0000      0.999 0.000  0 1.000
#> SRR1643235     3  0.0000      0.999 0.000  0 1.000
#> SRR1643236     3  0.0000      0.999 0.000  0 1.000
#> SRR1643237     3  0.0000      0.999 0.000  0 1.000
#> SRR1643238     3  0.0000      0.999 0.000  0 1.000
#> SRR1643239     3  0.0000      0.999 0.000  0 1.000
#> SRR1643240     3  0.0000      0.999 0.000  0 1.000
#> SRR1643241     3  0.0000      0.999 0.000  0 1.000
#> SRR1643242     3  0.0000      0.999 0.000  0 1.000
#> SRR1643243     3  0.0000      0.999 0.000  0 1.000
#> SRR1643245     3  0.0000      0.999 0.000  0 1.000
#> SRR1643246     3  0.0000      0.999 0.000  0 1.000
#> SRR1643247     3  0.0000      0.999 0.000  0 1.000
#> SRR1643248     3  0.0000      0.999 0.000  0 1.000
#> SRR1643249     3  0.0892      0.975 0.020  0 0.980
#> SRR1643250     1  0.0000      0.997 1.000  0 0.000
#> SRR1643251     1  0.0000      0.997 1.000  0 0.000
#> SRR1643252     1  0.0000      0.997 1.000  0 0.000
#> SRR1643253     1  0.0000      0.997 1.000  0 0.000
#> SRR1643254     1  0.0000      0.997 1.000  0 0.000
#> SRR1643255     1  0.0000      0.997 1.000  0 0.000
#> SRR1643256     1  0.0000      0.997 1.000  0 0.000
#> SRR1643257     1  0.0000      0.997 1.000  0 0.000
#> SRR1643258     1  0.0000      0.997 1.000  0 0.000
#> SRR1643259     1  0.0000      0.997 1.000  0 0.000
#> SRR1643260     1  0.0000      0.997 1.000  0 0.000
#> SRR1643261     1  0.0000      0.997 1.000  0 0.000
#> SRR1643262     1  0.0000      0.997 1.000  0 0.000
#> SRR1643263     1  0.0000      0.997 1.000  0 0.000
#> SRR1643264     1  0.0000      0.997 1.000  0 0.000
#> SRR1643266     1  0.0000      0.997 1.000  0 0.000
#> SRR1643267     1  0.0000      0.997 1.000  0 0.000
#> SRR1643268     1  0.0000      0.997 1.000  0 0.000
#> SRR1643269     1  0.0000      0.997 1.000  0 0.000
#> SRR1643270     1  0.0000      0.997 1.000  0 0.000
#> SRR1643271     1  0.0000      0.997 1.000  0 0.000
#> SRR1643272     1  0.0000      0.997 1.000  0 0.000
#> SRR1643273     1  0.0000      0.997 1.000  0 0.000
#> SRR1643274     1  0.0000      0.997 1.000  0 0.000
#> SRR1643275     1  0.0000      0.997 1.000  0 0.000
#> SRR1643276     1  0.0000      0.997 1.000  0 0.000
#> SRR1643277     1  0.0000      0.997 1.000  0 0.000
#> SRR1643278     1  0.0000      0.997 1.000  0 0.000
#> SRR1643279     1  0.0000      0.997 1.000  0 0.000
#> SRR1643280     1  0.0000      0.997 1.000  0 0.000
#> SRR1643281     1  0.0000      0.997 1.000  0 0.000
#> SRR1643282     1  0.0000      0.997 1.000  0 0.000
#> SRR1643283     1  0.0000      0.997 1.000  0 0.000
#> SRR1643284     1  0.0000      0.997 1.000  0 0.000
#> SRR1643285     1  0.0000      0.997 1.000  0 0.000
#> SRR1643286     1  0.0000      0.997 1.000  0 0.000
#> SRR1643287     1  0.0000      0.997 1.000  0 0.000
#> SRR1643288     1  0.0000      0.997 1.000  0 0.000
#> SRR1643289     1  0.0000      0.997 1.000  0 0.000
#> SRR1643290     1  0.0000      0.997 1.000  0 0.000
#> SRR1643291     1  0.0000      0.997 1.000  0 0.000
#> SRR1643292     1  0.0000      0.997 1.000  0 0.000
#> SRR1643293     1  0.0000      0.997 1.000  0 0.000
#> SRR1643294     1  0.0000      0.997 1.000  0 0.000
#> SRR1643295     1  0.0000      0.997 1.000  0 0.000
#> SRR1643296     1  0.0000      0.997 1.000  0 0.000
#> SRR1643297     1  0.0000      0.997 1.000  0 0.000
#> SRR1643298     1  0.0000      0.997 1.000  0 0.000
#> SRR1643299     1  0.0000      0.997 1.000  0 0.000
#> SRR1643300     1  0.0000      0.997 1.000  0 0.000
#> SRR1643301     1  0.0000      0.997 1.000  0 0.000
#> SRR1643302     1  0.0000      0.997 1.000  0 0.000
#> SRR1643303     1  0.0000      0.997 1.000  0 0.000
#> SRR1643304     1  0.0000      0.997 1.000  0 0.000
#> SRR1643305     1  0.0000      0.997 1.000  0 0.000
#> SRR1643306     1  0.0000      0.997 1.000  0 0.000
#> SRR1643307     1  0.0000      0.997 1.000  0 0.000
#> SRR1643308     1  0.0000      0.997 1.000  0 0.000
#> SRR1643309     1  0.0000      0.997 1.000  0 0.000
#> SRR1643310     1  0.0000      0.997 1.000  0 0.000
#> SRR1643311     1  0.0000      0.997 1.000  0 0.000
#> SRR1643312     1  0.0000      0.997 1.000  0 0.000
#> SRR1643313     1  0.0000      0.997 1.000  0 0.000
#> SRR1643314     1  0.0000      0.997 1.000  0 0.000
#> SRR1643315     1  0.0000      0.997 1.000  0 0.000
#> SRR1643316     1  0.0000      0.997 1.000  0 0.000
#> SRR1643317     1  0.0000      0.997 1.000  0 0.000
#> SRR1643318     1  0.0000      0.997 1.000  0 0.000
#> SRR1643319     1  0.0000      0.997 1.000  0 0.000
#> SRR1643320     1  0.0000      0.997 1.000  0 0.000
#> SRR1643321     1  0.0000      0.997 1.000  0 0.000
#> SRR1643322     1  0.0000      0.997 1.000  0 0.000
#> SRR1643323     1  0.0000      0.997 1.000  0 0.000
#> SRR1643324     1  0.0000      0.997 1.000  0 0.000
#> SRR1643325     1  0.0000      0.997 1.000  0 0.000
#> SRR1643326     1  0.0000      0.997 1.000  0 0.000
#> SRR1643327     1  0.0000      0.997 1.000  0 0.000
#> SRR1643328     1  0.0424      0.995 0.992  0 0.008
#> SRR1643329     1  0.0424      0.995 0.992  0 0.008
#> SRR1643330     1  0.0424      0.995 0.992  0 0.008
#> SRR1643331     1  0.0424      0.995 0.992  0 0.008
#> SRR1643332     1  0.0424      0.995 0.992  0 0.008
#> SRR1643333     1  0.0424      0.995 0.992  0 0.008
#> SRR1643334     1  0.0424      0.995 0.992  0 0.008
#> SRR1643335     1  0.0424      0.995 0.992  0 0.008
#> SRR1643336     1  0.0424      0.995 0.992  0 0.008
#> SRR1643337     1  0.0424      0.995 0.992  0 0.008
#> SRR1643338     1  0.0424      0.995 0.992  0 0.008
#> SRR1643339     1  0.0424      0.995 0.992  0 0.008
#> SRR1643340     1  0.0424      0.995 0.992  0 0.008
#> SRR1643341     1  0.0424      0.995 0.992  0 0.008
#> SRR1643342     1  0.0424      0.995 0.992  0 0.008
#> SRR1643343     1  0.0424      0.995 0.992  0 0.008
#> SRR1643344     1  0.0424      0.995 0.992  0 0.008
#> SRR1643345     1  0.0424      0.995 0.992  0 0.008
#> SRR1643346     1  0.0424      0.995 0.992  0 0.008
#> SRR1643347     1  0.0424      0.995 0.992  0 0.008
#> SRR1643348     1  0.0424      0.995 0.992  0 0.008
#> SRR1643349     1  0.0424      0.995 0.992  0 0.008
#> SRR1643350     1  0.0424      0.995 0.992  0 0.008
#> SRR1643351     1  0.0424      0.995 0.992  0 0.008
#> SRR1643352     1  0.0424      0.995 0.992  0 0.008
#> SRR1643353     1  0.0424      0.995 0.992  0 0.008
#> SRR1643354     1  0.0424      0.995 0.992  0 0.008
#> SRR1643355     1  0.0424      0.995 0.992  0 0.008
#> SRR1643356     1  0.0424      0.995 0.992  0 0.008
#> SRR1643357     1  0.0424      0.995 0.992  0 0.008
#> SRR1643358     1  0.0000      0.997 1.000  0 0.000
#> SRR1643359     1  0.0000      0.997 1.000  0 0.000
#> SRR1643360     1  0.0000      0.997 1.000  0 0.000
#> SRR1643361     1  0.0000      0.997 1.000  0 0.000
#> SRR1643362     1  0.0000      0.997 1.000  0 0.000
#> SRR1643363     1  0.0000      0.997 1.000  0 0.000
#> SRR1643364     1  0.0000      0.997 1.000  0 0.000
#> SRR1643365     1  0.0000      0.997 1.000  0 0.000
#> SRR1643366     1  0.0000      0.997 1.000  0 0.000
#> SRR1643367     1  0.0000      0.997 1.000  0 0.000
#> SRR1643368     1  0.0000      0.997 1.000  0 0.000
#> SRR1643369     1  0.0000      0.997 1.000  0 0.000
#> SRR1643370     1  0.0000      0.997 1.000  0 0.000
#> SRR1643371     1  0.0000      0.997 1.000  0 0.000
#> SRR1643372     1  0.0000      0.997 1.000  0 0.000
#> SRR1643373     1  0.0000      0.997 1.000  0 0.000
#> SRR1643374     1  0.0000      0.997 1.000  0 0.000
#> SRR1643375     1  0.0000      0.997 1.000  0 0.000
#> SRR1643376     1  0.0000      0.997 1.000  0 0.000
#> SRR1643377     1  0.0000      0.997 1.000  0 0.000
#> SRR1643378     1  0.0000      0.997 1.000  0 0.000
#> SRR1643379     1  0.0000      0.997 1.000  0 0.000
#> SRR1643380     1  0.0000      0.997 1.000  0 0.000
#> SRR1643381     1  0.0000      0.997 1.000  0 0.000
#> SRR1643382     1  0.0000      0.997 1.000  0 0.000
#> SRR1643383     1  0.0000      0.997 1.000  0 0.000
#> SRR1643384     1  0.0000      0.997 1.000  0 0.000
#> SRR1643385     1  0.0000      0.997 1.000  0 0.000
#> SRR1643386     1  0.0000      0.997 1.000  0 0.000
#> SRR1643387     1  0.0000      0.997 1.000  0 0.000
#> SRR1643388     1  0.0000      0.997 1.000  0 0.000
#> SRR1643389     1  0.0000      0.997 1.000  0 0.000
#> SRR1643390     1  0.0424      0.995 0.992  0 0.008
#> SRR1643391     1  0.0424      0.995 0.992  0 0.008
#> SRR1643392     1  0.0424      0.995 0.992  0 0.008
#> SRR1643393     1  0.0424      0.995 0.992  0 0.008
#> SRR1643394     1  0.0424      0.995 0.992  0 0.008
#> SRR1643395     1  0.0424      0.995 0.992  0 0.008
#> SRR1643396     1  0.0424      0.995 0.992  0 0.008
#> SRR1643397     1  0.0424      0.995 0.992  0 0.008
#> SRR1643398     1  0.0424      0.995 0.992  0 0.008
#> SRR1643399     1  0.0424      0.995 0.992  0 0.008
#> SRR1643400     1  0.0424      0.995 0.992  0 0.008
#> SRR1643401     1  0.0424      0.995 0.992  0 0.008
#> SRR1643402     1  0.0424      0.995 0.992  0 0.008
#> SRR1643403     1  0.0424      0.995 0.992  0 0.008
#> SRR1643404     1  0.0424      0.995 0.992  0 0.008
#> SRR1643405     1  0.0424      0.995 0.992  0 0.008
#> SRR1643406     1  0.0424      0.995 0.992  0 0.008
#> SRR1643407     1  0.0424      0.995 0.992  0 0.008
#> SRR1643408     1  0.0424      0.995 0.992  0 0.008
#> SRR1643409     1  0.0424      0.995 0.992  0 0.008
#> SRR1643410     1  0.0424      0.995 0.992  0 0.008
#> SRR1643411     1  0.0424      0.995 0.992  0 0.008
#> SRR1643412     1  0.0424      0.995 0.992  0 0.008
#> SRR1643413     1  0.0424      0.995 0.992  0 0.008
#> SRR1643414     1  0.0424      0.995 0.992  0 0.008
#> SRR1643415     1  0.0424      0.995 0.992  0 0.008
#> SRR1643416     1  0.0424      0.995 0.992  0 0.008
#> SRR1643417     1  0.0424      0.995 0.992  0 0.008
#> SRR1643418     1  0.0000      0.997 1.000  0 0.000
#> SRR1643419     1  0.0000      0.997 1.000  0 0.000
#> SRR1643420     1  0.0000      0.997 1.000  0 0.000
#> SRR1643421     1  0.0000      0.997 1.000  0 0.000
#> SRR1643422     1  0.0000      0.997 1.000  0 0.000
#> SRR1643423     1  0.0000      0.997 1.000  0 0.000
#> SRR1643424     1  0.0000      0.997 1.000  0 0.000
#> SRR1643425     1  0.0000      0.997 1.000  0 0.000
#> SRR1643426     1  0.0000      0.997 1.000  0 0.000
#> SRR1643427     1  0.0000      0.997 1.000  0 0.000
#> SRR1643428     1  0.0000      0.997 1.000  0 0.000
#> SRR1643429     1  0.0000      0.997 1.000  0 0.000
#> SRR1643430     1  0.0000      0.997 1.000  0 0.000
#> SRR1643431     1  0.0000      0.997 1.000  0 0.000
#> SRR1643432     1  0.0000      0.997 1.000  0 0.000
#> SRR1643433     1  0.0000      0.997 1.000  0 0.000
#> SRR1643434     1  0.0000      0.997 1.000  0 0.000
#> SRR1643435     1  0.0000      0.997 1.000  0 0.000
#> SRR1643436     1  0.0000      0.997 1.000  0 0.000
#> SRR1643437     1  0.0000      0.997 1.000  0 0.000
#> SRR1643438     1  0.0000      0.997 1.000  0 0.000
#> SRR1643439     1  0.0000      0.997 1.000  0 0.000
#> SRR1643440     1  0.0000      0.997 1.000  0 0.000
#> SRR1643441     1  0.0000      0.997 1.000  0 0.000
#> SRR1643442     1  0.0000      0.997 1.000  0 0.000
#> SRR1643443     2  0.0000      1.000 0.000  1 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1 0.000
#> SRR1643505     2  0.0000      1.000 0.000  1 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1 0.000

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1    p2    p3    p4
#> SRR1643167     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643168     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643169     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643170     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643171     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643172     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643173     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643174     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643175     1  0.0672      0.903 0.984 0.000 0.008 0.008
#> SRR1643176     1  0.0672      0.903 0.984 0.000 0.008 0.008
#> SRR1643177     1  0.0672      0.903 0.984 0.000 0.008 0.008
#> SRR1643178     1  0.0672      0.903 0.984 0.000 0.008 0.008
#> SRR1643180     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643181     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643182     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643183     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643184     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643185     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643186     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643187     1  0.0336      0.902 0.992 0.000 0.000 0.008
#> SRR1643188     1  0.0336      0.902 0.992 0.000 0.000 0.008
#> SRR1643189     1  0.0336      0.902 0.992 0.000 0.000 0.008
#> SRR1643190     1  0.0336      0.902 0.992 0.000 0.000 0.008
#> SRR1643191     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643192     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643193     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643194     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643195     1  0.0817      0.896 0.976 0.000 0.000 0.024
#> SRR1643196     1  0.0817      0.896 0.976 0.000 0.000 0.024
#> SRR1643197     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643198     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643199     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643200     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643201     1  0.0000      0.902 1.000 0.000 0.000 0.000
#> SRR1643202     1  0.0000      0.902 1.000 0.000 0.000 0.000
#> SRR1643203     1  0.0336      0.902 0.992 0.000 0.000 0.008
#> SRR1643204     1  0.0336      0.902 0.992 0.000 0.000 0.008
#> SRR1643205     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643206     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643207     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643208     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643209     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643210     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643211     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643212     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643213     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643214     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643215     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643216     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643217     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643218     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643219     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643220     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643221     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643222     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643223     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643224     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643225     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643226     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643227     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643228     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643229     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643230     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643231     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643232     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643233     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643234     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643235     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643236     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643237     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643238     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643239     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643240     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643241     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643242     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643243     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643245     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643246     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643247     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643248     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643249     3  0.0707      0.973 0.020 0.000 0.980 0.000
#> SRR1643250     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643251     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643252     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643253     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643254     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643255     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643256     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643257     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643258     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643259     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643260     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643261     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643262     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643263     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643264     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643266     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643267     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643268     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643269     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643270     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643271     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643272     1  0.2973      0.790 0.856 0.000 0.000 0.144
#> SRR1643273     1  0.2814      0.804 0.868 0.000 0.000 0.132
#> SRR1643274     1  0.2814      0.804 0.868 0.000 0.000 0.132
#> SRR1643275     1  0.2814      0.804 0.868 0.000 0.000 0.132
#> SRR1643276     1  0.2814      0.804 0.868 0.000 0.000 0.132
#> SRR1643277     1  0.2814      0.804 0.868 0.000 0.000 0.132
#> SRR1643278     1  0.2814      0.804 0.868 0.000 0.000 0.132
#> SRR1643279     1  0.2814      0.804 0.868 0.000 0.000 0.132
#> SRR1643280     1  0.2814      0.804 0.868 0.000 0.000 0.132
#> SRR1643281     1  0.2814      0.804 0.868 0.000 0.000 0.132
#> SRR1643282     1  0.2814      0.804 0.868 0.000 0.000 0.132
#> SRR1643283     1  0.2814      0.804 0.868 0.000 0.000 0.132
#> SRR1643284     1  0.2814      0.804 0.868 0.000 0.000 0.132
#> SRR1643285     1  0.2814      0.804 0.868 0.000 0.000 0.132
#> SRR1643286     1  0.2814      0.804 0.868 0.000 0.000 0.132
#> SRR1643287     1  0.3726      0.656 0.788 0.000 0.000 0.212
#> SRR1643288     1  0.3726      0.656 0.788 0.000 0.000 0.212
#> SRR1643289     1  0.3726      0.656 0.788 0.000 0.000 0.212
#> SRR1643290     1  0.3726      0.656 0.788 0.000 0.000 0.212
#> SRR1643291     1  0.3726      0.656 0.788 0.000 0.000 0.212
#> SRR1643292     1  0.3726      0.656 0.788 0.000 0.000 0.212
#> SRR1643293     1  0.3726      0.656 0.788 0.000 0.000 0.212
#> SRR1643294     1  0.3726      0.656 0.788 0.000 0.000 0.212
#> SRR1643295     1  0.3726      0.656 0.788 0.000 0.000 0.212
#> SRR1643296     1  0.3726      0.656 0.788 0.000 0.000 0.212
#> SRR1643297     1  0.3726      0.656 0.788 0.000 0.000 0.212
#> SRR1643298     1  0.3726      0.656 0.788 0.000 0.000 0.212
#> SRR1643299     1  0.3726      0.656 0.788 0.000 0.000 0.212
#> SRR1643300     1  0.3726      0.656 0.788 0.000 0.000 0.212
#> SRR1643301     1  0.0707      0.897 0.980 0.000 0.000 0.020
#> SRR1643302     1  0.0707      0.897 0.980 0.000 0.000 0.020
#> SRR1643303     1  0.0707      0.897 0.980 0.000 0.000 0.020
#> SRR1643304     1  0.0707      0.897 0.980 0.000 0.000 0.020
#> SRR1643305     1  0.0707      0.897 0.980 0.000 0.000 0.020
#> SRR1643306     1  0.0707      0.897 0.980 0.000 0.000 0.020
#> SRR1643307     1  0.0707      0.897 0.980 0.000 0.000 0.020
#> SRR1643308     1  0.0707      0.897 0.980 0.000 0.000 0.020
#> SRR1643309     1  0.0707      0.897 0.980 0.000 0.000 0.020
#> SRR1643310     1  0.0707      0.897 0.980 0.000 0.000 0.020
#> SRR1643311     1  0.0707      0.897 0.980 0.000 0.000 0.020
#> SRR1643312     1  0.0707      0.897 0.980 0.000 0.000 0.020
#> SRR1643313     1  0.0707      0.897 0.980 0.000 0.000 0.020
#> SRR1643314     1  0.0188      0.903 0.996 0.000 0.000 0.004
#> SRR1643315     1  0.0188      0.903 0.996 0.000 0.000 0.004
#> SRR1643316     1  0.0188      0.903 0.996 0.000 0.000 0.004
#> SRR1643317     1  0.0188      0.903 0.996 0.000 0.000 0.004
#> SRR1643318     1  0.0188      0.903 0.996 0.000 0.000 0.004
#> SRR1643319     1  0.0000      0.902 1.000 0.000 0.000 0.000
#> SRR1643320     1  0.0188      0.903 0.996 0.000 0.000 0.004
#> SRR1643321     1  0.0188      0.903 0.996 0.000 0.000 0.004
#> SRR1643322     1  0.0188      0.903 0.996 0.000 0.000 0.004
#> SRR1643323     1  0.0188      0.903 0.996 0.000 0.000 0.004
#> SRR1643324     1  0.0188      0.903 0.996 0.000 0.000 0.004
#> SRR1643325     1  0.0188      0.903 0.996 0.000 0.000 0.004
#> SRR1643326     1  0.0188      0.903 0.996 0.000 0.000 0.004
#> SRR1643327     1  0.0188      0.903 0.996 0.000 0.000 0.004
#> SRR1643328     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643329     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643330     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643331     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643332     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643333     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643334     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643335     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643336     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643337     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643338     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643339     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643340     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643341     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643342     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643343     1  0.2675      0.846 0.892 0.000 0.008 0.100
#> SRR1643344     1  0.2675      0.846 0.892 0.000 0.008 0.100
#> SRR1643345     1  0.2675      0.846 0.892 0.000 0.008 0.100
#> SRR1643346     1  0.2675      0.846 0.892 0.000 0.008 0.100
#> SRR1643347     1  0.2675      0.846 0.892 0.000 0.008 0.100
#> SRR1643348     1  0.2675      0.846 0.892 0.000 0.008 0.100
#> SRR1643349     1  0.2675      0.846 0.892 0.000 0.008 0.100
#> SRR1643350     1  0.2675      0.846 0.892 0.000 0.008 0.100
#> SRR1643351     1  0.2675      0.846 0.892 0.000 0.008 0.100
#> SRR1643352     1  0.2675      0.846 0.892 0.000 0.008 0.100
#> SRR1643353     1  0.2675      0.846 0.892 0.000 0.008 0.100
#> SRR1643354     1  0.2675      0.846 0.892 0.000 0.008 0.100
#> SRR1643355     1  0.2675      0.846 0.892 0.000 0.008 0.100
#> SRR1643356     1  0.2675      0.846 0.892 0.000 0.008 0.100
#> SRR1643357     1  0.2675      0.846 0.892 0.000 0.008 0.100
#> SRR1643358     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643359     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643360     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643361     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643362     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643363     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643364     4  0.4730      0.781 0.364 0.000 0.000 0.636
#> SRR1643365     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643366     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643367     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643368     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643369     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643370     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643371     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643372     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643373     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643374     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643375     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643376     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643377     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643378     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643379     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643380     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643381     4  0.4008      0.798 0.244 0.000 0.000 0.756
#> SRR1643382     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643383     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643384     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643385     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643386     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643387     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643388     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643389     4  0.4977      0.758 0.460 0.000 0.000 0.540
#> SRR1643390     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643391     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643392     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643393     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643394     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643395     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643396     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643397     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643398     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643399     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643400     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643401     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643402     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643403     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643404     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643405     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643406     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643407     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643408     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643409     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643410     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643411     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643412     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643413     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643414     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643415     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643416     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643417     1  0.0336      0.903 0.992 0.000 0.008 0.000
#> SRR1643418     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643419     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643420     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643421     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643422     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643423     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643424     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643425     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643426     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643427     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643428     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643429     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643430     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643431     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643432     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643433     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643434     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643435     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643436     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643437     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643438     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643439     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643440     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643441     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643442     4  0.3907      0.799 0.232 0.000 0.000 0.768
#> SRR1643443     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643444     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643445     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643446     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643447     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643448     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643449     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643450     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643451     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643452     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643453     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643454     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643455     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643456     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643457     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643458     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643459     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643460     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643461     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643462     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643463     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643464     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643466     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643467     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643468     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643469     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643470     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643471     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643472     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643473     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643474     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643475     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643477     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643478     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643479     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643480     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643481     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643482     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643483     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643484     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643485     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643486     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643487     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643488     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643489     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643490     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643491     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643492     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643493     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643494     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643495     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643496     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643497     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643498     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643499     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643500     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643501     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643502     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643503     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643504     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643505     2  0.3907      0.761 0.000 0.768 0.000 0.232
#> SRR1643506     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643507     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643508     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643509     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643510     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643511     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643512     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643513     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643531     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643532     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643533     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643534     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643535     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643536     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643537     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643538     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643539     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643540     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643541     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643542     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643543     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643544     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643514     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643515     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643516     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643517     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643518     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643519     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643520     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643521     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643522     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643523     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643524     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643525     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643526     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643527     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643528     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643529     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643530     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643545     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643546     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643547     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643548     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643549     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643550     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643551     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643552     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643553     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643554     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643555     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643556     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643558     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643559     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643560     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643561     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643562     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643563     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643564     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643565     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643566     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643567     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643568     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643569     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643570     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643571     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643572     2  0.0000      0.998 0.000 1.000 0.000 0.000

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1    p2   p3    p4    p5
#> SRR1643167     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643168     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643169     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643170     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643171     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643172     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643173     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643174     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643175     1  0.0290      0.868 0.992 0.000 0.00 0.008 0.000
#> SRR1643176     1  0.0290      0.868 0.992 0.000 0.00 0.008 0.000
#> SRR1643177     1  0.0290      0.868 0.992 0.000 0.00 0.008 0.000
#> SRR1643178     1  0.0290      0.868 0.992 0.000 0.00 0.008 0.000
#> SRR1643180     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643181     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643182     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643183     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643184     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643185     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643186     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643187     1  0.0963      0.868 0.964 0.000 0.00 0.036 0.000
#> SRR1643188     1  0.0963      0.868 0.964 0.000 0.00 0.036 0.000
#> SRR1643189     1  0.0963      0.868 0.964 0.000 0.00 0.036 0.000
#> SRR1643190     1  0.0963      0.868 0.964 0.000 0.00 0.036 0.000
#> SRR1643191     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643192     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643193     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643194     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643195     1  0.1478      0.859 0.936 0.000 0.00 0.064 0.000
#> SRR1643196     1  0.1478      0.859 0.936 0.000 0.00 0.064 0.000
#> SRR1643197     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643198     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643199     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643200     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643201     1  0.0880      0.867 0.968 0.000 0.00 0.032 0.000
#> SRR1643202     1  0.0880      0.867 0.968 0.000 0.00 0.032 0.000
#> SRR1643203     1  0.0963      0.868 0.964 0.000 0.00 0.036 0.000
#> SRR1643204     1  0.0963      0.868 0.964 0.000 0.00 0.036 0.000
#> SRR1643205     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643206     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643207     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643208     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643209     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643210     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643211     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643212     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643213     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643214     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643215     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643216     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643217     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643218     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643219     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643220     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643221     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643222     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643223     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643224     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643225     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643226     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643227     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643228     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643229     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643230     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643231     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643232     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643233     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643234     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643235     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643236     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643237     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643238     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643239     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643240     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643241     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643242     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643243     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643245     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643246     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643247     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643248     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643249     3  0.0609      0.960 0.020 0.000 0.98 0.000 0.000
#> SRR1643250     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643251     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643252     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643253     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643254     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643255     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643256     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643257     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643258     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643259     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643260     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643261     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643262     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643263     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643264     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643266     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643267     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643268     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643269     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643270     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643271     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643272     1  0.3336      0.735 0.772 0.000 0.00 0.228 0.000
#> SRR1643273     1  0.3876      0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643274     1  0.3876      0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643275     1  0.3876      0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643276     1  0.3876      0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643277     1  0.3876      0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643278     1  0.3876      0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643279     1  0.3876      0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643280     1  0.3876      0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643281     1  0.3876      0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643282     1  0.3876      0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643283     1  0.3876      0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643284     1  0.3876      0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643285     1  0.3876      0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643286     1  0.3876      0.586 0.684 0.000 0.00 0.316 0.000
#> SRR1643287     1  0.4201      0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643288     1  0.4201      0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643289     1  0.4201      0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643290     1  0.4201      0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643291     1  0.4201      0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643292     1  0.4201      0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643293     1  0.4201      0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643294     1  0.4201      0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643295     1  0.4201      0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643296     1  0.4201      0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643297     1  0.4201      0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643298     1  0.4201      0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643299     1  0.4201      0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643300     1  0.4201      0.389 0.592 0.000 0.00 0.408 0.000
#> SRR1643301     1  0.1410      0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643302     1  0.1410      0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643303     1  0.1410      0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643304     1  0.1410      0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643305     1  0.1410      0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643306     1  0.1410      0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643307     1  0.1410      0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643308     1  0.1410      0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643309     1  0.1410      0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643310     1  0.1410      0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643311     1  0.1410      0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643312     1  0.1410      0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643313     1  0.1410      0.859 0.940 0.000 0.00 0.060 0.000
#> SRR1643314     1  0.0963      0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643315     1  0.0963      0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643316     1  0.0963      0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643317     1  0.0963      0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643318     1  0.0963      0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643319     1  0.0880      0.867 0.968 0.000 0.00 0.032 0.000
#> SRR1643320     1  0.0963      0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643321     1  0.0963      0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643322     1  0.0963      0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643323     1  0.0963      0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643324     1  0.0963      0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643325     1  0.0963      0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643326     1  0.0963      0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643327     1  0.0963      0.867 0.964 0.000 0.00 0.036 0.000
#> SRR1643328     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643329     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643330     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643331     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643332     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643333     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643334     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643335     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643336     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643337     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643338     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643339     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643340     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643341     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643342     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643343     1  0.2230      0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643344     1  0.2230      0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643345     1  0.2230      0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643346     1  0.2230      0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643347     1  0.2230      0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643348     1  0.2230      0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643349     1  0.2230      0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643350     1  0.2230      0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643351     1  0.2230      0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643352     1  0.2230      0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643353     1  0.2230      0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643354     1  0.2230      0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643355     1  0.2230      0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643356     1  0.2230      0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643357     1  0.2230      0.822 0.884 0.000 0.00 0.116 0.000
#> SRR1643358     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643359     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643360     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643361     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643362     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643363     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643364     4  0.2516      0.762 0.140 0.000 0.00 0.860 0.000
#> SRR1643365     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643366     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643367     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643368     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643369     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643370     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643371     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643372     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643373     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643374     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643375     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643376     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643377     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643378     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643379     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643380     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643381     4  0.0162      0.715 0.004 0.000 0.00 0.996 0.000
#> SRR1643382     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643383     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643384     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643385     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643386     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643387     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643388     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643389     4  0.3452      0.793 0.244 0.000 0.00 0.756 0.000
#> SRR1643390     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643391     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643392     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643393     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643394     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643395     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643396     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643397     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643398     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643399     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643400     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643401     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643402     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643403     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643404     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643405     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643406     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643407     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643408     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643409     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643410     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643411     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643412     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643413     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643414     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643415     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643416     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643417     1  0.0000      0.868 1.000 0.000 0.00 0.000 0.000
#> SRR1643418     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643419     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643420     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643421     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643422     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643423     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643424     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643425     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643426     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643427     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643428     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643429     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643430     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643431     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643432     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643433     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643434     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643435     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643436     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643437     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643438     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643439     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643440     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643441     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643442     4  0.0290      0.714 0.000 0.000 0.00 0.992 0.008
#> SRR1643443     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643444     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643445     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643446     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643447     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643448     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643449     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643450     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643451     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643452     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643453     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643454     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643455     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643456     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643457     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643458     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643459     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643460     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643461     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643462     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643463     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643464     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643466     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643467     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643468     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643469     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643470     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643471     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643472     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643473     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643474     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643475     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643477     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643478     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643479     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643480     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643481     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643482     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643483     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643484     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643485     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643486     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643487     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643488     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643489     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643490     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643491     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643492     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643493     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643494     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643495     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643496     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643497     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643498     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643499     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643500     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643501     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643502     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643503     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643504     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643505     5  0.0290      0.000 0.000 0.008 0.00 0.000 0.992
#> SRR1643506     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643507     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643508     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643509     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643510     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643511     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643512     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643513     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643531     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643532     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643533     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643534     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643535     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643536     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643537     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643538     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643539     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643540     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643541     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643542     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643543     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643544     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643514     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643515     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643516     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643517     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643518     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643519     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643520     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643521     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643522     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643523     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643524     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643525     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643526     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643527     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643528     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643529     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643530     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643545     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643546     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643547     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643548     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643549     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643550     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643551     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643552     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643553     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643554     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643555     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643556     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643558     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643559     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643560     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643561     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643562     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643563     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643564     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643565     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643566     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643567     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643568     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643569     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643570     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643571     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000
#> SRR1643572     2  0.0000      1.000 0.000 1.000 0.00 0.000 0.000

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2   p3    p4    p5    p6
#> SRR1643167     1  0.0260      0.813 0.992 0.000 0.00 0.000 0.008 0.000
#> SRR1643168     1  0.0260      0.813 0.992 0.000 0.00 0.000 0.008 0.000
#> SRR1643169     1  0.0260      0.813 0.992 0.000 0.00 0.000 0.008 0.000
#> SRR1643170     1  0.0260      0.813 0.992 0.000 0.00 0.000 0.008 0.000
#> SRR1643171     1  0.0146      0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643172     1  0.0146      0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643173     1  0.0146      0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643174     1  0.0146      0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643175     1  0.0865      0.800 0.964 0.000 0.00 0.000 0.036 0.000
#> SRR1643176     1  0.0865      0.800 0.964 0.000 0.00 0.000 0.036 0.000
#> SRR1643177     1  0.0865      0.800 0.964 0.000 0.00 0.000 0.036 0.000
#> SRR1643178     1  0.0865      0.800 0.964 0.000 0.00 0.000 0.036 0.000
#> SRR1643180     1  0.0146      0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643181     1  0.0146      0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643182     1  0.0146      0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643183     1  0.0146      0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643184     1  0.0146      0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643185     1  0.0146      0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643186     1  0.0146      0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643187     1  0.1572      0.796 0.936 0.000 0.00 0.028 0.036 0.000
#> SRR1643188     1  0.1572      0.796 0.936 0.000 0.00 0.028 0.036 0.000
#> SRR1643189     1  0.1572      0.796 0.936 0.000 0.00 0.028 0.036 0.000
#> SRR1643190     1  0.1572      0.796 0.936 0.000 0.00 0.028 0.036 0.000
#> SRR1643191     1  0.0146      0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643192     1  0.0146      0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643193     1  0.0260      0.813 0.992 0.000 0.00 0.000 0.008 0.000
#> SRR1643194     1  0.0260      0.813 0.992 0.000 0.00 0.000 0.008 0.000
#> SRR1643195     1  0.2201      0.773 0.900 0.000 0.00 0.052 0.048 0.000
#> SRR1643196     1  0.2201      0.773 0.900 0.000 0.00 0.052 0.048 0.000
#> SRR1643197     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643198     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643199     1  0.0146      0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643200     1  0.0146      0.812 0.996 0.000 0.00 0.000 0.004 0.000
#> SRR1643201     1  0.1049      0.807 0.960 0.000 0.00 0.032 0.008 0.000
#> SRR1643202     1  0.1049      0.807 0.960 0.000 0.00 0.032 0.008 0.000
#> SRR1643203     1  0.1572      0.796 0.936 0.000 0.00 0.028 0.036 0.000
#> SRR1643204     1  0.1572      0.796 0.936 0.000 0.00 0.028 0.036 0.000
#> SRR1643205     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643206     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643207     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643208     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643209     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643210     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643211     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643212     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643213     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643214     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643215     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643216     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643217     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643218     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643219     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643220     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643221     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643222     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643223     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643224     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643225     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643226     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643227     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643228     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643229     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643230     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643231     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643232     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643233     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643234     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643235     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643236     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643237     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643238     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643239     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643240     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643241     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643242     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643243     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643245     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643246     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643247     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643248     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643249     3  0.0603      0.965 0.016 0.000 0.98 0.000 0.004 0.000
#> SRR1643250     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643251     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643252     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643253     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643254     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643255     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643256     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643257     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643258     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643259     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643260     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643261     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643262     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643263     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643264     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643266     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643267     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643268     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643269     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643270     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643271     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643272     1  0.4858      0.426 0.664 0.000 0.00 0.156 0.180 0.000
#> SRR1643273     1  0.5870     -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643274     1  0.5870     -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643275     1  0.5870     -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643276     1  0.5870     -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643277     1  0.5870     -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643278     1  0.5870     -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643279     1  0.5870     -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643280     1  0.5870     -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643281     1  0.5870     -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643282     1  0.5870     -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643283     1  0.5870     -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643284     1  0.5870     -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643285     1  0.5870     -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643286     1  0.5870     -0.157 0.480 0.000 0.00 0.244 0.276 0.000
#> SRR1643287     5  0.5240      0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643288     5  0.5240      0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643289     5  0.5240      0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643290     5  0.5240      0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643291     5  0.5240      0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643292     5  0.5240      0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643293     5  0.5240      0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643294     5  0.5240      0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643295     5  0.5240      0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643296     5  0.5240      0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643297     5  0.5240      0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643298     5  0.5240      0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643299     5  0.5240      0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643300     5  0.5240      0.578 0.136 0.000 0.00 0.276 0.588 0.000
#> SRR1643301     1  0.1845      0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643302     1  0.1845      0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643303     1  0.1845      0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643304     1  0.1845      0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643305     1  0.1845      0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643306     1  0.1845      0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643307     1  0.1845      0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643308     1  0.1845      0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643309     1  0.1845      0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643310     1  0.1845      0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643311     1  0.1845      0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643312     1  0.1845      0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643313     1  0.1845      0.786 0.920 0.000 0.00 0.052 0.028 0.000
#> SRR1643314     1  0.1334      0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643315     1  0.1334      0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643316     1  0.1334      0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643317     1  0.1334      0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643318     1  0.1334      0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643319     1  0.1049      0.806 0.960 0.000 0.00 0.032 0.008 0.000
#> SRR1643320     1  0.1334      0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643321     1  0.1334      0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643322     1  0.1334      0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643323     1  0.1334      0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643324     1  0.1334      0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643325     1  0.1334      0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643326     1  0.1334      0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643327     1  0.1334      0.802 0.948 0.000 0.00 0.032 0.020 0.000
#> SRR1643328     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643329     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643330     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643331     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643332     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643333     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643334     1  0.1663      0.715 0.912 0.000 0.00 0.000 0.088 0.000
#> SRR1643335     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643336     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643337     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643338     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643339     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643340     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643341     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643342     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643343     5  0.3817      0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643344     5  0.3817      0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643345     5  0.3817      0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643346     5  0.3817      0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643347     5  0.3817      0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643348     5  0.3817      0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643349     5  0.3817      0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643350     5  0.3817      0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643351     5  0.3817      0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643352     5  0.3817      0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643353     5  0.3817      0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643354     5  0.3817      0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643355     5  0.3817      0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643356     5  0.3817      0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643357     5  0.3817      0.681 0.432 0.000 0.00 0.000 0.568 0.000
#> SRR1643358     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643359     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643360     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643361     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643362     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643363     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643364     4  0.4219      0.611 0.036 0.000 0.00 0.660 0.304 0.000
#> SRR1643365     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643366     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643367     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643368     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643369     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643370     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643371     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643372     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643373     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643374     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643375     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643376     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643377     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643378     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643379     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643380     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643381     4  0.3050      0.604 0.000 0.000 0.00 0.764 0.236 0.000
#> SRR1643382     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643383     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643384     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643385     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643386     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643387     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643388     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643389     4  0.5304      0.624 0.136 0.000 0.00 0.572 0.292 0.000
#> SRR1643390     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643391     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643392     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643393     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643394     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643395     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643396     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643397     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643398     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643399     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643400     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643401     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643402     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643403     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643404     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643405     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643406     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643407     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643408     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643409     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643410     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643411     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643412     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643413     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643414     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643415     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643416     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643417     1  0.0000      0.814 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643418     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643419     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643420     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643421     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643422     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643423     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643424     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643425     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643426     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643427     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643428     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643429     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643430     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643431     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643432     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643433     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643434     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643435     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643436     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643437     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643438     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643439     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643440     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643441     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643442     4  0.0000      0.633 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643443     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643444     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643445     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643446     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643447     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643448     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643449     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643450     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643451     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643452     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643453     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643454     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643455     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643456     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643457     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643458     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643459     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643460     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643461     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643462     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643463     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643464     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643466     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643467     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643468     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643469     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643470     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643471     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643472     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643473     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643474     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643475     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643477     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643478     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643479     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643480     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643481     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643482     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643483     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643484     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643485     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643486     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643487     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643488     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643489     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643490     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643491     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643492     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643493     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643494     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643495     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643496     2  0.0458      0.951 0.000 0.984 0.00 0.000 0.000 0.016
#> SRR1643497     2  0.0260      0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643498     2  0.0260      0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643499     2  0.0260      0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643500     2  0.0260      0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643501     2  0.0260      0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643502     2  0.0260      0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643503     2  0.0260      0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643504     2  0.0260      0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643505     6  0.2664      0.000 0.000 0.000 0.00 0.000 0.184 0.816
#> SRR1643506     2  0.0260      0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643507     2  0.0260      0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643508     2  0.0260      0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643509     2  0.0260      0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643510     2  0.0260      0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643511     2  0.0260      0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643512     2  0.0260      0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643513     2  0.0260      0.950 0.000 0.992 0.00 0.000 0.000 0.008
#> SRR1643531     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643532     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643533     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643534     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643535     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643536     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643537     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643538     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643539     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643540     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643541     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643542     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643543     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643544     2  0.0937      0.945 0.000 0.960 0.00 0.000 0.000 0.040
#> SRR1643514     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643515     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643516     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643517     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643518     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643519     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643520     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643521     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643522     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643523     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643524     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643525     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643526     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643527     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643528     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643529     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643530     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643545     2  0.2300      0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643546     2  0.2300      0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643547     2  0.2300      0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643548     2  0.2300      0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643549     2  0.2300      0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643550     2  0.2300      0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643551     2  0.2300      0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643552     2  0.2300      0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643553     2  0.2300      0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643554     2  0.2300      0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643555     2  0.2300      0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643556     2  0.2300      0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643558     2  0.2300      0.897 0.000 0.856 0.00 0.000 0.000 0.144
#> SRR1643559     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643560     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643561     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643562     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643563     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643564     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643565     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643566     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643567     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643568     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643569     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643570     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643571     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096
#> SRR1643572     2  0.1765      0.929 0.000 0.904 0.00 0.000 0.000 0.096

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-CV-hclust-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-CV-hclust-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-CV-hclust-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-CV-hclust-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-CV-hclust-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-CV-hclust-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-CV-hclust-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-CV-hclust-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-CV-hclust-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-CV-hclust-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-CV-hclust-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-CV-hclust-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-CV-hclust-get-signatures-3

get_signatures(res, k = 5)

plot of chunk tab-CV-hclust-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-CV-hclust-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-CV-hclust-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-CV-hclust-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-CV-hclust-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)

plot of chunk tab-CV-hclust-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-CV-hclust-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk CV-hclust-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-CV-hclust-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-CV-hclust-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-CV-hclust-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-CV-hclust-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-CV-hclust-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk CV-hclust-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


CV:kmeans**

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["CV", "kmeans"]
# you can also extract it by
# res = res_list["CV:kmeans"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'CV' method.
#>   Subgroups are detected by 'kmeans' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 2.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk CV-kmeans-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk CV-kmeans-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000         0.4350 0.566   0.566
#> 3 3 0.634           0.695       0.832         0.3386 0.874   0.777
#> 4 4 0.538           0.629       0.695         0.1574 1.000   1.000
#> 5 5 0.584           0.578       0.747         0.0752 0.818   0.585
#> 6 6 0.601           0.563       0.719         0.0564 0.980   0.924

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 2

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1    p2    p3
#> SRR1643167     1  0.6168     0.1707 0.588 0.000 0.412
#> SRR1643168     1  0.6168     0.1707 0.588 0.000 0.412
#> SRR1643169     1  0.6168     0.1707 0.588 0.000 0.412
#> SRR1643170     1  0.6168     0.1707 0.588 0.000 0.412
#> SRR1643171     1  0.6225     0.0929 0.568 0.000 0.432
#> SRR1643172     1  0.6225     0.0929 0.568 0.000 0.432
#> SRR1643173     1  0.6225     0.0929 0.568 0.000 0.432
#> SRR1643174     1  0.6225     0.0929 0.568 0.000 0.432
#> SRR1643175     1  0.4842     0.5702 0.776 0.000 0.224
#> SRR1643176     1  0.4842     0.5702 0.776 0.000 0.224
#> SRR1643177     1  0.4842     0.5702 0.776 0.000 0.224
#> SRR1643178     1  0.4842     0.5702 0.776 0.000 0.224
#> SRR1643180     1  0.6215     0.1104 0.572 0.000 0.428
#> SRR1643181     1  0.6215     0.1104 0.572 0.000 0.428
#> SRR1643182     1  0.6215     0.1104 0.572 0.000 0.428
#> SRR1643183     1  0.6215     0.1104 0.572 0.000 0.428
#> SRR1643184     1  0.6215     0.1104 0.572 0.000 0.428
#> SRR1643185     1  0.6215     0.1104 0.572 0.000 0.428
#> SRR1643186     1  0.6215     0.1104 0.572 0.000 0.428
#> SRR1643187     1  0.4702     0.5865 0.788 0.000 0.212
#> SRR1643188     1  0.4702     0.5865 0.788 0.000 0.212
#> SRR1643189     1  0.4702     0.5865 0.788 0.000 0.212
#> SRR1643190     1  0.4702     0.5865 0.788 0.000 0.212
#> SRR1643191     1  0.6204     0.1289 0.576 0.000 0.424
#> SRR1643192     1  0.6204     0.1289 0.576 0.000 0.424
#> SRR1643193     1  0.4605     0.5907 0.796 0.000 0.204
#> SRR1643194     1  0.4654     0.5870 0.792 0.000 0.208
#> SRR1643195     1  0.0424     0.7081 0.992 0.000 0.008
#> SRR1643196     1  0.0424     0.7081 0.992 0.000 0.008
#> SRR1643197     1  0.6192     0.1447 0.580 0.000 0.420
#> SRR1643198     1  0.6192     0.1447 0.580 0.000 0.420
#> SRR1643199     1  0.6168     0.1707 0.588 0.000 0.412
#> SRR1643200     1  0.6168     0.1707 0.588 0.000 0.412
#> SRR1643201     1  0.0424     0.7081 0.992 0.000 0.008
#> SRR1643202     1  0.0424     0.7081 0.992 0.000 0.008
#> SRR1643203     1  0.5678     0.4248 0.684 0.000 0.316
#> SRR1643204     1  0.5678     0.4248 0.684 0.000 0.316
#> SRR1643205     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643206     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643207     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643208     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643209     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643210     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643211     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643212     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643213     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643214     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643215     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643216     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643217     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643218     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643219     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643220     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643221     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643222     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643223     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643224     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643225     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643226     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643227     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643228     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643229     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643230     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643231     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643232     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643233     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643234     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643235     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643236     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643237     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643238     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643239     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643240     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643241     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643242     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643243     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643245     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643246     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643247     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643248     3  0.5591     0.9983 0.304 0.000 0.696
#> SRR1643249     3  0.5810     0.9225 0.336 0.000 0.664
#> SRR1643250     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643251     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643252     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643253     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643254     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643255     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643256     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643257     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643258     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643259     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643260     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643261     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643262     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643263     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643264     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643266     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643267     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643268     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643269     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643270     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643271     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643272     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643273     1  0.1964     0.6978 0.944 0.000 0.056
#> SRR1643274     1  0.1964     0.6978 0.944 0.000 0.056
#> SRR1643275     1  0.1964     0.6978 0.944 0.000 0.056
#> SRR1643276     1  0.1964     0.6978 0.944 0.000 0.056
#> SRR1643277     1  0.1964     0.6978 0.944 0.000 0.056
#> SRR1643278     1  0.1964     0.6978 0.944 0.000 0.056
#> SRR1643279     1  0.1964     0.6978 0.944 0.000 0.056
#> SRR1643280     1  0.1964     0.6978 0.944 0.000 0.056
#> SRR1643281     1  0.1964     0.6978 0.944 0.000 0.056
#> SRR1643282     1  0.1964     0.6978 0.944 0.000 0.056
#> SRR1643283     1  0.1964     0.6978 0.944 0.000 0.056
#> SRR1643284     1  0.1964     0.6978 0.944 0.000 0.056
#> SRR1643285     1  0.1964     0.6978 0.944 0.000 0.056
#> SRR1643286     1  0.1964     0.6978 0.944 0.000 0.056
#> SRR1643287     1  0.1031     0.6996 0.976 0.000 0.024
#> SRR1643288     1  0.1031     0.6996 0.976 0.000 0.024
#> SRR1643289     1  0.1031     0.6996 0.976 0.000 0.024
#> SRR1643290     1  0.1031     0.6996 0.976 0.000 0.024
#> SRR1643291     1  0.1031     0.6996 0.976 0.000 0.024
#> SRR1643292     1  0.1031     0.6996 0.976 0.000 0.024
#> SRR1643293     1  0.1031     0.6996 0.976 0.000 0.024
#> SRR1643294     1  0.1031     0.6996 0.976 0.000 0.024
#> SRR1643295     1  0.1031     0.6996 0.976 0.000 0.024
#> SRR1643296     1  0.1031     0.6996 0.976 0.000 0.024
#> SRR1643297     1  0.1031     0.6996 0.976 0.000 0.024
#> SRR1643298     1  0.1031     0.6996 0.976 0.000 0.024
#> SRR1643299     1  0.1031     0.6996 0.976 0.000 0.024
#> SRR1643300     1  0.1031     0.6996 0.976 0.000 0.024
#> SRR1643301     1  0.0592     0.7101 0.988 0.000 0.012
#> SRR1643302     1  0.0592     0.7101 0.988 0.000 0.012
#> SRR1643303     1  0.0592     0.7101 0.988 0.000 0.012
#> SRR1643304     1  0.0592     0.7101 0.988 0.000 0.012
#> SRR1643305     1  0.0592     0.7101 0.988 0.000 0.012
#> SRR1643306     1  0.0592     0.7101 0.988 0.000 0.012
#> SRR1643307     1  0.0592     0.7101 0.988 0.000 0.012
#> SRR1643308     1  0.0592     0.7101 0.988 0.000 0.012
#> SRR1643309     1  0.0592     0.7101 0.988 0.000 0.012
#> SRR1643310     1  0.0592     0.7101 0.988 0.000 0.012
#> SRR1643311     1  0.0592     0.7101 0.988 0.000 0.012
#> SRR1643312     1  0.0592     0.7101 0.988 0.000 0.012
#> SRR1643313     1  0.0592     0.7101 0.988 0.000 0.012
#> SRR1643314     1  0.5058     0.5365 0.756 0.000 0.244
#> SRR1643315     1  0.4796     0.5683 0.780 0.000 0.220
#> SRR1643316     1  0.4796     0.5683 0.780 0.000 0.220
#> SRR1643317     1  0.4796     0.5683 0.780 0.000 0.220
#> SRR1643318     1  0.4796     0.5683 0.780 0.000 0.220
#> SRR1643319     1  0.4702     0.5767 0.788 0.000 0.212
#> SRR1643320     1  0.4796     0.5683 0.780 0.000 0.220
#> SRR1643321     1  0.4796     0.5683 0.780 0.000 0.220
#> SRR1643322     1  0.4796     0.5683 0.780 0.000 0.220
#> SRR1643323     1  0.4796     0.5683 0.780 0.000 0.220
#> SRR1643324     1  0.4750     0.5724 0.784 0.000 0.216
#> SRR1643325     1  0.4796     0.5683 0.780 0.000 0.220
#> SRR1643326     1  0.4796     0.5683 0.780 0.000 0.220
#> SRR1643327     1  0.4796     0.5683 0.780 0.000 0.220
#> SRR1643328     1  0.6225     0.0726 0.568 0.000 0.432
#> SRR1643329     1  0.6225     0.0726 0.568 0.000 0.432
#> SRR1643330     1  0.6225     0.0726 0.568 0.000 0.432
#> SRR1643331     1  0.6225     0.0726 0.568 0.000 0.432
#> SRR1643332     1  0.6225     0.0726 0.568 0.000 0.432
#> SRR1643333     1  0.6225     0.0726 0.568 0.000 0.432
#> SRR1643334     1  0.6204     0.1091 0.576 0.000 0.424
#> SRR1643335     1  0.6225     0.0726 0.568 0.000 0.432
#> SRR1643336     1  0.6225     0.0726 0.568 0.000 0.432
#> SRR1643337     1  0.6225     0.0726 0.568 0.000 0.432
#> SRR1643338     1  0.6225     0.0726 0.568 0.000 0.432
#> SRR1643339     1  0.6225     0.0726 0.568 0.000 0.432
#> SRR1643340     1  0.6225     0.0726 0.568 0.000 0.432
#> SRR1643341     1  0.6225     0.0726 0.568 0.000 0.432
#> SRR1643342     1  0.6225     0.0726 0.568 0.000 0.432
#> SRR1643343     1  0.5650     0.4468 0.688 0.000 0.312
#> SRR1643344     1  0.5650     0.4468 0.688 0.000 0.312
#> SRR1643345     1  0.5650     0.4468 0.688 0.000 0.312
#> SRR1643346     1  0.5650     0.4468 0.688 0.000 0.312
#> SRR1643347     1  0.5650     0.4468 0.688 0.000 0.312
#> SRR1643348     1  0.5650     0.4468 0.688 0.000 0.312
#> SRR1643349     1  0.5650     0.4468 0.688 0.000 0.312
#> SRR1643350     1  0.5650     0.4468 0.688 0.000 0.312
#> SRR1643351     1  0.5650     0.4468 0.688 0.000 0.312
#> SRR1643352     1  0.5650     0.4468 0.688 0.000 0.312
#> SRR1643353     1  0.5650     0.4468 0.688 0.000 0.312
#> SRR1643354     1  0.5650     0.4468 0.688 0.000 0.312
#> SRR1643355     1  0.5650     0.4468 0.688 0.000 0.312
#> SRR1643356     1  0.5650     0.4468 0.688 0.000 0.312
#> SRR1643357     1  0.5650     0.4468 0.688 0.000 0.312
#> SRR1643358     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643359     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643360     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643361     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643362     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643363     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643364     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643365     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643366     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643367     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643368     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643369     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643370     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643371     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643372     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643373     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643374     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643375     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643376     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643377     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643378     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643379     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643380     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643381     1  0.0424     0.7068 0.992 0.000 0.008
#> SRR1643382     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643383     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643384     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643385     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643386     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643387     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643388     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643389     1  0.0000     0.7110 1.000 0.000 0.000
#> SRR1643390     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643391     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643392     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643393     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643394     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643395     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643396     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643397     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643398     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643399     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643400     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643401     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643402     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643403     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643404     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643405     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643406     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643407     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643408     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643409     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643410     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643411     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643412     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643413     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643414     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643415     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643416     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643417     1  0.6204     0.1263 0.576 0.000 0.424
#> SRR1643418     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643419     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643420     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643421     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643422     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643423     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643424     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643425     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643426     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643427     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643428     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643429     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643430     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643431     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643432     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643433     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643434     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643435     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643436     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643437     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643438     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643439     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643440     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643441     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643442     1  0.1289     0.6904 0.968 0.000 0.032
#> SRR1643443     2  0.4842     0.9133 0.000 0.776 0.224
#> SRR1643444     2  0.4842     0.9133 0.000 0.776 0.224
#> SRR1643445     2  0.4842     0.9133 0.000 0.776 0.224
#> SRR1643446     2  0.4842     0.9133 0.000 0.776 0.224
#> SRR1643447     2  0.4842     0.9133 0.000 0.776 0.224
#> SRR1643448     2  0.4842     0.9133 0.000 0.776 0.224
#> SRR1643449     2  0.4842     0.9133 0.000 0.776 0.224
#> SRR1643450     2  0.4842     0.9133 0.000 0.776 0.224
#> SRR1643451     2  0.4842     0.9133 0.000 0.776 0.224
#> SRR1643452     2  0.4842     0.9133 0.000 0.776 0.224
#> SRR1643453     2  0.4842     0.9133 0.000 0.776 0.224
#> SRR1643454     2  0.4842     0.9133 0.000 0.776 0.224
#> SRR1643455     2  0.4842     0.9133 0.000 0.776 0.224
#> SRR1643456     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643457     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643458     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643459     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643460     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643461     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643462     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643463     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643464     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643466     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643467     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643468     2  0.0424     0.9343 0.000 0.992 0.008
#> SRR1643469     2  0.0424     0.9343 0.000 0.992 0.008
#> SRR1643470     2  0.0424     0.9343 0.000 0.992 0.008
#> SRR1643471     2  0.0424     0.9343 0.000 0.992 0.008
#> SRR1643472     2  0.0424     0.9343 0.000 0.992 0.008
#> SRR1643473     2  0.0424     0.9343 0.000 0.992 0.008
#> SRR1643474     2  0.0424     0.9343 0.000 0.992 0.008
#> SRR1643475     2  0.0424     0.9343 0.000 0.992 0.008
#> SRR1643477     2  0.0424     0.9343 0.000 0.992 0.008
#> SRR1643478     2  0.0424     0.9343 0.000 0.992 0.008
#> SRR1643479     2  0.0424     0.9343 0.000 0.992 0.008
#> SRR1643480     2  0.0424     0.9343 0.000 0.992 0.008
#> SRR1643481     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643482     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643483     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643484     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643485     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643486     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643487     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643488     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643489     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643490     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643491     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643492     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643493     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643494     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643495     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643496     2  0.0000     0.9360 0.000 1.000 0.000
#> SRR1643497     2  0.2878     0.9284 0.000 0.904 0.096
#> SRR1643498     2  0.2878     0.9284 0.000 0.904 0.096
#> SRR1643499     2  0.2878     0.9284 0.000 0.904 0.096
#> SRR1643500     2  0.2878     0.9284 0.000 0.904 0.096
#> SRR1643501     2  0.2878     0.9284 0.000 0.904 0.096
#> SRR1643502     2  0.2878     0.9284 0.000 0.904 0.096
#> SRR1643503     2  0.2878     0.9284 0.000 0.904 0.096
#> SRR1643504     2  0.2878     0.9284 0.000 0.904 0.096
#> SRR1643505     2  0.4235     0.9292 0.000 0.824 0.176
#> SRR1643506     2  0.2878     0.9284 0.000 0.904 0.096
#> SRR1643507     2  0.2878     0.9284 0.000 0.904 0.096
#> SRR1643508     2  0.2878     0.9284 0.000 0.904 0.096
#> SRR1643509     2  0.2878     0.9284 0.000 0.904 0.096
#> SRR1643510     2  0.2878     0.9284 0.000 0.904 0.096
#> SRR1643511     2  0.2878     0.9284 0.000 0.904 0.096
#> SRR1643512     2  0.2878     0.9284 0.000 0.904 0.096
#> SRR1643513     2  0.2878     0.9284 0.000 0.904 0.096
#> SRR1643531     2  0.4555     0.9204 0.000 0.800 0.200
#> SRR1643532     2  0.4555     0.9204 0.000 0.800 0.200
#> SRR1643533     2  0.4555     0.9204 0.000 0.800 0.200
#> SRR1643534     2  0.4555     0.9204 0.000 0.800 0.200
#> SRR1643535     2  0.4555     0.9204 0.000 0.800 0.200
#> SRR1643536     2  0.4555     0.9204 0.000 0.800 0.200
#> SRR1643537     2  0.4555     0.9204 0.000 0.800 0.200
#> SRR1643538     2  0.4555     0.9204 0.000 0.800 0.200
#> SRR1643539     2  0.4555     0.9204 0.000 0.800 0.200
#> SRR1643540     2  0.4555     0.9204 0.000 0.800 0.200
#> SRR1643541     2  0.4555     0.9204 0.000 0.800 0.200
#> SRR1643542     2  0.4555     0.9204 0.000 0.800 0.200
#> SRR1643543     2  0.4555     0.9204 0.000 0.800 0.200
#> SRR1643544     2  0.4555     0.9204 0.000 0.800 0.200
#> SRR1643514     2  0.3551     0.9333 0.000 0.868 0.132
#> SRR1643515     2  0.3551     0.9333 0.000 0.868 0.132
#> SRR1643516     2  0.3551     0.9333 0.000 0.868 0.132
#> SRR1643517     2  0.3551     0.9333 0.000 0.868 0.132
#> SRR1643518     2  0.3551     0.9333 0.000 0.868 0.132
#> SRR1643519     2  0.3551     0.9333 0.000 0.868 0.132
#> SRR1643520     2  0.3551     0.9333 0.000 0.868 0.132
#> SRR1643521     2  0.3551     0.9333 0.000 0.868 0.132
#> SRR1643522     2  0.3551     0.9333 0.000 0.868 0.132
#> SRR1643523     2  0.3551     0.9333 0.000 0.868 0.132
#> SRR1643524     2  0.3551     0.9333 0.000 0.868 0.132
#> SRR1643525     2  0.3551     0.9333 0.000 0.868 0.132
#> SRR1643526     2  0.3551     0.9333 0.000 0.868 0.132
#> SRR1643527     2  0.3551     0.9333 0.000 0.868 0.132
#> SRR1643528     2  0.3551     0.9333 0.000 0.868 0.132
#> SRR1643529     2  0.3551     0.9333 0.000 0.868 0.132
#> SRR1643530     2  0.3551     0.9333 0.000 0.868 0.132
#> SRR1643545     2  0.0424     0.9370 0.000 0.992 0.008
#> SRR1643546     2  0.0424     0.9370 0.000 0.992 0.008
#> SRR1643547     2  0.0424     0.9370 0.000 0.992 0.008
#> SRR1643548     2  0.0424     0.9370 0.000 0.992 0.008
#> SRR1643549     2  0.0424     0.9370 0.000 0.992 0.008
#> SRR1643550     2  0.0424     0.9370 0.000 0.992 0.008
#> SRR1643551     2  0.0424     0.9370 0.000 0.992 0.008
#> SRR1643552     2  0.0424     0.9370 0.000 0.992 0.008
#> SRR1643553     2  0.0424     0.9370 0.000 0.992 0.008
#> SRR1643554     2  0.0424     0.9370 0.000 0.992 0.008
#> SRR1643555     2  0.0424     0.9370 0.000 0.992 0.008
#> SRR1643556     2  0.0424     0.9370 0.000 0.992 0.008
#> SRR1643558     2  0.0424     0.9370 0.000 0.992 0.008
#> SRR1643559     2  0.4062     0.9295 0.000 0.836 0.164
#> SRR1643560     2  0.4062     0.9295 0.000 0.836 0.164
#> SRR1643561     2  0.4062     0.9295 0.000 0.836 0.164
#> SRR1643562     2  0.4062     0.9295 0.000 0.836 0.164
#> SRR1643563     2  0.4062     0.9295 0.000 0.836 0.164
#> SRR1643564     2  0.4062     0.9295 0.000 0.836 0.164
#> SRR1643565     2  0.4062     0.9295 0.000 0.836 0.164
#> SRR1643566     2  0.4062     0.9295 0.000 0.836 0.164
#> SRR1643567     2  0.4062     0.9295 0.000 0.836 0.164
#> SRR1643568     2  0.4062     0.9295 0.000 0.836 0.164
#> SRR1643569     2  0.4062     0.9295 0.000 0.836 0.164
#> SRR1643570     2  0.4062     0.9295 0.000 0.836 0.164
#> SRR1643571     2  0.4062     0.9295 0.000 0.836 0.164
#> SRR1643572     2  0.4062     0.9295 0.000 0.836 0.164

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1    p2    p3 p4
#> SRR1643167     1  0.7609      0.256 0.464 0.000 0.312 NA
#> SRR1643168     1  0.7609      0.256 0.464 0.000 0.312 NA
#> SRR1643169     1  0.7609      0.256 0.464 0.000 0.312 NA
#> SRR1643170     1  0.7609      0.256 0.464 0.000 0.312 NA
#> SRR1643171     1  0.7674      0.217 0.436 0.000 0.340 NA
#> SRR1643172     1  0.7674      0.217 0.436 0.000 0.340 NA
#> SRR1643173     1  0.7674      0.217 0.436 0.000 0.340 NA
#> SRR1643174     1  0.7674      0.217 0.436 0.000 0.340 NA
#> SRR1643175     1  0.6500      0.430 0.620 0.000 0.120 NA
#> SRR1643176     1  0.6500      0.430 0.620 0.000 0.120 NA
#> SRR1643177     1  0.6500      0.430 0.620 0.000 0.120 NA
#> SRR1643178     1  0.6500      0.430 0.620 0.000 0.120 NA
#> SRR1643180     1  0.7659      0.226 0.444 0.000 0.332 NA
#> SRR1643181     1  0.7659      0.226 0.444 0.000 0.332 NA
#> SRR1643182     1  0.7659      0.226 0.444 0.000 0.332 NA
#> SRR1643183     1  0.7659      0.226 0.444 0.000 0.332 NA
#> SRR1643184     1  0.7659      0.226 0.444 0.000 0.332 NA
#> SRR1643185     1  0.7659      0.226 0.444 0.000 0.332 NA
#> SRR1643186     1  0.7659      0.226 0.444 0.000 0.332 NA
#> SRR1643187     1  0.6549      0.428 0.612 0.000 0.120 NA
#> SRR1643188     1  0.6549      0.428 0.612 0.000 0.120 NA
#> SRR1643189     1  0.6549      0.428 0.612 0.000 0.120 NA
#> SRR1643190     1  0.6549      0.428 0.612 0.000 0.120 NA
#> SRR1643191     1  0.7659      0.226 0.444 0.000 0.332 NA
#> SRR1643192     1  0.7659      0.226 0.444 0.000 0.332 NA
#> SRR1643193     1  0.6560      0.428 0.620 0.000 0.132 NA
#> SRR1643194     1  0.6560      0.428 0.620 0.000 0.132 NA
#> SRR1643195     1  0.3257      0.548 0.844 0.000 0.004 NA
#> SRR1643196     1  0.3257      0.548 0.844 0.000 0.004 NA
#> SRR1643197     1  0.7631      0.241 0.456 0.000 0.320 NA
#> SRR1643198     1  0.7631      0.241 0.456 0.000 0.320 NA
#> SRR1643199     1  0.7631      0.245 0.456 0.000 0.320 NA
#> SRR1643200     1  0.7631      0.245 0.456 0.000 0.320 NA
#> SRR1643201     1  0.3853      0.515 0.820 0.000 0.020 NA
#> SRR1643202     1  0.3853      0.515 0.820 0.000 0.020 NA
#> SRR1643203     1  0.7129      0.376 0.560 0.000 0.196 NA
#> SRR1643204     1  0.7129      0.376 0.560 0.000 0.196 NA
#> SRR1643205     3  0.3390      0.987 0.132 0.000 0.852 NA
#> SRR1643206     3  0.3390      0.987 0.132 0.000 0.852 NA
#> SRR1643207     3  0.3390      0.987 0.132 0.000 0.852 NA
#> SRR1643208     3  0.3390      0.987 0.132 0.000 0.852 NA
#> SRR1643209     3  0.3390      0.987 0.132 0.000 0.852 NA
#> SRR1643210     3  0.3390      0.987 0.132 0.000 0.852 NA
#> SRR1643211     3  0.2999      0.988 0.132 0.000 0.864 NA
#> SRR1643212     3  0.2999      0.988 0.132 0.000 0.864 NA
#> SRR1643213     3  0.2999      0.988 0.132 0.000 0.864 NA
#> SRR1643214     3  0.2999      0.988 0.132 0.000 0.864 NA
#> SRR1643215     3  0.3271      0.987 0.132 0.000 0.856 NA
#> SRR1643216     3  0.3271      0.987 0.132 0.000 0.856 NA
#> SRR1643217     3  0.3271      0.987 0.132 0.000 0.856 NA
#> SRR1643218     3  0.3271      0.987 0.132 0.000 0.856 NA
#> SRR1643219     3  0.3271      0.987 0.132 0.000 0.856 NA
#> SRR1643220     3  0.3271      0.987 0.132 0.000 0.856 NA
#> SRR1643221     3  0.3271      0.988 0.132 0.000 0.856 NA
#> SRR1643222     3  0.3271      0.988 0.132 0.000 0.856 NA
#> SRR1643223     3  0.3390      0.987 0.132 0.000 0.852 NA
#> SRR1643224     3  0.3390      0.987 0.132 0.000 0.852 NA
#> SRR1643225     3  0.3390      0.987 0.132 0.000 0.852 NA
#> SRR1643226     3  0.3390      0.987 0.132 0.000 0.852 NA
#> SRR1643227     3  0.3390      0.987 0.132 0.000 0.852 NA
#> SRR1643228     3  0.3390      0.987 0.132 0.000 0.852 NA
#> SRR1643229     3  0.3390      0.987 0.132 0.000 0.852 NA
#> SRR1643230     3  0.3390      0.987 0.132 0.000 0.852 NA
#> SRR1643231     3  0.3390      0.987 0.132 0.000 0.852 NA
#> SRR1643232     3  0.3390      0.987 0.132 0.000 0.852 NA
#> SRR1643233     3  0.3271      0.987 0.132 0.000 0.856 NA
#> SRR1643234     3  0.3271      0.987 0.132 0.000 0.856 NA
#> SRR1643235     3  0.3271      0.988 0.132 0.000 0.856 NA
#> SRR1643236     3  0.3271      0.988 0.132 0.000 0.856 NA
#> SRR1643237     3  0.3271      0.988 0.132 0.000 0.856 NA
#> SRR1643238     3  0.3271      0.987 0.132 0.000 0.856 NA
#> SRR1643239     3  0.3271      0.987 0.132 0.000 0.856 NA
#> SRR1643240     3  0.3271      0.987 0.132 0.000 0.856 NA
#> SRR1643241     3  0.3271      0.987 0.132 0.000 0.856 NA
#> SRR1643242     3  0.3390      0.986 0.132 0.000 0.852 NA
#> SRR1643243     3  0.3390      0.986 0.132 0.000 0.852 NA
#> SRR1643245     3  0.3390      0.986 0.132 0.000 0.852 NA
#> SRR1643246     3  0.3390      0.986 0.132 0.000 0.852 NA
#> SRR1643247     3  0.3390      0.986 0.132 0.000 0.852 NA
#> SRR1643248     3  0.3271      0.988 0.132 0.000 0.856 NA
#> SRR1643249     3  0.4701      0.878 0.164 0.000 0.780 NA
#> SRR1643250     1  0.2973      0.548 0.856 0.000 0.000 NA
#> SRR1643251     1  0.2973      0.548 0.856 0.000 0.000 NA
#> SRR1643252     1  0.2973      0.548 0.856 0.000 0.000 NA
#> SRR1643253     1  0.2973      0.548 0.856 0.000 0.000 NA
#> SRR1643254     1  0.2973      0.548 0.856 0.000 0.000 NA
#> SRR1643255     1  0.2973      0.548 0.856 0.000 0.000 NA
#> SRR1643256     1  0.2973      0.548 0.856 0.000 0.000 NA
#> SRR1643257     1  0.2973      0.548 0.856 0.000 0.000 NA
#> SRR1643258     1  0.2973      0.548 0.856 0.000 0.000 NA
#> SRR1643259     1  0.2973      0.548 0.856 0.000 0.000 NA
#> SRR1643260     1  0.2973      0.548 0.856 0.000 0.000 NA
#> SRR1643261     1  0.2973      0.548 0.856 0.000 0.000 NA
#> SRR1643262     1  0.3024      0.548 0.852 0.000 0.000 NA
#> SRR1643263     1  0.3024      0.548 0.852 0.000 0.000 NA
#> SRR1643264     1  0.3024      0.548 0.852 0.000 0.000 NA
#> SRR1643266     1  0.3024      0.548 0.852 0.000 0.000 NA
#> SRR1643267     1  0.3024      0.548 0.852 0.000 0.000 NA
#> SRR1643268     1  0.3024      0.548 0.852 0.000 0.000 NA
#> SRR1643269     1  0.3024      0.548 0.852 0.000 0.000 NA
#> SRR1643270     1  0.3024      0.548 0.852 0.000 0.000 NA
#> SRR1643271     1  0.3024      0.548 0.852 0.000 0.000 NA
#> SRR1643272     1  0.3024      0.548 0.852 0.000 0.000 NA
#> SRR1643273     1  0.3037      0.534 0.880 0.000 0.020 NA
#> SRR1643274     1  0.3037      0.534 0.880 0.000 0.020 NA
#> SRR1643275     1  0.3037      0.534 0.880 0.000 0.020 NA
#> SRR1643276     1  0.3037      0.534 0.880 0.000 0.020 NA
#> SRR1643277     1  0.3037      0.534 0.880 0.000 0.020 NA
#> SRR1643278     1  0.3037      0.534 0.880 0.000 0.020 NA
#> SRR1643279     1  0.3037      0.534 0.880 0.000 0.020 NA
#> SRR1643280     1  0.3037      0.534 0.880 0.000 0.020 NA
#> SRR1643281     1  0.3037      0.534 0.880 0.000 0.020 NA
#> SRR1643282     1  0.3037      0.534 0.880 0.000 0.020 NA
#> SRR1643283     1  0.3037      0.534 0.880 0.000 0.020 NA
#> SRR1643284     1  0.3037      0.534 0.880 0.000 0.020 NA
#> SRR1643285     1  0.3037      0.534 0.880 0.000 0.020 NA
#> SRR1643286     1  0.3037      0.534 0.880 0.000 0.020 NA
#> SRR1643287     1  0.4608      0.503 0.692 0.000 0.004 NA
#> SRR1643288     1  0.4608      0.503 0.692 0.000 0.004 NA
#> SRR1643289     1  0.4608      0.503 0.692 0.000 0.004 NA
#> SRR1643290     1  0.4608      0.503 0.692 0.000 0.004 NA
#> SRR1643291     1  0.4608      0.503 0.692 0.000 0.004 NA
#> SRR1643292     1  0.4608      0.503 0.692 0.000 0.004 NA
#> SRR1643293     1  0.4608      0.503 0.692 0.000 0.004 NA
#> SRR1643294     1  0.4608      0.503 0.692 0.000 0.004 NA
#> SRR1643295     1  0.4608      0.503 0.692 0.000 0.004 NA
#> SRR1643296     1  0.4608      0.503 0.692 0.000 0.004 NA
#> SRR1643297     1  0.4608      0.503 0.692 0.000 0.004 NA
#> SRR1643298     1  0.4608      0.503 0.692 0.000 0.004 NA
#> SRR1643299     1  0.4608      0.503 0.692 0.000 0.004 NA
#> SRR1643300     1  0.4608      0.503 0.692 0.000 0.004 NA
#> SRR1643301     1  0.1610      0.546 0.952 0.000 0.016 NA
#> SRR1643302     1  0.1706      0.546 0.948 0.000 0.016 NA
#> SRR1643303     1  0.1610      0.546 0.952 0.000 0.016 NA
#> SRR1643304     1  0.1610      0.546 0.952 0.000 0.016 NA
#> SRR1643305     1  0.1888      0.545 0.940 0.000 0.016 NA
#> SRR1643306     1  0.1610      0.546 0.952 0.000 0.016 NA
#> SRR1643307     1  0.1610      0.546 0.952 0.000 0.016 NA
#> SRR1643308     1  0.1610      0.546 0.952 0.000 0.016 NA
#> SRR1643309     1  0.1610      0.546 0.952 0.000 0.016 NA
#> SRR1643310     1  0.1610      0.546 0.952 0.000 0.016 NA
#> SRR1643311     1  0.1610      0.546 0.952 0.000 0.016 NA
#> SRR1643312     1  0.1610      0.546 0.952 0.000 0.016 NA
#> SRR1643313     1  0.1510      0.547 0.956 0.000 0.016 NA
#> SRR1643314     1  0.6695      0.416 0.616 0.000 0.164 NA
#> SRR1643315     1  0.6656      0.419 0.620 0.000 0.160 NA
#> SRR1643316     1  0.6656      0.419 0.620 0.000 0.160 NA
#> SRR1643317     1  0.6656      0.419 0.620 0.000 0.160 NA
#> SRR1643318     1  0.6656      0.419 0.620 0.000 0.160 NA
#> SRR1643319     1  0.6656      0.419 0.620 0.000 0.160 NA
#> SRR1643320     1  0.6656      0.419 0.620 0.000 0.160 NA
#> SRR1643321     1  0.6656      0.419 0.620 0.000 0.160 NA
#> SRR1643322     1  0.6656      0.419 0.620 0.000 0.160 NA
#> SRR1643323     1  0.6656      0.419 0.620 0.000 0.160 NA
#> SRR1643324     1  0.6656      0.419 0.620 0.000 0.160 NA
#> SRR1643325     1  0.6656      0.419 0.620 0.000 0.160 NA
#> SRR1643326     1  0.6656      0.419 0.620 0.000 0.160 NA
#> SRR1643327     1  0.6656      0.419 0.620 0.000 0.160 NA
#> SRR1643328     1  0.7619      0.203 0.436 0.000 0.356 NA
#> SRR1643329     1  0.7619      0.203 0.436 0.000 0.356 NA
#> SRR1643330     1  0.7619      0.203 0.436 0.000 0.356 NA
#> SRR1643331     1  0.7619      0.203 0.436 0.000 0.356 NA
#> SRR1643332     1  0.7619      0.203 0.436 0.000 0.356 NA
#> SRR1643333     1  0.7619      0.203 0.436 0.000 0.356 NA
#> SRR1643334     1  0.7654      0.217 0.440 0.000 0.340 NA
#> SRR1643335     1  0.7619      0.203 0.436 0.000 0.356 NA
#> SRR1643336     1  0.7619      0.203 0.436 0.000 0.356 NA
#> SRR1643337     1  0.7619      0.203 0.436 0.000 0.356 NA
#> SRR1643338     1  0.7619      0.203 0.436 0.000 0.356 NA
#> SRR1643339     1  0.7619      0.203 0.436 0.000 0.356 NA
#> SRR1643340     1  0.7619      0.203 0.436 0.000 0.356 NA
#> SRR1643341     1  0.7619      0.203 0.436 0.000 0.356 NA
#> SRR1643342     1  0.7619      0.203 0.436 0.000 0.356 NA
#> SRR1643343     1  0.7211      0.369 0.548 0.000 0.204 NA
#> SRR1643344     1  0.7211      0.369 0.548 0.000 0.204 NA
#> SRR1643345     1  0.7211      0.369 0.548 0.000 0.204 NA
#> SRR1643346     1  0.7211      0.369 0.548 0.000 0.204 NA
#> SRR1643347     1  0.7211      0.369 0.548 0.000 0.204 NA
#> SRR1643348     1  0.7211      0.369 0.548 0.000 0.204 NA
#> SRR1643349     1  0.7211      0.369 0.548 0.000 0.204 NA
#> SRR1643350     1  0.7211      0.369 0.548 0.000 0.204 NA
#> SRR1643351     1  0.7211      0.369 0.548 0.000 0.204 NA
#> SRR1643352     1  0.7211      0.369 0.548 0.000 0.204 NA
#> SRR1643353     1  0.7211      0.369 0.548 0.000 0.204 NA
#> SRR1643354     1  0.7211      0.369 0.548 0.000 0.204 NA
#> SRR1643355     1  0.7211      0.369 0.548 0.000 0.204 NA
#> SRR1643356     1  0.7211      0.369 0.548 0.000 0.204 NA
#> SRR1643357     1  0.7211      0.369 0.548 0.000 0.204 NA
#> SRR1643358     1  0.3569      0.543 0.804 0.000 0.000 NA
#> SRR1643359     1  0.3569      0.543 0.804 0.000 0.000 NA
#> SRR1643360     1  0.3569      0.543 0.804 0.000 0.000 NA
#> SRR1643361     1  0.3569      0.543 0.804 0.000 0.000 NA
#> SRR1643362     1  0.3569      0.543 0.804 0.000 0.000 NA
#> SRR1643363     1  0.3569      0.543 0.804 0.000 0.000 NA
#> SRR1643364     1  0.3569      0.543 0.804 0.000 0.000 NA
#> SRR1643365     1  0.3569      0.543 0.804 0.000 0.000 NA
#> SRR1643366     1  0.3569      0.543 0.804 0.000 0.000 NA
#> SRR1643367     1  0.3569      0.543 0.804 0.000 0.000 NA
#> SRR1643368     1  0.3569      0.543 0.804 0.000 0.000 NA
#> SRR1643369     1  0.3569      0.543 0.804 0.000 0.000 NA
#> SRR1643370     1  0.3569      0.543 0.804 0.000 0.000 NA
#> SRR1643371     1  0.3569      0.543 0.804 0.000 0.000 NA
#> SRR1643372     1  0.3569      0.543 0.804 0.000 0.000 NA
#> SRR1643373     1  0.3610      0.543 0.800 0.000 0.000 NA
#> SRR1643374     1  0.3610      0.543 0.800 0.000 0.000 NA
#> SRR1643375     1  0.3610      0.543 0.800 0.000 0.000 NA
#> SRR1643376     1  0.3610      0.543 0.800 0.000 0.000 NA
#> SRR1643377     1  0.3610      0.543 0.800 0.000 0.000 NA
#> SRR1643378     1  0.3610      0.543 0.800 0.000 0.000 NA
#> SRR1643379     1  0.3610      0.543 0.800 0.000 0.000 NA
#> SRR1643380     1  0.3610      0.543 0.800 0.000 0.000 NA
#> SRR1643381     1  0.3726      0.540 0.788 0.000 0.000 NA
#> SRR1643382     1  0.3610      0.543 0.800 0.000 0.000 NA
#> SRR1643383     1  0.3610      0.543 0.800 0.000 0.000 NA
#> SRR1643384     1  0.3610      0.543 0.800 0.000 0.000 NA
#> SRR1643385     1  0.3610      0.543 0.800 0.000 0.000 NA
#> SRR1643386     1  0.3610      0.543 0.800 0.000 0.000 NA
#> SRR1643387     1  0.3610      0.543 0.800 0.000 0.000 NA
#> SRR1643388     1  0.3610      0.543 0.800 0.000 0.000 NA
#> SRR1643389     1  0.3610      0.543 0.800 0.000 0.000 NA
#> SRR1643390     1  0.7634      0.208 0.436 0.000 0.352 NA
#> SRR1643391     1  0.7634      0.208 0.436 0.000 0.352 NA
#> SRR1643392     1  0.7634      0.208 0.436 0.000 0.352 NA
#> SRR1643393     1  0.7634      0.208 0.436 0.000 0.352 NA
#> SRR1643394     1  0.7634      0.208 0.436 0.000 0.352 NA
#> SRR1643395     1  0.7634      0.208 0.436 0.000 0.352 NA
#> SRR1643396     1  0.7634      0.208 0.436 0.000 0.352 NA
#> SRR1643397     1  0.7634      0.208 0.436 0.000 0.352 NA
#> SRR1643398     1  0.7634      0.208 0.436 0.000 0.352 NA
#> SRR1643399     1  0.7634      0.208 0.436 0.000 0.352 NA
#> SRR1643400     1  0.7634      0.208 0.436 0.000 0.352 NA
#> SRR1643401     1  0.7634      0.208 0.436 0.000 0.352 NA
#> SRR1643402     1  0.7634      0.208 0.436 0.000 0.352 NA
#> SRR1643403     1  0.7634      0.208 0.436 0.000 0.352 NA
#> SRR1643404     1  0.7634      0.208 0.436 0.000 0.352 NA
#> SRR1643405     1  0.7654      0.203 0.432 0.000 0.352 NA
#> SRR1643406     1  0.7654      0.203 0.432 0.000 0.352 NA
#> SRR1643407     1  0.7654      0.203 0.432 0.000 0.352 NA
#> SRR1643408     1  0.7654      0.203 0.432 0.000 0.352 NA
#> SRR1643409     1  0.7654      0.203 0.432 0.000 0.352 NA
#> SRR1643410     1  0.7654      0.203 0.432 0.000 0.352 NA
#> SRR1643411     1  0.7654      0.203 0.432 0.000 0.352 NA
#> SRR1643412     1  0.7654      0.203 0.432 0.000 0.352 NA
#> SRR1643413     1  0.7654      0.203 0.432 0.000 0.352 NA
#> SRR1643414     1  0.7654      0.203 0.432 0.000 0.352 NA
#> SRR1643415     1  0.7654      0.203 0.432 0.000 0.352 NA
#> SRR1643416     1  0.7654      0.203 0.432 0.000 0.352 NA
#> SRR1643417     1  0.7654      0.203 0.432 0.000 0.352 NA
#> SRR1643418     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643419     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643420     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643421     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643422     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643423     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643424     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643425     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643426     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643427     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643428     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643429     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643430     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643431     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643432     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643433     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643434     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643435     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643436     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643437     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643438     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643439     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643440     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643441     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643442     1  0.4844      0.479 0.688 0.000 0.012 NA
#> SRR1643443     2  0.3542      0.866 0.000 0.852 0.028 NA
#> SRR1643444     2  0.3542      0.866 0.000 0.852 0.028 NA
#> SRR1643445     2  0.3542      0.866 0.000 0.852 0.028 NA
#> SRR1643446     2  0.3542      0.866 0.000 0.852 0.028 NA
#> SRR1643447     2  0.3542      0.866 0.000 0.852 0.028 NA
#> SRR1643448     2  0.3542      0.866 0.000 0.852 0.028 NA
#> SRR1643449     2  0.3542      0.866 0.000 0.852 0.028 NA
#> SRR1643450     2  0.3542      0.866 0.000 0.852 0.028 NA
#> SRR1643451     2  0.3542      0.866 0.000 0.852 0.028 NA
#> SRR1643452     2  0.3542      0.866 0.000 0.852 0.028 NA
#> SRR1643453     2  0.3542      0.866 0.000 0.852 0.028 NA
#> SRR1643454     2  0.3542      0.866 0.000 0.852 0.028 NA
#> SRR1643455     2  0.3542      0.866 0.000 0.852 0.028 NA
#> SRR1643456     2  0.3681      0.896 0.000 0.816 0.008 NA
#> SRR1643457     2  0.3681      0.896 0.000 0.816 0.008 NA
#> SRR1643458     2  0.3681      0.896 0.000 0.816 0.008 NA
#> SRR1643459     2  0.3681      0.896 0.000 0.816 0.008 NA
#> SRR1643460     2  0.3681      0.896 0.000 0.816 0.008 NA
#> SRR1643461     2  0.3681      0.896 0.000 0.816 0.008 NA
#> SRR1643462     2  0.3681      0.896 0.000 0.816 0.008 NA
#> SRR1643463     2  0.3681      0.896 0.000 0.816 0.008 NA
#> SRR1643464     2  0.3681      0.896 0.000 0.816 0.008 NA
#> SRR1643466     2  0.3681      0.896 0.000 0.816 0.008 NA
#> SRR1643467     2  0.3681      0.896 0.000 0.816 0.008 NA
#> SRR1643468     2  0.4136      0.892 0.000 0.788 0.016 NA
#> SRR1643469     2  0.4136      0.892 0.000 0.788 0.016 NA
#> SRR1643470     2  0.4136      0.892 0.000 0.788 0.016 NA
#> SRR1643471     2  0.4136      0.892 0.000 0.788 0.016 NA
#> SRR1643472     2  0.4136      0.892 0.000 0.788 0.016 NA
#> SRR1643473     2  0.4136      0.892 0.000 0.788 0.016 NA
#> SRR1643474     2  0.4136      0.892 0.000 0.788 0.016 NA
#> SRR1643475     2  0.4136      0.892 0.000 0.788 0.016 NA
#> SRR1643477     2  0.4136      0.892 0.000 0.788 0.016 NA
#> SRR1643478     2  0.4136      0.892 0.000 0.788 0.016 NA
#> SRR1643479     2  0.4136      0.892 0.000 0.788 0.016 NA
#> SRR1643480     2  0.4136      0.892 0.000 0.788 0.016 NA
#> SRR1643481     2  0.3672      0.897 0.000 0.824 0.012 NA
#> SRR1643482     2  0.3672      0.897 0.000 0.824 0.012 NA
#> SRR1643483     2  0.3672      0.897 0.000 0.824 0.012 NA
#> SRR1643484     2  0.3672      0.897 0.000 0.824 0.012 NA
#> SRR1643485     2  0.3672      0.897 0.000 0.824 0.012 NA
#> SRR1643486     2  0.3672      0.897 0.000 0.824 0.012 NA
#> SRR1643487     2  0.3672      0.897 0.000 0.824 0.012 NA
#> SRR1643488     2  0.3672      0.897 0.000 0.824 0.012 NA
#> SRR1643489     2  0.3672      0.897 0.000 0.824 0.012 NA
#> SRR1643490     2  0.3672      0.897 0.000 0.824 0.012 NA
#> SRR1643491     2  0.3672      0.897 0.000 0.824 0.012 NA
#> SRR1643492     2  0.3672      0.897 0.000 0.824 0.012 NA
#> SRR1643493     2  0.3672      0.897 0.000 0.824 0.012 NA
#> SRR1643494     2  0.3672      0.897 0.000 0.824 0.012 NA
#> SRR1643495     2  0.3672      0.897 0.000 0.824 0.012 NA
#> SRR1643496     2  0.3672      0.897 0.000 0.824 0.012 NA
#> SRR1643497     2  0.4761      0.888 0.000 0.768 0.048 NA
#> SRR1643498     2  0.4761      0.888 0.000 0.768 0.048 NA
#> SRR1643499     2  0.4761      0.888 0.000 0.768 0.048 NA
#> SRR1643500     2  0.4761      0.888 0.000 0.768 0.048 NA
#> SRR1643501     2  0.4761      0.888 0.000 0.768 0.048 NA
#> SRR1643502     2  0.4761      0.888 0.000 0.768 0.048 NA
#> SRR1643503     2  0.4761      0.888 0.000 0.768 0.048 NA
#> SRR1643504     2  0.4761      0.888 0.000 0.768 0.048 NA
#> SRR1643505     2  0.3778      0.882 0.000 0.848 0.052 NA
#> SRR1643506     2  0.4761      0.888 0.000 0.768 0.048 NA
#> SRR1643507     2  0.4761      0.888 0.000 0.768 0.048 NA
#> SRR1643508     2  0.4761      0.888 0.000 0.768 0.048 NA
#> SRR1643509     2  0.4761      0.888 0.000 0.768 0.048 NA
#> SRR1643510     2  0.4761      0.888 0.000 0.768 0.048 NA
#> SRR1643511     2  0.4761      0.888 0.000 0.768 0.048 NA
#> SRR1643512     2  0.4761      0.888 0.000 0.768 0.048 NA
#> SRR1643513     2  0.4761      0.888 0.000 0.768 0.048 NA
#> SRR1643531     2  0.2892      0.874 0.000 0.896 0.036 NA
#> SRR1643532     2  0.2892      0.874 0.000 0.896 0.036 NA
#> SRR1643533     2  0.2908      0.874 0.000 0.896 0.040 NA
#> SRR1643534     2  0.2892      0.874 0.000 0.896 0.036 NA
#> SRR1643535     2  0.2892      0.874 0.000 0.896 0.036 NA
#> SRR1643536     2  0.2908      0.874 0.000 0.896 0.040 NA
#> SRR1643537     2  0.2908      0.874 0.000 0.896 0.040 NA
#> SRR1643538     2  0.2908      0.874 0.000 0.896 0.040 NA
#> SRR1643539     2  0.2892      0.874 0.000 0.896 0.036 NA
#> SRR1643540     2  0.2908      0.874 0.000 0.896 0.040 NA
#> SRR1643541     2  0.2892      0.874 0.000 0.896 0.036 NA
#> SRR1643542     2  0.2892      0.874 0.000 0.896 0.036 NA
#> SRR1643543     2  0.2892      0.874 0.000 0.896 0.036 NA
#> SRR1643544     2  0.2892      0.874 0.000 0.896 0.036 NA
#> SRR1643514     2  0.0657      0.894 0.000 0.984 0.012 NA
#> SRR1643515     2  0.0657      0.894 0.000 0.984 0.012 NA
#> SRR1643516     2  0.0657      0.894 0.000 0.984 0.012 NA
#> SRR1643517     2  0.0657      0.894 0.000 0.984 0.012 NA
#> SRR1643518     2  0.0657      0.894 0.000 0.984 0.012 NA
#> SRR1643519     2  0.0657      0.894 0.000 0.984 0.012 NA
#> SRR1643520     2  0.0657      0.894 0.000 0.984 0.012 NA
#> SRR1643521     2  0.0657      0.894 0.000 0.984 0.012 NA
#> SRR1643522     2  0.0657      0.894 0.000 0.984 0.012 NA
#> SRR1643523     2  0.0657      0.894 0.000 0.984 0.012 NA
#> SRR1643524     2  0.0657      0.894 0.000 0.984 0.012 NA
#> SRR1643525     2  0.0657      0.894 0.000 0.984 0.012 NA
#> SRR1643526     2  0.0657      0.894 0.000 0.984 0.012 NA
#> SRR1643527     2  0.0657      0.894 0.000 0.984 0.012 NA
#> SRR1643528     2  0.0657      0.894 0.000 0.984 0.012 NA
#> SRR1643529     2  0.0657      0.894 0.000 0.984 0.012 NA
#> SRR1643530     2  0.0657      0.894 0.000 0.984 0.012 NA
#> SRR1643545     2  0.4057      0.896 0.000 0.812 0.028 NA
#> SRR1643546     2  0.4057      0.896 0.000 0.812 0.028 NA
#> SRR1643547     2  0.4057      0.896 0.000 0.812 0.028 NA
#> SRR1643548     2  0.4057      0.896 0.000 0.812 0.028 NA
#> SRR1643549     2  0.4057      0.896 0.000 0.812 0.028 NA
#> SRR1643550     2  0.4057      0.896 0.000 0.812 0.028 NA
#> SRR1643551     2  0.4057      0.896 0.000 0.812 0.028 NA
#> SRR1643552     2  0.4057      0.896 0.000 0.812 0.028 NA
#> SRR1643553     2  0.4057      0.896 0.000 0.812 0.028 NA
#> SRR1643554     2  0.4057      0.896 0.000 0.812 0.028 NA
#> SRR1643555     2  0.4057      0.896 0.000 0.812 0.028 NA
#> SRR1643556     2  0.4057      0.896 0.000 0.812 0.028 NA
#> SRR1643558     2  0.4057      0.896 0.000 0.812 0.028 NA
#> SRR1643559     2  0.1724      0.887 0.000 0.948 0.020 NA
#> SRR1643560     2  0.1724      0.887 0.000 0.948 0.020 NA
#> SRR1643561     2  0.1724      0.887 0.000 0.948 0.020 NA
#> SRR1643562     2  0.1724      0.887 0.000 0.948 0.020 NA
#> SRR1643563     2  0.1724      0.887 0.000 0.948 0.020 NA
#> SRR1643564     2  0.1724      0.887 0.000 0.948 0.020 NA
#> SRR1643565     2  0.1724      0.887 0.000 0.948 0.020 NA
#> SRR1643566     2  0.1724      0.887 0.000 0.948 0.020 NA
#> SRR1643567     2  0.1724      0.887 0.000 0.948 0.020 NA
#> SRR1643568     2  0.1724      0.887 0.000 0.948 0.020 NA
#> SRR1643569     2  0.1724      0.887 0.000 0.948 0.020 NA
#> SRR1643570     2  0.1724      0.887 0.000 0.948 0.020 NA
#> SRR1643571     2  0.1724      0.887 0.000 0.948 0.020 NA
#> SRR1643572     2  0.1724      0.887 0.000 0.948 0.020 NA

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1    p2    p3    p4    p5
#> SRR1643167     1  0.1507     0.7576 0.952 0.000 0.012 0.024 0.012
#> SRR1643168     1  0.1507     0.7576 0.952 0.000 0.012 0.024 0.012
#> SRR1643169     1  0.1507     0.7576 0.952 0.000 0.012 0.024 0.012
#> SRR1643170     1  0.1507     0.7576 0.952 0.000 0.012 0.024 0.012
#> SRR1643171     1  0.1419     0.7553 0.956 0.000 0.016 0.016 0.012
#> SRR1643172     1  0.1419     0.7553 0.956 0.000 0.016 0.016 0.012
#> SRR1643173     1  0.1419     0.7553 0.956 0.000 0.016 0.016 0.012
#> SRR1643174     1  0.1419     0.7553 0.956 0.000 0.016 0.016 0.012
#> SRR1643175     1  0.4661     0.6351 0.736 0.000 0.020 0.208 0.036
#> SRR1643176     1  0.4661     0.6351 0.736 0.000 0.020 0.208 0.036
#> SRR1643177     1  0.4661     0.6351 0.736 0.000 0.020 0.208 0.036
#> SRR1643178     1  0.4661     0.6351 0.736 0.000 0.020 0.208 0.036
#> SRR1643180     1  0.1518     0.7564 0.952 0.000 0.016 0.020 0.012
#> SRR1643181     1  0.1518     0.7564 0.952 0.000 0.016 0.020 0.012
#> SRR1643182     1  0.1518     0.7564 0.952 0.000 0.016 0.020 0.012
#> SRR1643183     1  0.1518     0.7564 0.952 0.000 0.016 0.020 0.012
#> SRR1643184     1  0.1518     0.7564 0.952 0.000 0.016 0.020 0.012
#> SRR1643185     1  0.1518     0.7564 0.952 0.000 0.016 0.020 0.012
#> SRR1643186     1  0.1518     0.7564 0.952 0.000 0.016 0.020 0.012
#> SRR1643187     1  0.4403     0.6654 0.772 0.000 0.024 0.168 0.036
#> SRR1643188     1  0.4403     0.6654 0.772 0.000 0.024 0.168 0.036
#> SRR1643189     1  0.4403     0.6654 0.772 0.000 0.024 0.168 0.036
#> SRR1643190     1  0.4403     0.6654 0.772 0.000 0.024 0.168 0.036
#> SRR1643191     1  0.1419     0.7553 0.956 0.000 0.016 0.016 0.012
#> SRR1643192     1  0.1419     0.7553 0.956 0.000 0.016 0.016 0.012
#> SRR1643193     1  0.4561     0.6586 0.760 0.000 0.028 0.176 0.036
#> SRR1643194     1  0.4561     0.6586 0.760 0.000 0.028 0.176 0.036
#> SRR1643195     4  0.4782     0.7625 0.236 0.000 0.008 0.708 0.048
#> SRR1643196     4  0.4782     0.7625 0.236 0.000 0.008 0.708 0.048
#> SRR1643197     1  0.1200     0.7580 0.964 0.000 0.008 0.016 0.012
#> SRR1643198     1  0.1200     0.7580 0.964 0.000 0.008 0.016 0.012
#> SRR1643199     1  0.1507     0.7576 0.952 0.000 0.012 0.024 0.012
#> SRR1643200     1  0.1507     0.7576 0.952 0.000 0.012 0.024 0.012
#> SRR1643201     1  0.5371     0.3139 0.612 0.000 0.020 0.332 0.036
#> SRR1643202     1  0.5371     0.3139 0.612 0.000 0.020 0.332 0.036
#> SRR1643203     1  0.3574     0.7344 0.840 0.000 0.020 0.108 0.032
#> SRR1643204     1  0.3574     0.7344 0.840 0.000 0.020 0.108 0.032
#> SRR1643205     3  0.4645     0.9797 0.300 0.000 0.672 0.016 0.012
#> SRR1643206     3  0.4645     0.9797 0.300 0.000 0.672 0.016 0.012
#> SRR1643207     3  0.4645     0.9797 0.300 0.000 0.672 0.016 0.012
#> SRR1643208     3  0.4645     0.9797 0.300 0.000 0.672 0.016 0.012
#> SRR1643209     3  0.4820     0.9768 0.300 0.000 0.664 0.024 0.012
#> SRR1643210     3  0.4820     0.9768 0.300 0.000 0.664 0.024 0.012
#> SRR1643211     3  0.4325     0.9803 0.300 0.000 0.684 0.012 0.004
#> SRR1643212     3  0.4325     0.9803 0.300 0.000 0.684 0.012 0.004
#> SRR1643213     3  0.4325     0.9803 0.300 0.000 0.684 0.012 0.004
#> SRR1643214     3  0.4325     0.9803 0.300 0.000 0.684 0.012 0.004
#> SRR1643215     3  0.4996     0.9753 0.300 0.000 0.656 0.028 0.016
#> SRR1643216     3  0.4996     0.9753 0.300 0.000 0.656 0.028 0.016
#> SRR1643217     3  0.4996     0.9753 0.300 0.000 0.656 0.028 0.016
#> SRR1643218     3  0.4996     0.9753 0.300 0.000 0.656 0.028 0.016
#> SRR1643219     3  0.4996     0.9753 0.300 0.000 0.656 0.028 0.016
#> SRR1643220     3  0.4996     0.9753 0.300 0.000 0.656 0.028 0.016
#> SRR1643221     3  0.4735     0.9798 0.300 0.000 0.668 0.020 0.012
#> SRR1643222     3  0.4735     0.9798 0.300 0.000 0.668 0.020 0.012
#> SRR1643223     3  0.4741     0.9794 0.300 0.000 0.668 0.016 0.016
#> SRR1643224     3  0.4741     0.9794 0.300 0.000 0.668 0.016 0.016
#> SRR1643225     3  0.4741     0.9794 0.300 0.000 0.668 0.016 0.016
#> SRR1643226     3  0.4741     0.9794 0.300 0.000 0.668 0.016 0.016
#> SRR1643227     3  0.4741     0.9794 0.300 0.000 0.668 0.016 0.016
#> SRR1643228     3  0.4741     0.9794 0.300 0.000 0.668 0.016 0.016
#> SRR1643229     3  0.4741     0.9794 0.300 0.000 0.668 0.016 0.016
#> SRR1643230     3  0.4645     0.9797 0.300 0.000 0.672 0.016 0.012
#> SRR1643231     3  0.4741     0.9793 0.300 0.000 0.668 0.016 0.016
#> SRR1643232     3  0.4645     0.9797 0.300 0.000 0.672 0.016 0.012
#> SRR1643233     3  0.4996     0.9753 0.300 0.000 0.656 0.028 0.016
#> SRR1643234     3  0.4996     0.9753 0.300 0.000 0.656 0.028 0.016
#> SRR1643235     3  0.4735     0.9798 0.300 0.000 0.668 0.020 0.012
#> SRR1643236     3  0.4735     0.9798 0.300 0.000 0.668 0.020 0.012
#> SRR1643237     3  0.4735     0.9798 0.300 0.000 0.668 0.020 0.012
#> SRR1643238     3  0.4360     0.9801 0.300 0.000 0.680 0.020 0.000
#> SRR1643239     3  0.4360     0.9801 0.300 0.000 0.680 0.020 0.000
#> SRR1643240     3  0.4360     0.9801 0.300 0.000 0.680 0.020 0.000
#> SRR1643241     3  0.4360     0.9801 0.300 0.000 0.680 0.020 0.000
#> SRR1643242     3  0.5306     0.9683 0.296 0.000 0.644 0.032 0.028
#> SRR1643243     3  0.5150     0.9704 0.296 0.000 0.652 0.028 0.024
#> SRR1643245     3  0.5150     0.9704 0.296 0.000 0.652 0.028 0.024
#> SRR1643246     3  0.5150     0.9704 0.296 0.000 0.652 0.028 0.024
#> SRR1643247     3  0.5150     0.9704 0.296 0.000 0.652 0.028 0.024
#> SRR1643248     3  0.4735     0.9798 0.300 0.000 0.668 0.020 0.012
#> SRR1643249     3  0.5557     0.7512 0.436 0.000 0.512 0.028 0.024
#> SRR1643250     4  0.4424     0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643251     4  0.4424     0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643252     4  0.4424     0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643253     4  0.4424     0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643254     4  0.4424     0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643255     4  0.4424     0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643256     4  0.4424     0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643257     4  0.4424     0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643258     4  0.4424     0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643259     4  0.4424     0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643260     4  0.4424     0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643261     4  0.4424     0.7888 0.212 0.000 0.012 0.744 0.032
#> SRR1643262     4  0.4281     0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643263     4  0.4281     0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643264     4  0.4281     0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643266     4  0.4281     0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643267     4  0.4281     0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643268     4  0.4281     0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643269     4  0.4281     0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643270     4  0.4281     0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643271     4  0.4281     0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643272     4  0.4281     0.7954 0.204 0.000 0.012 0.756 0.028
#> SRR1643273     1  0.6234    -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643274     1  0.6234    -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643275     1  0.6234    -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643276     1  0.6234    -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643277     1  0.6234    -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643278     1  0.6234    -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643279     1  0.6234    -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643280     1  0.6234    -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643281     1  0.6234    -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643282     1  0.6234    -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643283     1  0.6234    -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643284     1  0.6234    -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643285     1  0.6234    -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643286     1  0.6234    -0.1027 0.480 0.000 0.016 0.412 0.092
#> SRR1643287     4  0.6216     0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643288     4  0.6216     0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643289     4  0.6216     0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643290     4  0.6216     0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643291     4  0.6216     0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643292     4  0.6216     0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643293     4  0.6216     0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643294     4  0.6216     0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643295     4  0.6216     0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643296     4  0.6216     0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643297     4  0.6216     0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643298     4  0.6216     0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643299     4  0.6216     0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643300     4  0.6216     0.7321 0.160 0.000 0.036 0.636 0.168
#> SRR1643301     4  0.5313     0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643302     4  0.5313     0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643303     4  0.5313     0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643304     4  0.5313     0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643305     4  0.5315     0.3301 0.456 0.000 0.004 0.500 0.040
#> SRR1643306     4  0.5313     0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643307     4  0.5313     0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643308     4  0.5313     0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643309     4  0.5313     0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643310     4  0.5313     0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643311     4  0.5313     0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643312     4  0.5313     0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643313     4  0.5313     0.3439 0.452 0.000 0.004 0.504 0.040
#> SRR1643314     1  0.3732     0.6837 0.792 0.000 0.000 0.176 0.032
#> SRR1643315     1  0.3769     0.6806 0.788 0.000 0.000 0.180 0.032
#> SRR1643316     1  0.3805     0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643317     1  0.3805     0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643318     1  0.3805     0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643319     1  0.3876     0.6662 0.776 0.000 0.000 0.192 0.032
#> SRR1643320     1  0.3805     0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643321     1  0.3805     0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643322     1  0.3805     0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643323     1  0.3805     0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643324     1  0.3841     0.6720 0.780 0.000 0.000 0.188 0.032
#> SRR1643325     1  0.3805     0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643326     1  0.3805     0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643327     1  0.3805     0.6775 0.784 0.000 0.000 0.184 0.032
#> SRR1643328     1  0.1209     0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643329     1  0.1209     0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643330     1  0.1209     0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643331     1  0.1209     0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643332     1  0.1209     0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643333     1  0.1209     0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643334     1  0.1314     0.7546 0.960 0.000 0.016 0.012 0.012
#> SRR1643335     1  0.1209     0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643336     1  0.1209     0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643337     1  0.1209     0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643338     1  0.1209     0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643339     1  0.1209     0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643340     1  0.1209     0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643341     1  0.1209     0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643342     1  0.1209     0.7512 0.964 0.000 0.012 0.012 0.012
#> SRR1643343     1  0.6170     0.5998 0.652 0.000 0.048 0.160 0.140
#> SRR1643344     1  0.6170     0.5998 0.652 0.000 0.048 0.160 0.140
#> SRR1643345     1  0.6170     0.5998 0.652 0.000 0.048 0.160 0.140
#> SRR1643346     1  0.6196     0.5998 0.652 0.000 0.052 0.160 0.136
#> SRR1643347     1  0.6196     0.5998 0.652 0.000 0.052 0.160 0.136
#> SRR1643348     1  0.6170     0.5998 0.652 0.000 0.048 0.160 0.140
#> SRR1643349     1  0.6196     0.5998 0.652 0.000 0.052 0.160 0.136
#> SRR1643350     1  0.6196     0.5998 0.652 0.000 0.052 0.160 0.136
#> SRR1643351     1  0.6196     0.5998 0.652 0.000 0.052 0.160 0.136
#> SRR1643352     1  0.6196     0.5998 0.652 0.000 0.052 0.160 0.136
#> SRR1643353     1  0.6170     0.5998 0.652 0.000 0.048 0.160 0.140
#> SRR1643354     1  0.6170     0.5998 0.652 0.000 0.048 0.160 0.140
#> SRR1643355     1  0.6196     0.5998 0.652 0.000 0.052 0.160 0.136
#> SRR1643356     1  0.6170     0.5998 0.652 0.000 0.048 0.160 0.140
#> SRR1643357     1  0.6170     0.5998 0.652 0.000 0.048 0.160 0.140
#> SRR1643358     4  0.3778     0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643359     4  0.3778     0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643360     4  0.3778     0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643361     4  0.3778     0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643362     4  0.3778     0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643363     4  0.3778     0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643364     4  0.3778     0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643365     4  0.3778     0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643366     4  0.3778     0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643367     4  0.3778     0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643368     4  0.3778     0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643369     4  0.3778     0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643370     4  0.3778     0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643371     4  0.3778     0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643372     4  0.3778     0.8070 0.188 0.000 0.012 0.788 0.012
#> SRR1643373     4  0.3806     0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643374     4  0.3806     0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643375     4  0.3806     0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643376     4  0.3806     0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643377     4  0.3806     0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643378     4  0.3806     0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643379     4  0.3806     0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643380     4  0.3806     0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643381     4  0.4037     0.8065 0.184 0.000 0.020 0.780 0.016
#> SRR1643382     4  0.3806     0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643383     4  0.3806     0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643384     4  0.3806     0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643385     4  0.3806     0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643386     4  0.3806     0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643387     4  0.3806     0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643388     4  0.3806     0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643389     4  0.3806     0.8070 0.180 0.000 0.012 0.792 0.016
#> SRR1643390     1  0.1106     0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643391     1  0.1106     0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643392     1  0.1106     0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643393     1  0.1106     0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643394     1  0.1106     0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643395     1  0.1106     0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643396     1  0.1106     0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643397     1  0.1106     0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643398     1  0.1106     0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643399     1  0.1106     0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643400     1  0.1106     0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643401     1  0.1106     0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643402     1  0.1106     0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643403     1  0.1106     0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643404     1  0.1106     0.7440 0.964 0.000 0.012 0.000 0.024
#> SRR1643405     1  0.1267     0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643406     1  0.1267     0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643407     1  0.1267     0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643408     1  0.1267     0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643409     1  0.1267     0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643410     1  0.1267     0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643411     1  0.1267     0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643412     1  0.1267     0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643413     1  0.1267     0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643414     1  0.1267     0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643415     1  0.1267     0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643416     1  0.1267     0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643417     1  0.1267     0.7415 0.960 0.000 0.012 0.004 0.024
#> SRR1643418     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643419     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643420     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643421     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643422     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643423     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643424     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643425     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643426     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643427     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643428     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643429     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643430     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643431     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643432     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643433     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643434     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643435     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643436     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643437     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643438     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643439     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643440     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643441     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643442     4  0.5828     0.7270 0.120 0.000 0.044 0.684 0.152
#> SRR1643443     5  0.4968     1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643444     5  0.4968     1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643445     5  0.4968     1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643446     5  0.4968     1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643447     5  0.4968     1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643448     5  0.4968     1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643449     5  0.4968     1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643450     5  0.4968     1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643451     5  0.4968     1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643452     5  0.4968     1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643453     5  0.4968     1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643454     5  0.4968     1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643455     5  0.4968     1.0000 0.000 0.456 0.028 0.000 0.516
#> SRR1643456     2  0.0404     0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643457     2  0.0404     0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643458     2  0.0404     0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643459     2  0.0404     0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643460     2  0.0404     0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643461     2  0.0404     0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643462     2  0.0404     0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643463     2  0.0404     0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643464     2  0.0404     0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643466     2  0.0404     0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643467     2  0.0404     0.5642 0.000 0.988 0.000 0.000 0.012
#> SRR1643468     2  0.1569     0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643469     2  0.1569     0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643470     2  0.1569     0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643471     2  0.1569     0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643472     2  0.1569     0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643473     2  0.1569     0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643474     2  0.1569     0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643475     2  0.1569     0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643477     2  0.1569     0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643478     2  0.1569     0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643479     2  0.1569     0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643480     2  0.1569     0.5451 0.000 0.948 0.008 0.012 0.032
#> SRR1643481     2  0.0609     0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643482     2  0.0609     0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643483     2  0.0609     0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643484     2  0.0609     0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643485     2  0.0609     0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643486     2  0.0609     0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643487     2  0.0609     0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643488     2  0.0609     0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643489     2  0.0609     0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643490     2  0.0609     0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643491     2  0.0609     0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643492     2  0.0609     0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643493     2  0.0609     0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643494     2  0.0609     0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643495     2  0.0609     0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643496     2  0.0609     0.5674 0.000 0.980 0.020 0.000 0.000
#> SRR1643497     2  0.5354     0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643498     2  0.5354     0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643499     2  0.5354     0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643500     2  0.5354     0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643501     2  0.5354     0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643502     2  0.5354     0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643503     2  0.5354     0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643504     2  0.5354     0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643505     2  0.5684    -0.5162 0.000 0.564 0.048 0.020 0.368
#> SRR1643506     2  0.5354     0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643507     2  0.5354     0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643508     2  0.5354     0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643509     2  0.5354     0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643510     2  0.5354     0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643511     2  0.5354     0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643512     2  0.5354     0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643513     2  0.5354     0.1599 0.000 0.696 0.068 0.028 0.208
#> SRR1643531     2  0.4664    -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643532     2  0.4664    -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643533     2  0.4664    -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643534     2  0.4664    -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643535     2  0.4664    -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643536     2  0.4664    -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643537     2  0.4664    -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643538     2  0.4664    -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643539     2  0.4664    -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643540     2  0.4664    -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643541     2  0.4664    -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643542     2  0.4664    -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643543     2  0.4664    -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643544     2  0.4664    -0.5295 0.000 0.552 0.004 0.008 0.436
#> SRR1643514     2  0.5153     0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643515     2  0.5153     0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643516     2  0.5153     0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643517     2  0.5153     0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643518     2  0.5153     0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643519     2  0.5153     0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643520     2  0.5153     0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643521     2  0.5153     0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643522     2  0.5153     0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643523     2  0.5153     0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643524     2  0.5153     0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643525     2  0.5153     0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643526     2  0.5153     0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643527     2  0.5153     0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643528     2  0.5153     0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643529     2  0.5153     0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643530     2  0.5153     0.1026 0.000 0.680 0.040 0.024 0.256
#> SRR1643545     2  0.1329     0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643546     2  0.1329     0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643547     2  0.1329     0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643548     2  0.1329     0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643549     2  0.1329     0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643550     2  0.1329     0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643551     2  0.1329     0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643552     2  0.1329     0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643553     2  0.1329     0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643554     2  0.1329     0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643555     2  0.1329     0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643556     2  0.1329     0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643558     2  0.1329     0.5617 0.000 0.956 0.032 0.004 0.008
#> SRR1643559     2  0.4726    -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643560     2  0.4726    -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643561     2  0.4726    -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643562     2  0.4726    -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643563     2  0.4726    -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643564     2  0.4726    -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643565     2  0.4726    -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643566     2  0.4726    -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643567     2  0.4726    -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643568     2  0.4726    -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643569     2  0.4726    -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643570     2  0.4726    -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643571     2  0.4726    -0.0934 0.000 0.644 0.024 0.004 0.328
#> SRR1643572     2  0.4726    -0.0934 0.000 0.644 0.024 0.004 0.328

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2    p3    p4    p5 p6
#> SRR1643167     1  0.2842     0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643168     1  0.2842     0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643169     1  0.2842     0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643170     1  0.2842     0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643171     1  0.2693     0.7305 0.888 0.000 0.004 0.024 0.048 NA
#> SRR1643172     1  0.2693     0.7305 0.888 0.000 0.004 0.024 0.048 NA
#> SRR1643173     1  0.2693     0.7305 0.888 0.000 0.004 0.024 0.048 NA
#> SRR1643174     1  0.2693     0.7305 0.888 0.000 0.004 0.024 0.048 NA
#> SRR1643175     1  0.5192     0.6214 0.688 0.000 0.004 0.184 0.044 NA
#> SRR1643176     1  0.5192     0.6214 0.688 0.000 0.004 0.184 0.044 NA
#> SRR1643177     1  0.5240     0.6169 0.684 0.000 0.004 0.184 0.044 NA
#> SRR1643178     1  0.5192     0.6214 0.688 0.000 0.004 0.184 0.044 NA
#> SRR1643180     1  0.2842     0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643181     1  0.2842     0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643182     1  0.2842     0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643183     1  0.2842     0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643184     1  0.2842     0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643185     1  0.2842     0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643186     1  0.2842     0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643187     1  0.4167     0.7061 0.788 0.000 0.000 0.084 0.056 NA
#> SRR1643188     1  0.4167     0.7061 0.788 0.000 0.000 0.084 0.056 NA
#> SRR1643189     1  0.4167     0.7061 0.788 0.000 0.000 0.084 0.056 NA
#> SRR1643190     1  0.4167     0.7061 0.788 0.000 0.000 0.084 0.056 NA
#> SRR1643191     1  0.2523     0.7328 0.896 0.000 0.004 0.016 0.048 NA
#> SRR1643192     1  0.2523     0.7328 0.896 0.000 0.004 0.016 0.048 NA
#> SRR1643193     1  0.4071     0.6898 0.792 0.000 0.000 0.100 0.048 NA
#> SRR1643194     1  0.4071     0.6898 0.792 0.000 0.000 0.100 0.048 NA
#> SRR1643195     4  0.5352     0.6168 0.232 0.000 0.004 0.644 0.024 NA
#> SRR1643196     4  0.5352     0.6168 0.232 0.000 0.004 0.644 0.024 NA
#> SRR1643197     1  0.2554     0.7349 0.896 0.000 0.004 0.024 0.044 NA
#> SRR1643198     1  0.2554     0.7349 0.896 0.000 0.004 0.024 0.044 NA
#> SRR1643199     1  0.2842     0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643200     1  0.2842     0.7289 0.880 0.000 0.004 0.028 0.048 NA
#> SRR1643201     1  0.5568     0.5504 0.660 0.000 0.008 0.196 0.064 NA
#> SRR1643202     1  0.5568     0.5504 0.660 0.000 0.008 0.196 0.064 NA
#> SRR1643203     1  0.3463     0.7137 0.836 0.000 0.000 0.076 0.044 NA
#> SRR1643204     1  0.3463     0.7137 0.836 0.000 0.000 0.076 0.044 NA
#> SRR1643205     3  0.2926     0.9678 0.132 0.000 0.844 0.012 0.008 NA
#> SRR1643206     3  0.2926     0.9678 0.132 0.000 0.844 0.012 0.008 NA
#> SRR1643207     3  0.2926     0.9678 0.132 0.000 0.844 0.012 0.008 NA
#> SRR1643208     3  0.2926     0.9678 0.132 0.000 0.844 0.012 0.008 NA
#> SRR1643209     3  0.3569     0.9679 0.132 0.000 0.816 0.012 0.012 NA
#> SRR1643210     3  0.3569     0.9679 0.132 0.000 0.816 0.012 0.012 NA
#> SRR1643211     3  0.3037     0.9702 0.132 0.000 0.840 0.008 0.012 NA
#> SRR1643212     3  0.3037     0.9702 0.132 0.000 0.840 0.008 0.012 NA
#> SRR1643213     3  0.3037     0.9702 0.132 0.000 0.840 0.008 0.012 NA
#> SRR1643214     3  0.3037     0.9702 0.132 0.000 0.840 0.008 0.012 NA
#> SRR1643215     3  0.3859     0.9638 0.132 0.000 0.800 0.008 0.020 NA
#> SRR1643216     3  0.3859     0.9638 0.132 0.000 0.800 0.008 0.020 NA
#> SRR1643217     3  0.3859     0.9638 0.132 0.000 0.800 0.008 0.020 NA
#> SRR1643218     3  0.3859     0.9638 0.132 0.000 0.800 0.008 0.020 NA
#> SRR1643219     3  0.3859     0.9638 0.132 0.000 0.800 0.008 0.020 NA
#> SRR1643220     3  0.3859     0.9638 0.132 0.000 0.800 0.008 0.020 NA
#> SRR1643221     3  0.3318     0.9682 0.132 0.000 0.828 0.008 0.016 NA
#> SRR1643222     3  0.3318     0.9682 0.132 0.000 0.828 0.008 0.016 NA
#> SRR1643223     3  0.3017     0.9677 0.132 0.000 0.840 0.016 0.008 NA
#> SRR1643224     3  0.3017     0.9677 0.132 0.000 0.840 0.016 0.008 NA
#> SRR1643225     3  0.3017     0.9677 0.132 0.000 0.840 0.016 0.008 NA
#> SRR1643226     3  0.3017     0.9677 0.132 0.000 0.840 0.016 0.008 NA
#> SRR1643227     3  0.3017     0.9677 0.132 0.000 0.840 0.016 0.008 NA
#> SRR1643228     3  0.3017     0.9677 0.132 0.000 0.840 0.016 0.008 NA
#> SRR1643229     3  0.3017     0.9677 0.132 0.000 0.840 0.016 0.008 NA
#> SRR1643230     3  0.3017     0.9677 0.132 0.000 0.840 0.016 0.008 NA
#> SRR1643231     3  0.3116     0.9670 0.132 0.000 0.836 0.016 0.012 NA
#> SRR1643232     3  0.2926     0.9678 0.132 0.000 0.844 0.012 0.008 NA
#> SRR1643233     3  0.3706     0.9654 0.132 0.000 0.808 0.008 0.016 NA
#> SRR1643234     3  0.3706     0.9654 0.132 0.000 0.808 0.008 0.016 NA
#> SRR1643235     3  0.3227     0.9685 0.132 0.000 0.832 0.008 0.012 NA
#> SRR1643236     3  0.3404     0.9688 0.132 0.000 0.824 0.008 0.016 NA
#> SRR1643237     3  0.3404     0.9688 0.132 0.000 0.824 0.008 0.016 NA
#> SRR1643238     3  0.3691     0.9656 0.132 0.000 0.808 0.004 0.024 NA
#> SRR1643239     3  0.3691     0.9656 0.132 0.000 0.808 0.004 0.024 NA
#> SRR1643240     3  0.3691     0.9656 0.132 0.000 0.808 0.004 0.024 NA
#> SRR1643241     3  0.3691     0.9656 0.132 0.000 0.808 0.004 0.024 NA
#> SRR1643242     3  0.3647     0.9650 0.132 0.000 0.812 0.008 0.020 NA
#> SRR1643243     3  0.3561     0.9658 0.132 0.000 0.816 0.008 0.016 NA
#> SRR1643245     3  0.3561     0.9658 0.132 0.000 0.816 0.008 0.016 NA
#> SRR1643246     3  0.3561     0.9658 0.132 0.000 0.816 0.008 0.016 NA
#> SRR1643247     3  0.3561     0.9658 0.132 0.000 0.816 0.008 0.016 NA
#> SRR1643248     3  0.2716     0.9688 0.132 0.000 0.852 0.008 0.004 NA
#> SRR1643249     3  0.5610     0.6763 0.308 0.000 0.588 0.008 0.048 NA
#> SRR1643250     4  0.4649     0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643251     4  0.4649     0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643252     4  0.4649     0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643253     4  0.4649     0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643254     4  0.4649     0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643255     4  0.4649     0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643256     4  0.4649     0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643257     4  0.4649     0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643258     4  0.4649     0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643259     4  0.4649     0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643260     4  0.4649     0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643261     4  0.4649     0.7009 0.164 0.000 0.008 0.736 0.024 NA
#> SRR1643262     4  0.4510     0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643263     4  0.4510     0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643264     4  0.4510     0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643266     4  0.4510     0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643267     4  0.4510     0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643268     4  0.4510     0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643269     4  0.4510     0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643270     4  0.4510     0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643271     4  0.4510     0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643272     4  0.4510     0.7116 0.148 0.000 0.008 0.752 0.024 NA
#> SRR1643273     1  0.6319    -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643274     1  0.6319    -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643275     1  0.6319    -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643276     1  0.6322    -0.0485 0.396 0.000 0.000 0.344 0.012 NA
#> SRR1643277     1  0.6319    -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643278     1  0.6319    -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643279     1  0.6319    -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643280     1  0.6319    -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643281     1  0.6319    -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643282     1  0.6319    -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643283     1  0.6319    -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643284     1  0.6319    -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643285     1  0.6319    -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643286     1  0.6319    -0.0298 0.400 0.000 0.000 0.340 0.012 NA
#> SRR1643287     4  0.5330     0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643288     4  0.5330     0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643289     4  0.5330     0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643290     4  0.5330     0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643291     4  0.5330     0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643292     4  0.5330     0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643293     4  0.5330     0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643294     4  0.5330     0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643295     4  0.5330     0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643296     4  0.5330     0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643297     4  0.5330     0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643298     4  0.5330     0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643299     4  0.5330     0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643300     4  0.5330     0.5922 0.108 0.000 0.000 0.496 0.000 NA
#> SRR1643301     4  0.5735     0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643302     4  0.5735     0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643303     4  0.5735     0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643304     4  0.5735     0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643305     4  0.5735     0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643306     4  0.5735     0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643307     4  0.5735     0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643308     4  0.5735     0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643309     4  0.5735     0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643310     4  0.5735     0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643311     4  0.5735     0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643312     4  0.5735     0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643313     4  0.5735     0.2337 0.424 0.000 0.004 0.468 0.020 NA
#> SRR1643314     1  0.4350     0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643315     1  0.4350     0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643316     1  0.4350     0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643317     1  0.4350     0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643318     1  0.4350     0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643319     1  0.4350     0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643320     1  0.4350     0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643321     1  0.4350     0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643322     1  0.4350     0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643323     1  0.4350     0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643324     1  0.4350     0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643325     1  0.4350     0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643326     1  0.4350     0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643327     1  0.4350     0.6309 0.752 0.000 0.004 0.168 0.024 NA
#> SRR1643328     1  0.2384     0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643329     1  0.2384     0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643330     1  0.2384     0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643331     1  0.2384     0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643332     1  0.2384     0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643333     1  0.2384     0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643334     1  0.2051     0.7453 0.924 0.000 0.012 0.012 0.020 NA
#> SRR1643335     1  0.2384     0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643336     1  0.2384     0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643337     1  0.2384     0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643338     1  0.2384     0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643339     1  0.2384     0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643340     1  0.2384     0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643341     1  0.2384     0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643342     1  0.2384     0.7435 0.908 0.000 0.032 0.012 0.016 NA
#> SRR1643343     1  0.6656     0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643344     1  0.6656     0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643345     1  0.6656     0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643346     1  0.6656     0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643347     1  0.6656     0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643348     1  0.6656     0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643349     1  0.6656     0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643350     1  0.6656     0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643351     1  0.6656     0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643352     1  0.6656     0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643353     1  0.6656     0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643354     1  0.6656     0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643355     1  0.6656     0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643356     1  0.6656     0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643357     1  0.6656     0.5480 0.552 0.000 0.020 0.140 0.064 NA
#> SRR1643358     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643359     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643360     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643361     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643362     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643363     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643364     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643365     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643366     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643367     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643368     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643369     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643370     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643371     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643372     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643373     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643374     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643375     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643376     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643377     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643378     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643379     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643380     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643381     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643382     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643383     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643384     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643385     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643386     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643387     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643388     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643389     4  0.3333     0.7310 0.128 0.000 0.004 0.828 0.024 NA
#> SRR1643390     1  0.3134     0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643391     1  0.3134     0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643392     1  0.3134     0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643393     1  0.3134     0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643394     1  0.3134     0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643395     1  0.3134     0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643396     1  0.3134     0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643397     1  0.3134     0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643398     1  0.3134     0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643399     1  0.3134     0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643400     1  0.3134     0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643401     1  0.3134     0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643402     1  0.3134     0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643403     1  0.3134     0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643404     1  0.3134     0.7267 0.860 0.000 0.032 0.004 0.072 NA
#> SRR1643405     1  0.3741     0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643406     1  0.3741     0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643407     1  0.3741     0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643408     1  0.3741     0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643409     1  0.3741     0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643410     1  0.3741     0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643411     1  0.3741     0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643412     1  0.3741     0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643413     1  0.3741     0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643414     1  0.3741     0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643415     1  0.3741     0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643416     1  0.3741     0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643417     1  0.3741     0.7174 0.820 0.000 0.032 0.004 0.088 NA
#> SRR1643418     4  0.5859     0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643419     4  0.5859     0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643420     4  0.5859     0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643421     4  0.5859     0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643422     4  0.5859     0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643423     4  0.5859     0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643424     4  0.5859     0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643425     4  0.5859     0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643426     4  0.5859     0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643427     4  0.5859     0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643428     4  0.5859     0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643429     4  0.5859     0.6406 0.064 0.000 0.012 0.624 0.072 NA
#> SRR1643430     4  0.5762     0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643431     4  0.5762     0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643432     4  0.5762     0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643433     4  0.5762     0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643434     4  0.5762     0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643435     4  0.5762     0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643436     4  0.5762     0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643437     4  0.5762     0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643438     4  0.5762     0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643439     4  0.5762     0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643440     4  0.5762     0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643441     4  0.5762     0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643442     4  0.5762     0.6406 0.064 0.000 0.008 0.624 0.068 NA
#> SRR1643443     5  0.5928     0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643444     5  0.5928     0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643445     5  0.5928     0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643446     5  0.5928     0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643447     5  0.5928     0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643448     5  0.5928     0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643449     5  0.5928     0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643450     5  0.5928     0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643451     5  0.5928     0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643452     5  0.5928     0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643453     5  0.5928     0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643454     5  0.5928     0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643455     5  0.5928     0.7755 0.000 0.408 0.024 0.008 0.472 NA
#> SRR1643456     2  0.1785     0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643457     2  0.1785     0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643458     2  0.1785     0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643459     2  0.1785     0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643460     2  0.1785     0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643461     2  0.1785     0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643462     2  0.1785     0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643463     2  0.1785     0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643464     2  0.1785     0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643466     2  0.1785     0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643467     2  0.1785     0.5788 0.000 0.936 0.016 0.008 0.028 NA
#> SRR1643468     2  0.1774     0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643469     2  0.1774     0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643470     2  0.1774     0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643471     2  0.1774     0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643472     2  0.1774     0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643473     2  0.1774     0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643474     2  0.1774     0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643475     2  0.1774     0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643477     2  0.1774     0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643478     2  0.1774     0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643479     2  0.1774     0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643480     2  0.1774     0.5748 0.000 0.936 0.020 0.004 0.024 NA
#> SRR1643481     2  0.0951     0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643482     2  0.0951     0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643483     2  0.0951     0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643484     2  0.0951     0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643485     2  0.0951     0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643486     2  0.0951     0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643487     2  0.0951     0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643488     2  0.0951     0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643489     2  0.0951     0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643490     2  0.0951     0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643491     2  0.0951     0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643492     2  0.0951     0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643493     2  0.0951     0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643494     2  0.0951     0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643495     2  0.0951     0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643496     2  0.0951     0.5839 0.000 0.968 0.008 0.000 0.004 NA
#> SRR1643497     2  0.5176     0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643498     2  0.5176     0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643499     2  0.5176     0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643500     2  0.5176     0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643501     2  0.5176     0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643502     2  0.5176     0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643503     2  0.5176     0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643504     2  0.5176     0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643505     2  0.6143    -0.4181 0.000 0.508 0.020 0.016 0.344 NA
#> SRR1643506     2  0.5176     0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643507     2  0.5176     0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643508     2  0.5176     0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643509     2  0.5176     0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643510     2  0.5176     0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643511     2  0.5176     0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643512     2  0.5176     0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643513     2  0.5176     0.2600 0.000 0.668 0.020 0.000 0.156 NA
#> SRR1643531     5  0.4908     0.7777 0.000 0.468 0.036 0.000 0.484 NA
#> SRR1643532     5  0.4964     0.7772 0.000 0.468 0.040 0.000 0.480 NA
#> SRR1643533     5  0.4908     0.7777 0.000 0.468 0.036 0.000 0.484 NA
#> SRR1643534     5  0.4964     0.7772 0.000 0.468 0.040 0.000 0.480 NA
#> SRR1643535     5  0.4908     0.7777 0.000 0.468 0.036 0.000 0.484 NA
#> SRR1643536     5  0.4964     0.7772 0.000 0.468 0.040 0.000 0.480 NA
#> SRR1643537     5  0.4908     0.7777 0.000 0.468 0.036 0.000 0.484 NA
#> SRR1643538     5  0.4964     0.7772 0.000 0.468 0.040 0.000 0.480 NA
#> SRR1643539     5  0.4908     0.7777 0.000 0.468 0.036 0.000 0.484 NA
#> SRR1643540     5  0.4964     0.7772 0.000 0.468 0.040 0.000 0.480 NA
#> SRR1643541     5  0.4908     0.7777 0.000 0.468 0.036 0.000 0.484 NA
#> SRR1643542     5  0.4908     0.7777 0.000 0.468 0.036 0.000 0.484 NA
#> SRR1643543     5  0.4908     0.7777 0.000 0.468 0.036 0.000 0.484 NA
#> SRR1643544     5  0.4908     0.7777 0.000 0.468 0.036 0.000 0.484 NA
#> SRR1643514     2  0.3852    -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643515     2  0.3852    -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643516     2  0.3852    -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643517     2  0.3852    -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643518     2  0.3852    -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643519     2  0.3852    -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643520     2  0.3852    -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643521     2  0.3852    -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643522     2  0.3852    -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643523     2  0.3852    -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643524     2  0.3852    -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643525     2  0.3852    -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643526     2  0.3852    -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643527     2  0.3852    -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643528     2  0.3852    -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643529     2  0.3852    -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643530     2  0.3852    -0.2760 0.000 0.612 0.000 0.004 0.384 NA
#> SRR1643545     2  0.1821     0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643546     2  0.1821     0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643547     2  0.1821     0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643548     2  0.1821     0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643549     2  0.1821     0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643550     2  0.1821     0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643551     2  0.1821     0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643552     2  0.1821     0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643553     2  0.1821     0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643554     2  0.1821     0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643555     2  0.1821     0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643556     2  0.1821     0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643558     2  0.1821     0.5676 0.000 0.928 0.008 0.000 0.040 NA
#> SRR1643559     2  0.4086    -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643560     2  0.4086    -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643561     2  0.4086    -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643562     2  0.4086    -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643563     2  0.4086    -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643564     2  0.4086    -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643565     2  0.4086    -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643566     2  0.4086    -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643567     2  0.4086    -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643568     2  0.4086    -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643569     2  0.4086    -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643570     2  0.4086    -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643571     2  0.4086    -0.5129 0.000 0.528 0.000 0.008 0.464 NA
#> SRR1643572     2  0.4086    -0.5129 0.000 0.528 0.000 0.008 0.464 NA

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-CV-kmeans-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-CV-kmeans-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-CV-kmeans-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-CV-kmeans-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-CV-kmeans-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-CV-kmeans-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-CV-kmeans-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-CV-kmeans-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-CV-kmeans-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-CV-kmeans-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-CV-kmeans-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-CV-kmeans-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-CV-kmeans-get-signatures-3

get_signatures(res, k = 5)

plot of chunk tab-CV-kmeans-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-CV-kmeans-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-CV-kmeans-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-CV-kmeans-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-CV-kmeans-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)

plot of chunk tab-CV-kmeans-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-CV-kmeans-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk CV-kmeans-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-CV-kmeans-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-CV-kmeans-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-CV-kmeans-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-CV-kmeans-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-CV-kmeans-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk CV-kmeans-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


CV:skmeans*

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["CV", "skmeans"]
# you can also extract it by
# res = res_list["CV:skmeans"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'CV' method.
#>   Subgroups are detected by 'skmeans' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 4.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk CV-skmeans-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk CV-skmeans-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000         0.4350 0.566   0.566
#> 3 3 0.779           0.946       0.941         0.4838 0.768   0.591
#> 4 4 0.931           0.926       0.949         0.1185 0.869   0.649
#> 5 5 0.849           0.812       0.851         0.0559 0.965   0.881
#> 6 6 0.795           0.676       0.758         0.0399 0.909   0.677

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 4
#> attr(,"optional")
#> [1] 2

There is also optional best \(k\) = 2 that is worth to check.

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1 p2    p3
#> SRR1643167     3  0.4399      0.905 0.188  0 0.812
#> SRR1643168     3  0.4399      0.905 0.188  0 0.812
#> SRR1643169     3  0.4399      0.905 0.188  0 0.812
#> SRR1643170     3  0.4399      0.905 0.188  0 0.812
#> SRR1643171     3  0.4399      0.905 0.188  0 0.812
#> SRR1643172     3  0.4399      0.905 0.188  0 0.812
#> SRR1643173     3  0.4399      0.905 0.188  0 0.812
#> SRR1643174     3  0.4399      0.905 0.188  0 0.812
#> SRR1643175     3  0.5291      0.850 0.268  0 0.732
#> SRR1643176     3  0.5291      0.850 0.268  0 0.732
#> SRR1643177     3  0.5291      0.850 0.268  0 0.732
#> SRR1643178     3  0.5291      0.850 0.268  0 0.732
#> SRR1643180     3  0.4399      0.905 0.188  0 0.812
#> SRR1643181     3  0.4399      0.905 0.188  0 0.812
#> SRR1643182     3  0.4399      0.905 0.188  0 0.812
#> SRR1643183     3  0.4399      0.905 0.188  0 0.812
#> SRR1643184     3  0.4399      0.905 0.188  0 0.812
#> SRR1643185     3  0.4399      0.905 0.188  0 0.812
#> SRR1643186     3  0.4399      0.905 0.188  0 0.812
#> SRR1643187     3  0.5178      0.864 0.256  0 0.744
#> SRR1643188     3  0.5178      0.864 0.256  0 0.744
#> SRR1643189     3  0.5178      0.864 0.256  0 0.744
#> SRR1643190     3  0.5178      0.864 0.256  0 0.744
#> SRR1643191     3  0.4399      0.905 0.188  0 0.812
#> SRR1643192     3  0.4399      0.905 0.188  0 0.812
#> SRR1643193     3  0.5058      0.872 0.244  0 0.756
#> SRR1643194     3  0.5058      0.872 0.244  0 0.756
#> SRR1643195     1  0.0000      0.988 1.000  0 0.000
#> SRR1643196     1  0.0000      0.988 1.000  0 0.000
#> SRR1643197     3  0.4399      0.905 0.188  0 0.812
#> SRR1643198     3  0.4399      0.905 0.188  0 0.812
#> SRR1643199     3  0.4399      0.905 0.188  0 0.812
#> SRR1643200     3  0.4399      0.905 0.188  0 0.812
#> SRR1643201     1  0.0237      0.985 0.996  0 0.004
#> SRR1643202     1  0.0237      0.985 0.996  0 0.004
#> SRR1643203     3  0.4399      0.905 0.188  0 0.812
#> SRR1643204     3  0.4399      0.905 0.188  0 0.812
#> SRR1643205     3  0.0000      0.829 0.000  0 1.000
#> SRR1643206     3  0.0000      0.829 0.000  0 1.000
#> SRR1643207     3  0.0000      0.829 0.000  0 1.000
#> SRR1643208     3  0.0000      0.829 0.000  0 1.000
#> SRR1643209     3  0.0000      0.829 0.000  0 1.000
#> SRR1643210     3  0.0000      0.829 0.000  0 1.000
#> SRR1643211     3  0.0000      0.829 0.000  0 1.000
#> SRR1643212     3  0.0000      0.829 0.000  0 1.000
#> SRR1643213     3  0.0000      0.829 0.000  0 1.000
#> SRR1643214     3  0.0000      0.829 0.000  0 1.000
#> SRR1643215     3  0.0000      0.829 0.000  0 1.000
#> SRR1643216     3  0.0000      0.829 0.000  0 1.000
#> SRR1643217     3  0.0000      0.829 0.000  0 1.000
#> SRR1643218     3  0.0000      0.829 0.000  0 1.000
#> SRR1643219     3  0.0000      0.829 0.000  0 1.000
#> SRR1643220     3  0.0000      0.829 0.000  0 1.000
#> SRR1643221     3  0.0000      0.829 0.000  0 1.000
#> SRR1643222     3  0.0000      0.829 0.000  0 1.000
#> SRR1643223     3  0.0000      0.829 0.000  0 1.000
#> SRR1643224     3  0.0000      0.829 0.000  0 1.000
#> SRR1643225     3  0.0000      0.829 0.000  0 1.000
#> SRR1643226     3  0.0000      0.829 0.000  0 1.000
#> SRR1643227     3  0.0000      0.829 0.000  0 1.000
#> SRR1643228     3  0.0000      0.829 0.000  0 1.000
#> SRR1643229     3  0.0000      0.829 0.000  0 1.000
#> SRR1643230     3  0.0000      0.829 0.000  0 1.000
#> SRR1643231     3  0.0000      0.829 0.000  0 1.000
#> SRR1643232     3  0.0000      0.829 0.000  0 1.000
#> SRR1643233     3  0.0000      0.829 0.000  0 1.000
#> SRR1643234     3  0.0000      0.829 0.000  0 1.000
#> SRR1643235     3  0.0000      0.829 0.000  0 1.000
#> SRR1643236     3  0.0000      0.829 0.000  0 1.000
#> SRR1643237     3  0.0000      0.829 0.000  0 1.000
#> SRR1643238     3  0.0000      0.829 0.000  0 1.000
#> SRR1643239     3  0.0000      0.829 0.000  0 1.000
#> SRR1643240     3  0.0000      0.829 0.000  0 1.000
#> SRR1643241     3  0.0000      0.829 0.000  0 1.000
#> SRR1643242     3  0.0000      0.829 0.000  0 1.000
#> SRR1643243     3  0.0000      0.829 0.000  0 1.000
#> SRR1643245     3  0.0000      0.829 0.000  0 1.000
#> SRR1643246     3  0.0000      0.829 0.000  0 1.000
#> SRR1643247     3  0.0000      0.829 0.000  0 1.000
#> SRR1643248     3  0.0000      0.829 0.000  0 1.000
#> SRR1643249     3  0.0000      0.829 0.000  0 1.000
#> SRR1643250     1  0.0000      0.988 1.000  0 0.000
#> SRR1643251     1  0.0000      0.988 1.000  0 0.000
#> SRR1643252     1  0.0000      0.988 1.000  0 0.000
#> SRR1643253     1  0.0000      0.988 1.000  0 0.000
#> SRR1643254     1  0.0000      0.988 1.000  0 0.000
#> SRR1643255     1  0.0000      0.988 1.000  0 0.000
#> SRR1643256     1  0.0000      0.988 1.000  0 0.000
#> SRR1643257     1  0.0000      0.988 1.000  0 0.000
#> SRR1643258     1  0.0000      0.988 1.000  0 0.000
#> SRR1643259     1  0.0000      0.988 1.000  0 0.000
#> SRR1643260     1  0.0000      0.988 1.000  0 0.000
#> SRR1643261     1  0.0000      0.988 1.000  0 0.000
#> SRR1643262     1  0.0000      0.988 1.000  0 0.000
#> SRR1643263     1  0.0000      0.988 1.000  0 0.000
#> SRR1643264     1  0.0000      0.988 1.000  0 0.000
#> SRR1643266     1  0.0000      0.988 1.000  0 0.000
#> SRR1643267     1  0.0000      0.988 1.000  0 0.000
#> SRR1643268     1  0.0000      0.988 1.000  0 0.000
#> SRR1643269     1  0.0000      0.988 1.000  0 0.000
#> SRR1643270     1  0.0000      0.988 1.000  0 0.000
#> SRR1643271     1  0.0000      0.988 1.000  0 0.000
#> SRR1643272     1  0.0000      0.988 1.000  0 0.000
#> SRR1643273     1  0.2356      0.915 0.928  0 0.072
#> SRR1643274     1  0.2356      0.915 0.928  0 0.072
#> SRR1643275     1  0.2356      0.915 0.928  0 0.072
#> SRR1643276     1  0.2356      0.915 0.928  0 0.072
#> SRR1643277     1  0.2356      0.915 0.928  0 0.072
#> SRR1643278     1  0.2356      0.915 0.928  0 0.072
#> SRR1643279     1  0.2356      0.915 0.928  0 0.072
#> SRR1643280     1  0.2356      0.915 0.928  0 0.072
#> SRR1643281     1  0.2356      0.915 0.928  0 0.072
#> SRR1643282     1  0.2356      0.915 0.928  0 0.072
#> SRR1643283     1  0.2356      0.915 0.928  0 0.072
#> SRR1643284     1  0.2356      0.915 0.928  0 0.072
#> SRR1643285     1  0.2356      0.915 0.928  0 0.072
#> SRR1643286     1  0.2356      0.915 0.928  0 0.072
#> SRR1643287     1  0.0000      0.988 1.000  0 0.000
#> SRR1643288     1  0.0000      0.988 1.000  0 0.000
#> SRR1643289     1  0.0000      0.988 1.000  0 0.000
#> SRR1643290     1  0.0000      0.988 1.000  0 0.000
#> SRR1643291     1  0.0000      0.988 1.000  0 0.000
#> SRR1643292     1  0.0000      0.988 1.000  0 0.000
#> SRR1643293     1  0.0000      0.988 1.000  0 0.000
#> SRR1643294     1  0.0000      0.988 1.000  0 0.000
#> SRR1643295     1  0.0000      0.988 1.000  0 0.000
#> SRR1643296     1  0.0000      0.988 1.000  0 0.000
#> SRR1643297     1  0.0000      0.988 1.000  0 0.000
#> SRR1643298     1  0.0000      0.988 1.000  0 0.000
#> SRR1643299     1  0.0000      0.988 1.000  0 0.000
#> SRR1643300     1  0.0000      0.988 1.000  0 0.000
#> SRR1643301     1  0.0592      0.979 0.988  0 0.012
#> SRR1643302     1  0.0592      0.979 0.988  0 0.012
#> SRR1643303     1  0.0592      0.979 0.988  0 0.012
#> SRR1643304     1  0.0592      0.979 0.988  0 0.012
#> SRR1643305     1  0.0592      0.979 0.988  0 0.012
#> SRR1643306     1  0.0592      0.979 0.988  0 0.012
#> SRR1643307     1  0.0592      0.979 0.988  0 0.012
#> SRR1643308     1  0.0592      0.979 0.988  0 0.012
#> SRR1643309     1  0.0592      0.979 0.988  0 0.012
#> SRR1643310     1  0.0592      0.979 0.988  0 0.012
#> SRR1643311     1  0.0592      0.979 0.988  0 0.012
#> SRR1643312     1  0.0592      0.979 0.988  0 0.012
#> SRR1643313     1  0.0592      0.979 0.988  0 0.012
#> SRR1643314     3  0.5138      0.866 0.252  0 0.748
#> SRR1643315     3  0.5178      0.864 0.256  0 0.744
#> SRR1643316     3  0.5178      0.864 0.256  0 0.744
#> SRR1643317     3  0.5178      0.864 0.256  0 0.744
#> SRR1643318     3  0.5178      0.864 0.256  0 0.744
#> SRR1643319     3  0.5178      0.864 0.256  0 0.744
#> SRR1643320     3  0.5178      0.864 0.256  0 0.744
#> SRR1643321     3  0.5178      0.864 0.256  0 0.744
#> SRR1643322     3  0.5178      0.864 0.256  0 0.744
#> SRR1643323     3  0.5178      0.864 0.256  0 0.744
#> SRR1643324     3  0.5178      0.864 0.256  0 0.744
#> SRR1643325     3  0.5178      0.864 0.256  0 0.744
#> SRR1643326     3  0.5178      0.864 0.256  0 0.744
#> SRR1643327     3  0.5178      0.864 0.256  0 0.744
#> SRR1643328     3  0.4399      0.905 0.188  0 0.812
#> SRR1643329     3  0.4399      0.905 0.188  0 0.812
#> SRR1643330     3  0.4399      0.905 0.188  0 0.812
#> SRR1643331     3  0.4399      0.905 0.188  0 0.812
#> SRR1643332     3  0.4399      0.905 0.188  0 0.812
#> SRR1643333     3  0.4399      0.905 0.188  0 0.812
#> SRR1643334     3  0.4399      0.905 0.188  0 0.812
#> SRR1643335     3  0.4399      0.905 0.188  0 0.812
#> SRR1643336     3  0.4399      0.905 0.188  0 0.812
#> SRR1643337     3  0.4399      0.905 0.188  0 0.812
#> SRR1643338     3  0.4399      0.905 0.188  0 0.812
#> SRR1643339     3  0.4399      0.905 0.188  0 0.812
#> SRR1643340     3  0.4399      0.905 0.188  0 0.812
#> SRR1643341     3  0.4399      0.905 0.188  0 0.812
#> SRR1643342     3  0.4399      0.905 0.188  0 0.812
#> SRR1643343     3  0.5178      0.864 0.256  0 0.744
#> SRR1643344     3  0.5178      0.864 0.256  0 0.744
#> SRR1643345     3  0.5178      0.864 0.256  0 0.744
#> SRR1643346     3  0.5178      0.864 0.256  0 0.744
#> SRR1643347     3  0.5178      0.864 0.256  0 0.744
#> SRR1643348     3  0.5178      0.864 0.256  0 0.744
#> SRR1643349     3  0.5178      0.864 0.256  0 0.744
#> SRR1643350     3  0.5178      0.864 0.256  0 0.744
#> SRR1643351     3  0.5178      0.864 0.256  0 0.744
#> SRR1643352     3  0.5178      0.864 0.256  0 0.744
#> SRR1643353     3  0.5178      0.864 0.256  0 0.744
#> SRR1643354     3  0.5178      0.864 0.256  0 0.744
#> SRR1643355     3  0.5178      0.864 0.256  0 0.744
#> SRR1643356     3  0.5178      0.864 0.256  0 0.744
#> SRR1643357     3  0.5178      0.864 0.256  0 0.744
#> SRR1643358     1  0.0000      0.988 1.000  0 0.000
#> SRR1643359     1  0.0000      0.988 1.000  0 0.000
#> SRR1643360     1  0.0000      0.988 1.000  0 0.000
#> SRR1643361     1  0.0000      0.988 1.000  0 0.000
#> SRR1643362     1  0.0000      0.988 1.000  0 0.000
#> SRR1643363     1  0.0000      0.988 1.000  0 0.000
#> SRR1643364     1  0.0000      0.988 1.000  0 0.000
#> SRR1643365     1  0.0000      0.988 1.000  0 0.000
#> SRR1643366     1  0.0000      0.988 1.000  0 0.000
#> SRR1643367     1  0.0000      0.988 1.000  0 0.000
#> SRR1643368     1  0.0000      0.988 1.000  0 0.000
#> SRR1643369     1  0.0000      0.988 1.000  0 0.000
#> SRR1643370     1  0.0000      0.988 1.000  0 0.000
#> SRR1643371     1  0.0000      0.988 1.000  0 0.000
#> SRR1643372     1  0.0000      0.988 1.000  0 0.000
#> SRR1643373     1  0.0000      0.988 1.000  0 0.000
#> SRR1643374     1  0.0000      0.988 1.000  0 0.000
#> SRR1643375     1  0.0000      0.988 1.000  0 0.000
#> SRR1643376     1  0.0000      0.988 1.000  0 0.000
#> SRR1643377     1  0.0000      0.988 1.000  0 0.000
#> SRR1643378     1  0.0000      0.988 1.000  0 0.000
#> SRR1643379     1  0.0000      0.988 1.000  0 0.000
#> SRR1643380     1  0.0000      0.988 1.000  0 0.000
#> SRR1643381     1  0.0000      0.988 1.000  0 0.000
#> SRR1643382     1  0.0000      0.988 1.000  0 0.000
#> SRR1643383     1  0.0000      0.988 1.000  0 0.000
#> SRR1643384     1  0.0000      0.988 1.000  0 0.000
#> SRR1643385     1  0.0000      0.988 1.000  0 0.000
#> SRR1643386     1  0.0000      0.988 1.000  0 0.000
#> SRR1643387     1  0.0000      0.988 1.000  0 0.000
#> SRR1643388     1  0.0000      0.988 1.000  0 0.000
#> SRR1643389     1  0.0000      0.988 1.000  0 0.000
#> SRR1643390     3  0.4399      0.905 0.188  0 0.812
#> SRR1643391     3  0.4399      0.905 0.188  0 0.812
#> SRR1643392     3  0.4399      0.905 0.188  0 0.812
#> SRR1643393     3  0.4399      0.905 0.188  0 0.812
#> SRR1643394     3  0.4399      0.905 0.188  0 0.812
#> SRR1643395     3  0.4399      0.905 0.188  0 0.812
#> SRR1643396     3  0.4399      0.905 0.188  0 0.812
#> SRR1643397     3  0.4399      0.905 0.188  0 0.812
#> SRR1643398     3  0.4399      0.905 0.188  0 0.812
#> SRR1643399     3  0.4399      0.905 0.188  0 0.812
#> SRR1643400     3  0.4399      0.905 0.188  0 0.812
#> SRR1643401     3  0.4399      0.905 0.188  0 0.812
#> SRR1643402     3  0.4399      0.905 0.188  0 0.812
#> SRR1643403     3  0.4399      0.905 0.188  0 0.812
#> SRR1643404     3  0.4399      0.905 0.188  0 0.812
#> SRR1643405     3  0.4399      0.905 0.188  0 0.812
#> SRR1643406     3  0.4399      0.905 0.188  0 0.812
#> SRR1643407     3  0.4399      0.905 0.188  0 0.812
#> SRR1643408     3  0.4399      0.905 0.188  0 0.812
#> SRR1643409     3  0.4399      0.905 0.188  0 0.812
#> SRR1643410     3  0.4399      0.905 0.188  0 0.812
#> SRR1643411     3  0.4399      0.905 0.188  0 0.812
#> SRR1643412     3  0.4399      0.905 0.188  0 0.812
#> SRR1643413     3  0.4399      0.905 0.188  0 0.812
#> SRR1643414     3  0.4399      0.905 0.188  0 0.812
#> SRR1643415     3  0.4399      0.905 0.188  0 0.812
#> SRR1643416     3  0.4399      0.905 0.188  0 0.812
#> SRR1643417     3  0.4399      0.905 0.188  0 0.812
#> SRR1643418     1  0.0000      0.988 1.000  0 0.000
#> SRR1643419     1  0.0000      0.988 1.000  0 0.000
#> SRR1643420     1  0.0000      0.988 1.000  0 0.000
#> SRR1643421     1  0.0000      0.988 1.000  0 0.000
#> SRR1643422     1  0.0000      0.988 1.000  0 0.000
#> SRR1643423     1  0.0000      0.988 1.000  0 0.000
#> SRR1643424     1  0.0000      0.988 1.000  0 0.000
#> SRR1643425     1  0.0000      0.988 1.000  0 0.000
#> SRR1643426     1  0.0000      0.988 1.000  0 0.000
#> SRR1643427     1  0.0000      0.988 1.000  0 0.000
#> SRR1643428     1  0.0000      0.988 1.000  0 0.000
#> SRR1643429     1  0.0000      0.988 1.000  0 0.000
#> SRR1643430     1  0.0000      0.988 1.000  0 0.000
#> SRR1643431     1  0.0000      0.988 1.000  0 0.000
#> SRR1643432     1  0.0000      0.988 1.000  0 0.000
#> SRR1643433     1  0.0000      0.988 1.000  0 0.000
#> SRR1643434     1  0.0000      0.988 1.000  0 0.000
#> SRR1643435     1  0.0000      0.988 1.000  0 0.000
#> SRR1643436     1  0.0000      0.988 1.000  0 0.000
#> SRR1643437     1  0.0000      0.988 1.000  0 0.000
#> SRR1643438     1  0.0000      0.988 1.000  0 0.000
#> SRR1643439     1  0.0000      0.988 1.000  0 0.000
#> SRR1643440     1  0.0000      0.988 1.000  0 0.000
#> SRR1643441     1  0.0000      0.988 1.000  0 0.000
#> SRR1643442     1  0.0000      0.988 1.000  0 0.000
#> SRR1643443     2  0.0000      1.000 0.000  1 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1 0.000
#> SRR1643505     2  0.0000      1.000 0.000  1 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1 0.000

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1 p2    p3    p4
#> SRR1643167     1  0.1302      0.877 0.956  0 0.044 0.000
#> SRR1643168     1  0.1302      0.877 0.956  0 0.044 0.000
#> SRR1643169     1  0.1302      0.877 0.956  0 0.044 0.000
#> SRR1643170     1  0.1302      0.877 0.956  0 0.044 0.000
#> SRR1643171     1  0.1389      0.877 0.952  0 0.048 0.000
#> SRR1643172     1  0.1389      0.877 0.952  0 0.048 0.000
#> SRR1643173     1  0.1389      0.877 0.952  0 0.048 0.000
#> SRR1643174     1  0.1389      0.877 0.952  0 0.048 0.000
#> SRR1643175     1  0.1406      0.869 0.960  0 0.016 0.024
#> SRR1643176     1  0.1406      0.869 0.960  0 0.016 0.024
#> SRR1643177     1  0.1406      0.869 0.960  0 0.016 0.024
#> SRR1643178     1  0.1406      0.869 0.960  0 0.016 0.024
#> SRR1643180     1  0.1389      0.877 0.952  0 0.048 0.000
#> SRR1643181     1  0.1389      0.877 0.952  0 0.048 0.000
#> SRR1643182     1  0.1389      0.877 0.952  0 0.048 0.000
#> SRR1643183     1  0.1389      0.877 0.952  0 0.048 0.000
#> SRR1643184     1  0.1389      0.877 0.952  0 0.048 0.000
#> SRR1643185     1  0.1389      0.877 0.952  0 0.048 0.000
#> SRR1643186     1  0.1389      0.877 0.952  0 0.048 0.000
#> SRR1643187     1  0.1042      0.864 0.972  0 0.020 0.008
#> SRR1643188     1  0.1042      0.864 0.972  0 0.020 0.008
#> SRR1643189     1  0.1042      0.864 0.972  0 0.020 0.008
#> SRR1643190     1  0.1042      0.864 0.972  0 0.020 0.008
#> SRR1643191     1  0.1389      0.877 0.952  0 0.048 0.000
#> SRR1643192     1  0.1389      0.877 0.952  0 0.048 0.000
#> SRR1643193     1  0.0804      0.873 0.980  0 0.008 0.012
#> SRR1643194     1  0.0804      0.873 0.980  0 0.008 0.012
#> SRR1643195     4  0.1743      0.960 0.056  0 0.004 0.940
#> SRR1643196     4  0.1743      0.960 0.056  0 0.004 0.940
#> SRR1643197     1  0.1389      0.877 0.952  0 0.048 0.000
#> SRR1643198     1  0.1389      0.877 0.952  0 0.048 0.000
#> SRR1643199     1  0.1302      0.877 0.956  0 0.044 0.000
#> SRR1643200     1  0.1302      0.877 0.956  0 0.044 0.000
#> SRR1643201     1  0.2654      0.813 0.888  0 0.004 0.108
#> SRR1643202     1  0.2654      0.813 0.888  0 0.004 0.108
#> SRR1643203     1  0.0469      0.877 0.988  0 0.012 0.000
#> SRR1643204     1  0.0469      0.877 0.988  0 0.012 0.000
#> SRR1643205     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643206     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643207     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643208     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643209     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643210     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643211     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643212     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643213     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643214     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643215     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643216     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643217     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643218     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643219     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643220     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643221     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643222     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643223     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643224     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643225     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643226     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643227     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643228     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643229     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643230     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643231     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643232     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643233     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643234     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643235     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643236     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643237     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643238     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643239     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643240     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643241     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643242     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643243     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643245     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643246     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643247     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643248     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643249     3  0.1211      1.000 0.040  0 0.960 0.000
#> SRR1643250     4  0.1118      0.973 0.036  0 0.000 0.964
#> SRR1643251     4  0.1118      0.973 0.036  0 0.000 0.964
#> SRR1643252     4  0.1118      0.973 0.036  0 0.000 0.964
#> SRR1643253     4  0.1118      0.973 0.036  0 0.000 0.964
#> SRR1643254     4  0.1118      0.973 0.036  0 0.000 0.964
#> SRR1643255     4  0.1118      0.973 0.036  0 0.000 0.964
#> SRR1643256     4  0.1118      0.973 0.036  0 0.000 0.964
#> SRR1643257     4  0.1118      0.973 0.036  0 0.000 0.964
#> SRR1643258     4  0.1118      0.973 0.036  0 0.000 0.964
#> SRR1643259     4  0.1118      0.973 0.036  0 0.000 0.964
#> SRR1643260     4  0.1118      0.973 0.036  0 0.000 0.964
#> SRR1643261     4  0.1118      0.973 0.036  0 0.000 0.964
#> SRR1643262     4  0.0921      0.976 0.028  0 0.000 0.972
#> SRR1643263     4  0.0921      0.976 0.028  0 0.000 0.972
#> SRR1643264     4  0.0921      0.976 0.028  0 0.000 0.972
#> SRR1643266     4  0.0921      0.976 0.028  0 0.000 0.972
#> SRR1643267     4  0.0921      0.976 0.028  0 0.000 0.972
#> SRR1643268     4  0.0921      0.976 0.028  0 0.000 0.972
#> SRR1643269     4  0.0921      0.976 0.028  0 0.000 0.972
#> SRR1643270     4  0.0921      0.976 0.028  0 0.000 0.972
#> SRR1643271     4  0.0921      0.976 0.028  0 0.000 0.972
#> SRR1643272     4  0.0921      0.976 0.028  0 0.000 0.972
#> SRR1643273     1  0.4872      0.672 0.728  0 0.028 0.244
#> SRR1643274     1  0.4872      0.672 0.728  0 0.028 0.244
#> SRR1643275     1  0.4872      0.672 0.728  0 0.028 0.244
#> SRR1643276     1  0.4872      0.672 0.728  0 0.028 0.244
#> SRR1643277     1  0.4872      0.672 0.728  0 0.028 0.244
#> SRR1643278     1  0.4872      0.672 0.728  0 0.028 0.244
#> SRR1643279     1  0.4872      0.672 0.728  0 0.028 0.244
#> SRR1643280     1  0.4872      0.672 0.728  0 0.028 0.244
#> SRR1643281     1  0.4872      0.672 0.728  0 0.028 0.244
#> SRR1643282     1  0.4872      0.672 0.728  0 0.028 0.244
#> SRR1643283     1  0.4872      0.672 0.728  0 0.028 0.244
#> SRR1643284     1  0.4872      0.672 0.728  0 0.028 0.244
#> SRR1643285     1  0.4872      0.672 0.728  0 0.028 0.244
#> SRR1643286     1  0.4872      0.672 0.728  0 0.028 0.244
#> SRR1643287     4  0.1833      0.955 0.024  0 0.032 0.944
#> SRR1643288     4  0.1833      0.955 0.024  0 0.032 0.944
#> SRR1643289     4  0.1833      0.955 0.024  0 0.032 0.944
#> SRR1643290     4  0.1833      0.955 0.024  0 0.032 0.944
#> SRR1643291     4  0.1833      0.955 0.024  0 0.032 0.944
#> SRR1643292     4  0.1833      0.955 0.024  0 0.032 0.944
#> SRR1643293     4  0.1833      0.955 0.024  0 0.032 0.944
#> SRR1643294     4  0.1833      0.955 0.024  0 0.032 0.944
#> SRR1643295     4  0.1833      0.955 0.024  0 0.032 0.944
#> SRR1643296     4  0.1833      0.955 0.024  0 0.032 0.944
#> SRR1643297     4  0.1833      0.955 0.024  0 0.032 0.944
#> SRR1643298     4  0.1833      0.955 0.024  0 0.032 0.944
#> SRR1643299     4  0.1833      0.955 0.024  0 0.032 0.944
#> SRR1643300     4  0.1833      0.955 0.024  0 0.032 0.944
#> SRR1643301     1  0.4948      0.324 0.560  0 0.000 0.440
#> SRR1643302     1  0.4948      0.324 0.560  0 0.000 0.440
#> SRR1643303     1  0.4948      0.324 0.560  0 0.000 0.440
#> SRR1643304     1  0.4948      0.324 0.560  0 0.000 0.440
#> SRR1643305     1  0.4925      0.354 0.572  0 0.000 0.428
#> SRR1643306     1  0.4948      0.324 0.560  0 0.000 0.440
#> SRR1643307     1  0.4948      0.324 0.560  0 0.000 0.440
#> SRR1643308     1  0.4948      0.324 0.560  0 0.000 0.440
#> SRR1643309     1  0.4948      0.324 0.560  0 0.000 0.440
#> SRR1643310     1  0.4948      0.324 0.560  0 0.000 0.440
#> SRR1643311     1  0.4948      0.324 0.560  0 0.000 0.440
#> SRR1643312     1  0.4948      0.324 0.560  0 0.000 0.440
#> SRR1643313     1  0.4948      0.324 0.560  0 0.000 0.440
#> SRR1643314     1  0.1182      0.875 0.968  0 0.016 0.016
#> SRR1643315     1  0.1182      0.875 0.968  0 0.016 0.016
#> SRR1643316     1  0.1182      0.875 0.968  0 0.016 0.016
#> SRR1643317     1  0.1182      0.875 0.968  0 0.016 0.016
#> SRR1643318     1  0.1182      0.875 0.968  0 0.016 0.016
#> SRR1643319     1  0.1059      0.876 0.972  0 0.016 0.012
#> SRR1643320     1  0.1182      0.875 0.968  0 0.016 0.016
#> SRR1643321     1  0.1182      0.875 0.968  0 0.016 0.016
#> SRR1643322     1  0.1182      0.875 0.968  0 0.016 0.016
#> SRR1643323     1  0.1182      0.875 0.968  0 0.016 0.016
#> SRR1643324     1  0.1182      0.875 0.968  0 0.016 0.016
#> SRR1643325     1  0.1182      0.875 0.968  0 0.016 0.016
#> SRR1643326     1  0.1182      0.875 0.968  0 0.016 0.016
#> SRR1643327     1  0.1182      0.875 0.968  0 0.016 0.016
#> SRR1643328     1  0.1940      0.873 0.924  0 0.076 0.000
#> SRR1643329     1  0.1940      0.873 0.924  0 0.076 0.000
#> SRR1643330     1  0.1940      0.873 0.924  0 0.076 0.000
#> SRR1643331     1  0.1940      0.873 0.924  0 0.076 0.000
#> SRR1643332     1  0.1940      0.873 0.924  0 0.076 0.000
#> SRR1643333     1  0.1940      0.873 0.924  0 0.076 0.000
#> SRR1643334     1  0.1940      0.873 0.924  0 0.076 0.000
#> SRR1643335     1  0.1940      0.873 0.924  0 0.076 0.000
#> SRR1643336     1  0.1940      0.873 0.924  0 0.076 0.000
#> SRR1643337     1  0.1940      0.873 0.924  0 0.076 0.000
#> SRR1643338     1  0.1940      0.873 0.924  0 0.076 0.000
#> SRR1643339     1  0.1940      0.873 0.924  0 0.076 0.000
#> SRR1643340     1  0.1940      0.873 0.924  0 0.076 0.000
#> SRR1643341     1  0.1940      0.873 0.924  0 0.076 0.000
#> SRR1643342     1  0.1940      0.873 0.924  0 0.076 0.000
#> SRR1643343     1  0.2329      0.874 0.916  0 0.072 0.012
#> SRR1643344     1  0.2329      0.874 0.916  0 0.072 0.012
#> SRR1643345     1  0.2329      0.874 0.916  0 0.072 0.012
#> SRR1643346     1  0.2329      0.874 0.916  0 0.072 0.012
#> SRR1643347     1  0.2329      0.874 0.916  0 0.072 0.012
#> SRR1643348     1  0.2329      0.874 0.916  0 0.072 0.012
#> SRR1643349     1  0.2329      0.874 0.916  0 0.072 0.012
#> SRR1643350     1  0.2329      0.874 0.916  0 0.072 0.012
#> SRR1643351     1  0.2329      0.874 0.916  0 0.072 0.012
#> SRR1643352     1  0.2329      0.874 0.916  0 0.072 0.012
#> SRR1643353     1  0.2329      0.874 0.916  0 0.072 0.012
#> SRR1643354     1  0.2329      0.874 0.916  0 0.072 0.012
#> SRR1643355     1  0.2329      0.874 0.916  0 0.072 0.012
#> SRR1643356     1  0.2329      0.874 0.916  0 0.072 0.012
#> SRR1643357     1  0.2329      0.874 0.916  0 0.072 0.012
#> SRR1643358     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643359     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643360     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643361     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643362     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643363     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643364     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643365     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643366     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643367     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643368     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643369     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643370     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643371     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643372     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643373     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643374     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643375     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643376     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643377     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643378     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643379     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643380     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643381     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643382     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643383     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643384     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643385     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643386     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643387     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643388     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643389     4  0.0707      0.978 0.020  0 0.000 0.980
#> SRR1643390     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643391     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643392     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643393     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643394     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643395     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643396     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643397     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643398     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643399     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643400     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643401     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643402     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643403     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643404     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643405     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643406     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643407     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643408     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643409     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643410     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643411     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643412     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643413     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643414     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643415     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643416     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643417     1  0.1716      0.876 0.936  0 0.064 0.000
#> SRR1643418     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643419     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643420     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643421     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643422     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643423     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643424     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643425     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643426     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643427     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643428     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643429     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643430     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643431     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643432     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643433     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643434     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643435     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643436     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643437     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643438     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643439     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643440     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643441     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643442     4  0.0707      0.969 0.000  0 0.020 0.980
#> SRR1643443     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643505     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1 0.000 0.000

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1    p2    p3    p4    p5
#> SRR1643167     1  0.3081     0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643168     1  0.3081     0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643169     1  0.3081     0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643170     1  0.3081     0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643171     1  0.3039     0.7946 0.836 0.000 0.012 0.000 0.152
#> SRR1643172     1  0.3039     0.7946 0.836 0.000 0.012 0.000 0.152
#> SRR1643173     1  0.3039     0.7946 0.836 0.000 0.012 0.000 0.152
#> SRR1643174     1  0.3039     0.7946 0.836 0.000 0.012 0.000 0.152
#> SRR1643175     1  0.5384     0.7103 0.664 0.000 0.000 0.140 0.196
#> SRR1643176     1  0.5384     0.7103 0.664 0.000 0.000 0.140 0.196
#> SRR1643177     1  0.5384     0.7103 0.664 0.000 0.000 0.140 0.196
#> SRR1643178     1  0.5384     0.7103 0.664 0.000 0.000 0.140 0.196
#> SRR1643180     1  0.3081     0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643181     1  0.3081     0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643182     1  0.3081     0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643183     1  0.3081     0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643184     1  0.3081     0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643185     1  0.3081     0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643186     1  0.3081     0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643187     1  0.3123     0.7981 0.812 0.000 0.004 0.000 0.184
#> SRR1643188     1  0.3123     0.7981 0.812 0.000 0.004 0.000 0.184
#> SRR1643189     1  0.3123     0.7981 0.812 0.000 0.004 0.000 0.184
#> SRR1643190     1  0.3123     0.7981 0.812 0.000 0.004 0.000 0.184
#> SRR1643191     1  0.3039     0.7946 0.836 0.000 0.012 0.000 0.152
#> SRR1643192     1  0.3039     0.7946 0.836 0.000 0.012 0.000 0.152
#> SRR1643193     1  0.3421     0.7798 0.788 0.000 0.000 0.008 0.204
#> SRR1643194     1  0.3421     0.7798 0.788 0.000 0.000 0.008 0.204
#> SRR1643195     4  0.4639     0.6758 0.056 0.000 0.000 0.708 0.236
#> SRR1643196     4  0.4639     0.6758 0.056 0.000 0.000 0.708 0.236
#> SRR1643197     1  0.2909     0.7973 0.848 0.000 0.012 0.000 0.140
#> SRR1643198     1  0.2909     0.7973 0.848 0.000 0.012 0.000 0.140
#> SRR1643199     1  0.3081     0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643200     1  0.3081     0.7941 0.832 0.000 0.012 0.000 0.156
#> SRR1643201     1  0.5139     0.6787 0.648 0.000 0.000 0.072 0.280
#> SRR1643202     1  0.5139     0.6787 0.648 0.000 0.000 0.072 0.280
#> SRR1643203     1  0.2690     0.7957 0.844 0.000 0.000 0.000 0.156
#> SRR1643204     1  0.2690     0.7957 0.844 0.000 0.000 0.000 0.156
#> SRR1643205     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643206     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643207     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643208     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643209     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643210     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643211     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643212     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643213     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643214     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643215     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643216     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643217     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643218     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643219     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643220     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643221     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643222     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643223     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643224     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643225     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643226     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643227     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643228     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643229     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643230     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643231     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643232     3  0.0451     0.9985 0.008 0.000 0.988 0.000 0.004
#> SRR1643233     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643234     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643235     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643236     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643237     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643238     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643239     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643240     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643241     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643242     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643243     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643245     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643246     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643247     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643248     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643249     3  0.0290     0.9988 0.008 0.000 0.992 0.000 0.000
#> SRR1643250     4  0.3081     0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643251     4  0.3081     0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643252     4  0.3081     0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643253     4  0.3081     0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643254     4  0.3081     0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643255     4  0.3081     0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643256     4  0.3081     0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643257     4  0.3081     0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643258     4  0.3081     0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643259     4  0.3081     0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643260     4  0.3081     0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643261     4  0.3081     0.7490 0.012 0.000 0.000 0.832 0.156
#> SRR1643262     4  0.2516     0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643263     4  0.2516     0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643264     4  0.2516     0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643266     4  0.2516     0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643267     4  0.2516     0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643268     4  0.2516     0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643269     4  0.2516     0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643270     4  0.2516     0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643271     4  0.2516     0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643272     4  0.2516     0.7599 0.000 0.000 0.000 0.860 0.140
#> SRR1643273     1  0.6636     0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643274     1  0.6636     0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643275     1  0.6636     0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643276     1  0.6636     0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643277     1  0.6636     0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643278     1  0.6636     0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643279     1  0.6636     0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643280     1  0.6636     0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643281     1  0.6636     0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643282     1  0.6636     0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643283     1  0.6636     0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643284     1  0.6636     0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643285     1  0.6636     0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643286     1  0.6636     0.2868 0.432 0.000 0.000 0.232 0.336
#> SRR1643287     4  0.4420     0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643288     4  0.4420     0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643289     4  0.4420     0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643290     4  0.4420     0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643291     4  0.4420     0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643292     4  0.4420     0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643293     4  0.4420     0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643294     4  0.4420     0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643295     4  0.4420     0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643296     4  0.4420     0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643297     4  0.4420     0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643298     4  0.4420     0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643299     4  0.4420     0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643300     4  0.4420     0.6724 0.004 0.000 0.000 0.548 0.448
#> SRR1643301     4  0.6493     0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643302     4  0.6493     0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643303     4  0.6493     0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643304     4  0.6493     0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643305     4  0.6477     0.0586 0.392 0.000 0.000 0.424 0.184
#> SRR1643306     4  0.6493     0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643307     4  0.6493     0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643308     4  0.6493     0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643309     4  0.6493     0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643310     4  0.6493     0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643311     4  0.6493     0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643312     4  0.6493     0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643313     4  0.6493     0.0847 0.384 0.000 0.000 0.428 0.188
#> SRR1643314     1  0.3507     0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643315     1  0.3507     0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643316     1  0.3507     0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643317     1  0.3507     0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643318     1  0.3507     0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643319     1  0.3507     0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643320     1  0.3507     0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643321     1  0.3507     0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643322     1  0.3507     0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643323     1  0.3507     0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643324     1  0.3507     0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643325     1  0.3507     0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643326     1  0.3507     0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643327     1  0.3507     0.7716 0.828 0.000 0.000 0.052 0.120
#> SRR1643328     1  0.0693     0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643329     1  0.0693     0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643330     1  0.0693     0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643331     1  0.0693     0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643332     1  0.0693     0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643333     1  0.0693     0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643334     1  0.0693     0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643335     1  0.0693     0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643336     1  0.0693     0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643337     1  0.0693     0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643338     1  0.0693     0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643339     1  0.0693     0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643340     1  0.0693     0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643341     1  0.0693     0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643342     1  0.0693     0.8191 0.980 0.000 0.012 0.000 0.008
#> SRR1643343     1  0.5195     0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643344     1  0.5195     0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643345     1  0.5195     0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643346     1  0.5195     0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643347     1  0.5195     0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643348     1  0.5195     0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643349     1  0.5195     0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643350     1  0.5195     0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643351     1  0.5195     0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643352     1  0.5195     0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643353     1  0.5195     0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643354     1  0.5195     0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643355     1  0.5195     0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643356     1  0.5195     0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643357     1  0.5195     0.7046 0.692 0.000 0.008 0.088 0.212
#> SRR1643358     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643359     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643360     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643361     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643362     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643363     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643364     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643365     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643366     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643367     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643368     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643369     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643370     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643371     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643372     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643373     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643374     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643375     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643376     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643377     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643378     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643379     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643380     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643381     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643382     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643383     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643384     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643385     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643386     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643387     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643388     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643389     4  0.0000     0.7755 0.000 0.000 0.000 1.000 0.000
#> SRR1643390     1  0.1809     0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643391     1  0.1809     0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643392     1  0.1809     0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643393     1  0.1809     0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643394     1  0.1809     0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643395     1  0.1809     0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643396     1  0.1809     0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643397     1  0.1809     0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643398     1  0.1809     0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643399     1  0.1809     0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643400     1  0.1809     0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643401     1  0.1809     0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643402     1  0.1809     0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643403     1  0.1809     0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643404     1  0.1809     0.8138 0.928 0.000 0.012 0.000 0.060
#> SRR1643405     1  0.1942     0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643406     1  0.1942     0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643407     1  0.1942     0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643408     1  0.1942     0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643409     1  0.1942     0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643410     1  0.1942     0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643411     1  0.1942     0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643412     1  0.1942     0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643413     1  0.1942     0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643414     1  0.1942     0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643415     1  0.1942     0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643416     1  0.1942     0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643417     1  0.1942     0.8124 0.920 0.000 0.012 0.000 0.068
#> SRR1643418     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643419     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643420     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643421     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643422     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643423     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643424     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643425     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643426     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643427     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643428     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643429     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643430     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643431     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643432     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643433     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643434     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643435     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643436     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643437     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643438     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643439     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643440     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643441     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643442     4  0.4196     0.6711 0.000 0.000 0.004 0.640 0.356
#> SRR1643443     2  0.1410     0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643444     2  0.1410     0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643445     2  0.1410     0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643446     2  0.1410     0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643447     2  0.1410     0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643448     2  0.1410     0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643449     2  0.1410     0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643450     2  0.1410     0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643451     2  0.1410     0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643452     2  0.1410     0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643453     2  0.1410     0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643454     2  0.1410     0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643455     2  0.1410     0.9658 0.000 0.940 0.000 0.000 0.060
#> SRR1643456     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643457     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643458     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643459     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643460     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643461     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643462     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643463     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643464     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643466     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643467     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643468     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643469     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643470     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643471     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643472     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643473     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643474     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643475     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643477     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643478     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643479     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643480     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643481     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643482     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643483     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643484     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643485     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643486     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643487     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643488     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643489     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643490     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643491     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643492     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643493     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643494     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643495     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643496     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643497     2  0.0290     0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643498     2  0.0290     0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643499     2  0.0290     0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643500     2  0.0290     0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643501     2  0.0290     0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643502     2  0.0290     0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643503     2  0.0290     0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643504     2  0.0290     0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643505     2  0.0880     0.9733 0.000 0.968 0.000 0.000 0.032
#> SRR1643506     2  0.0290     0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643507     2  0.0290     0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643508     2  0.0290     0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643509     2  0.0290     0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643510     2  0.0290     0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643511     2  0.0290     0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643512     2  0.0290     0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643513     2  0.0290     0.9740 0.000 0.992 0.000 0.000 0.008
#> SRR1643531     2  0.1410     0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643532     2  0.1410     0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643533     2  0.1410     0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643534     2  0.1410     0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643535     2  0.1410     0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643536     2  0.1410     0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643537     2  0.1410     0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643538     2  0.1410     0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643539     2  0.1410     0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643540     2  0.1410     0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643541     2  0.1410     0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643542     2  0.1410     0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643543     2  0.1410     0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643544     2  0.1410     0.9654 0.000 0.940 0.000 0.000 0.060
#> SRR1643514     2  0.0963     0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643515     2  0.0963     0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643516     2  0.0963     0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643517     2  0.0963     0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643518     2  0.0963     0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643519     2  0.0963     0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643520     2  0.0963     0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643521     2  0.0963     0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643522     2  0.0963     0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643523     2  0.0963     0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643524     2  0.0963     0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643525     2  0.0963     0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643526     2  0.0963     0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643527     2  0.0963     0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643528     2  0.0963     0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643529     2  0.0963     0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643530     2  0.0963     0.9723 0.000 0.964 0.000 0.000 0.036
#> SRR1643545     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643546     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643547     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643548     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643549     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643550     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643551     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643552     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643553     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643554     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643555     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643556     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643558     2  0.0609     0.9729 0.000 0.980 0.000 0.000 0.020
#> SRR1643559     2  0.1043     0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643560     2  0.1043     0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643561     2  0.1043     0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643562     2  0.1043     0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643563     2  0.1043     0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643564     2  0.1043     0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643565     2  0.1043     0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643566     2  0.1043     0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643567     2  0.1043     0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643568     2  0.1043     0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643569     2  0.1043     0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643570     2  0.1043     0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643571     2  0.1043     0.9715 0.000 0.960 0.000 0.000 0.040
#> SRR1643572     2  0.1043     0.9715 0.000 0.960 0.000 0.000 0.040

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2    p3    p4    p5    p6
#> SRR1643167     1  0.0146      0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643168     1  0.0146      0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643169     1  0.0146      0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643170     1  0.0146      0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643171     1  0.0260      0.563 0.992 0.000 0.008 0.000 0.000 0.000
#> SRR1643172     1  0.0260      0.563 0.992 0.000 0.008 0.000 0.000 0.000
#> SRR1643173     1  0.0260      0.563 0.992 0.000 0.008 0.000 0.000 0.000
#> SRR1643174     1  0.0260      0.563 0.992 0.000 0.008 0.000 0.000 0.000
#> SRR1643175     1  0.3830      0.363 0.788 0.000 0.000 0.148 0.020 0.044
#> SRR1643176     1  0.3830      0.363 0.788 0.000 0.000 0.148 0.020 0.044
#> SRR1643177     1  0.3830      0.363 0.788 0.000 0.000 0.148 0.020 0.044
#> SRR1643178     1  0.3830      0.363 0.788 0.000 0.000 0.148 0.020 0.044
#> SRR1643180     1  0.0146      0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643181     1  0.0146      0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643182     1  0.0146      0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643183     1  0.0146      0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643184     1  0.0146      0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643185     1  0.0146      0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643186     1  0.0146      0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643187     1  0.2146      0.514 0.880 0.000 0.000 0.000 0.004 0.116
#> SRR1643188     1  0.2146      0.514 0.880 0.000 0.000 0.000 0.004 0.116
#> SRR1643189     1  0.2146      0.514 0.880 0.000 0.000 0.000 0.004 0.116
#> SRR1643190     1  0.2146      0.514 0.880 0.000 0.000 0.000 0.004 0.116
#> SRR1643191     1  0.0260      0.563 0.992 0.000 0.008 0.000 0.000 0.000
#> SRR1643192     1  0.0260      0.563 0.992 0.000 0.008 0.000 0.000 0.000
#> SRR1643193     1  0.1732      0.498 0.920 0.000 0.004 0.000 0.004 0.072
#> SRR1643194     1  0.1674      0.502 0.924 0.000 0.004 0.000 0.004 0.068
#> SRR1643195     4  0.6840      0.378 0.172 0.000 0.000 0.500 0.112 0.216
#> SRR1643196     4  0.6840      0.378 0.172 0.000 0.000 0.500 0.112 0.216
#> SRR1643197     1  0.0260      0.563 0.992 0.000 0.008 0.000 0.000 0.000
#> SRR1643198     1  0.0260      0.563 0.992 0.000 0.008 0.000 0.000 0.000
#> SRR1643199     1  0.0146      0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643200     1  0.0146      0.562 0.996 0.000 0.004 0.000 0.000 0.000
#> SRR1643201     1  0.3965      0.353 0.792 0.000 0.000 0.024 0.076 0.108
#> SRR1643202     1  0.3965      0.353 0.792 0.000 0.000 0.024 0.076 0.108
#> SRR1643203     1  0.0260      0.561 0.992 0.000 0.000 0.000 0.000 0.008
#> SRR1643204     1  0.0260      0.561 0.992 0.000 0.000 0.000 0.000 0.008
#> SRR1643205     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643206     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643207     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643208     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643209     3  0.0146      0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643210     3  0.0146      0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643211     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643212     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643213     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643214     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643215     3  0.0146      0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643216     3  0.0146      0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643217     3  0.0146      0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643218     3  0.0146      0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643219     3  0.0146      0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643220     3  0.0146      0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643221     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643222     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643223     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643224     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643225     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643226     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643227     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643228     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643229     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643230     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643231     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643232     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643233     3  0.0146      0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643234     3  0.0146      0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643235     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643236     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643237     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643238     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643239     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643240     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643241     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643242     3  0.0146      0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643243     3  0.0146      0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643245     3  0.0146      0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643246     3  0.0146      0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643247     3  0.0146      0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643248     3  0.0000      0.999 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643249     3  0.0146      0.998 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643250     4  0.4773      0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643251     4  0.4773      0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643252     4  0.4773      0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643253     4  0.4773      0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643254     4  0.4773      0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643255     4  0.4773      0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643256     4  0.4773      0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643257     4  0.4773      0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643258     4  0.4773      0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643259     4  0.4773      0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643260     4  0.4773      0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643261     4  0.4773      0.690 0.020 0.000 0.000 0.712 0.112 0.156
#> SRR1643262     4  0.4490      0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643263     4  0.4490      0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643264     4  0.4490      0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643266     4  0.4490      0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643267     4  0.4490      0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643268     4  0.4490      0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643269     4  0.4490      0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643270     4  0.4490      0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643271     4  0.4490      0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643272     4  0.4490      0.701 0.012 0.000 0.000 0.732 0.108 0.148
#> SRR1643273     6  0.7199      0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643274     6  0.7199      0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643275     6  0.7199      0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643276     6  0.7199      0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643277     6  0.7199      0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643278     6  0.7199      0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643279     6  0.7199      0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643280     6  0.7199      0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643281     6  0.7199      0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643282     6  0.7199      0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643283     6  0.7199      0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643284     6  0.7199      0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643285     6  0.7199      0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643286     6  0.7199      0.376 0.196 0.000 0.000 0.116 0.276 0.412
#> SRR1643287     5  0.5611      0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643288     5  0.5611      0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643289     5  0.5611      0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643290     5  0.5611      0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643291     5  0.5611      0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643292     5  0.5611      0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643293     5  0.5611      0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643294     5  0.5611      0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643295     5  0.5611      0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643296     5  0.5611      0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643297     5  0.5611      0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643298     5  0.5611      0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643299     5  0.5611      0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643300     5  0.5611      0.495 0.000 0.000 0.000 0.232 0.544 0.224
#> SRR1643301     6  0.7325      0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643302     6  0.7325      0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643303     6  0.7325      0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643304     6  0.7325      0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643305     6  0.7325      0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643306     6  0.7325      0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643307     6  0.7325      0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643308     6  0.7325      0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643309     6  0.7325      0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643310     6  0.7325      0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643311     6  0.7325      0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643312     6  0.7325      0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643313     6  0.7325      0.297 0.244 0.000 0.000 0.296 0.108 0.352
#> SRR1643314     1  0.6102      0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643315     1  0.6102      0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643316     1  0.6102      0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643317     1  0.6102      0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643318     1  0.6102      0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643319     1  0.6102      0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643320     1  0.6102      0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643321     1  0.6102      0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643322     1  0.6102      0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643323     1  0.6102      0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643324     1  0.6102      0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643325     1  0.6102      0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643326     1  0.6102      0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643327     1  0.6102      0.199 0.456 0.000 0.004 0.080 0.048 0.412
#> SRR1643328     1  0.4174      0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643329     1  0.4174      0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643330     1  0.4174      0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643331     1  0.4174      0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643332     1  0.4174      0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643333     1  0.4174      0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643334     1  0.4089      0.470 0.632 0.000 0.012 0.000 0.004 0.352
#> SRR1643335     1  0.4089      0.470 0.632 0.000 0.012 0.000 0.004 0.352
#> SRR1643336     1  0.4174      0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643337     1  0.4174      0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643338     1  0.4174      0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643339     1  0.4174      0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643340     1  0.4174      0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643341     1  0.4174      0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643342     1  0.4174      0.469 0.628 0.000 0.016 0.000 0.004 0.352
#> SRR1643343     6  0.6373      0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643344     6  0.6373      0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643345     6  0.6373      0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643346     6  0.6373      0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643347     6  0.6373      0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643348     6  0.6373      0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643349     6  0.6373      0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643350     6  0.6373      0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643351     6  0.6373      0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643352     6  0.6373      0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643353     6  0.6373      0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643354     6  0.6373      0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643355     6  0.6373      0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643356     6  0.6373      0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643357     6  0.6373      0.167 0.260 0.000 0.008 0.044 0.148 0.540
#> SRR1643358     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643359     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643360     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643361     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643362     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643363     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643364     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643365     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643366     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643367     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643368     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643369     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643370     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643371     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643372     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643373     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643374     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643375     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643376     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643377     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643378     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643379     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643380     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643381     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643382     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643383     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643384     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643385     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643386     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643387     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643388     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643389     4  0.0000      0.774 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643390     1  0.4730      0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643391     1  0.4730      0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643392     1  0.4730      0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643393     1  0.4730      0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643394     1  0.4730      0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643395     1  0.4730      0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643396     1  0.4730      0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643397     1  0.4730      0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643398     1  0.4730      0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643399     1  0.4730      0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643400     1  0.4730      0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643401     1  0.4730      0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643402     1  0.4730      0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643403     1  0.4730      0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643404     1  0.4730      0.328 0.496 0.000 0.016 0.000 0.020 0.468
#> SRR1643405     6  0.4731     -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643406     6  0.4731     -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643407     6  0.4731     -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643408     6  0.4731     -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643409     6  0.4731     -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643410     6  0.4731     -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643411     6  0.4731     -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643412     6  0.4731     -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643413     6  0.4731     -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643414     6  0.4731     -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643415     6  0.4731     -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643416     6  0.4731     -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643417     6  0.4731     -0.306 0.472 0.000 0.016 0.000 0.020 0.492
#> SRR1643418     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643419     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643420     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643421     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643422     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643423     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643424     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643425     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643426     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643427     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643428     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643429     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643430     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643431     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643432     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643433     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643434     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643435     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643436     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643437     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643438     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643439     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643440     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643441     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643442     5  0.3828      0.701 0.000 0.000 0.000 0.440 0.560 0.000
#> SRR1643443     2  0.2554      0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643444     2  0.2554      0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643445     2  0.2554      0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643446     2  0.2554      0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643447     2  0.2554      0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643448     2  0.2554      0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643449     2  0.2554      0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643450     2  0.2554      0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643451     2  0.2554      0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643452     2  0.2554      0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643453     2  0.2554      0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643454     2  0.2554      0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643455     2  0.2554      0.941 0.000 0.876 0.000 0.000 0.076 0.048
#> SRR1643456     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643457     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643458     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643459     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643460     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643461     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643462     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643463     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643464     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643466     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643467     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643468     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643469     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643470     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643471     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643472     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643473     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643474     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643475     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643477     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643478     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643479     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643480     2  0.0405      0.955 0.000 0.988 0.000 0.000 0.004 0.008
#> SRR1643481     2  0.0146      0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643482     2  0.0146      0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643483     2  0.0146      0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643484     2  0.0146      0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643485     2  0.0146      0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643486     2  0.0146      0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643487     2  0.0146      0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643488     2  0.0146      0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643489     2  0.0146      0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643490     2  0.0146      0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643491     2  0.0146      0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643492     2  0.0146      0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643493     2  0.0146      0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643494     2  0.0146      0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643495     2  0.0146      0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643496     2  0.0146      0.956 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643497     2  0.0806      0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643498     2  0.0806      0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643499     2  0.0806      0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643500     2  0.0806      0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643501     2  0.0806      0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643502     2  0.0806      0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643503     2  0.0806      0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643504     2  0.0806      0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643505     2  0.1480      0.955 0.000 0.940 0.000 0.000 0.040 0.020
#> SRR1643506     2  0.0806      0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643507     2  0.0806      0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643508     2  0.0806      0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643509     2  0.0806      0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643510     2  0.0806      0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643511     2  0.0806      0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643512     2  0.0806      0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643513     2  0.0806      0.955 0.000 0.972 0.000 0.000 0.020 0.008
#> SRR1643531     2  0.2433      0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643532     2  0.2433      0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643533     2  0.2433      0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643534     2  0.2433      0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643535     2  0.2433      0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643536     2  0.2433      0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643537     2  0.2433      0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643538     2  0.2433      0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643539     2  0.2433      0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643540     2  0.2433      0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643541     2  0.2433      0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643542     2  0.2433      0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643543     2  0.2433      0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643544     2  0.2433      0.941 0.000 0.884 0.000 0.000 0.072 0.044
#> SRR1643514     2  0.1789      0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643515     2  0.1789      0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643516     2  0.1789      0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643517     2  0.1789      0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643518     2  0.1789      0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643519     2  0.1789      0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643520     2  0.1789      0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643521     2  0.1789      0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643522     2  0.1789      0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643523     2  0.1789      0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643524     2  0.1789      0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643525     2  0.1789      0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643526     2  0.1789      0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643527     2  0.1789      0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643528     2  0.1789      0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643529     2  0.1789      0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643530     2  0.1789      0.951 0.000 0.924 0.000 0.000 0.044 0.032
#> SRR1643545     2  0.0260      0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643546     2  0.0260      0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643547     2  0.0260      0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643548     2  0.0260      0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643549     2  0.0260      0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643550     2  0.0260      0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643551     2  0.0260      0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643552     2  0.0260      0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643553     2  0.0260      0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643554     2  0.0260      0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643555     2  0.0260      0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643556     2  0.0260      0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643558     2  0.0260      0.955 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643559     2  0.2119      0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643560     2  0.2119      0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643561     2  0.2119      0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643562     2  0.2119      0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643563     2  0.2119      0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643564     2  0.2119      0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643565     2  0.2119      0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643566     2  0.2119      0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643567     2  0.2119      0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643568     2  0.2119      0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643569     2  0.2119      0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643570     2  0.2119      0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643571     2  0.2119      0.947 0.000 0.904 0.000 0.000 0.060 0.036
#> SRR1643572     2  0.2119      0.947 0.000 0.904 0.000 0.000 0.060 0.036

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-CV-skmeans-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-CV-skmeans-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-CV-skmeans-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-CV-skmeans-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-CV-skmeans-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-CV-skmeans-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-CV-skmeans-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-CV-skmeans-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-CV-skmeans-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-CV-skmeans-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-CV-skmeans-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-CV-skmeans-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-CV-skmeans-get-signatures-3

get_signatures(res, k = 5)

plot of chunk tab-CV-skmeans-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-CV-skmeans-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-CV-skmeans-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-CV-skmeans-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-CV-skmeans-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)

plot of chunk tab-CV-skmeans-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-CV-skmeans-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk CV-skmeans-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-CV-skmeans-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-CV-skmeans-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-CV-skmeans-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-CV-skmeans-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-CV-skmeans-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk CV-skmeans-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


CV:pam**

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["CV", "pam"]
# you can also extract it by
# res = res_list["CV:pam"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'CV' method.
#>   Subgroups are detected by 'pam' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 3.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk CV-pam-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk CV-pam-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000         0.4350 0.566   0.566
#> 3 3 1.000           0.987       0.987         0.2995 0.874   0.777
#> 4 4 0.726           0.709       0.779         0.2056 0.846   0.649
#> 5 5 0.798           0.815       0.902         0.0830 0.836   0.518
#> 6 6 0.809           0.836       0.868         0.0726 0.972   0.878

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 3
#> attr(,"optional")
#> [1] 2

There is also optional best \(k\) = 2 that is worth to check.

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1 p2    p3
#> SRR1643167     1  0.0424      0.982 0.992  0 0.008
#> SRR1643168     1  0.0424      0.982 0.992  0 0.008
#> SRR1643169     1  0.0424      0.982 0.992  0 0.008
#> SRR1643170     1  0.0424      0.982 0.992  0 0.008
#> SRR1643171     1  0.0424      0.982 0.992  0 0.008
#> SRR1643172     1  0.0424      0.982 0.992  0 0.008
#> SRR1643173     1  0.0424      0.982 0.992  0 0.008
#> SRR1643174     1  0.0424      0.982 0.992  0 0.008
#> SRR1643175     1  0.0424      0.982 0.992  0 0.008
#> SRR1643176     1  0.0424      0.982 0.992  0 0.008
#> SRR1643177     1  0.0424      0.982 0.992  0 0.008
#> SRR1643178     1  0.0424      0.982 0.992  0 0.008
#> SRR1643180     1  0.0424      0.982 0.992  0 0.008
#> SRR1643181     1  0.0424      0.982 0.992  0 0.008
#> SRR1643182     1  0.0424      0.982 0.992  0 0.008
#> SRR1643183     1  0.0424      0.982 0.992  0 0.008
#> SRR1643184     1  0.0424      0.982 0.992  0 0.008
#> SRR1643185     1  0.0424      0.982 0.992  0 0.008
#> SRR1643186     1  0.0424      0.982 0.992  0 0.008
#> SRR1643187     1  0.0424      0.982 0.992  0 0.008
#> SRR1643188     1  0.0424      0.982 0.992  0 0.008
#> SRR1643189     1  0.0424      0.982 0.992  0 0.008
#> SRR1643190     1  0.0424      0.982 0.992  0 0.008
#> SRR1643191     1  0.0424      0.982 0.992  0 0.008
#> SRR1643192     1  0.0424      0.982 0.992  0 0.008
#> SRR1643193     1  0.0424      0.982 0.992  0 0.008
#> SRR1643194     1  0.0424      0.982 0.992  0 0.008
#> SRR1643195     1  0.0424      0.982 0.992  0 0.008
#> SRR1643196     1  0.0424      0.982 0.992  0 0.008
#> SRR1643197     1  0.0424      0.982 0.992  0 0.008
#> SRR1643198     1  0.0424      0.982 0.992  0 0.008
#> SRR1643199     1  0.0424      0.982 0.992  0 0.008
#> SRR1643200     1  0.0424      0.982 0.992  0 0.008
#> SRR1643201     1  0.0424      0.982 0.992  0 0.008
#> SRR1643202     1  0.0424      0.982 0.992  0 0.008
#> SRR1643203     1  0.0424      0.982 0.992  0 0.008
#> SRR1643204     1  0.0424      0.982 0.992  0 0.008
#> SRR1643205     3  0.1031      0.998 0.024  0 0.976
#> SRR1643206     3  0.1031      0.998 0.024  0 0.976
#> SRR1643207     3  0.1031      0.998 0.024  0 0.976
#> SRR1643208     3  0.1031      0.998 0.024  0 0.976
#> SRR1643209     3  0.1031      0.998 0.024  0 0.976
#> SRR1643210     3  0.1031      0.998 0.024  0 0.976
#> SRR1643211     3  0.1031      0.998 0.024  0 0.976
#> SRR1643212     3  0.1031      0.998 0.024  0 0.976
#> SRR1643213     3  0.1031      0.998 0.024  0 0.976
#> SRR1643214     3  0.1031      0.998 0.024  0 0.976
#> SRR1643215     3  0.1031      0.998 0.024  0 0.976
#> SRR1643216     3  0.1031      0.998 0.024  0 0.976
#> SRR1643217     3  0.1031      0.998 0.024  0 0.976
#> SRR1643218     3  0.1031      0.998 0.024  0 0.976
#> SRR1643219     3  0.1031      0.998 0.024  0 0.976
#> SRR1643220     3  0.1031      0.998 0.024  0 0.976
#> SRR1643221     3  0.1031      0.998 0.024  0 0.976
#> SRR1643222     3  0.1031      0.998 0.024  0 0.976
#> SRR1643223     3  0.1031      0.998 0.024  0 0.976
#> SRR1643224     3  0.1031      0.998 0.024  0 0.976
#> SRR1643225     3  0.1031      0.998 0.024  0 0.976
#> SRR1643226     3  0.1031      0.998 0.024  0 0.976
#> SRR1643227     3  0.1031      0.998 0.024  0 0.976
#> SRR1643228     3  0.1031      0.998 0.024  0 0.976
#> SRR1643229     3  0.1031      0.998 0.024  0 0.976
#> SRR1643230     3  0.1031      0.998 0.024  0 0.976
#> SRR1643231     3  0.1031      0.998 0.024  0 0.976
#> SRR1643232     3  0.1031      0.998 0.024  0 0.976
#> SRR1643233     3  0.1031      0.998 0.024  0 0.976
#> SRR1643234     3  0.1031      0.998 0.024  0 0.976
#> SRR1643235     3  0.1031      0.998 0.024  0 0.976
#> SRR1643236     3  0.1031      0.998 0.024  0 0.976
#> SRR1643237     3  0.1031      0.998 0.024  0 0.976
#> SRR1643238     3  0.1031      0.998 0.024  0 0.976
#> SRR1643239     3  0.1031      0.998 0.024  0 0.976
#> SRR1643240     3  0.1031      0.998 0.024  0 0.976
#> SRR1643241     3  0.1031      0.998 0.024  0 0.976
#> SRR1643242     3  0.1031      0.998 0.024  0 0.976
#> SRR1643243     3  0.1031      0.998 0.024  0 0.976
#> SRR1643245     3  0.1031      0.998 0.024  0 0.976
#> SRR1643246     3  0.1031      0.998 0.024  0 0.976
#> SRR1643247     3  0.1031      0.998 0.024  0 0.976
#> SRR1643248     3  0.1031      0.998 0.024  0 0.976
#> SRR1643249     3  0.3116      0.893 0.108  0 0.892
#> SRR1643250     1  0.1031      0.978 0.976  0 0.024
#> SRR1643251     1  0.0747      0.980 0.984  0 0.016
#> SRR1643252     1  0.1031      0.978 0.976  0 0.024
#> SRR1643253     1  0.1031      0.978 0.976  0 0.024
#> SRR1643254     1  0.1031      0.978 0.976  0 0.024
#> SRR1643255     1  0.0892      0.979 0.980  0 0.020
#> SRR1643256     1  0.0592      0.980 0.988  0 0.012
#> SRR1643257     1  0.0892      0.979 0.980  0 0.020
#> SRR1643258     1  0.1031      0.978 0.976  0 0.024
#> SRR1643259     1  0.0747      0.980 0.984  0 0.016
#> SRR1643260     1  0.1031      0.978 0.976  0 0.024
#> SRR1643261     1  0.0892      0.979 0.980  0 0.020
#> SRR1643262     1  0.1031      0.978 0.976  0 0.024
#> SRR1643263     1  0.1031      0.978 0.976  0 0.024
#> SRR1643264     1  0.1031      0.978 0.976  0 0.024
#> SRR1643266     1  0.1031      0.978 0.976  0 0.024
#> SRR1643267     1  0.1031      0.978 0.976  0 0.024
#> SRR1643268     1  0.1031      0.978 0.976  0 0.024
#> SRR1643269     1  0.1031      0.978 0.976  0 0.024
#> SRR1643270     1  0.1031      0.978 0.976  0 0.024
#> SRR1643271     1  0.1031      0.978 0.976  0 0.024
#> SRR1643272     1  0.1031      0.978 0.976  0 0.024
#> SRR1643273     1  0.0424      0.982 0.992  0 0.008
#> SRR1643274     1  0.0424      0.982 0.992  0 0.008
#> SRR1643275     1  0.0424      0.982 0.992  0 0.008
#> SRR1643276     1  0.0424      0.982 0.992  0 0.008
#> SRR1643277     1  0.0424      0.982 0.992  0 0.008
#> SRR1643278     1  0.0424      0.982 0.992  0 0.008
#> SRR1643279     1  0.0424      0.982 0.992  0 0.008
#> SRR1643280     1  0.0424      0.982 0.992  0 0.008
#> SRR1643281     1  0.0424      0.982 0.992  0 0.008
#> SRR1643282     1  0.0424      0.982 0.992  0 0.008
#> SRR1643283     1  0.0424      0.982 0.992  0 0.008
#> SRR1643284     1  0.0424      0.982 0.992  0 0.008
#> SRR1643285     1  0.0424      0.982 0.992  0 0.008
#> SRR1643286     1  0.0424      0.982 0.992  0 0.008
#> SRR1643287     1  0.1031      0.978 0.976  0 0.024
#> SRR1643288     1  0.1031      0.978 0.976  0 0.024
#> SRR1643289     1  0.1031      0.978 0.976  0 0.024
#> SRR1643290     1  0.1031      0.978 0.976  0 0.024
#> SRR1643291     1  0.1031      0.978 0.976  0 0.024
#> SRR1643292     1  0.1031      0.978 0.976  0 0.024
#> SRR1643293     1  0.1031      0.978 0.976  0 0.024
#> SRR1643294     1  0.1031      0.978 0.976  0 0.024
#> SRR1643295     1  0.1031      0.978 0.976  0 0.024
#> SRR1643296     1  0.1031      0.978 0.976  0 0.024
#> SRR1643297     1  0.1031      0.978 0.976  0 0.024
#> SRR1643298     1  0.1031      0.978 0.976  0 0.024
#> SRR1643299     1  0.1031      0.978 0.976  0 0.024
#> SRR1643300     1  0.1031      0.978 0.976  0 0.024
#> SRR1643301     1  0.0237      0.982 0.996  0 0.004
#> SRR1643302     1  0.0424      0.982 0.992  0 0.008
#> SRR1643303     1  0.0424      0.982 0.992  0 0.008
#> SRR1643304     1  0.0424      0.982 0.992  0 0.008
#> SRR1643305     1  0.0424      0.982 0.992  0 0.008
#> SRR1643306     1  0.0237      0.982 0.996  0 0.004
#> SRR1643307     1  0.0237      0.982 0.996  0 0.004
#> SRR1643308     1  0.0237      0.982 0.996  0 0.004
#> SRR1643309     1  0.0237      0.982 0.996  0 0.004
#> SRR1643310     1  0.0424      0.982 0.992  0 0.008
#> SRR1643311     1  0.0424      0.982 0.992  0 0.008
#> SRR1643312     1  0.0424      0.982 0.992  0 0.008
#> SRR1643313     1  0.0424      0.982 0.992  0 0.008
#> SRR1643314     1  0.0424      0.982 0.992  0 0.008
#> SRR1643315     1  0.0424      0.982 0.992  0 0.008
#> SRR1643316     1  0.0424      0.982 0.992  0 0.008
#> SRR1643317     1  0.0424      0.982 0.992  0 0.008
#> SRR1643318     1  0.0424      0.982 0.992  0 0.008
#> SRR1643319     1  0.0424      0.982 0.992  0 0.008
#> SRR1643320     1  0.0424      0.982 0.992  0 0.008
#> SRR1643321     1  0.0424      0.982 0.992  0 0.008
#> SRR1643322     1  0.0424      0.982 0.992  0 0.008
#> SRR1643323     1  0.0424      0.982 0.992  0 0.008
#> SRR1643324     1  0.0424      0.982 0.992  0 0.008
#> SRR1643325     1  0.0424      0.982 0.992  0 0.008
#> SRR1643326     1  0.0424      0.982 0.992  0 0.008
#> SRR1643327     1  0.0424      0.982 0.992  0 0.008
#> SRR1643328     1  0.1411      0.966 0.964  0 0.036
#> SRR1643329     1  0.1289      0.969 0.968  0 0.032
#> SRR1643330     1  0.1163      0.972 0.972  0 0.028
#> SRR1643331     1  0.1163      0.972 0.972  0 0.028
#> SRR1643332     1  0.1411      0.966 0.964  0 0.036
#> SRR1643333     1  0.1031      0.974 0.976  0 0.024
#> SRR1643334     1  0.1031      0.974 0.976  0 0.024
#> SRR1643335     1  0.0747      0.979 0.984  0 0.016
#> SRR1643336     1  0.0747      0.979 0.984  0 0.016
#> SRR1643337     1  0.1289      0.969 0.968  0 0.032
#> SRR1643338     1  0.1289      0.969 0.968  0 0.032
#> SRR1643339     1  0.1529      0.963 0.960  0 0.040
#> SRR1643340     1  0.1529      0.963 0.960  0 0.040
#> SRR1643341     1  0.1411      0.966 0.964  0 0.036
#> SRR1643342     1  0.1163      0.972 0.972  0 0.028
#> SRR1643343     1  0.0424      0.982 0.992  0 0.008
#> SRR1643344     1  0.0424      0.982 0.992  0 0.008
#> SRR1643345     1  0.0424      0.982 0.992  0 0.008
#> SRR1643346     1  0.0424      0.982 0.992  0 0.008
#> SRR1643347     1  0.0424      0.982 0.992  0 0.008
#> SRR1643348     1  0.0424      0.982 0.992  0 0.008
#> SRR1643349     1  0.0424      0.982 0.992  0 0.008
#> SRR1643350     1  0.0424      0.982 0.992  0 0.008
#> SRR1643351     1  0.0237      0.982 0.996  0 0.004
#> SRR1643352     1  0.0424      0.982 0.992  0 0.008
#> SRR1643353     1  0.0237      0.982 0.996  0 0.004
#> SRR1643354     1  0.0424      0.982 0.992  0 0.008
#> SRR1643355     1  0.0424      0.982 0.992  0 0.008
#> SRR1643356     1  0.0424      0.982 0.992  0 0.008
#> SRR1643357     1  0.0424      0.982 0.992  0 0.008
#> SRR1643358     1  0.1031      0.978 0.976  0 0.024
#> SRR1643359     1  0.1031      0.978 0.976  0 0.024
#> SRR1643360     1  0.1031      0.978 0.976  0 0.024
#> SRR1643361     1  0.1031      0.978 0.976  0 0.024
#> SRR1643362     1  0.1031      0.978 0.976  0 0.024
#> SRR1643363     1  0.1031      0.978 0.976  0 0.024
#> SRR1643364     1  0.1031      0.978 0.976  0 0.024
#> SRR1643365     1  0.1031      0.978 0.976  0 0.024
#> SRR1643366     1  0.1031      0.978 0.976  0 0.024
#> SRR1643367     1  0.1031      0.978 0.976  0 0.024
#> SRR1643368     1  0.1031      0.978 0.976  0 0.024
#> SRR1643369     1  0.1031      0.978 0.976  0 0.024
#> SRR1643370     1  0.1031      0.978 0.976  0 0.024
#> SRR1643371     1  0.1031      0.978 0.976  0 0.024
#> SRR1643372     1  0.1031      0.978 0.976  0 0.024
#> SRR1643373     1  0.1031      0.978 0.976  0 0.024
#> SRR1643374     1  0.1031      0.978 0.976  0 0.024
#> SRR1643375     1  0.1031      0.978 0.976  0 0.024
#> SRR1643376     1  0.1031      0.978 0.976  0 0.024
#> SRR1643377     1  0.1031      0.978 0.976  0 0.024
#> SRR1643378     1  0.1031      0.978 0.976  0 0.024
#> SRR1643379     1  0.1031      0.978 0.976  0 0.024
#> SRR1643380     1  0.1031      0.978 0.976  0 0.024
#> SRR1643381     1  0.1031      0.978 0.976  0 0.024
#> SRR1643382     1  0.1031      0.978 0.976  0 0.024
#> SRR1643383     1  0.1031      0.978 0.976  0 0.024
#> SRR1643384     1  0.1031      0.978 0.976  0 0.024
#> SRR1643385     1  0.1031      0.978 0.976  0 0.024
#> SRR1643386     1  0.1031      0.978 0.976  0 0.024
#> SRR1643387     1  0.1031      0.978 0.976  0 0.024
#> SRR1643388     1  0.1031      0.978 0.976  0 0.024
#> SRR1643389     1  0.1031      0.978 0.976  0 0.024
#> SRR1643390     1  0.0592      0.981 0.988  0 0.012
#> SRR1643391     1  0.0424      0.982 0.992  0 0.008
#> SRR1643392     1  0.1163      0.972 0.972  0 0.028
#> SRR1643393     1  0.0892      0.977 0.980  0 0.020
#> SRR1643394     1  0.0424      0.982 0.992  0 0.008
#> SRR1643395     1  0.1031      0.974 0.976  0 0.024
#> SRR1643396     1  0.0747      0.979 0.984  0 0.016
#> SRR1643397     1  0.0747      0.979 0.984  0 0.016
#> SRR1643398     1  0.0424      0.982 0.992  0 0.008
#> SRR1643399     1  0.1031      0.974 0.976  0 0.024
#> SRR1643400     1  0.0747      0.979 0.984  0 0.016
#> SRR1643401     1  0.1031      0.974 0.976  0 0.024
#> SRR1643402     1  0.0424      0.982 0.992  0 0.008
#> SRR1643403     1  0.0424      0.982 0.992  0 0.008
#> SRR1643404     1  0.0424      0.982 0.992  0 0.008
#> SRR1643405     1  0.1753      0.956 0.952  0 0.048
#> SRR1643406     1  0.1643      0.959 0.956  0 0.044
#> SRR1643407     1  0.1643      0.959 0.956  0 0.044
#> SRR1643408     1  0.1753      0.956 0.952  0 0.048
#> SRR1643409     1  0.1753      0.956 0.952  0 0.048
#> SRR1643410     1  0.1643      0.959 0.956  0 0.044
#> SRR1643411     1  0.1753      0.956 0.952  0 0.048
#> SRR1643412     1  0.1643      0.959 0.956  0 0.044
#> SRR1643413     1  0.1643      0.959 0.956  0 0.044
#> SRR1643414     1  0.1643      0.959 0.956  0 0.044
#> SRR1643415     1  0.1753      0.956 0.952  0 0.048
#> SRR1643416     1  0.1753      0.956 0.952  0 0.048
#> SRR1643417     1  0.1753      0.956 0.952  0 0.048
#> SRR1643418     1  0.1031      0.978 0.976  0 0.024
#> SRR1643419     1  0.1031      0.978 0.976  0 0.024
#> SRR1643420     1  0.1031      0.978 0.976  0 0.024
#> SRR1643421     1  0.1031      0.978 0.976  0 0.024
#> SRR1643422     1  0.1031      0.978 0.976  0 0.024
#> SRR1643423     1  0.1031      0.978 0.976  0 0.024
#> SRR1643424     1  0.1031      0.978 0.976  0 0.024
#> SRR1643425     1  0.1031      0.978 0.976  0 0.024
#> SRR1643426     1  0.1031      0.978 0.976  0 0.024
#> SRR1643427     1  0.1031      0.978 0.976  0 0.024
#> SRR1643428     1  0.1031      0.978 0.976  0 0.024
#> SRR1643429     1  0.1031      0.978 0.976  0 0.024
#> SRR1643430     1  0.1031      0.978 0.976  0 0.024
#> SRR1643431     1  0.1031      0.978 0.976  0 0.024
#> SRR1643432     1  0.1031      0.978 0.976  0 0.024
#> SRR1643433     1  0.1031      0.978 0.976  0 0.024
#> SRR1643434     1  0.1031      0.978 0.976  0 0.024
#> SRR1643435     1  0.1031      0.978 0.976  0 0.024
#> SRR1643436     1  0.1031      0.978 0.976  0 0.024
#> SRR1643437     1  0.1031      0.978 0.976  0 0.024
#> SRR1643438     1  0.1031      0.978 0.976  0 0.024
#> SRR1643439     1  0.1031      0.978 0.976  0 0.024
#> SRR1643440     1  0.1031      0.978 0.976  0 0.024
#> SRR1643441     1  0.1031      0.978 0.976  0 0.024
#> SRR1643442     1  0.1031      0.978 0.976  0 0.024
#> SRR1643443     2  0.0000      1.000 0.000  1 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1 0.000
#> SRR1643505     2  0.0000      1.000 0.000  1 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1 0.000

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1    p2    p3    p4
#> SRR1643167     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643168     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643169     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643170     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643171     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643172     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643173     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643174     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643175     4  0.4972    -0.8181 0.456 0.000 0.000 0.544
#> SRR1643176     4  0.4972    -0.8181 0.456 0.000 0.000 0.544
#> SRR1643177     4  0.4972    -0.8181 0.456 0.000 0.000 0.544
#> SRR1643178     4  0.4972    -0.8181 0.456 0.000 0.000 0.544
#> SRR1643180     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643181     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643182     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643183     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643184     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643185     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643186     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643187     4  0.4500    -0.2330 0.316 0.000 0.000 0.684
#> SRR1643188     4  0.4500    -0.2330 0.316 0.000 0.000 0.684
#> SRR1643189     4  0.4500    -0.2330 0.316 0.000 0.000 0.684
#> SRR1643190     4  0.4500    -0.2330 0.316 0.000 0.000 0.684
#> SRR1643191     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643192     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643193     4  0.4477    -0.2134 0.312 0.000 0.000 0.688
#> SRR1643194     4  0.4477    -0.2134 0.312 0.000 0.000 0.688
#> SRR1643195     4  0.4382    -0.1431 0.296 0.000 0.000 0.704
#> SRR1643196     4  0.4382    -0.1431 0.296 0.000 0.000 0.704
#> SRR1643197     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643198     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643199     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643200     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643201     4  0.4431    -0.1775 0.304 0.000 0.000 0.696
#> SRR1643202     4  0.4431    -0.1775 0.304 0.000 0.000 0.696
#> SRR1643203     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643204     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643205     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643206     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643207     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643208     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643209     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643210     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643211     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643212     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643213     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643214     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643215     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643216     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643217     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643218     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643219     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643220     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643221     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643222     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643223     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643224     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643225     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643226     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643227     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643228     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643229     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643230     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643231     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643232     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643233     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643234     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643235     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643236     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643237     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643238     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643239     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643240     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643241     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643242     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643243     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643245     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643246     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643247     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643248     3  0.0000     0.9935 0.000 0.000 1.000 0.000
#> SRR1643249     3  0.5280     0.6421 0.128 0.000 0.752 0.120
#> SRR1643250     4  0.0469     0.5704 0.012 0.000 0.000 0.988
#> SRR1643251     4  0.0707     0.5618 0.020 0.000 0.000 0.980
#> SRR1643252     4  0.0469     0.5704 0.012 0.000 0.000 0.988
#> SRR1643253     4  0.0469     0.5704 0.012 0.000 0.000 0.988
#> SRR1643254     4  0.0469     0.5704 0.012 0.000 0.000 0.988
#> SRR1643255     4  0.0592     0.5663 0.016 0.000 0.000 0.984
#> SRR1643256     4  0.1211     0.5385 0.040 0.000 0.000 0.960
#> SRR1643257     4  0.0592     0.5663 0.016 0.000 0.000 0.984
#> SRR1643258     4  0.0469     0.5704 0.012 0.000 0.000 0.988
#> SRR1643259     4  0.0817     0.5576 0.024 0.000 0.000 0.976
#> SRR1643260     4  0.0469     0.5704 0.012 0.000 0.000 0.988
#> SRR1643261     4  0.0592     0.5663 0.016 0.000 0.000 0.984
#> SRR1643262     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643263     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643264     4  0.0336     0.5737 0.008 0.000 0.000 0.992
#> SRR1643266     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643267     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643268     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643269     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643270     4  0.0188     0.5767 0.004 0.000 0.000 0.996
#> SRR1643271     4  0.0188     0.5767 0.004 0.000 0.000 0.996
#> SRR1643272     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643273     4  0.4222    -0.0284 0.272 0.000 0.000 0.728
#> SRR1643274     4  0.4250    -0.0466 0.276 0.000 0.000 0.724
#> SRR1643275     4  0.4222    -0.0284 0.272 0.000 0.000 0.728
#> SRR1643276     4  0.4222    -0.0284 0.272 0.000 0.000 0.728
#> SRR1643277     4  0.4277    -0.0664 0.280 0.000 0.000 0.720
#> SRR1643278     4  0.4222    -0.0284 0.272 0.000 0.000 0.728
#> SRR1643279     4  0.4193    -0.0116 0.268 0.000 0.000 0.732
#> SRR1643280     4  0.4193    -0.0116 0.268 0.000 0.000 0.732
#> SRR1643281     4  0.4222    -0.0284 0.272 0.000 0.000 0.728
#> SRR1643282     4  0.4222    -0.0284 0.272 0.000 0.000 0.728
#> SRR1643283     4  0.4277    -0.0664 0.280 0.000 0.000 0.720
#> SRR1643284     4  0.4250    -0.0467 0.276 0.000 0.000 0.724
#> SRR1643285     4  0.4222    -0.0284 0.272 0.000 0.000 0.728
#> SRR1643286     4  0.4250    -0.0466 0.276 0.000 0.000 0.724
#> SRR1643287     4  0.4500     0.5229 0.316 0.000 0.000 0.684
#> SRR1643288     4  0.4817     0.5042 0.388 0.000 0.000 0.612
#> SRR1643289     4  0.4830     0.5026 0.392 0.000 0.000 0.608
#> SRR1643290     4  0.4776     0.5057 0.376 0.000 0.000 0.624
#> SRR1643291     4  0.4817     0.5041 0.388 0.000 0.000 0.612
#> SRR1643292     4  0.4454     0.5246 0.308 0.000 0.000 0.692
#> SRR1643293     4  0.4250     0.5301 0.276 0.000 0.000 0.724
#> SRR1643294     4  0.3873     0.5371 0.228 0.000 0.000 0.772
#> SRR1643295     4  0.4790     0.5051 0.380 0.000 0.000 0.620
#> SRR1643296     4  0.4730     0.5117 0.364 0.000 0.000 0.636
#> SRR1643297     4  0.4746     0.5106 0.368 0.000 0.000 0.632
#> SRR1643298     4  0.4790     0.5035 0.380 0.000 0.000 0.620
#> SRR1643299     4  0.4543     0.5214 0.324 0.000 0.000 0.676
#> SRR1643300     4  0.4605     0.5186 0.336 0.000 0.000 0.664
#> SRR1643301     4  0.4454    -0.1949 0.308 0.000 0.000 0.692
#> SRR1643302     4  0.4454    -0.1947 0.308 0.000 0.000 0.692
#> SRR1643303     4  0.4356    -0.1229 0.292 0.000 0.000 0.708
#> SRR1643304     4  0.4431    -0.1775 0.304 0.000 0.000 0.696
#> SRR1643305     4  0.4454    -0.1953 0.308 0.000 0.000 0.692
#> SRR1643306     4  0.4331    -0.1040 0.288 0.000 0.000 0.712
#> SRR1643307     4  0.4382    -0.1388 0.296 0.000 0.000 0.704
#> SRR1643308     4  0.4382    -0.1422 0.296 0.000 0.000 0.704
#> SRR1643309     4  0.4331    -0.1040 0.288 0.000 0.000 0.712
#> SRR1643310     4  0.4406    -0.1602 0.300 0.000 0.000 0.700
#> SRR1643311     4  0.4406    -0.1602 0.300 0.000 0.000 0.700
#> SRR1643312     4  0.4454    -0.1953 0.308 0.000 0.000 0.692
#> SRR1643313     4  0.4406    -0.1579 0.300 0.000 0.000 0.700
#> SRR1643314     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643315     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643316     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643317     1  0.4992     0.9893 0.524 0.000 0.000 0.476
#> SRR1643318     1  0.4992     0.9893 0.524 0.000 0.000 0.476
#> SRR1643319     1  0.4999     0.9510 0.508 0.000 0.000 0.492
#> SRR1643320     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643321     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643322     1  0.4994     0.9806 0.520 0.000 0.000 0.480
#> SRR1643323     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643324     1  0.4994     0.9807 0.520 0.000 0.000 0.480
#> SRR1643325     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643326     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643327     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643328     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643329     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643330     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643331     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643332     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643333     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643334     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643335     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643336     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643337     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643338     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643339     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643340     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643341     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643342     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643343     4  0.4996    -0.8902 0.484 0.000 0.000 0.516
#> SRR1643344     1  0.4992     0.9894 0.524 0.000 0.000 0.476
#> SRR1643345     1  0.4992     0.9894 0.524 0.000 0.000 0.476
#> SRR1643346     4  0.4977    -0.8235 0.460 0.000 0.000 0.540
#> SRR1643347     1  0.4992     0.9894 0.524 0.000 0.000 0.476
#> SRR1643348     1  0.4998     0.9620 0.512 0.000 0.000 0.488
#> SRR1643349     4  0.4981    -0.8350 0.464 0.000 0.000 0.536
#> SRR1643350     4  0.5000    -0.9332 0.500 0.000 0.000 0.500
#> SRR1643351     4  0.4972    -0.8113 0.456 0.000 0.000 0.544
#> SRR1643352     1  0.5000     0.9424 0.504 0.000 0.000 0.496
#> SRR1643353     4  0.4994    -0.8809 0.480 0.000 0.000 0.520
#> SRR1643354     4  0.4985    -0.8456 0.468 0.000 0.000 0.532
#> SRR1643355     4  0.4999    -0.9137 0.492 0.000 0.000 0.508
#> SRR1643356     4  0.4998    -0.9029 0.488 0.000 0.000 0.512
#> SRR1643357     1  0.4992     0.9894 0.524 0.000 0.000 0.476
#> SRR1643358     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643359     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643360     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643361     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643362     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643363     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643364     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643365     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643366     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643367     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643368     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643369     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643370     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643371     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643372     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643373     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643374     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643375     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643376     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643377     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643378     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643379     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643380     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643381     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643382     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643383     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643384     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643385     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643386     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643387     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643388     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643389     4  0.0000     0.5796 0.000 0.000 0.000 1.000
#> SRR1643390     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643391     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643392     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643393     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643394     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643395     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643396     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643397     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643398     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643399     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643400     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643401     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643402     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643403     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643404     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643405     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643406     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643407     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643408     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643409     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643410     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643411     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643412     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643413     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643414     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643415     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643416     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643417     1  0.4989     0.9972 0.528 0.000 0.000 0.472
#> SRR1643418     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643419     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643420     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643421     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643422     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643423     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643424     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643425     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643426     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643427     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643428     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643429     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643430     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643431     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643432     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643433     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643434     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643435     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643436     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643437     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643438     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643439     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643440     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643441     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643442     4  0.4605     0.5082 0.336 0.000 0.000 0.664
#> SRR1643443     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643444     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643445     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643446     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643447     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643448     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643449     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643450     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643451     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643452     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643453     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643454     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643455     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643456     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643457     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643458     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643459     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643460     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643461     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643462     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643463     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643464     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643466     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643467     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643468     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643469     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643470     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643471     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643472     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643473     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643474     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643475     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643477     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643478     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643479     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643480     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643481     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643482     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643483     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643484     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643485     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643486     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643487     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643488     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643489     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643490     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643491     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643492     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643493     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643494     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643495     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643496     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643497     2  0.0469     0.9438 0.012 0.988 0.000 0.000
#> SRR1643498     2  0.0188     0.9434 0.004 0.996 0.000 0.000
#> SRR1643499     2  0.0817     0.9438 0.024 0.976 0.000 0.000
#> SRR1643500     2  0.0592     0.9441 0.016 0.984 0.000 0.000
#> SRR1643501     2  0.0707     0.9440 0.020 0.980 0.000 0.000
#> SRR1643502     2  0.0336     0.9435 0.008 0.992 0.000 0.000
#> SRR1643503     2  0.0000     0.9428 0.000 1.000 0.000 0.000
#> SRR1643504     2  0.0188     0.9433 0.004 0.996 0.000 0.000
#> SRR1643505     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643506     2  0.0336     0.9437 0.008 0.992 0.000 0.000
#> SRR1643507     2  0.0336     0.9435 0.008 0.992 0.000 0.000
#> SRR1643508     2  0.0592     0.9439 0.016 0.984 0.000 0.000
#> SRR1643509     2  0.0469     0.9439 0.012 0.988 0.000 0.000
#> SRR1643510     2  0.0817     0.9439 0.024 0.976 0.000 0.000
#> SRR1643511     2  0.1022     0.9437 0.032 0.968 0.000 0.000
#> SRR1643512     2  0.0188     0.9425 0.004 0.996 0.000 0.000
#> SRR1643513     2  0.1022     0.9439 0.032 0.968 0.000 0.000
#> SRR1643531     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643532     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643533     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643534     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643535     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643536     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643537     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643538     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643539     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643540     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643541     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643542     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643543     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643544     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643514     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643515     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643516     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643517     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643518     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643519     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643520     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643521     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643522     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643523     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643524     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643525     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643526     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643527     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643528     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643529     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643530     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643545     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643546     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643547     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643548     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643549     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643550     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643551     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643552     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643553     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643554     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643555     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643556     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643558     2  0.0592     0.9414 0.016 0.984 0.000 0.000
#> SRR1643559     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643560     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643561     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643562     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643563     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643564     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643565     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643566     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643567     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643568     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643569     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643570     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643571     2  0.2647     0.9391 0.120 0.880 0.000 0.000
#> SRR1643572     2  0.2647     0.9391 0.120 0.880 0.000 0.000

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1    p2    p3    p4    p5
#> SRR1643167     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643168     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643169     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643170     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643171     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643172     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643173     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643174     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643175     1  0.2020      0.775 0.900 0.000 0.000 0.100 0.000
#> SRR1643176     1  0.2020      0.775 0.900 0.000 0.000 0.100 0.000
#> SRR1643177     1  0.2020      0.775 0.900 0.000 0.000 0.100 0.000
#> SRR1643178     1  0.2020      0.775 0.900 0.000 0.000 0.100 0.000
#> SRR1643180     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643181     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643182     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643183     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643184     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643185     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643186     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643187     1  0.3210      0.639 0.788 0.000 0.000 0.212 0.000
#> SRR1643188     1  0.3210      0.639 0.788 0.000 0.000 0.212 0.000
#> SRR1643189     1  0.3210      0.639 0.788 0.000 0.000 0.212 0.000
#> SRR1643190     1  0.3210      0.639 0.788 0.000 0.000 0.212 0.000
#> SRR1643191     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643192     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643193     1  0.3210      0.639 0.788 0.000 0.000 0.212 0.000
#> SRR1643194     1  0.3210      0.639 0.788 0.000 0.000 0.212 0.000
#> SRR1643195     1  0.3424      0.589 0.760 0.000 0.000 0.240 0.000
#> SRR1643196     1  0.3424      0.589 0.760 0.000 0.000 0.240 0.000
#> SRR1643197     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643198     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643199     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643200     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643201     1  0.3305      0.620 0.776 0.000 0.000 0.224 0.000
#> SRR1643202     1  0.3305      0.620 0.776 0.000 0.000 0.224 0.000
#> SRR1643203     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643204     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643205     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643206     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643207     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643208     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643209     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643210     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643211     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643212     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643213     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643214     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643215     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643216     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643217     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643218     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643219     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643220     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643221     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643222     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643223     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643224     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643225     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643226     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643227     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643228     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643229     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643230     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643231     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643232     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643233     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643234     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643235     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643236     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643237     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643238     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643239     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643240     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643241     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643242     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643243     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643245     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643246     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643247     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643248     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643249     3  0.3586      0.595 0.264 0.000 0.736 0.000 0.000
#> SRR1643250     4  0.4294      0.545 0.468 0.000 0.000 0.532 0.000
#> SRR1643251     4  0.4297      0.534 0.472 0.000 0.000 0.528 0.000
#> SRR1643252     4  0.4294      0.545 0.468 0.000 0.000 0.532 0.000
#> SRR1643253     4  0.4297      0.535 0.472 0.000 0.000 0.528 0.000
#> SRR1643254     4  0.4291      0.554 0.464 0.000 0.000 0.536 0.000
#> SRR1643255     4  0.4294      0.545 0.468 0.000 0.000 0.532 0.000
#> SRR1643256     1  0.4307     -0.463 0.500 0.000 0.000 0.500 0.000
#> SRR1643257     4  0.4300      0.524 0.476 0.000 0.000 0.524 0.000
#> SRR1643258     4  0.4291      0.554 0.464 0.000 0.000 0.536 0.000
#> SRR1643259     4  0.4302      0.513 0.480 0.000 0.000 0.520 0.000
#> SRR1643260     4  0.4291      0.554 0.464 0.000 0.000 0.536 0.000
#> SRR1643261     4  0.4300      0.524 0.476 0.000 0.000 0.524 0.000
#> SRR1643262     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643263     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643264     4  0.4283      0.571 0.456 0.000 0.000 0.544 0.000
#> SRR1643266     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643267     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643268     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643269     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643270     4  0.4278      0.579 0.452 0.000 0.000 0.548 0.000
#> SRR1643271     4  0.4278      0.579 0.452 0.000 0.000 0.548 0.000
#> SRR1643272     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643273     1  0.3534      0.548 0.744 0.000 0.000 0.256 0.000
#> SRR1643274     1  0.3508      0.558 0.748 0.000 0.000 0.252 0.000
#> SRR1643275     1  0.3534      0.548 0.744 0.000 0.000 0.256 0.000
#> SRR1643276     1  0.3534      0.548 0.744 0.000 0.000 0.256 0.000
#> SRR1643277     1  0.3480      0.568 0.752 0.000 0.000 0.248 0.000
#> SRR1643278     1  0.3534      0.548 0.744 0.000 0.000 0.256 0.000
#> SRR1643279     1  0.3561      0.537 0.740 0.000 0.000 0.260 0.000
#> SRR1643280     1  0.3561      0.537 0.740 0.000 0.000 0.260 0.000
#> SRR1643281     1  0.3534      0.548 0.744 0.000 0.000 0.256 0.000
#> SRR1643282     1  0.3534      0.548 0.744 0.000 0.000 0.256 0.000
#> SRR1643283     1  0.3480      0.568 0.752 0.000 0.000 0.248 0.000
#> SRR1643284     1  0.3508      0.558 0.748 0.000 0.000 0.252 0.000
#> SRR1643285     1  0.3534      0.548 0.744 0.000 0.000 0.256 0.000
#> SRR1643286     1  0.3508      0.558 0.748 0.000 0.000 0.252 0.000
#> SRR1643287     4  0.3074      0.601 0.196 0.000 0.000 0.804 0.000
#> SRR1643288     4  0.2127      0.595 0.108 0.000 0.000 0.892 0.000
#> SRR1643289     4  0.1732      0.577 0.080 0.000 0.000 0.920 0.000
#> SRR1643290     4  0.1341      0.579 0.056 0.000 0.000 0.944 0.000
#> SRR1643291     4  0.1908      0.583 0.092 0.000 0.000 0.908 0.000
#> SRR1643292     4  0.3305      0.600 0.224 0.000 0.000 0.776 0.000
#> SRR1643293     4  0.3661      0.587 0.276 0.000 0.000 0.724 0.000
#> SRR1643294     4  0.3949      0.565 0.332 0.000 0.000 0.668 0.000
#> SRR1643295     4  0.1671      0.580 0.076 0.000 0.000 0.924 0.000
#> SRR1643296     4  0.2230      0.604 0.116 0.000 0.000 0.884 0.000
#> SRR1643297     4  0.2329      0.606 0.124 0.000 0.000 0.876 0.000
#> SRR1643298     4  0.1544      0.588 0.068 0.000 0.000 0.932 0.000
#> SRR1643299     4  0.2966      0.601 0.184 0.000 0.000 0.816 0.000
#> SRR1643300     4  0.2561      0.609 0.144 0.000 0.000 0.856 0.000
#> SRR1643301     1  0.3305      0.620 0.776 0.000 0.000 0.224 0.000
#> SRR1643302     1  0.3274      0.626 0.780 0.000 0.000 0.220 0.000
#> SRR1643303     1  0.3424      0.588 0.760 0.000 0.000 0.240 0.000
#> SRR1643304     1  0.3366      0.605 0.768 0.000 0.000 0.232 0.000
#> SRR1643305     1  0.3274      0.626 0.780 0.000 0.000 0.220 0.000
#> SRR1643306     1  0.3452      0.579 0.756 0.000 0.000 0.244 0.000
#> SRR1643307     1  0.3395      0.596 0.764 0.000 0.000 0.236 0.000
#> SRR1643308     1  0.3395      0.597 0.764 0.000 0.000 0.236 0.000
#> SRR1643309     1  0.3452      0.579 0.756 0.000 0.000 0.244 0.000
#> SRR1643310     1  0.3395      0.597 0.764 0.000 0.000 0.236 0.000
#> SRR1643311     1  0.3395      0.597 0.764 0.000 0.000 0.236 0.000
#> SRR1643312     1  0.3305      0.619 0.776 0.000 0.000 0.224 0.000
#> SRR1643313     1  0.3366      0.605 0.768 0.000 0.000 0.232 0.000
#> SRR1643314     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643315     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643316     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643317     1  0.0162      0.874 0.996 0.000 0.000 0.004 0.000
#> SRR1643318     1  0.0162      0.874 0.996 0.000 0.000 0.004 0.000
#> SRR1643319     1  0.0609      0.864 0.980 0.000 0.000 0.020 0.000
#> SRR1643320     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643321     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643322     1  0.0162      0.874 0.996 0.000 0.000 0.004 0.000
#> SRR1643323     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643324     1  0.0162      0.874 0.996 0.000 0.000 0.004 0.000
#> SRR1643325     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643326     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643327     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643328     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643329     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643330     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643331     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643332     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643333     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643334     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643335     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643336     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643337     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643338     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643339     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643340     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643341     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643342     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643343     1  0.1121      0.840 0.956 0.000 0.000 0.044 0.000
#> SRR1643344     1  0.0162      0.874 0.996 0.000 0.000 0.004 0.000
#> SRR1643345     1  0.0162      0.874 0.996 0.000 0.000 0.004 0.000
#> SRR1643346     1  0.1544      0.814 0.932 0.000 0.000 0.068 0.000
#> SRR1643347     1  0.0162      0.874 0.996 0.000 0.000 0.004 0.000
#> SRR1643348     1  0.0510      0.865 0.984 0.000 0.000 0.016 0.000
#> SRR1643349     1  0.1478      0.819 0.936 0.000 0.000 0.064 0.000
#> SRR1643350     1  0.0794      0.855 0.972 0.000 0.000 0.028 0.000
#> SRR1643351     1  0.1608      0.809 0.928 0.000 0.000 0.072 0.000
#> SRR1643352     1  0.0703      0.859 0.976 0.000 0.000 0.024 0.000
#> SRR1643353     1  0.1197      0.837 0.952 0.000 0.000 0.048 0.000
#> SRR1643354     1  0.1410      0.823 0.940 0.000 0.000 0.060 0.000
#> SRR1643355     1  0.0963      0.849 0.964 0.000 0.000 0.036 0.000
#> SRR1643356     1  0.1043      0.845 0.960 0.000 0.000 0.040 0.000
#> SRR1643357     1  0.0162      0.874 0.996 0.000 0.000 0.004 0.000
#> SRR1643358     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643359     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643360     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643361     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643362     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643363     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643364     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643365     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643366     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643367     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643368     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643369     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643370     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643371     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643372     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643373     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643374     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643375     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643376     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643377     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643378     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643379     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643380     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643381     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643382     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643383     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643384     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643385     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643386     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643387     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643388     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643389     4  0.4273      0.586 0.448 0.000 0.000 0.552 0.000
#> SRR1643390     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643391     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643392     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643393     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643394     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643395     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643396     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643397     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643398     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643399     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643400     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643401     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643402     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643403     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643404     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643405     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643406     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643407     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643408     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643409     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643410     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643411     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643412     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643413     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643414     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643415     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643416     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643417     1  0.0000      0.876 1.000 0.000 0.000 0.000 0.000
#> SRR1643418     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643419     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643420     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643421     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643422     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643423     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643424     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643425     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643426     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643427     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643428     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643429     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643430     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643431     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643432     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643433     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643434     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643435     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643436     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643437     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643438     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643439     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643440     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643441     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643442     4  0.0000      0.571 0.000 0.000 0.000 1.000 0.000
#> SRR1643443     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643444     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643445     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643446     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643447     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643448     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643449     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643450     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643451     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643452     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643453     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643454     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643455     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643456     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643457     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643458     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643459     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643460     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643461     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643462     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643463     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643464     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643466     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643467     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643468     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643469     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643470     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643471     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643472     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643473     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643474     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643475     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643477     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643478     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643479     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643480     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643481     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643482     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643483     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643484     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643485     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643486     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643487     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643488     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643489     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643490     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643491     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643492     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643493     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643494     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643495     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643496     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643497     2  0.2648      0.852 0.000 0.848 0.000 0.000 0.152
#> SRR1643498     2  0.2280      0.882 0.000 0.880 0.000 0.000 0.120
#> SRR1643499     2  0.3424      0.739 0.000 0.760 0.000 0.000 0.240
#> SRR1643500     2  0.2605      0.857 0.000 0.852 0.000 0.000 0.148
#> SRR1643501     2  0.3561      0.707 0.000 0.740 0.000 0.000 0.260
#> SRR1643502     2  0.2074      0.895 0.000 0.896 0.000 0.000 0.104
#> SRR1643503     2  0.1671      0.915 0.000 0.924 0.000 0.000 0.076
#> SRR1643504     2  0.1908      0.904 0.000 0.908 0.000 0.000 0.092
#> SRR1643505     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643506     2  0.2648      0.852 0.000 0.848 0.000 0.000 0.152
#> SRR1643507     2  0.2280      0.882 0.000 0.880 0.000 0.000 0.120
#> SRR1643508     2  0.2732      0.843 0.000 0.840 0.000 0.000 0.160
#> SRR1643509     2  0.2648      0.852 0.000 0.848 0.000 0.000 0.152
#> SRR1643510     2  0.3274      0.769 0.000 0.780 0.000 0.000 0.220
#> SRR1643511     2  0.3242      0.774 0.000 0.784 0.000 0.000 0.216
#> SRR1643512     2  0.1341      0.928 0.000 0.944 0.000 0.000 0.056
#> SRR1643513     2  0.2813      0.835 0.000 0.832 0.000 0.000 0.168
#> SRR1643531     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643532     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643533     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643534     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643535     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643536     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643537     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643538     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643539     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643540     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643541     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643542     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643543     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643544     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643514     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643515     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643516     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643517     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643518     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643519     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643520     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643521     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643522     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643523     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643524     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643525     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643526     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643527     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643528     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643529     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643530     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643545     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643546     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643547     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643548     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643549     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643550     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643551     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643552     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643553     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643554     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643555     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643556     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643558     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643559     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643560     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643561     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643562     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643563     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643564     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643565     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643566     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643567     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643568     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643569     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643570     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643571     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643572     5  0.0000      1.000 0.000 0.000 0.000 0.000 1.000

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2    p3    p4    p5    p6
#> SRR1643167     1  0.0146     0.7250 0.996 0.004 0.000 0.000 0.000 0.000
#> SRR1643168     1  0.0146     0.7250 0.996 0.004 0.000 0.000 0.000 0.000
#> SRR1643169     1  0.0146     0.7250 0.996 0.004 0.000 0.000 0.000 0.000
#> SRR1643170     1  0.0458     0.7269 0.984 0.016 0.000 0.000 0.000 0.000
#> SRR1643171     1  0.0000     0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643172     1  0.0000     0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643173     1  0.0000     0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643174     1  0.0000     0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643175     1  0.2933     0.4713 0.796 0.000 0.000 0.200 0.000 0.004
#> SRR1643176     1  0.2933     0.4713 0.796 0.000 0.000 0.200 0.000 0.004
#> SRR1643177     1  0.2933     0.4713 0.796 0.000 0.000 0.200 0.000 0.004
#> SRR1643178     1  0.3012     0.4685 0.796 0.000 0.000 0.196 0.000 0.008
#> SRR1643180     1  0.0000     0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643181     1  0.0000     0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643182     1  0.0000     0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643183     1  0.0000     0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643184     1  0.0000     0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643185     1  0.0000     0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643186     1  0.0000     0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643187     1  0.2631     0.5283 0.820 0.000 0.000 0.000 0.000 0.180
#> SRR1643188     1  0.2631     0.5283 0.820 0.000 0.000 0.000 0.000 0.180
#> SRR1643189     1  0.2631     0.5283 0.820 0.000 0.000 0.000 0.000 0.180
#> SRR1643190     1  0.2631     0.5283 0.820 0.000 0.000 0.000 0.000 0.180
#> SRR1643191     1  0.0146     0.7231 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643192     1  0.0260     0.7219 0.992 0.000 0.000 0.008 0.000 0.000
#> SRR1643193     1  0.2980     0.5177 0.808 0.000 0.000 0.012 0.000 0.180
#> SRR1643194     1  0.2980     0.5177 0.808 0.000 0.000 0.012 0.000 0.180
#> SRR1643195     1  0.4757     0.1769 0.676 0.000 0.000 0.144 0.000 0.180
#> SRR1643196     1  0.4757     0.1769 0.676 0.000 0.000 0.144 0.000 0.180
#> SRR1643197     1  0.0000     0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643198     1  0.0000     0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643199     1  0.0146     0.7230 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643200     1  0.0260     0.7219 0.992 0.000 0.000 0.008 0.000 0.000
#> SRR1643201     1  0.4328     0.3251 0.720 0.000 0.000 0.100 0.000 0.180
#> SRR1643202     1  0.4328     0.3251 0.720 0.000 0.000 0.100 0.000 0.180
#> SRR1643203     1  0.0000     0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643204     1  0.0000     0.7241 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643205     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643206     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643207     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643208     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643209     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643210     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643211     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643212     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643213     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643214     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643215     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643216     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643217     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643218     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643219     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643220     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643221     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643222     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643223     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643224     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643225     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643226     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643227     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643228     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643229     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643230     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643231     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643232     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643233     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643234     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643235     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643236     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643237     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643238     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643239     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643240     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643241     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643242     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643243     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643245     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643246     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643247     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643248     3  0.0000     0.9932 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643249     3  0.2854     0.6796 0.208 0.000 0.792 0.000 0.000 0.000
#> SRR1643250     4  0.5648     0.9805 0.304 0.000 0.000 0.516 0.000 0.180
#> SRR1643251     4  0.5660     0.9770 0.308 0.000 0.000 0.512 0.000 0.180
#> SRR1643252     4  0.5660     0.9770 0.308 0.000 0.000 0.512 0.000 0.180
#> SRR1643253     4  0.5648     0.9805 0.304 0.000 0.000 0.516 0.000 0.180
#> SRR1643254     4  0.5648     0.9805 0.304 0.000 0.000 0.516 0.000 0.180
#> SRR1643255     4  0.5671     0.9722 0.312 0.000 0.000 0.508 0.000 0.180
#> SRR1643256     4  0.5728     0.9341 0.336 0.000 0.000 0.484 0.000 0.180
#> SRR1643257     4  0.5660     0.9770 0.308 0.000 0.000 0.512 0.000 0.180
#> SRR1643258     4  0.5648     0.9805 0.304 0.000 0.000 0.516 0.000 0.180
#> SRR1643259     4  0.5682     0.9666 0.316 0.000 0.000 0.504 0.000 0.180
#> SRR1643260     4  0.5660     0.9770 0.308 0.000 0.000 0.512 0.000 0.180
#> SRR1643261     4  0.5671     0.9722 0.312 0.000 0.000 0.508 0.000 0.180
#> SRR1643262     4  0.5682     0.9864 0.300 0.000 0.000 0.512 0.000 0.188
#> SRR1643263     4  0.5704     0.9887 0.300 0.000 0.000 0.508 0.000 0.192
#> SRR1643264     4  0.5694     0.9759 0.312 0.000 0.000 0.504 0.000 0.184
#> SRR1643266     4  0.5682     0.9864 0.300 0.000 0.000 0.512 0.000 0.188
#> SRR1643267     4  0.5682     0.9864 0.300 0.000 0.000 0.512 0.000 0.188
#> SRR1643268     4  0.5704     0.9887 0.300 0.000 0.000 0.508 0.000 0.192
#> SRR1643269     4  0.5704     0.9887 0.300 0.000 0.000 0.508 0.000 0.192
#> SRR1643270     4  0.5672     0.9835 0.304 0.000 0.000 0.512 0.000 0.184
#> SRR1643271     4  0.5672     0.9835 0.304 0.000 0.000 0.512 0.000 0.184
#> SRR1643272     4  0.5704     0.9887 0.300 0.000 0.000 0.508 0.000 0.192
#> SRR1643273     1  0.3236     0.4995 0.796 0.000 0.000 0.024 0.000 0.180
#> SRR1643274     1  0.3236     0.4995 0.796 0.000 0.000 0.024 0.000 0.180
#> SRR1643275     1  0.3236     0.4995 0.796 0.000 0.000 0.024 0.000 0.180
#> SRR1643276     1  0.3236     0.4995 0.796 0.000 0.000 0.024 0.000 0.180
#> SRR1643277     1  0.3168     0.5143 0.804 0.000 0.000 0.024 0.000 0.172
#> SRR1643278     1  0.3455     0.4785 0.784 0.000 0.000 0.036 0.000 0.180
#> SRR1643279     1  0.3385     0.4860 0.788 0.000 0.000 0.032 0.000 0.180
#> SRR1643280     1  0.3312     0.4930 0.792 0.000 0.000 0.028 0.000 0.180
#> SRR1643281     1  0.3312     0.4929 0.792 0.000 0.000 0.028 0.000 0.180
#> SRR1643282     1  0.3236     0.4995 0.796 0.000 0.000 0.024 0.000 0.180
#> SRR1643283     1  0.3202     0.5071 0.800 0.000 0.000 0.024 0.000 0.176
#> SRR1643284     1  0.3385     0.4859 0.788 0.000 0.000 0.032 0.000 0.180
#> SRR1643285     1  0.3236     0.4995 0.796 0.000 0.000 0.024 0.000 0.180
#> SRR1643286     1  0.3236     0.4995 0.796 0.000 0.000 0.024 0.000 0.180
#> SRR1643287     6  0.2474     0.8374 0.080 0.000 0.000 0.040 0.000 0.880
#> SRR1643288     6  0.1644     0.9128 0.028 0.000 0.000 0.040 0.000 0.932
#> SRR1643289     6  0.1010     0.9320 0.004 0.000 0.000 0.036 0.000 0.960
#> SRR1643290     6  0.1245     0.9277 0.016 0.000 0.000 0.032 0.000 0.952
#> SRR1643291     6  0.1480     0.9209 0.020 0.000 0.000 0.040 0.000 0.940
#> SRR1643292     6  0.3439     0.7173 0.120 0.000 0.000 0.072 0.000 0.808
#> SRR1643293     6  0.3645     0.6556 0.152 0.000 0.000 0.064 0.000 0.784
#> SRR1643294     6  0.4203     0.4486 0.216 0.000 0.000 0.068 0.000 0.716
#> SRR1643295     6  0.1225     0.9278 0.012 0.000 0.000 0.036 0.000 0.952
#> SRR1643296     6  0.2136     0.8841 0.048 0.000 0.000 0.048 0.000 0.904
#> SRR1643297     6  0.2201     0.8820 0.048 0.000 0.000 0.052 0.000 0.900
#> SRR1643298     6  0.1398     0.9222 0.008 0.000 0.000 0.052 0.000 0.940
#> SRR1643299     6  0.2934     0.7951 0.112 0.000 0.000 0.044 0.000 0.844
#> SRR1643300     6  0.1930     0.8892 0.048 0.000 0.000 0.036 0.000 0.916
#> SRR1643301     1  0.3885     0.4185 0.756 0.000 0.000 0.064 0.000 0.180
#> SRR1643302     1  0.3771     0.4363 0.764 0.000 0.000 0.056 0.000 0.180
#> SRR1643303     1  0.4952     0.0706 0.652 0.000 0.000 0.168 0.000 0.180
#> SRR1643304     1  0.4650     0.2225 0.688 0.000 0.000 0.132 0.000 0.180
#> SRR1643305     1  0.3588     0.4617 0.776 0.000 0.000 0.044 0.000 0.180
#> SRR1643306     1  0.4328     0.3255 0.720 0.000 0.000 0.100 0.000 0.180
#> SRR1643307     1  0.4371     0.3138 0.716 0.000 0.000 0.104 0.000 0.180
#> SRR1643308     1  0.4536     0.2626 0.700 0.000 0.000 0.120 0.000 0.180
#> SRR1643309     1  0.4687     0.2059 0.684 0.000 0.000 0.136 0.000 0.180
#> SRR1643310     1  0.4613     0.2350 0.692 0.000 0.000 0.128 0.000 0.180
#> SRR1643311     1  0.4536     0.2641 0.700 0.000 0.000 0.120 0.000 0.180
#> SRR1643312     1  0.4371     0.3130 0.716 0.000 0.000 0.104 0.000 0.180
#> SRR1643313     1  0.4143     0.3699 0.736 0.000 0.000 0.084 0.000 0.180
#> SRR1643314     1  0.1802     0.7277 0.916 0.072 0.000 0.012 0.000 0.000
#> SRR1643315     1  0.2877     0.7145 0.820 0.168 0.000 0.012 0.000 0.000
#> SRR1643316     1  0.0622     0.7239 0.980 0.008 0.000 0.012 0.000 0.000
#> SRR1643317     1  0.2946     0.7165 0.824 0.160 0.000 0.012 0.000 0.004
#> SRR1643318     1  0.1370     0.7279 0.948 0.036 0.000 0.012 0.000 0.004
#> SRR1643319     1  0.3141     0.7199 0.828 0.140 0.000 0.012 0.000 0.020
#> SRR1643320     1  0.2531     0.7216 0.856 0.132 0.000 0.012 0.000 0.000
#> SRR1643321     1  0.2446     0.7230 0.864 0.124 0.000 0.012 0.000 0.000
#> SRR1643322     1  0.1888     0.7285 0.916 0.068 0.000 0.012 0.000 0.004
#> SRR1643323     1  0.1367     0.7285 0.944 0.044 0.000 0.012 0.000 0.000
#> SRR1643324     1  0.2673     0.7221 0.852 0.132 0.000 0.012 0.000 0.004
#> SRR1643325     1  0.0508     0.7224 0.984 0.004 0.000 0.012 0.000 0.000
#> SRR1643326     1  0.2312     0.7244 0.876 0.112 0.000 0.012 0.000 0.000
#> SRR1643327     1  0.1625     0.7284 0.928 0.060 0.000 0.012 0.000 0.000
#> SRR1643328     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643329     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643330     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643331     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643332     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643333     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643334     1  0.2823     0.7056 0.796 0.204 0.000 0.000 0.000 0.000
#> SRR1643335     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643336     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643337     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643338     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643339     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643340     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643341     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643342     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643343     1  0.0713     0.7109 0.972 0.000 0.000 0.028 0.000 0.000
#> SRR1643344     1  0.0363     0.7195 0.988 0.000 0.000 0.012 0.000 0.000
#> SRR1643345     1  0.0458     0.7177 0.984 0.000 0.000 0.016 0.000 0.000
#> SRR1643346     1  0.1007     0.6988 0.956 0.000 0.000 0.044 0.000 0.000
#> SRR1643347     1  0.0458     0.7177 0.984 0.000 0.000 0.016 0.000 0.000
#> SRR1643348     1  0.0632     0.7144 0.976 0.000 0.000 0.024 0.000 0.000
#> SRR1643349     1  0.0790     0.7082 0.968 0.000 0.000 0.032 0.000 0.000
#> SRR1643350     1  0.0363     0.7197 0.988 0.000 0.000 0.012 0.000 0.000
#> SRR1643351     1  0.0790     0.7097 0.968 0.000 0.000 0.032 0.000 0.000
#> SRR1643352     1  0.0547     0.7155 0.980 0.000 0.000 0.020 0.000 0.000
#> SRR1643353     1  0.0865     0.7057 0.964 0.000 0.000 0.036 0.000 0.000
#> SRR1643354     1  0.0713     0.7109 0.972 0.000 0.000 0.028 0.000 0.000
#> SRR1643355     1  0.0458     0.7177 0.984 0.000 0.000 0.016 0.000 0.000
#> SRR1643356     1  0.0865     0.7074 0.964 0.000 0.000 0.036 0.000 0.000
#> SRR1643357     1  0.0363     0.7194 0.988 0.000 0.000 0.012 0.000 0.000
#> SRR1643358     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643359     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643360     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643361     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643362     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643363     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643364     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643365     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643366     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643367     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643368     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643369     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643370     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643371     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643372     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643373     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643374     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643375     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643376     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643377     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643378     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643379     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643380     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643381     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643382     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643383     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643384     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643385     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643386     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643387     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643388     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643389     4  0.5726     0.9901 0.300 0.000 0.000 0.504 0.000 0.196
#> SRR1643390     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643391     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643392     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643393     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643394     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643395     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643396     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643397     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643398     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643399     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643400     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643401     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643402     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643403     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643404     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643405     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643406     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643407     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643408     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643409     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643410     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643411     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643412     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643413     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643414     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643415     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643416     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643417     1  0.3371     0.6856 0.708 0.292 0.000 0.000 0.000 0.000
#> SRR1643418     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643419     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643420     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643421     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643422     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643423     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643424     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643425     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643426     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643427     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643428     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643429     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643430     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643431     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643432     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643433     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643434     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643435     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643436     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643437     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643438     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643439     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643440     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643441     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643442     6  0.0000     0.9480 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643443     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643444     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643445     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643446     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643447     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643448     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643449     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643450     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643451     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643452     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643453     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643454     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643455     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643456     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643457     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643458     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643459     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643460     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643461     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643462     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643463     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643464     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643466     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643467     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643468     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643469     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643470     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643471     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643472     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643473     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643474     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643475     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643477     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643478     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643479     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643480     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643481     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643482     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643483     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643484     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643485     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643486     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643487     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643488     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643489     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643490     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643491     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643492     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643493     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643494     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643495     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643496     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643497     2  0.5176     0.7297 0.000 0.608 0.000 0.248 0.144 0.000
#> SRR1643498     2  0.5011     0.7553 0.000 0.620 0.000 0.264 0.116 0.000
#> SRR1643499     2  0.5667     0.6037 0.000 0.532 0.000 0.236 0.232 0.000
#> SRR1643500     2  0.5036     0.7356 0.000 0.632 0.000 0.228 0.140 0.000
#> SRR1643501     2  0.5680     0.5675 0.000 0.528 0.000 0.220 0.252 0.000
#> SRR1643502     2  0.4793     0.7669 0.000 0.648 0.000 0.252 0.100 0.000
#> SRR1643503     2  0.4597     0.7859 0.000 0.652 0.000 0.276 0.072 0.000
#> SRR1643504     2  0.4819     0.7761 0.000 0.628 0.000 0.284 0.088 0.000
#> SRR1643505     5  0.1204     0.9496 0.000 0.056 0.000 0.000 0.944 0.000
#> SRR1643506     2  0.5234     0.7300 0.000 0.596 0.000 0.260 0.144 0.000
#> SRR1643507     2  0.4931     0.7550 0.000 0.636 0.000 0.248 0.116 0.000
#> SRR1643508     2  0.5219     0.7199 0.000 0.604 0.000 0.244 0.152 0.000
#> SRR1643509     2  0.5335     0.7255 0.000 0.576 0.000 0.276 0.148 0.000
#> SRR1643510     2  0.5508     0.6368 0.000 0.564 0.000 0.224 0.212 0.000
#> SRR1643511     2  0.5546     0.6433 0.000 0.556 0.000 0.236 0.208 0.000
#> SRR1643512     2  0.4352     0.7987 0.000 0.668 0.000 0.280 0.052 0.000
#> SRR1643513     2  0.5150     0.7119 0.000 0.620 0.000 0.220 0.160 0.000
#> SRR1643531     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643532     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643533     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643534     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643535     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643536     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643537     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643538     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643539     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643540     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643541     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643542     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643543     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643544     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643514     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643515     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643516     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643517     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643518     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643519     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643520     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643521     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643522     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643523     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643524     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643525     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643526     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643527     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643528     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643529     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643530     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643545     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643546     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643547     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643548     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643549     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643550     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643551     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643552     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643553     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643554     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643555     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643556     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643558     2  0.3866     0.9303 0.000 0.516 0.000 0.484 0.000 0.000
#> SRR1643559     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643560     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643561     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643562     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643563     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643564     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643565     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643566     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643567     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643568     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643569     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643570     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643571     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643572     5  0.0000     0.9992 0.000 0.000 0.000 0.000 1.000 0.000

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-CV-pam-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-CV-pam-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-CV-pam-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-CV-pam-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-CV-pam-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-CV-pam-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-CV-pam-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-CV-pam-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-CV-pam-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-CV-pam-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-CV-pam-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-CV-pam-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-CV-pam-get-signatures-3

get_signatures(res, k = 5)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-CV-pam-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-CV-pam-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-CV-pam-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-CV-pam-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-CV-pam-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-CV-pam-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-CV-pam-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk CV-pam-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-CV-pam-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-CV-pam-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-CV-pam-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-CV-pam-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-CV-pam-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk CV-pam-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


CV:mclust**

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["CV", "mclust"]
# you can also extract it by
# res = res_list["CV:mclust"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'CV' method.
#>   Subgroups are detected by 'mclust' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 6.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk CV-mclust-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk CV-mclust-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           0.998       0.999         0.4357 0.566   0.566
#> 3 3 0.884           0.931       0.967         0.3399 0.874   0.777
#> 4 4 0.837           0.865       0.933         0.2138 0.842   0.639
#> 5 5 0.901           0.949       0.942         0.0852 0.908   0.691
#> 6 6 0.958           0.921       0.951         0.0352 0.956   0.816

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 6
#> attr(,"optional")
#> [1] 2 5

There is also optional best \(k\) = 2 5 that is worth to check.

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette    p1    p2
#> SRR1643167     1  0.0000      0.998 1.000 0.000
#> SRR1643168     1  0.0000      0.998 1.000 0.000
#> SRR1643169     1  0.0000      0.998 1.000 0.000
#> SRR1643170     1  0.0000      0.998 1.000 0.000
#> SRR1643171     1  0.0000      0.998 1.000 0.000
#> SRR1643172     1  0.0000      0.998 1.000 0.000
#> SRR1643173     1  0.0000      0.998 1.000 0.000
#> SRR1643174     1  0.0000      0.998 1.000 0.000
#> SRR1643175     1  0.0000      0.998 1.000 0.000
#> SRR1643176     1  0.0000      0.998 1.000 0.000
#> SRR1643177     1  0.0000      0.998 1.000 0.000
#> SRR1643178     1  0.0000      0.998 1.000 0.000
#> SRR1643180     1  0.0000      0.998 1.000 0.000
#> SRR1643181     1  0.0000      0.998 1.000 0.000
#> SRR1643182     1  0.0000      0.998 1.000 0.000
#> SRR1643183     1  0.0000      0.998 1.000 0.000
#> SRR1643184     1  0.0000      0.998 1.000 0.000
#> SRR1643185     1  0.0000      0.998 1.000 0.000
#> SRR1643186     1  0.0000      0.998 1.000 0.000
#> SRR1643187     1  0.0000      0.998 1.000 0.000
#> SRR1643188     1  0.0000      0.998 1.000 0.000
#> SRR1643189     1  0.0000      0.998 1.000 0.000
#> SRR1643190     1  0.0000      0.998 1.000 0.000
#> SRR1643191     1  0.0000      0.998 1.000 0.000
#> SRR1643192     1  0.0000      0.998 1.000 0.000
#> SRR1643193     1  0.0000      0.998 1.000 0.000
#> SRR1643194     1  0.0000      0.998 1.000 0.000
#> SRR1643195     1  0.0000      0.998 1.000 0.000
#> SRR1643196     1  0.0000      0.998 1.000 0.000
#> SRR1643197     1  0.0000      0.998 1.000 0.000
#> SRR1643198     1  0.0000      0.998 1.000 0.000
#> SRR1643199     1  0.0000      0.998 1.000 0.000
#> SRR1643200     1  0.0000      0.998 1.000 0.000
#> SRR1643201     1  0.0000      0.998 1.000 0.000
#> SRR1643202     1  0.0000      0.998 1.000 0.000
#> SRR1643203     1  0.0000      0.998 1.000 0.000
#> SRR1643204     1  0.0000      0.998 1.000 0.000
#> SRR1643205     1  0.0938      0.990 0.988 0.012
#> SRR1643206     1  0.0938      0.990 0.988 0.012
#> SRR1643207     1  0.0938      0.990 0.988 0.012
#> SRR1643208     1  0.0938      0.990 0.988 0.012
#> SRR1643209     1  0.0938      0.990 0.988 0.012
#> SRR1643210     1  0.0938      0.990 0.988 0.012
#> SRR1643211     1  0.0938      0.990 0.988 0.012
#> SRR1643212     1  0.0938      0.990 0.988 0.012
#> SRR1643213     1  0.0938      0.990 0.988 0.012
#> SRR1643214     1  0.0938      0.990 0.988 0.012
#> SRR1643215     1  0.0938      0.990 0.988 0.012
#> SRR1643216     1  0.0938      0.990 0.988 0.012
#> SRR1643217     1  0.0938      0.990 0.988 0.012
#> SRR1643218     1  0.0938      0.990 0.988 0.012
#> SRR1643219     1  0.0938      0.990 0.988 0.012
#> SRR1643220     1  0.0938      0.990 0.988 0.012
#> SRR1643221     1  0.0938      0.990 0.988 0.012
#> SRR1643222     1  0.0938      0.990 0.988 0.012
#> SRR1643223     1  0.0938      0.990 0.988 0.012
#> SRR1643224     1  0.0938      0.990 0.988 0.012
#> SRR1643225     1  0.0938      0.990 0.988 0.012
#> SRR1643226     1  0.0938      0.990 0.988 0.012
#> SRR1643227     1  0.0938      0.990 0.988 0.012
#> SRR1643228     1  0.0938      0.990 0.988 0.012
#> SRR1643229     1  0.0938      0.990 0.988 0.012
#> SRR1643230     1  0.0938      0.990 0.988 0.012
#> SRR1643231     1  0.0938      0.990 0.988 0.012
#> SRR1643232     1  0.0938      0.990 0.988 0.012
#> SRR1643233     1  0.0938      0.990 0.988 0.012
#> SRR1643234     1  0.0938      0.990 0.988 0.012
#> SRR1643235     1  0.0938      0.990 0.988 0.012
#> SRR1643236     1  0.0938      0.990 0.988 0.012
#> SRR1643237     1  0.0938      0.990 0.988 0.012
#> SRR1643238     1  0.0938      0.990 0.988 0.012
#> SRR1643239     1  0.0938      0.990 0.988 0.012
#> SRR1643240     1  0.0938      0.990 0.988 0.012
#> SRR1643241     1  0.0938      0.990 0.988 0.012
#> SRR1643242     1  0.0938      0.990 0.988 0.012
#> SRR1643243     1  0.0938      0.990 0.988 0.012
#> SRR1643245     1  0.0938      0.990 0.988 0.012
#> SRR1643246     1  0.0938      0.990 0.988 0.012
#> SRR1643247     1  0.0938      0.990 0.988 0.012
#> SRR1643248     1  0.0938      0.990 0.988 0.012
#> SRR1643249     1  0.0938      0.990 0.988 0.012
#> SRR1643250     1  0.0000      0.998 1.000 0.000
#> SRR1643251     1  0.0000      0.998 1.000 0.000
#> SRR1643252     1  0.0000      0.998 1.000 0.000
#> SRR1643253     1  0.0000      0.998 1.000 0.000
#> SRR1643254     1  0.0000      0.998 1.000 0.000
#> SRR1643255     1  0.0000      0.998 1.000 0.000
#> SRR1643256     1  0.0000      0.998 1.000 0.000
#> SRR1643257     1  0.0000      0.998 1.000 0.000
#> SRR1643258     1  0.0000      0.998 1.000 0.000
#> SRR1643259     1  0.0000      0.998 1.000 0.000
#> SRR1643260     1  0.0000      0.998 1.000 0.000
#> SRR1643261     1  0.0000      0.998 1.000 0.000
#> SRR1643262     1  0.0000      0.998 1.000 0.000
#> SRR1643263     1  0.0000      0.998 1.000 0.000
#> SRR1643264     1  0.0000      0.998 1.000 0.000
#> SRR1643266     1  0.0000      0.998 1.000 0.000
#> SRR1643267     1  0.0000      0.998 1.000 0.000
#> SRR1643268     1  0.0000      0.998 1.000 0.000
#> SRR1643269     1  0.0000      0.998 1.000 0.000
#> SRR1643270     1  0.0000      0.998 1.000 0.000
#> SRR1643271     1  0.0000      0.998 1.000 0.000
#> SRR1643272     1  0.0000      0.998 1.000 0.000
#> SRR1643273     1  0.0000      0.998 1.000 0.000
#> SRR1643274     1  0.0000      0.998 1.000 0.000
#> SRR1643275     1  0.0000      0.998 1.000 0.000
#> SRR1643276     1  0.0000      0.998 1.000 0.000
#> SRR1643277     1  0.0000      0.998 1.000 0.000
#> SRR1643278     1  0.0000      0.998 1.000 0.000
#> SRR1643279     1  0.0000      0.998 1.000 0.000
#> SRR1643280     1  0.0000      0.998 1.000 0.000
#> SRR1643281     1  0.0000      0.998 1.000 0.000
#> SRR1643282     1  0.0000      0.998 1.000 0.000
#> SRR1643283     1  0.0000      0.998 1.000 0.000
#> SRR1643284     1  0.0000      0.998 1.000 0.000
#> SRR1643285     1  0.0000      0.998 1.000 0.000
#> SRR1643286     1  0.0000      0.998 1.000 0.000
#> SRR1643287     1  0.0000      0.998 1.000 0.000
#> SRR1643288     1  0.0000      0.998 1.000 0.000
#> SRR1643289     1  0.0000      0.998 1.000 0.000
#> SRR1643290     1  0.0000      0.998 1.000 0.000
#> SRR1643291     1  0.0000      0.998 1.000 0.000
#> SRR1643292     1  0.0000      0.998 1.000 0.000
#> SRR1643293     1  0.0000      0.998 1.000 0.000
#> SRR1643294     1  0.0000      0.998 1.000 0.000
#> SRR1643295     1  0.0000      0.998 1.000 0.000
#> SRR1643296     1  0.0000      0.998 1.000 0.000
#> SRR1643297     1  0.0000      0.998 1.000 0.000
#> SRR1643298     1  0.0000      0.998 1.000 0.000
#> SRR1643299     1  0.0000      0.998 1.000 0.000
#> SRR1643300     1  0.0000      0.998 1.000 0.000
#> SRR1643301     1  0.0000      0.998 1.000 0.000
#> SRR1643302     1  0.0000      0.998 1.000 0.000
#> SRR1643303     1  0.0000      0.998 1.000 0.000
#> SRR1643304     1  0.0000      0.998 1.000 0.000
#> SRR1643305     1  0.0000      0.998 1.000 0.000
#> SRR1643306     1  0.0000      0.998 1.000 0.000
#> SRR1643307     1  0.0000      0.998 1.000 0.000
#> SRR1643308     1  0.0000      0.998 1.000 0.000
#> SRR1643309     1  0.0000      0.998 1.000 0.000
#> SRR1643310     1  0.0000      0.998 1.000 0.000
#> SRR1643311     1  0.0000      0.998 1.000 0.000
#> SRR1643312     1  0.0000      0.998 1.000 0.000
#> SRR1643313     1  0.0000      0.998 1.000 0.000
#> SRR1643314     1  0.0000      0.998 1.000 0.000
#> SRR1643315     1  0.0000      0.998 1.000 0.000
#> SRR1643316     1  0.0000      0.998 1.000 0.000
#> SRR1643317     1  0.0000      0.998 1.000 0.000
#> SRR1643318     1  0.0000      0.998 1.000 0.000
#> SRR1643319     1  0.0000      0.998 1.000 0.000
#> SRR1643320     1  0.0000      0.998 1.000 0.000
#> SRR1643321     1  0.0000      0.998 1.000 0.000
#> SRR1643322     1  0.0000      0.998 1.000 0.000
#> SRR1643323     1  0.0000      0.998 1.000 0.000
#> SRR1643324     1  0.0000      0.998 1.000 0.000
#> SRR1643325     1  0.0000      0.998 1.000 0.000
#> SRR1643326     1  0.0000      0.998 1.000 0.000
#> SRR1643327     1  0.0000      0.998 1.000 0.000
#> SRR1643328     1  0.0000      0.998 1.000 0.000
#> SRR1643329     1  0.0000      0.998 1.000 0.000
#> SRR1643330     1  0.0000      0.998 1.000 0.000
#> SRR1643331     1  0.0000      0.998 1.000 0.000
#> SRR1643332     1  0.0000      0.998 1.000 0.000
#> SRR1643333     1  0.0000      0.998 1.000 0.000
#> SRR1643334     1  0.0000      0.998 1.000 0.000
#> SRR1643335     1  0.0000      0.998 1.000 0.000
#> SRR1643336     1  0.0000      0.998 1.000 0.000
#> SRR1643337     1  0.0000      0.998 1.000 0.000
#> SRR1643338     1  0.0000      0.998 1.000 0.000
#> SRR1643339     1  0.0000      0.998 1.000 0.000
#> SRR1643340     1  0.0000      0.998 1.000 0.000
#> SRR1643341     1  0.0000      0.998 1.000 0.000
#> SRR1643342     1  0.0000      0.998 1.000 0.000
#> SRR1643343     1  0.0000      0.998 1.000 0.000
#> SRR1643344     1  0.0000      0.998 1.000 0.000
#> SRR1643345     1  0.0000      0.998 1.000 0.000
#> SRR1643346     1  0.0000      0.998 1.000 0.000
#> SRR1643347     1  0.0000      0.998 1.000 0.000
#> SRR1643348     1  0.0000      0.998 1.000 0.000
#> SRR1643349     1  0.0000      0.998 1.000 0.000
#> SRR1643350     1  0.0000      0.998 1.000 0.000
#> SRR1643351     1  0.0000      0.998 1.000 0.000
#> SRR1643352     1  0.0000      0.998 1.000 0.000
#> SRR1643353     1  0.0000      0.998 1.000 0.000
#> SRR1643354     1  0.0000      0.998 1.000 0.000
#> SRR1643355     1  0.0000      0.998 1.000 0.000
#> SRR1643356     1  0.0000      0.998 1.000 0.000
#> SRR1643357     1  0.0000      0.998 1.000 0.000
#> SRR1643358     1  0.0000      0.998 1.000 0.000
#> SRR1643359     1  0.0000      0.998 1.000 0.000
#> SRR1643360     1  0.0000      0.998 1.000 0.000
#> SRR1643361     1  0.0000      0.998 1.000 0.000
#> SRR1643362     1  0.0000      0.998 1.000 0.000
#> SRR1643363     1  0.0000      0.998 1.000 0.000
#> SRR1643364     1  0.0000      0.998 1.000 0.000
#> SRR1643365     1  0.0000      0.998 1.000 0.000
#> SRR1643366     1  0.0000      0.998 1.000 0.000
#> SRR1643367     1  0.0000      0.998 1.000 0.000
#> SRR1643368     1  0.0000      0.998 1.000 0.000
#> SRR1643369     1  0.0000      0.998 1.000 0.000
#> SRR1643370     1  0.0000      0.998 1.000 0.000
#> SRR1643371     1  0.0000      0.998 1.000 0.000
#> SRR1643372     1  0.0000      0.998 1.000 0.000
#> SRR1643373     1  0.0000      0.998 1.000 0.000
#> SRR1643374     1  0.0000      0.998 1.000 0.000
#> SRR1643375     1  0.0000      0.998 1.000 0.000
#> SRR1643376     1  0.0000      0.998 1.000 0.000
#> SRR1643377     1  0.0000      0.998 1.000 0.000
#> SRR1643378     1  0.0000      0.998 1.000 0.000
#> SRR1643379     1  0.0000      0.998 1.000 0.000
#> SRR1643380     1  0.0000      0.998 1.000 0.000
#> SRR1643381     1  0.0000      0.998 1.000 0.000
#> SRR1643382     1  0.0000      0.998 1.000 0.000
#> SRR1643383     1  0.0000      0.998 1.000 0.000
#> SRR1643384     1  0.0000      0.998 1.000 0.000
#> SRR1643385     1  0.0000      0.998 1.000 0.000
#> SRR1643386     1  0.0000      0.998 1.000 0.000
#> SRR1643387     1  0.0000      0.998 1.000 0.000
#> SRR1643388     1  0.0000      0.998 1.000 0.000
#> SRR1643389     1  0.0000      0.998 1.000 0.000
#> SRR1643390     1  0.0000      0.998 1.000 0.000
#> SRR1643391     1  0.0000      0.998 1.000 0.000
#> SRR1643392     1  0.0000      0.998 1.000 0.000
#> SRR1643393     1  0.0000      0.998 1.000 0.000
#> SRR1643394     1  0.0000      0.998 1.000 0.000
#> SRR1643395     1  0.0000      0.998 1.000 0.000
#> SRR1643396     1  0.0000      0.998 1.000 0.000
#> SRR1643397     1  0.0000      0.998 1.000 0.000
#> SRR1643398     1  0.0000      0.998 1.000 0.000
#> SRR1643399     1  0.0000      0.998 1.000 0.000
#> SRR1643400     1  0.0000      0.998 1.000 0.000
#> SRR1643401     1  0.0000      0.998 1.000 0.000
#> SRR1643402     1  0.0000      0.998 1.000 0.000
#> SRR1643403     1  0.0000      0.998 1.000 0.000
#> SRR1643404     1  0.0000      0.998 1.000 0.000
#> SRR1643405     1  0.0000      0.998 1.000 0.000
#> SRR1643406     1  0.0000      0.998 1.000 0.000
#> SRR1643407     1  0.0000      0.998 1.000 0.000
#> SRR1643408     1  0.0000      0.998 1.000 0.000
#> SRR1643409     1  0.0000      0.998 1.000 0.000
#> SRR1643410     1  0.0000      0.998 1.000 0.000
#> SRR1643411     1  0.0000      0.998 1.000 0.000
#> SRR1643412     1  0.0000      0.998 1.000 0.000
#> SRR1643413     1  0.0000      0.998 1.000 0.000
#> SRR1643414     1  0.0000      0.998 1.000 0.000
#> SRR1643415     1  0.0000      0.998 1.000 0.000
#> SRR1643416     1  0.0000      0.998 1.000 0.000
#> SRR1643417     1  0.0000      0.998 1.000 0.000
#> SRR1643418     1  0.0000      0.998 1.000 0.000
#> SRR1643419     1  0.0000      0.998 1.000 0.000
#> SRR1643420     1  0.0000      0.998 1.000 0.000
#> SRR1643421     1  0.0000      0.998 1.000 0.000
#> SRR1643422     1  0.0000      0.998 1.000 0.000
#> SRR1643423     1  0.0000      0.998 1.000 0.000
#> SRR1643424     1  0.0000      0.998 1.000 0.000
#> SRR1643425     1  0.0000      0.998 1.000 0.000
#> SRR1643426     1  0.0000      0.998 1.000 0.000
#> SRR1643427     1  0.0000      0.998 1.000 0.000
#> SRR1643428     1  0.0000      0.998 1.000 0.000
#> SRR1643429     1  0.0000      0.998 1.000 0.000
#> SRR1643430     1  0.0000      0.998 1.000 0.000
#> SRR1643431     1  0.0000      0.998 1.000 0.000
#> SRR1643432     1  0.0000      0.998 1.000 0.000
#> SRR1643433     1  0.0000      0.998 1.000 0.000
#> SRR1643434     1  0.0000      0.998 1.000 0.000
#> SRR1643435     1  0.0000      0.998 1.000 0.000
#> SRR1643436     1  0.0000      0.998 1.000 0.000
#> SRR1643437     1  0.0000      0.998 1.000 0.000
#> SRR1643438     1  0.0000      0.998 1.000 0.000
#> SRR1643439     1  0.0000      0.998 1.000 0.000
#> SRR1643440     1  0.0000      0.998 1.000 0.000
#> SRR1643441     1  0.0000      0.998 1.000 0.000
#> SRR1643442     1  0.0000      0.998 1.000 0.000
#> SRR1643443     2  0.0000      1.000 0.000 1.000
#> SRR1643444     2  0.0000      1.000 0.000 1.000
#> SRR1643445     2  0.0000      1.000 0.000 1.000
#> SRR1643446     2  0.0000      1.000 0.000 1.000
#> SRR1643447     2  0.0000      1.000 0.000 1.000
#> SRR1643448     2  0.0000      1.000 0.000 1.000
#> SRR1643449     2  0.0000      1.000 0.000 1.000
#> SRR1643450     2  0.0000      1.000 0.000 1.000
#> SRR1643451     2  0.0000      1.000 0.000 1.000
#> SRR1643452     2  0.0000      1.000 0.000 1.000
#> SRR1643453     2  0.0000      1.000 0.000 1.000
#> SRR1643454     2  0.0000      1.000 0.000 1.000
#> SRR1643455     2  0.0000      1.000 0.000 1.000
#> SRR1643456     2  0.0000      1.000 0.000 1.000
#> SRR1643457     2  0.0000      1.000 0.000 1.000
#> SRR1643458     2  0.0000      1.000 0.000 1.000
#> SRR1643459     2  0.0000      1.000 0.000 1.000
#> SRR1643460     2  0.0000      1.000 0.000 1.000
#> SRR1643461     2  0.0000      1.000 0.000 1.000
#> SRR1643462     2  0.0000      1.000 0.000 1.000
#> SRR1643463     2  0.0000      1.000 0.000 1.000
#> SRR1643464     2  0.0000      1.000 0.000 1.000
#> SRR1643466     2  0.0000      1.000 0.000 1.000
#> SRR1643467     2  0.0000      1.000 0.000 1.000
#> SRR1643468     2  0.0000      1.000 0.000 1.000
#> SRR1643469     2  0.0000      1.000 0.000 1.000
#> SRR1643470     2  0.0000      1.000 0.000 1.000
#> SRR1643471     2  0.0000      1.000 0.000 1.000
#> SRR1643472     2  0.0000      1.000 0.000 1.000
#> SRR1643473     2  0.0000      1.000 0.000 1.000
#> SRR1643474     2  0.0000      1.000 0.000 1.000
#> SRR1643475     2  0.0000      1.000 0.000 1.000
#> SRR1643477     2  0.0000      1.000 0.000 1.000
#> SRR1643478     2  0.0000      1.000 0.000 1.000
#> SRR1643479     2  0.0000      1.000 0.000 1.000
#> SRR1643480     2  0.0000      1.000 0.000 1.000
#> SRR1643481     2  0.0000      1.000 0.000 1.000
#> SRR1643482     2  0.0000      1.000 0.000 1.000
#> SRR1643483     2  0.0000      1.000 0.000 1.000
#> SRR1643484     2  0.0000      1.000 0.000 1.000
#> SRR1643485     2  0.0000      1.000 0.000 1.000
#> SRR1643486     2  0.0000      1.000 0.000 1.000
#> SRR1643487     2  0.0000      1.000 0.000 1.000
#> SRR1643488     2  0.0000      1.000 0.000 1.000
#> SRR1643489     2  0.0000      1.000 0.000 1.000
#> SRR1643490     2  0.0000      1.000 0.000 1.000
#> SRR1643491     2  0.0000      1.000 0.000 1.000
#> SRR1643492     2  0.0000      1.000 0.000 1.000
#> SRR1643493     2  0.0000      1.000 0.000 1.000
#> SRR1643494     2  0.0000      1.000 0.000 1.000
#> SRR1643495     2  0.0000      1.000 0.000 1.000
#> SRR1643496     2  0.0000      1.000 0.000 1.000
#> SRR1643497     2  0.0000      1.000 0.000 1.000
#> SRR1643498     2  0.0000      1.000 0.000 1.000
#> SRR1643499     2  0.0000      1.000 0.000 1.000
#> SRR1643500     2  0.0000      1.000 0.000 1.000
#> SRR1643501     2  0.0000      1.000 0.000 1.000
#> SRR1643502     2  0.0000      1.000 0.000 1.000
#> SRR1643503     2  0.0000      1.000 0.000 1.000
#> SRR1643504     2  0.0000      1.000 0.000 1.000
#> SRR1643505     2  0.0000      1.000 0.000 1.000
#> SRR1643506     2  0.0000      1.000 0.000 1.000
#> SRR1643507     2  0.0000      1.000 0.000 1.000
#> SRR1643508     2  0.0000      1.000 0.000 1.000
#> SRR1643509     2  0.0000      1.000 0.000 1.000
#> SRR1643510     2  0.0000      1.000 0.000 1.000
#> SRR1643511     2  0.0000      1.000 0.000 1.000
#> SRR1643512     2  0.0000      1.000 0.000 1.000
#> SRR1643513     2  0.0000      1.000 0.000 1.000
#> SRR1643531     2  0.0000      1.000 0.000 1.000
#> SRR1643532     2  0.0000      1.000 0.000 1.000
#> SRR1643533     2  0.0000      1.000 0.000 1.000
#> SRR1643534     2  0.0000      1.000 0.000 1.000
#> SRR1643535     2  0.0000      1.000 0.000 1.000
#> SRR1643536     2  0.0000      1.000 0.000 1.000
#> SRR1643537     2  0.0000      1.000 0.000 1.000
#> SRR1643538     2  0.0000      1.000 0.000 1.000
#> SRR1643539     2  0.0000      1.000 0.000 1.000
#> SRR1643540     2  0.0000      1.000 0.000 1.000
#> SRR1643541     2  0.0000      1.000 0.000 1.000
#> SRR1643542     2  0.0000      1.000 0.000 1.000
#> SRR1643543     2  0.0000      1.000 0.000 1.000
#> SRR1643544     2  0.0000      1.000 0.000 1.000
#> SRR1643514     2  0.0000      1.000 0.000 1.000
#> SRR1643515     2  0.0000      1.000 0.000 1.000
#> SRR1643516     2  0.0000      1.000 0.000 1.000
#> SRR1643517     2  0.0000      1.000 0.000 1.000
#> SRR1643518     2  0.0000      1.000 0.000 1.000
#> SRR1643519     2  0.0000      1.000 0.000 1.000
#> SRR1643520     2  0.0000      1.000 0.000 1.000
#> SRR1643521     2  0.0000      1.000 0.000 1.000
#> SRR1643522     2  0.0000      1.000 0.000 1.000
#> SRR1643523     2  0.0000      1.000 0.000 1.000
#> SRR1643524     2  0.0000      1.000 0.000 1.000
#> SRR1643525     2  0.0000      1.000 0.000 1.000
#> SRR1643526     2  0.0000      1.000 0.000 1.000
#> SRR1643527     2  0.0000      1.000 0.000 1.000
#> SRR1643528     2  0.0000      1.000 0.000 1.000
#> SRR1643529     2  0.0000      1.000 0.000 1.000
#> SRR1643530     2  0.0000      1.000 0.000 1.000
#> SRR1643545     2  0.0000      1.000 0.000 1.000
#> SRR1643546     2  0.0000      1.000 0.000 1.000
#> SRR1643547     2  0.0000      1.000 0.000 1.000
#> SRR1643548     2  0.0000      1.000 0.000 1.000
#> SRR1643549     2  0.0000      1.000 0.000 1.000
#> SRR1643550     2  0.0000      1.000 0.000 1.000
#> SRR1643551     2  0.0000      1.000 0.000 1.000
#> SRR1643552     2  0.0000      1.000 0.000 1.000
#> SRR1643553     2  0.0000      1.000 0.000 1.000
#> SRR1643554     2  0.0000      1.000 0.000 1.000
#> SRR1643555     2  0.0000      1.000 0.000 1.000
#> SRR1643556     2  0.0000      1.000 0.000 1.000
#> SRR1643558     2  0.0000      1.000 0.000 1.000
#> SRR1643559     2  0.0000      1.000 0.000 1.000
#> SRR1643560     2  0.0000      1.000 0.000 1.000
#> SRR1643561     2  0.0000      1.000 0.000 1.000
#> SRR1643562     2  0.0000      1.000 0.000 1.000
#> SRR1643563     2  0.0000      1.000 0.000 1.000
#> SRR1643564     2  0.0000      1.000 0.000 1.000
#> SRR1643565     2  0.0000      1.000 0.000 1.000
#> SRR1643566     2  0.0000      1.000 0.000 1.000
#> SRR1643567     2  0.0000      1.000 0.000 1.000
#> SRR1643568     2  0.0000      1.000 0.000 1.000
#> SRR1643569     2  0.0000      1.000 0.000 1.000
#> SRR1643570     2  0.0000      1.000 0.000 1.000
#> SRR1643571     2  0.0000      1.000 0.000 1.000
#> SRR1643572     2  0.0000      1.000 0.000 1.000

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1 p2    p3
#> SRR1643167     1  0.0592      0.938 0.988  0 0.012
#> SRR1643168     1  0.0592      0.938 0.988  0 0.012
#> SRR1643169     1  0.0592      0.938 0.988  0 0.012
#> SRR1643170     1  0.0592      0.938 0.988  0 0.012
#> SRR1643171     1  0.0592      0.938 0.988  0 0.012
#> SRR1643172     1  0.0592      0.938 0.988  0 0.012
#> SRR1643173     1  0.0592      0.938 0.988  0 0.012
#> SRR1643174     1  0.0592      0.938 0.988  0 0.012
#> SRR1643175     1  0.0237      0.943 0.996  0 0.004
#> SRR1643176     1  0.0237      0.943 0.996  0 0.004
#> SRR1643177     1  0.0237      0.943 0.996  0 0.004
#> SRR1643178     1  0.0237      0.943 0.996  0 0.004
#> SRR1643180     1  0.0592      0.938 0.988  0 0.012
#> SRR1643181     1  0.0592      0.938 0.988  0 0.012
#> SRR1643182     1  0.0592      0.938 0.988  0 0.012
#> SRR1643183     1  0.0592      0.938 0.988  0 0.012
#> SRR1643184     1  0.0592      0.938 0.988  0 0.012
#> SRR1643185     1  0.0592      0.938 0.988  0 0.012
#> SRR1643186     1  0.0592      0.938 0.988  0 0.012
#> SRR1643187     1  0.0000      0.942 1.000  0 0.000
#> SRR1643188     1  0.0000      0.942 1.000  0 0.000
#> SRR1643189     1  0.0000      0.942 1.000  0 0.000
#> SRR1643190     1  0.0000      0.942 1.000  0 0.000
#> SRR1643191     1  0.0000      0.942 1.000  0 0.000
#> SRR1643192     1  0.0000      0.942 1.000  0 0.000
#> SRR1643193     1  0.0000      0.942 1.000  0 0.000
#> SRR1643194     1  0.0000      0.942 1.000  0 0.000
#> SRR1643195     1  0.0237      0.943 0.996  0 0.004
#> SRR1643196     1  0.0237      0.943 0.996  0 0.004
#> SRR1643197     1  0.0237      0.942 0.996  0 0.004
#> SRR1643198     1  0.0237      0.942 0.996  0 0.004
#> SRR1643199     1  0.0000      0.942 1.000  0 0.000
#> SRR1643200     1  0.0000      0.942 1.000  0 0.000
#> SRR1643201     1  0.0000      0.942 1.000  0 0.000
#> SRR1643202     1  0.0000      0.942 1.000  0 0.000
#> SRR1643203     1  0.0000      0.942 1.000  0 0.000
#> SRR1643204     1  0.0000      0.942 1.000  0 0.000
#> SRR1643205     3  0.0592      0.999 0.012  0 0.988
#> SRR1643206     3  0.0592      0.999 0.012  0 0.988
#> SRR1643207     3  0.0592      0.999 0.012  0 0.988
#> SRR1643208     3  0.0592      0.999 0.012  0 0.988
#> SRR1643209     3  0.0592      0.999 0.012  0 0.988
#> SRR1643210     3  0.0592      0.999 0.012  0 0.988
#> SRR1643211     3  0.0592      0.999 0.012  0 0.988
#> SRR1643212     3  0.0592      0.999 0.012  0 0.988
#> SRR1643213     3  0.0592      0.999 0.012  0 0.988
#> SRR1643214     3  0.0592      0.999 0.012  0 0.988
#> SRR1643215     3  0.0592      0.999 0.012  0 0.988
#> SRR1643216     3  0.0592      0.999 0.012  0 0.988
#> SRR1643217     3  0.0592      0.999 0.012  0 0.988
#> SRR1643218     3  0.0592      0.999 0.012  0 0.988
#> SRR1643219     3  0.0592      0.999 0.012  0 0.988
#> SRR1643220     3  0.0592      0.999 0.012  0 0.988
#> SRR1643221     3  0.0592      0.999 0.012  0 0.988
#> SRR1643222     3  0.0592      0.999 0.012  0 0.988
#> SRR1643223     3  0.0592      0.999 0.012  0 0.988
#> SRR1643224     3  0.0592      0.999 0.012  0 0.988
#> SRR1643225     3  0.0592      0.999 0.012  0 0.988
#> SRR1643226     3  0.0592      0.999 0.012  0 0.988
#> SRR1643227     3  0.0592      0.999 0.012  0 0.988
#> SRR1643228     3  0.0592      0.999 0.012  0 0.988
#> SRR1643229     3  0.0592      0.999 0.012  0 0.988
#> SRR1643230     3  0.0592      0.999 0.012  0 0.988
#> SRR1643231     3  0.0592      0.999 0.012  0 0.988
#> SRR1643232     3  0.0592      0.999 0.012  0 0.988
#> SRR1643233     3  0.0592      0.999 0.012  0 0.988
#> SRR1643234     3  0.0592      0.999 0.012  0 0.988
#> SRR1643235     3  0.0592      0.999 0.012  0 0.988
#> SRR1643236     3  0.0592      0.999 0.012  0 0.988
#> SRR1643237     3  0.0592      0.999 0.012  0 0.988
#> SRR1643238     3  0.0592      0.999 0.012  0 0.988
#> SRR1643239     3  0.0592      0.999 0.012  0 0.988
#> SRR1643240     3  0.0592      0.999 0.012  0 0.988
#> SRR1643241     3  0.0592      0.999 0.012  0 0.988
#> SRR1643242     3  0.0747      0.995 0.016  0 0.984
#> SRR1643243     3  0.0747      0.995 0.016  0 0.984
#> SRR1643245     3  0.0747      0.995 0.016  0 0.984
#> SRR1643246     3  0.0747      0.995 0.016  0 0.984
#> SRR1643247     3  0.0747      0.995 0.016  0 0.984
#> SRR1643248     3  0.0592      0.999 0.012  0 0.988
#> SRR1643249     3  0.1163      0.985 0.028  0 0.972
#> SRR1643250     1  0.0237      0.943 0.996  0 0.004
#> SRR1643251     1  0.0237      0.943 0.996  0 0.004
#> SRR1643252     1  0.0237      0.943 0.996  0 0.004
#> SRR1643253     1  0.0237      0.943 0.996  0 0.004
#> SRR1643254     1  0.0237      0.943 0.996  0 0.004
#> SRR1643255     1  0.0237      0.943 0.996  0 0.004
#> SRR1643256     1  0.0237      0.943 0.996  0 0.004
#> SRR1643257     1  0.0237      0.943 0.996  0 0.004
#> SRR1643258     1  0.0237      0.943 0.996  0 0.004
#> SRR1643259     1  0.0237      0.943 0.996  0 0.004
#> SRR1643260     1  0.0237      0.943 0.996  0 0.004
#> SRR1643261     1  0.0237      0.943 0.996  0 0.004
#> SRR1643262     1  0.0237      0.943 0.996  0 0.004
#> SRR1643263     1  0.0237      0.943 0.996  0 0.004
#> SRR1643264     1  0.0237      0.943 0.996  0 0.004
#> SRR1643266     1  0.0237      0.943 0.996  0 0.004
#> SRR1643267     1  0.0237      0.943 0.996  0 0.004
#> SRR1643268     1  0.0237      0.943 0.996  0 0.004
#> SRR1643269     1  0.0237      0.943 0.996  0 0.004
#> SRR1643270     1  0.0237      0.943 0.996  0 0.004
#> SRR1643271     1  0.0237      0.943 0.996  0 0.004
#> SRR1643272     1  0.0237      0.943 0.996  0 0.004
#> SRR1643273     1  0.0237      0.943 0.996  0 0.004
#> SRR1643274     1  0.0237      0.943 0.996  0 0.004
#> SRR1643275     1  0.0237      0.943 0.996  0 0.004
#> SRR1643276     1  0.0237      0.943 0.996  0 0.004
#> SRR1643277     1  0.0237      0.943 0.996  0 0.004
#> SRR1643278     1  0.0237      0.943 0.996  0 0.004
#> SRR1643279     1  0.0237      0.943 0.996  0 0.004
#> SRR1643280     1  0.0237      0.943 0.996  0 0.004
#> SRR1643281     1  0.0237      0.943 0.996  0 0.004
#> SRR1643282     1  0.0237      0.943 0.996  0 0.004
#> SRR1643283     1  0.0237      0.943 0.996  0 0.004
#> SRR1643284     1  0.0237      0.943 0.996  0 0.004
#> SRR1643285     1  0.0237      0.943 0.996  0 0.004
#> SRR1643286     1  0.0237      0.943 0.996  0 0.004
#> SRR1643287     1  0.3116      0.859 0.892  0 0.108
#> SRR1643288     1  0.3116      0.859 0.892  0 0.108
#> SRR1643289     1  0.3116      0.859 0.892  0 0.108
#> SRR1643290     1  0.3038      0.863 0.896  0 0.104
#> SRR1643291     1  0.3192      0.855 0.888  0 0.112
#> SRR1643292     1  0.2959      0.867 0.900  0 0.100
#> SRR1643293     1  0.3116      0.859 0.892  0 0.108
#> SRR1643294     1  0.3038      0.863 0.896  0 0.104
#> SRR1643295     1  0.3038      0.863 0.896  0 0.104
#> SRR1643296     1  0.2959      0.867 0.900  0 0.100
#> SRR1643297     1  0.3116      0.859 0.892  0 0.108
#> SRR1643298     1  0.3116      0.859 0.892  0 0.108
#> SRR1643299     1  0.3116      0.859 0.892  0 0.108
#> SRR1643300     1  0.3038      0.863 0.896  0 0.104
#> SRR1643301     1  0.0237      0.943 0.996  0 0.004
#> SRR1643302     1  0.0237      0.943 0.996  0 0.004
#> SRR1643303     1  0.0237      0.943 0.996  0 0.004
#> SRR1643304     1  0.0237      0.943 0.996  0 0.004
#> SRR1643305     1  0.0237      0.943 0.996  0 0.004
#> SRR1643306     1  0.0237      0.943 0.996  0 0.004
#> SRR1643307     1  0.0237      0.943 0.996  0 0.004
#> SRR1643308     1  0.0237      0.943 0.996  0 0.004
#> SRR1643309     1  0.0237      0.943 0.996  0 0.004
#> SRR1643310     1  0.0237      0.943 0.996  0 0.004
#> SRR1643311     1  0.0237      0.943 0.996  0 0.004
#> SRR1643312     1  0.0237      0.943 0.996  0 0.004
#> SRR1643313     1  0.0237      0.943 0.996  0 0.004
#> SRR1643314     1  0.0424      0.942 0.992  0 0.008
#> SRR1643315     1  0.0424      0.942 0.992  0 0.008
#> SRR1643316     1  0.0424      0.942 0.992  0 0.008
#> SRR1643317     1  0.0424      0.942 0.992  0 0.008
#> SRR1643318     1  0.0237      0.943 0.996  0 0.004
#> SRR1643319     1  0.0237      0.943 0.996  0 0.004
#> SRR1643320     1  0.0424      0.942 0.992  0 0.008
#> SRR1643321     1  0.0424      0.942 0.992  0 0.008
#> SRR1643322     1  0.0424      0.942 0.992  0 0.008
#> SRR1643323     1  0.0237      0.943 0.996  0 0.004
#> SRR1643324     1  0.0237      0.943 0.996  0 0.004
#> SRR1643325     1  0.0424      0.942 0.992  0 0.008
#> SRR1643326     1  0.0237      0.943 0.996  0 0.004
#> SRR1643327     1  0.0424      0.942 0.992  0 0.008
#> SRR1643328     1  0.0747      0.937 0.984  0 0.016
#> SRR1643329     1  0.0747      0.937 0.984  0 0.016
#> SRR1643330     1  0.0747      0.937 0.984  0 0.016
#> SRR1643331     1  0.0747      0.937 0.984  0 0.016
#> SRR1643332     1  0.0747      0.937 0.984  0 0.016
#> SRR1643333     1  0.0747      0.937 0.984  0 0.016
#> SRR1643334     1  0.0592      0.938 0.988  0 0.012
#> SRR1643335     1  0.0592      0.938 0.988  0 0.012
#> SRR1643336     1  0.0747      0.937 0.984  0 0.016
#> SRR1643337     1  0.0747      0.937 0.984  0 0.016
#> SRR1643338     1  0.0747      0.937 0.984  0 0.016
#> SRR1643339     1  0.0747      0.937 0.984  0 0.016
#> SRR1643340     1  0.0747      0.937 0.984  0 0.016
#> SRR1643341     1  0.0747      0.937 0.984  0 0.016
#> SRR1643342     1  0.0747      0.937 0.984  0 0.016
#> SRR1643343     1  0.0000      0.942 1.000  0 0.000
#> SRR1643344     1  0.0000      0.942 1.000  0 0.000
#> SRR1643345     1  0.0000      0.942 1.000  0 0.000
#> SRR1643346     1  0.0000      0.942 1.000  0 0.000
#> SRR1643347     1  0.0000      0.942 1.000  0 0.000
#> SRR1643348     1  0.0000      0.942 1.000  0 0.000
#> SRR1643349     1  0.0000      0.942 1.000  0 0.000
#> SRR1643350     1  0.0000      0.942 1.000  0 0.000
#> SRR1643351     1  0.0000      0.942 1.000  0 0.000
#> SRR1643352     1  0.0000      0.942 1.000  0 0.000
#> SRR1643353     1  0.0000      0.942 1.000  0 0.000
#> SRR1643354     1  0.0000      0.942 1.000  0 0.000
#> SRR1643355     1  0.0000      0.942 1.000  0 0.000
#> SRR1643356     1  0.0000      0.942 1.000  0 0.000
#> SRR1643357     1  0.0000      0.942 1.000  0 0.000
#> SRR1643358     1  0.0237      0.943 0.996  0 0.004
#> SRR1643359     1  0.0237      0.943 0.996  0 0.004
#> SRR1643360     1  0.0237      0.943 0.996  0 0.004
#> SRR1643361     1  0.0237      0.943 0.996  0 0.004
#> SRR1643362     1  0.0237      0.943 0.996  0 0.004
#> SRR1643363     1  0.0237      0.943 0.996  0 0.004
#> SRR1643364     1  0.0237      0.943 0.996  0 0.004
#> SRR1643365     1  0.0237      0.943 0.996  0 0.004
#> SRR1643366     1  0.0237      0.943 0.996  0 0.004
#> SRR1643367     1  0.0237      0.943 0.996  0 0.004
#> SRR1643368     1  0.0237      0.943 0.996  0 0.004
#> SRR1643369     1  0.0237      0.943 0.996  0 0.004
#> SRR1643370     1  0.0237      0.943 0.996  0 0.004
#> SRR1643371     1  0.0237      0.943 0.996  0 0.004
#> SRR1643372     1  0.0237      0.943 0.996  0 0.004
#> SRR1643373     1  0.0237      0.943 0.996  0 0.004
#> SRR1643374     1  0.0237      0.943 0.996  0 0.004
#> SRR1643375     1  0.0237      0.943 0.996  0 0.004
#> SRR1643376     1  0.0237      0.943 0.996  0 0.004
#> SRR1643377     1  0.0237      0.943 0.996  0 0.004
#> SRR1643378     1  0.0237      0.943 0.996  0 0.004
#> SRR1643379     1  0.0237      0.943 0.996  0 0.004
#> SRR1643380     1  0.0237      0.943 0.996  0 0.004
#> SRR1643381     1  0.0237      0.943 0.996  0 0.004
#> SRR1643382     1  0.0237      0.943 0.996  0 0.004
#> SRR1643383     1  0.0237      0.943 0.996  0 0.004
#> SRR1643384     1  0.0237      0.943 0.996  0 0.004
#> SRR1643385     1  0.0237      0.943 0.996  0 0.004
#> SRR1643386     1  0.0237      0.943 0.996  0 0.004
#> SRR1643387     1  0.0237      0.943 0.996  0 0.004
#> SRR1643388     1  0.0237      0.943 0.996  0 0.004
#> SRR1643389     1  0.0237      0.943 0.996  0 0.004
#> SRR1643390     1  0.0592      0.938 0.988  0 0.012
#> SRR1643391     1  0.0592      0.938 0.988  0 0.012
#> SRR1643392     1  0.0592      0.938 0.988  0 0.012
#> SRR1643393     1  0.0592      0.938 0.988  0 0.012
#> SRR1643394     1  0.0592      0.938 0.988  0 0.012
#> SRR1643395     1  0.0592      0.938 0.988  0 0.012
#> SRR1643396     1  0.0592      0.938 0.988  0 0.012
#> SRR1643397     1  0.0592      0.938 0.988  0 0.012
#> SRR1643398     1  0.0592      0.938 0.988  0 0.012
#> SRR1643399     1  0.0592      0.938 0.988  0 0.012
#> SRR1643400     1  0.0592      0.938 0.988  0 0.012
#> SRR1643401     1  0.0592      0.938 0.988  0 0.012
#> SRR1643402     1  0.0592      0.938 0.988  0 0.012
#> SRR1643403     1  0.0592      0.938 0.988  0 0.012
#> SRR1643404     1  0.0592      0.938 0.988  0 0.012
#> SRR1643405     1  0.0592      0.938 0.988  0 0.012
#> SRR1643406     1  0.0592      0.938 0.988  0 0.012
#> SRR1643407     1  0.0592      0.938 0.988  0 0.012
#> SRR1643408     1  0.0592      0.938 0.988  0 0.012
#> SRR1643409     1  0.0592      0.938 0.988  0 0.012
#> SRR1643410     1  0.0592      0.938 0.988  0 0.012
#> SRR1643411     1  0.0592      0.938 0.988  0 0.012
#> SRR1643412     1  0.0592      0.938 0.988  0 0.012
#> SRR1643413     1  0.0592      0.938 0.988  0 0.012
#> SRR1643414     1  0.0592      0.938 0.988  0 0.012
#> SRR1643415     1  0.0592      0.938 0.988  0 0.012
#> SRR1643416     1  0.0592      0.938 0.988  0 0.012
#> SRR1643417     1  0.0592      0.938 0.988  0 0.012
#> SRR1643418     1  0.6111      0.428 0.604  0 0.396
#> SRR1643419     1  0.6111      0.428 0.604  0 0.396
#> SRR1643420     1  0.6111      0.428 0.604  0 0.396
#> SRR1643421     1  0.6111      0.428 0.604  0 0.396
#> SRR1643422     1  0.6111      0.428 0.604  0 0.396
#> SRR1643423     1  0.6111      0.428 0.604  0 0.396
#> SRR1643424     1  0.6111      0.428 0.604  0 0.396
#> SRR1643425     1  0.6111      0.428 0.604  0 0.396
#> SRR1643426     1  0.6111      0.428 0.604  0 0.396
#> SRR1643427     1  0.6111      0.428 0.604  0 0.396
#> SRR1643428     1  0.6111      0.428 0.604  0 0.396
#> SRR1643429     1  0.6111      0.428 0.604  0 0.396
#> SRR1643430     1  0.6111      0.428 0.604  0 0.396
#> SRR1643431     1  0.6111      0.428 0.604  0 0.396
#> SRR1643432     1  0.6111      0.428 0.604  0 0.396
#> SRR1643433     1  0.6111      0.428 0.604  0 0.396
#> SRR1643434     1  0.6111      0.428 0.604  0 0.396
#> SRR1643435     1  0.6111      0.428 0.604  0 0.396
#> SRR1643436     1  0.6111      0.428 0.604  0 0.396
#> SRR1643437     1  0.6111      0.428 0.604  0 0.396
#> SRR1643438     1  0.6111      0.428 0.604  0 0.396
#> SRR1643439     1  0.6111      0.428 0.604  0 0.396
#> SRR1643440     1  0.6111      0.428 0.604  0 0.396
#> SRR1643441     1  0.6111      0.428 0.604  0 0.396
#> SRR1643442     1  0.6111      0.428 0.604  0 0.396
#> SRR1643443     2  0.0000      1.000 0.000  1 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1 0.000
#> SRR1643505     2  0.0000      1.000 0.000  1 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1 0.000

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1    p2    p3    p4
#> SRR1643167     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643168     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643169     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643170     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643171     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643172     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643173     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643174     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643175     1  0.4972      0.313 0.544 0.000 0.000 0.456
#> SRR1643176     1  0.4972      0.313 0.544 0.000 0.000 0.456
#> SRR1643177     1  0.4972      0.313 0.544 0.000 0.000 0.456
#> SRR1643178     1  0.4972      0.313 0.544 0.000 0.000 0.456
#> SRR1643180     1  0.0592      0.838 0.984 0.000 0.000 0.016
#> SRR1643181     1  0.0592      0.838 0.984 0.000 0.000 0.016
#> SRR1643182     1  0.0592      0.838 0.984 0.000 0.000 0.016
#> SRR1643183     1  0.0592      0.838 0.984 0.000 0.000 0.016
#> SRR1643184     1  0.0592      0.838 0.984 0.000 0.000 0.016
#> SRR1643185     1  0.0592      0.838 0.984 0.000 0.000 0.016
#> SRR1643186     1  0.0592      0.838 0.984 0.000 0.000 0.016
#> SRR1643187     1  0.4331      0.654 0.712 0.000 0.000 0.288
#> SRR1643188     1  0.4331      0.654 0.712 0.000 0.000 0.288
#> SRR1643189     1  0.4331      0.654 0.712 0.000 0.000 0.288
#> SRR1643190     1  0.4331      0.654 0.712 0.000 0.000 0.288
#> SRR1643191     1  0.4477      0.627 0.688 0.000 0.000 0.312
#> SRR1643192     1  0.4477      0.627 0.688 0.000 0.000 0.312
#> SRR1643193     1  0.4331      0.654 0.712 0.000 0.000 0.288
#> SRR1643194     1  0.4331      0.654 0.712 0.000 0.000 0.288
#> SRR1643195     4  0.3486      0.735 0.188 0.000 0.000 0.812
#> SRR1643196     4  0.3400      0.742 0.180 0.000 0.000 0.820
#> SRR1643197     1  0.4477      0.627 0.688 0.000 0.000 0.312
#> SRR1643198     1  0.4477      0.627 0.688 0.000 0.000 0.312
#> SRR1643199     1  0.4356      0.653 0.708 0.000 0.000 0.292
#> SRR1643200     1  0.4356      0.653 0.708 0.000 0.000 0.292
#> SRR1643201     1  0.4331      0.654 0.712 0.000 0.000 0.288
#> SRR1643202     1  0.4331      0.654 0.712 0.000 0.000 0.288
#> SRR1643203     1  0.4072      0.689 0.748 0.000 0.000 0.252
#> SRR1643204     1  0.4072      0.689 0.748 0.000 0.000 0.252
#> SRR1643205     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643206     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643207     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643208     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643209     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643210     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643211     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643212     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643213     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643214     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643215     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643216     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643217     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643218     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643219     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643220     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643221     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643222     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643223     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643224     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643225     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643226     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643227     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643228     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643229     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643230     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643231     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643232     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643233     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643234     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643235     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643236     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643237     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643238     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643239     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643240     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643241     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643242     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643243     3  0.0188      0.997 0.004 0.000 0.996 0.000
#> SRR1643245     3  0.0188      0.997 0.004 0.000 0.996 0.000
#> SRR1643246     3  0.0188      0.997 0.004 0.000 0.996 0.000
#> SRR1643247     3  0.0188      0.997 0.004 0.000 0.996 0.000
#> SRR1643248     3  0.0000      0.999 0.000 0.000 1.000 0.000
#> SRR1643249     3  0.0524      0.984 0.008 0.000 0.988 0.004
#> SRR1643250     4  0.1389      0.843 0.048 0.000 0.000 0.952
#> SRR1643251     4  0.1118      0.849 0.036 0.000 0.000 0.964
#> SRR1643252     4  0.0921      0.853 0.028 0.000 0.000 0.972
#> SRR1643253     4  0.1302      0.845 0.044 0.000 0.000 0.956
#> SRR1643254     4  0.0707      0.856 0.020 0.000 0.000 0.980
#> SRR1643255     4  0.1022      0.851 0.032 0.000 0.000 0.968
#> SRR1643256     4  0.0707      0.856 0.020 0.000 0.000 0.980
#> SRR1643257     4  0.1211      0.847 0.040 0.000 0.000 0.960
#> SRR1643258     4  0.1474      0.840 0.052 0.000 0.000 0.948
#> SRR1643259     4  0.1389      0.843 0.048 0.000 0.000 0.952
#> SRR1643260     4  0.0707      0.856 0.020 0.000 0.000 0.980
#> SRR1643261     4  0.1474      0.841 0.052 0.000 0.000 0.948
#> SRR1643262     4  0.0188      0.862 0.004 0.000 0.000 0.996
#> SRR1643263     4  0.0188      0.862 0.004 0.000 0.000 0.996
#> SRR1643264     4  0.1118      0.849 0.036 0.000 0.000 0.964
#> SRR1643266     4  0.0188      0.862 0.004 0.000 0.000 0.996
#> SRR1643267     4  0.0336      0.861 0.008 0.000 0.000 0.992
#> SRR1643268     4  0.0188      0.862 0.004 0.000 0.000 0.996
#> SRR1643269     4  0.0188      0.862 0.004 0.000 0.000 0.996
#> SRR1643270     4  0.1637      0.835 0.060 0.000 0.000 0.940
#> SRR1643271     4  0.0188      0.862 0.004 0.000 0.000 0.996
#> SRR1643272     4  0.0188      0.862 0.004 0.000 0.000 0.996
#> SRR1643273     4  0.4564      0.579 0.328 0.000 0.000 0.672
#> SRR1643274     4  0.4564      0.579 0.328 0.000 0.000 0.672
#> SRR1643275     4  0.4564      0.579 0.328 0.000 0.000 0.672
#> SRR1643276     4  0.4564      0.579 0.328 0.000 0.000 0.672
#> SRR1643277     4  0.4564      0.579 0.328 0.000 0.000 0.672
#> SRR1643278     4  0.4564      0.579 0.328 0.000 0.000 0.672
#> SRR1643279     4  0.4564      0.579 0.328 0.000 0.000 0.672
#> SRR1643280     4  0.4564      0.579 0.328 0.000 0.000 0.672
#> SRR1643281     4  0.4564      0.579 0.328 0.000 0.000 0.672
#> SRR1643282     4  0.4564      0.579 0.328 0.000 0.000 0.672
#> SRR1643283     4  0.4564      0.579 0.328 0.000 0.000 0.672
#> SRR1643284     4  0.4564      0.579 0.328 0.000 0.000 0.672
#> SRR1643285     4  0.4564      0.579 0.328 0.000 0.000 0.672
#> SRR1643286     4  0.4564      0.579 0.328 0.000 0.000 0.672
#> SRR1643287     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643288     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643289     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643290     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643291     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643292     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643293     4  0.0188      0.862 0.004 0.000 0.000 0.996
#> SRR1643294     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643295     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643296     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643297     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643298     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643299     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643300     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643301     4  0.4564      0.579 0.328 0.000 0.000 0.672
#> SRR1643302     4  0.4500      0.598 0.316 0.000 0.000 0.684
#> SRR1643303     4  0.4500      0.598 0.316 0.000 0.000 0.684
#> SRR1643304     4  0.4522      0.592 0.320 0.000 0.000 0.680
#> SRR1643305     4  0.4543      0.586 0.324 0.000 0.000 0.676
#> SRR1643306     4  0.4564      0.579 0.328 0.000 0.000 0.672
#> SRR1643307     4  0.4564      0.579 0.328 0.000 0.000 0.672
#> SRR1643308     4  0.4543      0.586 0.324 0.000 0.000 0.676
#> SRR1643309     4  0.4477      0.604 0.312 0.000 0.000 0.688
#> SRR1643310     4  0.4543      0.586 0.324 0.000 0.000 0.676
#> SRR1643311     4  0.4543      0.586 0.324 0.000 0.000 0.676
#> SRR1643312     4  0.4543      0.586 0.324 0.000 0.000 0.676
#> SRR1643313     4  0.4522      0.592 0.320 0.000 0.000 0.680
#> SRR1643314     4  0.4500      0.597 0.316 0.000 0.000 0.684
#> SRR1643315     4  0.4522      0.591 0.320 0.000 0.000 0.680
#> SRR1643316     4  0.4477      0.603 0.312 0.000 0.000 0.688
#> SRR1643317     4  0.4477      0.602 0.312 0.000 0.000 0.688
#> SRR1643318     4  0.4543      0.586 0.324 0.000 0.000 0.676
#> SRR1643319     4  0.4543      0.586 0.324 0.000 0.000 0.676
#> SRR1643320     4  0.4454      0.607 0.308 0.000 0.000 0.692
#> SRR1643321     4  0.4454      0.607 0.308 0.000 0.000 0.692
#> SRR1643322     4  0.4477      0.602 0.312 0.000 0.000 0.688
#> SRR1643323     4  0.4477      0.603 0.312 0.000 0.000 0.688
#> SRR1643324     4  0.4522      0.591 0.320 0.000 0.000 0.680
#> SRR1643325     4  0.4522      0.592 0.320 0.000 0.000 0.680
#> SRR1643326     4  0.4500      0.597 0.316 0.000 0.000 0.684
#> SRR1643327     4  0.4500      0.597 0.316 0.000 0.000 0.684
#> SRR1643328     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643329     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643330     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643331     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643332     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643333     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643334     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643335     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643336     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643337     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643338     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643339     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643340     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643341     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643342     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643343     1  0.4500      0.614 0.684 0.000 0.000 0.316
#> SRR1643344     1  0.4477      0.620 0.688 0.000 0.000 0.312
#> SRR1643345     1  0.4522      0.607 0.680 0.000 0.000 0.320
#> SRR1643346     1  0.4500      0.614 0.684 0.000 0.000 0.316
#> SRR1643347     1  0.4522      0.607 0.680 0.000 0.000 0.320
#> SRR1643348     1  0.4500      0.614 0.684 0.000 0.000 0.316
#> SRR1643349     1  0.4500      0.614 0.684 0.000 0.000 0.316
#> SRR1643350     1  0.4500      0.614 0.684 0.000 0.000 0.316
#> SRR1643351     1  0.4522      0.607 0.680 0.000 0.000 0.320
#> SRR1643352     1  0.4522      0.607 0.680 0.000 0.000 0.320
#> SRR1643353     1  0.4522      0.607 0.680 0.000 0.000 0.320
#> SRR1643354     1  0.4522      0.607 0.680 0.000 0.000 0.320
#> SRR1643355     1  0.4522      0.607 0.680 0.000 0.000 0.320
#> SRR1643356     1  0.4543      0.599 0.676 0.000 0.000 0.324
#> SRR1643357     1  0.4522      0.607 0.680 0.000 0.000 0.320
#> SRR1643358     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643359     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643360     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643361     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643362     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643363     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643364     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643365     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643366     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643367     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643368     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643369     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643370     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643371     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643372     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643373     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643374     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643375     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643376     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643377     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643378     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643379     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643380     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643381     4  0.2469      0.802 0.108 0.000 0.000 0.892
#> SRR1643382     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643383     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643384     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643385     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643386     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643387     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643388     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643389     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643390     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643391     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643392     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643393     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643394     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643395     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643396     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643397     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643398     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643399     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643400     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643401     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643402     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643403     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643404     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643405     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643406     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643407     1  0.0469      0.841 0.988 0.000 0.000 0.012
#> SRR1643408     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643409     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643410     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643411     1  0.0469      0.841 0.988 0.000 0.000 0.012
#> SRR1643412     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643413     1  0.0469      0.841 0.988 0.000 0.000 0.012
#> SRR1643414     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643415     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643416     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643417     1  0.0336      0.842 0.992 0.000 0.000 0.008
#> SRR1643418     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643419     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643420     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643421     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643422     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643423     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643424     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643425     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643426     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643427     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643428     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643429     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643430     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643431     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643432     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643433     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643434     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643435     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643436     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643437     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643438     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643439     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643440     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643441     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643442     4  0.0000      0.863 0.000 0.000 0.000 1.000
#> SRR1643443     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643444     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643445     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643446     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643447     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643448     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643449     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643450     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643451     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643452     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643453     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643454     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643455     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643456     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643457     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643458     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643459     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643460     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643461     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643462     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643463     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643464     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643466     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643467     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643468     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643469     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643470     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643471     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643472     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643473     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643474     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643475     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643477     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643478     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643479     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643480     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643481     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643482     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643483     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643484     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643485     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643486     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643487     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643488     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643489     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643490     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643491     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643492     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643493     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643494     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643495     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643496     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643497     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643498     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643499     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643500     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643501     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643502     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643503     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643504     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643505     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643506     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643507     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643508     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643509     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643510     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643511     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643512     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643513     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643531     2  0.0336      0.996 0.008 0.992 0.000 0.000
#> SRR1643532     2  0.0336      0.996 0.008 0.992 0.000 0.000
#> SRR1643533     2  0.0336      0.996 0.008 0.992 0.000 0.000
#> SRR1643534     2  0.0336      0.996 0.008 0.992 0.000 0.000
#> SRR1643535     2  0.0336      0.996 0.008 0.992 0.000 0.000
#> SRR1643536     2  0.0336      0.996 0.008 0.992 0.000 0.000
#> SRR1643537     2  0.0336      0.996 0.008 0.992 0.000 0.000
#> SRR1643538     2  0.0336      0.996 0.008 0.992 0.000 0.000
#> SRR1643539     2  0.0336      0.996 0.008 0.992 0.000 0.000
#> SRR1643540     2  0.0336      0.996 0.008 0.992 0.000 0.000
#> SRR1643541     2  0.0336      0.996 0.008 0.992 0.000 0.000
#> SRR1643542     2  0.0336      0.996 0.008 0.992 0.000 0.000
#> SRR1643543     2  0.0336      0.996 0.008 0.992 0.000 0.000
#> SRR1643544     2  0.0336      0.996 0.008 0.992 0.000 0.000
#> SRR1643514     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643515     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643516     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643517     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643518     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643519     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643520     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643521     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643522     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643523     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643524     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643525     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643526     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643527     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643528     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643529     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643530     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643545     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643546     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643547     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643548     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643549     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643550     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643551     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643552     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643553     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643554     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643555     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643556     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643558     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643559     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643560     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643561     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643562     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643563     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643564     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643565     2  0.0000      0.998 0.000 1.000 0.000 0.000
#> SRR1643566     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643567     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643568     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643569     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643570     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643571     2  0.0188      0.998 0.004 0.996 0.000 0.000
#> SRR1643572     2  0.0188      0.998 0.004 0.996 0.000 0.000

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1    p2   p3    p4    p5
#> SRR1643167     5  0.2648      0.917 0.152 0.000 0.00 0.000 0.848
#> SRR1643168     5  0.2690      0.911 0.156 0.000 0.00 0.000 0.844
#> SRR1643169     5  0.2648      0.917 0.152 0.000 0.00 0.000 0.848
#> SRR1643170     5  0.2690      0.911 0.156 0.000 0.00 0.000 0.844
#> SRR1643171     5  0.1851      0.978 0.088 0.000 0.00 0.000 0.912
#> SRR1643172     5  0.1851      0.978 0.088 0.000 0.00 0.000 0.912
#> SRR1643173     5  0.1851      0.978 0.088 0.000 0.00 0.000 0.912
#> SRR1643174     5  0.1851      0.978 0.088 0.000 0.00 0.000 0.912
#> SRR1643175     1  0.2824      0.847 0.864 0.000 0.00 0.116 0.020
#> SRR1643176     1  0.2824      0.847 0.864 0.000 0.00 0.116 0.020
#> SRR1643177     1  0.2824      0.847 0.864 0.000 0.00 0.116 0.020
#> SRR1643178     1  0.2824      0.847 0.864 0.000 0.00 0.116 0.020
#> SRR1643180     5  0.2516      0.934 0.140 0.000 0.00 0.000 0.860
#> SRR1643181     5  0.2605      0.925 0.148 0.000 0.00 0.000 0.852
#> SRR1643182     5  0.2561      0.930 0.144 0.000 0.00 0.000 0.856
#> SRR1643183     5  0.2280      0.954 0.120 0.000 0.00 0.000 0.880
#> SRR1643184     5  0.2230      0.958 0.116 0.000 0.00 0.000 0.884
#> SRR1643185     5  0.2280      0.954 0.120 0.000 0.00 0.000 0.880
#> SRR1643186     5  0.2179      0.961 0.112 0.000 0.00 0.000 0.888
#> SRR1643187     1  0.2690      0.781 0.844 0.000 0.00 0.000 0.156
#> SRR1643188     1  0.2690      0.781 0.844 0.000 0.00 0.000 0.156
#> SRR1643189     1  0.2690      0.781 0.844 0.000 0.00 0.000 0.156
#> SRR1643190     1  0.2690      0.781 0.844 0.000 0.00 0.000 0.156
#> SRR1643191     1  0.2806      0.799 0.844 0.000 0.00 0.004 0.152
#> SRR1643192     1  0.2806      0.799 0.844 0.000 0.00 0.004 0.152
#> SRR1643193     1  0.2516      0.795 0.860 0.000 0.00 0.000 0.140
#> SRR1643194     1  0.2516      0.795 0.860 0.000 0.00 0.000 0.140
#> SRR1643195     4  0.3612      0.627 0.268 0.000 0.00 0.732 0.000
#> SRR1643196     4  0.3452      0.676 0.244 0.000 0.00 0.756 0.000
#> SRR1643197     1  0.2763      0.803 0.848 0.000 0.00 0.004 0.148
#> SRR1643198     1  0.2806      0.799 0.844 0.000 0.00 0.004 0.152
#> SRR1643199     1  0.2732      0.790 0.840 0.000 0.00 0.000 0.160
#> SRR1643200     1  0.2732      0.790 0.840 0.000 0.00 0.000 0.160
#> SRR1643201     1  0.1410      0.846 0.940 0.000 0.00 0.000 0.060
#> SRR1643202     1  0.1410      0.846 0.940 0.000 0.00 0.000 0.060
#> SRR1643203     1  0.2732      0.777 0.840 0.000 0.00 0.000 0.160
#> SRR1643204     1  0.2732      0.777 0.840 0.000 0.00 0.000 0.160
#> SRR1643205     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643206     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643207     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643208     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643209     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643210     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643211     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643212     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643213     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643214     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643215     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643216     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643217     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643218     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643219     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643220     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643221     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643222     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643223     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643224     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643225     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643226     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643227     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643228     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643229     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643230     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643231     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643232     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643233     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643234     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643235     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643236     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643237     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643238     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643239     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643240     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643241     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643242     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643243     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643245     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643246     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643247     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643248     3  0.0000      0.999 0.000 0.000 1.00 0.000 0.000
#> SRR1643249     3  0.0671      0.975 0.016 0.000 0.98 0.000 0.004
#> SRR1643250     4  0.1341      0.937 0.056 0.000 0.00 0.944 0.000
#> SRR1643251     4  0.1410      0.933 0.060 0.000 0.00 0.940 0.000
#> SRR1643252     4  0.1341      0.937 0.056 0.000 0.00 0.944 0.000
#> SRR1643253     4  0.1410      0.933 0.060 0.000 0.00 0.940 0.000
#> SRR1643254     4  0.1197      0.943 0.048 0.000 0.00 0.952 0.000
#> SRR1643255     4  0.1341      0.937 0.056 0.000 0.00 0.944 0.000
#> SRR1643256     4  0.1270      0.940 0.052 0.000 0.00 0.948 0.000
#> SRR1643257     4  0.1410      0.933 0.060 0.000 0.00 0.940 0.000
#> SRR1643258     4  0.1341      0.937 0.056 0.000 0.00 0.944 0.000
#> SRR1643259     4  0.1544      0.925 0.068 0.000 0.00 0.932 0.000
#> SRR1643260     4  0.1121      0.945 0.044 0.000 0.00 0.956 0.000
#> SRR1643261     4  0.1544      0.926 0.068 0.000 0.00 0.932 0.000
#> SRR1643262     4  0.0609      0.958 0.020 0.000 0.00 0.980 0.000
#> SRR1643263     4  0.0609      0.958 0.020 0.000 0.00 0.980 0.000
#> SRR1643264     4  0.1121      0.946 0.044 0.000 0.00 0.956 0.000
#> SRR1643266     4  0.0609      0.958 0.020 0.000 0.00 0.980 0.000
#> SRR1643267     4  0.0880      0.953 0.032 0.000 0.00 0.968 0.000
#> SRR1643268     4  0.0609      0.958 0.020 0.000 0.00 0.980 0.000
#> SRR1643269     4  0.0794      0.955 0.028 0.000 0.00 0.972 0.000
#> SRR1643270     4  0.1341      0.938 0.056 0.000 0.00 0.944 0.000
#> SRR1643271     4  0.0609      0.958 0.020 0.000 0.00 0.980 0.000
#> SRR1643272     4  0.0609      0.958 0.020 0.000 0.00 0.980 0.000
#> SRR1643273     1  0.2674      0.882 0.856 0.000 0.00 0.140 0.004
#> SRR1643274     1  0.2806      0.880 0.844 0.000 0.00 0.152 0.004
#> SRR1643275     1  0.3081      0.878 0.832 0.000 0.00 0.156 0.012
#> SRR1643276     1  0.2890      0.876 0.836 0.000 0.00 0.160 0.004
#> SRR1643277     1  0.3183      0.878 0.828 0.000 0.00 0.156 0.016
#> SRR1643278     1  0.2763      0.880 0.848 0.000 0.00 0.148 0.004
#> SRR1643279     1  0.2806      0.879 0.844 0.000 0.00 0.152 0.004
#> SRR1643280     1  0.2806      0.879 0.844 0.000 0.00 0.152 0.004
#> SRR1643281     1  0.2930      0.874 0.832 0.000 0.00 0.164 0.004
#> SRR1643282     1  0.2806      0.879 0.844 0.000 0.00 0.152 0.004
#> SRR1643283     1  0.2806      0.879 0.844 0.000 0.00 0.152 0.004
#> SRR1643284     1  0.3039      0.879 0.836 0.000 0.00 0.152 0.012
#> SRR1643285     1  0.2763      0.880 0.848 0.000 0.00 0.148 0.004
#> SRR1643286     1  0.3013      0.876 0.832 0.000 0.00 0.160 0.008
#> SRR1643287     4  0.0404      0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643288     4  0.0404      0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643289     4  0.0404      0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643290     4  0.0404      0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643291     4  0.0404      0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643292     4  0.0404      0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643293     4  0.0510      0.959 0.016 0.000 0.00 0.984 0.000
#> SRR1643294     4  0.0404      0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643295     4  0.0404      0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643296     4  0.0404      0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643297     4  0.0404      0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643298     4  0.0404      0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643299     4  0.0404      0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643300     4  0.0404      0.960 0.012 0.000 0.00 0.988 0.000
#> SRR1643301     1  0.3231      0.851 0.800 0.000 0.00 0.196 0.004
#> SRR1643302     1  0.3398      0.831 0.780 0.000 0.00 0.216 0.004
#> SRR1643303     1  0.3336      0.817 0.772 0.000 0.00 0.228 0.000
#> SRR1643304     1  0.3074      0.852 0.804 0.000 0.00 0.196 0.000
#> SRR1643305     1  0.2813      0.871 0.832 0.000 0.00 0.168 0.000
#> SRR1643306     1  0.2970      0.871 0.828 0.000 0.00 0.168 0.004
#> SRR1643307     1  0.3461      0.821 0.772 0.000 0.00 0.224 0.004
#> SRR1643308     1  0.3039      0.854 0.808 0.000 0.00 0.192 0.000
#> SRR1643309     1  0.3689      0.777 0.740 0.000 0.00 0.256 0.004
#> SRR1643310     1  0.2852      0.869 0.828 0.000 0.00 0.172 0.000
#> SRR1643311     1  0.2966      0.860 0.816 0.000 0.00 0.184 0.000
#> SRR1643312     1  0.2852      0.868 0.828 0.000 0.00 0.172 0.000
#> SRR1643313     1  0.3661      0.747 0.724 0.000 0.00 0.276 0.000
#> SRR1643314     1  0.2824      0.885 0.864 0.000 0.00 0.116 0.020
#> SRR1643315     1  0.2873      0.885 0.860 0.000 0.00 0.120 0.020
#> SRR1643316     1  0.3106      0.882 0.840 0.000 0.00 0.140 0.020
#> SRR1643317     1  0.2921      0.885 0.856 0.000 0.00 0.124 0.020
#> SRR1643318     1  0.2873      0.885 0.860 0.000 0.00 0.120 0.020
#> SRR1643319     1  0.3106      0.883 0.840 0.000 0.00 0.140 0.020
#> SRR1643320     1  0.3106      0.882 0.840 0.000 0.00 0.140 0.020
#> SRR1643321     1  0.2969      0.884 0.852 0.000 0.00 0.128 0.020
#> SRR1643322     1  0.2921      0.885 0.856 0.000 0.00 0.124 0.020
#> SRR1643323     1  0.2873      0.885 0.860 0.000 0.00 0.120 0.020
#> SRR1643324     1  0.3194      0.880 0.832 0.000 0.00 0.148 0.020
#> SRR1643325     1  0.2873      0.885 0.860 0.000 0.00 0.120 0.020
#> SRR1643326     1  0.2969      0.884 0.852 0.000 0.00 0.128 0.020
#> SRR1643327     1  0.2873      0.885 0.860 0.000 0.00 0.120 0.020
#> SRR1643328     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643329     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643330     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643331     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643332     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643333     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643334     5  0.2074      0.967 0.104 0.000 0.00 0.000 0.896
#> SRR1643335     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643336     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643337     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643338     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643339     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643340     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643341     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643342     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643343     1  0.1205      0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643344     1  0.1282      0.855 0.952 0.000 0.00 0.004 0.044
#> SRR1643345     1  0.1205      0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643346     1  0.1205      0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643347     1  0.1205      0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643348     1  0.1205      0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643349     1  0.1205      0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643350     1  0.1205      0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643351     1  0.1205      0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643352     1  0.1205      0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643353     1  0.1205      0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643354     1  0.1205      0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643355     1  0.1205      0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643356     1  0.1205      0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643357     1  0.1205      0.858 0.956 0.000 0.00 0.004 0.040
#> SRR1643358     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643359     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643360     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643361     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643362     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643363     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643364     4  0.0510      0.960 0.016 0.000 0.00 0.984 0.000
#> SRR1643365     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643366     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643367     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643368     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643369     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643370     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643371     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643372     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643373     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643374     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643375     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643376     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643377     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643378     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643379     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643380     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643381     4  0.2722      0.868 0.108 0.000 0.00 0.872 0.020
#> SRR1643382     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643383     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643384     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643385     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643386     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643387     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643388     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643389     4  0.0290      0.961 0.008 0.000 0.00 0.992 0.000
#> SRR1643390     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643391     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643392     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643393     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643394     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643395     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643396     5  0.1732      0.982 0.080 0.000 0.00 0.000 0.920
#> SRR1643397     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643398     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643399     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643400     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643401     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643402     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643403     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643404     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643405     5  0.1792      0.980 0.084 0.000 0.00 0.000 0.916
#> SRR1643406     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643407     5  0.2068      0.973 0.092 0.000 0.00 0.004 0.904
#> SRR1643408     5  0.1908      0.975 0.092 0.000 0.00 0.000 0.908
#> SRR1643409     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643410     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643411     5  0.1892      0.979 0.080 0.000 0.00 0.004 0.916
#> SRR1643412     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643413     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643414     5  0.1851      0.979 0.088 0.000 0.00 0.000 0.912
#> SRR1643415     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643416     5  0.1732      0.982 0.080 0.000 0.00 0.000 0.920
#> SRR1643417     5  0.1671      0.983 0.076 0.000 0.00 0.000 0.924
#> SRR1643418     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643419     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643420     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643421     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643422     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643423     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643424     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643425     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643426     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643427     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643428     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643429     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643430     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643431     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643432     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643433     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643434     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643435     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643436     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643437     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643438     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643439     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643440     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643441     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643442     4  0.2036      0.932 0.024 0.000 0.00 0.920 0.056
#> SRR1643443     2  0.0912      0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643444     2  0.0912      0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643445     2  0.0912      0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643446     2  0.0912      0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643447     2  0.0912      0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643448     2  0.0912      0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643449     2  0.0912      0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643450     2  0.0912      0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643451     2  0.0912      0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643452     2  0.0912      0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643453     2  0.0912      0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643454     2  0.0912      0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643455     2  0.0912      0.985 0.012 0.972 0.00 0.000 0.016
#> SRR1643456     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643457     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643458     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643459     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643460     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643461     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643462     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643463     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643464     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643466     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643467     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643468     2  0.0566      0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643469     2  0.0566      0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643470     2  0.0566      0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643471     2  0.0566      0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643472     2  0.0566      0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643473     2  0.0566      0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643474     2  0.0566      0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643475     2  0.0566      0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643477     2  0.0566      0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643478     2  0.0566      0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643479     2  0.0566      0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643480     2  0.0566      0.983 0.012 0.984 0.00 0.000 0.004
#> SRR1643481     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643482     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643483     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643484     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643485     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643486     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643487     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643488     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643489     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643490     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643491     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643492     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643493     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643494     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643495     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643496     2  0.0451      0.984 0.008 0.988 0.00 0.000 0.004
#> SRR1643497     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643498     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643499     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643500     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643501     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643502     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643503     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643504     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643505     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643506     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643507     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643508     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643509     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643510     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643511     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643512     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643513     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643531     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643532     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643533     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643534     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643535     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643536     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643537     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643538     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643539     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643540     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643541     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643542     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643543     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643544     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643514     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643515     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643516     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643517     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643518     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643519     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643520     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643521     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643522     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643523     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643524     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643525     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643526     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643527     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643528     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643529     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643530     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643545     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643546     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643547     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643548     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643549     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643550     2  0.0404      0.987 0.000 0.988 0.00 0.000 0.012
#> SRR1643551     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643552     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643553     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643554     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643555     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643556     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643558     2  0.0162      0.986 0.004 0.996 0.00 0.000 0.000
#> SRR1643559     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643560     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643561     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643562     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643563     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643564     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643565     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643566     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643567     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643568     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643569     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643570     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643571     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016
#> SRR1643572     2  0.0798      0.986 0.008 0.976 0.00 0.000 0.016

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2    p3    p4    p5    p6
#> SRR1643167     6  0.1863    0.90123 0.104 0.000 0.000 0.000 0.000 0.896
#> SRR1643168     6  0.1863    0.90129 0.104 0.000 0.000 0.000 0.000 0.896
#> SRR1643169     6  0.1957    0.89124 0.112 0.000 0.000 0.000 0.000 0.888
#> SRR1643170     6  0.1863    0.90123 0.104 0.000 0.000 0.000 0.000 0.896
#> SRR1643171     6  0.0458    0.97382 0.016 0.000 0.000 0.000 0.000 0.984
#> SRR1643172     6  0.0458    0.97382 0.016 0.000 0.000 0.000 0.000 0.984
#> SRR1643173     6  0.0547    0.97227 0.020 0.000 0.000 0.000 0.000 0.980
#> SRR1643174     6  0.0547    0.97227 0.020 0.000 0.000 0.000 0.000 0.980
#> SRR1643175     1  0.1007    0.87611 0.956 0.000 0.000 0.044 0.000 0.000
#> SRR1643176     1  0.1007    0.87611 0.956 0.000 0.000 0.044 0.000 0.000
#> SRR1643177     1  0.0937    0.87614 0.960 0.000 0.000 0.040 0.000 0.000
#> SRR1643178     1  0.0937    0.87614 0.960 0.000 0.000 0.040 0.000 0.000
#> SRR1643180     6  0.2003    0.89078 0.116 0.000 0.000 0.000 0.000 0.884
#> SRR1643181     6  0.2003    0.89078 0.116 0.000 0.000 0.000 0.000 0.884
#> SRR1643182     6  0.2003    0.89078 0.116 0.000 0.000 0.000 0.000 0.884
#> SRR1643183     6  0.1663    0.92144 0.088 0.000 0.000 0.000 0.000 0.912
#> SRR1643184     6  0.1663    0.92144 0.088 0.000 0.000 0.000 0.000 0.912
#> SRR1643185     6  0.1610    0.92328 0.084 0.000 0.000 0.000 0.000 0.916
#> SRR1643186     6  0.1501    0.93204 0.076 0.000 0.000 0.000 0.000 0.924
#> SRR1643187     1  0.2340    0.79980 0.852 0.000 0.000 0.000 0.000 0.148
#> SRR1643188     1  0.2340    0.79980 0.852 0.000 0.000 0.000 0.000 0.148
#> SRR1643189     1  0.2340    0.79980 0.852 0.000 0.000 0.000 0.000 0.148
#> SRR1643190     1  0.2340    0.79980 0.852 0.000 0.000 0.000 0.000 0.148
#> SRR1643191     1  0.1610    0.85028 0.916 0.000 0.000 0.000 0.000 0.084
#> SRR1643192     1  0.1610    0.85028 0.916 0.000 0.000 0.000 0.000 0.084
#> SRR1643193     1  0.2178    0.81368 0.868 0.000 0.000 0.000 0.000 0.132
#> SRR1643194     1  0.2178    0.81368 0.868 0.000 0.000 0.000 0.000 0.132
#> SRR1643195     4  0.3851    0.10070 0.460 0.000 0.000 0.540 0.000 0.000
#> SRR1643196     4  0.3843    0.12718 0.452 0.000 0.000 0.548 0.000 0.000
#> SRR1643197     1  0.1610    0.85028 0.916 0.000 0.000 0.000 0.000 0.084
#> SRR1643198     1  0.1610    0.85028 0.916 0.000 0.000 0.000 0.000 0.084
#> SRR1643199     1  0.1714    0.84375 0.908 0.000 0.000 0.000 0.000 0.092
#> SRR1643200     1  0.1714    0.84375 0.908 0.000 0.000 0.000 0.000 0.092
#> SRR1643201     1  0.0937    0.87229 0.960 0.000 0.000 0.000 0.000 0.040
#> SRR1643202     1  0.0937    0.87229 0.960 0.000 0.000 0.000 0.000 0.040
#> SRR1643203     1  0.2378    0.79639 0.848 0.000 0.000 0.000 0.000 0.152
#> SRR1643204     1  0.2378    0.79639 0.848 0.000 0.000 0.000 0.000 0.152
#> SRR1643205     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643206     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643207     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643208     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643209     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643210     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643211     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643212     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643213     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643214     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643215     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643216     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643217     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643218     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643219     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643220     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643221     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643222     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643223     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643224     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643225     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643226     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643227     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643228     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643229     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643230     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643231     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643232     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643233     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643234     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643235     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643236     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643237     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643238     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643239     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643240     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643241     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643242     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643243     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643245     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643246     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643247     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643248     3  0.0000    0.99966 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643249     3  0.0363    0.98530 0.000 0.000 0.988 0.000 0.000 0.012
#> SRR1643250     1  0.3843    0.30465 0.548 0.000 0.000 0.452 0.000 0.000
#> SRR1643251     1  0.3843    0.30465 0.548 0.000 0.000 0.452 0.000 0.000
#> SRR1643252     1  0.3847    0.29292 0.544 0.000 0.000 0.456 0.000 0.000
#> SRR1643253     1  0.3838    0.31570 0.552 0.000 0.000 0.448 0.000 0.000
#> SRR1643254     1  0.3843    0.30465 0.548 0.000 0.000 0.452 0.000 0.000
#> SRR1643255     1  0.3838    0.31568 0.552 0.000 0.000 0.448 0.000 0.000
#> SRR1643256     1  0.3838    0.31570 0.552 0.000 0.000 0.448 0.000 0.000
#> SRR1643257     1  0.3843    0.30465 0.548 0.000 0.000 0.452 0.000 0.000
#> SRR1643258     1  0.3838    0.31568 0.552 0.000 0.000 0.448 0.000 0.000
#> SRR1643259     1  0.3843    0.30465 0.548 0.000 0.000 0.452 0.000 0.000
#> SRR1643260     1  0.3843    0.30465 0.548 0.000 0.000 0.452 0.000 0.000
#> SRR1643261     1  0.3833    0.32605 0.556 0.000 0.000 0.444 0.000 0.000
#> SRR1643262     4  0.0865    0.90444 0.036 0.000 0.000 0.964 0.000 0.000
#> SRR1643263     4  0.1204    0.88881 0.056 0.000 0.000 0.944 0.000 0.000
#> SRR1643264     4  0.1075    0.89662 0.048 0.000 0.000 0.952 0.000 0.000
#> SRR1643266     4  0.0865    0.90444 0.036 0.000 0.000 0.964 0.000 0.000
#> SRR1643267     4  0.0865    0.90444 0.036 0.000 0.000 0.964 0.000 0.000
#> SRR1643268     4  0.0865    0.90340 0.036 0.000 0.000 0.964 0.000 0.000
#> SRR1643269     4  0.0937    0.90188 0.040 0.000 0.000 0.960 0.000 0.000
#> SRR1643270     4  0.1204    0.89063 0.056 0.000 0.000 0.944 0.000 0.000
#> SRR1643271     4  0.0865    0.90444 0.036 0.000 0.000 0.964 0.000 0.000
#> SRR1643272     4  0.0865    0.90444 0.036 0.000 0.000 0.964 0.000 0.000
#> SRR1643273     1  0.1204    0.87956 0.944 0.000 0.000 0.056 0.000 0.000
#> SRR1643274     1  0.1327    0.87806 0.936 0.000 0.000 0.064 0.000 0.000
#> SRR1643275     1  0.1007    0.88098 0.956 0.000 0.000 0.044 0.000 0.000
#> SRR1643276     1  0.1387    0.87684 0.932 0.000 0.000 0.068 0.000 0.000
#> SRR1643277     1  0.0790    0.88144 0.968 0.000 0.000 0.032 0.000 0.000
#> SRR1643278     1  0.1387    0.87684 0.932 0.000 0.000 0.068 0.000 0.000
#> SRR1643279     1  0.1387    0.87684 0.932 0.000 0.000 0.068 0.000 0.000
#> SRR1643280     1  0.1327    0.87814 0.936 0.000 0.000 0.064 0.000 0.000
#> SRR1643281     1  0.1327    0.87806 0.936 0.000 0.000 0.064 0.000 0.000
#> SRR1643282     1  0.1267    0.87890 0.940 0.000 0.000 0.060 0.000 0.000
#> SRR1643283     1  0.1327    0.87806 0.936 0.000 0.000 0.064 0.000 0.000
#> SRR1643284     1  0.1141    0.88022 0.948 0.000 0.000 0.052 0.000 0.000
#> SRR1643285     1  0.1387    0.87684 0.932 0.000 0.000 0.068 0.000 0.000
#> SRR1643286     1  0.1141    0.88027 0.948 0.000 0.000 0.052 0.000 0.000
#> SRR1643287     4  0.2572    0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643288     4  0.2572    0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643289     4  0.2572    0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643290     4  0.2572    0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643291     4  0.2572    0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643292     4  0.2572    0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643293     4  0.2572    0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643294     4  0.2572    0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643295     4  0.2572    0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643296     4  0.2572    0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643297     4  0.2572    0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643298     4  0.2572    0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643299     4  0.2572    0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643300     4  0.2572    0.84667 0.012 0.000 0.000 0.852 0.136 0.000
#> SRR1643301     1  0.1444    0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643302     1  0.1444    0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643303     1  0.1444    0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643304     1  0.1444    0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643305     1  0.1444    0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643306     1  0.1444    0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643307     1  0.1327    0.87754 0.936 0.000 0.000 0.064 0.000 0.000
#> SRR1643308     1  0.1444    0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643309     1  0.1444    0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643310     1  0.1387    0.87684 0.932 0.000 0.000 0.068 0.000 0.000
#> SRR1643311     1  0.1444    0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643312     1  0.1444    0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643313     1  0.1444    0.87530 0.928 0.000 0.000 0.072 0.000 0.000
#> SRR1643314     1  0.0146    0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643315     1  0.0146    0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643316     1  0.0146    0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643317     1  0.0146    0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643318     1  0.0146    0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643319     1  0.0405    0.88023 0.988 0.000 0.000 0.008 0.000 0.004
#> SRR1643320     1  0.0146    0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643321     1  0.0146    0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643322     1  0.0146    0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643323     1  0.0146    0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643324     1  0.0146    0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643325     1  0.0146    0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643326     1  0.0146    0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643327     1  0.0146    0.87841 0.996 0.000 0.000 0.004 0.000 0.000
#> SRR1643328     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643329     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643330     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643331     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643332     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643333     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643334     6  0.1141    0.94974 0.052 0.000 0.000 0.000 0.000 0.948
#> SRR1643335     6  0.0458    0.97363 0.016 0.000 0.000 0.000 0.000 0.984
#> SRR1643336     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643337     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643338     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643339     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643340     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643341     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643342     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643343     1  0.0858    0.87745 0.968 0.000 0.000 0.004 0.000 0.028
#> SRR1643344     1  0.0972    0.87905 0.964 0.000 0.000 0.008 0.000 0.028
#> SRR1643345     1  0.1074    0.88032 0.960 0.000 0.000 0.012 0.000 0.028
#> SRR1643346     1  0.0713    0.87544 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643347     1  0.1074    0.88032 0.960 0.000 0.000 0.012 0.000 0.028
#> SRR1643348     1  0.0858    0.87745 0.968 0.000 0.000 0.004 0.000 0.028
#> SRR1643349     1  0.0713    0.87544 0.972 0.000 0.000 0.000 0.000 0.028
#> SRR1643350     1  0.0972    0.87915 0.964 0.000 0.000 0.008 0.000 0.028
#> SRR1643351     1  0.1074    0.88032 0.960 0.000 0.000 0.012 0.000 0.028
#> SRR1643352     1  0.1074    0.88032 0.960 0.000 0.000 0.012 0.000 0.028
#> SRR1643353     1  0.1074    0.88032 0.960 0.000 0.000 0.012 0.000 0.028
#> SRR1643354     1  0.0972    0.87905 0.964 0.000 0.000 0.008 0.000 0.028
#> SRR1643355     1  0.0858    0.87745 0.968 0.000 0.000 0.004 0.000 0.028
#> SRR1643356     1  0.1074    0.88032 0.960 0.000 0.000 0.012 0.000 0.028
#> SRR1643357     1  0.1074    0.88032 0.960 0.000 0.000 0.012 0.000 0.028
#> SRR1643358     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643359     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643360     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643361     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643362     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643363     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643364     4  0.3971   -0.00234 0.448 0.000 0.000 0.548 0.004 0.000
#> SRR1643365     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643366     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643367     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643368     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643369     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643370     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643371     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643372     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643373     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643374     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643375     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643376     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643377     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643378     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643379     4  0.0291    0.91840 0.004 0.000 0.000 0.992 0.004 0.000
#> SRR1643380     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643381     1  0.2558    0.78788 0.840 0.000 0.000 0.156 0.004 0.000
#> SRR1643382     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643383     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643384     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643385     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643386     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643387     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643388     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643389     4  0.0146    0.92011 0.000 0.000 0.000 0.996 0.004 0.000
#> SRR1643390     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643391     6  0.0458    0.97318 0.016 0.000 0.000 0.000 0.000 0.984
#> SRR1643392     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643393     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643394     6  0.0458    0.97363 0.016 0.000 0.000 0.000 0.000 0.984
#> SRR1643395     6  0.0547    0.97231 0.020 0.000 0.000 0.000 0.000 0.980
#> SRR1643396     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643397     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643398     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643399     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643400     6  0.0547    0.97184 0.020 0.000 0.000 0.000 0.000 0.980
#> SRR1643401     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643402     6  0.0547    0.97184 0.020 0.000 0.000 0.000 0.000 0.980
#> SRR1643403     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643404     6  0.0458    0.97318 0.016 0.000 0.000 0.000 0.000 0.984
#> SRR1643405     6  0.0632    0.96962 0.024 0.000 0.000 0.000 0.000 0.976
#> SRR1643406     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643407     6  0.1007    0.95533 0.044 0.000 0.000 0.000 0.000 0.956
#> SRR1643408     6  0.0937    0.95899 0.040 0.000 0.000 0.000 0.000 0.960
#> SRR1643409     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643410     6  0.0363    0.97428 0.012 0.000 0.000 0.000 0.000 0.988
#> SRR1643411     6  0.0632    0.96990 0.024 0.000 0.000 0.000 0.000 0.976
#> SRR1643412     6  0.0458    0.97359 0.016 0.000 0.000 0.000 0.000 0.984
#> SRR1643413     6  0.0547    0.97253 0.020 0.000 0.000 0.000 0.000 0.980
#> SRR1643414     6  0.0632    0.96942 0.024 0.000 0.000 0.000 0.000 0.976
#> SRR1643415     6  0.0458    0.97359 0.016 0.000 0.000 0.000 0.000 0.984
#> SRR1643416     6  0.0547    0.97190 0.020 0.000 0.000 0.000 0.000 0.980
#> SRR1643417     6  0.0458    0.97359 0.016 0.000 0.000 0.000 0.000 0.984
#> SRR1643418     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643419     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643420     5  0.1075    0.99506 0.000 0.000 0.000 0.048 0.952 0.000
#> SRR1643421     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643422     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643423     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643424     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643425     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643426     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643427     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643428     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643429     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643430     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643431     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643432     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643433     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643434     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643435     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643436     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643437     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643438     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643439     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643440     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643441     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643442     5  0.1007    0.99980 0.000 0.000 0.000 0.044 0.956 0.000
#> SRR1643443     2  0.0993    0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643444     2  0.0993    0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643445     2  0.0993    0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643446     2  0.0993    0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643447     2  0.0993    0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643448     2  0.0993    0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643449     2  0.0993    0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643450     2  0.0993    0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643451     2  0.0993    0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643452     2  0.0993    0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643453     2  0.1074    0.98028 0.000 0.960 0.000 0.000 0.028 0.012
#> SRR1643454     2  0.0993    0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643455     2  0.0993    0.98098 0.000 0.964 0.000 0.000 0.024 0.012
#> SRR1643456     2  0.0603    0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643457     2  0.0603    0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643458     2  0.0603    0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643459     2  0.0603    0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643460     2  0.0603    0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643461     2  0.0603    0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643462     2  0.0603    0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643463     2  0.0603    0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643464     2  0.0603    0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643466     2  0.0603    0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643467     2  0.0603    0.97964 0.000 0.980 0.000 0.000 0.016 0.004
#> SRR1643468     2  0.0717    0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643469     2  0.0717    0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643470     2  0.0717    0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643471     2  0.0717    0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643472     2  0.0717    0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643473     2  0.0717    0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643474     2  0.0717    0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643475     2  0.0717    0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643477     2  0.0717    0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643478     2  0.0717    0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643479     2  0.0717    0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643480     2  0.0717    0.97871 0.000 0.976 0.000 0.000 0.016 0.008
#> SRR1643481     2  0.0363    0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643482     2  0.0363    0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643483     2  0.0363    0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643484     2  0.0363    0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643485     2  0.0363    0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643486     2  0.0363    0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643487     2  0.0363    0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643488     2  0.0363    0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643489     2  0.0363    0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643490     2  0.0363    0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643491     2  0.0363    0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643492     2  0.0363    0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643493     2  0.0363    0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643494     2  0.0363    0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643495     2  0.0363    0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643496     2  0.0363    0.98096 0.000 0.988 0.000 0.000 0.012 0.000
#> SRR1643497     2  0.0260    0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643498     2  0.0260    0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643499     2  0.0260    0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643500     2  0.0260    0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643501     2  0.0260    0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643502     2  0.0260    0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643503     2  0.0260    0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643504     2  0.0260    0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643505     2  0.0713    0.98225 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643506     2  0.0260    0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643507     2  0.0260    0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643508     2  0.0260    0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643509     2  0.0260    0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643510     2  0.0260    0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643511     2  0.0260    0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643512     2  0.0260    0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643513     2  0.0260    0.98249 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643531     2  0.0858    0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643532     2  0.0858    0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643533     2  0.0858    0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643534     2  0.0858    0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643535     2  0.0858    0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643536     2  0.0858    0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643537     2  0.0858    0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643538     2  0.0858    0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643539     2  0.0858    0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643540     2  0.0858    0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643541     2  0.0858    0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643542     2  0.0858    0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643543     2  0.0858    0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643544     2  0.0858    0.98119 0.000 0.968 0.000 0.000 0.028 0.004
#> SRR1643514     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643515     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643516     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643517     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643518     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643519     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643520     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643521     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643522     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643523     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643524     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643525     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643526     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643527     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643528     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643529     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643530     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643545     2  0.0146    0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643546     2  0.0146    0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643547     2  0.0146    0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643548     2  0.0146    0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643549     2  0.0146    0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643550     2  0.0458    0.98311 0.000 0.984 0.000 0.000 0.016 0.000
#> SRR1643551     2  0.0146    0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643552     2  0.0146    0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643553     2  0.0146    0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643554     2  0.0146    0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643555     2  0.0146    0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643556     2  0.0146    0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643558     2  0.0146    0.98261 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643559     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643560     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643561     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643562     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643563     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643564     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643565     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643566     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643567     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643568     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643569     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643570     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643571     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643572     2  0.0713    0.98143 0.000 0.972 0.000 0.000 0.028 0.000

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-CV-mclust-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-CV-mclust-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-CV-mclust-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-CV-mclust-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-CV-mclust-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-CV-mclust-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-CV-mclust-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-CV-mclust-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-CV-mclust-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-CV-mclust-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-CV-mclust-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-CV-mclust-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-CV-mclust-get-signatures-3

get_signatures(res, k = 5)

plot of chunk tab-CV-mclust-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-CV-mclust-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-CV-mclust-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-CV-mclust-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-CV-mclust-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)

plot of chunk tab-CV-mclust-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-CV-mclust-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk CV-mclust-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-CV-mclust-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-CV-mclust-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-CV-mclust-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-CV-mclust-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-CV-mclust-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk CV-mclust-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


CV:NMF*

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["CV", "NMF"]
# you can also extract it by
# res = res_list["CV:NMF"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'CV' method.
#>   Subgroups are detected by 'NMF' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 3.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk CV-NMF-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk CV-NMF-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000         0.4350 0.566   0.566
#> 3 3 0.918           0.899       0.937         0.5046 0.775   0.602
#> 4 4 0.755           0.892       0.894         0.0968 0.827   0.564
#> 5 5 0.823           0.842       0.859         0.0659 1.000   1.000
#> 6 6 0.789           0.779       0.830         0.0498 0.896   0.634

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 3
#> attr(,"optional")
#> [1] 2

There is also optional best \(k\) = 2 that is worth to check.

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1    p2    p3
#> SRR1643167     3  0.1860      0.972 0.052 0.000 0.948
#> SRR1643168     3  0.1753      0.975 0.048 0.000 0.952
#> SRR1643169     3  0.2066      0.965 0.060 0.000 0.940
#> SRR1643170     3  0.1643      0.978 0.044 0.000 0.956
#> SRR1643171     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643172     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643173     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643174     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643175     3  0.6309     -0.100 0.496 0.000 0.504
#> SRR1643176     1  0.6295      0.204 0.528 0.000 0.472
#> SRR1643177     1  0.6286      0.228 0.536 0.000 0.464
#> SRR1643178     1  0.6235      0.322 0.564 0.000 0.436
#> SRR1643180     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643181     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643182     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643183     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643184     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643185     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643186     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643187     1  0.6062      0.466 0.616 0.000 0.384
#> SRR1643188     1  0.6062      0.466 0.616 0.000 0.384
#> SRR1643189     1  0.6140      0.420 0.596 0.000 0.404
#> SRR1643190     1  0.6111      0.439 0.604 0.000 0.396
#> SRR1643191     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643192     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643193     1  0.6140      0.420 0.596 0.000 0.404
#> SRR1643194     1  0.6215      0.356 0.572 0.000 0.428
#> SRR1643195     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643196     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643197     3  0.4452      0.788 0.192 0.000 0.808
#> SRR1643198     3  0.4750      0.747 0.216 0.000 0.784
#> SRR1643199     3  0.1860      0.972 0.052 0.000 0.948
#> SRR1643200     3  0.1860      0.972 0.052 0.000 0.948
#> SRR1643201     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643202     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643203     3  0.4702      0.754 0.212 0.000 0.788
#> SRR1643204     3  0.4887      0.724 0.228 0.000 0.772
#> SRR1643205     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643206     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643207     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643208     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643209     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643210     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643211     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643212     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643213     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643214     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643215     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643216     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643217     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643218     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643219     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643220     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643221     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643222     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643223     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643224     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643225     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643226     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643227     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643228     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643229     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643230     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643231     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643232     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643233     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643234     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643235     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643236     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643237     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643238     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643239     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643240     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643241     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643242     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643243     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643245     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643246     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643247     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643248     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643249     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643250     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643251     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643252     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643253     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643254     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643255     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643256     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643257     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643258     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643259     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643260     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643261     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643262     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643263     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643264     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643266     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643267     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643268     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643269     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643270     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643271     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643272     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643273     1  0.2066      0.858 0.940 0.000 0.060
#> SRR1643274     1  0.0892      0.885 0.980 0.000 0.020
#> SRR1643275     1  0.1964      0.861 0.944 0.000 0.056
#> SRR1643276     1  0.1289      0.878 0.968 0.000 0.032
#> SRR1643277     1  0.2165      0.855 0.936 0.000 0.064
#> SRR1643278     1  0.1529      0.873 0.960 0.000 0.040
#> SRR1643279     1  0.1289      0.878 0.968 0.000 0.032
#> SRR1643280     1  0.1643      0.870 0.956 0.000 0.044
#> SRR1643281     1  0.1163      0.880 0.972 0.000 0.028
#> SRR1643282     1  0.1289      0.878 0.968 0.000 0.032
#> SRR1643283     1  0.1163      0.880 0.972 0.000 0.028
#> SRR1643284     1  0.1289      0.878 0.968 0.000 0.032
#> SRR1643285     1  0.1289      0.878 0.968 0.000 0.032
#> SRR1643286     1  0.1289      0.878 0.968 0.000 0.032
#> SRR1643287     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643288     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643289     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643290     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643291     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643292     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643293     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643294     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643295     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643296     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643297     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643298     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643299     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643300     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643301     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643302     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643303     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643304     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643305     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643306     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643307     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643308     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643309     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643310     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643311     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643312     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643313     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643314     1  0.6260      0.297 0.552 0.000 0.448
#> SRR1643315     1  0.6154      0.410 0.592 0.000 0.408
#> SRR1643316     1  0.5905      0.528 0.648 0.000 0.352
#> SRR1643317     1  0.6008      0.491 0.628 0.000 0.372
#> SRR1643318     1  0.5926      0.521 0.644 0.000 0.356
#> SRR1643319     1  0.5882      0.535 0.652 0.000 0.348
#> SRR1643320     1  0.5859      0.541 0.656 0.000 0.344
#> SRR1643321     1  0.5905      0.528 0.648 0.000 0.352
#> SRR1643322     1  0.5905      0.528 0.648 0.000 0.352
#> SRR1643323     1  0.6140      0.420 0.596 0.000 0.404
#> SRR1643324     1  0.5621      0.595 0.692 0.000 0.308
#> SRR1643325     1  0.6079      0.457 0.612 0.000 0.388
#> SRR1643326     1  0.6026      0.483 0.624 0.000 0.376
#> SRR1643327     1  0.6079      0.457 0.612 0.000 0.388
#> SRR1643328     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643329     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643330     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643331     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643332     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643333     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643334     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643335     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643336     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643337     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643338     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643339     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643340     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643341     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643342     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643343     1  0.5968      0.506 0.636 0.000 0.364
#> SRR1643344     1  0.6095      0.448 0.608 0.000 0.392
#> SRR1643345     1  0.6008      0.491 0.628 0.000 0.372
#> SRR1643346     1  0.5760      0.566 0.672 0.000 0.328
#> SRR1643347     1  0.5948      0.514 0.640 0.000 0.360
#> SRR1643348     1  0.6140      0.419 0.596 0.000 0.404
#> SRR1643349     1  0.5988      0.499 0.632 0.000 0.368
#> SRR1643350     1  0.5988      0.498 0.632 0.000 0.368
#> SRR1643351     1  0.6045      0.474 0.620 0.000 0.380
#> SRR1643352     1  0.5948      0.513 0.640 0.000 0.360
#> SRR1643353     1  0.5859      0.541 0.656 0.000 0.344
#> SRR1643354     1  0.5785      0.560 0.668 0.000 0.332
#> SRR1643355     1  0.5785      0.560 0.668 0.000 0.332
#> SRR1643356     1  0.6140      0.419 0.596 0.000 0.404
#> SRR1643357     1  0.5968      0.506 0.636 0.000 0.364
#> SRR1643358     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643359     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643360     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643361     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643362     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643363     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643364     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643365     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643366     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643367     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643368     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643369     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643370     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643371     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643372     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643373     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643374     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643375     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643376     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643377     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643378     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643379     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643380     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643381     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643382     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643383     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643384     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643385     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643386     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643387     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643388     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643389     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643390     3  0.2448      0.950 0.076 0.000 0.924
#> SRR1643391     3  0.2711      0.937 0.088 0.000 0.912
#> SRR1643392     3  0.1964      0.969 0.056 0.000 0.944
#> SRR1643393     3  0.2625      0.941 0.084 0.000 0.916
#> SRR1643394     3  0.2537      0.946 0.080 0.000 0.920
#> SRR1643395     3  0.2261      0.958 0.068 0.000 0.932
#> SRR1643396     3  0.2796      0.932 0.092 0.000 0.908
#> SRR1643397     3  0.3116      0.912 0.108 0.000 0.892
#> SRR1643398     3  0.3267      0.902 0.116 0.000 0.884
#> SRR1643399     3  0.2165      0.962 0.064 0.000 0.936
#> SRR1643400     3  0.2448      0.950 0.076 0.000 0.924
#> SRR1643401     3  0.1964      0.969 0.056 0.000 0.944
#> SRR1643402     3  0.2625      0.941 0.084 0.000 0.916
#> SRR1643403     3  0.1964      0.969 0.056 0.000 0.944
#> SRR1643404     3  0.2165      0.962 0.064 0.000 0.936
#> SRR1643405     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643406     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643407     3  0.1753      0.975 0.048 0.000 0.952
#> SRR1643408     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643409     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643410     3  0.1753      0.975 0.048 0.000 0.952
#> SRR1643411     3  0.1643      0.978 0.044 0.000 0.956
#> SRR1643412     3  0.1860      0.972 0.052 0.000 0.948
#> SRR1643413     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643414     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643415     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643416     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643417     3  0.1529      0.980 0.040 0.000 0.960
#> SRR1643418     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643419     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643420     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643421     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643422     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643423     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643424     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643425     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643426     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643427     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643428     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643429     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643430     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643431     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643432     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643433     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643434     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643435     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643436     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643437     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643438     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643439     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643440     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643441     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643442     1  0.0000      0.896 1.000 0.000 0.000
#> SRR1643443     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643444     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643445     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643446     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643447     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643448     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643449     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643450     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643451     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643452     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643453     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643454     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643455     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643456     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643457     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643458     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643459     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643460     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643461     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643462     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643463     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643464     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643466     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643467     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643468     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643469     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643470     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643471     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643472     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643473     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643474     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643475     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643477     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643478     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643479     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643480     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643481     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643482     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643483     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643484     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643485     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643486     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643487     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643488     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643489     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643490     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643491     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643492     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643493     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643494     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643495     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643496     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643497     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643498     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643499     2  0.0237      0.986 0.000 0.996 0.004
#> SRR1643500     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643501     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643502     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643503     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643504     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643505     2  0.0237      0.986 0.000 0.996 0.004
#> SRR1643506     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643507     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643508     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643509     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643510     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643511     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643512     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643513     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643531     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643532     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643533     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643534     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643535     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643536     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643537     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643538     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643539     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643540     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643541     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643542     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643543     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643544     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643514     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643515     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643516     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643517     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643518     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643519     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643520     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643521     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643522     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643523     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643524     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643525     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643526     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643527     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643528     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643529     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643530     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643545     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643546     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643547     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643548     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643549     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643550     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643551     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643552     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643553     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643554     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643555     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643556     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643558     2  0.0000      0.986 0.000 1.000 0.000
#> SRR1643559     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643560     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643561     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643562     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643563     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643564     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643565     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643566     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643567     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643568     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643569     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643570     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643571     2  0.1529      0.984 0.000 0.960 0.040
#> SRR1643572     2  0.1529      0.984 0.000 0.960 0.040

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1    p2    p3    p4
#> SRR1643167     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643168     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643169     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643170     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643171     1  0.0188      0.818 0.996 0.000 0.004 0.000
#> SRR1643172     1  0.0336      0.814 0.992 0.000 0.008 0.000
#> SRR1643173     1  0.0336      0.814 0.992 0.000 0.008 0.000
#> SRR1643174     1  0.0336      0.814 0.992 0.000 0.008 0.000
#> SRR1643175     1  0.3612      0.809 0.856 0.000 0.044 0.100
#> SRR1643176     1  0.3877      0.799 0.840 0.000 0.048 0.112
#> SRR1643177     1  0.3931      0.794 0.832 0.000 0.040 0.128
#> SRR1643178     1  0.4307      0.788 0.808 0.000 0.048 0.144
#> SRR1643180     1  0.2589      0.682 0.884 0.000 0.116 0.000
#> SRR1643181     1  0.2647      0.675 0.880 0.000 0.120 0.000
#> SRR1643182     1  0.3219      0.590 0.836 0.000 0.164 0.000
#> SRR1643183     1  0.1637      0.763 0.940 0.000 0.060 0.000
#> SRR1643184     1  0.1637      0.763 0.940 0.000 0.060 0.000
#> SRR1643185     1  0.1716      0.758 0.936 0.000 0.064 0.000
#> SRR1643186     1  0.1792      0.753 0.932 0.000 0.068 0.000
#> SRR1643187     1  0.2704      0.828 0.876 0.000 0.000 0.124
#> SRR1643188     1  0.2589      0.830 0.884 0.000 0.000 0.116
#> SRR1643189     1  0.2530      0.831 0.888 0.000 0.000 0.112
#> SRR1643190     1  0.2589      0.830 0.884 0.000 0.000 0.116
#> SRR1643191     1  0.2149      0.726 0.912 0.000 0.088 0.000
#> SRR1643192     1  0.2081      0.732 0.916 0.000 0.084 0.000
#> SRR1643193     1  0.2530      0.831 0.888 0.000 0.000 0.112
#> SRR1643194     1  0.2281      0.832 0.904 0.000 0.000 0.096
#> SRR1643195     4  0.1610      0.961 0.032 0.000 0.016 0.952
#> SRR1643196     4  0.1510      0.965 0.028 0.000 0.016 0.956
#> SRR1643197     1  0.1833      0.819 0.944 0.000 0.024 0.032
#> SRR1643198     1  0.1706      0.824 0.948 0.000 0.016 0.036
#> SRR1643199     1  0.2081      0.735 0.916 0.000 0.084 0.000
#> SRR1643200     1  0.1940      0.745 0.924 0.000 0.076 0.000
#> SRR1643201     1  0.4831      0.702 0.704 0.000 0.016 0.280
#> SRR1643202     1  0.4831      0.702 0.704 0.000 0.016 0.280
#> SRR1643203     1  0.0707      0.826 0.980 0.000 0.000 0.020
#> SRR1643204     1  0.0817      0.827 0.976 0.000 0.000 0.024
#> SRR1643205     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643206     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643207     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643208     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643209     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643210     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643211     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643212     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643213     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643214     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643215     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643216     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643217     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643218     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643219     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643220     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643221     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643222     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643223     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643224     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643225     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643226     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643227     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643228     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643229     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643230     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643231     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643232     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643233     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643234     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643235     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643236     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643237     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643238     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643239     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643240     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643241     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643242     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643243     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643245     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643246     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643247     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643248     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643249     3  0.4331      1.000 0.288 0.000 0.712 0.000
#> SRR1643250     4  0.1059      0.980 0.016 0.000 0.012 0.972
#> SRR1643251     4  0.1059      0.980 0.016 0.000 0.012 0.972
#> SRR1643252     4  0.0937      0.982 0.012 0.000 0.012 0.976
#> SRR1643253     4  0.1059      0.980 0.016 0.000 0.012 0.972
#> SRR1643254     4  0.1059      0.980 0.016 0.000 0.012 0.972
#> SRR1643255     4  0.0937      0.982 0.012 0.000 0.012 0.976
#> SRR1643256     4  0.1174      0.977 0.020 0.000 0.012 0.968
#> SRR1643257     4  0.1174      0.977 0.020 0.000 0.012 0.968
#> SRR1643258     4  0.1284      0.973 0.024 0.000 0.012 0.964
#> SRR1643259     4  0.1059      0.980 0.016 0.000 0.012 0.972
#> SRR1643260     4  0.1059      0.980 0.016 0.000 0.012 0.972
#> SRR1643261     4  0.1042      0.977 0.020 0.000 0.008 0.972
#> SRR1643262     4  0.0672      0.985 0.008 0.000 0.008 0.984
#> SRR1643263     4  0.0336      0.984 0.008 0.000 0.000 0.992
#> SRR1643264     4  0.0672      0.985 0.008 0.000 0.008 0.984
#> SRR1643266     4  0.0336      0.984 0.008 0.000 0.000 0.992
#> SRR1643267     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643268     4  0.0524      0.985 0.008 0.000 0.004 0.988
#> SRR1643269     4  0.0336      0.984 0.008 0.000 0.000 0.992
#> SRR1643270     4  0.0336      0.984 0.008 0.000 0.000 0.992
#> SRR1643271     4  0.0524      0.985 0.008 0.000 0.004 0.988
#> SRR1643272     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643273     1  0.4690      0.719 0.724 0.000 0.016 0.260
#> SRR1643274     1  0.4831      0.702 0.704 0.000 0.016 0.280
#> SRR1643275     1  0.4690      0.719 0.724 0.000 0.016 0.260
#> SRR1643276     1  0.4804      0.706 0.708 0.000 0.016 0.276
#> SRR1643277     1  0.4720      0.716 0.720 0.000 0.016 0.264
#> SRR1643278     1  0.4776      0.709 0.712 0.000 0.016 0.272
#> SRR1643279     1  0.4831      0.702 0.704 0.000 0.016 0.280
#> SRR1643280     1  0.4804      0.706 0.708 0.000 0.016 0.276
#> SRR1643281     1  0.4831      0.702 0.704 0.000 0.016 0.280
#> SRR1643282     1  0.4831      0.702 0.704 0.000 0.016 0.280
#> SRR1643283     1  0.4776      0.709 0.712 0.000 0.016 0.272
#> SRR1643284     1  0.4804      0.706 0.708 0.000 0.016 0.276
#> SRR1643285     1  0.4804      0.706 0.708 0.000 0.016 0.276
#> SRR1643286     1  0.4776      0.709 0.712 0.000 0.016 0.272
#> SRR1643287     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643288     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643289     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643290     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643291     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643292     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643293     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643294     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643295     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643296     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643297     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643298     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643299     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643300     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643301     1  0.4933      0.685 0.688 0.000 0.016 0.296
#> SRR1643302     1  0.4857      0.698 0.700 0.000 0.016 0.284
#> SRR1643303     1  0.4883      0.694 0.696 0.000 0.016 0.288
#> SRR1643304     1  0.4908      0.690 0.692 0.000 0.016 0.292
#> SRR1643305     1  0.4831      0.702 0.704 0.000 0.016 0.280
#> SRR1643306     1  0.4883      0.694 0.696 0.000 0.016 0.288
#> SRR1643307     1  0.5398      0.479 0.580 0.000 0.016 0.404
#> SRR1643308     1  0.4857      0.698 0.700 0.000 0.016 0.284
#> SRR1643309     1  0.4957      0.679 0.684 0.000 0.016 0.300
#> SRR1643310     1  0.5003      0.666 0.676 0.000 0.016 0.308
#> SRR1643311     1  0.4831      0.702 0.704 0.000 0.016 0.280
#> SRR1643312     1  0.4831      0.702 0.704 0.000 0.016 0.280
#> SRR1643313     1  0.5488      0.353 0.532 0.000 0.016 0.452
#> SRR1643314     1  0.2281      0.832 0.904 0.000 0.000 0.096
#> SRR1643315     1  0.2589      0.830 0.884 0.000 0.000 0.116
#> SRR1643316     1  0.2760      0.826 0.872 0.000 0.000 0.128
#> SRR1643317     1  0.2704      0.828 0.876 0.000 0.000 0.124
#> SRR1643318     1  0.2944      0.824 0.868 0.000 0.004 0.128
#> SRR1643319     1  0.2814      0.824 0.868 0.000 0.000 0.132
#> SRR1643320     1  0.2760      0.826 0.872 0.000 0.000 0.128
#> SRR1643321     1  0.2704      0.828 0.876 0.000 0.000 0.124
#> SRR1643322     1  0.2888      0.827 0.872 0.000 0.004 0.124
#> SRR1643323     1  0.2589      0.830 0.884 0.000 0.000 0.116
#> SRR1643324     1  0.2868      0.821 0.864 0.000 0.000 0.136
#> SRR1643325     1  0.2589      0.830 0.884 0.000 0.000 0.116
#> SRR1643326     1  0.2760      0.827 0.872 0.000 0.000 0.128
#> SRR1643327     1  0.2647      0.829 0.880 0.000 0.000 0.120
#> SRR1643328     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643329     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643330     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643331     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643332     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643333     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643334     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643335     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643336     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643337     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643338     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643339     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643340     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643341     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643342     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643343     1  0.2647      0.829 0.880 0.000 0.000 0.120
#> SRR1643344     1  0.2530      0.831 0.888 0.000 0.000 0.112
#> SRR1643345     1  0.2589      0.831 0.884 0.000 0.000 0.116
#> SRR1643346     1  0.2647      0.830 0.880 0.000 0.000 0.120
#> SRR1643347     1  0.2530      0.831 0.888 0.000 0.000 0.112
#> SRR1643348     1  0.2469      0.832 0.892 0.000 0.000 0.108
#> SRR1643349     1  0.2704      0.828 0.876 0.000 0.000 0.124
#> SRR1643350     1  0.2530      0.831 0.888 0.000 0.000 0.112
#> SRR1643351     1  0.2647      0.829 0.880 0.000 0.000 0.120
#> SRR1643352     1  0.2704      0.828 0.876 0.000 0.000 0.124
#> SRR1643353     1  0.2704      0.828 0.876 0.000 0.000 0.124
#> SRR1643354     1  0.2704      0.828 0.876 0.000 0.000 0.124
#> SRR1643355     1  0.2760      0.826 0.872 0.000 0.000 0.128
#> SRR1643356     1  0.2530      0.831 0.888 0.000 0.000 0.112
#> SRR1643357     1  0.2589      0.831 0.884 0.000 0.000 0.116
#> SRR1643358     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643359     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643360     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643361     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643362     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643363     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643364     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643365     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643366     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643367     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643368     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643369     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643370     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643371     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643372     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643373     4  0.0657      0.984 0.004 0.000 0.012 0.984
#> SRR1643374     4  0.0657      0.984 0.004 0.000 0.012 0.984
#> SRR1643375     4  0.0657      0.984 0.004 0.000 0.012 0.984
#> SRR1643376     4  0.0657      0.984 0.004 0.000 0.012 0.984
#> SRR1643377     4  0.0657      0.984 0.004 0.000 0.012 0.984
#> SRR1643378     4  0.0657      0.984 0.004 0.000 0.012 0.984
#> SRR1643379     4  0.0657      0.984 0.004 0.000 0.012 0.984
#> SRR1643380     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643381     4  0.0657      0.984 0.004 0.000 0.012 0.984
#> SRR1643382     4  0.0657      0.984 0.004 0.000 0.012 0.984
#> SRR1643383     4  0.0657      0.984 0.004 0.000 0.012 0.984
#> SRR1643384     4  0.0657      0.984 0.004 0.000 0.012 0.984
#> SRR1643385     4  0.0657      0.984 0.004 0.000 0.012 0.984
#> SRR1643386     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643387     4  0.0657      0.984 0.004 0.000 0.012 0.984
#> SRR1643388     4  0.0804      0.984 0.008 0.000 0.012 0.980
#> SRR1643389     4  0.0657      0.984 0.004 0.000 0.012 0.984
#> SRR1643390     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643391     1  0.0188      0.823 0.996 0.000 0.000 0.004
#> SRR1643392     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643393     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643394     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643395     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643396     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643397     1  0.0188      0.823 0.996 0.000 0.000 0.004
#> SRR1643398     1  0.0188      0.823 0.996 0.000 0.000 0.004
#> SRR1643399     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643400     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643401     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643402     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643403     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643404     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643405     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643406     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643407     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643408     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643409     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643410     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643411     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643412     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643413     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643414     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643415     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643416     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643417     1  0.0000      0.822 1.000 0.000 0.000 0.000
#> SRR1643418     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643419     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643420     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643421     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643422     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643423     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643424     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643425     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643426     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643427     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643428     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643429     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643430     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643431     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643432     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643433     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643434     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643435     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643436     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643437     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643438     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643439     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643440     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643441     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643442     4  0.0592      0.983 0.000 0.000 0.016 0.984
#> SRR1643443     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643444     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643445     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643446     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643447     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643448     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643449     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643450     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643451     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643452     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643453     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643454     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643455     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643456     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643457     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643458     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643459     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643460     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643461     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643462     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643463     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643464     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643466     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643467     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643468     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643469     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643470     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643471     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643472     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643473     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643474     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643475     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643477     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643478     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643479     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643480     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643481     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643482     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643483     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643484     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643485     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643486     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643487     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643488     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643489     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643490     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643491     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643492     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643493     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643494     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643495     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643496     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643497     2  0.0592      0.907 0.000 0.984 0.016 0.000
#> SRR1643498     2  0.0592      0.907 0.000 0.984 0.016 0.000
#> SRR1643499     2  0.0592      0.907 0.000 0.984 0.016 0.000
#> SRR1643500     2  0.0707      0.907 0.000 0.980 0.020 0.000
#> SRR1643501     2  0.0707      0.907 0.000 0.980 0.020 0.000
#> SRR1643502     2  0.0592      0.908 0.000 0.984 0.016 0.000
#> SRR1643503     2  0.0336      0.907 0.000 0.992 0.008 0.000
#> SRR1643504     2  0.0469      0.907 0.000 0.988 0.012 0.000
#> SRR1643505     2  0.0592      0.907 0.000 0.984 0.016 0.000
#> SRR1643506     2  0.0817      0.907 0.000 0.976 0.024 0.000
#> SRR1643507     2  0.0921      0.907 0.000 0.972 0.028 0.000
#> SRR1643508     2  0.0592      0.907 0.000 0.984 0.016 0.000
#> SRR1643509     2  0.0707      0.907 0.000 0.980 0.020 0.000
#> SRR1643510     2  0.0817      0.907 0.000 0.976 0.024 0.000
#> SRR1643511     2  0.0921      0.907 0.000 0.972 0.028 0.000
#> SRR1643512     2  0.0592      0.907 0.000 0.984 0.016 0.000
#> SRR1643513     2  0.0921      0.907 0.000 0.972 0.028 0.000
#> SRR1643531     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643532     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643533     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643534     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643535     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643536     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643537     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643538     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643539     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643540     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643541     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643542     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643543     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643544     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643514     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643515     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643516     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643517     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643518     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643519     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643520     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643521     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643522     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643523     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643524     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643525     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643526     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643527     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643528     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643529     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643530     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643545     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643546     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643547     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643548     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643549     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643550     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643551     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643552     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643553     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643554     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643555     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643556     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643558     2  0.0000      0.906 0.000 1.000 0.000 0.000
#> SRR1643559     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643560     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643561     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643562     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643563     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643564     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643565     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643566     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643567     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643568     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643569     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643570     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643571     2  0.3837      0.892 0.000 0.776 0.224 0.000
#> SRR1643572     2  0.3837      0.892 0.000 0.776 0.224 0.000

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1    p2    p3    p4    p5
#> SRR1643167     1  0.1484      0.855 0.944 0.000 0.008 0.000 0.048
#> SRR1643168     1  0.1484      0.855 0.944 0.000 0.008 0.000 0.048
#> SRR1643169     1  0.1484      0.855 0.944 0.000 0.008 0.000 0.048
#> SRR1643170     1  0.1597      0.854 0.940 0.000 0.012 0.000 0.048
#> SRR1643171     1  0.1408      0.855 0.948 0.000 0.008 0.000 0.044
#> SRR1643172     1  0.1408      0.855 0.948 0.000 0.008 0.000 0.044
#> SRR1643173     1  0.1408      0.855 0.948 0.000 0.008 0.000 0.044
#> SRR1643174     1  0.1408      0.855 0.948 0.000 0.008 0.000 0.044
#> SRR1643175     1  0.4740      0.773 0.760 0.000 0.016 0.128 0.096
#> SRR1643176     1  0.4784      0.769 0.756 0.000 0.016 0.132 0.096
#> SRR1643177     1  0.4455      0.775 0.776 0.000 0.012 0.136 0.076
#> SRR1643178     1  0.4869      0.760 0.748 0.000 0.016 0.140 0.096
#> SRR1643180     1  0.3736      0.762 0.808 0.000 0.140 0.000 0.052
#> SRR1643181     1  0.3736      0.763 0.808 0.000 0.140 0.000 0.052
#> SRR1643182     1  0.3944      0.739 0.788 0.000 0.160 0.000 0.052
#> SRR1643183     1  0.3307      0.797 0.844 0.000 0.104 0.000 0.052
#> SRR1643184     1  0.3307      0.797 0.844 0.000 0.104 0.000 0.052
#> SRR1643185     1  0.3359      0.794 0.840 0.000 0.108 0.000 0.052
#> SRR1643186     1  0.3201      0.803 0.852 0.000 0.096 0.000 0.052
#> SRR1643187     1  0.1591      0.864 0.940 0.000 0.004 0.004 0.052
#> SRR1643188     1  0.1430      0.864 0.944 0.000 0.004 0.000 0.052
#> SRR1643189     1  0.1430      0.864 0.944 0.000 0.004 0.000 0.052
#> SRR1643190     1  0.1430      0.864 0.944 0.000 0.004 0.000 0.052
#> SRR1643191     1  0.2867      0.822 0.880 0.000 0.072 0.004 0.044
#> SRR1643192     1  0.2929      0.819 0.876 0.000 0.076 0.004 0.044
#> SRR1643193     1  0.1357      0.856 0.948 0.000 0.004 0.000 0.048
#> SRR1643194     1  0.1357      0.856 0.948 0.000 0.004 0.000 0.048
#> SRR1643195     4  0.4643      0.824 0.072 0.000 0.012 0.756 0.160
#> SRR1643196     4  0.4421      0.838 0.060 0.000 0.012 0.772 0.156
#> SRR1643197     1  0.2305      0.848 0.916 0.000 0.012 0.028 0.044
#> SRR1643198     1  0.2217      0.850 0.920 0.000 0.012 0.024 0.044
#> SRR1643199     1  0.3297      0.812 0.860 0.000 0.080 0.012 0.048
#> SRR1643200     1  0.3229      0.809 0.860 0.000 0.088 0.008 0.044
#> SRR1643201     1  0.3576      0.818 0.840 0.000 0.012 0.048 0.100
#> SRR1643202     1  0.3628      0.817 0.836 0.000 0.012 0.048 0.104
#> SRR1643203     1  0.1124      0.860 0.960 0.000 0.004 0.000 0.036
#> SRR1643204     1  0.1124      0.860 0.960 0.000 0.004 0.000 0.036
#> SRR1643205     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643206     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643207     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643208     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643209     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643210     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643211     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643212     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643213     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643214     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643215     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643216     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643217     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643218     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643219     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643220     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643221     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643222     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643223     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643224     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643225     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643226     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643227     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643228     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643229     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643230     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643231     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643232     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643233     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643234     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643235     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643236     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643237     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643238     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643239     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643240     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643241     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643242     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643243     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643245     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643246     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643247     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643248     3  0.0794      1.000 0.028 0.000 0.972 0.000 0.000
#> SRR1643249     3  0.0955      0.995 0.028 0.000 0.968 0.004 0.000
#> SRR1643250     4  0.1845      0.879 0.016 0.000 0.000 0.928 0.056
#> SRR1643251     4  0.1845      0.879 0.016 0.000 0.000 0.928 0.056
#> SRR1643252     4  0.1914      0.880 0.016 0.000 0.000 0.924 0.060
#> SRR1643253     4  0.1845      0.879 0.016 0.000 0.000 0.928 0.056
#> SRR1643254     4  0.1845      0.879 0.016 0.000 0.000 0.928 0.056
#> SRR1643255     4  0.1845      0.879 0.016 0.000 0.000 0.928 0.056
#> SRR1643256     4  0.2036      0.875 0.024 0.000 0.000 0.920 0.056
#> SRR1643257     4  0.2012      0.875 0.020 0.000 0.000 0.920 0.060
#> SRR1643258     4  0.2193      0.869 0.028 0.000 0.000 0.912 0.060
#> SRR1643259     4  0.1845      0.879 0.016 0.000 0.000 0.928 0.056
#> SRR1643260     4  0.1845      0.879 0.016 0.000 0.000 0.928 0.056
#> SRR1643261     4  0.2036      0.875 0.024 0.000 0.000 0.920 0.056
#> SRR1643262     4  0.0404      0.902 0.000 0.000 0.000 0.988 0.012
#> SRR1643263     4  0.0510      0.902 0.000 0.000 0.000 0.984 0.016
#> SRR1643264     4  0.0404      0.901 0.000 0.000 0.000 0.988 0.012
#> SRR1643266     4  0.0451      0.902 0.000 0.000 0.004 0.988 0.008
#> SRR1643267     4  0.0290      0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643268     4  0.0404      0.902 0.000 0.000 0.000 0.988 0.012
#> SRR1643269     4  0.0404      0.902 0.000 0.000 0.000 0.988 0.012
#> SRR1643270     4  0.0693      0.902 0.000 0.000 0.008 0.980 0.012
#> SRR1643271     4  0.0404      0.902 0.000 0.000 0.000 0.988 0.012
#> SRR1643272     4  0.0162      0.901 0.000 0.000 0.000 0.996 0.004
#> SRR1643273     1  0.4779      0.760 0.672 0.000 0.012 0.024 0.292
#> SRR1643274     1  0.4858      0.750 0.656 0.000 0.012 0.024 0.308
#> SRR1643275     1  0.4912      0.741 0.644 0.000 0.012 0.024 0.320
#> SRR1643276     1  0.5026      0.732 0.632 0.000 0.012 0.028 0.328
#> SRR1643277     1  0.4839      0.751 0.660 0.000 0.012 0.024 0.304
#> SRR1643278     1  0.4439      0.795 0.728 0.000 0.012 0.024 0.236
#> SRR1643279     1  0.4975      0.741 0.644 0.000 0.012 0.028 0.316
#> SRR1643280     1  0.4735      0.756 0.668 0.000 0.012 0.020 0.300
#> SRR1643281     1  0.5009      0.735 0.636 0.000 0.012 0.028 0.324
#> SRR1643282     1  0.4800      0.758 0.668 0.000 0.012 0.024 0.296
#> SRR1643283     1  0.4912      0.741 0.644 0.000 0.012 0.024 0.320
#> SRR1643284     1  0.4820      0.754 0.664 0.000 0.012 0.024 0.300
#> SRR1643285     1  0.4839      0.751 0.660 0.000 0.012 0.024 0.304
#> SRR1643286     1  0.4820      0.756 0.664 0.000 0.012 0.024 0.300
#> SRR1643287     4  0.4714      0.663 0.004 0.000 0.012 0.576 0.408
#> SRR1643288     4  0.4714      0.663 0.004 0.000 0.012 0.576 0.408
#> SRR1643289     4  0.4714      0.663 0.004 0.000 0.012 0.576 0.408
#> SRR1643290     4  0.4686      0.673 0.004 0.000 0.012 0.588 0.396
#> SRR1643291     4  0.4714      0.663 0.004 0.000 0.012 0.576 0.408
#> SRR1643292     4  0.4722      0.658 0.004 0.000 0.012 0.572 0.412
#> SRR1643293     4  0.4722      0.658 0.004 0.000 0.012 0.572 0.412
#> SRR1643294     4  0.4714      0.663 0.004 0.000 0.012 0.576 0.408
#> SRR1643295     4  0.4722      0.658 0.004 0.000 0.012 0.572 0.412
#> SRR1643296     4  0.4714      0.663 0.004 0.000 0.012 0.576 0.408
#> SRR1643297     4  0.4686      0.674 0.004 0.000 0.012 0.588 0.396
#> SRR1643298     4  0.4705      0.667 0.004 0.000 0.012 0.580 0.404
#> SRR1643299     4  0.4686      0.673 0.004 0.000 0.012 0.588 0.396
#> SRR1643300     4  0.4705      0.667 0.004 0.000 0.012 0.580 0.404
#> SRR1643301     1  0.3862      0.810 0.824 0.000 0.012 0.092 0.072
#> SRR1643302     1  0.3256      0.831 0.864 0.000 0.012 0.064 0.060
#> SRR1643303     1  0.3694      0.815 0.836 0.000 0.012 0.076 0.076
#> SRR1643304     1  0.4093      0.793 0.808 0.000 0.012 0.088 0.092
#> SRR1643305     1  0.2886      0.839 0.884 0.000 0.012 0.036 0.068
#> SRR1643306     1  0.3316      0.827 0.860 0.000 0.012 0.072 0.056
#> SRR1643307     1  0.6092      0.391 0.564 0.000 0.012 0.316 0.108
#> SRR1643308     1  0.2987      0.838 0.880 0.000 0.012 0.056 0.052
#> SRR1643309     1  0.4046      0.794 0.808 0.000 0.012 0.116 0.064
#> SRR1643310     1  0.4512      0.760 0.772 0.000 0.012 0.136 0.080
#> SRR1643311     1  0.3862      0.806 0.824 0.000 0.012 0.072 0.092
#> SRR1643312     1  0.3103      0.834 0.872 0.000 0.012 0.044 0.072
#> SRR1643313     1  0.6117      0.276 0.524 0.000 0.012 0.368 0.096
#> SRR1643314     1  0.0727      0.864 0.980 0.000 0.004 0.004 0.012
#> SRR1643315     1  0.1041      0.860 0.964 0.000 0.000 0.004 0.032
#> SRR1643316     1  0.1041      0.860 0.964 0.000 0.000 0.004 0.032
#> SRR1643317     1  0.0932      0.863 0.972 0.000 0.004 0.004 0.020
#> SRR1643318     1  0.0955      0.861 0.968 0.000 0.000 0.004 0.028
#> SRR1643319     1  0.0671      0.863 0.980 0.000 0.000 0.004 0.016
#> SRR1643320     1  0.0771      0.863 0.976 0.000 0.000 0.004 0.020
#> SRR1643321     1  0.0771      0.863 0.976 0.000 0.000 0.004 0.020
#> SRR1643322     1  0.0451      0.864 0.988 0.000 0.000 0.004 0.008
#> SRR1643323     1  0.0955      0.862 0.968 0.000 0.000 0.004 0.028
#> SRR1643324     1  0.1026      0.862 0.968 0.000 0.004 0.004 0.024
#> SRR1643325     1  0.0671      0.863 0.980 0.000 0.000 0.004 0.016
#> SRR1643326     1  0.0510      0.863 0.984 0.000 0.000 0.000 0.016
#> SRR1643327     1  0.0955      0.861 0.968 0.000 0.000 0.004 0.028
#> SRR1643328     1  0.0324      0.863 0.992 0.000 0.004 0.000 0.004
#> SRR1643329     1  0.0324      0.863 0.992 0.000 0.004 0.000 0.004
#> SRR1643330     1  0.0162      0.863 0.996 0.000 0.004 0.000 0.000
#> SRR1643331     1  0.0162      0.863 0.996 0.000 0.004 0.000 0.000
#> SRR1643332     1  0.0324      0.863 0.992 0.000 0.004 0.000 0.004
#> SRR1643333     1  0.0162      0.863 0.996 0.000 0.004 0.000 0.000
#> SRR1643334     1  0.0324      0.863 0.992 0.000 0.004 0.000 0.004
#> SRR1643335     1  0.0324      0.863 0.992 0.000 0.004 0.000 0.004
#> SRR1643336     1  0.0162      0.863 0.996 0.000 0.004 0.000 0.000
#> SRR1643337     1  0.0324      0.863 0.992 0.000 0.004 0.000 0.004
#> SRR1643338     1  0.0324      0.863 0.992 0.000 0.004 0.000 0.004
#> SRR1643339     1  0.0324      0.863 0.992 0.000 0.004 0.000 0.004
#> SRR1643340     1  0.0162      0.863 0.996 0.000 0.004 0.000 0.000
#> SRR1643341     1  0.0324      0.863 0.992 0.000 0.004 0.000 0.004
#> SRR1643342     1  0.0162      0.863 0.996 0.000 0.004 0.000 0.000
#> SRR1643343     1  0.4135      0.738 0.656 0.000 0.004 0.000 0.340
#> SRR1643344     1  0.4135      0.738 0.656 0.000 0.004 0.000 0.340
#> SRR1643345     1  0.4151      0.735 0.652 0.000 0.004 0.000 0.344
#> SRR1643346     1  0.4252      0.737 0.652 0.000 0.008 0.000 0.340
#> SRR1643347     1  0.4151      0.735 0.652 0.000 0.004 0.000 0.344
#> SRR1643348     1  0.4302      0.733 0.648 0.000 0.004 0.004 0.344
#> SRR1643349     1  0.4135      0.738 0.656 0.000 0.004 0.000 0.340
#> SRR1643350     1  0.4135      0.738 0.656 0.000 0.004 0.000 0.340
#> SRR1643351     1  0.4135      0.738 0.656 0.000 0.004 0.000 0.340
#> SRR1643352     1  0.4151      0.735 0.652 0.000 0.004 0.000 0.344
#> SRR1643353     1  0.4151      0.735 0.652 0.000 0.004 0.000 0.344
#> SRR1643354     1  0.4135      0.738 0.656 0.000 0.004 0.000 0.340
#> SRR1643355     1  0.4151      0.735 0.652 0.000 0.004 0.000 0.344
#> SRR1643356     1  0.4151      0.735 0.652 0.000 0.004 0.000 0.344
#> SRR1643357     1  0.4151      0.735 0.652 0.000 0.004 0.000 0.344
#> SRR1643358     4  0.0794      0.897 0.000 0.000 0.000 0.972 0.028
#> SRR1643359     4  0.0794      0.897 0.000 0.000 0.000 0.972 0.028
#> SRR1643360     4  0.0794      0.897 0.000 0.000 0.000 0.972 0.028
#> SRR1643361     4  0.0609      0.899 0.000 0.000 0.000 0.980 0.020
#> SRR1643362     4  0.0963      0.894 0.000 0.000 0.000 0.964 0.036
#> SRR1643363     4  0.0609      0.899 0.000 0.000 0.000 0.980 0.020
#> SRR1643364     4  0.0609      0.899 0.000 0.000 0.000 0.980 0.020
#> SRR1643365     4  0.0794      0.897 0.000 0.000 0.000 0.972 0.028
#> SRR1643366     4  0.0609      0.899 0.000 0.000 0.000 0.980 0.020
#> SRR1643367     4  0.0510      0.900 0.000 0.000 0.000 0.984 0.016
#> SRR1643368     4  0.0703      0.898 0.000 0.000 0.000 0.976 0.024
#> SRR1643369     4  0.0703      0.898 0.000 0.000 0.000 0.976 0.024
#> SRR1643370     4  0.0703      0.898 0.000 0.000 0.000 0.976 0.024
#> SRR1643371     4  0.0703      0.898 0.000 0.000 0.000 0.976 0.024
#> SRR1643372     4  0.0510      0.900 0.000 0.000 0.000 0.984 0.016
#> SRR1643373     4  0.0290      0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643374     4  0.0290      0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643375     4  0.0290      0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643376     4  0.0290      0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643377     4  0.0290      0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643378     4  0.0290      0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643379     4  0.0290      0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643380     4  0.0290      0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643381     4  0.0290      0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643382     4  0.0290      0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643383     4  0.0290      0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643384     4  0.0290      0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643385     4  0.0290      0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643386     4  0.0290      0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643387     4  0.0290      0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643388     4  0.0290      0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643389     4  0.0290      0.901 0.000 0.000 0.000 0.992 0.008
#> SRR1643390     1  0.1357      0.863 0.948 0.000 0.004 0.000 0.048
#> SRR1643391     1  0.1205      0.863 0.956 0.000 0.004 0.000 0.040
#> SRR1643392     1  0.1357      0.863 0.948 0.000 0.004 0.000 0.048
#> SRR1643393     1  0.1282      0.863 0.952 0.000 0.004 0.000 0.044
#> SRR1643394     1  0.1282      0.863 0.952 0.000 0.004 0.000 0.044
#> SRR1643395     1  0.1205      0.863 0.956 0.000 0.004 0.000 0.040
#> SRR1643396     1  0.1357      0.863 0.948 0.000 0.004 0.000 0.048
#> SRR1643397     1  0.1205      0.863 0.956 0.000 0.004 0.000 0.040
#> SRR1643398     1  0.1205      0.863 0.956 0.000 0.004 0.000 0.040
#> SRR1643399     1  0.1357      0.863 0.948 0.000 0.004 0.000 0.048
#> SRR1643400     1  0.1282      0.863 0.952 0.000 0.004 0.000 0.044
#> SRR1643401     1  0.1357      0.863 0.948 0.000 0.004 0.000 0.048
#> SRR1643402     1  0.1357      0.863 0.948 0.000 0.004 0.000 0.048
#> SRR1643403     1  0.1357      0.863 0.948 0.000 0.004 0.000 0.048
#> SRR1643404     1  0.1357      0.863 0.948 0.000 0.004 0.000 0.048
#> SRR1643405     1  0.3123      0.825 0.812 0.000 0.004 0.000 0.184
#> SRR1643406     1  0.3010      0.830 0.824 0.000 0.004 0.000 0.172
#> SRR1643407     1  0.3048      0.828 0.820 0.000 0.004 0.000 0.176
#> SRR1643408     1  0.3086      0.827 0.816 0.000 0.004 0.000 0.180
#> SRR1643409     1  0.3231      0.820 0.800 0.000 0.004 0.000 0.196
#> SRR1643410     1  0.3086      0.827 0.816 0.000 0.004 0.000 0.180
#> SRR1643411     1  0.3086      0.827 0.816 0.000 0.004 0.000 0.180
#> SRR1643412     1  0.3231      0.820 0.800 0.000 0.004 0.000 0.196
#> SRR1643413     1  0.2890      0.834 0.836 0.000 0.004 0.000 0.160
#> SRR1643414     1  0.3123      0.825 0.812 0.000 0.004 0.000 0.184
#> SRR1643415     1  0.3123      0.825 0.812 0.000 0.004 0.000 0.184
#> SRR1643416     1  0.2930      0.833 0.832 0.000 0.004 0.000 0.164
#> SRR1643417     1  0.3196      0.821 0.804 0.000 0.004 0.000 0.192
#> SRR1643418     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643419     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643420     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643421     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643422     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643423     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643424     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643425     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643426     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643427     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643428     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643429     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643430     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643431     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643432     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643433     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643434     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643435     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643436     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643437     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643438     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643439     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643440     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643441     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643442     4  0.2575      0.885 0.004 0.000 0.012 0.884 0.100
#> SRR1643443     2  0.4321      0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643444     2  0.4321      0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643445     2  0.4321      0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643446     2  0.4321      0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643447     2  0.4321      0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643448     2  0.4321      0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643449     2  0.4321      0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643450     2  0.4321      0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643451     2  0.4321      0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643452     2  0.4321      0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643453     2  0.4321      0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643454     2  0.4321      0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643455     2  0.4321      0.786 0.000 0.600 0.004 0.000 0.396
#> SRR1643456     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643457     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643458     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643459     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643460     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643461     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643462     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643463     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643464     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643466     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643467     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643468     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643469     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643470     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643471     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643472     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643473     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643474     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643475     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643477     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643478     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643479     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643480     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643481     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643482     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643483     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643484     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643485     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643486     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643487     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643488     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643489     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643490     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643491     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643492     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643493     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643494     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643495     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643496     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643497     2  0.0671      0.825 0.000 0.980 0.004 0.000 0.016
#> SRR1643498     2  0.0566      0.824 0.000 0.984 0.004 0.000 0.012
#> SRR1643499     2  0.0671      0.825 0.000 0.980 0.004 0.000 0.016
#> SRR1643500     2  0.0566      0.824 0.000 0.984 0.004 0.000 0.012
#> SRR1643501     2  0.0671      0.825 0.000 0.980 0.004 0.000 0.016
#> SRR1643502     2  0.0671      0.825 0.000 0.980 0.004 0.000 0.016
#> SRR1643503     2  0.0566      0.824 0.000 0.984 0.004 0.000 0.012
#> SRR1643504     2  0.0566      0.824 0.000 0.984 0.004 0.000 0.012
#> SRR1643505     2  0.0771      0.825 0.000 0.976 0.004 0.000 0.020
#> SRR1643506     2  0.0566      0.824 0.000 0.984 0.004 0.000 0.012
#> SRR1643507     2  0.0671      0.825 0.000 0.980 0.004 0.000 0.016
#> SRR1643508     2  0.0566      0.824 0.000 0.984 0.004 0.000 0.012
#> SRR1643509     2  0.0566      0.824 0.000 0.984 0.004 0.000 0.012
#> SRR1643510     2  0.0771      0.824 0.000 0.976 0.004 0.000 0.020
#> SRR1643511     2  0.0865      0.824 0.000 0.972 0.004 0.000 0.024
#> SRR1643512     2  0.0566      0.824 0.000 0.984 0.004 0.000 0.012
#> SRR1643513     2  0.0865      0.824 0.000 0.972 0.004 0.000 0.024
#> SRR1643531     2  0.4182      0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643532     2  0.4182      0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643533     2  0.4182      0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643534     2  0.4182      0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643535     2  0.4182      0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643536     2  0.4182      0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643537     2  0.4182      0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643538     2  0.4182      0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643539     2  0.4182      0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643540     2  0.4182      0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643541     2  0.4182      0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643542     2  0.4182      0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643543     2  0.4182      0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643544     2  0.4182      0.785 0.000 0.600 0.000 0.000 0.400
#> SRR1643514     2  0.4150      0.789 0.000 0.612 0.000 0.000 0.388
#> SRR1643515     2  0.4138      0.790 0.000 0.616 0.000 0.000 0.384
#> SRR1643516     2  0.4161      0.788 0.000 0.608 0.000 0.000 0.392
#> SRR1643517     2  0.4161      0.788 0.000 0.608 0.000 0.000 0.392
#> SRR1643518     2  0.4161      0.788 0.000 0.608 0.000 0.000 0.392
#> SRR1643519     2  0.4161      0.788 0.000 0.608 0.000 0.000 0.392
#> SRR1643520     2  0.4138      0.790 0.000 0.616 0.000 0.000 0.384
#> SRR1643521     2  0.4150      0.789 0.000 0.612 0.000 0.000 0.388
#> SRR1643522     2  0.4150      0.789 0.000 0.612 0.000 0.000 0.388
#> SRR1643523     2  0.4138      0.790 0.000 0.616 0.000 0.000 0.384
#> SRR1643524     2  0.4161      0.788 0.000 0.608 0.000 0.000 0.392
#> SRR1643525     2  0.4161      0.788 0.000 0.608 0.000 0.000 0.392
#> SRR1643526     2  0.4138      0.790 0.000 0.616 0.000 0.000 0.384
#> SRR1643527     2  0.4138      0.790 0.000 0.616 0.000 0.000 0.384
#> SRR1643528     2  0.4126      0.790 0.000 0.620 0.000 0.000 0.380
#> SRR1643529     2  0.4161      0.788 0.000 0.608 0.000 0.000 0.392
#> SRR1643530     2  0.4138      0.790 0.000 0.616 0.000 0.000 0.384
#> SRR1643545     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643546     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643547     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643548     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643549     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643550     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643551     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643552     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643553     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643554     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643555     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643556     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643558     2  0.0000      0.824 0.000 1.000 0.000 0.000 0.000
#> SRR1643559     2  0.4171      0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643560     2  0.4171      0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643561     2  0.4171      0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643562     2  0.4171      0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643563     2  0.4171      0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643564     2  0.4171      0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643565     2  0.4171      0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643566     2  0.4171      0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643567     2  0.4171      0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643568     2  0.4171      0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643569     2  0.4171      0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643570     2  0.4171      0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643571     2  0.4171      0.787 0.000 0.604 0.000 0.000 0.396
#> SRR1643572     2  0.4171      0.787 0.000 0.604 0.000 0.000 0.396

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2    p3    p4    p5    p6
#> SRR1643167     1  0.2854    0.73469 0.872 0.000 0.000 0.024 0.068 0.036
#> SRR1643168     1  0.2933    0.73245 0.868 0.000 0.000 0.028 0.068 0.036
#> SRR1643169     1  0.2854    0.73469 0.872 0.000 0.000 0.024 0.068 0.036
#> SRR1643170     1  0.2854    0.73469 0.872 0.000 0.000 0.024 0.068 0.036
#> SRR1643171     1  0.2919    0.73631 0.876 0.000 0.008 0.024 0.060 0.032
#> SRR1643172     1  0.2919    0.73631 0.876 0.000 0.008 0.024 0.060 0.032
#> SRR1643173     1  0.2919    0.73631 0.876 0.000 0.008 0.024 0.060 0.032
#> SRR1643174     1  0.2919    0.73631 0.876 0.000 0.008 0.024 0.060 0.032
#> SRR1643175     1  0.6117    0.26967 0.528 0.000 0.008 0.324 0.104 0.036
#> SRR1643176     1  0.6117    0.27146 0.528 0.000 0.008 0.324 0.104 0.036
#> SRR1643177     1  0.6043    0.28310 0.536 0.000 0.008 0.324 0.096 0.036
#> SRR1643178     1  0.6188    0.25571 0.520 0.000 0.008 0.324 0.112 0.036
#> SRR1643180     1  0.4570    0.66411 0.776 0.000 0.092 0.028 0.068 0.036
#> SRR1643181     1  0.4617    0.66019 0.772 0.000 0.096 0.028 0.068 0.036
#> SRR1643182     1  0.4838    0.63542 0.752 0.000 0.116 0.028 0.068 0.036
#> SRR1643183     1  0.4160    0.69776 0.808 0.000 0.056 0.028 0.068 0.040
#> SRR1643184     1  0.4219    0.69442 0.804 0.000 0.060 0.028 0.068 0.040
#> SRR1643185     1  0.4276    0.69071 0.800 0.000 0.064 0.028 0.068 0.040
#> SRR1643186     1  0.4037    0.70447 0.816 0.000 0.048 0.028 0.068 0.040
#> SRR1643187     1  0.2701    0.71664 0.864 0.000 0.000 0.004 0.104 0.028
#> SRR1643188     1  0.2793    0.71003 0.856 0.000 0.000 0.004 0.112 0.028
#> SRR1643189     1  0.2653    0.72028 0.868 0.000 0.000 0.004 0.100 0.028
#> SRR1643190     1  0.2882    0.70278 0.848 0.000 0.000 0.004 0.120 0.028
#> SRR1643191     1  0.3494    0.72451 0.848 0.000 0.028 0.028 0.064 0.032
#> SRR1643192     1  0.3494    0.72451 0.848 0.000 0.028 0.028 0.064 0.032
#> SRR1643193     1  0.3251    0.72205 0.844 0.000 0.000 0.028 0.092 0.036
#> SRR1643194     1  0.3201    0.72400 0.848 0.000 0.000 0.028 0.088 0.036
#> SRR1643195     4  0.6666    0.59418 0.124 0.000 0.000 0.528 0.216 0.132
#> SRR1643196     4  0.6560    0.61085 0.120 0.000 0.000 0.544 0.208 0.128
#> SRR1643197     1  0.3034    0.72944 0.864 0.000 0.000 0.056 0.048 0.032
#> SRR1643198     1  0.2908    0.73365 0.872 0.000 0.000 0.048 0.048 0.032
#> SRR1643199     1  0.4239    0.69341 0.804 0.000 0.060 0.036 0.064 0.036
#> SRR1643200     1  0.4239    0.69341 0.804 0.000 0.060 0.036 0.064 0.036
#> SRR1643201     1  0.4393    0.63635 0.748 0.000 0.000 0.052 0.164 0.036
#> SRR1643202     1  0.4332    0.64186 0.752 0.000 0.000 0.048 0.164 0.036
#> SRR1643203     1  0.2188    0.74941 0.912 0.000 0.000 0.020 0.036 0.032
#> SRR1643204     1  0.2100    0.75070 0.916 0.000 0.000 0.016 0.036 0.032
#> SRR1643205     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643206     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643207     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643208     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643209     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643210     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643211     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643212     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643213     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643214     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643215     3  0.0508    0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643216     3  0.0508    0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643217     3  0.0508    0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643218     3  0.0508    0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643219     3  0.0508    0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643220     3  0.0508    0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643221     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643222     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643223     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643224     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643225     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643226     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643227     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643228     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643229     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643230     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643231     3  0.0508    0.99601 0.012 0.000 0.984 0.000 0.000 0.004
#> SRR1643232     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643233     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643234     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643235     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643236     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643237     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643238     3  0.0508    0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643239     3  0.0508    0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643240     3  0.0508    0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643241     3  0.0508    0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643242     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643243     3  0.0508    0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643245     3  0.0508    0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643246     3  0.0508    0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643247     3  0.0508    0.99758 0.012 0.000 0.984 0.000 0.004 0.000
#> SRR1643248     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643249     3  0.0363    0.99880 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643250     4  0.3722    0.75203 0.068 0.000 0.000 0.816 0.084 0.032
#> SRR1643251     4  0.3929    0.75741 0.076 0.000 0.000 0.800 0.092 0.032
#> SRR1643252     4  0.4144    0.75815 0.072 0.000 0.000 0.788 0.092 0.048
#> SRR1643253     4  0.3830    0.74858 0.076 0.000 0.000 0.808 0.084 0.032
#> SRR1643254     4  0.3777    0.75185 0.072 0.000 0.000 0.812 0.084 0.032
#> SRR1643255     4  0.3779    0.76629 0.060 0.000 0.000 0.812 0.092 0.036
#> SRR1643256     4  0.4247    0.72805 0.096 0.000 0.000 0.776 0.092 0.036
#> SRR1643257     4  0.4081    0.73340 0.088 0.000 0.000 0.788 0.092 0.032
#> SRR1643258     4  0.3883    0.74475 0.080 0.000 0.000 0.804 0.084 0.032
#> SRR1643259     4  0.3981    0.74250 0.080 0.000 0.000 0.796 0.092 0.032
#> SRR1643260     4  0.3772    0.76624 0.068 0.000 0.000 0.812 0.088 0.032
#> SRR1643261     4  0.4129    0.73050 0.096 0.000 0.000 0.784 0.088 0.032
#> SRR1643262     4  0.1500    0.82933 0.000 0.000 0.000 0.936 0.052 0.012
#> SRR1643263     4  0.1511    0.83018 0.004 0.000 0.000 0.940 0.044 0.012
#> SRR1643264     4  0.1693    0.83002 0.004 0.000 0.000 0.932 0.044 0.020
#> SRR1643266     4  0.1477    0.83149 0.004 0.000 0.000 0.940 0.048 0.008
#> SRR1643267     4  0.1340    0.82936 0.004 0.000 0.000 0.948 0.040 0.008
#> SRR1643268     4  0.1536    0.82976 0.004 0.000 0.000 0.940 0.040 0.016
#> SRR1643269     4  0.1765    0.82858 0.000 0.000 0.000 0.924 0.052 0.024
#> SRR1643270     4  0.1738    0.82829 0.004 0.000 0.000 0.928 0.052 0.016
#> SRR1643271     4  0.1889    0.82856 0.004 0.000 0.000 0.920 0.056 0.020
#> SRR1643272     4  0.1340    0.82936 0.004 0.000 0.000 0.948 0.040 0.008
#> SRR1643273     1  0.4127   -0.25070 0.508 0.000 0.000 0.004 0.484 0.004
#> SRR1643274     5  0.4129    0.26244 0.496 0.000 0.000 0.004 0.496 0.004
#> SRR1643275     5  0.4122    0.32227 0.472 0.000 0.000 0.004 0.520 0.004
#> SRR1643276     5  0.4098    0.37068 0.444 0.000 0.000 0.004 0.548 0.004
#> SRR1643277     5  0.3999    0.27209 0.496 0.000 0.000 0.000 0.500 0.004
#> SRR1643278     1  0.4109    0.11157 0.596 0.000 0.000 0.004 0.392 0.008
#> SRR1643279     5  0.4095    0.29880 0.480 0.000 0.000 0.000 0.512 0.008
#> SRR1643280     5  0.3999    0.26816 0.496 0.000 0.000 0.000 0.500 0.004
#> SRR1643281     5  0.4199    0.36763 0.444 0.000 0.000 0.004 0.544 0.008
#> SRR1643282     1  0.4126   -0.25600 0.512 0.000 0.000 0.004 0.480 0.004
#> SRR1643283     5  0.4111    0.34692 0.456 0.000 0.000 0.004 0.536 0.004
#> SRR1643284     5  0.3999    0.27173 0.496 0.000 0.000 0.000 0.500 0.004
#> SRR1643285     5  0.4126    0.30904 0.480 0.000 0.000 0.004 0.512 0.004
#> SRR1643286     5  0.4128    0.28760 0.488 0.000 0.000 0.004 0.504 0.004
#> SRR1643287     5  0.4463    0.24799 0.000 0.000 0.000 0.292 0.652 0.056
#> SRR1643288     5  0.4389    0.25915 0.000 0.000 0.000 0.288 0.660 0.052
#> SRR1643289     5  0.4535    0.23557 0.000 0.000 0.000 0.296 0.644 0.060
#> SRR1643290     5  0.4569    0.21355 0.000 0.000 0.000 0.304 0.636 0.060
#> SRR1643291     5  0.4463    0.24799 0.000 0.000 0.000 0.292 0.652 0.056
#> SRR1643292     5  0.4352    0.27046 0.000 0.000 0.000 0.280 0.668 0.052
#> SRR1643293     5  0.4291    0.28199 0.000 0.000 0.000 0.268 0.680 0.052
#> SRR1643294     5  0.4389    0.25860 0.000 0.000 0.000 0.288 0.660 0.052
#> SRR1643295     5  0.4463    0.24923 0.000 0.000 0.000 0.292 0.652 0.056
#> SRR1643296     5  0.4552    0.22665 0.000 0.000 0.000 0.300 0.640 0.060
#> SRR1643297     5  0.4637    0.19548 0.000 0.000 0.000 0.308 0.628 0.064
#> SRR1643298     5  0.4671    0.20236 0.000 0.000 0.000 0.304 0.628 0.068
#> SRR1643299     5  0.4535    0.23334 0.000 0.000 0.000 0.296 0.644 0.060
#> SRR1643300     5  0.4481    0.24097 0.000 0.000 0.000 0.296 0.648 0.056
#> SRR1643301     1  0.4744    0.59894 0.728 0.000 0.000 0.124 0.116 0.032
#> SRR1643302     1  0.3673    0.67665 0.804 0.000 0.000 0.088 0.100 0.008
#> SRR1643303     1  0.4556    0.58914 0.732 0.000 0.000 0.120 0.132 0.016
#> SRR1643304     1  0.5341    0.50486 0.676 0.000 0.000 0.136 0.140 0.048
#> SRR1643305     1  0.3619    0.69823 0.816 0.000 0.000 0.060 0.104 0.020
#> SRR1643306     1  0.3987    0.66386 0.788 0.000 0.000 0.084 0.108 0.020
#> SRR1643307     1  0.6629    0.12176 0.480 0.000 0.000 0.292 0.160 0.068
#> SRR1643308     1  0.3725    0.67921 0.804 0.000 0.000 0.092 0.092 0.012
#> SRR1643309     1  0.4451    0.61963 0.748 0.000 0.000 0.136 0.092 0.024
#> SRR1643310     1  0.4974    0.53856 0.692 0.000 0.000 0.144 0.144 0.020
#> SRR1643311     1  0.5147    0.52731 0.688 0.000 0.000 0.124 0.152 0.036
#> SRR1643312     1  0.3878    0.67623 0.792 0.000 0.000 0.060 0.128 0.020
#> SRR1643313     1  0.6840    0.00952 0.424 0.000 0.000 0.336 0.160 0.080
#> SRR1643314     1  0.0725    0.75796 0.976 0.000 0.000 0.000 0.012 0.012
#> SRR1643315     1  0.1296    0.75782 0.952 0.000 0.000 0.004 0.032 0.012
#> SRR1643316     1  0.1370    0.75671 0.948 0.000 0.000 0.004 0.036 0.012
#> SRR1643317     1  0.1218    0.75943 0.956 0.000 0.000 0.004 0.028 0.012
#> SRR1643318     1  0.1138    0.75844 0.960 0.000 0.000 0.004 0.024 0.012
#> SRR1643319     1  0.0508    0.75661 0.984 0.000 0.000 0.000 0.012 0.004
#> SRR1643320     1  0.0972    0.75856 0.964 0.000 0.000 0.000 0.028 0.008
#> SRR1643321     1  0.1036    0.75931 0.964 0.000 0.000 0.004 0.024 0.008
#> SRR1643322     1  0.0717    0.75777 0.976 0.000 0.000 0.000 0.016 0.008
#> SRR1643323     1  0.0993    0.75881 0.964 0.000 0.000 0.000 0.024 0.012
#> SRR1643324     1  0.1218    0.75814 0.956 0.000 0.000 0.004 0.028 0.012
#> SRR1643325     1  0.0993    0.75839 0.964 0.000 0.000 0.000 0.024 0.012
#> SRR1643326     1  0.1116    0.75849 0.960 0.000 0.000 0.004 0.028 0.008
#> SRR1643327     1  0.1296    0.75796 0.952 0.000 0.000 0.004 0.032 0.012
#> SRR1643328     1  0.0935    0.75154 0.964 0.000 0.000 0.000 0.032 0.004
#> SRR1643329     1  0.0777    0.75360 0.972 0.000 0.000 0.000 0.024 0.004
#> SRR1643330     1  0.0858    0.75282 0.968 0.000 0.000 0.000 0.028 0.004
#> SRR1643331     1  0.0858    0.75271 0.968 0.000 0.000 0.000 0.028 0.004
#> SRR1643332     1  0.1219    0.74513 0.948 0.000 0.000 0.000 0.048 0.004
#> SRR1643333     1  0.0858    0.75271 0.968 0.000 0.000 0.000 0.028 0.004
#> SRR1643334     1  0.1152    0.74684 0.952 0.000 0.000 0.000 0.044 0.004
#> SRR1643335     1  0.1219    0.74507 0.948 0.000 0.000 0.000 0.048 0.004
#> SRR1643336     1  0.1010    0.75040 0.960 0.000 0.000 0.000 0.036 0.004
#> SRR1643337     1  0.1082    0.74871 0.956 0.000 0.000 0.000 0.040 0.004
#> SRR1643338     1  0.0935    0.75193 0.964 0.000 0.000 0.000 0.032 0.004
#> SRR1643339     1  0.1010    0.75040 0.960 0.000 0.000 0.000 0.036 0.004
#> SRR1643340     1  0.0777    0.75360 0.972 0.000 0.000 0.000 0.024 0.004
#> SRR1643341     1  0.0935    0.75154 0.964 0.000 0.000 0.000 0.032 0.004
#> SRR1643342     1  0.0935    0.75154 0.964 0.000 0.000 0.000 0.032 0.004
#> SRR1643343     5  0.4404    0.49625 0.400 0.000 0.000 0.008 0.576 0.016
#> SRR1643344     5  0.4412    0.49077 0.404 0.000 0.000 0.008 0.572 0.016
#> SRR1643345     5  0.4481    0.49772 0.400 0.000 0.000 0.008 0.572 0.020
#> SRR1643346     5  0.4561    0.50205 0.392 0.000 0.000 0.016 0.576 0.016
#> SRR1643347     5  0.4486    0.50071 0.396 0.000 0.000 0.012 0.576 0.016
#> SRR1643348     5  0.4486    0.50071 0.396 0.000 0.000 0.012 0.576 0.016
#> SRR1643349     5  0.4395    0.50047 0.396 0.000 0.000 0.008 0.580 0.016
#> SRR1643350     5  0.4561    0.50205 0.392 0.000 0.000 0.016 0.576 0.016
#> SRR1643351     5  0.4412    0.49077 0.404 0.000 0.000 0.008 0.572 0.016
#> SRR1643352     5  0.4486    0.50071 0.396 0.000 0.000 0.012 0.576 0.016
#> SRR1643353     5  0.4638    0.50202 0.392 0.000 0.000 0.016 0.572 0.020
#> SRR1643354     5  0.4561    0.50205 0.392 0.000 0.000 0.016 0.576 0.016
#> SRR1643355     5  0.4494    0.49606 0.400 0.000 0.000 0.012 0.572 0.016
#> SRR1643356     5  0.4564    0.50117 0.396 0.000 0.000 0.012 0.572 0.020
#> SRR1643357     5  0.4486    0.50071 0.396 0.000 0.000 0.012 0.576 0.016
#> SRR1643358     4  0.1464    0.82256 0.004 0.000 0.000 0.944 0.036 0.016
#> SRR1643359     4  0.1821    0.81695 0.008 0.000 0.000 0.928 0.040 0.024
#> SRR1643360     4  0.1693    0.81858 0.004 0.000 0.000 0.932 0.044 0.020
#> SRR1643361     4  0.1268    0.82557 0.004 0.000 0.000 0.952 0.036 0.008
#> SRR1643362     4  0.1820    0.81560 0.012 0.000 0.000 0.928 0.044 0.016
#> SRR1643363     4  0.1218    0.82638 0.004 0.000 0.000 0.956 0.028 0.012
#> SRR1643364     4  0.1636    0.82110 0.004 0.000 0.000 0.936 0.036 0.024
#> SRR1643365     4  0.1718    0.81786 0.008 0.000 0.000 0.932 0.044 0.016
#> SRR1643366     4  0.1194    0.82635 0.004 0.000 0.000 0.956 0.032 0.008
#> SRR1643367     4  0.1053    0.82785 0.004 0.000 0.000 0.964 0.020 0.012
#> SRR1643368     4  0.1750    0.81789 0.012 0.000 0.000 0.932 0.040 0.016
#> SRR1643369     4  0.1737    0.81821 0.008 0.000 0.000 0.932 0.040 0.020
#> SRR1643370     4  0.1708    0.81878 0.004 0.000 0.000 0.932 0.040 0.024
#> SRR1643371     4  0.1624    0.82010 0.004 0.000 0.000 0.936 0.040 0.020
#> SRR1643372     4  0.1313    0.82541 0.004 0.000 0.000 0.952 0.028 0.016
#> SRR1643373     4  0.1074    0.82831 0.000 0.000 0.000 0.960 0.028 0.012
#> SRR1643374     4  0.1151    0.82737 0.000 0.000 0.000 0.956 0.032 0.012
#> SRR1643375     4  0.1151    0.82737 0.000 0.000 0.000 0.956 0.032 0.012
#> SRR1643376     4  0.1151    0.82737 0.000 0.000 0.000 0.956 0.032 0.012
#> SRR1643377     4  0.1151    0.82737 0.000 0.000 0.000 0.956 0.032 0.012
#> SRR1643378     4  0.0972    0.82848 0.000 0.000 0.000 0.964 0.028 0.008
#> SRR1643379     4  0.1074    0.82831 0.000 0.000 0.000 0.960 0.028 0.012
#> SRR1643380     4  0.1074    0.82814 0.000 0.000 0.000 0.960 0.028 0.012
#> SRR1643381     4  0.1225    0.82664 0.000 0.000 0.000 0.952 0.036 0.012
#> SRR1643382     4  0.1074    0.82831 0.000 0.000 0.000 0.960 0.028 0.012
#> SRR1643383     4  0.1151    0.82737 0.000 0.000 0.000 0.956 0.032 0.012
#> SRR1643384     4  0.0993    0.82858 0.000 0.000 0.000 0.964 0.024 0.012
#> SRR1643385     4  0.1074    0.82831 0.000 0.000 0.000 0.960 0.028 0.012
#> SRR1643386     4  0.1088    0.82898 0.000 0.000 0.000 0.960 0.024 0.016
#> SRR1643387     4  0.0993    0.82864 0.000 0.000 0.000 0.964 0.024 0.012
#> SRR1643388     4  0.1151    0.82737 0.000 0.000 0.000 0.956 0.032 0.012
#> SRR1643389     4  0.1074    0.82792 0.000 0.000 0.000 0.960 0.028 0.012
#> SRR1643390     1  0.2070    0.71288 0.892 0.000 0.000 0.000 0.100 0.008
#> SRR1643391     1  0.1918    0.72084 0.904 0.000 0.000 0.000 0.088 0.008
#> SRR1643392     1  0.2070    0.71288 0.892 0.000 0.000 0.000 0.100 0.008
#> SRR1643393     1  0.2020    0.71467 0.896 0.000 0.000 0.000 0.096 0.008
#> SRR1643394     1  0.2070    0.71288 0.892 0.000 0.000 0.000 0.100 0.008
#> SRR1643395     1  0.1970    0.71773 0.900 0.000 0.000 0.000 0.092 0.008
#> SRR1643396     1  0.2070    0.71288 0.892 0.000 0.000 0.000 0.100 0.008
#> SRR1643397     1  0.1970    0.71773 0.900 0.000 0.000 0.000 0.092 0.008
#> SRR1643398     1  0.2020    0.71467 0.896 0.000 0.000 0.000 0.096 0.008
#> SRR1643399     1  0.2020    0.71467 0.896 0.000 0.000 0.000 0.096 0.008
#> SRR1643400     1  0.1970    0.71773 0.900 0.000 0.000 0.000 0.092 0.008
#> SRR1643401     1  0.2070    0.71288 0.892 0.000 0.000 0.000 0.100 0.008
#> SRR1643402     1  0.2118    0.70957 0.888 0.000 0.000 0.000 0.104 0.008
#> SRR1643403     1  0.2020    0.71467 0.896 0.000 0.000 0.000 0.096 0.008
#> SRR1643404     1  0.2020    0.71467 0.896 0.000 0.000 0.000 0.096 0.008
#> SRR1643405     1  0.3490    0.45723 0.724 0.000 0.000 0.000 0.268 0.008
#> SRR1643406     1  0.3421    0.48450 0.736 0.000 0.000 0.000 0.256 0.008
#> SRR1643407     1  0.3490    0.45691 0.724 0.000 0.000 0.000 0.268 0.008
#> SRR1643408     1  0.3445    0.47538 0.732 0.000 0.000 0.000 0.260 0.008
#> SRR1643409     1  0.3512    0.44730 0.720 0.000 0.000 0.000 0.272 0.008
#> SRR1643410     1  0.3534    0.43685 0.716 0.000 0.000 0.000 0.276 0.008
#> SRR1643411     1  0.3468    0.46673 0.728 0.000 0.000 0.000 0.264 0.008
#> SRR1643412     1  0.3575    0.41609 0.708 0.000 0.000 0.000 0.284 0.008
#> SRR1643413     1  0.3323    0.51683 0.752 0.000 0.000 0.000 0.240 0.008
#> SRR1643414     1  0.3490    0.45745 0.724 0.000 0.000 0.000 0.268 0.008
#> SRR1643415     1  0.3534    0.43685 0.716 0.000 0.000 0.000 0.276 0.008
#> SRR1643416     1  0.3373    0.50077 0.744 0.000 0.000 0.000 0.248 0.008
#> SRR1643417     1  0.3490    0.45684 0.724 0.000 0.000 0.000 0.268 0.008
#> SRR1643418     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643419     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643420     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643421     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643422     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643423     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643424     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643425     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643426     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643427     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643428     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643429     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643430     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643431     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643432     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643433     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643434     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643435     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643436     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643437     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643438     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643439     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643440     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643441     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643442     4  0.4634    0.73257 0.000 0.000 0.000 0.692 0.164 0.144
#> SRR1643443     6  0.4390    0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643444     6  0.4390    0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643445     6  0.4390    0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643446     6  0.4390    0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643447     6  0.4390    0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643448     6  0.4390    0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643449     6  0.4390    0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643450     6  0.4390    0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643451     6  0.4390    0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643452     6  0.4390    0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643453     6  0.4390    0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643454     6  0.4390    0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643455     6  0.4390    0.96397 0.000 0.284 0.004 0.000 0.044 0.668
#> SRR1643456     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643457     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643458     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643459     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643460     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643461     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643462     2  0.0146    0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643463     2  0.0146    0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643464     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643466     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643467     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643468     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643469     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643470     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643471     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643472     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643473     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643474     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643475     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643477     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643478     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643479     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643480     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643481     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643482     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643483     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643484     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643485     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643486     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643487     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643488     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643489     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643490     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643491     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643492     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643493     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643494     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643495     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643496     2  0.0000    0.96946 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643497     2  0.2563    0.88516 0.000 0.884 0.008 0.000 0.068 0.040
#> SRR1643498     2  0.2265    0.90318 0.000 0.900 0.008 0.000 0.068 0.024
#> SRR1643499     2  0.2420    0.89527 0.000 0.892 0.008 0.000 0.068 0.032
#> SRR1643500     2  0.2094    0.91043 0.000 0.908 0.008 0.000 0.068 0.016
#> SRR1643501     2  0.2420    0.89476 0.000 0.892 0.008 0.000 0.068 0.032
#> SRR1643502     2  0.2182    0.90755 0.000 0.904 0.008 0.000 0.068 0.020
#> SRR1643503     2  0.2182    0.90760 0.000 0.904 0.008 0.000 0.068 0.020
#> SRR1643504     2  0.2094    0.91043 0.000 0.908 0.008 0.000 0.068 0.016
#> SRR1643505     2  0.2697    0.87460 0.000 0.876 0.008 0.000 0.068 0.048
#> SRR1643506     2  0.2265    0.90350 0.000 0.900 0.008 0.000 0.068 0.024
#> SRR1643507     2  0.2631    0.87962 0.000 0.880 0.008 0.000 0.068 0.044
#> SRR1643508     2  0.2182    0.90717 0.000 0.904 0.008 0.000 0.068 0.020
#> SRR1643509     2  0.2182    0.90708 0.000 0.904 0.008 0.000 0.068 0.020
#> SRR1643510     2  0.2420    0.89462 0.000 0.892 0.008 0.000 0.068 0.032
#> SRR1643511     2  0.2631    0.87964 0.000 0.880 0.008 0.000 0.068 0.044
#> SRR1643512     2  0.1900    0.91659 0.000 0.916 0.008 0.000 0.068 0.008
#> SRR1643513     2  0.2563    0.88505 0.000 0.884 0.008 0.000 0.068 0.040
#> SRR1643531     6  0.3758    0.97884 0.000 0.284 0.000 0.000 0.016 0.700
#> SRR1643532     6  0.3895    0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643533     6  0.3895    0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643534     6  0.3895    0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643535     6  0.3895    0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643536     6  0.3895    0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643537     6  0.3895    0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643538     6  0.3895    0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643539     6  0.3895    0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643540     6  0.3895    0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643541     6  0.3895    0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643542     6  0.3895    0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643543     6  0.3895    0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643544     6  0.3895    0.97832 0.000 0.284 0.004 0.000 0.016 0.696
#> SRR1643514     6  0.3371    0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643515     6  0.3371    0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643516     6  0.3351    0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643517     6  0.3371    0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643518     6  0.3351    0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643519     6  0.3390    0.97635 0.000 0.296 0.000 0.000 0.000 0.704
#> SRR1643520     6  0.3371    0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643521     6  0.3371    0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643522     6  0.3371    0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643523     6  0.3351    0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643524     6  0.3371    0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643525     6  0.3371    0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643526     6  0.3371    0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643527     6  0.3371    0.97944 0.000 0.292 0.000 0.000 0.000 0.708
#> SRR1643528     6  0.3390    0.97635 0.000 0.296 0.000 0.000 0.000 0.704
#> SRR1643529     6  0.3351    0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643530     6  0.3351    0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643545     2  0.0146    0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643546     2  0.0146    0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643547     2  0.0146    0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643548     2  0.0146    0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643549     2  0.0146    0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643550     2  0.0146    0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643551     2  0.0260    0.96565 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643552     2  0.0146    0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643553     2  0.0146    0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643554     2  0.0146    0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643555     2  0.0146    0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643556     2  0.0146    0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643558     2  0.0146    0.96788 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643559     6  0.3351    0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643560     6  0.3351    0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643561     6  0.3351    0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643562     6  0.3351    0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643563     6  0.3351    0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643564     6  0.3351    0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643565     6  0.3351    0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643566     6  0.3351    0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643567     6  0.3351    0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643568     6  0.3351    0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643569     6  0.3351    0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643570     6  0.3351    0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643571     6  0.3351    0.98083 0.000 0.288 0.000 0.000 0.000 0.712
#> SRR1643572     6  0.3351    0.98083 0.000 0.288 0.000 0.000 0.000 0.712

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-CV-NMF-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-CV-NMF-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-CV-NMF-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-CV-NMF-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-CV-NMF-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-CV-NMF-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-CV-NMF-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-CV-NMF-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-CV-NMF-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-CV-NMF-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-CV-NMF-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-CV-NMF-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-CV-NMF-get-signatures-3

get_signatures(res, k = 5)

plot of chunk tab-CV-NMF-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-CV-NMF-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-CV-NMF-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-CV-NMF-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-CV-NMF-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)

plot of chunk tab-CV-NMF-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-CV-NMF-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk CV-NMF-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-CV-NMF-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-CV-NMF-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-CV-NMF-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-CV-NMF-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-CV-NMF-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk CV-NMF-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


MAD:hclust**

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["MAD", "hclust"]
# you can also extract it by
# res = res_list["MAD:hclust"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'MAD' method.
#>   Subgroups are detected by 'hclust' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 3.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk MAD-hclust-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk MAD-hclust-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000         0.4350 0.566   0.566
#> 3 3 1.000           1.000       1.000         0.2899 0.874   0.777
#> 4 4 0.835           0.946       0.946         0.0572 0.998   0.996
#> 5 5 0.757           0.824       0.863         0.0942 1.000   1.000
#> 6 6 0.749           0.899       0.836         0.1297 0.785   0.509

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 3
#> attr(,"optional")
#> [1] 2

There is also optional best \(k\) = 2 that is worth to check.

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette p1 p2 p3
#> SRR1643167     1       0          1  1  0  0
#> SRR1643168     1       0          1  1  0  0
#> SRR1643169     1       0          1  1  0  0
#> SRR1643170     1       0          1  1  0  0
#> SRR1643171     1       0          1  1  0  0
#> SRR1643172     1       0          1  1  0  0
#> SRR1643173     1       0          1  1  0  0
#> SRR1643174     1       0          1  1  0  0
#> SRR1643175     1       0          1  1  0  0
#> SRR1643176     1       0          1  1  0  0
#> SRR1643177     1       0          1  1  0  0
#> SRR1643178     1       0          1  1  0  0
#> SRR1643180     1       0          1  1  0  0
#> SRR1643181     1       0          1  1  0  0
#> SRR1643182     1       0          1  1  0  0
#> SRR1643183     1       0          1  1  0  0
#> SRR1643184     1       0          1  1  0  0
#> SRR1643185     1       0          1  1  0  0
#> SRR1643186     1       0          1  1  0  0
#> SRR1643187     1       0          1  1  0  0
#> SRR1643188     1       0          1  1  0  0
#> SRR1643189     1       0          1  1  0  0
#> SRR1643190     1       0          1  1  0  0
#> SRR1643191     1       0          1  1  0  0
#> SRR1643192     1       0          1  1  0  0
#> SRR1643193     1       0          1  1  0  0
#> SRR1643194     1       0          1  1  0  0
#> SRR1643195     1       0          1  1  0  0
#> SRR1643196     1       0          1  1  0  0
#> SRR1643197     1       0          1  1  0  0
#> SRR1643198     1       0          1  1  0  0
#> SRR1643199     1       0          1  1  0  0
#> SRR1643200     1       0          1  1  0  0
#> SRR1643201     1       0          1  1  0  0
#> SRR1643202     1       0          1  1  0  0
#> SRR1643203     1       0          1  1  0  0
#> SRR1643204     1       0          1  1  0  0
#> SRR1643205     3       0          1  0  0  1
#> SRR1643206     3       0          1  0  0  1
#> SRR1643207     3       0          1  0  0  1
#> SRR1643208     3       0          1  0  0  1
#> SRR1643209     3       0          1  0  0  1
#> SRR1643210     3       0          1  0  0  1
#> SRR1643211     3       0          1  0  0  1
#> SRR1643212     3       0          1  0  0  1
#> SRR1643213     3       0          1  0  0  1
#> SRR1643214     3       0          1  0  0  1
#> SRR1643215     3       0          1  0  0  1
#> SRR1643216     3       0          1  0  0  1
#> SRR1643217     3       0          1  0  0  1
#> SRR1643218     3       0          1  0  0  1
#> SRR1643219     3       0          1  0  0  1
#> SRR1643220     3       0          1  0  0  1
#> SRR1643221     3       0          1  0  0  1
#> SRR1643222     3       0          1  0  0  1
#> SRR1643223     3       0          1  0  0  1
#> SRR1643224     3       0          1  0  0  1
#> SRR1643225     3       0          1  0  0  1
#> SRR1643226     3       0          1  0  0  1
#> SRR1643227     3       0          1  0  0  1
#> SRR1643228     3       0          1  0  0  1
#> SRR1643229     3       0          1  0  0  1
#> SRR1643230     3       0          1  0  0  1
#> SRR1643231     3       0          1  0  0  1
#> SRR1643232     3       0          1  0  0  1
#> SRR1643233     3       0          1  0  0  1
#> SRR1643234     3       0          1  0  0  1
#> SRR1643235     3       0          1  0  0  1
#> SRR1643236     3       0          1  0  0  1
#> SRR1643237     3       0          1  0  0  1
#> SRR1643238     3       0          1  0  0  1
#> SRR1643239     3       0          1  0  0  1
#> SRR1643240     3       0          1  0  0  1
#> SRR1643241     3       0          1  0  0  1
#> SRR1643242     3       0          1  0  0  1
#> SRR1643243     3       0          1  0  0  1
#> SRR1643245     3       0          1  0  0  1
#> SRR1643246     3       0          1  0  0  1
#> SRR1643247     3       0          1  0  0  1
#> SRR1643248     3       0          1  0  0  1
#> SRR1643249     3       0          1  0  0  1
#> SRR1643250     1       0          1  1  0  0
#> SRR1643251     1       0          1  1  0  0
#> SRR1643252     1       0          1  1  0  0
#> SRR1643253     1       0          1  1  0  0
#> SRR1643254     1       0          1  1  0  0
#> SRR1643255     1       0          1  1  0  0
#> SRR1643256     1       0          1  1  0  0
#> SRR1643257     1       0          1  1  0  0
#> SRR1643258     1       0          1  1  0  0
#> SRR1643259     1       0          1  1  0  0
#> SRR1643260     1       0          1  1  0  0
#> SRR1643261     1       0          1  1  0  0
#> SRR1643262     1       0          1  1  0  0
#> SRR1643263     1       0          1  1  0  0
#> SRR1643264     1       0          1  1  0  0
#> SRR1643266     1       0          1  1  0  0
#> SRR1643267     1       0          1  1  0  0
#> SRR1643268     1       0          1  1  0  0
#> SRR1643269     1       0          1  1  0  0
#> SRR1643270     1       0          1  1  0  0
#> SRR1643271     1       0          1  1  0  0
#> SRR1643272     1       0          1  1  0  0
#> SRR1643273     1       0          1  1  0  0
#> SRR1643274     1       0          1  1  0  0
#> SRR1643275     1       0          1  1  0  0
#> SRR1643276     1       0          1  1  0  0
#> SRR1643277     1       0          1  1  0  0
#> SRR1643278     1       0          1  1  0  0
#> SRR1643279     1       0          1  1  0  0
#> SRR1643280     1       0          1  1  0  0
#> SRR1643281     1       0          1  1  0  0
#> SRR1643282     1       0          1  1  0  0
#> SRR1643283     1       0          1  1  0  0
#> SRR1643284     1       0          1  1  0  0
#> SRR1643285     1       0          1  1  0  0
#> SRR1643286     1       0          1  1  0  0
#> SRR1643287     1       0          1  1  0  0
#> SRR1643288     1       0          1  1  0  0
#> SRR1643289     1       0          1  1  0  0
#> SRR1643290     1       0          1  1  0  0
#> SRR1643291     1       0          1  1  0  0
#> SRR1643292     1       0          1  1  0  0
#> SRR1643293     1       0          1  1  0  0
#> SRR1643294     1       0          1  1  0  0
#> SRR1643295     1       0          1  1  0  0
#> SRR1643296     1       0          1  1  0  0
#> SRR1643297     1       0          1  1  0  0
#> SRR1643298     1       0          1  1  0  0
#> SRR1643299     1       0          1  1  0  0
#> SRR1643300     1       0          1  1  0  0
#> SRR1643301     1       0          1  1  0  0
#> SRR1643302     1       0          1  1  0  0
#> SRR1643303     1       0          1  1  0  0
#> SRR1643304     1       0          1  1  0  0
#> SRR1643305     1       0          1  1  0  0
#> SRR1643306     1       0          1  1  0  0
#> SRR1643307     1       0          1  1  0  0
#> SRR1643308     1       0          1  1  0  0
#> SRR1643309     1       0          1  1  0  0
#> SRR1643310     1       0          1  1  0  0
#> SRR1643311     1       0          1  1  0  0
#> SRR1643312     1       0          1  1  0  0
#> SRR1643313     1       0          1  1  0  0
#> SRR1643314     1       0          1  1  0  0
#> SRR1643315     1       0          1  1  0  0
#> SRR1643316     1       0          1  1  0  0
#> SRR1643317     1       0          1  1  0  0
#> SRR1643318     1       0          1  1  0  0
#> SRR1643319     1       0          1  1  0  0
#> SRR1643320     1       0          1  1  0  0
#> SRR1643321     1       0          1  1  0  0
#> SRR1643322     1       0          1  1  0  0
#> SRR1643323     1       0          1  1  0  0
#> SRR1643324     1       0          1  1  0  0
#> SRR1643325     1       0          1  1  0  0
#> SRR1643326     1       0          1  1  0  0
#> SRR1643327     1       0          1  1  0  0
#> SRR1643328     1       0          1  1  0  0
#> SRR1643329     1       0          1  1  0  0
#> SRR1643330     1       0          1  1  0  0
#> SRR1643331     1       0          1  1  0  0
#> SRR1643332     1       0          1  1  0  0
#> SRR1643333     1       0          1  1  0  0
#> SRR1643334     1       0          1  1  0  0
#> SRR1643335     1       0          1  1  0  0
#> SRR1643336     1       0          1  1  0  0
#> SRR1643337     1       0          1  1  0  0
#> SRR1643338     1       0          1  1  0  0
#> SRR1643339     1       0          1  1  0  0
#> SRR1643340     1       0          1  1  0  0
#> SRR1643341     1       0          1  1  0  0
#> SRR1643342     1       0          1  1  0  0
#> SRR1643343     1       0          1  1  0  0
#> SRR1643344     1       0          1  1  0  0
#> SRR1643345     1       0          1  1  0  0
#> SRR1643346     1       0          1  1  0  0
#> SRR1643347     1       0          1  1  0  0
#> SRR1643348     1       0          1  1  0  0
#> SRR1643349     1       0          1  1  0  0
#> SRR1643350     1       0          1  1  0  0
#> SRR1643351     1       0          1  1  0  0
#> SRR1643352     1       0          1  1  0  0
#> SRR1643353     1       0          1  1  0  0
#> SRR1643354     1       0          1  1  0  0
#> SRR1643355     1       0          1  1  0  0
#> SRR1643356     1       0          1  1  0  0
#> SRR1643357     1       0          1  1  0  0
#> SRR1643358     1       0          1  1  0  0
#> SRR1643359     1       0          1  1  0  0
#> SRR1643360     1       0          1  1  0  0
#> SRR1643361     1       0          1  1  0  0
#> SRR1643362     1       0          1  1  0  0
#> SRR1643363     1       0          1  1  0  0
#> SRR1643364     1       0          1  1  0  0
#> SRR1643365     1       0          1  1  0  0
#> SRR1643366     1       0          1  1  0  0
#> SRR1643367     1       0          1  1  0  0
#> SRR1643368     1       0          1  1  0  0
#> SRR1643369     1       0          1  1  0  0
#> SRR1643370     1       0          1  1  0  0
#> SRR1643371     1       0          1  1  0  0
#> SRR1643372     1       0          1  1  0  0
#> SRR1643373     1       0          1  1  0  0
#> SRR1643374     1       0          1  1  0  0
#> SRR1643375     1       0          1  1  0  0
#> SRR1643376     1       0          1  1  0  0
#> SRR1643377     1       0          1  1  0  0
#> SRR1643378     1       0          1  1  0  0
#> SRR1643379     1       0          1  1  0  0
#> SRR1643380     1       0          1  1  0  0
#> SRR1643381     1       0          1  1  0  0
#> SRR1643382     1       0          1  1  0  0
#> SRR1643383     1       0          1  1  0  0
#> SRR1643384     1       0          1  1  0  0
#> SRR1643385     1       0          1  1  0  0
#> SRR1643386     1       0          1  1  0  0
#> SRR1643387     1       0          1  1  0  0
#> SRR1643388     1       0          1  1  0  0
#> SRR1643389     1       0          1  1  0  0
#> SRR1643390     1       0          1  1  0  0
#> SRR1643391     1       0          1  1  0  0
#> SRR1643392     1       0          1  1  0  0
#> SRR1643393     1       0          1  1  0  0
#> SRR1643394     1       0          1  1  0  0
#> SRR1643395     1       0          1  1  0  0
#> SRR1643396     1       0          1  1  0  0
#> SRR1643397     1       0          1  1  0  0
#> SRR1643398     1       0          1  1  0  0
#> SRR1643399     1       0          1  1  0  0
#> SRR1643400     1       0          1  1  0  0
#> SRR1643401     1       0          1  1  0  0
#> SRR1643402     1       0          1  1  0  0
#> SRR1643403     1       0          1  1  0  0
#> SRR1643404     1       0          1  1  0  0
#> SRR1643405     1       0          1  1  0  0
#> SRR1643406     1       0          1  1  0  0
#> SRR1643407     1       0          1  1  0  0
#> SRR1643408     1       0          1  1  0  0
#> SRR1643409     1       0          1  1  0  0
#> SRR1643410     1       0          1  1  0  0
#> SRR1643411     1       0          1  1  0  0
#> SRR1643412     1       0          1  1  0  0
#> SRR1643413     1       0          1  1  0  0
#> SRR1643414     1       0          1  1  0  0
#> SRR1643415     1       0          1  1  0  0
#> SRR1643416     1       0          1  1  0  0
#> SRR1643417     1       0          1  1  0  0
#> SRR1643418     1       0          1  1  0  0
#> SRR1643419     1       0          1  1  0  0
#> SRR1643420     1       0          1  1  0  0
#> SRR1643421     1       0          1  1  0  0
#> SRR1643422     1       0          1  1  0  0
#> SRR1643423     1       0          1  1  0  0
#> SRR1643424     1       0          1  1  0  0
#> SRR1643425     1       0          1  1  0  0
#> SRR1643426     1       0          1  1  0  0
#> SRR1643427     1       0          1  1  0  0
#> SRR1643428     1       0          1  1  0  0
#> SRR1643429     1       0          1  1  0  0
#> SRR1643430     1       0          1  1  0  0
#> SRR1643431     1       0          1  1  0  0
#> SRR1643432     1       0          1  1  0  0
#> SRR1643433     1       0          1  1  0  0
#> SRR1643434     1       0          1  1  0  0
#> SRR1643435     1       0          1  1  0  0
#> SRR1643436     1       0          1  1  0  0
#> SRR1643437     1       0          1  1  0  0
#> SRR1643438     1       0          1  1  0  0
#> SRR1643439     1       0          1  1  0  0
#> SRR1643440     1       0          1  1  0  0
#> SRR1643441     1       0          1  1  0  0
#> SRR1643442     1       0          1  1  0  0
#> SRR1643443     2       0          1  0  1  0
#> SRR1643444     2       0          1  0  1  0
#> SRR1643445     2       0          1  0  1  0
#> SRR1643446     2       0          1  0  1  0
#> SRR1643447     2       0          1  0  1  0
#> SRR1643448     2       0          1  0  1  0
#> SRR1643449     2       0          1  0  1  0
#> SRR1643450     2       0          1  0  1  0
#> SRR1643451     2       0          1  0  1  0
#> SRR1643452     2       0          1  0  1  0
#> SRR1643453     2       0          1  0  1  0
#> SRR1643454     2       0          1  0  1  0
#> SRR1643455     2       0          1  0  1  0
#> SRR1643456     2       0          1  0  1  0
#> SRR1643457     2       0          1  0  1  0
#> SRR1643458     2       0          1  0  1  0
#> SRR1643459     2       0          1  0  1  0
#> SRR1643460     2       0          1  0  1  0
#> SRR1643461     2       0          1  0  1  0
#> SRR1643462     2       0          1  0  1  0
#> SRR1643463     2       0          1  0  1  0
#> SRR1643464     2       0          1  0  1  0
#> SRR1643466     2       0          1  0  1  0
#> SRR1643467     2       0          1  0  1  0
#> SRR1643468     2       0          1  0  1  0
#> SRR1643469     2       0          1  0  1  0
#> SRR1643470     2       0          1  0  1  0
#> SRR1643471     2       0          1  0  1  0
#> SRR1643472     2       0          1  0  1  0
#> SRR1643473     2       0          1  0  1  0
#> SRR1643474     2       0          1  0  1  0
#> SRR1643475     2       0          1  0  1  0
#> SRR1643477     2       0          1  0  1  0
#> SRR1643478     2       0          1  0  1  0
#> SRR1643479     2       0          1  0  1  0
#> SRR1643480     2       0          1  0  1  0
#> SRR1643481     2       0          1  0  1  0
#> SRR1643482     2       0          1  0  1  0
#> SRR1643483     2       0          1  0  1  0
#> SRR1643484     2       0          1  0  1  0
#> SRR1643485     2       0          1  0  1  0
#> SRR1643486     2       0          1  0  1  0
#> SRR1643487     2       0          1  0  1  0
#> SRR1643488     2       0          1  0  1  0
#> SRR1643489     2       0          1  0  1  0
#> SRR1643490     2       0          1  0  1  0
#> SRR1643491     2       0          1  0  1  0
#> SRR1643492     2       0          1  0  1  0
#> SRR1643493     2       0          1  0  1  0
#> SRR1643494     2       0          1  0  1  0
#> SRR1643495     2       0          1  0  1  0
#> SRR1643496     2       0          1  0  1  0
#> SRR1643497     2       0          1  0  1  0
#> SRR1643498     2       0          1  0  1  0
#> SRR1643499     2       0          1  0  1  0
#> SRR1643500     2       0          1  0  1  0
#> SRR1643501     2       0          1  0  1  0
#> SRR1643502     2       0          1  0  1  0
#> SRR1643503     2       0          1  0  1  0
#> SRR1643504     2       0          1  0  1  0
#> SRR1643505     2       0          1  0  1  0
#> SRR1643506     2       0          1  0  1  0
#> SRR1643507     2       0          1  0  1  0
#> SRR1643508     2       0          1  0  1  0
#> SRR1643509     2       0          1  0  1  0
#> SRR1643510     2       0          1  0  1  0
#> SRR1643511     2       0          1  0  1  0
#> SRR1643512     2       0          1  0  1  0
#> SRR1643513     2       0          1  0  1  0
#> SRR1643531     2       0          1  0  1  0
#> SRR1643532     2       0          1  0  1  0
#> SRR1643533     2       0          1  0  1  0
#> SRR1643534     2       0          1  0  1  0
#> SRR1643535     2       0          1  0  1  0
#> SRR1643536     2       0          1  0  1  0
#> SRR1643537     2       0          1  0  1  0
#> SRR1643538     2       0          1  0  1  0
#> SRR1643539     2       0          1  0  1  0
#> SRR1643540     2       0          1  0  1  0
#> SRR1643541     2       0          1  0  1  0
#> SRR1643542     2       0          1  0  1  0
#> SRR1643543     2       0          1  0  1  0
#> SRR1643544     2       0          1  0  1  0
#> SRR1643514     2       0          1  0  1  0
#> SRR1643515     2       0          1  0  1  0
#> SRR1643516     2       0          1  0  1  0
#> SRR1643517     2       0          1  0  1  0
#> SRR1643518     2       0          1  0  1  0
#> SRR1643519     2       0          1  0  1  0
#> SRR1643520     2       0          1  0  1  0
#> SRR1643521     2       0          1  0  1  0
#> SRR1643522     2       0          1  0  1  0
#> SRR1643523     2       0          1  0  1  0
#> SRR1643524     2       0          1  0  1  0
#> SRR1643525     2       0          1  0  1  0
#> SRR1643526     2       0          1  0  1  0
#> SRR1643527     2       0          1  0  1  0
#> SRR1643528     2       0          1  0  1  0
#> SRR1643529     2       0          1  0  1  0
#> SRR1643530     2       0          1  0  1  0
#> SRR1643545     2       0          1  0  1  0
#> SRR1643546     2       0          1  0  1  0
#> SRR1643547     2       0          1  0  1  0
#> SRR1643548     2       0          1  0  1  0
#> SRR1643549     2       0          1  0  1  0
#> SRR1643550     2       0          1  0  1  0
#> SRR1643551     2       0          1  0  1  0
#> SRR1643552     2       0          1  0  1  0
#> SRR1643553     2       0          1  0  1  0
#> SRR1643554     2       0          1  0  1  0
#> SRR1643555     2       0          1  0  1  0
#> SRR1643556     2       0          1  0  1  0
#> SRR1643558     2       0          1  0  1  0
#> SRR1643559     2       0          1  0  1  0
#> SRR1643560     2       0          1  0  1  0
#> SRR1643561     2       0          1  0  1  0
#> SRR1643562     2       0          1  0  1  0
#> SRR1643563     2       0          1  0  1  0
#> SRR1643564     2       0          1  0  1  0
#> SRR1643565     2       0          1  0  1  0
#> SRR1643566     2       0          1  0  1  0
#> SRR1643567     2       0          1  0  1  0
#> SRR1643568     2       0          1  0  1  0
#> SRR1643569     2       0          1  0  1  0
#> SRR1643570     2       0          1  0  1  0
#> SRR1643571     2       0          1  0  1  0
#> SRR1643572     2       0          1  0  1  0

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1 p2  p3    p4
#> SRR1643167     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643168     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643169     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643170     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643171     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643172     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643173     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643174     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643175     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643176     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643177     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643178     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643180     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643181     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643182     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643183     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643184     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643185     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643186     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643187     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643188     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643189     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643190     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643191     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643192     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643193     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643194     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643195     1  0.3219      0.910 0.836  0 0.0 0.164
#> SRR1643196     1  0.3219      0.910 0.836  0 0.0 0.164
#> SRR1643197     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643198     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643199     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643200     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643201     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643202     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643203     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643204     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643205     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643206     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643207     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643208     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643209     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643210     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643211     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643212     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643213     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643214     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643215     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643216     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643217     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643218     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643219     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643220     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643221     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643222     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643223     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643224     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643225     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643226     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643227     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643228     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643229     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643230     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643231     4  0.3610      1.000 0.000  0 0.2 0.800
#> SRR1643232     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643233     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643234     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643235     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643236     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643237     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643238     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643239     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643240     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643241     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643242     4  0.3610      1.000 0.000  0 0.2 0.800
#> SRR1643243     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643245     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643246     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643247     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643248     3  0.0000      1.000 0.000  0 1.0 0.000
#> SRR1643249     4  0.3610      1.000 0.000  0 0.2 0.800
#> SRR1643250     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643251     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643252     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643253     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643254     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643255     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643256     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643257     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643258     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643259     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643260     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643261     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643262     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643263     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643264     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643266     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643267     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643268     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643269     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643270     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643271     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643272     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643273     1  0.0000      0.906 1.000  0 0.0 0.000
#> SRR1643274     1  0.0000      0.906 1.000  0 0.0 0.000
#> SRR1643275     1  0.0000      0.906 1.000  0 0.0 0.000
#> SRR1643276     1  0.0000      0.906 1.000  0 0.0 0.000
#> SRR1643277     1  0.0000      0.906 1.000  0 0.0 0.000
#> SRR1643278     1  0.0000      0.906 1.000  0 0.0 0.000
#> SRR1643279     1  0.0000      0.906 1.000  0 0.0 0.000
#> SRR1643280     1  0.0000      0.906 1.000  0 0.0 0.000
#> SRR1643281     1  0.0000      0.906 1.000  0 0.0 0.000
#> SRR1643282     1  0.0000      0.906 1.000  0 0.0 0.000
#> SRR1643283     1  0.0000      0.906 1.000  0 0.0 0.000
#> SRR1643284     1  0.0000      0.906 1.000  0 0.0 0.000
#> SRR1643285     1  0.0000      0.906 1.000  0 0.0 0.000
#> SRR1643286     1  0.0000      0.906 1.000  0 0.0 0.000
#> SRR1643287     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643288     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643289     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643290     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643291     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643292     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643293     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643294     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643295     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643296     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643297     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643298     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643299     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643300     1  0.0188      0.906 0.996  0 0.0 0.004
#> SRR1643301     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643302     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643303     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643304     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643305     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643306     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643307     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643308     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643309     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643310     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643311     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643312     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643313     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643314     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643315     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643316     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643317     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643318     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643319     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643320     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643321     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643322     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643323     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643324     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643325     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643326     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643327     1  0.2973      0.913 0.856  0 0.0 0.144
#> SRR1643328     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643329     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643330     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643331     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643332     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643333     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643334     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643335     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643336     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643337     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643338     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643339     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643340     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643341     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643342     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643343     1  0.2345      0.914 0.900  0 0.0 0.100
#> SRR1643344     1  0.2345      0.914 0.900  0 0.0 0.100
#> SRR1643345     1  0.2345      0.914 0.900  0 0.0 0.100
#> SRR1643346     1  0.2345      0.914 0.900  0 0.0 0.100
#> SRR1643347     1  0.2345      0.914 0.900  0 0.0 0.100
#> SRR1643348     1  0.2345      0.914 0.900  0 0.0 0.100
#> SRR1643349     1  0.2345      0.914 0.900  0 0.0 0.100
#> SRR1643350     1  0.2345      0.914 0.900  0 0.0 0.100
#> SRR1643351     1  0.2345      0.914 0.900  0 0.0 0.100
#> SRR1643352     1  0.2345      0.914 0.900  0 0.0 0.100
#> SRR1643353     1  0.2345      0.914 0.900  0 0.0 0.100
#> SRR1643354     1  0.2345      0.914 0.900  0 0.0 0.100
#> SRR1643355     1  0.2345      0.914 0.900  0 0.0 0.100
#> SRR1643356     1  0.2345      0.914 0.900  0 0.0 0.100
#> SRR1643357     1  0.2345      0.914 0.900  0 0.0 0.100
#> SRR1643358     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643359     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643360     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643361     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643362     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643363     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643364     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643365     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643366     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643367     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643368     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643369     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643370     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643371     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643372     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643373     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643374     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643375     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643376     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643377     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643378     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643379     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643380     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643381     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643382     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643383     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643384     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643385     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643386     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643387     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643388     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643389     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643390     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643391     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643392     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643393     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643394     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643395     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643396     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643397     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643398     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643399     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643400     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643401     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643402     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643403     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643404     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643405     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643406     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643407     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643408     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643409     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643410     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643411     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643412     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643413     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643414     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643415     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643416     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643417     1  0.3172      0.910 0.840  0 0.0 0.160
#> SRR1643418     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643419     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643420     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643421     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643422     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643423     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643424     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643425     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643426     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643427     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643428     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643429     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643430     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643431     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643432     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643433     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643434     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643435     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643436     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643437     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643438     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643439     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643440     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643441     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643442     1  0.1211      0.892 0.960  0 0.0 0.040
#> SRR1643443     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643505     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1 0.0 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1 0.0 0.000

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1    p2    p3    p4 p5
#> SRR1643167     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643168     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643169     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643170     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643171     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643172     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643173     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643174     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643175     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643176     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643177     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643178     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643180     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643181     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643182     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643183     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643184     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643185     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643186     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643187     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643188     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643189     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643190     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643191     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643192     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643193     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643194     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643195     1  0.0162      0.751 0.996 0.000 0.000 0.004 NA
#> SRR1643196     1  0.0162      0.751 0.996 0.000 0.000 0.004 NA
#> SRR1643197     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643198     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643199     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643200     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643201     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643202     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643203     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643204     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643205     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643206     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643207     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643208     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643209     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643210     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643211     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643212     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643213     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643214     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643215     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643216     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643217     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643218     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643219     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643220     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643221     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643222     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643223     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643224     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643225     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643226     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643227     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643228     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643229     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643230     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643231     4  0.4558      1.000 0.000 0.000 0.024 0.652 NA
#> SRR1643232     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643233     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643234     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643235     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643236     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643237     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643238     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643239     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643240     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643241     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643242     4  0.4558      1.000 0.000 0.000 0.024 0.652 NA
#> SRR1643243     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643245     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643246     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643247     3  0.0000      0.998 0.000 0.000 1.000 0.000 NA
#> SRR1643248     3  0.1557      0.934 0.000 0.000 0.940 0.052 NA
#> SRR1643249     4  0.4558      1.000 0.000 0.000 0.024 0.652 NA
#> SRR1643250     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643251     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643252     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643253     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643254     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643255     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643256     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643257     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643258     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643259     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643260     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643261     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643262     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643263     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643264     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643266     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643267     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643268     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643269     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643270     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643271     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643272     1  0.3861      0.752 0.712 0.000 0.000 0.004 NA
#> SRR1643273     1  0.3636      0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643274     1  0.3636      0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643275     1  0.3636      0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643276     1  0.3636      0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643277     1  0.3636      0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643278     1  0.3636      0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643279     1  0.3636      0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643280     1  0.3636      0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643281     1  0.3636      0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643282     1  0.3636      0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643283     1  0.3636      0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643284     1  0.3636      0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643285     1  0.3636      0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643286     1  0.3636      0.757 0.728 0.000 0.000 0.000 NA
#> SRR1643287     1  0.3661      0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643288     1  0.3661      0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643289     1  0.3661      0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643290     1  0.3661      0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643291     1  0.3661      0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643292     1  0.3661      0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643293     1  0.3661      0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643294     1  0.3661      0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643295     1  0.3661      0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643296     1  0.3661      0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643297     1  0.3661      0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643298     1  0.3661      0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643299     1  0.3661      0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643300     1  0.3661      0.756 0.724 0.000 0.000 0.000 NA
#> SRR1643301     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643302     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643303     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643304     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643305     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643306     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643307     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643308     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643309     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643310     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643311     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643312     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643313     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643314     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643315     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643316     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643317     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643318     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643319     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643320     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643321     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643322     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643323     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643324     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643325     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643326     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643327     1  0.2230      0.774 0.884 0.000 0.000 0.000 NA
#> SRR1643328     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643329     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643330     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643331     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643332     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643333     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643334     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643335     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643336     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643337     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643338     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643339     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643340     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643341     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643342     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643343     1  0.2852      0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643344     1  0.2852      0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643345     1  0.2852      0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643346     1  0.2852      0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643347     1  0.2852      0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643348     1  0.2852      0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643349     1  0.2852      0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643350     1  0.2852      0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643351     1  0.2852      0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643352     1  0.2852      0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643353     1  0.2852      0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643354     1  0.2852      0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643355     1  0.2852      0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643356     1  0.2852      0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643357     1  0.2852      0.772 0.828 0.000 0.000 0.000 NA
#> SRR1643358     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643359     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643360     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643361     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643362     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643363     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643364     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643365     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643366     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643367     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643368     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643369     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643370     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643371     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643372     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643373     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643374     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643375     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643376     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643377     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643378     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643379     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643380     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643381     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643382     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643383     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643384     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643385     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643386     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643387     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643388     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643389     1  0.6749      0.520 0.396 0.000 0.000 0.336 NA
#> SRR1643390     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643391     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643392     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643393     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643394     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643395     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643396     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643397     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643398     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643399     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643400     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643401     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643402     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643403     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643404     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643405     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643406     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643407     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643408     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643409     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643410     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643411     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643412     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643413     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643414     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643415     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643416     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643417     1  0.0000      0.751 1.000 0.000 0.000 0.000 NA
#> SRR1643418     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643419     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643420     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643421     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643422     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643423     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643424     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643425     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643426     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643427     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643428     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643429     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643430     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643431     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643432     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643433     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643434     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643435     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643436     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643437     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643438     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643439     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643440     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643441     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643442     1  0.6759      0.506 0.384 0.000 0.000 0.348 NA
#> SRR1643443     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643444     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643445     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643446     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643447     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643448     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643449     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643450     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643451     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643452     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643453     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643454     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643455     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643456     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643457     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643458     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643459     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643460     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643461     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643462     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643463     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643464     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643466     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643467     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643468     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643469     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643470     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643471     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643472     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643473     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643474     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643475     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643477     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643478     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643479     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643480     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643481     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643482     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643483     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643484     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643485     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643486     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643487     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643488     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643489     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643490     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643491     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643492     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643493     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643494     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643495     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643496     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643497     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643498     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643499     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643500     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643501     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643502     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643503     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643504     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643505     2  0.4138      0.399 0.000 0.616 0.000 0.000 NA
#> SRR1643506     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643507     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643508     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643509     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643510     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643511     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643512     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643513     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643531     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643532     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643533     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643534     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643535     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643536     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643537     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643538     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643539     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643540     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643541     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643542     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643543     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643544     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643514     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643515     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643516     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643517     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643518     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643519     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643520     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643521     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643522     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643523     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643524     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643525     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643526     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643527     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643528     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643529     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643530     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643545     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643546     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643547     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643548     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643549     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643550     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643551     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643552     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643553     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643554     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643555     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643556     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643558     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643559     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643560     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643561     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643562     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643563     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643564     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643565     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643566     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643567     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643568     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643569     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643570     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643571     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA
#> SRR1643572     2  0.0000      0.997 0.000 1.000 0.000 0.000 NA

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2   p3    p4   p5    p6
#> SRR1643167     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643168     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643169     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643170     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643171     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643172     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643173     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643174     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643175     1  0.2178      0.871 0.868 0.000 0.00 0.000 0.00 0.132
#> SRR1643176     1  0.2178      0.871 0.868 0.000 0.00 0.000 0.00 0.132
#> SRR1643177     1  0.2178      0.871 0.868 0.000 0.00 0.000 0.00 0.132
#> SRR1643178     1  0.2178      0.871 0.868 0.000 0.00 0.000 0.00 0.132
#> SRR1643180     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643181     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643182     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643183     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643184     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643185     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643186     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643187     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643188     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643189     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643190     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643191     1  0.2178      0.871 0.868 0.000 0.00 0.000 0.00 0.132
#> SRR1643192     1  0.2178      0.871 0.868 0.000 0.00 0.000 0.00 0.132
#> SRR1643193     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643194     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643195     1  0.0146      0.817 0.996 0.000 0.00 0.004 0.00 0.000
#> SRR1643196     1  0.0146      0.817 0.996 0.000 0.00 0.004 0.00 0.000
#> SRR1643197     1  0.2178      0.871 0.868 0.000 0.00 0.000 0.00 0.132
#> SRR1643198     1  0.2178      0.871 0.868 0.000 0.00 0.000 0.00 0.132
#> SRR1643199     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643200     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643201     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643202     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643203     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643204     1  0.0000      0.821 1.000 0.000 0.00 0.000 0.00 0.000
#> SRR1643205     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643206     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643207     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643208     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643209     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643210     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643211     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643212     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643213     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643214     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643215     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643216     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643217     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643218     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643219     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643220     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643221     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643222     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643223     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643224     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643225     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643226     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643227     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643228     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643229     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643230     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643231     5  0.0000      1.000 0.000 0.000 0.00 0.000 1.00 0.000
#> SRR1643232     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643233     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643234     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643235     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643236     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643237     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643238     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643239     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643240     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643241     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643242     5  0.0000      1.000 0.000 0.000 0.00 0.000 1.00 0.000
#> SRR1643243     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643245     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643246     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643247     3  0.0000      0.998 0.000 0.000 1.00 0.000 0.00 0.000
#> SRR1643248     3  0.1267      0.936 0.000 0.000 0.94 0.000 0.06 0.000
#> SRR1643249     5  0.0000      1.000 0.000 0.000 0.00 0.000 1.00 0.000
#> SRR1643250     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643251     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643252     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643253     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643254     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643255     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643256     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643257     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643258     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643259     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643260     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643261     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643262     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643263     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643264     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643266     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643267     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643268     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643269     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643270     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643271     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643272     6  0.5608      0.818 0.148 0.000 0.00 0.380 0.00 0.472
#> SRR1643273     6  0.5578      0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643274     6  0.5578      0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643275     6  0.5578      0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643276     6  0.5578      0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643277     6  0.5578      0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643278     6  0.5578      0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643279     6  0.5578      0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643280     6  0.5578      0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643281     6  0.5578      0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643282     6  0.5578      0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643283     6  0.5578      0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643284     6  0.5578      0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643285     6  0.5578      0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643286     6  0.5578      0.827 0.148 0.000 0.00 0.360 0.00 0.492
#> SRR1643287     6  0.5585      0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643288     6  0.5585      0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643289     6  0.5585      0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643290     6  0.5585      0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643291     6  0.5585      0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643292     6  0.5585      0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643293     6  0.5585      0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643294     6  0.5585      0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643295     6  0.5585      0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643296     6  0.5585      0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643297     6  0.5585      0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643298     6  0.5585      0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643299     6  0.5585      0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643300     6  0.5585      0.824 0.148 0.000 0.00 0.364 0.00 0.488
#> SRR1643301     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643302     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643303     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643304     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643305     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643306     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643307     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643308     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643309     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643310     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643311     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643312     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643313     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643314     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643315     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643316     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643317     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643318     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643319     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643320     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643321     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643322     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643323     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643324     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643325     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643326     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643327     6  0.5842      0.756 0.272 0.000 0.00 0.240 0.00 0.488
#> SRR1643328     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643329     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643330     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643331     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643332     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643333     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643334     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643335     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643336     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643337     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643338     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643339     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643340     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643341     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643342     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643343     6  0.5265      0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643344     6  0.5265      0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643345     6  0.5265      0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643346     6  0.5265      0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643347     6  0.5265      0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643348     6  0.5265      0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643349     6  0.5265      0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643350     6  0.5265      0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643351     6  0.5265      0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643352     6  0.5265      0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643353     6  0.5265      0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643354     6  0.5265      0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643355     6  0.5265      0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643356     6  0.5265      0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643357     6  0.5265      0.816 0.148 0.000 0.00 0.260 0.00 0.592
#> SRR1643358     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643359     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643360     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643361     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643362     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643363     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643364     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643365     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643366     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643367     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643368     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643369     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643370     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643371     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643372     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643373     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643374     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643375     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643376     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643377     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643378     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643379     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643380     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643381     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643382     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643383     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643384     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643385     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643386     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643387     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643388     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643389     4  0.2790      0.834 0.132 0.000 0.00 0.844 0.00 0.024
#> SRR1643390     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643391     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643392     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643393     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643394     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643395     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643396     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643397     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643398     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643399     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643400     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643401     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643402     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643403     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643404     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643405     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643406     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643407     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643408     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643409     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643410     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643411     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643412     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643413     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643414     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643415     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643416     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643417     1  0.2912      0.878 0.784 0.000 0.00 0.000 0.00 0.216
#> SRR1643418     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643419     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643420     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643421     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643422     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643423     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643424     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643425     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643426     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643427     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643428     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643429     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643430     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643431     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643432     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643433     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643434     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643435     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643436     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643437     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643438     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643439     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643440     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643441     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643442     4  0.0000      0.828 0.000 0.000 0.00 1.000 0.00 0.000
#> SRR1643443     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643444     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643445     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643446     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643447     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643448     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643449     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643450     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643451     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643452     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643453     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643454     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643455     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643456     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643457     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643458     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643459     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643460     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643461     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643462     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643463     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643464     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643466     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643467     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643468     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643469     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643470     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643471     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643472     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643473     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643474     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643475     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643477     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643478     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643479     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643480     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643481     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643482     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643483     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643484     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643485     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643486     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643487     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643488     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643489     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643490     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643491     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643492     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643493     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643494     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643495     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643496     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643497     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643498     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643499     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643500     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643501     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643502     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643503     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643504     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643505     2  0.3774      0.337 0.000 0.592 0.00 0.000 0.00 0.408
#> SRR1643506     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643507     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643508     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643509     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643510     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643511     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643512     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643513     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643531     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643532     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643533     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643534     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643535     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643536     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643537     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643538     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643539     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643540     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643541     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643542     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643543     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643544     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643514     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643515     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643516     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643517     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643518     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643519     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643520     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643521     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643522     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643523     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643524     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643525     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643526     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643527     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643528     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643529     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643530     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643545     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643546     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643547     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643548     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643549     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643550     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643551     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643552     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643553     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643554     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643555     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643556     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643558     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643559     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643560     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643561     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643562     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643563     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643564     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643565     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643566     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643567     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643568     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643569     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643570     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643571     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000
#> SRR1643572     2  0.0000      0.997 0.000 1.000 0.00 0.000 0.00 0.000

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-MAD-hclust-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-MAD-hclust-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-MAD-hclust-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-MAD-hclust-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-MAD-hclust-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-MAD-hclust-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-MAD-hclust-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-MAD-hclust-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-MAD-hclust-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-MAD-hclust-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-MAD-hclust-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-MAD-hclust-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-MAD-hclust-get-signatures-3

get_signatures(res, k = 5)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-MAD-hclust-get-signatures-4

get_signatures(res, k = 6)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-MAD-hclust-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-MAD-hclust-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-MAD-hclust-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-MAD-hclust-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-MAD-hclust-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-MAD-hclust-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk MAD-hclust-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-MAD-hclust-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-MAD-hclust-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-MAD-hclust-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-MAD-hclust-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-MAD-hclust-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk MAD-hclust-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


MAD:kmeans

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["MAD", "kmeans"]
# you can also extract it by
# res = res_list["MAD:kmeans"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'MAD' method.
#>   Subgroups are detected by 'kmeans' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 2.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk MAD-kmeans-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk MAD-kmeans-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 0.509           0.977       0.952         0.4086 0.566   0.566
#> 3 3 0.773           0.924       0.897         0.3175 0.874   0.777
#> 4 4 0.555           0.787       0.806         0.1723 1.000   1.000
#> 5 5 0.625           0.728       0.728         0.1128 0.840   0.637
#> 6 6 0.606           0.539       0.689         0.0694 0.913   0.721

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 2

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette    p1    p2
#> SRR1643167     1   0.000      0.980 1.000 0.000
#> SRR1643168     1   0.000      0.980 1.000 0.000
#> SRR1643169     1   0.000      0.980 1.000 0.000
#> SRR1643170     1   0.000      0.980 1.000 0.000
#> SRR1643171     1   0.000      0.980 1.000 0.000
#> SRR1643172     1   0.000      0.980 1.000 0.000
#> SRR1643173     1   0.000      0.980 1.000 0.000
#> SRR1643174     1   0.000      0.980 1.000 0.000
#> SRR1643175     1   0.000      0.980 1.000 0.000
#> SRR1643176     1   0.000      0.980 1.000 0.000
#> SRR1643177     1   0.000      0.980 1.000 0.000
#> SRR1643178     1   0.000      0.980 1.000 0.000
#> SRR1643180     1   0.000      0.980 1.000 0.000
#> SRR1643181     1   0.000      0.980 1.000 0.000
#> SRR1643182     1   0.000      0.980 1.000 0.000
#> SRR1643183     1   0.000      0.980 1.000 0.000
#> SRR1643184     1   0.000      0.980 1.000 0.000
#> SRR1643185     1   0.000      0.980 1.000 0.000
#> SRR1643186     1   0.000      0.980 1.000 0.000
#> SRR1643187     1   0.000      0.980 1.000 0.000
#> SRR1643188     1   0.000      0.980 1.000 0.000
#> SRR1643189     1   0.000      0.980 1.000 0.000
#> SRR1643190     1   0.000      0.980 1.000 0.000
#> SRR1643191     1   0.000      0.980 1.000 0.000
#> SRR1643192     1   0.000      0.980 1.000 0.000
#> SRR1643193     1   0.000      0.980 1.000 0.000
#> SRR1643194     1   0.000      0.980 1.000 0.000
#> SRR1643195     1   0.000      0.980 1.000 0.000
#> SRR1643196     1   0.000      0.980 1.000 0.000
#> SRR1643197     1   0.000      0.980 1.000 0.000
#> SRR1643198     1   0.000      0.980 1.000 0.000
#> SRR1643199     1   0.000      0.980 1.000 0.000
#> SRR1643200     1   0.000      0.980 1.000 0.000
#> SRR1643201     1   0.000      0.980 1.000 0.000
#> SRR1643202     1   0.000      0.980 1.000 0.000
#> SRR1643203     1   0.000      0.980 1.000 0.000
#> SRR1643204     1   0.000      0.980 1.000 0.000
#> SRR1643205     1   0.506      0.893 0.888 0.112
#> SRR1643206     1   0.506      0.893 0.888 0.112
#> SRR1643207     1   0.506      0.893 0.888 0.112
#> SRR1643208     1   0.506      0.893 0.888 0.112
#> SRR1643209     1   0.506      0.893 0.888 0.112
#> SRR1643210     1   0.506      0.893 0.888 0.112
#> SRR1643211     1   0.506      0.893 0.888 0.112
#> SRR1643212     1   0.506      0.893 0.888 0.112
#> SRR1643213     1   0.506      0.893 0.888 0.112
#> SRR1643214     1   0.506      0.893 0.888 0.112
#> SRR1643215     1   0.506      0.893 0.888 0.112
#> SRR1643216     1   0.506      0.893 0.888 0.112
#> SRR1643217     1   0.506      0.893 0.888 0.112
#> SRR1643218     1   0.506      0.893 0.888 0.112
#> SRR1643219     1   0.506      0.893 0.888 0.112
#> SRR1643220     1   0.506      0.893 0.888 0.112
#> SRR1643221     1   0.506      0.893 0.888 0.112
#> SRR1643222     1   0.506      0.893 0.888 0.112
#> SRR1643223     1   0.506      0.893 0.888 0.112
#> SRR1643224     1   0.506      0.893 0.888 0.112
#> SRR1643225     1   0.506      0.893 0.888 0.112
#> SRR1643226     1   0.506      0.893 0.888 0.112
#> SRR1643227     1   0.506      0.893 0.888 0.112
#> SRR1643228     1   0.506      0.893 0.888 0.112
#> SRR1643229     1   0.506      0.893 0.888 0.112
#> SRR1643230     1   0.506      0.893 0.888 0.112
#> SRR1643231     1   0.506      0.893 0.888 0.112
#> SRR1643232     1   0.506      0.893 0.888 0.112
#> SRR1643233     1   0.506      0.893 0.888 0.112
#> SRR1643234     1   0.506      0.893 0.888 0.112
#> SRR1643235     1   0.506      0.893 0.888 0.112
#> SRR1643236     1   0.506      0.893 0.888 0.112
#> SRR1643237     1   0.506      0.893 0.888 0.112
#> SRR1643238     1   0.506      0.893 0.888 0.112
#> SRR1643239     1   0.506      0.893 0.888 0.112
#> SRR1643240     1   0.506      0.893 0.888 0.112
#> SRR1643241     1   0.506      0.893 0.888 0.112
#> SRR1643242     1   0.506      0.893 0.888 0.112
#> SRR1643243     1   0.506      0.893 0.888 0.112
#> SRR1643245     1   0.506      0.893 0.888 0.112
#> SRR1643246     1   0.506      0.893 0.888 0.112
#> SRR1643247     1   0.506      0.893 0.888 0.112
#> SRR1643248     1   0.506      0.893 0.888 0.112
#> SRR1643249     1   0.506      0.893 0.888 0.112
#> SRR1643250     1   0.000      0.980 1.000 0.000
#> SRR1643251     1   0.000      0.980 1.000 0.000
#> SRR1643252     1   0.000      0.980 1.000 0.000
#> SRR1643253     1   0.000      0.980 1.000 0.000
#> SRR1643254     1   0.000      0.980 1.000 0.000
#> SRR1643255     1   0.000      0.980 1.000 0.000
#> SRR1643256     1   0.000      0.980 1.000 0.000
#> SRR1643257     1   0.000      0.980 1.000 0.000
#> SRR1643258     1   0.000      0.980 1.000 0.000
#> SRR1643259     1   0.000      0.980 1.000 0.000
#> SRR1643260     1   0.000      0.980 1.000 0.000
#> SRR1643261     1   0.000      0.980 1.000 0.000
#> SRR1643262     1   0.000      0.980 1.000 0.000
#> SRR1643263     1   0.000      0.980 1.000 0.000
#> SRR1643264     1   0.000      0.980 1.000 0.000
#> SRR1643266     1   0.000      0.980 1.000 0.000
#> SRR1643267     1   0.000      0.980 1.000 0.000
#> SRR1643268     1   0.000      0.980 1.000 0.000
#> SRR1643269     1   0.000      0.980 1.000 0.000
#> SRR1643270     1   0.000      0.980 1.000 0.000
#> SRR1643271     1   0.000      0.980 1.000 0.000
#> SRR1643272     1   0.000      0.980 1.000 0.000
#> SRR1643273     1   0.000      0.980 1.000 0.000
#> SRR1643274     1   0.000      0.980 1.000 0.000
#> SRR1643275     1   0.000      0.980 1.000 0.000
#> SRR1643276     1   0.000      0.980 1.000 0.000
#> SRR1643277     1   0.000      0.980 1.000 0.000
#> SRR1643278     1   0.000      0.980 1.000 0.000
#> SRR1643279     1   0.000      0.980 1.000 0.000
#> SRR1643280     1   0.000      0.980 1.000 0.000
#> SRR1643281     1   0.000      0.980 1.000 0.000
#> SRR1643282     1   0.000      0.980 1.000 0.000
#> SRR1643283     1   0.000      0.980 1.000 0.000
#> SRR1643284     1   0.000      0.980 1.000 0.000
#> SRR1643285     1   0.000      0.980 1.000 0.000
#> SRR1643286     1   0.000      0.980 1.000 0.000
#> SRR1643287     1   0.000      0.980 1.000 0.000
#> SRR1643288     1   0.000      0.980 1.000 0.000
#> SRR1643289     1   0.000      0.980 1.000 0.000
#> SRR1643290     1   0.000      0.980 1.000 0.000
#> SRR1643291     1   0.000      0.980 1.000 0.000
#> SRR1643292     1   0.000      0.980 1.000 0.000
#> SRR1643293     1   0.000      0.980 1.000 0.000
#> SRR1643294     1   0.000      0.980 1.000 0.000
#> SRR1643295     1   0.000      0.980 1.000 0.000
#> SRR1643296     1   0.000      0.980 1.000 0.000
#> SRR1643297     1   0.000      0.980 1.000 0.000
#> SRR1643298     1   0.000      0.980 1.000 0.000
#> SRR1643299     1   0.000      0.980 1.000 0.000
#> SRR1643300     1   0.000      0.980 1.000 0.000
#> SRR1643301     1   0.000      0.980 1.000 0.000
#> SRR1643302     1   0.000      0.980 1.000 0.000
#> SRR1643303     1   0.000      0.980 1.000 0.000
#> SRR1643304     1   0.000      0.980 1.000 0.000
#> SRR1643305     1   0.000      0.980 1.000 0.000
#> SRR1643306     1   0.000      0.980 1.000 0.000
#> SRR1643307     1   0.000      0.980 1.000 0.000
#> SRR1643308     1   0.000      0.980 1.000 0.000
#> SRR1643309     1   0.000      0.980 1.000 0.000
#> SRR1643310     1   0.000      0.980 1.000 0.000
#> SRR1643311     1   0.000      0.980 1.000 0.000
#> SRR1643312     1   0.000      0.980 1.000 0.000
#> SRR1643313     1   0.000      0.980 1.000 0.000
#> SRR1643314     1   0.000      0.980 1.000 0.000
#> SRR1643315     1   0.000      0.980 1.000 0.000
#> SRR1643316     1   0.000      0.980 1.000 0.000
#> SRR1643317     1   0.000      0.980 1.000 0.000
#> SRR1643318     1   0.000      0.980 1.000 0.000
#> SRR1643319     1   0.000      0.980 1.000 0.000
#> SRR1643320     1   0.000      0.980 1.000 0.000
#> SRR1643321     1   0.000      0.980 1.000 0.000
#> SRR1643322     1   0.000      0.980 1.000 0.000
#> SRR1643323     1   0.000      0.980 1.000 0.000
#> SRR1643324     1   0.000      0.980 1.000 0.000
#> SRR1643325     1   0.000      0.980 1.000 0.000
#> SRR1643326     1   0.000      0.980 1.000 0.000
#> SRR1643327     1   0.000      0.980 1.000 0.000
#> SRR1643328     1   0.000      0.980 1.000 0.000
#> SRR1643329     1   0.000      0.980 1.000 0.000
#> SRR1643330     1   0.000      0.980 1.000 0.000
#> SRR1643331     1   0.000      0.980 1.000 0.000
#> SRR1643332     1   0.000      0.980 1.000 0.000
#> SRR1643333     1   0.000      0.980 1.000 0.000
#> SRR1643334     1   0.000      0.980 1.000 0.000
#> SRR1643335     1   0.000      0.980 1.000 0.000
#> SRR1643336     1   0.000      0.980 1.000 0.000
#> SRR1643337     1   0.000      0.980 1.000 0.000
#> SRR1643338     1   0.000      0.980 1.000 0.000
#> SRR1643339     1   0.000      0.980 1.000 0.000
#> SRR1643340     1   0.000      0.980 1.000 0.000
#> SRR1643341     1   0.000      0.980 1.000 0.000
#> SRR1643342     1   0.000      0.980 1.000 0.000
#> SRR1643343     1   0.000      0.980 1.000 0.000
#> SRR1643344     1   0.000      0.980 1.000 0.000
#> SRR1643345     1   0.000      0.980 1.000 0.000
#> SRR1643346     1   0.000      0.980 1.000 0.000
#> SRR1643347     1   0.000      0.980 1.000 0.000
#> SRR1643348     1   0.000      0.980 1.000 0.000
#> SRR1643349     1   0.000      0.980 1.000 0.000
#> SRR1643350     1   0.000      0.980 1.000 0.000
#> SRR1643351     1   0.000      0.980 1.000 0.000
#> SRR1643352     1   0.000      0.980 1.000 0.000
#> SRR1643353     1   0.000      0.980 1.000 0.000
#> SRR1643354     1   0.000      0.980 1.000 0.000
#> SRR1643355     1   0.000      0.980 1.000 0.000
#> SRR1643356     1   0.000      0.980 1.000 0.000
#> SRR1643357     1   0.000      0.980 1.000 0.000
#> SRR1643358     1   0.000      0.980 1.000 0.000
#> SRR1643359     1   0.000      0.980 1.000 0.000
#> SRR1643360     1   0.000      0.980 1.000 0.000
#> SRR1643361     1   0.000      0.980 1.000 0.000
#> SRR1643362     1   0.000      0.980 1.000 0.000
#> SRR1643363     1   0.000      0.980 1.000 0.000
#> SRR1643364     1   0.000      0.980 1.000 0.000
#> SRR1643365     1   0.000      0.980 1.000 0.000
#> SRR1643366     1   0.000      0.980 1.000 0.000
#> SRR1643367     1   0.000      0.980 1.000 0.000
#> SRR1643368     1   0.000      0.980 1.000 0.000
#> SRR1643369     1   0.000      0.980 1.000 0.000
#> SRR1643370     1   0.000      0.980 1.000 0.000
#> SRR1643371     1   0.000      0.980 1.000 0.000
#> SRR1643372     1   0.000      0.980 1.000 0.000
#> SRR1643373     1   0.000      0.980 1.000 0.000
#> SRR1643374     1   0.000      0.980 1.000 0.000
#> SRR1643375     1   0.000      0.980 1.000 0.000
#> SRR1643376     1   0.000      0.980 1.000 0.000
#> SRR1643377     1   0.000      0.980 1.000 0.000
#> SRR1643378     1   0.000      0.980 1.000 0.000
#> SRR1643379     1   0.000      0.980 1.000 0.000
#> SRR1643380     1   0.000      0.980 1.000 0.000
#> SRR1643381     1   0.000      0.980 1.000 0.000
#> SRR1643382     1   0.000      0.980 1.000 0.000
#> SRR1643383     1   0.000      0.980 1.000 0.000
#> SRR1643384     1   0.000      0.980 1.000 0.000
#> SRR1643385     1   0.000      0.980 1.000 0.000
#> SRR1643386     1   0.000      0.980 1.000 0.000
#> SRR1643387     1   0.000      0.980 1.000 0.000
#> SRR1643388     1   0.000      0.980 1.000 0.000
#> SRR1643389     1   0.000      0.980 1.000 0.000
#> SRR1643390     1   0.000      0.980 1.000 0.000
#> SRR1643391     1   0.000      0.980 1.000 0.000
#> SRR1643392     1   0.000      0.980 1.000 0.000
#> SRR1643393     1   0.000      0.980 1.000 0.000
#> SRR1643394     1   0.000      0.980 1.000 0.000
#> SRR1643395     1   0.000      0.980 1.000 0.000
#> SRR1643396     1   0.000      0.980 1.000 0.000
#> SRR1643397     1   0.000      0.980 1.000 0.000
#> SRR1643398     1   0.000      0.980 1.000 0.000
#> SRR1643399     1   0.000      0.980 1.000 0.000
#> SRR1643400     1   0.000      0.980 1.000 0.000
#> SRR1643401     1   0.000      0.980 1.000 0.000
#> SRR1643402     1   0.000      0.980 1.000 0.000
#> SRR1643403     1   0.000      0.980 1.000 0.000
#> SRR1643404     1   0.000      0.980 1.000 0.000
#> SRR1643405     1   0.000      0.980 1.000 0.000
#> SRR1643406     1   0.000      0.980 1.000 0.000
#> SRR1643407     1   0.000      0.980 1.000 0.000
#> SRR1643408     1   0.000      0.980 1.000 0.000
#> SRR1643409     1   0.000      0.980 1.000 0.000
#> SRR1643410     1   0.000      0.980 1.000 0.000
#> SRR1643411     1   0.000      0.980 1.000 0.000
#> SRR1643412     1   0.000      0.980 1.000 0.000
#> SRR1643413     1   0.000      0.980 1.000 0.000
#> SRR1643414     1   0.000      0.980 1.000 0.000
#> SRR1643415     1   0.000      0.980 1.000 0.000
#> SRR1643416     1   0.000      0.980 1.000 0.000
#> SRR1643417     1   0.000      0.980 1.000 0.000
#> SRR1643418     1   0.000      0.980 1.000 0.000
#> SRR1643419     1   0.000      0.980 1.000 0.000
#> SRR1643420     1   0.000      0.980 1.000 0.000
#> SRR1643421     1   0.000      0.980 1.000 0.000
#> SRR1643422     1   0.000      0.980 1.000 0.000
#> SRR1643423     1   0.000      0.980 1.000 0.000
#> SRR1643424     1   0.000      0.980 1.000 0.000
#> SRR1643425     1   0.000      0.980 1.000 0.000
#> SRR1643426     1   0.000      0.980 1.000 0.000
#> SRR1643427     1   0.000      0.980 1.000 0.000
#> SRR1643428     1   0.000      0.980 1.000 0.000
#> SRR1643429     1   0.000      0.980 1.000 0.000
#> SRR1643430     1   0.000      0.980 1.000 0.000
#> SRR1643431     1   0.000      0.980 1.000 0.000
#> SRR1643432     1   0.000      0.980 1.000 0.000
#> SRR1643433     1   0.000      0.980 1.000 0.000
#> SRR1643434     1   0.000      0.980 1.000 0.000
#> SRR1643435     1   0.000      0.980 1.000 0.000
#> SRR1643436     1   0.000      0.980 1.000 0.000
#> SRR1643437     1   0.000      0.980 1.000 0.000
#> SRR1643438     1   0.000      0.980 1.000 0.000
#> SRR1643439     1   0.000      0.980 1.000 0.000
#> SRR1643440     1   0.000      0.980 1.000 0.000
#> SRR1643441     1   0.000      0.980 1.000 0.000
#> SRR1643442     1   0.000      0.980 1.000 0.000
#> SRR1643443     2   0.506      1.000 0.112 0.888
#> SRR1643444     2   0.506      1.000 0.112 0.888
#> SRR1643445     2   0.506      1.000 0.112 0.888
#> SRR1643446     2   0.506      1.000 0.112 0.888
#> SRR1643447     2   0.506      1.000 0.112 0.888
#> SRR1643448     2   0.506      1.000 0.112 0.888
#> SRR1643449     2   0.506      1.000 0.112 0.888
#> SRR1643450     2   0.506      1.000 0.112 0.888
#> SRR1643451     2   0.506      1.000 0.112 0.888
#> SRR1643452     2   0.506      1.000 0.112 0.888
#> SRR1643453     2   0.506      1.000 0.112 0.888
#> SRR1643454     2   0.506      1.000 0.112 0.888
#> SRR1643455     2   0.506      1.000 0.112 0.888
#> SRR1643456     2   0.506      1.000 0.112 0.888
#> SRR1643457     2   0.506      1.000 0.112 0.888
#> SRR1643458     2   0.506      1.000 0.112 0.888
#> SRR1643459     2   0.506      1.000 0.112 0.888
#> SRR1643460     2   0.506      1.000 0.112 0.888
#> SRR1643461     2   0.506      1.000 0.112 0.888
#> SRR1643462     2   0.506      1.000 0.112 0.888
#> SRR1643463     2   0.506      1.000 0.112 0.888
#> SRR1643464     2   0.506      1.000 0.112 0.888
#> SRR1643466     2   0.506      1.000 0.112 0.888
#> SRR1643467     2   0.506      1.000 0.112 0.888
#> SRR1643468     2   0.506      1.000 0.112 0.888
#> SRR1643469     2   0.506      1.000 0.112 0.888
#> SRR1643470     2   0.506      1.000 0.112 0.888
#> SRR1643471     2   0.506      1.000 0.112 0.888
#> SRR1643472     2   0.506      1.000 0.112 0.888
#> SRR1643473     2   0.506      1.000 0.112 0.888
#> SRR1643474     2   0.506      1.000 0.112 0.888
#> SRR1643475     2   0.506      1.000 0.112 0.888
#> SRR1643477     2   0.506      1.000 0.112 0.888
#> SRR1643478     2   0.506      1.000 0.112 0.888
#> SRR1643479     2   0.506      1.000 0.112 0.888
#> SRR1643480     2   0.506      1.000 0.112 0.888
#> SRR1643481     2   0.506      1.000 0.112 0.888
#> SRR1643482     2   0.506      1.000 0.112 0.888
#> SRR1643483     2   0.506      1.000 0.112 0.888
#> SRR1643484     2   0.506      1.000 0.112 0.888
#> SRR1643485     2   0.506      1.000 0.112 0.888
#> SRR1643486     2   0.506      1.000 0.112 0.888
#> SRR1643487     2   0.506      1.000 0.112 0.888
#> SRR1643488     2   0.506      1.000 0.112 0.888
#> SRR1643489     2   0.506      1.000 0.112 0.888
#> SRR1643490     2   0.506      1.000 0.112 0.888
#> SRR1643491     2   0.506      1.000 0.112 0.888
#> SRR1643492     2   0.506      1.000 0.112 0.888
#> SRR1643493     2   0.506      1.000 0.112 0.888
#> SRR1643494     2   0.506      1.000 0.112 0.888
#> SRR1643495     2   0.506      1.000 0.112 0.888
#> SRR1643496     2   0.506      1.000 0.112 0.888
#> SRR1643497     2   0.506      1.000 0.112 0.888
#> SRR1643498     2   0.506      1.000 0.112 0.888
#> SRR1643499     2   0.506      1.000 0.112 0.888
#> SRR1643500     2   0.506      1.000 0.112 0.888
#> SRR1643501     2   0.506      1.000 0.112 0.888
#> SRR1643502     2   0.506      1.000 0.112 0.888
#> SRR1643503     2   0.506      1.000 0.112 0.888
#> SRR1643504     2   0.506      1.000 0.112 0.888
#> SRR1643505     2   0.506      1.000 0.112 0.888
#> SRR1643506     2   0.506      1.000 0.112 0.888
#> SRR1643507     2   0.506      1.000 0.112 0.888
#> SRR1643508     2   0.506      1.000 0.112 0.888
#> SRR1643509     2   0.506      1.000 0.112 0.888
#> SRR1643510     2   0.506      1.000 0.112 0.888
#> SRR1643511     2   0.506      1.000 0.112 0.888
#> SRR1643512     2   0.506      1.000 0.112 0.888
#> SRR1643513     2   0.506      1.000 0.112 0.888
#> SRR1643531     2   0.506      1.000 0.112 0.888
#> SRR1643532     2   0.506      1.000 0.112 0.888
#> SRR1643533     2   0.506      1.000 0.112 0.888
#> SRR1643534     2   0.506      1.000 0.112 0.888
#> SRR1643535     2   0.506      1.000 0.112 0.888
#> SRR1643536     2   0.506      1.000 0.112 0.888
#> SRR1643537     2   0.506      1.000 0.112 0.888
#> SRR1643538     2   0.506      1.000 0.112 0.888
#> SRR1643539     2   0.506      1.000 0.112 0.888
#> SRR1643540     2   0.506      1.000 0.112 0.888
#> SRR1643541     2   0.506      1.000 0.112 0.888
#> SRR1643542     2   0.506      1.000 0.112 0.888
#> SRR1643543     2   0.506      1.000 0.112 0.888
#> SRR1643544     2   0.506      1.000 0.112 0.888
#> SRR1643514     2   0.506      1.000 0.112 0.888
#> SRR1643515     2   0.506      1.000 0.112 0.888
#> SRR1643516     2   0.506      1.000 0.112 0.888
#> SRR1643517     2   0.506      1.000 0.112 0.888
#> SRR1643518     2   0.506      1.000 0.112 0.888
#> SRR1643519     2   0.506      1.000 0.112 0.888
#> SRR1643520     2   0.506      1.000 0.112 0.888
#> SRR1643521     2   0.506      1.000 0.112 0.888
#> SRR1643522     2   0.506      1.000 0.112 0.888
#> SRR1643523     2   0.506      1.000 0.112 0.888
#> SRR1643524     2   0.506      1.000 0.112 0.888
#> SRR1643525     2   0.506      1.000 0.112 0.888
#> SRR1643526     2   0.506      1.000 0.112 0.888
#> SRR1643527     2   0.506      1.000 0.112 0.888
#> SRR1643528     2   0.506      1.000 0.112 0.888
#> SRR1643529     2   0.506      1.000 0.112 0.888
#> SRR1643530     2   0.506      1.000 0.112 0.888
#> SRR1643545     2   0.506      1.000 0.112 0.888
#> SRR1643546     2   0.506      1.000 0.112 0.888
#> SRR1643547     2   0.506      1.000 0.112 0.888
#> SRR1643548     2   0.506      1.000 0.112 0.888
#> SRR1643549     2   0.506      1.000 0.112 0.888
#> SRR1643550     2   0.506      1.000 0.112 0.888
#> SRR1643551     2   0.506      1.000 0.112 0.888
#> SRR1643552     2   0.506      1.000 0.112 0.888
#> SRR1643553     2   0.506      1.000 0.112 0.888
#> SRR1643554     2   0.506      1.000 0.112 0.888
#> SRR1643555     2   0.506      1.000 0.112 0.888
#> SRR1643556     2   0.506      1.000 0.112 0.888
#> SRR1643558     2   0.506      1.000 0.112 0.888
#> SRR1643559     2   0.506      1.000 0.112 0.888
#> SRR1643560     2   0.506      1.000 0.112 0.888
#> SRR1643561     2   0.506      1.000 0.112 0.888
#> SRR1643562     2   0.506      1.000 0.112 0.888
#> SRR1643563     2   0.506      1.000 0.112 0.888
#> SRR1643564     2   0.506      1.000 0.112 0.888
#> SRR1643565     2   0.506      1.000 0.112 0.888
#> SRR1643566     2   0.506      1.000 0.112 0.888
#> SRR1643567     2   0.506      1.000 0.112 0.888
#> SRR1643568     2   0.506      1.000 0.112 0.888
#> SRR1643569     2   0.506      1.000 0.112 0.888
#> SRR1643570     2   0.506      1.000 0.112 0.888
#> SRR1643571     2   0.506      1.000 0.112 0.888
#> SRR1643572     2   0.506      1.000 0.112 0.888

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1    p2    p3
#> SRR1643167     1  0.3686      0.845 0.860 0.000 0.140
#> SRR1643168     1  0.3686      0.845 0.860 0.000 0.140
#> SRR1643169     1  0.3686      0.845 0.860 0.000 0.140
#> SRR1643170     1  0.3686      0.845 0.860 0.000 0.140
#> SRR1643171     1  0.3686      0.845 0.860 0.000 0.140
#> SRR1643172     1  0.3686      0.845 0.860 0.000 0.140
#> SRR1643173     1  0.3686      0.845 0.860 0.000 0.140
#> SRR1643174     1  0.3686      0.845 0.860 0.000 0.140
#> SRR1643175     1  0.2711      0.897 0.912 0.000 0.088
#> SRR1643176     1  0.2711      0.897 0.912 0.000 0.088
#> SRR1643177     1  0.2711      0.897 0.912 0.000 0.088
#> SRR1643178     1  0.2711      0.897 0.912 0.000 0.088
#> SRR1643180     1  0.3686      0.845 0.860 0.000 0.140
#> SRR1643181     1  0.3686      0.845 0.860 0.000 0.140
#> SRR1643182     1  0.3686      0.845 0.860 0.000 0.140
#> SRR1643183     1  0.3686      0.845 0.860 0.000 0.140
#> SRR1643184     1  0.3686      0.845 0.860 0.000 0.140
#> SRR1643185     1  0.3686      0.845 0.860 0.000 0.140
#> SRR1643186     1  0.3686      0.845 0.860 0.000 0.140
#> SRR1643187     1  0.3038      0.875 0.896 0.000 0.104
#> SRR1643188     1  0.3038      0.875 0.896 0.000 0.104
#> SRR1643189     1  0.3038      0.875 0.896 0.000 0.104
#> SRR1643190     1  0.3038      0.875 0.896 0.000 0.104
#> SRR1643191     1  0.3686      0.845 0.860 0.000 0.140
#> SRR1643192     1  0.3686      0.845 0.860 0.000 0.140
#> SRR1643193     1  0.3038      0.875 0.896 0.000 0.104
#> SRR1643194     1  0.3038      0.875 0.896 0.000 0.104
#> SRR1643195     1  0.2448      0.868 0.924 0.000 0.076
#> SRR1643196     1  0.2448      0.868 0.924 0.000 0.076
#> SRR1643197     1  0.3340      0.865 0.880 0.000 0.120
#> SRR1643198     1  0.3340      0.865 0.880 0.000 0.120
#> SRR1643199     1  0.3686      0.845 0.860 0.000 0.140
#> SRR1643200     1  0.3686      0.845 0.860 0.000 0.140
#> SRR1643201     1  0.2711      0.860 0.912 0.000 0.088
#> SRR1643202     1  0.2711      0.860 0.912 0.000 0.088
#> SRR1643203     1  0.3116      0.872 0.892 0.000 0.108
#> SRR1643204     1  0.3116      0.872 0.892 0.000 0.108
#> SRR1643205     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643206     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643207     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643208     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643209     3  0.6373      0.998 0.408 0.004 0.588
#> SRR1643210     3  0.6373      0.998 0.408 0.004 0.588
#> SRR1643211     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643212     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643213     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643214     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643215     3  0.6373      0.998 0.408 0.004 0.588
#> SRR1643216     3  0.6373      0.998 0.408 0.004 0.588
#> SRR1643217     3  0.6373      0.998 0.408 0.004 0.588
#> SRR1643218     3  0.6373      0.998 0.408 0.004 0.588
#> SRR1643219     3  0.6373      0.998 0.408 0.004 0.588
#> SRR1643220     3  0.6373      0.998 0.408 0.004 0.588
#> SRR1643221     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643222     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643223     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643224     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643225     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643226     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643227     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643228     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643229     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643230     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643231     3  0.6373      0.997 0.408 0.004 0.588
#> SRR1643232     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643233     3  0.6540      0.996 0.408 0.008 0.584
#> SRR1643234     3  0.6540      0.996 0.408 0.008 0.584
#> SRR1643235     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643236     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643237     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643238     3  0.6373      0.998 0.408 0.004 0.588
#> SRR1643239     3  0.6373      0.998 0.408 0.004 0.588
#> SRR1643240     3  0.6373      0.998 0.408 0.004 0.588
#> SRR1643241     3  0.6373      0.998 0.408 0.004 0.588
#> SRR1643242     3  0.6540      0.996 0.408 0.008 0.584
#> SRR1643243     3  0.6540      0.996 0.408 0.008 0.584
#> SRR1643245     3  0.6540      0.996 0.408 0.008 0.584
#> SRR1643246     3  0.6540      0.996 0.408 0.008 0.584
#> SRR1643247     3  0.6540      0.996 0.408 0.008 0.584
#> SRR1643248     3  0.6154      0.998 0.408 0.000 0.592
#> SRR1643249     3  0.6540      0.996 0.408 0.008 0.584
#> SRR1643250     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643251     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643252     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643253     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643254     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643255     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643256     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643257     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643258     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643259     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643260     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643261     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643262     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643263     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643264     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643266     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643267     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643268     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643269     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643270     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643271     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643272     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643273     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643274     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643275     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643276     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643277     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643278     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643279     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643280     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643281     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643282     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643283     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643284     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643285     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643286     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643287     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643288     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643289     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643290     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643291     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643292     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643293     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643294     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643295     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643296     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643297     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643298     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643299     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643300     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643301     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643302     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643303     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643304     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643305     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643306     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643307     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643308     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643309     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643310     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643311     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643312     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643313     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643314     1  0.1643      0.919 0.956 0.000 0.044
#> SRR1643315     1  0.1643      0.919 0.956 0.000 0.044
#> SRR1643316     1  0.1643      0.919 0.956 0.000 0.044
#> SRR1643317     1  0.1643      0.919 0.956 0.000 0.044
#> SRR1643318     1  0.1643      0.919 0.956 0.000 0.044
#> SRR1643319     1  0.1643      0.919 0.956 0.000 0.044
#> SRR1643320     1  0.1643      0.919 0.956 0.000 0.044
#> SRR1643321     1  0.1643      0.919 0.956 0.000 0.044
#> SRR1643322     1  0.1643      0.919 0.956 0.000 0.044
#> SRR1643323     1  0.1643      0.919 0.956 0.000 0.044
#> SRR1643324     1  0.1643      0.919 0.956 0.000 0.044
#> SRR1643325     1  0.1643      0.919 0.956 0.000 0.044
#> SRR1643326     1  0.1643      0.919 0.956 0.000 0.044
#> SRR1643327     1  0.1643      0.919 0.956 0.000 0.044
#> SRR1643328     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643329     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643330     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643331     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643332     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643333     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643334     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643335     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643336     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643337     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643338     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643339     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643340     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643341     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643342     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643343     1  0.1643      0.920 0.956 0.000 0.044
#> SRR1643344     1  0.1643      0.920 0.956 0.000 0.044
#> SRR1643345     1  0.1643      0.920 0.956 0.000 0.044
#> SRR1643346     1  0.1643      0.920 0.956 0.000 0.044
#> SRR1643347     1  0.1643      0.920 0.956 0.000 0.044
#> SRR1643348     1  0.1643      0.920 0.956 0.000 0.044
#> SRR1643349     1  0.1643      0.920 0.956 0.000 0.044
#> SRR1643350     1  0.1643      0.920 0.956 0.000 0.044
#> SRR1643351     1  0.1643      0.920 0.956 0.000 0.044
#> SRR1643352     1  0.1643      0.920 0.956 0.000 0.044
#> SRR1643353     1  0.1643      0.920 0.956 0.000 0.044
#> SRR1643354     1  0.1643      0.920 0.956 0.000 0.044
#> SRR1643355     1  0.1643      0.920 0.956 0.000 0.044
#> SRR1643356     1  0.1643      0.920 0.956 0.000 0.044
#> SRR1643357     1  0.1643      0.920 0.956 0.000 0.044
#> SRR1643358     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643359     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643360     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643361     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643362     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643363     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643364     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643365     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643366     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643367     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643368     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643369     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643370     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643371     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643372     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643373     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643374     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643375     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643376     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643377     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643378     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643379     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643380     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643381     1  0.0237      0.927 0.996 0.000 0.004
#> SRR1643382     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643383     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643384     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643385     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643386     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643387     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643388     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643389     1  0.0000      0.930 1.000 0.000 0.000
#> SRR1643390     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643391     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643392     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643393     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643394     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643395     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643396     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643397     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643398     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643399     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643400     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643401     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643402     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643403     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643404     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643405     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643406     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643407     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643408     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643409     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643410     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643411     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643412     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643413     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643414     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643415     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643416     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643417     1  0.2625      0.896 0.916 0.000 0.084
#> SRR1643418     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643419     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643420     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643421     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643422     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643423     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643424     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643425     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643426     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643427     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643428     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643429     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643430     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643431     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643432     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643433     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643434     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643435     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643436     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643437     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643438     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643439     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643440     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643441     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643442     1  0.1753      0.887 0.952 0.000 0.048
#> SRR1643443     2  0.4808      0.913 0.008 0.804 0.188
#> SRR1643444     2  0.4808      0.913 0.008 0.804 0.188
#> SRR1643445     2  0.4808      0.913 0.008 0.804 0.188
#> SRR1643446     2  0.4808      0.913 0.008 0.804 0.188
#> SRR1643447     2  0.4808      0.913 0.008 0.804 0.188
#> SRR1643448     2  0.4808      0.913 0.008 0.804 0.188
#> SRR1643449     2  0.4808      0.913 0.008 0.804 0.188
#> SRR1643450     2  0.4808      0.913 0.008 0.804 0.188
#> SRR1643451     2  0.4808      0.913 0.008 0.804 0.188
#> SRR1643452     2  0.4808      0.913 0.008 0.804 0.188
#> SRR1643453     2  0.4808      0.913 0.008 0.804 0.188
#> SRR1643454     2  0.4808      0.913 0.008 0.804 0.188
#> SRR1643455     2  0.4808      0.913 0.008 0.804 0.188
#> SRR1643456     2  0.1585      0.936 0.008 0.964 0.028
#> SRR1643457     2  0.1585      0.936 0.008 0.964 0.028
#> SRR1643458     2  0.1585      0.936 0.008 0.964 0.028
#> SRR1643459     2  0.1585      0.936 0.008 0.964 0.028
#> SRR1643460     2  0.1585      0.936 0.008 0.964 0.028
#> SRR1643461     2  0.1585      0.936 0.008 0.964 0.028
#> SRR1643462     2  0.1585      0.936 0.008 0.964 0.028
#> SRR1643463     2  0.1585      0.936 0.008 0.964 0.028
#> SRR1643464     2  0.1585      0.936 0.008 0.964 0.028
#> SRR1643466     2  0.1585      0.936 0.008 0.964 0.028
#> SRR1643467     2  0.1585      0.936 0.008 0.964 0.028
#> SRR1643468     2  0.1950      0.936 0.008 0.952 0.040
#> SRR1643469     2  0.1950      0.936 0.008 0.952 0.040
#> SRR1643470     2  0.1950      0.936 0.008 0.952 0.040
#> SRR1643471     2  0.1950      0.936 0.008 0.952 0.040
#> SRR1643472     2  0.1950      0.936 0.008 0.952 0.040
#> SRR1643473     2  0.1950      0.936 0.008 0.952 0.040
#> SRR1643474     2  0.1950      0.936 0.008 0.952 0.040
#> SRR1643475     2  0.1950      0.936 0.008 0.952 0.040
#> SRR1643477     2  0.1950      0.936 0.008 0.952 0.040
#> SRR1643478     2  0.1950      0.936 0.008 0.952 0.040
#> SRR1643479     2  0.1950      0.936 0.008 0.952 0.040
#> SRR1643480     2  0.1950      0.936 0.008 0.952 0.040
#> SRR1643481     2  0.1832      0.935 0.008 0.956 0.036
#> SRR1643482     2  0.1832      0.935 0.008 0.956 0.036
#> SRR1643483     2  0.1832      0.935 0.008 0.956 0.036
#> SRR1643484     2  0.1832      0.935 0.008 0.956 0.036
#> SRR1643485     2  0.1832      0.935 0.008 0.956 0.036
#> SRR1643486     2  0.1832      0.935 0.008 0.956 0.036
#> SRR1643487     2  0.1832      0.935 0.008 0.956 0.036
#> SRR1643488     2  0.1832      0.935 0.008 0.956 0.036
#> SRR1643489     2  0.1832      0.935 0.008 0.956 0.036
#> SRR1643490     2  0.1832      0.935 0.008 0.956 0.036
#> SRR1643491     2  0.1832      0.935 0.008 0.956 0.036
#> SRR1643492     2  0.1832      0.935 0.008 0.956 0.036
#> SRR1643493     2  0.1832      0.935 0.008 0.956 0.036
#> SRR1643494     2  0.1832      0.935 0.008 0.956 0.036
#> SRR1643495     2  0.1832      0.935 0.008 0.956 0.036
#> SRR1643496     2  0.1832      0.935 0.008 0.956 0.036
#> SRR1643497     2  0.2584      0.932 0.008 0.928 0.064
#> SRR1643498     2  0.2584      0.932 0.008 0.928 0.064
#> SRR1643499     2  0.2584      0.932 0.008 0.928 0.064
#> SRR1643500     2  0.2584      0.932 0.008 0.928 0.064
#> SRR1643501     2  0.2584      0.932 0.008 0.928 0.064
#> SRR1643502     2  0.2584      0.932 0.008 0.928 0.064
#> SRR1643503     2  0.2584      0.932 0.008 0.928 0.064
#> SRR1643504     2  0.2584      0.932 0.008 0.928 0.064
#> SRR1643505     2  0.2774      0.930 0.008 0.920 0.072
#> SRR1643506     2  0.2584      0.932 0.008 0.928 0.064
#> SRR1643507     2  0.2584      0.932 0.008 0.928 0.064
#> SRR1643508     2  0.2584      0.932 0.008 0.928 0.064
#> SRR1643509     2  0.2584      0.932 0.008 0.928 0.064
#> SRR1643510     2  0.2584      0.932 0.008 0.928 0.064
#> SRR1643511     2  0.2584      0.932 0.008 0.928 0.064
#> SRR1643512     2  0.2584      0.932 0.008 0.928 0.064
#> SRR1643513     2  0.2584      0.932 0.008 0.928 0.064
#> SRR1643531     2  0.4353      0.921 0.008 0.836 0.156
#> SRR1643532     2  0.4353      0.921 0.008 0.836 0.156
#> SRR1643533     2  0.4353      0.921 0.008 0.836 0.156
#> SRR1643534     2  0.4353      0.921 0.008 0.836 0.156
#> SRR1643535     2  0.4353      0.921 0.008 0.836 0.156
#> SRR1643536     2  0.4353      0.921 0.008 0.836 0.156
#> SRR1643537     2  0.4353      0.921 0.008 0.836 0.156
#> SRR1643538     2  0.4353      0.921 0.008 0.836 0.156
#> SRR1643539     2  0.4353      0.921 0.008 0.836 0.156
#> SRR1643540     2  0.4353      0.921 0.008 0.836 0.156
#> SRR1643541     2  0.4353      0.921 0.008 0.836 0.156
#> SRR1643542     2  0.4353      0.921 0.008 0.836 0.156
#> SRR1643543     2  0.4353      0.921 0.008 0.836 0.156
#> SRR1643544     2  0.4353      0.921 0.008 0.836 0.156
#> SRR1643514     2  0.3826      0.929 0.008 0.868 0.124
#> SRR1643515     2  0.3826      0.929 0.008 0.868 0.124
#> SRR1643516     2  0.3826      0.929 0.008 0.868 0.124
#> SRR1643517     2  0.3826      0.929 0.008 0.868 0.124
#> SRR1643518     2  0.3826      0.929 0.008 0.868 0.124
#> SRR1643519     2  0.3826      0.929 0.008 0.868 0.124
#> SRR1643520     2  0.3826      0.929 0.008 0.868 0.124
#> SRR1643521     2  0.3826      0.929 0.008 0.868 0.124
#> SRR1643522     2  0.3826      0.929 0.008 0.868 0.124
#> SRR1643523     2  0.3826      0.929 0.008 0.868 0.124
#> SRR1643524     2  0.3826      0.929 0.008 0.868 0.124
#> SRR1643525     2  0.3826      0.929 0.008 0.868 0.124
#> SRR1643526     2  0.3826      0.929 0.008 0.868 0.124
#> SRR1643527     2  0.3826      0.929 0.008 0.868 0.124
#> SRR1643528     2  0.3826      0.929 0.008 0.868 0.124
#> SRR1643529     2  0.3826      0.929 0.008 0.868 0.124
#> SRR1643530     2  0.3826      0.929 0.008 0.868 0.124
#> SRR1643545     2  0.2063      0.937 0.008 0.948 0.044
#> SRR1643546     2  0.2063      0.937 0.008 0.948 0.044
#> SRR1643547     2  0.2063      0.937 0.008 0.948 0.044
#> SRR1643548     2  0.2063      0.937 0.008 0.948 0.044
#> SRR1643549     2  0.2063      0.937 0.008 0.948 0.044
#> SRR1643550     2  0.2063      0.937 0.008 0.948 0.044
#> SRR1643551     2  0.2063      0.937 0.008 0.948 0.044
#> SRR1643552     2  0.2063      0.937 0.008 0.948 0.044
#> SRR1643553     2  0.2063      0.937 0.008 0.948 0.044
#> SRR1643554     2  0.2063      0.937 0.008 0.948 0.044
#> SRR1643555     2  0.2063      0.937 0.008 0.948 0.044
#> SRR1643556     2  0.2063      0.937 0.008 0.948 0.044
#> SRR1643558     2  0.2063      0.937 0.008 0.948 0.044
#> SRR1643559     2  0.3755      0.929 0.008 0.872 0.120
#> SRR1643560     2  0.3755      0.929 0.008 0.872 0.120
#> SRR1643561     2  0.3755      0.929 0.008 0.872 0.120
#> SRR1643562     2  0.3755      0.929 0.008 0.872 0.120
#> SRR1643563     2  0.3755      0.929 0.008 0.872 0.120
#> SRR1643564     2  0.3755      0.929 0.008 0.872 0.120
#> SRR1643565     2  0.3755      0.929 0.008 0.872 0.120
#> SRR1643566     2  0.3755      0.929 0.008 0.872 0.120
#> SRR1643567     2  0.3755      0.929 0.008 0.872 0.120
#> SRR1643568     2  0.3755      0.929 0.008 0.872 0.120
#> SRR1643569     2  0.3755      0.929 0.008 0.872 0.120
#> SRR1643570     2  0.3755      0.929 0.008 0.872 0.120
#> SRR1643571     2  0.3755      0.929 0.008 0.872 0.120
#> SRR1643572     2  0.3755      0.929 0.008 0.872 0.120

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1    p2    p3    p4
#> SRR1643167     1   0.531      0.631 0.740 0.000 0.084 0.176
#> SRR1643168     1   0.531      0.631 0.740 0.000 0.084 0.176
#> SRR1643169     1   0.531      0.631 0.740 0.000 0.084 0.176
#> SRR1643170     1   0.531      0.631 0.740 0.000 0.084 0.176
#> SRR1643171     1   0.531      0.631 0.740 0.000 0.084 0.176
#> SRR1643172     1   0.531      0.631 0.740 0.000 0.084 0.176
#> SRR1643173     1   0.531      0.631 0.740 0.000 0.084 0.176
#> SRR1643174     1   0.531      0.631 0.740 0.000 0.084 0.176
#> SRR1643175     1   0.461      0.676 0.792 0.000 0.064 0.144
#> SRR1643176     1   0.461      0.676 0.792 0.000 0.064 0.144
#> SRR1643177     1   0.461      0.676 0.792 0.000 0.064 0.144
#> SRR1643178     1   0.461      0.676 0.792 0.000 0.064 0.144
#> SRR1643180     1   0.531      0.631 0.740 0.000 0.084 0.176
#> SRR1643181     1   0.531      0.631 0.740 0.000 0.084 0.176
#> SRR1643182     1   0.531      0.631 0.740 0.000 0.084 0.176
#> SRR1643183     1   0.531      0.631 0.740 0.000 0.084 0.176
#> SRR1643184     1   0.531      0.631 0.740 0.000 0.084 0.176
#> SRR1643185     1   0.531      0.631 0.740 0.000 0.084 0.176
#> SRR1643186     1   0.531      0.631 0.740 0.000 0.084 0.176
#> SRR1643187     1   0.451      0.664 0.784 0.000 0.040 0.176
#> SRR1643188     1   0.451      0.664 0.784 0.000 0.040 0.176
#> SRR1643189     1   0.451      0.664 0.784 0.000 0.040 0.176
#> SRR1643190     1   0.451      0.664 0.784 0.000 0.040 0.176
#> SRR1643191     1   0.531      0.631 0.740 0.000 0.084 0.176
#> SRR1643192     1   0.531      0.631 0.740 0.000 0.084 0.176
#> SRR1643193     1   0.451      0.664 0.784 0.000 0.040 0.176
#> SRR1643194     1   0.451      0.664 0.784 0.000 0.040 0.176
#> SRR1643195     1   0.513      0.697 0.692 0.000 0.028 0.280
#> SRR1643196     1   0.513      0.697 0.692 0.000 0.028 0.280
#> SRR1643197     1   0.501      0.651 0.764 0.000 0.076 0.160
#> SRR1643198     1   0.501      0.651 0.764 0.000 0.076 0.160
#> SRR1643199     1   0.531      0.631 0.740 0.000 0.084 0.176
#> SRR1643200     1   0.531      0.631 0.740 0.000 0.084 0.176
#> SRR1643201     1   0.424      0.668 0.796 0.000 0.028 0.176
#> SRR1643202     1   0.424      0.668 0.796 0.000 0.028 0.176
#> SRR1643203     1   0.483      0.654 0.768 0.000 0.056 0.176
#> SRR1643204     1   0.483      0.654 0.768 0.000 0.056 0.176
#> SRR1643205     3   0.395      0.988 0.216 0.000 0.780 0.004
#> SRR1643206     3   0.395      0.988 0.216 0.000 0.780 0.004
#> SRR1643207     3   0.395      0.988 0.216 0.000 0.780 0.004
#> SRR1643208     3   0.395      0.988 0.216 0.000 0.780 0.004
#> SRR1643209     3   0.464      0.986 0.216 0.000 0.756 0.028
#> SRR1643210     3   0.464      0.986 0.216 0.000 0.756 0.028
#> SRR1643211     3   0.376      0.989 0.216 0.000 0.784 0.000
#> SRR1643212     3   0.376      0.989 0.216 0.000 0.784 0.000
#> SRR1643213     3   0.376      0.989 0.216 0.000 0.784 0.000
#> SRR1643214     3   0.376      0.989 0.216 0.000 0.784 0.000
#> SRR1643215     3   0.464      0.986 0.216 0.000 0.756 0.028
#> SRR1643216     3   0.464      0.986 0.216 0.000 0.756 0.028
#> SRR1643217     3   0.464      0.986 0.216 0.000 0.756 0.028
#> SRR1643218     3   0.464      0.986 0.216 0.000 0.756 0.028
#> SRR1643219     3   0.464      0.986 0.216 0.000 0.756 0.028
#> SRR1643220     3   0.464      0.986 0.216 0.000 0.756 0.028
#> SRR1643221     3   0.409      0.988 0.216 0.000 0.776 0.008
#> SRR1643222     3   0.409      0.988 0.216 0.000 0.776 0.008
#> SRR1643223     3   0.395      0.988 0.216 0.000 0.780 0.004
#> SRR1643224     3   0.395      0.988 0.216 0.000 0.780 0.004
#> SRR1643225     3   0.395      0.988 0.216 0.000 0.780 0.004
#> SRR1643226     3   0.395      0.988 0.216 0.000 0.780 0.004
#> SRR1643227     3   0.395      0.988 0.216 0.000 0.780 0.004
#> SRR1643228     3   0.395      0.988 0.216 0.000 0.780 0.004
#> SRR1643229     3   0.395      0.988 0.216 0.000 0.780 0.004
#> SRR1643230     3   0.395      0.988 0.216 0.000 0.780 0.004
#> SRR1643231     3   0.454      0.987 0.216 0.000 0.760 0.024
#> SRR1643232     3   0.395      0.988 0.216 0.000 0.780 0.004
#> SRR1643233     3   0.490      0.982 0.216 0.000 0.744 0.040
#> SRR1643234     3   0.490      0.982 0.216 0.000 0.744 0.040
#> SRR1643235     3   0.395      0.988 0.216 0.000 0.780 0.004
#> SRR1643236     3   0.395      0.988 0.216 0.000 0.780 0.004
#> SRR1643237     3   0.395      0.988 0.216 0.000 0.780 0.004
#> SRR1643238     3   0.433      0.988 0.216 0.000 0.768 0.016
#> SRR1643239     3   0.433      0.988 0.216 0.000 0.768 0.016
#> SRR1643240     3   0.433      0.988 0.216 0.000 0.768 0.016
#> SRR1643241     3   0.433      0.988 0.216 0.000 0.768 0.016
#> SRR1643242     3   0.490      0.982 0.216 0.000 0.744 0.040
#> SRR1643243     3   0.482      0.983 0.216 0.000 0.748 0.036
#> SRR1643245     3   0.482      0.983 0.216 0.000 0.748 0.036
#> SRR1643246     3   0.482      0.983 0.216 0.000 0.748 0.036
#> SRR1643247     3   0.482      0.983 0.216 0.000 0.748 0.036
#> SRR1643248     3   0.421      0.988 0.216 0.000 0.772 0.012
#> SRR1643249     3   0.629      0.891 0.236 0.000 0.648 0.116
#> SRR1643250     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643251     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643252     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643253     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643254     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643255     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643256     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643257     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643258     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643259     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643260     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643261     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643262     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643263     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643264     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643266     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643267     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643268     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643269     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643270     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643271     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643272     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643273     1   0.234      0.774 0.900 0.000 0.000 0.100
#> SRR1643274     1   0.234      0.774 0.900 0.000 0.000 0.100
#> SRR1643275     1   0.234      0.774 0.900 0.000 0.000 0.100
#> SRR1643276     1   0.234      0.774 0.900 0.000 0.000 0.100
#> SRR1643277     1   0.234      0.774 0.900 0.000 0.000 0.100
#> SRR1643278     1   0.234      0.774 0.900 0.000 0.000 0.100
#> SRR1643279     1   0.234      0.774 0.900 0.000 0.000 0.100
#> SRR1643280     1   0.234      0.774 0.900 0.000 0.000 0.100
#> SRR1643281     1   0.234      0.774 0.900 0.000 0.000 0.100
#> SRR1643282     1   0.234      0.774 0.900 0.000 0.000 0.100
#> SRR1643283     1   0.234      0.774 0.900 0.000 0.000 0.100
#> SRR1643284     1   0.234      0.774 0.900 0.000 0.000 0.100
#> SRR1643285     1   0.234      0.774 0.900 0.000 0.000 0.100
#> SRR1643286     1   0.234      0.774 0.900 0.000 0.000 0.100
#> SRR1643287     1   0.430      0.735 0.752 0.000 0.008 0.240
#> SRR1643288     1   0.430      0.735 0.752 0.000 0.008 0.240
#> SRR1643289     1   0.430      0.735 0.752 0.000 0.008 0.240
#> SRR1643290     1   0.430      0.735 0.752 0.000 0.008 0.240
#> SRR1643291     1   0.430      0.735 0.752 0.000 0.008 0.240
#> SRR1643292     1   0.430      0.735 0.752 0.000 0.008 0.240
#> SRR1643293     1   0.430      0.735 0.752 0.000 0.008 0.240
#> SRR1643294     1   0.430      0.735 0.752 0.000 0.008 0.240
#> SRR1643295     1   0.430      0.735 0.752 0.000 0.008 0.240
#> SRR1643296     1   0.430      0.735 0.752 0.000 0.008 0.240
#> SRR1643297     1   0.430      0.735 0.752 0.000 0.008 0.240
#> SRR1643298     1   0.430      0.735 0.752 0.000 0.008 0.240
#> SRR1643299     1   0.430      0.735 0.752 0.000 0.008 0.240
#> SRR1643300     1   0.430      0.735 0.752 0.000 0.008 0.240
#> SRR1643301     1   0.215      0.775 0.912 0.000 0.000 0.088
#> SRR1643302     1   0.215      0.775 0.912 0.000 0.000 0.088
#> SRR1643303     1   0.215      0.775 0.912 0.000 0.000 0.088
#> SRR1643304     1   0.215      0.775 0.912 0.000 0.000 0.088
#> SRR1643305     1   0.215      0.775 0.912 0.000 0.000 0.088
#> SRR1643306     1   0.215      0.775 0.912 0.000 0.000 0.088
#> SRR1643307     1   0.215      0.775 0.912 0.000 0.000 0.088
#> SRR1643308     1   0.215      0.775 0.912 0.000 0.000 0.088
#> SRR1643309     1   0.215      0.775 0.912 0.000 0.000 0.088
#> SRR1643310     1   0.215      0.775 0.912 0.000 0.000 0.088
#> SRR1643311     1   0.215      0.775 0.912 0.000 0.000 0.088
#> SRR1643312     1   0.215      0.775 0.912 0.000 0.000 0.088
#> SRR1643313     1   0.215      0.775 0.912 0.000 0.000 0.088
#> SRR1643314     1   0.236      0.745 0.920 0.000 0.056 0.024
#> SRR1643315     1   0.236      0.745 0.920 0.000 0.056 0.024
#> SRR1643316     1   0.236      0.745 0.920 0.000 0.056 0.024
#> SRR1643317     1   0.236      0.745 0.920 0.000 0.056 0.024
#> SRR1643318     1   0.236      0.745 0.920 0.000 0.056 0.024
#> SRR1643319     1   0.220      0.749 0.928 0.000 0.048 0.024
#> SRR1643320     1   0.236      0.745 0.920 0.000 0.056 0.024
#> SRR1643321     1   0.236      0.745 0.920 0.000 0.056 0.024
#> SRR1643322     1   0.236      0.745 0.920 0.000 0.056 0.024
#> SRR1643323     1   0.236      0.745 0.920 0.000 0.056 0.024
#> SRR1643324     1   0.236      0.745 0.920 0.000 0.056 0.024
#> SRR1643325     1   0.236      0.745 0.920 0.000 0.056 0.024
#> SRR1643326     1   0.236      0.745 0.920 0.000 0.056 0.024
#> SRR1643327     1   0.236      0.745 0.920 0.000 0.056 0.024
#> SRR1643328     1   0.390      0.711 0.844 0.000 0.076 0.080
#> SRR1643329     1   0.390      0.711 0.844 0.000 0.076 0.080
#> SRR1643330     1   0.390      0.711 0.844 0.000 0.076 0.080
#> SRR1643331     1   0.390      0.711 0.844 0.000 0.076 0.080
#> SRR1643332     1   0.390      0.711 0.844 0.000 0.076 0.080
#> SRR1643333     1   0.390      0.711 0.844 0.000 0.076 0.080
#> SRR1643334     1   0.397      0.709 0.840 0.000 0.076 0.084
#> SRR1643335     1   0.390      0.711 0.844 0.000 0.076 0.080
#> SRR1643336     1   0.390      0.711 0.844 0.000 0.076 0.080
#> SRR1643337     1   0.390      0.711 0.844 0.000 0.076 0.080
#> SRR1643338     1   0.390      0.711 0.844 0.000 0.076 0.080
#> SRR1643339     1   0.390      0.711 0.844 0.000 0.076 0.080
#> SRR1643340     1   0.390      0.711 0.844 0.000 0.076 0.080
#> SRR1643341     1   0.390      0.711 0.844 0.000 0.076 0.080
#> SRR1643342     1   0.390      0.711 0.844 0.000 0.076 0.080
#> SRR1643343     1   0.316      0.752 0.884 0.000 0.068 0.048
#> SRR1643344     1   0.316      0.752 0.884 0.000 0.068 0.048
#> SRR1643345     1   0.316      0.752 0.884 0.000 0.068 0.048
#> SRR1643346     1   0.316      0.752 0.884 0.000 0.068 0.048
#> SRR1643347     1   0.316      0.752 0.884 0.000 0.068 0.048
#> SRR1643348     1   0.316      0.752 0.884 0.000 0.068 0.048
#> SRR1643349     1   0.316      0.752 0.884 0.000 0.068 0.048
#> SRR1643350     1   0.316      0.752 0.884 0.000 0.068 0.048
#> SRR1643351     1   0.316      0.752 0.884 0.000 0.068 0.048
#> SRR1643352     1   0.316      0.752 0.884 0.000 0.068 0.048
#> SRR1643353     1   0.316      0.752 0.884 0.000 0.068 0.048
#> SRR1643354     1   0.316      0.752 0.884 0.000 0.068 0.048
#> SRR1643355     1   0.316      0.752 0.884 0.000 0.068 0.048
#> SRR1643356     1   0.316      0.752 0.884 0.000 0.068 0.048
#> SRR1643357     1   0.316      0.752 0.884 0.000 0.068 0.048
#> SRR1643358     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643359     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643360     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643361     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643362     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643363     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643364     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643365     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643366     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643367     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643368     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643369     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643370     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643371     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643372     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643373     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643374     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643375     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643376     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643377     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643378     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643379     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643380     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643381     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643382     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643383     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643384     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643385     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643386     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643387     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643388     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643389     1   0.371      0.755 0.804 0.000 0.004 0.192
#> SRR1643390     1   0.369      0.718 0.856 0.000 0.076 0.068
#> SRR1643391     1   0.369      0.718 0.856 0.000 0.076 0.068
#> SRR1643392     1   0.369      0.718 0.856 0.000 0.076 0.068
#> SRR1643393     1   0.369      0.718 0.856 0.000 0.076 0.068
#> SRR1643394     1   0.369      0.718 0.856 0.000 0.076 0.068
#> SRR1643395     1   0.369      0.718 0.856 0.000 0.076 0.068
#> SRR1643396     1   0.369      0.718 0.856 0.000 0.076 0.068
#> SRR1643397     1   0.369      0.718 0.856 0.000 0.076 0.068
#> SRR1643398     1   0.369      0.718 0.856 0.000 0.076 0.068
#> SRR1643399     1   0.369      0.718 0.856 0.000 0.076 0.068
#> SRR1643400     1   0.369      0.718 0.856 0.000 0.076 0.068
#> SRR1643401     1   0.369      0.718 0.856 0.000 0.076 0.068
#> SRR1643402     1   0.369      0.718 0.856 0.000 0.076 0.068
#> SRR1643403     1   0.369      0.718 0.856 0.000 0.076 0.068
#> SRR1643404     1   0.369      0.718 0.856 0.000 0.076 0.068
#> SRR1643405     1   0.383      0.716 0.848 0.000 0.076 0.076
#> SRR1643406     1   0.383      0.716 0.848 0.000 0.076 0.076
#> SRR1643407     1   0.383      0.716 0.848 0.000 0.076 0.076
#> SRR1643408     1   0.383      0.716 0.848 0.000 0.076 0.076
#> SRR1643409     1   0.383      0.716 0.848 0.000 0.076 0.076
#> SRR1643410     1   0.383      0.716 0.848 0.000 0.076 0.076
#> SRR1643411     1   0.383      0.716 0.848 0.000 0.076 0.076
#> SRR1643412     1   0.383      0.716 0.848 0.000 0.076 0.076
#> SRR1643413     1   0.383      0.716 0.848 0.000 0.076 0.076
#> SRR1643414     1   0.383      0.716 0.848 0.000 0.076 0.076
#> SRR1643415     1   0.383      0.716 0.848 0.000 0.076 0.076
#> SRR1643416     1   0.383      0.716 0.848 0.000 0.076 0.076
#> SRR1643417     1   0.383      0.716 0.848 0.000 0.076 0.076
#> SRR1643418     1   0.525      0.644 0.660 0.000 0.024 0.316
#> SRR1643419     1   0.525      0.644 0.660 0.000 0.024 0.316
#> SRR1643420     1   0.525      0.644 0.660 0.000 0.024 0.316
#> SRR1643421     1   0.525      0.644 0.660 0.000 0.024 0.316
#> SRR1643422     1   0.525      0.644 0.660 0.000 0.024 0.316
#> SRR1643423     1   0.525      0.644 0.660 0.000 0.024 0.316
#> SRR1643424     1   0.525      0.644 0.660 0.000 0.024 0.316
#> SRR1643425     1   0.525      0.644 0.660 0.000 0.024 0.316
#> SRR1643426     1   0.525      0.644 0.660 0.000 0.024 0.316
#> SRR1643427     1   0.525      0.644 0.660 0.000 0.024 0.316
#> SRR1643428     1   0.525      0.644 0.660 0.000 0.024 0.316
#> SRR1643429     1   0.525      0.644 0.660 0.000 0.024 0.316
#> SRR1643430     1   0.523      0.646 0.664 0.000 0.024 0.312
#> SRR1643431     1   0.523      0.646 0.664 0.000 0.024 0.312
#> SRR1643432     1   0.523      0.646 0.664 0.000 0.024 0.312
#> SRR1643433     1   0.523      0.646 0.664 0.000 0.024 0.312
#> SRR1643434     1   0.523      0.646 0.664 0.000 0.024 0.312
#> SRR1643435     1   0.523      0.646 0.664 0.000 0.024 0.312
#> SRR1643436     1   0.523      0.646 0.664 0.000 0.024 0.312
#> SRR1643437     1   0.523      0.646 0.664 0.000 0.024 0.312
#> SRR1643438     1   0.523      0.646 0.664 0.000 0.024 0.312
#> SRR1643439     1   0.523      0.646 0.664 0.000 0.024 0.312
#> SRR1643440     1   0.523      0.646 0.664 0.000 0.024 0.312
#> SRR1643441     1   0.523      0.646 0.664 0.000 0.024 0.312
#> SRR1643442     1   0.523      0.646 0.664 0.000 0.024 0.312
#> SRR1643443     2   0.449      0.806 0.000 0.808 0.092 0.100
#> SRR1643444     2   0.449      0.806 0.000 0.808 0.092 0.100
#> SRR1643445     2   0.449      0.806 0.000 0.808 0.092 0.100
#> SRR1643446     2   0.449      0.806 0.000 0.808 0.092 0.100
#> SRR1643447     2   0.449      0.806 0.000 0.808 0.092 0.100
#> SRR1643448     2   0.449      0.806 0.000 0.808 0.092 0.100
#> SRR1643449     2   0.449      0.806 0.000 0.808 0.092 0.100
#> SRR1643450     2   0.449      0.806 0.000 0.808 0.092 0.100
#> SRR1643451     2   0.449      0.806 0.000 0.808 0.092 0.100
#> SRR1643452     2   0.449      0.806 0.000 0.808 0.092 0.100
#> SRR1643453     2   0.449      0.806 0.000 0.808 0.092 0.100
#> SRR1643454     2   0.449      0.806 0.000 0.808 0.092 0.100
#> SRR1643455     2   0.449      0.806 0.000 0.808 0.092 0.100
#> SRR1643456     2   0.407      0.858 0.000 0.748 0.000 0.252
#> SRR1643457     2   0.407      0.858 0.000 0.748 0.000 0.252
#> SRR1643458     2   0.407      0.858 0.000 0.748 0.000 0.252
#> SRR1643459     2   0.407      0.858 0.000 0.748 0.000 0.252
#> SRR1643460     2   0.407      0.858 0.000 0.748 0.000 0.252
#> SRR1643461     2   0.407      0.858 0.000 0.748 0.000 0.252
#> SRR1643462     2   0.407      0.858 0.000 0.748 0.000 0.252
#> SRR1643463     2   0.407      0.858 0.000 0.748 0.000 0.252
#> SRR1643464     2   0.407      0.858 0.000 0.748 0.000 0.252
#> SRR1643466     2   0.407      0.858 0.000 0.748 0.000 0.252
#> SRR1643467     2   0.407      0.858 0.000 0.748 0.000 0.252
#> SRR1643468     2   0.454      0.854 0.000 0.720 0.008 0.272
#> SRR1643469     2   0.454      0.854 0.000 0.720 0.008 0.272
#> SRR1643470     2   0.454      0.854 0.000 0.720 0.008 0.272
#> SRR1643471     2   0.454      0.854 0.000 0.720 0.008 0.272
#> SRR1643472     2   0.454      0.854 0.000 0.720 0.008 0.272
#> SRR1643473     2   0.454      0.854 0.000 0.720 0.008 0.272
#> SRR1643474     2   0.454      0.854 0.000 0.720 0.008 0.272
#> SRR1643475     2   0.454      0.854 0.000 0.720 0.008 0.272
#> SRR1643477     2   0.454      0.854 0.000 0.720 0.008 0.272
#> SRR1643478     2   0.454      0.854 0.000 0.720 0.008 0.272
#> SRR1643479     2   0.454      0.854 0.000 0.720 0.008 0.272
#> SRR1643480     2   0.454      0.854 0.000 0.720 0.008 0.272
#> SRR1643481     2   0.463      0.854 0.000 0.732 0.016 0.252
#> SRR1643482     2   0.463      0.854 0.000 0.732 0.016 0.252
#> SRR1643483     2   0.463      0.854 0.000 0.732 0.016 0.252
#> SRR1643484     2   0.463      0.854 0.000 0.732 0.016 0.252
#> SRR1643485     2   0.463      0.854 0.000 0.732 0.016 0.252
#> SRR1643486     2   0.463      0.854 0.000 0.732 0.016 0.252
#> SRR1643487     2   0.463      0.854 0.000 0.732 0.016 0.252
#> SRR1643488     2   0.463      0.854 0.000 0.732 0.016 0.252
#> SRR1643489     2   0.463      0.854 0.000 0.732 0.016 0.252
#> SRR1643490     2   0.463      0.854 0.000 0.732 0.016 0.252
#> SRR1643491     2   0.463      0.854 0.000 0.732 0.016 0.252
#> SRR1643492     2   0.463      0.854 0.000 0.732 0.016 0.252
#> SRR1643493     2   0.463      0.854 0.000 0.732 0.016 0.252
#> SRR1643494     2   0.463      0.854 0.000 0.732 0.016 0.252
#> SRR1643495     2   0.463      0.854 0.000 0.732 0.016 0.252
#> SRR1643496     2   0.463      0.854 0.000 0.732 0.016 0.252
#> SRR1643497     2   0.490      0.850 0.000 0.716 0.024 0.260
#> SRR1643498     2   0.490      0.850 0.000 0.716 0.024 0.260
#> SRR1643499     2   0.490      0.850 0.000 0.716 0.024 0.260
#> SRR1643500     2   0.490      0.850 0.000 0.716 0.024 0.260
#> SRR1643501     2   0.490      0.850 0.000 0.716 0.024 0.260
#> SRR1643502     2   0.490      0.850 0.000 0.716 0.024 0.260
#> SRR1643503     2   0.490      0.850 0.000 0.716 0.024 0.260
#> SRR1643504     2   0.490      0.850 0.000 0.716 0.024 0.260
#> SRR1643505     2   0.496      0.850 0.000 0.716 0.028 0.256
#> SRR1643506     2   0.490      0.850 0.000 0.716 0.024 0.260
#> SRR1643507     2   0.490      0.850 0.000 0.716 0.024 0.260
#> SRR1643508     2   0.490      0.850 0.000 0.716 0.024 0.260
#> SRR1643509     2   0.490      0.850 0.000 0.716 0.024 0.260
#> SRR1643510     2   0.490      0.850 0.000 0.716 0.024 0.260
#> SRR1643511     2   0.490      0.850 0.000 0.716 0.024 0.260
#> SRR1643512     2   0.490      0.850 0.000 0.716 0.024 0.260
#> SRR1643513     2   0.490      0.850 0.000 0.716 0.024 0.260
#> SRR1643531     2   0.345      0.816 0.000 0.868 0.080 0.052
#> SRR1643532     2   0.345      0.816 0.000 0.868 0.080 0.052
#> SRR1643533     2   0.345      0.816 0.000 0.868 0.080 0.052
#> SRR1643534     2   0.345      0.816 0.000 0.868 0.080 0.052
#> SRR1643535     2   0.345      0.816 0.000 0.868 0.080 0.052
#> SRR1643536     2   0.345      0.816 0.000 0.868 0.080 0.052
#> SRR1643537     2   0.345      0.816 0.000 0.868 0.080 0.052
#> SRR1643538     2   0.345      0.816 0.000 0.868 0.080 0.052
#> SRR1643539     2   0.345      0.816 0.000 0.868 0.080 0.052
#> SRR1643540     2   0.345      0.816 0.000 0.868 0.080 0.052
#> SRR1643541     2   0.345      0.816 0.000 0.868 0.080 0.052
#> SRR1643542     2   0.345      0.816 0.000 0.868 0.080 0.052
#> SRR1643543     2   0.345      0.816 0.000 0.868 0.080 0.052
#> SRR1643544     2   0.345      0.816 0.000 0.868 0.080 0.052
#> SRR1643514     2   0.238      0.843 0.000 0.920 0.028 0.052
#> SRR1643515     2   0.238      0.843 0.000 0.920 0.028 0.052
#> SRR1643516     2   0.238      0.843 0.000 0.920 0.028 0.052
#> SRR1643517     2   0.238      0.843 0.000 0.920 0.028 0.052
#> SRR1643518     2   0.238      0.843 0.000 0.920 0.028 0.052
#> SRR1643519     2   0.238      0.843 0.000 0.920 0.028 0.052
#> SRR1643520     2   0.238      0.843 0.000 0.920 0.028 0.052
#> SRR1643521     2   0.238      0.843 0.000 0.920 0.028 0.052
#> SRR1643522     2   0.238      0.843 0.000 0.920 0.028 0.052
#> SRR1643523     2   0.238      0.843 0.000 0.920 0.028 0.052
#> SRR1643524     2   0.238      0.843 0.000 0.920 0.028 0.052
#> SRR1643525     2   0.238      0.843 0.000 0.920 0.028 0.052
#> SRR1643526     2   0.238      0.843 0.000 0.920 0.028 0.052
#> SRR1643527     2   0.238      0.843 0.000 0.920 0.028 0.052
#> SRR1643528     2   0.238      0.843 0.000 0.920 0.028 0.052
#> SRR1643529     2   0.238      0.843 0.000 0.920 0.028 0.052
#> SRR1643530     2   0.238      0.843 0.000 0.920 0.028 0.052
#> SRR1643545     2   0.471      0.858 0.000 0.732 0.020 0.248
#> SRR1643546     2   0.471      0.858 0.000 0.732 0.020 0.248
#> SRR1643547     2   0.471      0.858 0.000 0.732 0.020 0.248
#> SRR1643548     2   0.471      0.858 0.000 0.732 0.020 0.248
#> SRR1643549     2   0.471      0.858 0.000 0.732 0.020 0.248
#> SRR1643550     2   0.471      0.858 0.000 0.732 0.020 0.248
#> SRR1643551     2   0.471      0.858 0.000 0.732 0.020 0.248
#> SRR1643552     2   0.471      0.858 0.000 0.732 0.020 0.248
#> SRR1643553     2   0.471      0.858 0.000 0.732 0.020 0.248
#> SRR1643554     2   0.471      0.858 0.000 0.732 0.020 0.248
#> SRR1643555     2   0.471      0.858 0.000 0.732 0.020 0.248
#> SRR1643556     2   0.471      0.858 0.000 0.732 0.020 0.248
#> SRR1643558     2   0.471      0.858 0.000 0.732 0.020 0.248
#> SRR1643559     2   0.171      0.841 0.000 0.948 0.016 0.036
#> SRR1643560     2   0.171      0.841 0.000 0.948 0.016 0.036
#> SRR1643561     2   0.171      0.841 0.000 0.948 0.016 0.036
#> SRR1643562     2   0.171      0.841 0.000 0.948 0.016 0.036
#> SRR1643563     2   0.171      0.841 0.000 0.948 0.016 0.036
#> SRR1643564     2   0.171      0.841 0.000 0.948 0.016 0.036
#> SRR1643565     2   0.171      0.841 0.000 0.948 0.016 0.036
#> SRR1643566     2   0.171      0.841 0.000 0.948 0.016 0.036
#> SRR1643567     2   0.171      0.841 0.000 0.948 0.016 0.036
#> SRR1643568     2   0.171      0.841 0.000 0.948 0.016 0.036
#> SRR1643569     2   0.171      0.841 0.000 0.948 0.016 0.036
#> SRR1643570     2   0.171      0.841 0.000 0.948 0.016 0.036
#> SRR1643571     2   0.171      0.841 0.000 0.948 0.016 0.036
#> SRR1643572     2   0.171      0.841 0.000 0.948 0.016 0.036

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1    p2    p3    p4 p5
#> SRR1643167     1  0.4271   0.638401 0.784 0.000 0.008 0.068 NA
#> SRR1643168     1  0.4271   0.638401 0.784 0.000 0.008 0.068 NA
#> SRR1643169     1  0.4271   0.638401 0.784 0.000 0.008 0.068 NA
#> SRR1643170     1  0.4271   0.638401 0.784 0.000 0.008 0.068 NA
#> SRR1643171     1  0.4255   0.641888 0.788 0.000 0.012 0.060 NA
#> SRR1643172     1  0.4255   0.641888 0.788 0.000 0.012 0.060 NA
#> SRR1643173     1  0.4255   0.641888 0.788 0.000 0.012 0.060 NA
#> SRR1643174     1  0.4255   0.641888 0.788 0.000 0.012 0.060 NA
#> SRR1643175     1  0.3814   0.672378 0.816 0.000 0.004 0.064 NA
#> SRR1643176     1  0.3814   0.672378 0.816 0.000 0.004 0.064 NA
#> SRR1643177     1  0.3814   0.672378 0.816 0.000 0.004 0.064 NA
#> SRR1643178     1  0.3814   0.672378 0.816 0.000 0.004 0.064 NA
#> SRR1643180     1  0.4380   0.638405 0.780 0.000 0.012 0.068 NA
#> SRR1643181     1  0.4380   0.638405 0.780 0.000 0.012 0.068 NA
#> SRR1643182     1  0.4380   0.638405 0.780 0.000 0.012 0.068 NA
#> SRR1643183     1  0.4380   0.638405 0.780 0.000 0.012 0.068 NA
#> SRR1643184     1  0.4380   0.638405 0.780 0.000 0.012 0.068 NA
#> SRR1643185     1  0.4380   0.638405 0.780 0.000 0.012 0.068 NA
#> SRR1643186     1  0.4380   0.638405 0.780 0.000 0.012 0.068 NA
#> SRR1643187     1  0.4568   0.630423 0.764 0.000 0.008 0.092 NA
#> SRR1643188     1  0.4568   0.630423 0.764 0.000 0.008 0.092 NA
#> SRR1643189     1  0.4568   0.630423 0.764 0.000 0.008 0.092 NA
#> SRR1643190     1  0.4568   0.630423 0.764 0.000 0.008 0.092 NA
#> SRR1643191     1  0.4103   0.644180 0.796 0.000 0.008 0.060 NA
#> SRR1643192     1  0.4103   0.644180 0.796 0.000 0.008 0.060 NA
#> SRR1643193     1  0.4557   0.627129 0.764 0.000 0.008 0.088 NA
#> SRR1643194     1  0.4557   0.627129 0.764 0.000 0.008 0.088 NA
#> SRR1643195     4  0.6495   0.353946 0.420 0.000 0.008 0.428 NA
#> SRR1643196     4  0.6495   0.353946 0.420 0.000 0.008 0.428 NA
#> SRR1643197     1  0.4014   0.649587 0.804 0.000 0.008 0.060 NA
#> SRR1643198     1  0.4014   0.649587 0.804 0.000 0.008 0.060 NA
#> SRR1643199     1  0.4271   0.638401 0.784 0.000 0.008 0.068 NA
#> SRR1643200     1  0.4271   0.638401 0.784 0.000 0.008 0.068 NA
#> SRR1643201     1  0.4803   0.609896 0.744 0.000 0.008 0.104 NA
#> SRR1643202     1  0.4803   0.609896 0.744 0.000 0.008 0.104 NA
#> SRR1643203     1  0.4360   0.638855 0.780 0.000 0.008 0.080 NA
#> SRR1643204     1  0.4360   0.638855 0.780 0.000 0.008 0.080 NA
#> SRR1643205     3  0.2228   0.980477 0.092 0.000 0.900 0.004 NA
#> SRR1643206     3  0.2228   0.980477 0.092 0.000 0.900 0.004 NA
#> SRR1643207     3  0.2228   0.980477 0.092 0.000 0.900 0.004 NA
#> SRR1643208     3  0.2228   0.980477 0.092 0.000 0.900 0.004 NA
#> SRR1643209     3  0.3163   0.977258 0.092 0.000 0.864 0.012 NA
#> SRR1643210     3  0.3163   0.977258 0.092 0.000 0.864 0.012 NA
#> SRR1643211     3  0.2068   0.980905 0.092 0.000 0.904 0.000 NA
#> SRR1643212     3  0.2068   0.980905 0.092 0.000 0.904 0.000 NA
#> SRR1643213     3  0.2068   0.980905 0.092 0.000 0.904 0.000 NA
#> SRR1643214     3  0.2068   0.980905 0.092 0.000 0.904 0.000 NA
#> SRR1643215     3  0.3441   0.975071 0.092 0.000 0.852 0.020 NA
#> SRR1643216     3  0.3441   0.975071 0.092 0.000 0.852 0.020 NA
#> SRR1643217     3  0.3441   0.975071 0.092 0.000 0.852 0.020 NA
#> SRR1643218     3  0.3441   0.975071 0.092 0.000 0.852 0.020 NA
#> SRR1643219     3  0.3441   0.975071 0.092 0.000 0.852 0.020 NA
#> SRR1643220     3  0.3441   0.975071 0.092 0.000 0.852 0.020 NA
#> SRR1643221     3  0.2464   0.980299 0.092 0.000 0.892 0.012 NA
#> SRR1643222     3  0.2464   0.980299 0.092 0.000 0.892 0.012 NA
#> SRR1643223     3  0.2701   0.979702 0.092 0.000 0.884 0.012 NA
#> SRR1643224     3  0.2701   0.979702 0.092 0.000 0.884 0.012 NA
#> SRR1643225     3  0.2701   0.979702 0.092 0.000 0.884 0.012 NA
#> SRR1643226     3  0.2701   0.979702 0.092 0.000 0.884 0.012 NA
#> SRR1643227     3  0.2589   0.980095 0.092 0.000 0.888 0.012 NA
#> SRR1643228     3  0.2589   0.980095 0.092 0.000 0.888 0.012 NA
#> SRR1643229     3  0.2589   0.980095 0.092 0.000 0.888 0.012 NA
#> SRR1643230     3  0.2589   0.980095 0.092 0.000 0.888 0.012 NA
#> SRR1643231     3  0.3182   0.978319 0.092 0.000 0.864 0.028 NA
#> SRR1643232     3  0.2228   0.980477 0.092 0.000 0.900 0.004 NA
#> SRR1643233     3  0.3609   0.973648 0.092 0.000 0.844 0.024 NA
#> SRR1643234     3  0.3609   0.973648 0.092 0.000 0.844 0.024 NA
#> SRR1643235     3  0.2352   0.980471 0.092 0.000 0.896 0.008 NA
#> SRR1643236     3  0.2352   0.980492 0.092 0.000 0.896 0.004 NA
#> SRR1643237     3  0.2352   0.980492 0.092 0.000 0.896 0.004 NA
#> SRR1643238     3  0.2568   0.980149 0.092 0.000 0.888 0.004 NA
#> SRR1643239     3  0.2568   0.980149 0.092 0.000 0.888 0.004 NA
#> SRR1643240     3  0.2568   0.980149 0.092 0.000 0.888 0.004 NA
#> SRR1643241     3  0.2568   0.980149 0.092 0.000 0.888 0.004 NA
#> SRR1643242     3  0.3770   0.970726 0.092 0.000 0.836 0.028 NA
#> SRR1643243     3  0.3423   0.975533 0.092 0.000 0.852 0.016 NA
#> SRR1643245     3  0.3423   0.975533 0.092 0.000 0.852 0.016 NA
#> SRR1643246     3  0.3423   0.975533 0.092 0.000 0.852 0.016 NA
#> SRR1643247     3  0.3423   0.975533 0.092 0.000 0.852 0.016 NA
#> SRR1643248     3  0.2789   0.980410 0.092 0.000 0.880 0.020 NA
#> SRR1643249     3  0.6308   0.804205 0.144 0.000 0.648 0.064 NA
#> SRR1643250     4  0.4637   0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643251     4  0.4637   0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643252     4  0.4637   0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643253     4  0.4637   0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643254     4  0.4637   0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643255     4  0.4637   0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643256     4  0.4637   0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643257     4  0.4637   0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643258     4  0.4637   0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643259     4  0.4637   0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643260     4  0.4637   0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643261     4  0.4637   0.828616 0.452 0.000 0.000 0.536 NA
#> SRR1643262     4  0.4622   0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643263     4  0.4622   0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643264     4  0.4622   0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643266     4  0.4622   0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643267     4  0.4622   0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643268     4  0.4622   0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643269     4  0.4622   0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643270     4  0.4622   0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643271     4  0.4622   0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643272     4  0.4622   0.834495 0.440 0.000 0.000 0.548 NA
#> SRR1643273     1  0.5179   0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643274     1  0.5179   0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643275     1  0.5179   0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643276     1  0.5179   0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643277     1  0.5179   0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643278     1  0.5179   0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643279     1  0.5179   0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643280     1  0.5179   0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643281     1  0.5179   0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643282     1  0.5179   0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643283     1  0.5179   0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643284     1  0.5179   0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643285     1  0.5179   0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643286     1  0.5179   0.155919 0.640 0.000 0.000 0.288 NA
#> SRR1643287     4  0.5700   0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643288     4  0.5700   0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643289     4  0.5700   0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643290     4  0.5700   0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643291     4  0.5700   0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643292     4  0.5700   0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643293     4  0.5700   0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643294     4  0.5700   0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643295     4  0.5700   0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643296     4  0.5700   0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643297     4  0.5700   0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643298     4  0.5700   0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643299     4  0.5700   0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643300     4  0.5700   0.714634 0.380 0.000 0.000 0.532 NA
#> SRR1643301     1  0.4465   0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643302     1  0.4465   0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643303     1  0.4465   0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643304     1  0.4465   0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643305     1  0.4465   0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643306     1  0.4465   0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643307     1  0.4465   0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643308     1  0.4465   0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643309     1  0.4465   0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643310     1  0.4465   0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643311     1  0.4465   0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643312     1  0.4465   0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643313     1  0.4465   0.000182 0.672 0.000 0.000 0.304 NA
#> SRR1643314     1  0.2653   0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643315     1  0.2653   0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643316     1  0.2653   0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643317     1  0.2653   0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643318     1  0.2653   0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643319     1  0.2597   0.638401 0.884 0.000 0.000 0.092 NA
#> SRR1643320     1  0.2653   0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643321     1  0.2653   0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643322     1  0.2653   0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643323     1  0.2653   0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643324     1  0.2653   0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643325     1  0.2653   0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643326     1  0.2653   0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643327     1  0.2653   0.634723 0.880 0.000 0.000 0.096 NA
#> SRR1643328     1  0.1243   0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643329     1  0.1243   0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643330     1  0.1243   0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643331     1  0.1243   0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643332     1  0.1243   0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643333     1  0.1243   0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643334     1  0.1243   0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643335     1  0.1243   0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643336     1  0.1243   0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643337     1  0.1243   0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643338     1  0.1243   0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643339     1  0.1243   0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643340     1  0.1243   0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643341     1  0.1243   0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643342     1  0.1243   0.709723 0.960 0.000 0.008 0.004 NA
#> SRR1643343     1  0.4734   0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643344     1  0.4734   0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643345     1  0.4734   0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643346     1  0.4734   0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643347     1  0.4734   0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643348     1  0.4734   0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643349     1  0.4734   0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643350     1  0.4734   0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643351     1  0.4734   0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643352     1  0.4734   0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643353     1  0.4734   0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643354     1  0.4734   0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643355     1  0.4734   0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643356     1  0.4734   0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643357     1  0.4734   0.528572 0.728 0.000 0.000 0.176 NA
#> SRR1643358     4  0.4420   0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643359     4  0.4420   0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643360     4  0.4420   0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643361     4  0.4420   0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643362     4  0.4420   0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643363     4  0.4420   0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643364     4  0.4420   0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643365     4  0.4420   0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643366     4  0.4420   0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643367     4  0.4420   0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643368     4  0.4420   0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643369     4  0.4420   0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643370     4  0.4420   0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643371     4  0.4420   0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643372     4  0.4420   0.836049 0.448 0.000 0.000 0.548 NA
#> SRR1643373     4  0.4528   0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643374     4  0.4528   0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643375     4  0.4528   0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643376     4  0.4528   0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643377     4  0.4528   0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643378     4  0.4528   0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643379     4  0.4528   0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643380     4  0.4528   0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643381     4  0.4528   0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643382     4  0.4528   0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643383     4  0.4528   0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643384     4  0.4528   0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643385     4  0.4528   0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643386     4  0.4528   0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643387     4  0.4528   0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643388     4  0.4528   0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643389     4  0.4528   0.837005 0.444 0.000 0.000 0.548 NA
#> SRR1643390     1  0.1369   0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643391     1  0.1369   0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643392     1  0.1369   0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643393     1  0.1369   0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643394     1  0.1369   0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643395     1  0.1369   0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643396     1  0.1369   0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643397     1  0.1369   0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643398     1  0.1369   0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643399     1  0.1369   0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643400     1  0.1369   0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643401     1  0.1369   0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643402     1  0.1369   0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643403     1  0.1369   0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643404     1  0.1369   0.705630 0.956 0.000 0.008 0.008 NA
#> SRR1643405     1  0.2278   0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643406     1  0.2278   0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643407     1  0.2278   0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643408     1  0.2278   0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643409     1  0.2278   0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643410     1  0.2278   0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643411     1  0.2278   0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643412     1  0.2278   0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643413     1  0.2278   0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643414     1  0.2278   0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643415     1  0.2278   0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643416     1  0.2278   0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643417     1  0.2278   0.695372 0.916 0.000 0.008 0.032 NA
#> SRR1643418     4  0.5322   0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643419     4  0.5322   0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643420     4  0.5322   0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643421     4  0.5322   0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643422     4  0.5322   0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643423     4  0.5322   0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643424     4  0.5322   0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643425     4  0.5322   0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643426     4  0.5322   0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643427     4  0.5322   0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643428     4  0.5322   0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643429     4  0.5322   0.751097 0.324 0.000 0.004 0.612 NA
#> SRR1643430     4  0.5053   0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643431     4  0.5053   0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643432     4  0.5053   0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643433     4  0.5053   0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643434     4  0.5053   0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643435     4  0.5053   0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643436     4  0.5053   0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643437     4  0.5053   0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643438     4  0.5053   0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643439     4  0.5053   0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643440     4  0.5053   0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643441     4  0.5053   0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643442     4  0.5053   0.751043 0.324 0.000 0.000 0.624 NA
#> SRR1643443     2  0.5473   0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643444     2  0.5473   0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643445     2  0.5473   0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643446     2  0.5473   0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643447     2  0.5473   0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643448     2  0.5473   0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643449     2  0.5473   0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643450     2  0.5473   0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643451     2  0.5473   0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643452     2  0.5473   0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643453     2  0.5473   0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643454     2  0.5473   0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643455     2  0.5473   0.757972 0.000 0.548 0.008 0.048 NA
#> SRR1643456     2  0.0613   0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643457     2  0.0613   0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643458     2  0.0613   0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643459     2  0.0613   0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643460     2  0.0613   0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643461     2  0.0613   0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643462     2  0.0613   0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643463     2  0.0613   0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643464     2  0.0613   0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643466     2  0.0613   0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643467     2  0.0613   0.829513 0.000 0.984 0.004 0.008 NA
#> SRR1643468     2  0.1948   0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643469     2  0.1948   0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643470     2  0.1948   0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643471     2  0.1948   0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643472     2  0.1948   0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643473     2  0.1948   0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643474     2  0.1948   0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643475     2  0.1948   0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643477     2  0.1948   0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643478     2  0.1948   0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643479     2  0.1948   0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643480     2  0.1948   0.820509 0.000 0.932 0.008 0.024 NA
#> SRR1643481     2  0.1356   0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643482     2  0.1356   0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643483     2  0.1356   0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643484     2  0.1356   0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643485     2  0.1356   0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643486     2  0.1356   0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643487     2  0.1356   0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643488     2  0.1356   0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643489     2  0.1356   0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643490     2  0.1356   0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643491     2  0.1356   0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643492     2  0.1356   0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643493     2  0.1356   0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643494     2  0.1356   0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643495     2  0.1356   0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643496     2  0.1356   0.824872 0.000 0.956 0.004 0.012 NA
#> SRR1643497     2  0.4538   0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643498     2  0.4538   0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643499     2  0.4538   0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643500     2  0.4538   0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643501     2  0.4538   0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643502     2  0.4538   0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643503     2  0.4538   0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643504     2  0.4538   0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643505     2  0.4844   0.789322 0.000 0.752 0.024 0.072 NA
#> SRR1643506     2  0.4538   0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643507     2  0.4538   0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643508     2  0.4538   0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643509     2  0.4538   0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643510     2  0.4538   0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643511     2  0.4538   0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643512     2  0.4538   0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643513     2  0.4538   0.797469 0.000 0.776 0.024 0.060 NA
#> SRR1643531     2  0.4480   0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643532     2  0.4480   0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643533     2  0.4480   0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643534     2  0.4480   0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643535     2  0.4480   0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643536     2  0.4480   0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643537     2  0.4480   0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643538     2  0.4480   0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643539     2  0.4480   0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643540     2  0.4480   0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643541     2  0.4480   0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643542     2  0.4480   0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643543     2  0.4480   0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643544     2  0.4480   0.774313 0.000 0.592 0.004 0.004 NA
#> SRR1643514     2  0.5034   0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643515     2  0.5034   0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643516     2  0.5034   0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643517     2  0.5034   0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643518     2  0.5034   0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643519     2  0.5034   0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643520     2  0.5034   0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643521     2  0.5034   0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643522     2  0.5034   0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643523     2  0.5034   0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643524     2  0.5034   0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643525     2  0.5034   0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643526     2  0.5034   0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643527     2  0.5034   0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643528     2  0.5034   0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643529     2  0.5034   0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643530     2  0.5034   0.804019 0.000 0.684 0.028 0.028 NA
#> SRR1643545     2  0.2363   0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643546     2  0.2363   0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643547     2  0.2363   0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643548     2  0.2363   0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643549     2  0.2363   0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643550     2  0.2363   0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643551     2  0.2363   0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643552     2  0.2363   0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643553     2  0.2363   0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643554     2  0.2363   0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643555     2  0.2363   0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643556     2  0.2363   0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643558     2  0.2363   0.825623 0.000 0.912 0.012 0.024 NA
#> SRR1643559     2  0.4528   0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643560     2  0.4528   0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643561     2  0.4528   0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643562     2  0.4528   0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643563     2  0.4528   0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643564     2  0.4528   0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643565     2  0.4528   0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643566     2  0.4528   0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643567     2  0.4528   0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643568     2  0.4528   0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643569     2  0.4528   0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643570     2  0.4528   0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643571     2  0.4528   0.803611 0.000 0.680 0.012 0.012 NA
#> SRR1643572     2  0.4528   0.803611 0.000 0.680 0.012 0.012 NA

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2    p3    p4    p5 p6
#> SRR1643167     1   0.575     0.6262 0.504 0.000 0.000 0.208 0.000 NA
#> SRR1643168     1   0.575     0.6262 0.504 0.000 0.000 0.208 0.000 NA
#> SRR1643169     1   0.575     0.6262 0.504 0.000 0.000 0.208 0.000 NA
#> SRR1643170     1   0.575     0.6262 0.504 0.000 0.000 0.208 0.000 NA
#> SRR1643171     1   0.588     0.6266 0.500 0.000 0.000 0.208 0.004 NA
#> SRR1643172     1   0.588     0.6266 0.500 0.000 0.000 0.208 0.004 NA
#> SRR1643173     1   0.588     0.6266 0.500 0.000 0.000 0.208 0.004 NA
#> SRR1643174     1   0.588     0.6266 0.500 0.000 0.000 0.208 0.004 NA
#> SRR1643175     1   0.633     0.6335 0.480 0.000 0.004 0.256 0.016 NA
#> SRR1643176     1   0.633     0.6335 0.480 0.000 0.004 0.256 0.016 NA
#> SRR1643177     1   0.633     0.6335 0.480 0.000 0.004 0.256 0.016 NA
#> SRR1643178     1   0.633     0.6335 0.480 0.000 0.004 0.256 0.016 NA
#> SRR1643180     1   0.587     0.6264 0.504 0.000 0.000 0.208 0.004 NA
#> SRR1643181     1   0.587     0.6264 0.504 0.000 0.000 0.208 0.004 NA
#> SRR1643182     1   0.587     0.6264 0.504 0.000 0.000 0.208 0.004 NA
#> SRR1643183     1   0.587     0.6264 0.504 0.000 0.000 0.208 0.004 NA
#> SRR1643184     1   0.587     0.6264 0.504 0.000 0.000 0.208 0.004 NA
#> SRR1643185     1   0.587     0.6264 0.504 0.000 0.000 0.208 0.004 NA
#> SRR1643186     1   0.587     0.6264 0.504 0.000 0.000 0.208 0.004 NA
#> SRR1643187     1   0.611     0.6258 0.492 0.000 0.004 0.208 0.008 NA
#> SRR1643188     1   0.611     0.6258 0.492 0.000 0.004 0.208 0.008 NA
#> SRR1643189     1   0.611     0.6258 0.492 0.000 0.004 0.208 0.008 NA
#> SRR1643190     1   0.611     0.6258 0.492 0.000 0.004 0.208 0.008 NA
#> SRR1643191     1   0.574     0.6296 0.508 0.000 0.000 0.208 0.000 NA
#> SRR1643192     1   0.574     0.6296 0.508 0.000 0.000 0.208 0.000 NA
#> SRR1643193     1   0.575     0.6262 0.504 0.000 0.000 0.208 0.000 NA
#> SRR1643194     1   0.575     0.6262 0.504 0.000 0.000 0.208 0.000 NA
#> SRR1643195     4   0.571     0.1422 0.172 0.000 0.000 0.552 0.008 NA
#> SRR1643196     4   0.571     0.1422 0.172 0.000 0.000 0.552 0.008 NA
#> SRR1643197     1   0.597     0.6313 0.508 0.000 0.004 0.208 0.004 NA
#> SRR1643198     1   0.597     0.6313 0.508 0.000 0.004 0.208 0.004 NA
#> SRR1643199     1   0.575     0.6262 0.504 0.000 0.000 0.208 0.000 NA
#> SRR1643200     1   0.575     0.6262 0.504 0.000 0.000 0.208 0.000 NA
#> SRR1643201     1   0.589     0.6230 0.500 0.000 0.000 0.212 0.004 NA
#> SRR1643202     1   0.589     0.6230 0.500 0.000 0.000 0.212 0.004 NA
#> SRR1643203     1   0.610     0.6263 0.496 0.000 0.004 0.208 0.008 NA
#> SRR1643204     1   0.610     0.6263 0.496 0.000 0.004 0.208 0.008 NA
#> SRR1643205     3   0.115     0.9643 0.004 0.000 0.956 0.036 0.004 NA
#> SRR1643206     3   0.115     0.9643 0.004 0.000 0.956 0.036 0.004 NA
#> SRR1643207     3   0.115     0.9643 0.004 0.000 0.956 0.036 0.004 NA
#> SRR1643208     3   0.115     0.9643 0.004 0.000 0.956 0.036 0.004 NA
#> SRR1643209     3   0.295     0.9542 0.012 0.000 0.876 0.036 0.020 NA
#> SRR1643210     3   0.295     0.9542 0.012 0.000 0.876 0.036 0.020 NA
#> SRR1643211     3   0.115     0.9650 0.004 0.000 0.956 0.036 0.004 NA
#> SRR1643212     3   0.115     0.9650 0.004 0.000 0.956 0.036 0.004 NA
#> SRR1643213     3   0.115     0.9650 0.004 0.000 0.956 0.036 0.004 NA
#> SRR1643214     3   0.115     0.9650 0.004 0.000 0.956 0.036 0.004 NA
#> SRR1643215     3   0.316     0.9513 0.016 0.000 0.864 0.036 0.020 NA
#> SRR1643216     3   0.316     0.9513 0.016 0.000 0.864 0.036 0.020 NA
#> SRR1643217     3   0.316     0.9513 0.016 0.000 0.864 0.036 0.020 NA
#> SRR1643218     3   0.316     0.9513 0.016 0.000 0.864 0.036 0.020 NA
#> SRR1643219     3   0.316     0.9513 0.016 0.000 0.864 0.036 0.020 NA
#> SRR1643220     3   0.316     0.9513 0.016 0.000 0.864 0.036 0.020 NA
#> SRR1643221     3   0.127     0.9643 0.004 0.000 0.952 0.036 0.008 NA
#> SRR1643222     3   0.127     0.9643 0.004 0.000 0.952 0.036 0.008 NA
#> SRR1643223     3   0.183     0.9625 0.008 0.000 0.932 0.036 0.008 NA
#> SRR1643224     3   0.183     0.9625 0.008 0.000 0.932 0.036 0.008 NA
#> SRR1643225     3   0.183     0.9625 0.008 0.000 0.932 0.036 0.008 NA
#> SRR1643226     3   0.183     0.9625 0.008 0.000 0.932 0.036 0.008 NA
#> SRR1643227     3   0.183     0.9628 0.008 0.000 0.932 0.036 0.008 NA
#> SRR1643228     3   0.183     0.9628 0.008 0.000 0.932 0.036 0.008 NA
#> SRR1643229     3   0.164     0.9638 0.008 0.000 0.940 0.036 0.008 NA
#> SRR1643230     3   0.141     0.9642 0.004 0.000 0.948 0.036 0.008 NA
#> SRR1643231     3   0.231     0.9594 0.012 0.000 0.912 0.036 0.020 NA
#> SRR1643232     3   0.127     0.9642 0.004 0.000 0.952 0.036 0.008 NA
#> SRR1643233     3   0.341     0.9477 0.016 0.000 0.848 0.036 0.024 NA
#> SRR1643234     3   0.341     0.9477 0.016 0.000 0.848 0.036 0.024 NA
#> SRR1643235     3   0.127     0.9642 0.004 0.000 0.952 0.036 0.008 NA
#> SRR1643236     3   0.127     0.9642 0.004 0.000 0.952 0.036 0.008 NA
#> SRR1643237     3   0.127     0.9642 0.004 0.000 0.952 0.036 0.008 NA
#> SRR1643238     3   0.200     0.9632 0.004 0.000 0.924 0.036 0.016 NA
#> SRR1643239     3   0.200     0.9632 0.004 0.000 0.924 0.036 0.016 NA
#> SRR1643240     3   0.200     0.9632 0.004 0.000 0.924 0.036 0.016 NA
#> SRR1643241     3   0.200     0.9632 0.004 0.000 0.924 0.036 0.016 NA
#> SRR1643242     3   0.383     0.9397 0.020 0.000 0.820 0.036 0.028 NA
#> SRR1643243     3   0.346     0.9482 0.016 0.000 0.844 0.036 0.024 NA
#> SRR1643245     3   0.346     0.9482 0.016 0.000 0.844 0.036 0.024 NA
#> SRR1643246     3   0.346     0.9482 0.016 0.000 0.844 0.036 0.024 NA
#> SRR1643247     3   0.346     0.9482 0.016 0.000 0.844 0.036 0.024 NA
#> SRR1643248     3   0.153     0.9640 0.008 0.000 0.944 0.036 0.008 NA
#> SRR1643249     3   0.655     0.6247 0.148 0.000 0.540 0.032 0.028 NA
#> SRR1643250     4   0.145     0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643251     4   0.145     0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643252     4   0.145     0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643253     4   0.145     0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643254     4   0.145     0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643255     4   0.145     0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643256     4   0.145     0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643257     4   0.145     0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643258     4   0.145     0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643259     4   0.145     0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643260     4   0.145     0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643261     4   0.145     0.7402 0.020 0.000 0.000 0.948 0.020 NA
#> SRR1643262     4   0.108     0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643263     4   0.108     0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643264     4   0.108     0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643266     4   0.108     0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643267     4   0.108     0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643268     4   0.108     0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643269     4   0.108     0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643270     4   0.108     0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643271     4   0.108     0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643272     4   0.108     0.7450 0.008 0.000 0.000 0.964 0.016 NA
#> SRR1643273     4   0.600     0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643274     4   0.600     0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643275     4   0.600     0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643276     4   0.600     0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643277     4   0.600     0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643278     4   0.600     0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643279     4   0.600     0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643280     4   0.600     0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643281     4   0.600     0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643282     4   0.600     0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643283     4   0.600     0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643284     4   0.600     0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643285     4   0.600     0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643286     4   0.600     0.2303 0.276 0.000 0.000 0.568 0.080 NA
#> SRR1643287     4   0.533     0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643288     4   0.533     0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643289     4   0.533     0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643290     4   0.533     0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643291     4   0.533     0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643292     4   0.533     0.5982 0.096 0.000 0.000 0.692 0.104 NA
#> SRR1643293     4   0.533     0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643294     4   0.533     0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643295     4   0.533     0.5982 0.096 0.000 0.000 0.692 0.104 NA
#> SRR1643296     4   0.533     0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643297     4   0.533     0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643298     4   0.533     0.5982 0.096 0.000 0.000 0.692 0.104 NA
#> SRR1643299     4   0.533     0.5981 0.096 0.000 0.000 0.692 0.100 NA
#> SRR1643300     4   0.533     0.5982 0.096 0.000 0.000 0.692 0.104 NA
#> SRR1643301     4   0.464     0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643302     4   0.464     0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643303     4   0.464     0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643304     4   0.464     0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643305     4   0.464     0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643306     4   0.464     0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643307     4   0.464     0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643308     4   0.464     0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643309     4   0.464     0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643310     4   0.464     0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643311     4   0.464     0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643312     4   0.464     0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643313     4   0.464     0.3887 0.256 0.000 0.000 0.680 0.036 NA
#> SRR1643314     1   0.491     0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643315     1   0.491     0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643316     1   0.491     0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643317     1   0.491     0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643318     1   0.491     0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643319     1   0.491     0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643320     1   0.491     0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643321     1   0.491     0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643322     1   0.491     0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643323     1   0.491     0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643324     1   0.491     0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643325     1   0.491     0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643326     1   0.491     0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643327     1   0.491     0.5990 0.564 0.000 0.000 0.384 0.028 NA
#> SRR1643328     1   0.384     0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643329     1   0.384     0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643330     1   0.384     0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643331     1   0.384     0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643332     1   0.384     0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643333     1   0.384     0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643334     1   0.384     0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643335     1   0.384     0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643336     1   0.384     0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643337     1   0.384     0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643338     1   0.384     0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643339     1   0.384     0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643340     1   0.384     0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643341     1   0.384     0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643342     1   0.384     0.7147 0.716 0.000 0.004 0.264 0.012 NA
#> SRR1643343     1   0.659     0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643344     1   0.659     0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643345     1   0.659     0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643346     1   0.659     0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643347     1   0.659     0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643348     1   0.659     0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643349     1   0.659     0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643350     1   0.659     0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643351     1   0.659     0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643352     1   0.659     0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643353     1   0.659     0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643354     1   0.659     0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643355     1   0.659     0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643356     1   0.659     0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643357     1   0.659     0.3982 0.436 0.000 0.004 0.372 0.132 NA
#> SRR1643358     4   0.164     0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643359     4   0.164     0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643360     4   0.164     0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643361     4   0.164     0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643362     4   0.164     0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643363     4   0.164     0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643364     4   0.164     0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643365     4   0.164     0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643366     4   0.164     0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643367     4   0.164     0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643368     4   0.164     0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643369     4   0.164     0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643370     4   0.164     0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643371     4   0.164     0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643372     4   0.164     0.7499 0.004 0.000 0.000 0.936 0.032 NA
#> SRR1643373     4   0.172     0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643374     4   0.172     0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643375     4   0.172     0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643376     4   0.172     0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643377     4   0.172     0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643378     4   0.172     0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643379     4   0.172     0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643380     4   0.172     0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643381     4   0.172     0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643382     4   0.172     0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643383     4   0.172     0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643384     4   0.172     0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643385     4   0.172     0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643386     4   0.172     0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643387     4   0.172     0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643388     4   0.172     0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643389     4   0.172     0.7492 0.004 0.000 0.000 0.932 0.036 NA
#> SRR1643390     1   0.434     0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643391     1   0.434     0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643392     1   0.434     0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643393     1   0.434     0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643394     1   0.434     0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643395     1   0.434     0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643396     1   0.434     0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643397     1   0.434     0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643398     1   0.434     0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643399     1   0.434     0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643400     1   0.434     0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643401     1   0.434     0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643402     1   0.434     0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643403     1   0.434     0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643404     1   0.434     0.7099 0.696 0.000 0.004 0.260 0.028 NA
#> SRR1643405     1   0.468     0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643406     1   0.468     0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643407     1   0.468     0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643408     1   0.468     0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643409     1   0.468     0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643410     1   0.468     0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643411     1   0.468     0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643412     1   0.468     0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643413     1   0.468     0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643414     1   0.468     0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643415     1   0.468     0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643416     1   0.468     0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643417     1   0.468     0.7009 0.680 0.000 0.004 0.252 0.052 NA
#> SRR1643418     4   0.345     0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643419     4   0.345     0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643420     4   0.345     0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643421     4   0.345     0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643422     4   0.345     0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643423     4   0.345     0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643424     4   0.345     0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643425     4   0.345     0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643426     4   0.345     0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643427     4   0.345     0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643428     4   0.345     0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643429     4   0.345     0.6892 0.004 0.000 0.000 0.788 0.028 NA
#> SRR1643430     4   0.325     0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643431     4   0.325     0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643432     4   0.325     0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643433     4   0.325     0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643434     4   0.325     0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643435     4   0.325     0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643436     4   0.325     0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643437     4   0.325     0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643438     4   0.325     0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643439     4   0.325     0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643440     4   0.325     0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643441     4   0.325     0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643442     4   0.325     0.6891 0.000 0.000 0.000 0.788 0.020 NA
#> SRR1643443     5   0.491     1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643444     5   0.491     1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643445     5   0.491     1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643446     5   0.491     1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643447     5   0.491     1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643448     5   0.491     1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643449     5   0.491     1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643450     5   0.491     1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643451     5   0.491     1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643452     5   0.491     1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643453     5   0.491     1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643454     5   0.491     1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643455     5   0.491     1.0000 0.004 0.424 0.000 0.000 0.520 NA
#> SRR1643456     2   0.144     0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643457     2   0.144     0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643458     2   0.144     0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643459     2   0.144     0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643460     2   0.144     0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643461     2   0.144     0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643462     2   0.144     0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643463     2   0.144     0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643464     2   0.144     0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643466     2   0.144     0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643467     2   0.144     0.4941 0.016 0.952 0.008 0.000 0.012 NA
#> SRR1643468     2   0.273     0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643469     2   0.273     0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643470     2   0.273     0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643471     2   0.273     0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643472     2   0.273     0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643473     2   0.273     0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643474     2   0.273     0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643475     2   0.273     0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643477     2   0.273     0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643478     2   0.273     0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643479     2   0.273     0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643480     2   0.273     0.4648 0.012 0.884 0.008 0.000 0.036 NA
#> SRR1643481     2   0.165     0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643482     2   0.165     0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643483     2   0.165     0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643484     2   0.165     0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643485     2   0.165     0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643486     2   0.165     0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643487     2   0.165     0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643488     2   0.165     0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643489     2   0.165     0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643490     2   0.165     0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643491     2   0.165     0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643492     2   0.165     0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643493     2   0.165     0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643494     2   0.165     0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643495     2   0.165     0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643496     2   0.165     0.4948 0.016 0.940 0.004 0.000 0.008 NA
#> SRR1643497     2   0.466     0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643498     2   0.466     0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643499     2   0.466     0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643500     2   0.466     0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643501     2   0.466     0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643502     2   0.466     0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643503     2   0.466     0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643504     2   0.466     0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643505     2   0.504     0.2207 0.004 0.684 0.012 0.000 0.164 NA
#> SRR1643506     2   0.466     0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643507     2   0.466     0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643508     2   0.466     0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643509     2   0.466     0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643510     2   0.466     0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643511     2   0.466     0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643512     2   0.466     0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643513     2   0.466     0.2434 0.004 0.700 0.000 0.000 0.164 NA
#> SRR1643531     2   0.476    -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643532     2   0.476    -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643533     2   0.476    -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643534     2   0.476    -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643535     2   0.476    -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643536     2   0.476    -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643537     2   0.476    -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643538     2   0.476    -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643539     2   0.476    -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643540     2   0.476    -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643541     2   0.476    -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643542     2   0.476    -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643543     2   0.476    -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643544     2   0.476    -0.4807 0.024 0.504 0.004 0.000 0.460 NA
#> SRR1643514     2   0.485    -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643515     2   0.485    -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643516     2   0.485    -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643517     2   0.485    -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643518     2   0.485    -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643519     2   0.485    -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643520     2   0.485    -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643521     2   0.485    -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643522     2   0.485    -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643523     2   0.485    -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643524     2   0.485    -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643525     2   0.485    -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643526     2   0.485    -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643527     2   0.485    -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643528     2   0.485    -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643529     2   0.485    -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643530     2   0.485    -0.0434 0.012 0.604 0.000 0.000 0.336 NA
#> SRR1643545     2   0.372     0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643546     2   0.372     0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643547     2   0.372     0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643548     2   0.372     0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643549     2   0.372     0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643550     2   0.372     0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643551     2   0.372     0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643552     2   0.372     0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643553     2   0.372     0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643554     2   0.372     0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643555     2   0.372     0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643556     2   0.372     0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643558     2   0.372     0.4350 0.040 0.828 0.008 0.000 0.072 NA
#> SRR1643559     2   0.486    -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643560     2   0.486    -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643561     2   0.486    -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643562     2   0.486    -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643563     2   0.486    -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643564     2   0.486    -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643565     2   0.486    -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643566     2   0.486    -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643567     2   0.486    -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643568     2   0.486    -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643569     2   0.486    -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643570     2   0.486    -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643571     2   0.486    -0.1249 0.020 0.584 0.000 0.000 0.364 NA
#> SRR1643572     2   0.486    -0.1249 0.020 0.584 0.000 0.000 0.364 NA

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-MAD-kmeans-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-MAD-kmeans-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-MAD-kmeans-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-MAD-kmeans-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-MAD-kmeans-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-MAD-kmeans-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-MAD-kmeans-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-MAD-kmeans-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-MAD-kmeans-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-MAD-kmeans-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-MAD-kmeans-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-MAD-kmeans-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-MAD-kmeans-get-signatures-3

get_signatures(res, k = 5)

plot of chunk tab-MAD-kmeans-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-MAD-kmeans-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-MAD-kmeans-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-MAD-kmeans-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-MAD-kmeans-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)

plot of chunk tab-MAD-kmeans-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-MAD-kmeans-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk MAD-kmeans-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-MAD-kmeans-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-MAD-kmeans-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-MAD-kmeans-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-MAD-kmeans-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-MAD-kmeans-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk MAD-kmeans-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


MAD:skmeans**

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["MAD", "skmeans"]
# you can also extract it by
# res = res_list["MAD:skmeans"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'MAD' method.
#>   Subgroups are detected by 'skmeans' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 4.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk MAD-skmeans-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk MAD-skmeans-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000         0.4350 0.566   0.566
#> 3 3 0.821           0.952       0.963         0.3293 0.874   0.777
#> 4 4 0.951           0.926       0.958         0.2429 0.836   0.627
#> 5 5 0.849           0.707       0.822         0.0611 0.951   0.823
#> 6 6 0.857           0.753       0.806         0.0369 0.942   0.768

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 4
#> attr(,"optional")
#> [1] 2

There is also optional best \(k\) = 2 that is worth to check.

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1 p2    p3
#> SRR1643167     1   0.394      0.890 0.844  0 0.156
#> SRR1643168     1   0.394      0.890 0.844  0 0.156
#> SRR1643169     1   0.394      0.890 0.844  0 0.156
#> SRR1643170     1   0.394      0.890 0.844  0 0.156
#> SRR1643171     1   0.394      0.890 0.844  0 0.156
#> SRR1643172     1   0.394      0.890 0.844  0 0.156
#> SRR1643173     1   0.394      0.890 0.844  0 0.156
#> SRR1643174     1   0.394      0.890 0.844  0 0.156
#> SRR1643175     1   0.296      0.916 0.900  0 0.100
#> SRR1643176     1   0.296      0.916 0.900  0 0.100
#> SRR1643177     1   0.296      0.916 0.900  0 0.100
#> SRR1643178     1   0.296      0.916 0.900  0 0.100
#> SRR1643180     1   0.394      0.890 0.844  0 0.156
#> SRR1643181     1   0.394      0.890 0.844  0 0.156
#> SRR1643182     1   0.394      0.890 0.844  0 0.156
#> SRR1643183     1   0.394      0.890 0.844  0 0.156
#> SRR1643184     1   0.394      0.890 0.844  0 0.156
#> SRR1643185     1   0.394      0.890 0.844  0 0.156
#> SRR1643186     1   0.394      0.890 0.844  0 0.156
#> SRR1643187     1   0.263      0.920 0.916  0 0.084
#> SRR1643188     1   0.263      0.920 0.916  0 0.084
#> SRR1643189     1   0.263      0.920 0.916  0 0.084
#> SRR1643190     1   0.263      0.920 0.916  0 0.084
#> SRR1643191     1   0.394      0.890 0.844  0 0.156
#> SRR1643192     1   0.394      0.890 0.844  0 0.156
#> SRR1643193     1   0.263      0.920 0.916  0 0.084
#> SRR1643194     1   0.263      0.920 0.916  0 0.084
#> SRR1643195     1   0.000      0.934 1.000  0 0.000
#> SRR1643196     1   0.000      0.934 1.000  0 0.000
#> SRR1643197     1   0.394      0.890 0.844  0 0.156
#> SRR1643198     1   0.394      0.890 0.844  0 0.156
#> SRR1643199     1   0.394      0.890 0.844  0 0.156
#> SRR1643200     1   0.394      0.890 0.844  0 0.156
#> SRR1643201     1   0.000      0.934 1.000  0 0.000
#> SRR1643202     1   0.000      0.934 1.000  0 0.000
#> SRR1643203     1   0.341      0.906 0.876  0 0.124
#> SRR1643204     1   0.341      0.906 0.876  0 0.124
#> SRR1643205     3   0.000      1.000 0.000  0 1.000
#> SRR1643206     3   0.000      1.000 0.000  0 1.000
#> SRR1643207     3   0.000      1.000 0.000  0 1.000
#> SRR1643208     3   0.000      1.000 0.000  0 1.000
#> SRR1643209     3   0.000      1.000 0.000  0 1.000
#> SRR1643210     3   0.000      1.000 0.000  0 1.000
#> SRR1643211     3   0.000      1.000 0.000  0 1.000
#> SRR1643212     3   0.000      1.000 0.000  0 1.000
#> SRR1643213     3   0.000      1.000 0.000  0 1.000
#> SRR1643214     3   0.000      1.000 0.000  0 1.000
#> SRR1643215     3   0.000      1.000 0.000  0 1.000
#> SRR1643216     3   0.000      1.000 0.000  0 1.000
#> SRR1643217     3   0.000      1.000 0.000  0 1.000
#> SRR1643218     3   0.000      1.000 0.000  0 1.000
#> SRR1643219     3   0.000      1.000 0.000  0 1.000
#> SRR1643220     3   0.000      1.000 0.000  0 1.000
#> SRR1643221     3   0.000      1.000 0.000  0 1.000
#> SRR1643222     3   0.000      1.000 0.000  0 1.000
#> SRR1643223     3   0.000      1.000 0.000  0 1.000
#> SRR1643224     3   0.000      1.000 0.000  0 1.000
#> SRR1643225     3   0.000      1.000 0.000  0 1.000
#> SRR1643226     3   0.000      1.000 0.000  0 1.000
#> SRR1643227     3   0.000      1.000 0.000  0 1.000
#> SRR1643228     3   0.000      1.000 0.000  0 1.000
#> SRR1643229     3   0.000      1.000 0.000  0 1.000
#> SRR1643230     3   0.000      1.000 0.000  0 1.000
#> SRR1643231     3   0.000      1.000 0.000  0 1.000
#> SRR1643232     3   0.000      1.000 0.000  0 1.000
#> SRR1643233     3   0.000      1.000 0.000  0 1.000
#> SRR1643234     3   0.000      1.000 0.000  0 1.000
#> SRR1643235     3   0.000      1.000 0.000  0 1.000
#> SRR1643236     3   0.000      1.000 0.000  0 1.000
#> SRR1643237     3   0.000      1.000 0.000  0 1.000
#> SRR1643238     3   0.000      1.000 0.000  0 1.000
#> SRR1643239     3   0.000      1.000 0.000  0 1.000
#> SRR1643240     3   0.000      1.000 0.000  0 1.000
#> SRR1643241     3   0.000      1.000 0.000  0 1.000
#> SRR1643242     3   0.000      1.000 0.000  0 1.000
#> SRR1643243     3   0.000      1.000 0.000  0 1.000
#> SRR1643245     3   0.000      1.000 0.000  0 1.000
#> SRR1643246     3   0.000      1.000 0.000  0 1.000
#> SRR1643247     3   0.000      1.000 0.000  0 1.000
#> SRR1643248     3   0.000      1.000 0.000  0 1.000
#> SRR1643249     3   0.000      1.000 0.000  0 1.000
#> SRR1643250     1   0.000      0.934 1.000  0 0.000
#> SRR1643251     1   0.000      0.934 1.000  0 0.000
#> SRR1643252     1   0.000      0.934 1.000  0 0.000
#> SRR1643253     1   0.000      0.934 1.000  0 0.000
#> SRR1643254     1   0.000      0.934 1.000  0 0.000
#> SRR1643255     1   0.000      0.934 1.000  0 0.000
#> SRR1643256     1   0.000      0.934 1.000  0 0.000
#> SRR1643257     1   0.000      0.934 1.000  0 0.000
#> SRR1643258     1   0.000      0.934 1.000  0 0.000
#> SRR1643259     1   0.000      0.934 1.000  0 0.000
#> SRR1643260     1   0.000      0.934 1.000  0 0.000
#> SRR1643261     1   0.000      0.934 1.000  0 0.000
#> SRR1643262     1   0.000      0.934 1.000  0 0.000
#> SRR1643263     1   0.000      0.934 1.000  0 0.000
#> SRR1643264     1   0.000      0.934 1.000  0 0.000
#> SRR1643266     1   0.000      0.934 1.000  0 0.000
#> SRR1643267     1   0.000      0.934 1.000  0 0.000
#> SRR1643268     1   0.000      0.934 1.000  0 0.000
#> SRR1643269     1   0.000      0.934 1.000  0 0.000
#> SRR1643270     1   0.000      0.934 1.000  0 0.000
#> SRR1643271     1   0.000      0.934 1.000  0 0.000
#> SRR1643272     1   0.000      0.934 1.000  0 0.000
#> SRR1643273     1   0.000      0.934 1.000  0 0.000
#> SRR1643274     1   0.000      0.934 1.000  0 0.000
#> SRR1643275     1   0.000      0.934 1.000  0 0.000
#> SRR1643276     1   0.000      0.934 1.000  0 0.000
#> SRR1643277     1   0.000      0.934 1.000  0 0.000
#> SRR1643278     1   0.000      0.934 1.000  0 0.000
#> SRR1643279     1   0.000      0.934 1.000  0 0.000
#> SRR1643280     1   0.000      0.934 1.000  0 0.000
#> SRR1643281     1   0.000      0.934 1.000  0 0.000
#> SRR1643282     1   0.000      0.934 1.000  0 0.000
#> SRR1643283     1   0.000      0.934 1.000  0 0.000
#> SRR1643284     1   0.000      0.934 1.000  0 0.000
#> SRR1643285     1   0.000      0.934 1.000  0 0.000
#> SRR1643286     1   0.000      0.934 1.000  0 0.000
#> SRR1643287     1   0.000      0.934 1.000  0 0.000
#> SRR1643288     1   0.000      0.934 1.000  0 0.000
#> SRR1643289     1   0.000      0.934 1.000  0 0.000
#> SRR1643290     1   0.000      0.934 1.000  0 0.000
#> SRR1643291     1   0.000      0.934 1.000  0 0.000
#> SRR1643292     1   0.000      0.934 1.000  0 0.000
#> SRR1643293     1   0.000      0.934 1.000  0 0.000
#> SRR1643294     1   0.000      0.934 1.000  0 0.000
#> SRR1643295     1   0.000      0.934 1.000  0 0.000
#> SRR1643296     1   0.000      0.934 1.000  0 0.000
#> SRR1643297     1   0.000      0.934 1.000  0 0.000
#> SRR1643298     1   0.000      0.934 1.000  0 0.000
#> SRR1643299     1   0.000      0.934 1.000  0 0.000
#> SRR1643300     1   0.000      0.934 1.000  0 0.000
#> SRR1643301     1   0.000      0.934 1.000  0 0.000
#> SRR1643302     1   0.000      0.934 1.000  0 0.000
#> SRR1643303     1   0.000      0.934 1.000  0 0.000
#> SRR1643304     1   0.000      0.934 1.000  0 0.000
#> SRR1643305     1   0.000      0.934 1.000  0 0.000
#> SRR1643306     1   0.000      0.934 1.000  0 0.000
#> SRR1643307     1   0.000      0.934 1.000  0 0.000
#> SRR1643308     1   0.000      0.934 1.000  0 0.000
#> SRR1643309     1   0.000      0.934 1.000  0 0.000
#> SRR1643310     1   0.000      0.934 1.000  0 0.000
#> SRR1643311     1   0.000      0.934 1.000  0 0.000
#> SRR1643312     1   0.000      0.934 1.000  0 0.000
#> SRR1643313     1   0.000      0.934 1.000  0 0.000
#> SRR1643314     1   0.280      0.918 0.908  0 0.092
#> SRR1643315     1   0.280      0.918 0.908  0 0.092
#> SRR1643316     1   0.280      0.918 0.908  0 0.092
#> SRR1643317     1   0.280      0.918 0.908  0 0.092
#> SRR1643318     1   0.280      0.918 0.908  0 0.092
#> SRR1643319     1   0.280      0.918 0.908  0 0.092
#> SRR1643320     1   0.280      0.918 0.908  0 0.092
#> SRR1643321     1   0.280      0.918 0.908  0 0.092
#> SRR1643322     1   0.280      0.918 0.908  0 0.092
#> SRR1643323     1   0.280      0.918 0.908  0 0.092
#> SRR1643324     1   0.280      0.918 0.908  0 0.092
#> SRR1643325     1   0.280      0.918 0.908  0 0.092
#> SRR1643326     1   0.280      0.918 0.908  0 0.092
#> SRR1643327     1   0.280      0.918 0.908  0 0.092
#> SRR1643328     1   0.418      0.880 0.828  0 0.172
#> SRR1643329     1   0.418      0.880 0.828  0 0.172
#> SRR1643330     1   0.418      0.880 0.828  0 0.172
#> SRR1643331     1   0.418      0.880 0.828  0 0.172
#> SRR1643332     1   0.418      0.880 0.828  0 0.172
#> SRR1643333     1   0.418      0.880 0.828  0 0.172
#> SRR1643334     1   0.418      0.880 0.828  0 0.172
#> SRR1643335     1   0.418      0.880 0.828  0 0.172
#> SRR1643336     1   0.418      0.880 0.828  0 0.172
#> SRR1643337     1   0.418      0.880 0.828  0 0.172
#> SRR1643338     1   0.418      0.880 0.828  0 0.172
#> SRR1643339     1   0.418      0.880 0.828  0 0.172
#> SRR1643340     1   0.418      0.880 0.828  0 0.172
#> SRR1643341     1   0.418      0.880 0.828  0 0.172
#> SRR1643342     1   0.418      0.880 0.828  0 0.172
#> SRR1643343     1   0.296      0.916 0.900  0 0.100
#> SRR1643344     1   0.296      0.916 0.900  0 0.100
#> SRR1643345     1   0.296      0.916 0.900  0 0.100
#> SRR1643346     1   0.296      0.916 0.900  0 0.100
#> SRR1643347     1   0.296      0.916 0.900  0 0.100
#> SRR1643348     1   0.296      0.916 0.900  0 0.100
#> SRR1643349     1   0.296      0.916 0.900  0 0.100
#> SRR1643350     1   0.296      0.916 0.900  0 0.100
#> SRR1643351     1   0.296      0.916 0.900  0 0.100
#> SRR1643352     1   0.296      0.916 0.900  0 0.100
#> SRR1643353     1   0.296      0.916 0.900  0 0.100
#> SRR1643354     1   0.296      0.916 0.900  0 0.100
#> SRR1643355     1   0.296      0.916 0.900  0 0.100
#> SRR1643356     1   0.296      0.916 0.900  0 0.100
#> SRR1643357     1   0.296      0.916 0.900  0 0.100
#> SRR1643358     1   0.000      0.934 1.000  0 0.000
#> SRR1643359     1   0.000      0.934 1.000  0 0.000
#> SRR1643360     1   0.000      0.934 1.000  0 0.000
#> SRR1643361     1   0.000      0.934 1.000  0 0.000
#> SRR1643362     1   0.000      0.934 1.000  0 0.000
#> SRR1643363     1   0.000      0.934 1.000  0 0.000
#> SRR1643364     1   0.000      0.934 1.000  0 0.000
#> SRR1643365     1   0.000      0.934 1.000  0 0.000
#> SRR1643366     1   0.000      0.934 1.000  0 0.000
#> SRR1643367     1   0.000      0.934 1.000  0 0.000
#> SRR1643368     1   0.000      0.934 1.000  0 0.000
#> SRR1643369     1   0.000      0.934 1.000  0 0.000
#> SRR1643370     1   0.000      0.934 1.000  0 0.000
#> SRR1643371     1   0.000      0.934 1.000  0 0.000
#> SRR1643372     1   0.000      0.934 1.000  0 0.000
#> SRR1643373     1   0.000      0.934 1.000  0 0.000
#> SRR1643374     1   0.000      0.934 1.000  0 0.000
#> SRR1643375     1   0.000      0.934 1.000  0 0.000
#> SRR1643376     1   0.000      0.934 1.000  0 0.000
#> SRR1643377     1   0.000      0.934 1.000  0 0.000
#> SRR1643378     1   0.000      0.934 1.000  0 0.000
#> SRR1643379     1   0.000      0.934 1.000  0 0.000
#> SRR1643380     1   0.000      0.934 1.000  0 0.000
#> SRR1643381     1   0.000      0.934 1.000  0 0.000
#> SRR1643382     1   0.000      0.934 1.000  0 0.000
#> SRR1643383     1   0.000      0.934 1.000  0 0.000
#> SRR1643384     1   0.000      0.934 1.000  0 0.000
#> SRR1643385     1   0.000      0.934 1.000  0 0.000
#> SRR1643386     1   0.000      0.934 1.000  0 0.000
#> SRR1643387     1   0.000      0.934 1.000  0 0.000
#> SRR1643388     1   0.000      0.934 1.000  0 0.000
#> SRR1643389     1   0.000      0.934 1.000  0 0.000
#> SRR1643390     1   0.418      0.880 0.828  0 0.172
#> SRR1643391     1   0.418      0.880 0.828  0 0.172
#> SRR1643392     1   0.418      0.880 0.828  0 0.172
#> SRR1643393     1   0.418      0.880 0.828  0 0.172
#> SRR1643394     1   0.418      0.880 0.828  0 0.172
#> SRR1643395     1   0.418      0.880 0.828  0 0.172
#> SRR1643396     1   0.418      0.880 0.828  0 0.172
#> SRR1643397     1   0.418      0.880 0.828  0 0.172
#> SRR1643398     1   0.418      0.880 0.828  0 0.172
#> SRR1643399     1   0.418      0.880 0.828  0 0.172
#> SRR1643400     1   0.418      0.880 0.828  0 0.172
#> SRR1643401     1   0.418      0.880 0.828  0 0.172
#> SRR1643402     1   0.418      0.880 0.828  0 0.172
#> SRR1643403     1   0.418      0.880 0.828  0 0.172
#> SRR1643404     1   0.418      0.880 0.828  0 0.172
#> SRR1643405     1   0.418      0.880 0.828  0 0.172
#> SRR1643406     1   0.418      0.880 0.828  0 0.172
#> SRR1643407     1   0.418      0.880 0.828  0 0.172
#> SRR1643408     1   0.418      0.880 0.828  0 0.172
#> SRR1643409     1   0.418      0.880 0.828  0 0.172
#> SRR1643410     1   0.418      0.880 0.828  0 0.172
#> SRR1643411     1   0.418      0.880 0.828  0 0.172
#> SRR1643412     1   0.418      0.880 0.828  0 0.172
#> SRR1643413     1   0.418      0.880 0.828  0 0.172
#> SRR1643414     1   0.418      0.880 0.828  0 0.172
#> SRR1643415     1   0.418      0.880 0.828  0 0.172
#> SRR1643416     1   0.418      0.880 0.828  0 0.172
#> SRR1643417     1   0.418      0.880 0.828  0 0.172
#> SRR1643418     1   0.000      0.934 1.000  0 0.000
#> SRR1643419     1   0.000      0.934 1.000  0 0.000
#> SRR1643420     1   0.000      0.934 1.000  0 0.000
#> SRR1643421     1   0.000      0.934 1.000  0 0.000
#> SRR1643422     1   0.000      0.934 1.000  0 0.000
#> SRR1643423     1   0.000      0.934 1.000  0 0.000
#> SRR1643424     1   0.000      0.934 1.000  0 0.000
#> SRR1643425     1   0.000      0.934 1.000  0 0.000
#> SRR1643426     1   0.000      0.934 1.000  0 0.000
#> SRR1643427     1   0.000      0.934 1.000  0 0.000
#> SRR1643428     1   0.000      0.934 1.000  0 0.000
#> SRR1643429     1   0.000      0.934 1.000  0 0.000
#> SRR1643430     1   0.000      0.934 1.000  0 0.000
#> SRR1643431     1   0.000      0.934 1.000  0 0.000
#> SRR1643432     1   0.000      0.934 1.000  0 0.000
#> SRR1643433     1   0.000      0.934 1.000  0 0.000
#> SRR1643434     1   0.000      0.934 1.000  0 0.000
#> SRR1643435     1   0.000      0.934 1.000  0 0.000
#> SRR1643436     1   0.000      0.934 1.000  0 0.000
#> SRR1643437     1   0.000      0.934 1.000  0 0.000
#> SRR1643438     1   0.000      0.934 1.000  0 0.000
#> SRR1643439     1   0.000      0.934 1.000  0 0.000
#> SRR1643440     1   0.000      0.934 1.000  0 0.000
#> SRR1643441     1   0.000      0.934 1.000  0 0.000
#> SRR1643442     1   0.000      0.934 1.000  0 0.000
#> SRR1643443     2   0.000      1.000 0.000  1 0.000
#> SRR1643444     2   0.000      1.000 0.000  1 0.000
#> SRR1643445     2   0.000      1.000 0.000  1 0.000
#> SRR1643446     2   0.000      1.000 0.000  1 0.000
#> SRR1643447     2   0.000      1.000 0.000  1 0.000
#> SRR1643448     2   0.000      1.000 0.000  1 0.000
#> SRR1643449     2   0.000      1.000 0.000  1 0.000
#> SRR1643450     2   0.000      1.000 0.000  1 0.000
#> SRR1643451     2   0.000      1.000 0.000  1 0.000
#> SRR1643452     2   0.000      1.000 0.000  1 0.000
#> SRR1643453     2   0.000      1.000 0.000  1 0.000
#> SRR1643454     2   0.000      1.000 0.000  1 0.000
#> SRR1643455     2   0.000      1.000 0.000  1 0.000
#> SRR1643456     2   0.000      1.000 0.000  1 0.000
#> SRR1643457     2   0.000      1.000 0.000  1 0.000
#> SRR1643458     2   0.000      1.000 0.000  1 0.000
#> SRR1643459     2   0.000      1.000 0.000  1 0.000
#> SRR1643460     2   0.000      1.000 0.000  1 0.000
#> SRR1643461     2   0.000      1.000 0.000  1 0.000
#> SRR1643462     2   0.000      1.000 0.000  1 0.000
#> SRR1643463     2   0.000      1.000 0.000  1 0.000
#> SRR1643464     2   0.000      1.000 0.000  1 0.000
#> SRR1643466     2   0.000      1.000 0.000  1 0.000
#> SRR1643467     2   0.000      1.000 0.000  1 0.000
#> SRR1643468     2   0.000      1.000 0.000  1 0.000
#> SRR1643469     2   0.000      1.000 0.000  1 0.000
#> SRR1643470     2   0.000      1.000 0.000  1 0.000
#> SRR1643471     2   0.000      1.000 0.000  1 0.000
#> SRR1643472     2   0.000      1.000 0.000  1 0.000
#> SRR1643473     2   0.000      1.000 0.000  1 0.000
#> SRR1643474     2   0.000      1.000 0.000  1 0.000
#> SRR1643475     2   0.000      1.000 0.000  1 0.000
#> SRR1643477     2   0.000      1.000 0.000  1 0.000
#> SRR1643478     2   0.000      1.000 0.000  1 0.000
#> SRR1643479     2   0.000      1.000 0.000  1 0.000
#> SRR1643480     2   0.000      1.000 0.000  1 0.000
#> SRR1643481     2   0.000      1.000 0.000  1 0.000
#> SRR1643482     2   0.000      1.000 0.000  1 0.000
#> SRR1643483     2   0.000      1.000 0.000  1 0.000
#> SRR1643484     2   0.000      1.000 0.000  1 0.000
#> SRR1643485     2   0.000      1.000 0.000  1 0.000
#> SRR1643486     2   0.000      1.000 0.000  1 0.000
#> SRR1643487     2   0.000      1.000 0.000  1 0.000
#> SRR1643488     2   0.000      1.000 0.000  1 0.000
#> SRR1643489     2   0.000      1.000 0.000  1 0.000
#> SRR1643490     2   0.000      1.000 0.000  1 0.000
#> SRR1643491     2   0.000      1.000 0.000  1 0.000
#> SRR1643492     2   0.000      1.000 0.000  1 0.000
#> SRR1643493     2   0.000      1.000 0.000  1 0.000
#> SRR1643494     2   0.000      1.000 0.000  1 0.000
#> SRR1643495     2   0.000      1.000 0.000  1 0.000
#> SRR1643496     2   0.000      1.000 0.000  1 0.000
#> SRR1643497     2   0.000      1.000 0.000  1 0.000
#> SRR1643498     2   0.000      1.000 0.000  1 0.000
#> SRR1643499     2   0.000      1.000 0.000  1 0.000
#> SRR1643500     2   0.000      1.000 0.000  1 0.000
#> SRR1643501     2   0.000      1.000 0.000  1 0.000
#> SRR1643502     2   0.000      1.000 0.000  1 0.000
#> SRR1643503     2   0.000      1.000 0.000  1 0.000
#> SRR1643504     2   0.000      1.000 0.000  1 0.000
#> SRR1643505     2   0.000      1.000 0.000  1 0.000
#> SRR1643506     2   0.000      1.000 0.000  1 0.000
#> SRR1643507     2   0.000      1.000 0.000  1 0.000
#> SRR1643508     2   0.000      1.000 0.000  1 0.000
#> SRR1643509     2   0.000      1.000 0.000  1 0.000
#> SRR1643510     2   0.000      1.000 0.000  1 0.000
#> SRR1643511     2   0.000      1.000 0.000  1 0.000
#> SRR1643512     2   0.000      1.000 0.000  1 0.000
#> SRR1643513     2   0.000      1.000 0.000  1 0.000
#> SRR1643531     2   0.000      1.000 0.000  1 0.000
#> SRR1643532     2   0.000      1.000 0.000  1 0.000
#> SRR1643533     2   0.000      1.000 0.000  1 0.000
#> SRR1643534     2   0.000      1.000 0.000  1 0.000
#> SRR1643535     2   0.000      1.000 0.000  1 0.000
#> SRR1643536     2   0.000      1.000 0.000  1 0.000
#> SRR1643537     2   0.000      1.000 0.000  1 0.000
#> SRR1643538     2   0.000      1.000 0.000  1 0.000
#> SRR1643539     2   0.000      1.000 0.000  1 0.000
#> SRR1643540     2   0.000      1.000 0.000  1 0.000
#> SRR1643541     2   0.000      1.000 0.000  1 0.000
#> SRR1643542     2   0.000      1.000 0.000  1 0.000
#> SRR1643543     2   0.000      1.000 0.000  1 0.000
#> SRR1643544     2   0.000      1.000 0.000  1 0.000
#> SRR1643514     2   0.000      1.000 0.000  1 0.000
#> SRR1643515     2   0.000      1.000 0.000  1 0.000
#> SRR1643516     2   0.000      1.000 0.000  1 0.000
#> SRR1643517     2   0.000      1.000 0.000  1 0.000
#> SRR1643518     2   0.000      1.000 0.000  1 0.000
#> SRR1643519     2   0.000      1.000 0.000  1 0.000
#> SRR1643520     2   0.000      1.000 0.000  1 0.000
#> SRR1643521     2   0.000      1.000 0.000  1 0.000
#> SRR1643522     2   0.000      1.000 0.000  1 0.000
#> SRR1643523     2   0.000      1.000 0.000  1 0.000
#> SRR1643524     2   0.000      1.000 0.000  1 0.000
#> SRR1643525     2   0.000      1.000 0.000  1 0.000
#> SRR1643526     2   0.000      1.000 0.000  1 0.000
#> SRR1643527     2   0.000      1.000 0.000  1 0.000
#> SRR1643528     2   0.000      1.000 0.000  1 0.000
#> SRR1643529     2   0.000      1.000 0.000  1 0.000
#> SRR1643530     2   0.000      1.000 0.000  1 0.000
#> SRR1643545     2   0.000      1.000 0.000  1 0.000
#> SRR1643546     2   0.000      1.000 0.000  1 0.000
#> SRR1643547     2   0.000      1.000 0.000  1 0.000
#> SRR1643548     2   0.000      1.000 0.000  1 0.000
#> SRR1643549     2   0.000      1.000 0.000  1 0.000
#> SRR1643550     2   0.000      1.000 0.000  1 0.000
#> SRR1643551     2   0.000      1.000 0.000  1 0.000
#> SRR1643552     2   0.000      1.000 0.000  1 0.000
#> SRR1643553     2   0.000      1.000 0.000  1 0.000
#> SRR1643554     2   0.000      1.000 0.000  1 0.000
#> SRR1643555     2   0.000      1.000 0.000  1 0.000
#> SRR1643556     2   0.000      1.000 0.000  1 0.000
#> SRR1643558     2   0.000      1.000 0.000  1 0.000
#> SRR1643559     2   0.000      1.000 0.000  1 0.000
#> SRR1643560     2   0.000      1.000 0.000  1 0.000
#> SRR1643561     2   0.000      1.000 0.000  1 0.000
#> SRR1643562     2   0.000      1.000 0.000  1 0.000
#> SRR1643563     2   0.000      1.000 0.000  1 0.000
#> SRR1643564     2   0.000      1.000 0.000  1 0.000
#> SRR1643565     2   0.000      1.000 0.000  1 0.000
#> SRR1643566     2   0.000      1.000 0.000  1 0.000
#> SRR1643567     2   0.000      1.000 0.000  1 0.000
#> SRR1643568     2   0.000      1.000 0.000  1 0.000
#> SRR1643569     2   0.000      1.000 0.000  1 0.000
#> SRR1643570     2   0.000      1.000 0.000  1 0.000
#> SRR1643571     2   0.000      1.000 0.000  1 0.000
#> SRR1643572     2   0.000      1.000 0.000  1 0.000

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1    p2    p3    p4
#> SRR1643167     1  0.0524      0.938 0.988 0.000 0.004 0.008
#> SRR1643168     1  0.0524      0.938 0.988 0.000 0.004 0.008
#> SRR1643169     1  0.0524      0.938 0.988 0.000 0.004 0.008
#> SRR1643170     1  0.0524      0.938 0.988 0.000 0.004 0.008
#> SRR1643171     1  0.0524      0.938 0.988 0.000 0.004 0.008
#> SRR1643172     1  0.0524      0.938 0.988 0.000 0.004 0.008
#> SRR1643173     1  0.0524      0.938 0.988 0.000 0.004 0.008
#> SRR1643174     1  0.0524      0.938 0.988 0.000 0.004 0.008
#> SRR1643175     1  0.0336      0.938 0.992 0.000 0.000 0.008
#> SRR1643176     1  0.0336      0.938 0.992 0.000 0.000 0.008
#> SRR1643177     1  0.0336      0.938 0.992 0.000 0.000 0.008
#> SRR1643178     1  0.0336      0.938 0.992 0.000 0.000 0.008
#> SRR1643180     1  0.0524      0.938 0.988 0.000 0.004 0.008
#> SRR1643181     1  0.0524      0.938 0.988 0.000 0.004 0.008
#> SRR1643182     1  0.0524      0.938 0.988 0.000 0.004 0.008
#> SRR1643183     1  0.0524      0.938 0.988 0.000 0.004 0.008
#> SRR1643184     1  0.0524      0.938 0.988 0.000 0.004 0.008
#> SRR1643185     1  0.0524      0.938 0.988 0.000 0.004 0.008
#> SRR1643186     1  0.0524      0.938 0.988 0.000 0.004 0.008
#> SRR1643187     1  0.0336      0.938 0.992 0.000 0.000 0.008
#> SRR1643188     1  0.0336      0.938 0.992 0.000 0.000 0.008
#> SRR1643189     1  0.0336      0.938 0.992 0.000 0.000 0.008
#> SRR1643190     1  0.0336      0.938 0.992 0.000 0.000 0.008
#> SRR1643191     1  0.0524      0.938 0.988 0.000 0.004 0.008
#> SRR1643192     1  0.0524      0.938 0.988 0.000 0.004 0.008
#> SRR1643193     1  0.0336      0.938 0.992 0.000 0.000 0.008
#> SRR1643194     1  0.0336      0.938 0.992 0.000 0.000 0.008
#> SRR1643195     4  0.2216      0.874 0.092 0.000 0.000 0.908
#> SRR1643196     4  0.2216      0.874 0.092 0.000 0.000 0.908
#> SRR1643197     1  0.0336      0.938 0.992 0.000 0.000 0.008
#> SRR1643198     1  0.0336      0.938 0.992 0.000 0.000 0.008
#> SRR1643199     1  0.0524      0.938 0.988 0.000 0.004 0.008
#> SRR1643200     1  0.0524      0.938 0.988 0.000 0.004 0.008
#> SRR1643201     1  0.0336      0.938 0.992 0.000 0.000 0.008
#> SRR1643202     1  0.0336      0.938 0.992 0.000 0.000 0.008
#> SRR1643203     1  0.0336      0.938 0.992 0.000 0.000 0.008
#> SRR1643204     1  0.0336      0.938 0.992 0.000 0.000 0.008
#> SRR1643205     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643206     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643207     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643208     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643209     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643210     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643211     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643212     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643213     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643214     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643215     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643216     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643217     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643218     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643219     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643220     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643221     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643222     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643223     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643224     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643225     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643226     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643227     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643228     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643229     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643230     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643231     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643232     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643233     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643234     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643235     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643236     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643237     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643238     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643239     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643240     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643241     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643242     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643243     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643245     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643246     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643247     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643248     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643249     3  0.0000      1.000 0.000 0.000 1.000 0.000
#> SRR1643250     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643251     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643252     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643253     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643254     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643255     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643256     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643257     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643258     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643259     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643260     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643261     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643262     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643263     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643264     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643266     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643267     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643268     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643269     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643270     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643271     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643272     4  0.1022      0.921 0.032 0.000 0.000 0.968
#> SRR1643273     1  0.3907      0.734 0.768 0.000 0.000 0.232
#> SRR1643274     1  0.3907      0.734 0.768 0.000 0.000 0.232
#> SRR1643275     1  0.3907      0.734 0.768 0.000 0.000 0.232
#> SRR1643276     1  0.3907      0.734 0.768 0.000 0.000 0.232
#> SRR1643277     1  0.3907      0.734 0.768 0.000 0.000 0.232
#> SRR1643278     1  0.3907      0.734 0.768 0.000 0.000 0.232
#> SRR1643279     1  0.3907      0.734 0.768 0.000 0.000 0.232
#> SRR1643280     1  0.3907      0.734 0.768 0.000 0.000 0.232
#> SRR1643281     1  0.3907      0.734 0.768 0.000 0.000 0.232
#> SRR1643282     1  0.3907      0.734 0.768 0.000 0.000 0.232
#> SRR1643283     1  0.3907      0.734 0.768 0.000 0.000 0.232
#> SRR1643284     1  0.3907      0.734 0.768 0.000 0.000 0.232
#> SRR1643285     1  0.3907      0.734 0.768 0.000 0.000 0.232
#> SRR1643286     1  0.3907      0.734 0.768 0.000 0.000 0.232
#> SRR1643287     4  0.0817      0.916 0.024 0.000 0.000 0.976
#> SRR1643288     4  0.0817      0.916 0.024 0.000 0.000 0.976
#> SRR1643289     4  0.0817      0.916 0.024 0.000 0.000 0.976
#> SRR1643290     4  0.0817      0.916 0.024 0.000 0.000 0.976
#> SRR1643291     4  0.0817      0.916 0.024 0.000 0.000 0.976
#> SRR1643292     4  0.0817      0.916 0.024 0.000 0.000 0.976
#> SRR1643293     4  0.0817      0.916 0.024 0.000 0.000 0.976
#> SRR1643294     4  0.0817      0.916 0.024 0.000 0.000 0.976
#> SRR1643295     4  0.0817      0.916 0.024 0.000 0.000 0.976
#> SRR1643296     4  0.0817      0.916 0.024 0.000 0.000 0.976
#> SRR1643297     4  0.0817      0.916 0.024 0.000 0.000 0.976
#> SRR1643298     4  0.0817      0.916 0.024 0.000 0.000 0.976
#> SRR1643299     4  0.0817      0.916 0.024 0.000 0.000 0.976
#> SRR1643300     4  0.0817      0.916 0.024 0.000 0.000 0.976
#> SRR1643301     4  0.4989      0.131 0.472 0.000 0.000 0.528
#> SRR1643302     4  0.4989      0.131 0.472 0.000 0.000 0.528
#> SRR1643303     4  0.4989      0.131 0.472 0.000 0.000 0.528
#> SRR1643304     4  0.4989      0.131 0.472 0.000 0.000 0.528
#> SRR1643305     4  0.4989      0.131 0.472 0.000 0.000 0.528
#> SRR1643306     4  0.4989      0.131 0.472 0.000 0.000 0.528
#> SRR1643307     4  0.4989      0.131 0.472 0.000 0.000 0.528
#> SRR1643308     4  0.4989      0.131 0.472 0.000 0.000 0.528
#> SRR1643309     4  0.4989      0.131 0.472 0.000 0.000 0.528
#> SRR1643310     4  0.4989      0.131 0.472 0.000 0.000 0.528
#> SRR1643311     4  0.4989      0.131 0.472 0.000 0.000 0.528
#> SRR1643312     4  0.4989      0.131 0.472 0.000 0.000 0.528
#> SRR1643313     4  0.4989      0.131 0.472 0.000 0.000 0.528
#> SRR1643314     1  0.1302      0.941 0.956 0.000 0.000 0.044
#> SRR1643315     1  0.1302      0.941 0.956 0.000 0.000 0.044
#> SRR1643316     1  0.1302      0.941 0.956 0.000 0.000 0.044
#> SRR1643317     1  0.1302      0.941 0.956 0.000 0.000 0.044
#> SRR1643318     1  0.1302      0.941 0.956 0.000 0.000 0.044
#> SRR1643319     1  0.1302      0.941 0.956 0.000 0.000 0.044
#> SRR1643320     1  0.1302      0.941 0.956 0.000 0.000 0.044
#> SRR1643321     1  0.1302      0.941 0.956 0.000 0.000 0.044
#> SRR1643322     1  0.1302      0.941 0.956 0.000 0.000 0.044
#> SRR1643323     1  0.1302      0.941 0.956 0.000 0.000 0.044
#> SRR1643324     1  0.1302      0.941 0.956 0.000 0.000 0.044
#> SRR1643325     1  0.1302      0.941 0.956 0.000 0.000 0.044
#> SRR1643326     1  0.1302      0.941 0.956 0.000 0.000 0.044
#> SRR1643327     1  0.1302      0.941 0.956 0.000 0.000 0.044
#> SRR1643328     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643329     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643330     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643331     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643332     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643333     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643334     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643335     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643336     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643337     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643338     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643339     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643340     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643341     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643342     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643343     1  0.2329      0.924 0.916 0.000 0.012 0.072
#> SRR1643344     1  0.2329      0.924 0.916 0.000 0.012 0.072
#> SRR1643345     1  0.2329      0.924 0.916 0.000 0.012 0.072
#> SRR1643346     1  0.2329      0.924 0.916 0.000 0.012 0.072
#> SRR1643347     1  0.2329      0.924 0.916 0.000 0.012 0.072
#> SRR1643348     1  0.2329      0.924 0.916 0.000 0.012 0.072
#> SRR1643349     1  0.2329      0.924 0.916 0.000 0.012 0.072
#> SRR1643350     1  0.2329      0.924 0.916 0.000 0.012 0.072
#> SRR1643351     1  0.2329      0.924 0.916 0.000 0.012 0.072
#> SRR1643352     1  0.2329      0.924 0.916 0.000 0.012 0.072
#> SRR1643353     1  0.2329      0.924 0.916 0.000 0.012 0.072
#> SRR1643354     1  0.2329      0.924 0.916 0.000 0.012 0.072
#> SRR1643355     1  0.2329      0.924 0.916 0.000 0.012 0.072
#> SRR1643356     1  0.2329      0.924 0.916 0.000 0.012 0.072
#> SRR1643357     1  0.2329      0.924 0.916 0.000 0.012 0.072
#> SRR1643358     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643359     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643360     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643361     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643362     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643363     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643364     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643365     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643366     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643367     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643368     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643369     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643370     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643371     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643372     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643373     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643374     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643375     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643376     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643377     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643378     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643379     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643380     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643381     4  0.0817      0.921 0.024 0.000 0.000 0.976
#> SRR1643382     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643383     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643384     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643385     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643386     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643387     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643388     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643389     4  0.0921      0.922 0.028 0.000 0.000 0.972
#> SRR1643390     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643391     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643392     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643393     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643394     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643395     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643396     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643397     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643398     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643399     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643400     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643401     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643402     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643403     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643404     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643405     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643406     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643407     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643408     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643409     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643410     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643411     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643412     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643413     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643414     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643415     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643416     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643417     1  0.1724      0.945 0.948 0.000 0.032 0.020
#> SRR1643418     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643419     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643420     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643421     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643422     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643423     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643424     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643425     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643426     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643427     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643428     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643429     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643430     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643431     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643432     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643433     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643434     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643435     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643436     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643437     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643438     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643439     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643440     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643441     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643442     4  0.0336      0.915 0.008 0.000 0.000 0.992
#> SRR1643443     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643444     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643445     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643446     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643447     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643448     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643449     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643450     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643451     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643452     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643453     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643454     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643455     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643456     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643457     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643458     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643459     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643460     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643461     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643462     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643463     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643464     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643466     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643467     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643468     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643469     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643470     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643471     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643472     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643473     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643474     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643475     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643477     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643478     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643479     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643480     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643481     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643482     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643483     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643484     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643485     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643486     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643487     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643488     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643489     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643490     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643491     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643492     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643493     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643494     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643495     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643496     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643497     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643498     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643499     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643500     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643501     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643502     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643503     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643504     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643505     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643506     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643507     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643508     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643509     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643510     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643511     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643512     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643513     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643531     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643532     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643533     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643534     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643535     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643536     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643537     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643538     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643539     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643540     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643541     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643542     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643543     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643544     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643514     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643515     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643516     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643517     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643518     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643519     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643520     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643521     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643522     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643523     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643524     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643525     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643526     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643527     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643528     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643529     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643530     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643545     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643546     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643547     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643548     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643549     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643550     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643551     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643552     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643553     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643554     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643555     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643556     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643558     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643559     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643560     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643561     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643562     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643563     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643564     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643565     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643566     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643567     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643568     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643569     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643570     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643571     2  0.0336      0.996 0.000 0.992 0.000 0.008
#> SRR1643572     2  0.0336      0.996 0.000 0.992 0.000 0.008

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1    p2 p3    p4    p5
#> SRR1643167     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643168     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643169     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643170     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643171     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643172     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643173     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643174     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643175     1  0.2358     0.4789 0.888 0.000  0 0.008 0.104
#> SRR1643176     1  0.2358     0.4789 0.888 0.000  0 0.008 0.104
#> SRR1643177     1  0.2358     0.4789 0.888 0.000  0 0.008 0.104
#> SRR1643178     1  0.2358     0.4789 0.888 0.000  0 0.008 0.104
#> SRR1643180     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643181     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643182     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643183     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643184     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643185     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643186     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643187     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643188     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643189     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643190     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643191     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643192     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643193     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643194     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643195     1  0.5378    -0.0988 0.548 0.000  0 0.392 0.060
#> SRR1643196     1  0.5378    -0.0988 0.548 0.000  0 0.392 0.060
#> SRR1643197     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643198     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643199     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643200     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643201     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643202     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643203     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643204     1  0.0000     0.5732 1.000 0.000  0 0.000 0.000
#> SRR1643205     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643206     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643207     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643208     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643209     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643210     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643211     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643212     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643213     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643214     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643215     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643216     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643217     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643218     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643219     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643220     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643221     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643222     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643223     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643224     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643225     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643226     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643227     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643228     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643229     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643230     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643231     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643232     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643233     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643234     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643235     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643236     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643237     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643238     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643239     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643240     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643241     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643242     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643243     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643245     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643246     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643247     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643248     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643249     3  0.0000     1.0000 0.000 0.000  1 0.000 0.000
#> SRR1643250     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643251     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643252     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643253     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643254     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643255     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643256     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643257     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643258     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643259     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643260     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643261     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643262     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643263     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643264     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643266     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643267     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643268     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643269     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643270     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643271     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643272     4  0.2136     0.8025 0.008 0.000  0 0.904 0.088
#> SRR1643273     5  0.5973     0.4889 0.164 0.000  0 0.256 0.580
#> SRR1643274     5  0.5973     0.4889 0.164 0.000  0 0.256 0.580
#> SRR1643275     5  0.5973     0.4889 0.164 0.000  0 0.256 0.580
#> SRR1643276     5  0.5973     0.4889 0.164 0.000  0 0.256 0.580
#> SRR1643277     5  0.5973     0.4889 0.164 0.000  0 0.256 0.580
#> SRR1643278     5  0.5973     0.4889 0.164 0.000  0 0.256 0.580
#> SRR1643279     5  0.5973     0.4889 0.164 0.000  0 0.256 0.580
#> SRR1643280     5  0.5973     0.4889 0.164 0.000  0 0.256 0.580
#> SRR1643281     5  0.5973     0.4889 0.164 0.000  0 0.256 0.580
#> SRR1643282     5  0.5973     0.4889 0.164 0.000  0 0.256 0.580
#> SRR1643283     5  0.5973     0.4889 0.164 0.000  0 0.256 0.580
#> SRR1643284     5  0.5973     0.4889 0.164 0.000  0 0.256 0.580
#> SRR1643285     5  0.5973     0.4889 0.164 0.000  0 0.256 0.580
#> SRR1643286     5  0.5973     0.4889 0.164 0.000  0 0.256 0.580
#> SRR1643287     4  0.4088     0.5932 0.000 0.000  0 0.632 0.368
#> SRR1643288     4  0.4088     0.5932 0.000 0.000  0 0.632 0.368
#> SRR1643289     4  0.4088     0.5932 0.000 0.000  0 0.632 0.368
#> SRR1643290     4  0.4088     0.5932 0.000 0.000  0 0.632 0.368
#> SRR1643291     4  0.4088     0.5932 0.000 0.000  0 0.632 0.368
#> SRR1643292     4  0.4088     0.5932 0.000 0.000  0 0.632 0.368
#> SRR1643293     4  0.4088     0.5932 0.000 0.000  0 0.632 0.368
#> SRR1643294     4  0.4088     0.5932 0.000 0.000  0 0.632 0.368
#> SRR1643295     4  0.4088     0.5932 0.000 0.000  0 0.632 0.368
#> SRR1643296     4  0.4088     0.5932 0.000 0.000  0 0.632 0.368
#> SRR1643297     4  0.4088     0.5932 0.000 0.000  0 0.632 0.368
#> SRR1643298     4  0.4088     0.5932 0.000 0.000  0 0.632 0.368
#> SRR1643299     4  0.4088     0.5932 0.000 0.000  0 0.632 0.368
#> SRR1643300     4  0.4088     0.5932 0.000 0.000  0 0.632 0.368
#> SRR1643301     4  0.6557    -0.1463 0.204 0.000  0 0.428 0.368
#> SRR1643302     4  0.6557    -0.1463 0.204 0.000  0 0.428 0.368
#> SRR1643303     4  0.6557    -0.1463 0.204 0.000  0 0.428 0.368
#> SRR1643304     4  0.6557    -0.1463 0.204 0.000  0 0.428 0.368
#> SRR1643305     4  0.6557    -0.1463 0.204 0.000  0 0.428 0.368
#> SRR1643306     4  0.6557    -0.1463 0.204 0.000  0 0.428 0.368
#> SRR1643307     4  0.6557    -0.1463 0.204 0.000  0 0.428 0.368
#> SRR1643308     4  0.6557    -0.1463 0.204 0.000  0 0.428 0.368
#> SRR1643309     4  0.6557    -0.1463 0.204 0.000  0 0.428 0.368
#> SRR1643310     4  0.6557    -0.1463 0.204 0.000  0 0.428 0.368
#> SRR1643311     4  0.6557    -0.1463 0.204 0.000  0 0.428 0.368
#> SRR1643312     4  0.6557    -0.1463 0.204 0.000  0 0.428 0.368
#> SRR1643313     4  0.6557    -0.1463 0.204 0.000  0 0.428 0.368
#> SRR1643314     5  0.5230     0.3557 0.452 0.000  0 0.044 0.504
#> SRR1643315     5  0.5230     0.3557 0.452 0.000  0 0.044 0.504
#> SRR1643316     5  0.5230     0.3557 0.452 0.000  0 0.044 0.504
#> SRR1643317     5  0.5230     0.3557 0.452 0.000  0 0.044 0.504
#> SRR1643318     5  0.5230     0.3557 0.452 0.000  0 0.044 0.504
#> SRR1643319     5  0.5230     0.3557 0.452 0.000  0 0.044 0.504
#> SRR1643320     5  0.5230     0.3557 0.452 0.000  0 0.044 0.504
#> SRR1643321     5  0.5230     0.3557 0.452 0.000  0 0.044 0.504
#> SRR1643322     5  0.5230     0.3557 0.452 0.000  0 0.044 0.504
#> SRR1643323     5  0.5230     0.3557 0.452 0.000  0 0.044 0.504
#> SRR1643324     5  0.5230     0.3557 0.452 0.000  0 0.044 0.504
#> SRR1643325     5  0.5230     0.3557 0.452 0.000  0 0.044 0.504
#> SRR1643326     5  0.5230     0.3557 0.452 0.000  0 0.044 0.504
#> SRR1643327     5  0.5230     0.3557 0.452 0.000  0 0.044 0.504
#> SRR1643328     1  0.4256     0.2016 0.564 0.000  0 0.000 0.436
#> SRR1643329     1  0.4256     0.2016 0.564 0.000  0 0.000 0.436
#> SRR1643330     1  0.4256     0.2016 0.564 0.000  0 0.000 0.436
#> SRR1643331     1  0.4256     0.2016 0.564 0.000  0 0.000 0.436
#> SRR1643332     1  0.4256     0.2016 0.564 0.000  0 0.000 0.436
#> SRR1643333     1  0.4256     0.2016 0.564 0.000  0 0.000 0.436
#> SRR1643334     1  0.4256     0.2016 0.564 0.000  0 0.000 0.436
#> SRR1643335     1  0.4256     0.2016 0.564 0.000  0 0.000 0.436
#> SRR1643336     1  0.4256     0.2016 0.564 0.000  0 0.000 0.436
#> SRR1643337     1  0.4256     0.2016 0.564 0.000  0 0.000 0.436
#> SRR1643338     1  0.4256     0.2016 0.564 0.000  0 0.000 0.436
#> SRR1643339     1  0.4256     0.2016 0.564 0.000  0 0.000 0.436
#> SRR1643340     1  0.4256     0.2016 0.564 0.000  0 0.000 0.436
#> SRR1643341     1  0.4256     0.2016 0.564 0.000  0 0.000 0.436
#> SRR1643342     1  0.4256     0.2016 0.564 0.000  0 0.000 0.436
#> SRR1643343     5  0.5037     0.5502 0.228 0.000  0 0.088 0.684
#> SRR1643344     5  0.5037     0.5502 0.228 0.000  0 0.088 0.684
#> SRR1643345     5  0.5037     0.5502 0.228 0.000  0 0.088 0.684
#> SRR1643346     5  0.5037     0.5502 0.228 0.000  0 0.088 0.684
#> SRR1643347     5  0.5037     0.5502 0.228 0.000  0 0.088 0.684
#> SRR1643348     5  0.5037     0.5502 0.228 0.000  0 0.088 0.684
#> SRR1643349     5  0.5037     0.5502 0.228 0.000  0 0.088 0.684
#> SRR1643350     5  0.5037     0.5502 0.228 0.000  0 0.088 0.684
#> SRR1643351     5  0.5037     0.5502 0.228 0.000  0 0.088 0.684
#> SRR1643352     5  0.5037     0.5502 0.228 0.000  0 0.088 0.684
#> SRR1643353     5  0.5037     0.5502 0.228 0.000  0 0.088 0.684
#> SRR1643354     5  0.5037     0.5502 0.228 0.000  0 0.088 0.684
#> SRR1643355     5  0.5037     0.5502 0.228 0.000  0 0.088 0.684
#> SRR1643356     5  0.5037     0.5502 0.228 0.000  0 0.088 0.684
#> SRR1643357     5  0.5037     0.5502 0.228 0.000  0 0.088 0.684
#> SRR1643358     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643359     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643360     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643361     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643362     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643363     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643364     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643365     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643366     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643367     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643368     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643369     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643370     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643371     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643372     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643373     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643374     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643375     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643376     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643377     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643378     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643379     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643380     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643381     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643382     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643383     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643384     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643385     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643386     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643387     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643388     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643389     4  0.0898     0.8170 0.008 0.000  0 0.972 0.020
#> SRR1643390     1  0.4294     0.1791 0.532 0.000  0 0.000 0.468
#> SRR1643391     1  0.4294     0.1791 0.532 0.000  0 0.000 0.468
#> SRR1643392     1  0.4294     0.1791 0.532 0.000  0 0.000 0.468
#> SRR1643393     1  0.4294     0.1791 0.532 0.000  0 0.000 0.468
#> SRR1643394     1  0.4294     0.1791 0.532 0.000  0 0.000 0.468
#> SRR1643395     1  0.4294     0.1791 0.532 0.000  0 0.000 0.468
#> SRR1643396     1  0.4294     0.1791 0.532 0.000  0 0.000 0.468
#> SRR1643397     1  0.4294     0.1791 0.532 0.000  0 0.000 0.468
#> SRR1643398     1  0.4294     0.1791 0.532 0.000  0 0.000 0.468
#> SRR1643399     1  0.4294     0.1791 0.532 0.000  0 0.000 0.468
#> SRR1643400     1  0.4294     0.1791 0.532 0.000  0 0.000 0.468
#> SRR1643401     1  0.4294     0.1791 0.532 0.000  0 0.000 0.468
#> SRR1643402     1  0.4294     0.1791 0.532 0.000  0 0.000 0.468
#> SRR1643403     1  0.4294     0.1791 0.532 0.000  0 0.000 0.468
#> SRR1643404     1  0.4294     0.1791 0.532 0.000  0 0.000 0.468
#> SRR1643405     1  0.4307     0.0937 0.500 0.000  0 0.000 0.500
#> SRR1643406     5  0.4307    -0.1238 0.500 0.000  0 0.000 0.500
#> SRR1643407     5  0.4307    -0.1238 0.500 0.000  0 0.000 0.500
#> SRR1643408     5  0.4307    -0.1238 0.500 0.000  0 0.000 0.500
#> SRR1643409     1  0.4307     0.0937 0.500 0.000  0 0.000 0.500
#> SRR1643410     1  0.4307     0.0937 0.500 0.000  0 0.000 0.500
#> SRR1643411     1  0.4307     0.0937 0.500 0.000  0 0.000 0.500
#> SRR1643412     5  0.4307    -0.1238 0.500 0.000  0 0.000 0.500
#> SRR1643413     5  0.4307    -0.1238 0.500 0.000  0 0.000 0.500
#> SRR1643414     5  0.4307    -0.1238 0.500 0.000  0 0.000 0.500
#> SRR1643415     5  0.4307    -0.1238 0.500 0.000  0 0.000 0.500
#> SRR1643416     1  0.4307     0.0937 0.500 0.000  0 0.000 0.500
#> SRR1643417     5  0.4307    -0.1238 0.500 0.000  0 0.000 0.500
#> SRR1643418     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643419     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643420     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643421     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643422     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643423     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643424     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643425     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643426     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643427     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643428     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643429     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643430     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643431     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643432     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643433     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643434     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643435     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643436     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643437     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643438     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643439     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643440     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643441     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643442     4  0.2377     0.7748 0.000 0.000  0 0.872 0.128
#> SRR1643443     2  0.1121     0.9762 0.000 0.956  0 0.000 0.044
#> SRR1643444     2  0.1121     0.9762 0.000 0.956  0 0.000 0.044
#> SRR1643445     2  0.1121     0.9762 0.000 0.956  0 0.000 0.044
#> SRR1643446     2  0.1121     0.9762 0.000 0.956  0 0.000 0.044
#> SRR1643447     2  0.1121     0.9762 0.000 0.956  0 0.000 0.044
#> SRR1643448     2  0.1121     0.9762 0.000 0.956  0 0.000 0.044
#> SRR1643449     2  0.1121     0.9762 0.000 0.956  0 0.000 0.044
#> SRR1643450     2  0.1121     0.9762 0.000 0.956  0 0.000 0.044
#> SRR1643451     2  0.1121     0.9762 0.000 0.956  0 0.000 0.044
#> SRR1643452     2  0.1121     0.9762 0.000 0.956  0 0.000 0.044
#> SRR1643453     2  0.1121     0.9762 0.000 0.956  0 0.000 0.044
#> SRR1643454     2  0.1121     0.9762 0.000 0.956  0 0.000 0.044
#> SRR1643455     2  0.1121     0.9762 0.000 0.956  0 0.000 0.044
#> SRR1643456     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643457     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643458     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643459     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643460     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643461     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643462     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643463     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643464     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643466     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643467     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643468     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643469     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643470     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643471     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643472     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643473     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643474     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643475     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643477     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643478     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643479     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643480     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643481     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643482     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643483     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643484     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643485     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643486     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643487     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643488     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643489     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643490     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643491     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643492     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643493     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643494     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643495     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643496     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643497     2  0.0290     0.9818 0.000 0.992  0 0.000 0.008
#> SRR1643498     2  0.0290     0.9818 0.000 0.992  0 0.000 0.008
#> SRR1643499     2  0.0290     0.9818 0.000 0.992  0 0.000 0.008
#> SRR1643500     2  0.0290     0.9818 0.000 0.992  0 0.000 0.008
#> SRR1643501     2  0.0290     0.9818 0.000 0.992  0 0.000 0.008
#> SRR1643502     2  0.0290     0.9818 0.000 0.992  0 0.000 0.008
#> SRR1643503     2  0.0290     0.9818 0.000 0.992  0 0.000 0.008
#> SRR1643504     2  0.0290     0.9818 0.000 0.992  0 0.000 0.008
#> SRR1643505     2  0.0290     0.9818 0.000 0.992  0 0.000 0.008
#> SRR1643506     2  0.0290     0.9818 0.000 0.992  0 0.000 0.008
#> SRR1643507     2  0.0290     0.9818 0.000 0.992  0 0.000 0.008
#> SRR1643508     2  0.0290     0.9818 0.000 0.992  0 0.000 0.008
#> SRR1643509     2  0.0290     0.9818 0.000 0.992  0 0.000 0.008
#> SRR1643510     2  0.0290     0.9818 0.000 0.992  0 0.000 0.008
#> SRR1643511     2  0.0290     0.9818 0.000 0.992  0 0.000 0.008
#> SRR1643512     2  0.0290     0.9818 0.000 0.992  0 0.000 0.008
#> SRR1643513     2  0.0290     0.9818 0.000 0.992  0 0.000 0.008
#> SRR1643531     2  0.1043     0.9774 0.000 0.960  0 0.000 0.040
#> SRR1643532     2  0.1043     0.9774 0.000 0.960  0 0.000 0.040
#> SRR1643533     2  0.1043     0.9774 0.000 0.960  0 0.000 0.040
#> SRR1643534     2  0.1043     0.9774 0.000 0.960  0 0.000 0.040
#> SRR1643535     2  0.1043     0.9774 0.000 0.960  0 0.000 0.040
#> SRR1643536     2  0.1043     0.9774 0.000 0.960  0 0.000 0.040
#> SRR1643537     2  0.1043     0.9774 0.000 0.960  0 0.000 0.040
#> SRR1643538     2  0.1043     0.9774 0.000 0.960  0 0.000 0.040
#> SRR1643539     2  0.1043     0.9774 0.000 0.960  0 0.000 0.040
#> SRR1643540     2  0.1043     0.9774 0.000 0.960  0 0.000 0.040
#> SRR1643541     2  0.1043     0.9774 0.000 0.960  0 0.000 0.040
#> SRR1643542     2  0.1043     0.9774 0.000 0.960  0 0.000 0.040
#> SRR1643543     2  0.1043     0.9774 0.000 0.960  0 0.000 0.040
#> SRR1643544     2  0.1043     0.9774 0.000 0.960  0 0.000 0.040
#> SRR1643514     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643515     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643516     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643517     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643518     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643519     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643520     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643521     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643522     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643523     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643524     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643525     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643526     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643527     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643528     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643529     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643530     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643545     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643546     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643547     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643548     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643549     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643550     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643551     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643552     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643553     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643554     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643555     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643556     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643558     2  0.0404     0.9815 0.000 0.988  0 0.000 0.012
#> SRR1643559     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643560     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643561     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643562     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643563     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643564     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643565     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643566     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643567     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643568     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643569     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643570     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643571     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028
#> SRR1643572     2  0.0794     0.9807 0.000 0.972  0 0.000 0.028

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2    p3    p4    p5    p6
#> SRR1643167     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643168     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643169     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643170     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643171     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643172     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643173     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643174     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643175     5  0.5026      0.816 0.268 0.000 0.000 0.016 0.640 0.076
#> SRR1643176     5  0.5026      0.816 0.268 0.000 0.000 0.016 0.640 0.076
#> SRR1643177     5  0.5026      0.816 0.268 0.000 0.000 0.016 0.640 0.076
#> SRR1643178     5  0.5026      0.816 0.268 0.000 0.000 0.016 0.640 0.076
#> SRR1643180     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643181     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643182     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643183     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643184     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643185     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643186     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643187     5  0.3690      0.948 0.288 0.000 0.000 0.000 0.700 0.012
#> SRR1643188     5  0.3690      0.948 0.288 0.000 0.000 0.000 0.700 0.012
#> SRR1643189     5  0.3690      0.948 0.288 0.000 0.000 0.000 0.700 0.012
#> SRR1643190     5  0.3690      0.948 0.288 0.000 0.000 0.000 0.700 0.012
#> SRR1643191     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643192     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643193     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643194     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643195     5  0.5429      0.529 0.072 0.000 0.000 0.176 0.668 0.084
#> SRR1643196     5  0.5429      0.529 0.072 0.000 0.000 0.176 0.668 0.084
#> SRR1643197     5  0.3690      0.948 0.288 0.000 0.000 0.000 0.700 0.012
#> SRR1643198     5  0.3690      0.948 0.288 0.000 0.000 0.000 0.700 0.012
#> SRR1643199     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643200     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643201     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643202     5  0.3351      0.952 0.288 0.000 0.000 0.000 0.712 0.000
#> SRR1643203     5  0.3690      0.948 0.288 0.000 0.000 0.000 0.700 0.012
#> SRR1643204     5  0.3690      0.948 0.288 0.000 0.000 0.000 0.700 0.012
#> SRR1643205     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643206     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643207     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643208     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643209     3  0.0363      0.994 0.000 0.000 0.988 0.000 0.000 0.012
#> SRR1643210     3  0.0363      0.994 0.000 0.000 0.988 0.000 0.000 0.012
#> SRR1643211     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643212     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643213     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643214     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643215     3  0.0363      0.994 0.000 0.000 0.988 0.000 0.000 0.012
#> SRR1643216     3  0.0363      0.994 0.000 0.000 0.988 0.000 0.000 0.012
#> SRR1643217     3  0.0363      0.994 0.000 0.000 0.988 0.000 0.000 0.012
#> SRR1643218     3  0.0363      0.994 0.000 0.000 0.988 0.000 0.000 0.012
#> SRR1643219     3  0.0363      0.994 0.000 0.000 0.988 0.000 0.000 0.012
#> SRR1643220     3  0.0363      0.994 0.000 0.000 0.988 0.000 0.000 0.012
#> SRR1643221     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643222     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643223     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643224     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643225     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643226     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643227     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643228     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643229     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643230     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643231     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643232     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643233     3  0.0508      0.993 0.000 0.000 0.984 0.000 0.004 0.012
#> SRR1643234     3  0.0508      0.993 0.000 0.000 0.984 0.000 0.004 0.012
#> SRR1643235     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643236     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643237     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643238     3  0.0146      0.996 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643239     3  0.0146      0.996 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643240     3  0.0146      0.996 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643241     3  0.0146      0.996 0.000 0.000 0.996 0.000 0.000 0.004
#> SRR1643242     3  0.0508      0.993 0.000 0.000 0.984 0.000 0.004 0.012
#> SRR1643243     3  0.0508      0.993 0.000 0.000 0.984 0.000 0.004 0.012
#> SRR1643245     3  0.0508      0.993 0.000 0.000 0.984 0.000 0.004 0.012
#> SRR1643246     3  0.0508      0.993 0.000 0.000 0.984 0.000 0.004 0.012
#> SRR1643247     3  0.0508      0.993 0.000 0.000 0.984 0.000 0.004 0.012
#> SRR1643248     3  0.0000      0.996 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643249     3  0.0508      0.993 0.000 0.000 0.984 0.000 0.004 0.012
#> SRR1643250     4  0.3470      0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643251     4  0.3470      0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643252     4  0.3470      0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643253     4  0.3470      0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643254     4  0.3470      0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643255     4  0.3470      0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643256     4  0.3470      0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643257     4  0.3470      0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643258     4  0.3470      0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643259     4  0.3470      0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643260     4  0.3470      0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643261     4  0.3470      0.429 0.000 0.000 0.000 0.772 0.028 0.200
#> SRR1643262     4  0.3377      0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643263     4  0.3377      0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643264     4  0.3377      0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643266     4  0.3377      0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643267     4  0.3377      0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643268     4  0.3377      0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643269     4  0.3377      0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643270     4  0.3377      0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643271     4  0.3377      0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643272     4  0.3377      0.441 0.000 0.000 0.000 0.784 0.028 0.188
#> SRR1643273     6  0.6208      0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643274     6  0.6208      0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643275     6  0.6208      0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643276     6  0.6208      0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643277     6  0.6208      0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643278     6  0.6208      0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643279     6  0.6208      0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643280     6  0.6208      0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643281     6  0.6208      0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643282     6  0.6208      0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643283     6  0.6208      0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643284     6  0.6208      0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643285     6  0.6208      0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643286     6  0.6208      0.715 0.228 0.000 0.000 0.224 0.028 0.520
#> SRR1643287     6  0.4333      0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643288     6  0.4333      0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643289     6  0.4333      0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643290     6  0.4333      0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643291     6  0.4333      0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643292     6  0.4333      0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643293     6  0.4333      0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643294     6  0.4333      0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643295     6  0.4333      0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643296     6  0.4333      0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643297     6  0.4333      0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643298     6  0.4333      0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643299     6  0.4333      0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643300     6  0.4333      0.648 0.028 0.000 0.000 0.376 0.000 0.596
#> SRR1643301     4  0.7026     -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643302     4  0.7026     -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643303     4  0.7026     -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643304     4  0.7026     -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643305     4  0.7026     -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643306     4  0.7026     -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643307     4  0.7026     -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643308     4  0.7026     -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643309     4  0.7026     -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643310     4  0.7026     -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643311     4  0.7026     -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643312     4  0.7026     -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643313     4  0.7026     -0.263 0.288 0.000 0.000 0.396 0.072 0.244
#> SRR1643314     1  0.5882      0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643315     1  0.5882      0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643316     1  0.5882      0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643317     1  0.5882      0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643318     1  0.5882      0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643319     1  0.5882      0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643320     1  0.5882      0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643321     1  0.5882      0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643322     1  0.5882      0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643323     1  0.5882      0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643324     1  0.5882      0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643325     1  0.5882      0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643326     1  0.5882      0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643327     1  0.5882      0.551 0.632 0.000 0.000 0.104 0.104 0.160
#> SRR1643328     1  0.2344      0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643329     1  0.2344      0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643330     1  0.2344      0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643331     1  0.2344      0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643332     1  0.2344      0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643333     1  0.2344      0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643334     1  0.2344      0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643335     1  0.2344      0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643336     1  0.2344      0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643337     1  0.2344      0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643338     1  0.2344      0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643339     1  0.2344      0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643340     1  0.2344      0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643341     1  0.2344      0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643342     1  0.2344      0.697 0.892 0.000 0.000 0.004 0.076 0.028
#> SRR1643343     1  0.5928      0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643344     1  0.5928      0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643345     1  0.5928      0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643346     1  0.5928      0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643347     1  0.5928      0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643348     1  0.5928      0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643349     1  0.5928      0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643350     1  0.5928      0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643351     1  0.5928      0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643352     1  0.5928      0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643353     1  0.5928      0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643354     1  0.5928      0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643355     1  0.5928      0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643356     1  0.5928      0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643357     1  0.5928      0.392 0.488 0.000 0.000 0.060 0.064 0.388
#> SRR1643358     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643359     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643360     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643361     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643362     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643363     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643364     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643365     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643366     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643367     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643368     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643369     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643370     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643371     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643372     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643373     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643374     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643375     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643376     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643377     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643378     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643379     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643380     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643381     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643382     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643383     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643384     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643385     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643386     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643387     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643388     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643389     4  0.0146      0.605 0.004 0.000 0.000 0.996 0.000 0.000
#> SRR1643390     1  0.0748      0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643391     1  0.0748      0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643392     1  0.0748      0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643393     1  0.0748      0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643394     1  0.0748      0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643395     1  0.0748      0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643396     1  0.0748      0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643397     1  0.0748      0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643398     1  0.0748      0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643399     1  0.0748      0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643400     1  0.0748      0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643401     1  0.0748      0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643402     1  0.0748      0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643403     1  0.0748      0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643404     1  0.0748      0.722 0.976 0.000 0.000 0.004 0.016 0.004
#> SRR1643405     1  0.1049      0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643406     1  0.1049      0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643407     1  0.1049      0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643408     1  0.1049      0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643409     1  0.1049      0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643410     1  0.1049      0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643411     1  0.1049      0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643412     1  0.1049      0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643413     1  0.1049      0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643414     1  0.1049      0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643415     1  0.1049      0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643416     1  0.1049      0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643417     1  0.1049      0.721 0.960 0.000 0.000 0.000 0.008 0.032
#> SRR1643418     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643419     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643420     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643421     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643422     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643423     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643424     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643425     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643426     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643427     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643428     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643429     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643430     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643431     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643432     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643433     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643434     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643435     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643436     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643437     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643438     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643439     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643440     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643441     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643442     4  0.5167      0.463 0.000 0.000 0.000 0.612 0.148 0.240
#> SRR1643443     2  0.1644      0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643444     2  0.1644      0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643445     2  0.1644      0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643446     2  0.1644      0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643447     2  0.1644      0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643448     2  0.1644      0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643449     2  0.1644      0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643450     2  0.1644      0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643451     2  0.1644      0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643452     2  0.1644      0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643453     2  0.1644      0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643454     2  0.1644      0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643455     2  0.1644      0.963 0.000 0.932 0.000 0.000 0.028 0.040
#> SRR1643456     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643457     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643458     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643459     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643460     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643461     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643462     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643463     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643464     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643466     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643467     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643468     2  0.0622      0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643469     2  0.0622      0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643470     2  0.0622      0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643471     2  0.0622      0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643472     2  0.0622      0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643473     2  0.0622      0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643474     2  0.0622      0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643475     2  0.0622      0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643477     2  0.0622      0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643478     2  0.0622      0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643479     2  0.0622      0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643480     2  0.0622      0.970 0.000 0.980 0.000 0.000 0.012 0.008
#> SRR1643481     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643482     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643483     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643484     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643485     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643486     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643487     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643488     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643489     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643490     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643491     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643492     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643493     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643494     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643495     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643496     2  0.0520      0.972 0.000 0.984 0.000 0.000 0.008 0.008
#> SRR1643497     2  0.0820      0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643498     2  0.0820      0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643499     2  0.0820      0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643500     2  0.0820      0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643501     2  0.0820      0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643502     2  0.0820      0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643503     2  0.0820      0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643504     2  0.0820      0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643505     2  0.0820      0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643506     2  0.0820      0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643507     2  0.0820      0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643508     2  0.0820      0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643509     2  0.0820      0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643510     2  0.0820      0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643511     2  0.0820      0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643512     2  0.0820      0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643513     2  0.0820      0.968 0.000 0.972 0.000 0.000 0.012 0.016
#> SRR1643531     2  0.1498      0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643532     2  0.1498      0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643533     2  0.1498      0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643534     2  0.1498      0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643535     2  0.1498      0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643536     2  0.1498      0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643537     2  0.1498      0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643538     2  0.1498      0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643539     2  0.1498      0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643540     2  0.1498      0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643541     2  0.1498      0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643542     2  0.1498      0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643543     2  0.1498      0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643544     2  0.1498      0.966 0.000 0.940 0.000 0.000 0.032 0.028
#> SRR1643514     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643515     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643516     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643517     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643518     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643519     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643520     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643521     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643522     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643523     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643524     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643525     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643526     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643527     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643528     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643529     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643530     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643545     2  0.0405      0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643546     2  0.0405      0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643547     2  0.0405      0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643548     2  0.0405      0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643549     2  0.0405      0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643550     2  0.0405      0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643551     2  0.0405      0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643552     2  0.0405      0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643553     2  0.0405      0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643554     2  0.0405      0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643555     2  0.0405      0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643556     2  0.0405      0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643558     2  0.0405      0.972 0.000 0.988 0.000 0.000 0.008 0.004
#> SRR1643559     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643560     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643561     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643562     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643563     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643564     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643565     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643566     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643567     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643568     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643569     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643570     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643571     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028
#> SRR1643572     2  0.1257      0.969 0.000 0.952 0.000 0.000 0.020 0.028

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-MAD-skmeans-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-MAD-skmeans-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-MAD-skmeans-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-MAD-skmeans-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-MAD-skmeans-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-MAD-skmeans-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-MAD-skmeans-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-MAD-skmeans-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-MAD-skmeans-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-MAD-skmeans-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-MAD-skmeans-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-MAD-skmeans-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-MAD-skmeans-get-signatures-3

get_signatures(res, k = 5)

plot of chunk tab-MAD-skmeans-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-MAD-skmeans-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-MAD-skmeans-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-MAD-skmeans-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-MAD-skmeans-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)

plot of chunk tab-MAD-skmeans-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-MAD-skmeans-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk MAD-skmeans-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-MAD-skmeans-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-MAD-skmeans-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-MAD-skmeans-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-MAD-skmeans-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-MAD-skmeans-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk MAD-skmeans-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


MAD:pam*

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["MAD", "pam"]
# you can also extract it by
# res = res_list["MAD:pam"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'MAD' method.
#>   Subgroups are detected by 'pam' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 5.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk MAD-pam-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk MAD-pam-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000         0.4350 0.566   0.566
#> 3 3 1.000           0.999       1.000         0.2891 0.874   0.777
#> 4 4 0.913           0.934       0.968         0.2818 0.838   0.632
#> 5 5 0.933           0.933       0.946         0.0465 0.966   0.880
#> 6 6 0.842           0.896       0.909         0.0468 0.969   0.873

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 5
#> attr(,"optional")
#> [1] 2 3 4

There is also optional best \(k\) = 2 3 4 that is worth to check.

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1 p2    p3
#> SRR1643167     1   0.000      1.000 1.000  0 0.000
#> SRR1643168     1   0.000      1.000 1.000  0 0.000
#> SRR1643169     1   0.000      1.000 1.000  0 0.000
#> SRR1643170     1   0.000      1.000 1.000  0 0.000
#> SRR1643171     1   0.000      1.000 1.000  0 0.000
#> SRR1643172     1   0.000      1.000 1.000  0 0.000
#> SRR1643173     1   0.000      1.000 1.000  0 0.000
#> SRR1643174     1   0.000      1.000 1.000  0 0.000
#> SRR1643175     1   0.000      1.000 1.000  0 0.000
#> SRR1643176     1   0.000      1.000 1.000  0 0.000
#> SRR1643177     1   0.000      1.000 1.000  0 0.000
#> SRR1643178     1   0.000      1.000 1.000  0 0.000
#> SRR1643180     1   0.000      1.000 1.000  0 0.000
#> SRR1643181     1   0.000      1.000 1.000  0 0.000
#> SRR1643182     1   0.000      1.000 1.000  0 0.000
#> SRR1643183     1   0.000      1.000 1.000  0 0.000
#> SRR1643184     1   0.000      1.000 1.000  0 0.000
#> SRR1643185     1   0.000      1.000 1.000  0 0.000
#> SRR1643186     1   0.000      1.000 1.000  0 0.000
#> SRR1643187     1   0.000      1.000 1.000  0 0.000
#> SRR1643188     1   0.000      1.000 1.000  0 0.000
#> SRR1643189     1   0.000      1.000 1.000  0 0.000
#> SRR1643190     1   0.000      1.000 1.000  0 0.000
#> SRR1643191     1   0.000      1.000 1.000  0 0.000
#> SRR1643192     1   0.000      1.000 1.000  0 0.000
#> SRR1643193     1   0.000      1.000 1.000  0 0.000
#> SRR1643194     1   0.000      1.000 1.000  0 0.000
#> SRR1643195     1   0.000      1.000 1.000  0 0.000
#> SRR1643196     1   0.000      1.000 1.000  0 0.000
#> SRR1643197     1   0.000      1.000 1.000  0 0.000
#> SRR1643198     1   0.000      1.000 1.000  0 0.000
#> SRR1643199     1   0.000      1.000 1.000  0 0.000
#> SRR1643200     1   0.000      1.000 1.000  0 0.000
#> SRR1643201     1   0.000      1.000 1.000  0 0.000
#> SRR1643202     1   0.000      1.000 1.000  0 0.000
#> SRR1643203     1   0.000      1.000 1.000  0 0.000
#> SRR1643204     1   0.000      1.000 1.000  0 0.000
#> SRR1643205     3   0.000      0.996 0.000  0 1.000
#> SRR1643206     3   0.000      0.996 0.000  0 1.000
#> SRR1643207     3   0.000      0.996 0.000  0 1.000
#> SRR1643208     3   0.000      0.996 0.000  0 1.000
#> SRR1643209     3   0.000      0.996 0.000  0 1.000
#> SRR1643210     3   0.000      0.996 0.000  0 1.000
#> SRR1643211     3   0.000      0.996 0.000  0 1.000
#> SRR1643212     3   0.000      0.996 0.000  0 1.000
#> SRR1643213     3   0.000      0.996 0.000  0 1.000
#> SRR1643214     3   0.000      0.996 0.000  0 1.000
#> SRR1643215     3   0.000      0.996 0.000  0 1.000
#> SRR1643216     3   0.000      0.996 0.000  0 1.000
#> SRR1643217     3   0.000      0.996 0.000  0 1.000
#> SRR1643218     3   0.000      0.996 0.000  0 1.000
#> SRR1643219     3   0.000      0.996 0.000  0 1.000
#> SRR1643220     3   0.000      0.996 0.000  0 1.000
#> SRR1643221     3   0.000      0.996 0.000  0 1.000
#> SRR1643222     3   0.000      0.996 0.000  0 1.000
#> SRR1643223     3   0.000      0.996 0.000  0 1.000
#> SRR1643224     3   0.000      0.996 0.000  0 1.000
#> SRR1643225     3   0.000      0.996 0.000  0 1.000
#> SRR1643226     3   0.000      0.996 0.000  0 1.000
#> SRR1643227     3   0.000      0.996 0.000  0 1.000
#> SRR1643228     3   0.000      0.996 0.000  0 1.000
#> SRR1643229     3   0.000      0.996 0.000  0 1.000
#> SRR1643230     3   0.000      0.996 0.000  0 1.000
#> SRR1643231     3   0.000      0.996 0.000  0 1.000
#> SRR1643232     3   0.000      0.996 0.000  0 1.000
#> SRR1643233     3   0.000      0.996 0.000  0 1.000
#> SRR1643234     3   0.000      0.996 0.000  0 1.000
#> SRR1643235     3   0.000      0.996 0.000  0 1.000
#> SRR1643236     3   0.000      0.996 0.000  0 1.000
#> SRR1643237     3   0.000      0.996 0.000  0 1.000
#> SRR1643238     3   0.000      0.996 0.000  0 1.000
#> SRR1643239     3   0.000      0.996 0.000  0 1.000
#> SRR1643240     3   0.000      0.996 0.000  0 1.000
#> SRR1643241     3   0.000      0.996 0.000  0 1.000
#> SRR1643242     3   0.000      0.996 0.000  0 1.000
#> SRR1643243     3   0.000      0.996 0.000  0 1.000
#> SRR1643245     3   0.000      0.996 0.000  0 1.000
#> SRR1643246     3   0.000      0.996 0.000  0 1.000
#> SRR1643247     3   0.000      0.996 0.000  0 1.000
#> SRR1643248     3   0.000      0.996 0.000  0 1.000
#> SRR1643249     3   0.388      0.804 0.152  0 0.848
#> SRR1643250     1   0.000      1.000 1.000  0 0.000
#> SRR1643251     1   0.000      1.000 1.000  0 0.000
#> SRR1643252     1   0.000      1.000 1.000  0 0.000
#> SRR1643253     1   0.000      1.000 1.000  0 0.000
#> SRR1643254     1   0.000      1.000 1.000  0 0.000
#> SRR1643255     1   0.000      1.000 1.000  0 0.000
#> SRR1643256     1   0.000      1.000 1.000  0 0.000
#> SRR1643257     1   0.000      1.000 1.000  0 0.000
#> SRR1643258     1   0.000      1.000 1.000  0 0.000
#> SRR1643259     1   0.000      1.000 1.000  0 0.000
#> SRR1643260     1   0.000      1.000 1.000  0 0.000
#> SRR1643261     1   0.000      1.000 1.000  0 0.000
#> SRR1643262     1   0.000      1.000 1.000  0 0.000
#> SRR1643263     1   0.000      1.000 1.000  0 0.000
#> SRR1643264     1   0.000      1.000 1.000  0 0.000
#> SRR1643266     1   0.000      1.000 1.000  0 0.000
#> SRR1643267     1   0.000      1.000 1.000  0 0.000
#> SRR1643268     1   0.000      1.000 1.000  0 0.000
#> SRR1643269     1   0.000      1.000 1.000  0 0.000
#> SRR1643270     1   0.000      1.000 1.000  0 0.000
#> SRR1643271     1   0.000      1.000 1.000  0 0.000
#> SRR1643272     1   0.000      1.000 1.000  0 0.000
#> SRR1643273     1   0.000      1.000 1.000  0 0.000
#> SRR1643274     1   0.000      1.000 1.000  0 0.000
#> SRR1643275     1   0.000      1.000 1.000  0 0.000
#> SRR1643276     1   0.000      1.000 1.000  0 0.000
#> SRR1643277     1   0.000      1.000 1.000  0 0.000
#> SRR1643278     1   0.000      1.000 1.000  0 0.000
#> SRR1643279     1   0.000      1.000 1.000  0 0.000
#> SRR1643280     1   0.000      1.000 1.000  0 0.000
#> SRR1643281     1   0.000      1.000 1.000  0 0.000
#> SRR1643282     1   0.000      1.000 1.000  0 0.000
#> SRR1643283     1   0.000      1.000 1.000  0 0.000
#> SRR1643284     1   0.000      1.000 1.000  0 0.000
#> SRR1643285     1   0.000      1.000 1.000  0 0.000
#> SRR1643286     1   0.000      1.000 1.000  0 0.000
#> SRR1643287     1   0.000      1.000 1.000  0 0.000
#> SRR1643288     1   0.000      1.000 1.000  0 0.000
#> SRR1643289     1   0.000      1.000 1.000  0 0.000
#> SRR1643290     1   0.000      1.000 1.000  0 0.000
#> SRR1643291     1   0.000      1.000 1.000  0 0.000
#> SRR1643292     1   0.000      1.000 1.000  0 0.000
#> SRR1643293     1   0.000      1.000 1.000  0 0.000
#> SRR1643294     1   0.000      1.000 1.000  0 0.000
#> SRR1643295     1   0.000      1.000 1.000  0 0.000
#> SRR1643296     1   0.000      1.000 1.000  0 0.000
#> SRR1643297     1   0.000      1.000 1.000  0 0.000
#> SRR1643298     1   0.000      1.000 1.000  0 0.000
#> SRR1643299     1   0.000      1.000 1.000  0 0.000
#> SRR1643300     1   0.000      1.000 1.000  0 0.000
#> SRR1643301     1   0.000      1.000 1.000  0 0.000
#> SRR1643302     1   0.000      1.000 1.000  0 0.000
#> SRR1643303     1   0.000      1.000 1.000  0 0.000
#> SRR1643304     1   0.000      1.000 1.000  0 0.000
#> SRR1643305     1   0.000      1.000 1.000  0 0.000
#> SRR1643306     1   0.000      1.000 1.000  0 0.000
#> SRR1643307     1   0.000      1.000 1.000  0 0.000
#> SRR1643308     1   0.000      1.000 1.000  0 0.000
#> SRR1643309     1   0.000      1.000 1.000  0 0.000
#> SRR1643310     1   0.000      1.000 1.000  0 0.000
#> SRR1643311     1   0.000      1.000 1.000  0 0.000
#> SRR1643312     1   0.000      1.000 1.000  0 0.000
#> SRR1643313     1   0.000      1.000 1.000  0 0.000
#> SRR1643314     1   0.000      1.000 1.000  0 0.000
#> SRR1643315     1   0.000      1.000 1.000  0 0.000
#> SRR1643316     1   0.000      1.000 1.000  0 0.000
#> SRR1643317     1   0.000      1.000 1.000  0 0.000
#> SRR1643318     1   0.000      1.000 1.000  0 0.000
#> SRR1643319     1   0.000      1.000 1.000  0 0.000
#> SRR1643320     1   0.000      1.000 1.000  0 0.000
#> SRR1643321     1   0.000      1.000 1.000  0 0.000
#> SRR1643322     1   0.000      1.000 1.000  0 0.000
#> SRR1643323     1   0.000      1.000 1.000  0 0.000
#> SRR1643324     1   0.000      1.000 1.000  0 0.000
#> SRR1643325     1   0.000      1.000 1.000  0 0.000
#> SRR1643326     1   0.000      1.000 1.000  0 0.000
#> SRR1643327     1   0.000      1.000 1.000  0 0.000
#> SRR1643328     1   0.000      1.000 1.000  0 0.000
#> SRR1643329     1   0.000      1.000 1.000  0 0.000
#> SRR1643330     1   0.000      1.000 1.000  0 0.000
#> SRR1643331     1   0.000      1.000 1.000  0 0.000
#> SRR1643332     1   0.000      1.000 1.000  0 0.000
#> SRR1643333     1   0.000      1.000 1.000  0 0.000
#> SRR1643334     1   0.000      1.000 1.000  0 0.000
#> SRR1643335     1   0.000      1.000 1.000  0 0.000
#> SRR1643336     1   0.000      1.000 1.000  0 0.000
#> SRR1643337     1   0.000      1.000 1.000  0 0.000
#> SRR1643338     1   0.000      1.000 1.000  0 0.000
#> SRR1643339     1   0.000      1.000 1.000  0 0.000
#> SRR1643340     1   0.000      1.000 1.000  0 0.000
#> SRR1643341     1   0.000      1.000 1.000  0 0.000
#> SRR1643342     1   0.000      1.000 1.000  0 0.000
#> SRR1643343     1   0.000      1.000 1.000  0 0.000
#> SRR1643344     1   0.000      1.000 1.000  0 0.000
#> SRR1643345     1   0.000      1.000 1.000  0 0.000
#> SRR1643346     1   0.000      1.000 1.000  0 0.000
#> SRR1643347     1   0.000      1.000 1.000  0 0.000
#> SRR1643348     1   0.000      1.000 1.000  0 0.000
#> SRR1643349     1   0.000      1.000 1.000  0 0.000
#> SRR1643350     1   0.000      1.000 1.000  0 0.000
#> SRR1643351     1   0.000      1.000 1.000  0 0.000
#> SRR1643352     1   0.000      1.000 1.000  0 0.000
#> SRR1643353     1   0.000      1.000 1.000  0 0.000
#> SRR1643354     1   0.000      1.000 1.000  0 0.000
#> SRR1643355     1   0.000      1.000 1.000  0 0.000
#> SRR1643356     1   0.000      1.000 1.000  0 0.000
#> SRR1643357     1   0.000      1.000 1.000  0 0.000
#> SRR1643358     1   0.000      1.000 1.000  0 0.000
#> SRR1643359     1   0.000      1.000 1.000  0 0.000
#> SRR1643360     1   0.000      1.000 1.000  0 0.000
#> SRR1643361     1   0.000      1.000 1.000  0 0.000
#> SRR1643362     1   0.000      1.000 1.000  0 0.000
#> SRR1643363     1   0.000      1.000 1.000  0 0.000
#> SRR1643364     1   0.000      1.000 1.000  0 0.000
#> SRR1643365     1   0.000      1.000 1.000  0 0.000
#> SRR1643366     1   0.000      1.000 1.000  0 0.000
#> SRR1643367     1   0.000      1.000 1.000  0 0.000
#> SRR1643368     1   0.000      1.000 1.000  0 0.000
#> SRR1643369     1   0.000      1.000 1.000  0 0.000
#> SRR1643370     1   0.000      1.000 1.000  0 0.000
#> SRR1643371     1   0.000      1.000 1.000  0 0.000
#> SRR1643372     1   0.000      1.000 1.000  0 0.000
#> SRR1643373     1   0.000      1.000 1.000  0 0.000
#> SRR1643374     1   0.000      1.000 1.000  0 0.000
#> SRR1643375     1   0.000      1.000 1.000  0 0.000
#> SRR1643376     1   0.000      1.000 1.000  0 0.000
#> SRR1643377     1   0.000      1.000 1.000  0 0.000
#> SRR1643378     1   0.000      1.000 1.000  0 0.000
#> SRR1643379     1   0.000      1.000 1.000  0 0.000
#> SRR1643380     1   0.000      1.000 1.000  0 0.000
#> SRR1643381     1   0.000      1.000 1.000  0 0.000
#> SRR1643382     1   0.000      1.000 1.000  0 0.000
#> SRR1643383     1   0.000      1.000 1.000  0 0.000
#> SRR1643384     1   0.000      1.000 1.000  0 0.000
#> SRR1643385     1   0.000      1.000 1.000  0 0.000
#> SRR1643386     1   0.000      1.000 1.000  0 0.000
#> SRR1643387     1   0.000      1.000 1.000  0 0.000
#> SRR1643388     1   0.000      1.000 1.000  0 0.000
#> SRR1643389     1   0.000      1.000 1.000  0 0.000
#> SRR1643390     1   0.000      1.000 1.000  0 0.000
#> SRR1643391     1   0.000      1.000 1.000  0 0.000
#> SRR1643392     1   0.000      1.000 1.000  0 0.000
#> SRR1643393     1   0.000      1.000 1.000  0 0.000
#> SRR1643394     1   0.000      1.000 1.000  0 0.000
#> SRR1643395     1   0.000      1.000 1.000  0 0.000
#> SRR1643396     1   0.000      1.000 1.000  0 0.000
#> SRR1643397     1   0.000      1.000 1.000  0 0.000
#> SRR1643398     1   0.000      1.000 1.000  0 0.000
#> SRR1643399     1   0.000      1.000 1.000  0 0.000
#> SRR1643400     1   0.000      1.000 1.000  0 0.000
#> SRR1643401     1   0.000      1.000 1.000  0 0.000
#> SRR1643402     1   0.000      1.000 1.000  0 0.000
#> SRR1643403     1   0.000      1.000 1.000  0 0.000
#> SRR1643404     1   0.000      1.000 1.000  0 0.000
#> SRR1643405     1   0.000      1.000 1.000  0 0.000
#> SRR1643406     1   0.000      1.000 1.000  0 0.000
#> SRR1643407     1   0.000      1.000 1.000  0 0.000
#> SRR1643408     1   0.000      1.000 1.000  0 0.000
#> SRR1643409     1   0.000      1.000 1.000  0 0.000
#> SRR1643410     1   0.000      1.000 1.000  0 0.000
#> SRR1643411     1   0.000      1.000 1.000  0 0.000
#> SRR1643412     1   0.000      1.000 1.000  0 0.000
#> SRR1643413     1   0.000      1.000 1.000  0 0.000
#> SRR1643414     1   0.000      1.000 1.000  0 0.000
#> SRR1643415     1   0.000      1.000 1.000  0 0.000
#> SRR1643416     1   0.000      1.000 1.000  0 0.000
#> SRR1643417     1   0.000      1.000 1.000  0 0.000
#> SRR1643418     1   0.000      1.000 1.000  0 0.000
#> SRR1643419     1   0.000      1.000 1.000  0 0.000
#> SRR1643420     1   0.000      1.000 1.000  0 0.000
#> SRR1643421     1   0.000      1.000 1.000  0 0.000
#> SRR1643422     1   0.000      1.000 1.000  0 0.000
#> SRR1643423     1   0.000      1.000 1.000  0 0.000
#> SRR1643424     1   0.000      1.000 1.000  0 0.000
#> SRR1643425     1   0.000      1.000 1.000  0 0.000
#> SRR1643426     1   0.000      1.000 1.000  0 0.000
#> SRR1643427     1   0.000      1.000 1.000  0 0.000
#> SRR1643428     1   0.000      1.000 1.000  0 0.000
#> SRR1643429     1   0.000      1.000 1.000  0 0.000
#> SRR1643430     1   0.000      1.000 1.000  0 0.000
#> SRR1643431     1   0.000      1.000 1.000  0 0.000
#> SRR1643432     1   0.000      1.000 1.000  0 0.000
#> SRR1643433     1   0.000      1.000 1.000  0 0.000
#> SRR1643434     1   0.000      1.000 1.000  0 0.000
#> SRR1643435     1   0.000      1.000 1.000  0 0.000
#> SRR1643436     1   0.000      1.000 1.000  0 0.000
#> SRR1643437     1   0.000      1.000 1.000  0 0.000
#> SRR1643438     1   0.000      1.000 1.000  0 0.000
#> SRR1643439     1   0.000      1.000 1.000  0 0.000
#> SRR1643440     1   0.000      1.000 1.000  0 0.000
#> SRR1643441     1   0.000      1.000 1.000  0 0.000
#> SRR1643442     1   0.000      1.000 1.000  0 0.000
#> SRR1643443     2   0.000      1.000 0.000  1 0.000
#> SRR1643444     2   0.000      1.000 0.000  1 0.000
#> SRR1643445     2   0.000      1.000 0.000  1 0.000
#> SRR1643446     2   0.000      1.000 0.000  1 0.000
#> SRR1643447     2   0.000      1.000 0.000  1 0.000
#> SRR1643448     2   0.000      1.000 0.000  1 0.000
#> SRR1643449     2   0.000      1.000 0.000  1 0.000
#> SRR1643450     2   0.000      1.000 0.000  1 0.000
#> SRR1643451     2   0.000      1.000 0.000  1 0.000
#> SRR1643452     2   0.000      1.000 0.000  1 0.000
#> SRR1643453     2   0.000      1.000 0.000  1 0.000
#> SRR1643454     2   0.000      1.000 0.000  1 0.000
#> SRR1643455     2   0.000      1.000 0.000  1 0.000
#> SRR1643456     2   0.000      1.000 0.000  1 0.000
#> SRR1643457     2   0.000      1.000 0.000  1 0.000
#> SRR1643458     2   0.000      1.000 0.000  1 0.000
#> SRR1643459     2   0.000      1.000 0.000  1 0.000
#> SRR1643460     2   0.000      1.000 0.000  1 0.000
#> SRR1643461     2   0.000      1.000 0.000  1 0.000
#> SRR1643462     2   0.000      1.000 0.000  1 0.000
#> SRR1643463     2   0.000      1.000 0.000  1 0.000
#> SRR1643464     2   0.000      1.000 0.000  1 0.000
#> SRR1643466     2   0.000      1.000 0.000  1 0.000
#> SRR1643467     2   0.000      1.000 0.000  1 0.000
#> SRR1643468     2   0.000      1.000 0.000  1 0.000
#> SRR1643469     2   0.000      1.000 0.000  1 0.000
#> SRR1643470     2   0.000      1.000 0.000  1 0.000
#> SRR1643471     2   0.000      1.000 0.000  1 0.000
#> SRR1643472     2   0.000      1.000 0.000  1 0.000
#> SRR1643473     2   0.000      1.000 0.000  1 0.000
#> SRR1643474     2   0.000      1.000 0.000  1 0.000
#> SRR1643475     2   0.000      1.000 0.000  1 0.000
#> SRR1643477     2   0.000      1.000 0.000  1 0.000
#> SRR1643478     2   0.000      1.000 0.000  1 0.000
#> SRR1643479     2   0.000      1.000 0.000  1 0.000
#> SRR1643480     2   0.000      1.000 0.000  1 0.000
#> SRR1643481     2   0.000      1.000 0.000  1 0.000
#> SRR1643482     2   0.000      1.000 0.000  1 0.000
#> SRR1643483     2   0.000      1.000 0.000  1 0.000
#> SRR1643484     2   0.000      1.000 0.000  1 0.000
#> SRR1643485     2   0.000      1.000 0.000  1 0.000
#> SRR1643486     2   0.000      1.000 0.000  1 0.000
#> SRR1643487     2   0.000      1.000 0.000  1 0.000
#> SRR1643488     2   0.000      1.000 0.000  1 0.000
#> SRR1643489     2   0.000      1.000 0.000  1 0.000
#> SRR1643490     2   0.000      1.000 0.000  1 0.000
#> SRR1643491     2   0.000      1.000 0.000  1 0.000
#> SRR1643492     2   0.000      1.000 0.000  1 0.000
#> SRR1643493     2   0.000      1.000 0.000  1 0.000
#> SRR1643494     2   0.000      1.000 0.000  1 0.000
#> SRR1643495     2   0.000      1.000 0.000  1 0.000
#> SRR1643496     2   0.000      1.000 0.000  1 0.000
#> SRR1643497     2   0.000      1.000 0.000  1 0.000
#> SRR1643498     2   0.000      1.000 0.000  1 0.000
#> SRR1643499     2   0.000      1.000 0.000  1 0.000
#> SRR1643500     2   0.000      1.000 0.000  1 0.000
#> SRR1643501     2   0.000      1.000 0.000  1 0.000
#> SRR1643502     2   0.000      1.000 0.000  1 0.000
#> SRR1643503     2   0.000      1.000 0.000  1 0.000
#> SRR1643504     2   0.000      1.000 0.000  1 0.000
#> SRR1643505     2   0.000      1.000 0.000  1 0.000
#> SRR1643506     2   0.000      1.000 0.000  1 0.000
#> SRR1643507     2   0.000      1.000 0.000  1 0.000
#> SRR1643508     2   0.000      1.000 0.000  1 0.000
#> SRR1643509     2   0.000      1.000 0.000  1 0.000
#> SRR1643510     2   0.000      1.000 0.000  1 0.000
#> SRR1643511     2   0.000      1.000 0.000  1 0.000
#> SRR1643512     2   0.000      1.000 0.000  1 0.000
#> SRR1643513     2   0.000      1.000 0.000  1 0.000
#> SRR1643531     2   0.000      1.000 0.000  1 0.000
#> SRR1643532     2   0.000      1.000 0.000  1 0.000
#> SRR1643533     2   0.000      1.000 0.000  1 0.000
#> SRR1643534     2   0.000      1.000 0.000  1 0.000
#> SRR1643535     2   0.000      1.000 0.000  1 0.000
#> SRR1643536     2   0.000      1.000 0.000  1 0.000
#> SRR1643537     2   0.000      1.000 0.000  1 0.000
#> SRR1643538     2   0.000      1.000 0.000  1 0.000
#> SRR1643539     2   0.000      1.000 0.000  1 0.000
#> SRR1643540     2   0.000      1.000 0.000  1 0.000
#> SRR1643541     2   0.000      1.000 0.000  1 0.000
#> SRR1643542     2   0.000      1.000 0.000  1 0.000
#> SRR1643543     2   0.000      1.000 0.000  1 0.000
#> SRR1643544     2   0.000      1.000 0.000  1 0.000
#> SRR1643514     2   0.000      1.000 0.000  1 0.000
#> SRR1643515     2   0.000      1.000 0.000  1 0.000
#> SRR1643516     2   0.000      1.000 0.000  1 0.000
#> SRR1643517     2   0.000      1.000 0.000  1 0.000
#> SRR1643518     2   0.000      1.000 0.000  1 0.000
#> SRR1643519     2   0.000      1.000 0.000  1 0.000
#> SRR1643520     2   0.000      1.000 0.000  1 0.000
#> SRR1643521     2   0.000      1.000 0.000  1 0.000
#> SRR1643522     2   0.000      1.000 0.000  1 0.000
#> SRR1643523     2   0.000      1.000 0.000  1 0.000
#> SRR1643524     2   0.000      1.000 0.000  1 0.000
#> SRR1643525     2   0.000      1.000 0.000  1 0.000
#> SRR1643526     2   0.000      1.000 0.000  1 0.000
#> SRR1643527     2   0.000      1.000 0.000  1 0.000
#> SRR1643528     2   0.000      1.000 0.000  1 0.000
#> SRR1643529     2   0.000      1.000 0.000  1 0.000
#> SRR1643530     2   0.000      1.000 0.000  1 0.000
#> SRR1643545     2   0.000      1.000 0.000  1 0.000
#> SRR1643546     2   0.000      1.000 0.000  1 0.000
#> SRR1643547     2   0.000      1.000 0.000  1 0.000
#> SRR1643548     2   0.000      1.000 0.000  1 0.000
#> SRR1643549     2   0.000      1.000 0.000  1 0.000
#> SRR1643550     2   0.000      1.000 0.000  1 0.000
#> SRR1643551     2   0.000      1.000 0.000  1 0.000
#> SRR1643552     2   0.000      1.000 0.000  1 0.000
#> SRR1643553     2   0.000      1.000 0.000  1 0.000
#> SRR1643554     2   0.000      1.000 0.000  1 0.000
#> SRR1643555     2   0.000      1.000 0.000  1 0.000
#> SRR1643556     2   0.000      1.000 0.000  1 0.000
#> SRR1643558     2   0.000      1.000 0.000  1 0.000
#> SRR1643559     2   0.000      1.000 0.000  1 0.000
#> SRR1643560     2   0.000      1.000 0.000  1 0.000
#> SRR1643561     2   0.000      1.000 0.000  1 0.000
#> SRR1643562     2   0.000      1.000 0.000  1 0.000
#> SRR1643563     2   0.000      1.000 0.000  1 0.000
#> SRR1643564     2   0.000      1.000 0.000  1 0.000
#> SRR1643565     2   0.000      1.000 0.000  1 0.000
#> SRR1643566     2   0.000      1.000 0.000  1 0.000
#> SRR1643567     2   0.000      1.000 0.000  1 0.000
#> SRR1643568     2   0.000      1.000 0.000  1 0.000
#> SRR1643569     2   0.000      1.000 0.000  1 0.000
#> SRR1643570     2   0.000      1.000 0.000  1 0.000
#> SRR1643571     2   0.000      1.000 0.000  1 0.000
#> SRR1643572     2   0.000      1.000 0.000  1 0.000

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1 p2   p3    p4
#> SRR1643167     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643168     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643169     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643170     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643171     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643172     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643173     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643174     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643175     4  0.3486      0.814 0.188  0 0.00 0.812
#> SRR1643176     4  0.3123      0.849 0.156  0 0.00 0.844
#> SRR1643177     4  0.2868      0.868 0.136  0 0.00 0.864
#> SRR1643178     4  0.2814      0.871 0.132  0 0.00 0.868
#> SRR1643180     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643181     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643182     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643183     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643184     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643185     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643186     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643187     1  0.2814      0.827 0.868  0 0.00 0.132
#> SRR1643188     1  0.2530      0.844 0.888  0 0.00 0.112
#> SRR1643189     1  0.2704      0.834 0.876  0 0.00 0.124
#> SRR1643190     1  0.2589      0.839 0.884  0 0.00 0.116
#> SRR1643191     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643192     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643193     1  0.2704      0.830 0.876  0 0.00 0.124
#> SRR1643194     1  0.3172      0.795 0.840  0 0.00 0.160
#> SRR1643195     4  0.3311      0.831 0.172  0 0.00 0.828
#> SRR1643196     4  0.3266      0.835 0.168  0 0.00 0.832
#> SRR1643197     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643198     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643199     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643200     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643201     4  0.4855      0.395 0.400  0 0.00 0.600
#> SRR1643202     4  0.4855      0.395 0.400  0 0.00 0.600
#> SRR1643203     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643204     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643205     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643206     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643207     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643208     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643209     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643210     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643211     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643212     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643213     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643214     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643215     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643216     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643217     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643218     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643219     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643220     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643221     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643222     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643223     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643224     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643225     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643226     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643227     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643228     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643229     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643230     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643231     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643232     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643233     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643234     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643235     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643236     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643237     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643238     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643239     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643240     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643241     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643242     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643243     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643245     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643246     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643247     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643248     3  0.0000      0.996 0.000  0 1.00 0.000
#> SRR1643249     3  0.3400      0.772 0.180  0 0.82 0.000
#> SRR1643250     4  0.1118      0.930 0.036  0 0.00 0.964
#> SRR1643251     4  0.1557      0.921 0.056  0 0.00 0.944
#> SRR1643252     4  0.1302      0.927 0.044  0 0.00 0.956
#> SRR1643253     4  0.2011      0.908 0.080  0 0.00 0.920
#> SRR1643254     4  0.0707      0.937 0.020  0 0.00 0.980
#> SRR1643255     4  0.0592      0.938 0.016  0 0.00 0.984
#> SRR1643256     4  0.0592      0.938 0.016  0 0.00 0.984
#> SRR1643257     4  0.2149      0.903 0.088  0 0.00 0.912
#> SRR1643258     4  0.0817      0.935 0.024  0 0.00 0.976
#> SRR1643259     4  0.2081      0.905 0.084  0 0.00 0.916
#> SRR1643260     4  0.1637      0.919 0.060  0 0.00 0.940
#> SRR1643261     4  0.1940      0.910 0.076  0 0.00 0.924
#> SRR1643262     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643263     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643264     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643266     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643267     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643268     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643269     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643270     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643271     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643272     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643273     1  0.4624      0.529 0.660  0 0.00 0.340
#> SRR1643274     1  0.4624      0.529 0.660  0 0.00 0.340
#> SRR1643275     1  0.4624      0.529 0.660  0 0.00 0.340
#> SRR1643276     1  0.4624      0.529 0.660  0 0.00 0.340
#> SRR1643277     1  0.4624      0.529 0.660  0 0.00 0.340
#> SRR1643278     1  0.4624      0.529 0.660  0 0.00 0.340
#> SRR1643279     1  0.4697      0.491 0.644  0 0.00 0.356
#> SRR1643280     1  0.4624      0.529 0.660  0 0.00 0.340
#> SRR1643281     1  0.4624      0.529 0.660  0 0.00 0.340
#> SRR1643282     1  0.4624      0.529 0.660  0 0.00 0.340
#> SRR1643283     1  0.4624      0.529 0.660  0 0.00 0.340
#> SRR1643284     1  0.4624      0.529 0.660  0 0.00 0.340
#> SRR1643285     1  0.4624      0.529 0.660  0 0.00 0.340
#> SRR1643286     1  0.4624      0.529 0.660  0 0.00 0.340
#> SRR1643287     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643288     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643289     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643290     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643291     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643292     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643293     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643294     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643295     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643296     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643297     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643298     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643299     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643300     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643301     4  0.3311      0.831 0.172  0 0.00 0.828
#> SRR1643302     4  0.3311      0.831 0.172  0 0.00 0.828
#> SRR1643303     4  0.3311      0.831 0.172  0 0.00 0.828
#> SRR1643304     4  0.3311      0.831 0.172  0 0.00 0.828
#> SRR1643305     4  0.3311      0.831 0.172  0 0.00 0.828
#> SRR1643306     4  0.3311      0.831 0.172  0 0.00 0.828
#> SRR1643307     4  0.3311      0.831 0.172  0 0.00 0.828
#> SRR1643308     4  0.3311      0.831 0.172  0 0.00 0.828
#> SRR1643309     4  0.3311      0.831 0.172  0 0.00 0.828
#> SRR1643310     4  0.3311      0.831 0.172  0 0.00 0.828
#> SRR1643311     4  0.3311      0.831 0.172  0 0.00 0.828
#> SRR1643312     4  0.3311      0.831 0.172  0 0.00 0.828
#> SRR1643313     4  0.3311      0.831 0.172  0 0.00 0.828
#> SRR1643314     1  0.0921      0.907 0.972  0 0.00 0.028
#> SRR1643315     1  0.0188      0.920 0.996  0 0.00 0.004
#> SRR1643316     1  0.1792      0.880 0.932  0 0.00 0.068
#> SRR1643317     1  0.0817      0.909 0.976  0 0.00 0.024
#> SRR1643318     1  0.0188      0.920 0.996  0 0.00 0.004
#> SRR1643319     1  0.0469      0.916 0.988  0 0.00 0.012
#> SRR1643320     1  0.0921      0.907 0.972  0 0.00 0.028
#> SRR1643321     1  0.2216      0.861 0.908  0 0.00 0.092
#> SRR1643322     1  0.1389      0.894 0.952  0 0.00 0.048
#> SRR1643323     1  0.1867      0.877 0.928  0 0.00 0.072
#> SRR1643324     1  0.0921      0.907 0.972  0 0.00 0.028
#> SRR1643325     1  0.1716      0.883 0.936  0 0.00 0.064
#> SRR1643326     1  0.1940      0.873 0.924  0 0.00 0.076
#> SRR1643327     1  0.1302      0.897 0.956  0 0.00 0.044
#> SRR1643328     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643329     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643330     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643331     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643332     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643333     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643334     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643335     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643336     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643337     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643338     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643339     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643340     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643341     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643342     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643343     4  0.3074      0.853 0.152  0 0.00 0.848
#> SRR1643344     4  0.2704      0.876 0.124  0 0.00 0.876
#> SRR1643345     4  0.3311      0.833 0.172  0 0.00 0.828
#> SRR1643346     4  0.2921      0.866 0.140  0 0.00 0.860
#> SRR1643347     4  0.2589      0.884 0.116  0 0.00 0.884
#> SRR1643348     4  0.3123      0.852 0.156  0 0.00 0.844
#> SRR1643349     4  0.2081      0.906 0.084  0 0.00 0.916
#> SRR1643350     4  0.2647      0.881 0.120  0 0.00 0.880
#> SRR1643351     4  0.3123      0.850 0.156  0 0.00 0.844
#> SRR1643352     4  0.2921      0.866 0.140  0 0.00 0.860
#> SRR1643353     4  0.2081      0.905 0.084  0 0.00 0.916
#> SRR1643354     4  0.3356      0.829 0.176  0 0.00 0.824
#> SRR1643355     4  0.2469      0.889 0.108  0 0.00 0.892
#> SRR1643356     4  0.2469      0.888 0.108  0 0.00 0.892
#> SRR1643357     4  0.2530      0.887 0.112  0 0.00 0.888
#> SRR1643358     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643359     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643360     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643361     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643362     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643363     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643364     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643365     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643366     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643367     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643368     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643369     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643370     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643371     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643372     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643373     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643374     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643375     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643376     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643377     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643378     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643379     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643380     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643381     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643382     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643383     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643384     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643385     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643386     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643387     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643388     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643389     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643390     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643391     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643392     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643393     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643394     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643395     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643396     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643397     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643398     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643399     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643400     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643401     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643402     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643403     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643404     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643405     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643406     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643407     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643408     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643409     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643410     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643411     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643412     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643413     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643414     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643415     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643416     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643417     1  0.0000      0.922 1.000  0 0.00 0.000
#> SRR1643418     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643419     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643420     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643421     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643422     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643423     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643424     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643425     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643426     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643427     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643428     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643429     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643430     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643431     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643432     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643433     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643434     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643435     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643436     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643437     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643438     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643439     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643440     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643441     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643442     4  0.0000      0.943 0.000  0 0.00 1.000
#> SRR1643443     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643505     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1 0.00 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1 0.00 0.000

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1 p2   p3    p4    p5
#> SRR1643167     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643168     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643169     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643170     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643171     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643172     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643173     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643174     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643175     4  0.3888      0.788 0.064  0 0.00 0.800 0.136
#> SRR1643176     4  0.3970      0.769 0.056  0 0.00 0.788 0.156
#> SRR1643177     4  0.3835      0.775 0.048  0 0.00 0.796 0.156
#> SRR1643178     4  0.3578      0.808 0.048  0 0.00 0.820 0.132
#> SRR1643180     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643181     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643182     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643183     5  0.2966      0.963 0.184  0 0.00 0.000 0.816
#> SRR1643184     5  0.2966      0.963 0.184  0 0.00 0.000 0.816
#> SRR1643185     5  0.2966      0.963 0.184  0 0.00 0.000 0.816
#> SRR1643186     5  0.2966      0.963 0.184  0 0.00 0.000 0.816
#> SRR1643187     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643188     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643189     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643190     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643191     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643192     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643193     5  0.2813      0.947 0.168  0 0.00 0.000 0.832
#> SRR1643194     5  0.2813      0.947 0.168  0 0.00 0.000 0.832
#> SRR1643195     5  0.3283      0.743 0.028  0 0.00 0.140 0.832
#> SRR1643196     5  0.3283      0.743 0.028  0 0.00 0.140 0.832
#> SRR1643197     5  0.3177      0.965 0.208  0 0.00 0.000 0.792
#> SRR1643198     5  0.3177      0.965 0.208  0 0.00 0.000 0.792
#> SRR1643199     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643200     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643201     5  0.2970      0.947 0.168  0 0.00 0.004 0.828
#> SRR1643202     5  0.2930      0.942 0.164  0 0.00 0.004 0.832
#> SRR1643203     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643204     5  0.3109      0.973 0.200  0 0.00 0.000 0.800
#> SRR1643205     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643206     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643207     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643208     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643209     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643210     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643211     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643212     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643213     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643214     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643215     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643216     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643217     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643218     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643219     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643220     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643221     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643222     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643223     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643224     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643225     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643226     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643227     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643228     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643229     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643230     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643231     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643232     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643233     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643234     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643235     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643236     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643237     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643238     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643239     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643240     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643241     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643242     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643243     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643245     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643246     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643247     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643248     3  0.0000      0.993 0.000  0 1.00 0.000 0.000
#> SRR1643249     3  0.3895      0.536 0.000  0 0.68 0.000 0.320
#> SRR1643250     4  0.1485      0.931 0.020  0 0.00 0.948 0.032
#> SRR1643251     4  0.1836      0.926 0.036  0 0.00 0.932 0.032
#> SRR1643252     4  0.1579      0.930 0.024  0 0.00 0.944 0.032
#> SRR1643253     4  0.1836      0.926 0.036  0 0.00 0.932 0.032
#> SRR1643254     4  0.1386      0.933 0.016  0 0.00 0.952 0.032
#> SRR1643255     4  0.1281      0.933 0.012  0 0.00 0.956 0.032
#> SRR1643256     4  0.1281      0.933 0.012  0 0.00 0.956 0.032
#> SRR1643257     4  0.1915      0.925 0.040  0 0.00 0.928 0.032
#> SRR1643258     4  0.1386      0.933 0.016  0 0.00 0.952 0.032
#> SRR1643259     4  0.1992      0.923 0.044  0 0.00 0.924 0.032
#> SRR1643260     4  0.1836      0.926 0.036  0 0.00 0.932 0.032
#> SRR1643261     4  0.1836      0.926 0.036  0 0.00 0.932 0.032
#> SRR1643262     4  0.0880      0.935 0.000  0 0.00 0.968 0.032
#> SRR1643263     4  0.0880      0.935 0.000  0 0.00 0.968 0.032
#> SRR1643264     4  0.0880      0.935 0.000  0 0.00 0.968 0.032
#> SRR1643266     4  0.0880      0.935 0.000  0 0.00 0.968 0.032
#> SRR1643267     4  0.0880      0.935 0.000  0 0.00 0.968 0.032
#> SRR1643268     4  0.0880      0.935 0.000  0 0.00 0.968 0.032
#> SRR1643269     4  0.0880      0.935 0.000  0 0.00 0.968 0.032
#> SRR1643270     4  0.0880      0.935 0.000  0 0.00 0.968 0.032
#> SRR1643271     4  0.0880      0.935 0.000  0 0.00 0.968 0.032
#> SRR1643272     4  0.0880      0.935 0.000  0 0.00 0.968 0.032
#> SRR1643273     1  0.4583      0.596 0.672  0 0.00 0.296 0.032
#> SRR1643274     1  0.4583      0.596 0.672  0 0.00 0.296 0.032
#> SRR1643275     1  0.4583      0.596 0.672  0 0.00 0.296 0.032
#> SRR1643276     1  0.4583      0.596 0.672  0 0.00 0.296 0.032
#> SRR1643277     1  0.4583      0.596 0.672  0 0.00 0.296 0.032
#> SRR1643278     1  0.4583      0.596 0.672  0 0.00 0.296 0.032
#> SRR1643279     1  0.4623      0.585 0.664  0 0.00 0.304 0.032
#> SRR1643280     1  0.4583      0.596 0.672  0 0.00 0.296 0.032
#> SRR1643281     1  0.4583      0.596 0.672  0 0.00 0.296 0.032
#> SRR1643282     1  0.4583      0.596 0.672  0 0.00 0.296 0.032
#> SRR1643283     1  0.4583      0.596 0.672  0 0.00 0.296 0.032
#> SRR1643284     1  0.4603      0.591 0.668  0 0.00 0.300 0.032
#> SRR1643285     1  0.4583      0.596 0.672  0 0.00 0.296 0.032
#> SRR1643286     1  0.4583      0.596 0.672  0 0.00 0.296 0.032
#> SRR1643287     4  0.0963      0.935 0.000  0 0.00 0.964 0.036
#> SRR1643288     4  0.0963      0.935 0.000  0 0.00 0.964 0.036
#> SRR1643289     4  0.0963      0.935 0.000  0 0.00 0.964 0.036
#> SRR1643290     4  0.0963      0.935 0.000  0 0.00 0.964 0.036
#> SRR1643291     4  0.0963      0.935 0.000  0 0.00 0.964 0.036
#> SRR1643292     4  0.0963      0.935 0.000  0 0.00 0.964 0.036
#> SRR1643293     4  0.0963      0.935 0.000  0 0.00 0.964 0.036
#> SRR1643294     4  0.0963      0.935 0.000  0 0.00 0.964 0.036
#> SRR1643295     4  0.0963      0.935 0.000  0 0.00 0.964 0.036
#> SRR1643296     4  0.0963      0.935 0.000  0 0.00 0.964 0.036
#> SRR1643297     4  0.0963      0.935 0.000  0 0.00 0.964 0.036
#> SRR1643298     4  0.0963      0.935 0.000  0 0.00 0.964 0.036
#> SRR1643299     4  0.0963      0.935 0.000  0 0.00 0.964 0.036
#> SRR1643300     4  0.0963      0.935 0.000  0 0.00 0.964 0.036
#> SRR1643301     4  0.2209      0.916 0.056  0 0.00 0.912 0.032
#> SRR1643302     4  0.2209      0.916 0.056  0 0.00 0.912 0.032
#> SRR1643303     4  0.2209      0.916 0.056  0 0.00 0.912 0.032
#> SRR1643304     4  0.2209      0.916 0.056  0 0.00 0.912 0.032
#> SRR1643305     4  0.2209      0.916 0.056  0 0.00 0.912 0.032
#> SRR1643306     4  0.2209      0.916 0.056  0 0.00 0.912 0.032
#> SRR1643307     4  0.2209      0.916 0.056  0 0.00 0.912 0.032
#> SRR1643308     4  0.2209      0.916 0.056  0 0.00 0.912 0.032
#> SRR1643309     4  0.2209      0.916 0.056  0 0.00 0.912 0.032
#> SRR1643310     4  0.2209      0.916 0.056  0 0.00 0.912 0.032
#> SRR1643311     4  0.2209      0.916 0.056  0 0.00 0.912 0.032
#> SRR1643312     4  0.2209      0.916 0.056  0 0.00 0.912 0.032
#> SRR1643313     4  0.2209      0.916 0.056  0 0.00 0.912 0.032
#> SRR1643314     1  0.1211      0.858 0.960  0 0.00 0.016 0.024
#> SRR1643315     1  0.1281      0.856 0.956  0 0.00 0.012 0.032
#> SRR1643316     1  0.2067      0.833 0.920  0 0.00 0.048 0.032
#> SRR1643317     1  0.1399      0.854 0.952  0 0.00 0.020 0.028
#> SRR1643318     1  0.0865      0.863 0.972  0 0.00 0.004 0.024
#> SRR1643319     1  0.1012      0.863 0.968  0 0.00 0.012 0.020
#> SRR1643320     1  0.1211      0.859 0.960  0 0.00 0.016 0.024
#> SRR1643321     1  0.2535      0.808 0.892  0 0.00 0.076 0.032
#> SRR1643322     1  0.1992      0.836 0.924  0 0.00 0.044 0.032
#> SRR1643323     1  0.2209      0.825 0.912  0 0.00 0.056 0.032
#> SRR1643324     1  0.1399      0.854 0.952  0 0.00 0.020 0.028
#> SRR1643325     1  0.2208      0.820 0.908  0 0.00 0.072 0.020
#> SRR1643326     1  0.2409      0.814 0.900  0 0.00 0.068 0.032
#> SRR1643327     1  0.1753      0.844 0.936  0 0.00 0.032 0.032
#> SRR1643328     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643329     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643330     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643331     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643332     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643333     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643334     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643335     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643336     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643337     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643338     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643339     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643340     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643341     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643342     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643343     4  0.1270      0.925 0.052  0 0.00 0.948 0.000
#> SRR1643344     4  0.1197      0.926 0.048  0 0.00 0.952 0.000
#> SRR1643345     4  0.1410      0.921 0.060  0 0.00 0.940 0.000
#> SRR1643346     4  0.1544      0.917 0.068  0 0.00 0.932 0.000
#> SRR1643347     4  0.0963      0.931 0.036  0 0.00 0.964 0.000
#> SRR1643348     4  0.1544      0.918 0.068  0 0.00 0.932 0.000
#> SRR1643349     4  0.0963      0.931 0.036  0 0.00 0.964 0.000
#> SRR1643350     4  0.1341      0.924 0.056  0 0.00 0.944 0.000
#> SRR1643351     4  0.1341      0.924 0.056  0 0.00 0.944 0.000
#> SRR1643352     4  0.1544      0.917 0.068  0 0.00 0.932 0.000
#> SRR1643353     4  0.1121      0.929 0.044  0 0.00 0.956 0.000
#> SRR1643354     4  0.1410      0.921 0.060  0 0.00 0.940 0.000
#> SRR1643355     4  0.1043      0.930 0.040  0 0.00 0.960 0.000
#> SRR1643356     4  0.0963      0.931 0.036  0 0.00 0.964 0.000
#> SRR1643357     4  0.1043      0.930 0.040  0 0.00 0.960 0.000
#> SRR1643358     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643359     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643360     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643361     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643362     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643363     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643364     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643365     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643366     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643367     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643368     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643369     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643370     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643371     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643372     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643373     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643374     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643375     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643376     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643377     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643378     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643379     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643380     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643381     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643382     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643383     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643384     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643385     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643386     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643387     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643388     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643389     4  0.0000      0.936 0.000  0 0.00 1.000 0.000
#> SRR1643390     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643391     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643392     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643393     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643394     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643395     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643396     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643397     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643398     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643399     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643400     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643401     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643402     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643403     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643404     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643405     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643406     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643407     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643408     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643409     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643410     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643411     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643412     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643413     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643414     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643415     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643416     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643417     1  0.0000      0.875 1.000  0 0.00 0.000 0.000
#> SRR1643418     4  0.2852      0.855 0.000  0 0.00 0.828 0.172
#> SRR1643419     4  0.2852      0.855 0.000  0 0.00 0.828 0.172
#> SRR1643420     4  0.2966      0.856 0.000  0 0.00 0.816 0.184
#> SRR1643421     4  0.2929      0.856 0.000  0 0.00 0.820 0.180
#> SRR1643422     4  0.2813      0.854 0.000  0 0.00 0.832 0.168
#> SRR1643423     4  0.2852      0.855 0.000  0 0.00 0.828 0.172
#> SRR1643424     4  0.2852      0.855 0.000  0 0.00 0.828 0.172
#> SRR1643425     4  0.2852      0.855 0.000  0 0.00 0.828 0.172
#> SRR1643426     4  0.2929      0.856 0.000  0 0.00 0.820 0.180
#> SRR1643427     4  0.3003      0.856 0.000  0 0.00 0.812 0.188
#> SRR1643428     4  0.2929      0.856 0.000  0 0.00 0.820 0.180
#> SRR1643429     4  0.2852      0.855 0.000  0 0.00 0.828 0.172
#> SRR1643430     4  0.2813      0.854 0.000  0 0.00 0.832 0.168
#> SRR1643431     4  0.2813      0.854 0.000  0 0.00 0.832 0.168
#> SRR1643432     4  0.2813      0.854 0.000  0 0.00 0.832 0.168
#> SRR1643433     4  0.2813      0.854 0.000  0 0.00 0.832 0.168
#> SRR1643434     4  0.2813      0.854 0.000  0 0.00 0.832 0.168
#> SRR1643435     4  0.2813      0.854 0.000  0 0.00 0.832 0.168
#> SRR1643436     4  0.2813      0.854 0.000  0 0.00 0.832 0.168
#> SRR1643437     4  0.2813      0.854 0.000  0 0.00 0.832 0.168
#> SRR1643438     4  0.2813      0.854 0.000  0 0.00 0.832 0.168
#> SRR1643439     4  0.2813      0.854 0.000  0 0.00 0.832 0.168
#> SRR1643440     4  0.2813      0.854 0.000  0 0.00 0.832 0.168
#> SRR1643441     4  0.2813      0.854 0.000  0 0.00 0.832 0.168
#> SRR1643442     4  0.2813      0.854 0.000  0 0.00 0.832 0.168
#> SRR1643443     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643505     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1 0.00 0.000 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1 0.00 0.000 0.000

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2   p3    p4    p5    p6
#> SRR1643167     6  0.2378      0.932 0.152 0.000 0.00 0.000 0.000 0.848
#> SRR1643168     6  0.2135      0.943 0.128 0.000 0.00 0.000 0.000 0.872
#> SRR1643169     6  0.2219      0.940 0.136 0.000 0.00 0.000 0.000 0.864
#> SRR1643170     6  0.2135      0.943 0.128 0.000 0.00 0.000 0.000 0.872
#> SRR1643171     6  0.2048      0.943 0.120 0.000 0.00 0.000 0.000 0.880
#> SRR1643172     6  0.2048      0.943 0.120 0.000 0.00 0.000 0.000 0.880
#> SRR1643173     6  0.2048      0.943 0.120 0.000 0.00 0.000 0.000 0.880
#> SRR1643174     6  0.2048      0.943 0.120 0.000 0.00 0.000 0.000 0.880
#> SRR1643175     4  0.3834      0.599 0.024 0.000 0.00 0.708 0.000 0.268
#> SRR1643176     4  0.3879      0.560 0.020 0.000 0.00 0.688 0.000 0.292
#> SRR1643177     4  0.3778      0.571 0.016 0.000 0.00 0.696 0.000 0.288
#> SRR1643178     4  0.3518      0.630 0.012 0.000 0.00 0.732 0.000 0.256
#> SRR1643180     6  0.2416      0.930 0.156 0.000 0.00 0.000 0.000 0.844
#> SRR1643181     6  0.2416      0.930 0.156 0.000 0.00 0.000 0.000 0.844
#> SRR1643182     6  0.2416      0.930 0.156 0.000 0.00 0.000 0.000 0.844
#> SRR1643183     6  0.1765      0.930 0.096 0.000 0.00 0.000 0.000 0.904
#> SRR1643184     6  0.1663      0.923 0.088 0.000 0.00 0.000 0.000 0.912
#> SRR1643185     6  0.1814      0.933 0.100 0.000 0.00 0.000 0.000 0.900
#> SRR1643186     6  0.1765      0.930 0.096 0.000 0.00 0.000 0.000 0.904
#> SRR1643187     6  0.2664      0.905 0.184 0.000 0.00 0.000 0.000 0.816
#> SRR1643188     6  0.2664      0.905 0.184 0.000 0.00 0.000 0.000 0.816
#> SRR1643189     6  0.2664      0.905 0.184 0.000 0.00 0.000 0.000 0.816
#> SRR1643190     6  0.2664      0.905 0.184 0.000 0.00 0.000 0.000 0.816
#> SRR1643191     6  0.2048      0.943 0.120 0.000 0.00 0.000 0.000 0.880
#> SRR1643192     6  0.2048      0.943 0.120 0.000 0.00 0.000 0.000 0.880
#> SRR1643193     6  0.1007      0.876 0.044 0.000 0.00 0.000 0.000 0.956
#> SRR1643194     6  0.1007      0.876 0.044 0.000 0.00 0.000 0.000 0.956
#> SRR1643195     6  0.0363      0.801 0.000 0.000 0.00 0.012 0.000 0.988
#> SRR1643196     6  0.0363      0.801 0.000 0.000 0.00 0.012 0.000 0.988
#> SRR1643197     6  0.2135      0.940 0.128 0.000 0.00 0.000 0.000 0.872
#> SRR1643198     6  0.2135      0.940 0.128 0.000 0.00 0.000 0.000 0.872
#> SRR1643199     6  0.2178      0.942 0.132 0.000 0.00 0.000 0.000 0.868
#> SRR1643200     6  0.2135      0.943 0.128 0.000 0.00 0.000 0.000 0.872
#> SRR1643201     6  0.1267      0.895 0.060 0.000 0.00 0.000 0.000 0.940
#> SRR1643202     6  0.1204      0.890 0.056 0.000 0.00 0.000 0.000 0.944
#> SRR1643203     6  0.2664      0.905 0.184 0.000 0.00 0.000 0.000 0.816
#> SRR1643204     6  0.2664      0.905 0.184 0.000 0.00 0.000 0.000 0.816
#> SRR1643205     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643206     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643207     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643208     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643209     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643210     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643211     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643212     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643213     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643214     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643215     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643216     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643217     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643218     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643219     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643220     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643221     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643222     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643223     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643224     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643225     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643226     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643227     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643228     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643229     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643230     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643231     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643232     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643233     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643234     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643235     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643236     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643237     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643238     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643239     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643240     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643241     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643242     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643243     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643245     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643246     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643247     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643248     3  0.0000      0.992 0.000 0.000 1.00 0.000 0.000 0.000
#> SRR1643249     3  0.3499      0.523 0.000 0.000 0.68 0.000 0.000 0.320
#> SRR1643250     4  0.2389      0.892 0.008 0.000 0.00 0.864 0.000 0.128
#> SRR1643251     4  0.2692      0.885 0.012 0.000 0.00 0.840 0.000 0.148
#> SRR1643252     4  0.2442      0.889 0.004 0.000 0.00 0.852 0.000 0.144
#> SRR1643253     4  0.2653      0.887 0.012 0.000 0.00 0.844 0.000 0.144
#> SRR1643254     4  0.2362      0.891 0.004 0.000 0.00 0.860 0.000 0.136
#> SRR1643255     4  0.2320      0.892 0.004 0.000 0.00 0.864 0.000 0.132
#> SRR1643256     4  0.2320      0.892 0.004 0.000 0.00 0.864 0.000 0.132
#> SRR1643257     4  0.2593      0.887 0.008 0.000 0.00 0.844 0.000 0.148
#> SRR1643258     4  0.2320      0.892 0.004 0.000 0.00 0.864 0.000 0.132
#> SRR1643259     4  0.2768      0.882 0.012 0.000 0.00 0.832 0.000 0.156
#> SRR1643260     4  0.2706      0.882 0.008 0.000 0.00 0.832 0.000 0.160
#> SRR1643261     4  0.2730      0.884 0.012 0.000 0.00 0.836 0.000 0.152
#> SRR1643262     4  0.2048      0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643263     4  0.2048      0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643264     4  0.2048      0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643266     4  0.2048      0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643267     4  0.2048      0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643268     4  0.2048      0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643269     4  0.2048      0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643270     4  0.2048      0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643271     4  0.2048      0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643272     4  0.2048      0.893 0.000 0.000 0.00 0.880 0.000 0.120
#> SRR1643273     1  0.5480      0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643274     1  0.5480      0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643275     1  0.5480      0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643276     1  0.5497      0.525 0.560 0.000 0.00 0.256 0.000 0.184
#> SRR1643277     1  0.5480      0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643278     1  0.5480      0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643279     1  0.5548      0.498 0.548 0.000 0.00 0.268 0.000 0.184
#> SRR1643280     1  0.5480      0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643281     1  0.5480      0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643282     1  0.5480      0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643283     1  0.5480      0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643284     1  0.5497      0.524 0.560 0.000 0.00 0.256 0.000 0.184
#> SRR1643285     1  0.5480      0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643286     1  0.5480      0.533 0.564 0.000 0.00 0.252 0.000 0.184
#> SRR1643287     4  0.2402      0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643288     4  0.2357      0.893 0.000 0.000 0.00 0.872 0.012 0.116
#> SRR1643289     4  0.2402      0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643290     4  0.2357      0.893 0.000 0.000 0.00 0.872 0.012 0.116
#> SRR1643291     4  0.2402      0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643292     4  0.2402      0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643293     4  0.2402      0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643294     4  0.2302      0.892 0.000 0.000 0.00 0.872 0.008 0.120
#> SRR1643295     4  0.2402      0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643296     4  0.2302      0.892 0.000 0.000 0.00 0.872 0.008 0.120
#> SRR1643297     4  0.2402      0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643298     4  0.2402      0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643299     4  0.2402      0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643300     4  0.2402      0.892 0.000 0.000 0.00 0.868 0.012 0.120
#> SRR1643301     4  0.3189      0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643302     4  0.3189      0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643303     4  0.3189      0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643304     4  0.3189      0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643305     4  0.3189      0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643306     4  0.3189      0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643307     4  0.3189      0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643308     4  0.3189      0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643309     4  0.3189      0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643310     4  0.3189      0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643311     4  0.3189      0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643312     4  0.3189      0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643313     4  0.3189      0.862 0.020 0.000 0.00 0.796 0.000 0.184
#> SRR1643314     1  0.2003      0.799 0.884 0.000 0.00 0.000 0.000 0.116
#> SRR1643315     1  0.2784      0.784 0.848 0.000 0.00 0.028 0.000 0.124
#> SRR1643316     1  0.3432      0.755 0.800 0.000 0.00 0.052 0.000 0.148
#> SRR1643317     1  0.2431      0.790 0.860 0.000 0.00 0.008 0.000 0.132
#> SRR1643318     1  0.2118      0.801 0.888 0.000 0.00 0.008 0.000 0.104
#> SRR1643319     1  0.2301      0.800 0.884 0.000 0.00 0.020 0.000 0.096
#> SRR1643320     1  0.2651      0.790 0.860 0.000 0.00 0.028 0.000 0.112
#> SRR1643321     1  0.3821      0.732 0.772 0.000 0.00 0.080 0.000 0.148
#> SRR1643322     1  0.3570      0.749 0.792 0.000 0.00 0.064 0.000 0.144
#> SRR1643323     1  0.3746      0.738 0.780 0.000 0.00 0.080 0.000 0.140
#> SRR1643324     1  0.2446      0.791 0.864 0.000 0.00 0.012 0.000 0.124
#> SRR1643325     1  0.3254      0.768 0.820 0.000 0.00 0.056 0.000 0.124
#> SRR1643326     1  0.3247      0.761 0.808 0.000 0.00 0.036 0.000 0.156
#> SRR1643327     1  0.3108      0.772 0.828 0.000 0.00 0.044 0.000 0.128
#> SRR1643328     1  0.0146      0.838 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643329     1  0.0632      0.833 0.976 0.000 0.00 0.000 0.000 0.024
#> SRR1643330     1  0.0363      0.837 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643331     1  0.0547      0.834 0.980 0.000 0.00 0.000 0.000 0.020
#> SRR1643332     1  0.0547      0.834 0.980 0.000 0.00 0.000 0.000 0.020
#> SRR1643333     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643334     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643335     1  0.0547      0.834 0.980 0.000 0.00 0.000 0.000 0.020
#> SRR1643336     1  0.0713      0.831 0.972 0.000 0.00 0.000 0.000 0.028
#> SRR1643337     1  0.0363      0.837 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643338     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643339     1  0.0363      0.837 0.988 0.000 0.00 0.000 0.000 0.012
#> SRR1643340     1  0.0632      0.833 0.976 0.000 0.00 0.000 0.000 0.024
#> SRR1643341     1  0.0260      0.838 0.992 0.000 0.00 0.000 0.000 0.008
#> SRR1643342     1  0.0146      0.838 0.996 0.000 0.00 0.000 0.000 0.004
#> SRR1643343     4  0.1779      0.874 0.016 0.000 0.00 0.920 0.000 0.064
#> SRR1643344     4  0.1779      0.874 0.016 0.000 0.00 0.920 0.000 0.064
#> SRR1643345     4  0.1926      0.874 0.020 0.000 0.00 0.912 0.000 0.068
#> SRR1643346     4  0.1686      0.876 0.012 0.000 0.00 0.924 0.000 0.064
#> SRR1643347     4  0.1531      0.880 0.004 0.000 0.00 0.928 0.000 0.068
#> SRR1643348     4  0.1779      0.875 0.016 0.000 0.00 0.920 0.000 0.064
#> SRR1643349     4  0.1267      0.881 0.000 0.000 0.00 0.940 0.000 0.060
#> SRR1643350     4  0.1867      0.873 0.020 0.000 0.00 0.916 0.000 0.064
#> SRR1643351     4  0.1838      0.875 0.016 0.000 0.00 0.916 0.000 0.068
#> SRR1643352     4  0.1584      0.877 0.008 0.000 0.00 0.928 0.000 0.064
#> SRR1643353     4  0.1471      0.879 0.004 0.000 0.00 0.932 0.000 0.064
#> SRR1643354     4  0.1926      0.874 0.020 0.000 0.00 0.912 0.000 0.068
#> SRR1643355     4  0.1584      0.877 0.008 0.000 0.00 0.928 0.000 0.064
#> SRR1643356     4  0.1471      0.879 0.004 0.000 0.00 0.932 0.000 0.064
#> SRR1643357     4  0.1471      0.879 0.004 0.000 0.00 0.932 0.000 0.064
#> SRR1643358     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643359     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643360     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643361     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643362     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643363     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643364     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643365     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643366     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643367     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643368     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643369     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643370     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643371     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643372     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643373     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643374     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643375     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643376     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643377     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643378     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643379     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643380     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643381     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643382     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643383     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643384     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643385     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643386     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643387     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643388     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643389     4  0.0000      0.888 0.000 0.000 0.00 1.000 0.000 0.000
#> SRR1643390     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643391     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643392     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643393     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643394     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643395     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643396     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643397     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643398     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643399     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643400     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643401     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643402     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643403     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643404     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643405     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643406     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643407     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643408     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643409     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643410     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643411     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643412     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643413     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643414     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643415     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643416     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643417     1  0.0000      0.839 1.000 0.000 0.00 0.000 0.000 0.000
#> SRR1643418     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643419     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643420     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643421     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643422     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643423     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643424     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643425     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643426     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643427     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643428     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643429     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643430     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643431     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643432     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643433     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643434     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643435     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643436     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643437     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643438     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643439     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643440     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643441     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643442     5  0.2260      1.000 0.000 0.000 0.00 0.140 0.860 0.000
#> SRR1643443     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643444     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643445     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643446     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643447     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643448     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643449     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643450     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643451     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643452     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643453     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643454     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643455     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643456     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643457     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643458     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643459     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643460     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643461     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643462     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643463     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643464     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643466     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643467     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643468     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643469     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643470     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643471     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643472     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643473     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643474     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643475     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643477     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643478     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643479     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643480     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643481     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643482     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643483     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643484     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643485     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643486     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643487     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643488     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643489     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643490     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643491     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643492     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643493     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643494     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643495     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643496     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643497     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643498     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643499     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643500     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643501     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643502     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643503     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643504     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643505     2  0.0713      0.929 0.000 0.972 0.00 0.000 0.028 0.000
#> SRR1643506     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643507     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643508     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643509     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643510     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643511     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643512     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643513     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643531     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643532     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643533     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643534     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643535     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643536     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643537     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643538     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643539     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643540     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643541     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643542     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643543     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643544     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643514     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643515     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643516     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643517     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643518     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643519     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643520     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643521     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643522     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643523     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643524     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643525     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643526     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643527     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643528     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643529     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643530     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643545     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643546     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643547     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643548     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643549     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643550     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643551     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643552     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643553     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643554     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643555     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643556     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643558     2  0.2260      0.938 0.000 0.860 0.00 0.000 0.140 0.000
#> SRR1643559     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643560     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643561     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643562     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643563     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643564     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643565     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643566     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643567     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643568     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643569     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643570     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643571     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000
#> SRR1643572     2  0.0000      0.927 0.000 1.000 0.00 0.000 0.000 0.000

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-MAD-pam-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-MAD-pam-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-MAD-pam-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-MAD-pam-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-MAD-pam-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-MAD-pam-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-MAD-pam-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-MAD-pam-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-MAD-pam-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-MAD-pam-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-MAD-pam-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-MAD-pam-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-MAD-pam-get-signatures-3

get_signatures(res, k = 5)

plot of chunk tab-MAD-pam-get-signatures-4

get_signatures(res, k = 6)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-MAD-pam-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-MAD-pam-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-MAD-pam-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-MAD-pam-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)

plot of chunk tab-MAD-pam-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-MAD-pam-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk MAD-pam-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-MAD-pam-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-MAD-pam-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-MAD-pam-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-MAD-pam-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-MAD-pam-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk MAD-pam-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


MAD:mclust*

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["MAD", "mclust"]
# you can also extract it by
# res = res_list["MAD:mclust"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'MAD' method.
#>   Subgroups are detected by 'mclust' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 6.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk MAD-mclust-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk MAD-mclust-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000         0.4350 0.566   0.566
#> 3 3 0.684           0.887       0.908         0.3615 0.874   0.777
#> 4 4 0.989           0.966       0.982         0.2105 0.840   0.637
#> 5 5 0.922           0.943       0.958         0.0698 0.929   0.755
#> 6 6 0.931           0.886       0.930         0.0383 0.966   0.852

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 6
#> attr(,"optional")
#> [1] 2 4 5

There is also optional best \(k\) = 2 4 5 that is worth to check.

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1 p2    p3
#> SRR1643167     1  0.6192      0.567 0.580  0 0.420
#> SRR1643168     1  0.6192      0.567 0.580  0 0.420
#> SRR1643169     1  0.6192      0.567 0.580  0 0.420
#> SRR1643170     1  0.6192      0.567 0.580  0 0.420
#> SRR1643171     1  0.6154      0.586 0.592  0 0.408
#> SRR1643172     1  0.6140      0.592 0.596  0 0.404
#> SRR1643173     1  0.6154      0.586 0.592  0 0.408
#> SRR1643174     1  0.6154      0.586 0.592  0 0.408
#> SRR1643175     1  0.2796      0.836 0.908  0 0.092
#> SRR1643176     1  0.2878      0.834 0.904  0 0.096
#> SRR1643177     1  0.2796      0.836 0.908  0 0.092
#> SRR1643178     1  0.2711      0.836 0.912  0 0.088
#> SRR1643180     1  0.6192      0.567 0.580  0 0.420
#> SRR1643181     1  0.6192      0.567 0.580  0 0.420
#> SRR1643182     1  0.6192      0.567 0.580  0 0.420
#> SRR1643183     1  0.6192      0.567 0.580  0 0.420
#> SRR1643184     1  0.6192      0.567 0.580  0 0.420
#> SRR1643185     1  0.6192      0.567 0.580  0 0.420
#> SRR1643186     1  0.6192      0.567 0.580  0 0.420
#> SRR1643187     1  0.6192      0.567 0.580  0 0.420
#> SRR1643188     1  0.6192      0.567 0.580  0 0.420
#> SRR1643189     1  0.6192      0.567 0.580  0 0.420
#> SRR1643190     1  0.6192      0.567 0.580  0 0.420
#> SRR1643191     1  0.5431      0.741 0.716  0 0.284
#> SRR1643192     1  0.5431      0.741 0.716  0 0.284
#> SRR1643193     1  0.6192      0.567 0.580  0 0.420
#> SRR1643194     1  0.6192      0.567 0.580  0 0.420
#> SRR1643195     1  0.5098      0.682 0.752  0 0.248
#> SRR1643196     1  0.5098      0.682 0.752  0 0.248
#> SRR1643197     1  0.5216      0.762 0.740  0 0.260
#> SRR1643198     1  0.5216      0.762 0.740  0 0.260
#> SRR1643199     1  0.6192      0.567 0.580  0 0.420
#> SRR1643200     1  0.6192      0.567 0.580  0 0.420
#> SRR1643201     1  0.6192      0.567 0.580  0 0.420
#> SRR1643202     1  0.6192      0.567 0.580  0 0.420
#> SRR1643203     1  0.6192      0.567 0.580  0 0.420
#> SRR1643204     1  0.6192      0.567 0.580  0 0.420
#> SRR1643205     3  0.3816      1.000 0.148  0 0.852
#> SRR1643206     3  0.3816      1.000 0.148  0 0.852
#> SRR1643207     3  0.3816      1.000 0.148  0 0.852
#> SRR1643208     3  0.3816      1.000 0.148  0 0.852
#> SRR1643209     3  0.3816      1.000 0.148  0 0.852
#> SRR1643210     3  0.3816      1.000 0.148  0 0.852
#> SRR1643211     3  0.3816      1.000 0.148  0 0.852
#> SRR1643212     3  0.3816      1.000 0.148  0 0.852
#> SRR1643213     3  0.3816      1.000 0.148  0 0.852
#> SRR1643214     3  0.3816      1.000 0.148  0 0.852
#> SRR1643215     3  0.3816      1.000 0.148  0 0.852
#> SRR1643216     3  0.3816      1.000 0.148  0 0.852
#> SRR1643217     3  0.3816      1.000 0.148  0 0.852
#> SRR1643218     3  0.3816      1.000 0.148  0 0.852
#> SRR1643219     3  0.3816      1.000 0.148  0 0.852
#> SRR1643220     3  0.3816      1.000 0.148  0 0.852
#> SRR1643221     3  0.3816      1.000 0.148  0 0.852
#> SRR1643222     3  0.3816      1.000 0.148  0 0.852
#> SRR1643223     3  0.3816      1.000 0.148  0 0.852
#> SRR1643224     3  0.3816      1.000 0.148  0 0.852
#> SRR1643225     3  0.3816      1.000 0.148  0 0.852
#> SRR1643226     3  0.3816      1.000 0.148  0 0.852
#> SRR1643227     3  0.3816      1.000 0.148  0 0.852
#> SRR1643228     3  0.3816      1.000 0.148  0 0.852
#> SRR1643229     3  0.3816      1.000 0.148  0 0.852
#> SRR1643230     3  0.3816      1.000 0.148  0 0.852
#> SRR1643231     3  0.3816      1.000 0.148  0 0.852
#> SRR1643232     3  0.3816      1.000 0.148  0 0.852
#> SRR1643233     3  0.3816      1.000 0.148  0 0.852
#> SRR1643234     3  0.3816      1.000 0.148  0 0.852
#> SRR1643235     3  0.3816      1.000 0.148  0 0.852
#> SRR1643236     3  0.3816      1.000 0.148  0 0.852
#> SRR1643237     3  0.3816      1.000 0.148  0 0.852
#> SRR1643238     3  0.3816      1.000 0.148  0 0.852
#> SRR1643239     3  0.3816      1.000 0.148  0 0.852
#> SRR1643240     3  0.3816      1.000 0.148  0 0.852
#> SRR1643241     3  0.3816      1.000 0.148  0 0.852
#> SRR1643242     3  0.3816      1.000 0.148  0 0.852
#> SRR1643243     3  0.3816      1.000 0.148  0 0.852
#> SRR1643245     3  0.3816      1.000 0.148  0 0.852
#> SRR1643246     3  0.3816      1.000 0.148  0 0.852
#> SRR1643247     3  0.3816      1.000 0.148  0 0.852
#> SRR1643248     3  0.3816      1.000 0.148  0 0.852
#> SRR1643249     3  0.3816      1.000 0.148  0 0.852
#> SRR1643250     1  0.0000      0.866 1.000  0 0.000
#> SRR1643251     1  0.0000      0.866 1.000  0 0.000
#> SRR1643252     1  0.0000      0.866 1.000  0 0.000
#> SRR1643253     1  0.0000      0.866 1.000  0 0.000
#> SRR1643254     1  0.0000      0.866 1.000  0 0.000
#> SRR1643255     1  0.0000      0.866 1.000  0 0.000
#> SRR1643256     1  0.0000      0.866 1.000  0 0.000
#> SRR1643257     1  0.0000      0.866 1.000  0 0.000
#> SRR1643258     1  0.0000      0.866 1.000  0 0.000
#> SRR1643259     1  0.0000      0.866 1.000  0 0.000
#> SRR1643260     1  0.0000      0.866 1.000  0 0.000
#> SRR1643261     1  0.0000      0.866 1.000  0 0.000
#> SRR1643262     1  0.0000      0.866 1.000  0 0.000
#> SRR1643263     1  0.0000      0.866 1.000  0 0.000
#> SRR1643264     1  0.0000      0.866 1.000  0 0.000
#> SRR1643266     1  0.0000      0.866 1.000  0 0.000
#> SRR1643267     1  0.0000      0.866 1.000  0 0.000
#> SRR1643268     1  0.0000      0.866 1.000  0 0.000
#> SRR1643269     1  0.0000      0.866 1.000  0 0.000
#> SRR1643270     1  0.0000      0.866 1.000  0 0.000
#> SRR1643271     1  0.0000      0.866 1.000  0 0.000
#> SRR1643272     1  0.0000      0.866 1.000  0 0.000
#> SRR1643273     1  0.0000      0.866 1.000  0 0.000
#> SRR1643274     1  0.0000      0.866 1.000  0 0.000
#> SRR1643275     1  0.0000      0.866 1.000  0 0.000
#> SRR1643276     1  0.0000      0.866 1.000  0 0.000
#> SRR1643277     1  0.0000      0.866 1.000  0 0.000
#> SRR1643278     1  0.0000      0.866 1.000  0 0.000
#> SRR1643279     1  0.0000      0.866 1.000  0 0.000
#> SRR1643280     1  0.0000      0.866 1.000  0 0.000
#> SRR1643281     1  0.0000      0.866 1.000  0 0.000
#> SRR1643282     1  0.0000      0.866 1.000  0 0.000
#> SRR1643283     1  0.0000      0.866 1.000  0 0.000
#> SRR1643284     1  0.0000      0.866 1.000  0 0.000
#> SRR1643285     1  0.0000      0.866 1.000  0 0.000
#> SRR1643286     1  0.0000      0.866 1.000  0 0.000
#> SRR1643287     1  0.0000      0.866 1.000  0 0.000
#> SRR1643288     1  0.0000      0.866 1.000  0 0.000
#> SRR1643289     1  0.0000      0.866 1.000  0 0.000
#> SRR1643290     1  0.0000      0.866 1.000  0 0.000
#> SRR1643291     1  0.0000      0.866 1.000  0 0.000
#> SRR1643292     1  0.0000      0.866 1.000  0 0.000
#> SRR1643293     1  0.0000      0.866 1.000  0 0.000
#> SRR1643294     1  0.0000      0.866 1.000  0 0.000
#> SRR1643295     1  0.0000      0.866 1.000  0 0.000
#> SRR1643296     1  0.0000      0.866 1.000  0 0.000
#> SRR1643297     1  0.0000      0.866 1.000  0 0.000
#> SRR1643298     1  0.0000      0.866 1.000  0 0.000
#> SRR1643299     1  0.0000      0.866 1.000  0 0.000
#> SRR1643300     1  0.0000      0.866 1.000  0 0.000
#> SRR1643301     1  0.0000      0.866 1.000  0 0.000
#> SRR1643302     1  0.0000      0.866 1.000  0 0.000
#> SRR1643303     1  0.0000      0.866 1.000  0 0.000
#> SRR1643304     1  0.0000      0.866 1.000  0 0.000
#> SRR1643305     1  0.0000      0.866 1.000  0 0.000
#> SRR1643306     1  0.0000      0.866 1.000  0 0.000
#> SRR1643307     1  0.0000      0.866 1.000  0 0.000
#> SRR1643308     1  0.0000      0.866 1.000  0 0.000
#> SRR1643309     1  0.0000      0.866 1.000  0 0.000
#> SRR1643310     1  0.0000      0.866 1.000  0 0.000
#> SRR1643311     1  0.0000      0.866 1.000  0 0.000
#> SRR1643312     1  0.0000      0.866 1.000  0 0.000
#> SRR1643313     1  0.0000      0.866 1.000  0 0.000
#> SRR1643314     1  0.0424      0.865 0.992  0 0.008
#> SRR1643315     1  0.0424      0.865 0.992  0 0.008
#> SRR1643316     1  0.0424      0.865 0.992  0 0.008
#> SRR1643317     1  0.0424      0.865 0.992  0 0.008
#> SRR1643318     1  0.0424      0.865 0.992  0 0.008
#> SRR1643319     1  0.0424      0.865 0.992  0 0.008
#> SRR1643320     1  0.0424      0.865 0.992  0 0.008
#> SRR1643321     1  0.0424      0.865 0.992  0 0.008
#> SRR1643322     1  0.0424      0.865 0.992  0 0.008
#> SRR1643323     1  0.0424      0.865 0.992  0 0.008
#> SRR1643324     1  0.0424      0.865 0.992  0 0.008
#> SRR1643325     1  0.0424      0.865 0.992  0 0.008
#> SRR1643326     1  0.0424      0.865 0.992  0 0.008
#> SRR1643327     1  0.0424      0.865 0.992  0 0.008
#> SRR1643328     1  0.5216      0.762 0.740  0 0.260
#> SRR1643329     1  0.5216      0.762 0.740  0 0.260
#> SRR1643330     1  0.5216      0.762 0.740  0 0.260
#> SRR1643331     1  0.5216      0.762 0.740  0 0.260
#> SRR1643332     1  0.5216      0.762 0.740  0 0.260
#> SRR1643333     1  0.5216      0.762 0.740  0 0.260
#> SRR1643334     1  0.5216      0.762 0.740  0 0.260
#> SRR1643335     1  0.5216      0.762 0.740  0 0.260
#> SRR1643336     1  0.5216      0.762 0.740  0 0.260
#> SRR1643337     1  0.5216      0.762 0.740  0 0.260
#> SRR1643338     1  0.5216      0.762 0.740  0 0.260
#> SRR1643339     1  0.5216      0.762 0.740  0 0.260
#> SRR1643340     1  0.5216      0.762 0.740  0 0.260
#> SRR1643341     1  0.5216      0.762 0.740  0 0.260
#> SRR1643342     1  0.5216      0.762 0.740  0 0.260
#> SRR1643343     1  0.3192      0.822 0.888  0 0.112
#> SRR1643344     1  0.3192      0.822 0.888  0 0.112
#> SRR1643345     1  0.3192      0.822 0.888  0 0.112
#> SRR1643346     1  0.3192      0.822 0.888  0 0.112
#> SRR1643347     1  0.3192      0.822 0.888  0 0.112
#> SRR1643348     1  0.3192      0.822 0.888  0 0.112
#> SRR1643349     1  0.3192      0.822 0.888  0 0.112
#> SRR1643350     1  0.3192      0.822 0.888  0 0.112
#> SRR1643351     1  0.3192      0.822 0.888  0 0.112
#> SRR1643352     1  0.3192      0.822 0.888  0 0.112
#> SRR1643353     1  0.3192      0.822 0.888  0 0.112
#> SRR1643354     1  0.3192      0.822 0.888  0 0.112
#> SRR1643355     1  0.3192      0.822 0.888  0 0.112
#> SRR1643356     1  0.3192      0.822 0.888  0 0.112
#> SRR1643357     1  0.3192      0.822 0.888  0 0.112
#> SRR1643358     1  0.0000      0.866 1.000  0 0.000
#> SRR1643359     1  0.0000      0.866 1.000  0 0.000
#> SRR1643360     1  0.0000      0.866 1.000  0 0.000
#> SRR1643361     1  0.0000      0.866 1.000  0 0.000
#> SRR1643362     1  0.0000      0.866 1.000  0 0.000
#> SRR1643363     1  0.0000      0.866 1.000  0 0.000
#> SRR1643364     1  0.0000      0.866 1.000  0 0.000
#> SRR1643365     1  0.0000      0.866 1.000  0 0.000
#> SRR1643366     1  0.0000      0.866 1.000  0 0.000
#> SRR1643367     1  0.0000      0.866 1.000  0 0.000
#> SRR1643368     1  0.0000      0.866 1.000  0 0.000
#> SRR1643369     1  0.0000      0.866 1.000  0 0.000
#> SRR1643370     1  0.0000      0.866 1.000  0 0.000
#> SRR1643371     1  0.0000      0.866 1.000  0 0.000
#> SRR1643372     1  0.0000      0.866 1.000  0 0.000
#> SRR1643373     1  0.0000      0.866 1.000  0 0.000
#> SRR1643374     1  0.0000      0.866 1.000  0 0.000
#> SRR1643375     1  0.0000      0.866 1.000  0 0.000
#> SRR1643376     1  0.0000      0.866 1.000  0 0.000
#> SRR1643377     1  0.0000      0.866 1.000  0 0.000
#> SRR1643378     1  0.0000      0.866 1.000  0 0.000
#> SRR1643379     1  0.0000      0.866 1.000  0 0.000
#> SRR1643380     1  0.0000      0.866 1.000  0 0.000
#> SRR1643381     1  0.0000      0.866 1.000  0 0.000
#> SRR1643382     1  0.0000      0.866 1.000  0 0.000
#> SRR1643383     1  0.0000      0.866 1.000  0 0.000
#> SRR1643384     1  0.0000      0.866 1.000  0 0.000
#> SRR1643385     1  0.0000      0.866 1.000  0 0.000
#> SRR1643386     1  0.0000      0.866 1.000  0 0.000
#> SRR1643387     1  0.0000      0.866 1.000  0 0.000
#> SRR1643388     1  0.0000      0.866 1.000  0 0.000
#> SRR1643389     1  0.0000      0.866 1.000  0 0.000
#> SRR1643390     1  0.5216      0.762 0.740  0 0.260
#> SRR1643391     1  0.5216      0.762 0.740  0 0.260
#> SRR1643392     1  0.5216      0.762 0.740  0 0.260
#> SRR1643393     1  0.5216      0.762 0.740  0 0.260
#> SRR1643394     1  0.5216      0.762 0.740  0 0.260
#> SRR1643395     1  0.5216      0.762 0.740  0 0.260
#> SRR1643396     1  0.5216      0.762 0.740  0 0.260
#> SRR1643397     1  0.5216      0.762 0.740  0 0.260
#> SRR1643398     1  0.5216      0.762 0.740  0 0.260
#> SRR1643399     1  0.5216      0.762 0.740  0 0.260
#> SRR1643400     1  0.5216      0.762 0.740  0 0.260
#> SRR1643401     1  0.5216      0.762 0.740  0 0.260
#> SRR1643402     1  0.5216      0.762 0.740  0 0.260
#> SRR1643403     1  0.5216      0.762 0.740  0 0.260
#> SRR1643404     1  0.5216      0.762 0.740  0 0.260
#> SRR1643405     1  0.5216      0.762 0.740  0 0.260
#> SRR1643406     1  0.5216      0.762 0.740  0 0.260
#> SRR1643407     1  0.5216      0.762 0.740  0 0.260
#> SRR1643408     1  0.5216      0.762 0.740  0 0.260
#> SRR1643409     1  0.5216      0.762 0.740  0 0.260
#> SRR1643410     1  0.5216      0.762 0.740  0 0.260
#> SRR1643411     1  0.5216      0.762 0.740  0 0.260
#> SRR1643412     1  0.5216      0.762 0.740  0 0.260
#> SRR1643413     1  0.5216      0.762 0.740  0 0.260
#> SRR1643414     1  0.5216      0.762 0.740  0 0.260
#> SRR1643415     1  0.5216      0.762 0.740  0 0.260
#> SRR1643416     1  0.5216      0.762 0.740  0 0.260
#> SRR1643417     1  0.5216      0.762 0.740  0 0.260
#> SRR1643418     1  0.1289      0.847 0.968  0 0.032
#> SRR1643419     1  0.1289      0.847 0.968  0 0.032
#> SRR1643420     1  0.1289      0.847 0.968  0 0.032
#> SRR1643421     1  0.1289      0.847 0.968  0 0.032
#> SRR1643422     1  0.1289      0.847 0.968  0 0.032
#> SRR1643423     1  0.1289      0.847 0.968  0 0.032
#> SRR1643424     1  0.1289      0.847 0.968  0 0.032
#> SRR1643425     1  0.1289      0.847 0.968  0 0.032
#> SRR1643426     1  0.1289      0.847 0.968  0 0.032
#> SRR1643427     1  0.1289      0.847 0.968  0 0.032
#> SRR1643428     1  0.1289      0.847 0.968  0 0.032
#> SRR1643429     1  0.1289      0.847 0.968  0 0.032
#> SRR1643430     1  0.1289      0.847 0.968  0 0.032
#> SRR1643431     1  0.1289      0.847 0.968  0 0.032
#> SRR1643432     1  0.1289      0.847 0.968  0 0.032
#> SRR1643433     1  0.1289      0.847 0.968  0 0.032
#> SRR1643434     1  0.1289      0.847 0.968  0 0.032
#> SRR1643435     1  0.1289      0.847 0.968  0 0.032
#> SRR1643436     1  0.1289      0.847 0.968  0 0.032
#> SRR1643437     1  0.1289      0.847 0.968  0 0.032
#> SRR1643438     1  0.1289      0.847 0.968  0 0.032
#> SRR1643439     1  0.1289      0.847 0.968  0 0.032
#> SRR1643440     1  0.1289      0.847 0.968  0 0.032
#> SRR1643441     1  0.1289      0.847 0.968  0 0.032
#> SRR1643442     1  0.1289      0.847 0.968  0 0.032
#> SRR1643443     2  0.0000      1.000 0.000  1 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1 0.000
#> SRR1643505     2  0.0000      1.000 0.000  1 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1 0.000

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1 p2    p3    p4
#> SRR1643167     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643168     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643169     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643170     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643171     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643172     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643173     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643174     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643175     1  0.3569      0.789 0.804  0 0.000 0.196
#> SRR1643176     1  0.3649      0.782 0.796  0 0.000 0.204
#> SRR1643177     1  0.3528      0.793 0.808  0 0.000 0.192
#> SRR1643178     1  0.3610      0.786 0.800  0 0.000 0.200
#> SRR1643180     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643181     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643182     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643183     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643184     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643185     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643186     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643187     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643188     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643189     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643190     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643191     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643192     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643193     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643194     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643195     1  0.3219      0.813 0.836  0 0.000 0.164
#> SRR1643196     1  0.3219      0.813 0.836  0 0.000 0.164
#> SRR1643197     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643198     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643199     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643200     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643201     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643202     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643203     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643204     1  0.0000      0.934 1.000  0 0.000 0.000
#> SRR1643205     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643206     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643207     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643208     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643209     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643210     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643211     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643212     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643213     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643214     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643215     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643216     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643217     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643218     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643219     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643220     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643221     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643222     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643223     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643224     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643225     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643226     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643227     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643228     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643229     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643230     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643231     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643232     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643233     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643234     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643235     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643236     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643237     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643238     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643239     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643240     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643241     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643242     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643243     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643245     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643246     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643247     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643248     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643249     3  0.0921      0.970 0.028  0 0.972 0.000
#> SRR1643250     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643251     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643252     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643253     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643254     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643255     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643256     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643257     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643258     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643259     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643260     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643261     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643262     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643263     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643264     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643266     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643267     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643268     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643269     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643270     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643271     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643272     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643273     4  0.1022      0.966 0.032  0 0.000 0.968
#> SRR1643274     4  0.1302      0.958 0.044  0 0.000 0.956
#> SRR1643275     4  0.1211      0.961 0.040  0 0.000 0.960
#> SRR1643276     4  0.1118      0.964 0.036  0 0.000 0.964
#> SRR1643277     4  0.1211      0.961 0.040  0 0.000 0.960
#> SRR1643278     4  0.1302      0.958 0.044  0 0.000 0.956
#> SRR1643279     4  0.1302      0.958 0.044  0 0.000 0.956
#> SRR1643280     4  0.1022      0.966 0.032  0 0.000 0.968
#> SRR1643281     4  0.1022      0.966 0.032  0 0.000 0.968
#> SRR1643282     4  0.1211      0.961 0.040  0 0.000 0.960
#> SRR1643283     4  0.1211      0.961 0.040  0 0.000 0.960
#> SRR1643284     4  0.1211      0.961 0.040  0 0.000 0.960
#> SRR1643285     4  0.1022      0.966 0.032  0 0.000 0.968
#> SRR1643286     4  0.1302      0.958 0.044  0 0.000 0.956
#> SRR1643287     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643288     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643289     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643290     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643291     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643292     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643293     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643294     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643295     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643296     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643297     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643298     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643299     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643300     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643301     4  0.1022      0.966 0.032  0 0.000 0.968
#> SRR1643302     4  0.1022      0.966 0.032  0 0.000 0.968
#> SRR1643303     4  0.1022      0.966 0.032  0 0.000 0.968
#> SRR1643304     4  0.1022      0.966 0.032  0 0.000 0.968
#> SRR1643305     4  0.1022      0.966 0.032  0 0.000 0.968
#> SRR1643306     4  0.1022      0.966 0.032  0 0.000 0.968
#> SRR1643307     4  0.1022      0.966 0.032  0 0.000 0.968
#> SRR1643308     4  0.1022      0.966 0.032  0 0.000 0.968
#> SRR1643309     4  0.1022      0.966 0.032  0 0.000 0.968
#> SRR1643310     4  0.1022      0.966 0.032  0 0.000 0.968
#> SRR1643311     4  0.1022      0.966 0.032  0 0.000 0.968
#> SRR1643312     4  0.1022      0.966 0.032  0 0.000 0.968
#> SRR1643313     4  0.1022      0.966 0.032  0 0.000 0.968
#> SRR1643314     4  0.2216      0.913 0.092  0 0.000 0.908
#> SRR1643315     4  0.2216      0.913 0.092  0 0.000 0.908
#> SRR1643316     4  0.2216      0.913 0.092  0 0.000 0.908
#> SRR1643317     4  0.2216      0.913 0.092  0 0.000 0.908
#> SRR1643318     4  0.2216      0.913 0.092  0 0.000 0.908
#> SRR1643319     4  0.2281      0.909 0.096  0 0.000 0.904
#> SRR1643320     4  0.2149      0.917 0.088  0 0.000 0.912
#> SRR1643321     4  0.2081      0.921 0.084  0 0.000 0.916
#> SRR1643322     4  0.2216      0.913 0.092  0 0.000 0.908
#> SRR1643323     4  0.2345      0.904 0.100  0 0.000 0.900
#> SRR1643324     4  0.2216      0.913 0.092  0 0.000 0.908
#> SRR1643325     4  0.2281      0.909 0.096  0 0.000 0.904
#> SRR1643326     4  0.2216      0.913 0.092  0 0.000 0.908
#> SRR1643327     4  0.2149      0.917 0.088  0 0.000 0.912
#> SRR1643328     1  0.0592      0.931 0.984  0 0.000 0.016
#> SRR1643329     1  0.0469      0.933 0.988  0 0.000 0.012
#> SRR1643330     1  0.0469      0.933 0.988  0 0.000 0.012
#> SRR1643331     1  0.0921      0.924 0.972  0 0.000 0.028
#> SRR1643332     1  0.0469      0.933 0.988  0 0.000 0.012
#> SRR1643333     1  0.0707      0.929 0.980  0 0.000 0.020
#> SRR1643334     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643335     1  0.1211      0.916 0.960  0 0.000 0.040
#> SRR1643336     1  0.0817      0.926 0.976  0 0.000 0.024
#> SRR1643337     1  0.0921      0.924 0.972  0 0.000 0.028
#> SRR1643338     1  0.0469      0.933 0.988  0 0.000 0.012
#> SRR1643339     1  0.0817      0.926 0.976  0 0.000 0.024
#> SRR1643340     1  0.0921      0.924 0.972  0 0.000 0.028
#> SRR1643341     1  0.0921      0.924 0.972  0 0.000 0.028
#> SRR1643342     1  0.0921      0.924 0.972  0 0.000 0.028
#> SRR1643343     1  0.3764      0.771 0.784  0 0.000 0.216
#> SRR1643344     1  0.3764      0.771 0.784  0 0.000 0.216
#> SRR1643345     1  0.3764      0.771 0.784  0 0.000 0.216
#> SRR1643346     1  0.3764      0.771 0.784  0 0.000 0.216
#> SRR1643347     1  0.3764      0.771 0.784  0 0.000 0.216
#> SRR1643348     1  0.3764      0.771 0.784  0 0.000 0.216
#> SRR1643349     1  0.3764      0.771 0.784  0 0.000 0.216
#> SRR1643350     1  0.3764      0.771 0.784  0 0.000 0.216
#> SRR1643351     1  0.3764      0.771 0.784  0 0.000 0.216
#> SRR1643352     1  0.3764      0.771 0.784  0 0.000 0.216
#> SRR1643353     1  0.3764      0.771 0.784  0 0.000 0.216
#> SRR1643354     1  0.3764      0.771 0.784  0 0.000 0.216
#> SRR1643355     1  0.3764      0.771 0.784  0 0.000 0.216
#> SRR1643356     1  0.3764      0.771 0.784  0 0.000 0.216
#> SRR1643357     1  0.3764      0.771 0.784  0 0.000 0.216
#> SRR1643358     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643359     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643360     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643361     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643362     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643363     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643364     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643365     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643366     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643367     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643368     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643369     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643370     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643371     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643372     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643373     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643374     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643375     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643376     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643377     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643378     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643379     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643380     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643381     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643382     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643383     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643384     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643385     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643386     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643387     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643388     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643389     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643390     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643391     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643392     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643393     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643394     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643395     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643396     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643397     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643398     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643399     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643400     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643401     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643402     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643403     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643404     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643405     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643406     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643407     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643408     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643409     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643410     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643411     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643412     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643413     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643414     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643415     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643416     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643417     1  0.0188      0.936 0.996  0 0.000 0.004
#> SRR1643418     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643419     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643420     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643421     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643422     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643423     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643424     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643425     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643426     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643427     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643428     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643429     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643430     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643431     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643432     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643433     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643434     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643435     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643436     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643437     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643438     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643439     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643440     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643441     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643442     4  0.0000      0.981 0.000  0 0.000 1.000
#> SRR1643443     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643505     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1 0.000 0.000

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1 p2    p3    p4    p5
#> SRR1643167     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643168     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643169     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643170     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643171     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643172     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643173     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643174     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643175     1  0.3983      0.510 0.660  0 0.000 0.000 0.340
#> SRR1643176     1  0.3983      0.510 0.660  0 0.000 0.000 0.340
#> SRR1643177     1  0.3966      0.518 0.664  0 0.000 0.000 0.336
#> SRR1643178     1  0.3983      0.510 0.660  0 0.000 0.000 0.340
#> SRR1643180     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643181     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643182     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643183     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643184     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643185     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643186     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643187     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643188     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643189     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643190     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643191     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643192     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643193     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643194     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643195     1  0.6383      0.116 0.516  0 0.000 0.228 0.256
#> SRR1643196     1  0.6383      0.116 0.516  0 0.000 0.228 0.256
#> SRR1643197     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643198     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643199     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643200     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643201     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643202     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643203     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643204     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643205     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643206     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643207     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643208     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643209     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643210     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643211     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643212     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643213     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643214     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643215     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643216     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643217     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643218     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643219     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643220     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643221     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643222     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643223     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643224     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643225     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643226     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643227     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643228     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643229     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643230     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643231     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643232     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643233     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643234     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643235     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643236     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643237     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643238     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643239     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643240     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643241     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643242     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643243     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643245     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643246     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643247     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643248     3  0.0000      0.999 0.000  0 1.000 0.000 0.000
#> SRR1643249     3  0.1364      0.952 0.036  0 0.952 0.000 0.012
#> SRR1643250     4  0.3003      0.785 0.000  0 0.000 0.812 0.188
#> SRR1643251     4  0.3003      0.785 0.000  0 0.000 0.812 0.188
#> SRR1643252     4  0.2732      0.824 0.000  0 0.000 0.840 0.160
#> SRR1643253     4  0.3003      0.785 0.000  0 0.000 0.812 0.188
#> SRR1643254     4  0.3003      0.785 0.000  0 0.000 0.812 0.188
#> SRR1643255     4  0.2852      0.808 0.000  0 0.000 0.828 0.172
#> SRR1643256     4  0.3003      0.785 0.000  0 0.000 0.812 0.188
#> SRR1643257     4  0.3003      0.785 0.000  0 0.000 0.812 0.188
#> SRR1643258     4  0.3003      0.785 0.000  0 0.000 0.812 0.188
#> SRR1643259     4  0.3003      0.785 0.000  0 0.000 0.812 0.188
#> SRR1643260     4  0.3003      0.785 0.000  0 0.000 0.812 0.188
#> SRR1643261     4  0.3003      0.785 0.000  0 0.000 0.812 0.188
#> SRR1643262     4  0.2074      0.890 0.000  0 0.000 0.896 0.104
#> SRR1643263     4  0.2074      0.890 0.000  0 0.000 0.896 0.104
#> SRR1643264     4  0.2074      0.890 0.000  0 0.000 0.896 0.104
#> SRR1643266     4  0.2074      0.890 0.000  0 0.000 0.896 0.104
#> SRR1643267     4  0.2074      0.890 0.000  0 0.000 0.896 0.104
#> SRR1643268     4  0.2074      0.890 0.000  0 0.000 0.896 0.104
#> SRR1643269     4  0.2074      0.890 0.000  0 0.000 0.896 0.104
#> SRR1643270     4  0.2074      0.890 0.000  0 0.000 0.896 0.104
#> SRR1643271     4  0.2074      0.890 0.000  0 0.000 0.896 0.104
#> SRR1643272     4  0.2074      0.890 0.000  0 0.000 0.896 0.104
#> SRR1643273     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643274     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643275     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643276     5  0.3274      0.891 0.000  0 0.000 0.220 0.780
#> SRR1643277     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643278     5  0.3366      0.883 0.000  0 0.000 0.232 0.768
#> SRR1643279     5  0.3274      0.891 0.000  0 0.000 0.220 0.780
#> SRR1643280     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643281     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643282     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643283     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643284     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643285     5  0.3274      0.891 0.000  0 0.000 0.220 0.780
#> SRR1643286     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643287     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643288     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643289     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643290     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643291     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643292     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643293     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643294     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643295     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643296     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643297     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643298     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643299     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643300     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643301     5  0.3534      0.859 0.000  0 0.000 0.256 0.744
#> SRR1643302     5  0.3452      0.873 0.000  0 0.000 0.244 0.756
#> SRR1643303     5  0.3452      0.873 0.000  0 0.000 0.244 0.756
#> SRR1643304     5  0.3452      0.873 0.000  0 0.000 0.244 0.756
#> SRR1643305     5  0.3452      0.873 0.000  0 0.000 0.244 0.756
#> SRR1643306     5  0.3452      0.873 0.000  0 0.000 0.244 0.756
#> SRR1643307     5  0.3480      0.869 0.000  0 0.000 0.248 0.752
#> SRR1643308     5  0.3424      0.877 0.000  0 0.000 0.240 0.760
#> SRR1643309     5  0.3774      0.798 0.000  0 0.000 0.296 0.704
#> SRR1643310     5  0.3424      0.877 0.000  0 0.000 0.240 0.760
#> SRR1643311     5  0.3561      0.854 0.000  0 0.000 0.260 0.740
#> SRR1643312     5  0.3452      0.873 0.000  0 0.000 0.244 0.756
#> SRR1643313     5  0.3561      0.854 0.000  0 0.000 0.260 0.740
#> SRR1643314     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643315     5  0.3274      0.891 0.000  0 0.000 0.220 0.780
#> SRR1643316     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643317     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643318     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643319     5  0.5240      0.783 0.096  0 0.000 0.244 0.660
#> SRR1643320     5  0.3274      0.891 0.000  0 0.000 0.220 0.780
#> SRR1643321     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643322     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643323     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643324     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643325     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643326     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643327     5  0.3242      0.893 0.000  0 0.000 0.216 0.784
#> SRR1643328     1  0.0162      0.964 0.996  0 0.000 0.000 0.004
#> SRR1643329     1  0.0162      0.964 0.996  0 0.000 0.000 0.004
#> SRR1643330     1  0.0162      0.964 0.996  0 0.000 0.000 0.004
#> SRR1643331     1  0.0162      0.964 0.996  0 0.000 0.000 0.004
#> SRR1643332     1  0.0162      0.964 0.996  0 0.000 0.000 0.004
#> SRR1643333     1  0.0162      0.964 0.996  0 0.000 0.000 0.004
#> SRR1643334     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643335     1  0.0162      0.964 0.996  0 0.000 0.000 0.004
#> SRR1643336     1  0.0162      0.964 0.996  0 0.000 0.000 0.004
#> SRR1643337     1  0.0162      0.964 0.996  0 0.000 0.000 0.004
#> SRR1643338     1  0.0162      0.964 0.996  0 0.000 0.000 0.004
#> SRR1643339     1  0.0162      0.964 0.996  0 0.000 0.000 0.004
#> SRR1643340     1  0.0162      0.964 0.996  0 0.000 0.000 0.004
#> SRR1643341     1  0.0162      0.964 0.996  0 0.000 0.000 0.004
#> SRR1643342     1  0.0162      0.964 0.996  0 0.000 0.000 0.004
#> SRR1643343     5  0.0794      0.756 0.028  0 0.000 0.000 0.972
#> SRR1643344     5  0.0794      0.756 0.028  0 0.000 0.000 0.972
#> SRR1643345     5  0.0794      0.756 0.028  0 0.000 0.000 0.972
#> SRR1643346     5  0.0794      0.756 0.028  0 0.000 0.000 0.972
#> SRR1643347     5  0.0794      0.756 0.028  0 0.000 0.000 0.972
#> SRR1643348     5  0.0794      0.756 0.028  0 0.000 0.000 0.972
#> SRR1643349     5  0.0794      0.756 0.028  0 0.000 0.000 0.972
#> SRR1643350     5  0.0794      0.756 0.028  0 0.000 0.000 0.972
#> SRR1643351     5  0.0794      0.756 0.028  0 0.000 0.000 0.972
#> SRR1643352     5  0.0794      0.756 0.028  0 0.000 0.000 0.972
#> SRR1643353     5  0.0794      0.756 0.028  0 0.000 0.000 0.972
#> SRR1643354     5  0.0794      0.756 0.028  0 0.000 0.000 0.972
#> SRR1643355     5  0.0794      0.756 0.028  0 0.000 0.000 0.972
#> SRR1643356     5  0.0794      0.756 0.028  0 0.000 0.000 0.972
#> SRR1643357     5  0.0794      0.756 0.028  0 0.000 0.000 0.972
#> SRR1643358     4  0.1270      0.928 0.000  0 0.000 0.948 0.052
#> SRR1643359     4  0.1341      0.926 0.000  0 0.000 0.944 0.056
#> SRR1643360     4  0.1270      0.928 0.000  0 0.000 0.948 0.052
#> SRR1643361     4  0.1410      0.924 0.000  0 0.000 0.940 0.060
#> SRR1643362     4  0.1410      0.924 0.000  0 0.000 0.940 0.060
#> SRR1643363     4  0.1270      0.928 0.000  0 0.000 0.948 0.052
#> SRR1643364     4  0.0880      0.936 0.000  0 0.000 0.968 0.032
#> SRR1643365     4  0.1410      0.924 0.000  0 0.000 0.940 0.060
#> SRR1643366     4  0.1341      0.926 0.000  0 0.000 0.944 0.056
#> SRR1643367     4  0.1341      0.926 0.000  0 0.000 0.944 0.056
#> SRR1643368     4  0.1478      0.921 0.000  0 0.000 0.936 0.064
#> SRR1643369     4  0.1410      0.924 0.000  0 0.000 0.940 0.060
#> SRR1643370     4  0.1410      0.924 0.000  0 0.000 0.940 0.060
#> SRR1643371     4  0.1121      0.932 0.000  0 0.000 0.956 0.044
#> SRR1643372     4  0.1341      0.926 0.000  0 0.000 0.944 0.056
#> SRR1643373     4  0.0162      0.945 0.000  0 0.000 0.996 0.004
#> SRR1643374     4  0.0162      0.945 0.000  0 0.000 0.996 0.004
#> SRR1643375     4  0.0162      0.945 0.000  0 0.000 0.996 0.004
#> SRR1643376     4  0.0162      0.945 0.000  0 0.000 0.996 0.004
#> SRR1643377     4  0.0162      0.945 0.000  0 0.000 0.996 0.004
#> SRR1643378     4  0.0162      0.945 0.000  0 0.000 0.996 0.004
#> SRR1643379     4  0.0162      0.945 0.000  0 0.000 0.996 0.004
#> SRR1643380     4  0.0162      0.945 0.000  0 0.000 0.996 0.004
#> SRR1643381     4  0.0290      0.944 0.000  0 0.000 0.992 0.008
#> SRR1643382     4  0.0162      0.945 0.000  0 0.000 0.996 0.004
#> SRR1643383     4  0.0290      0.944 0.000  0 0.000 0.992 0.008
#> SRR1643384     4  0.0162      0.945 0.000  0 0.000 0.996 0.004
#> SRR1643385     4  0.0290      0.944 0.000  0 0.000 0.992 0.008
#> SRR1643386     4  0.0162      0.945 0.000  0 0.000 0.996 0.004
#> SRR1643387     4  0.0162      0.945 0.000  0 0.000 0.996 0.004
#> SRR1643388     4  0.0404      0.943 0.000  0 0.000 0.988 0.012
#> SRR1643389     4  0.0162      0.945 0.000  0 0.000 0.996 0.004
#> SRR1643390     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643391     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643392     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643393     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643394     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643395     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643396     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643397     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643398     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643399     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643400     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643401     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643402     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643403     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643404     1  0.0000      0.965 1.000  0 0.000 0.000 0.000
#> SRR1643405     1  0.0510      0.956 0.984  0 0.000 0.000 0.016
#> SRR1643406     1  0.0510      0.956 0.984  0 0.000 0.000 0.016
#> SRR1643407     1  0.0609      0.952 0.980  0 0.000 0.000 0.020
#> SRR1643408     1  0.0609      0.952 0.980  0 0.000 0.000 0.020
#> SRR1643409     1  0.0290      0.961 0.992  0 0.000 0.000 0.008
#> SRR1643410     1  0.0162      0.964 0.996  0 0.000 0.000 0.004
#> SRR1643411     1  0.0609      0.952 0.980  0 0.000 0.000 0.020
#> SRR1643412     1  0.0510      0.956 0.984  0 0.000 0.000 0.016
#> SRR1643413     1  0.0609      0.952 0.980  0 0.000 0.000 0.020
#> SRR1643414     1  0.0609      0.952 0.980  0 0.000 0.000 0.020
#> SRR1643415     1  0.0609      0.952 0.980  0 0.000 0.000 0.020
#> SRR1643416     1  0.0609      0.952 0.980  0 0.000 0.000 0.020
#> SRR1643417     1  0.0609      0.952 0.980  0 0.000 0.000 0.020
#> SRR1643418     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643419     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643420     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643421     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643422     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643423     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643424     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643425     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643426     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643427     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643428     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643429     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643430     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643431     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643432     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643433     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643434     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643435     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643436     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643437     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643438     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643439     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643440     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643441     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643442     4  0.0000      0.945 0.000  0 0.000 1.000 0.000
#> SRR1643443     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643505     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1 0.000 0.000 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1 0.000 0.000 0.000

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1 p2    p3    p4    p5    p6
#> SRR1643167     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643168     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643169     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643170     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643171     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643172     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643173     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643174     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643175     1  0.3684      0.410 0.628  0 0.000 0.000 0.000 0.372
#> SRR1643176     1  0.3684      0.410 0.628  0 0.000 0.000 0.000 0.372
#> SRR1643177     1  0.3684      0.410 0.628  0 0.000 0.000 0.000 0.372
#> SRR1643178     1  0.3706      0.389 0.620  0 0.000 0.000 0.000 0.380
#> SRR1643180     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643181     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643182     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643183     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643184     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643185     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643186     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643187     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643188     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643189     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643190     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643191     1  0.1267      0.917 0.940  0 0.000 0.000 0.060 0.000
#> SRR1643192     1  0.1267      0.917 0.940  0 0.000 0.000 0.060 0.000
#> SRR1643193     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643194     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643195     1  0.6372      0.520 0.560  0 0.000 0.124 0.096 0.220
#> SRR1643196     1  0.6372      0.520 0.560  0 0.000 0.124 0.096 0.220
#> SRR1643197     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643198     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643199     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643200     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643201     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643202     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643203     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643204     1  0.2092      0.903 0.876  0 0.000 0.000 0.124 0.000
#> SRR1643205     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643206     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643207     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643208     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643209     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643210     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643211     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643212     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643213     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643214     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643215     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643216     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643217     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643218     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643219     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643220     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643221     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643222     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643223     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643224     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643225     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643226     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643227     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643228     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643229     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643230     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643231     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643232     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643233     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643234     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643235     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643236     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643237     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643238     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643239     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643240     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643241     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643242     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643243     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643245     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643246     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643247     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643248     3  0.0000      0.998 0.000  0 1.000 0.000 0.000 0.000
#> SRR1643249     3  0.2563      0.891 0.028  0 0.892 0.000 0.044 0.036
#> SRR1643250     6  0.3869      0.254 0.000  0 0.000 0.500 0.000 0.500
#> SRR1643251     4  0.3869     -0.278 0.000  0 0.000 0.500 0.000 0.500
#> SRR1643252     4  0.3867     -0.237 0.000  0 0.000 0.512 0.000 0.488
#> SRR1643253     6  0.3868      0.268 0.000  0 0.000 0.496 0.000 0.504
#> SRR1643254     6  0.3868      0.268 0.000  0 0.000 0.496 0.000 0.504
#> SRR1643255     4  0.3868     -0.251 0.000  0 0.000 0.508 0.000 0.492
#> SRR1643256     6  0.3868      0.268 0.000  0 0.000 0.496 0.000 0.504
#> SRR1643257     6  0.3868      0.268 0.000  0 0.000 0.496 0.000 0.504
#> SRR1643258     6  0.3867      0.288 0.000  0 0.000 0.488 0.000 0.512
#> SRR1643259     6  0.3868      0.268 0.000  0 0.000 0.496 0.000 0.504
#> SRR1643260     6  0.3868      0.281 0.000  0 0.000 0.492 0.000 0.508
#> SRR1643261     6  0.3868      0.281 0.000  0 0.000 0.492 0.000 0.508
#> SRR1643262     4  0.1444      0.794 0.000  0 0.000 0.928 0.000 0.072
#> SRR1643263     4  0.1444      0.794 0.000  0 0.000 0.928 0.000 0.072
#> SRR1643264     4  0.1444      0.794 0.000  0 0.000 0.928 0.000 0.072
#> SRR1643266     4  0.1444      0.794 0.000  0 0.000 0.928 0.000 0.072
#> SRR1643267     4  0.1444      0.794 0.000  0 0.000 0.928 0.000 0.072
#> SRR1643268     4  0.1863      0.765 0.000  0 0.000 0.896 0.000 0.104
#> SRR1643269     4  0.1501      0.791 0.000  0 0.000 0.924 0.000 0.076
#> SRR1643270     4  0.1444      0.794 0.000  0 0.000 0.928 0.000 0.072
#> SRR1643271     4  0.1444      0.794 0.000  0 0.000 0.928 0.000 0.072
#> SRR1643272     4  0.1444      0.794 0.000  0 0.000 0.928 0.000 0.072
#> SRR1643273     6  0.2260      0.850 0.000  0 0.000 0.140 0.000 0.860
#> SRR1643274     6  0.2219      0.851 0.000  0 0.000 0.136 0.000 0.864
#> SRR1643275     6  0.2300      0.849 0.000  0 0.000 0.144 0.000 0.856
#> SRR1643276     6  0.2178      0.851 0.000  0 0.000 0.132 0.000 0.868
#> SRR1643277     6  0.2300      0.849 0.000  0 0.000 0.144 0.000 0.856
#> SRR1643278     6  0.2416      0.844 0.000  0 0.000 0.156 0.000 0.844
#> SRR1643279     6  0.2300      0.849 0.000  0 0.000 0.144 0.000 0.856
#> SRR1643280     6  0.2300      0.849 0.000  0 0.000 0.144 0.000 0.856
#> SRR1643281     6  0.2260      0.850 0.000  0 0.000 0.140 0.000 0.860
#> SRR1643282     6  0.2178      0.851 0.000  0 0.000 0.132 0.000 0.868
#> SRR1643283     6  0.2300      0.849 0.000  0 0.000 0.144 0.000 0.856
#> SRR1643284     6  0.2300      0.849 0.000  0 0.000 0.144 0.000 0.856
#> SRR1643285     6  0.2260      0.851 0.000  0 0.000 0.140 0.000 0.860
#> SRR1643286     6  0.2300      0.849 0.000  0 0.000 0.144 0.000 0.856
#> SRR1643287     4  0.3563      0.432 0.000  0 0.000 0.664 0.336 0.000
#> SRR1643288     4  0.3563      0.432 0.000  0 0.000 0.664 0.336 0.000
#> SRR1643289     4  0.3563      0.432 0.000  0 0.000 0.664 0.336 0.000
#> SRR1643290     4  0.3563      0.432 0.000  0 0.000 0.664 0.336 0.000
#> SRR1643291     4  0.3563      0.432 0.000  0 0.000 0.664 0.336 0.000
#> SRR1643292     4  0.3563      0.432 0.000  0 0.000 0.664 0.336 0.000
#> SRR1643293     4  0.3563      0.432 0.000  0 0.000 0.664 0.336 0.000
#> SRR1643294     4  0.3563      0.432 0.000  0 0.000 0.664 0.336 0.000
#> SRR1643295     4  0.3563      0.432 0.000  0 0.000 0.664 0.336 0.000
#> SRR1643296     4  0.3563      0.432 0.000  0 0.000 0.664 0.336 0.000
#> SRR1643297     4  0.3563      0.432 0.000  0 0.000 0.664 0.336 0.000
#> SRR1643298     4  0.3563      0.432 0.000  0 0.000 0.664 0.336 0.000
#> SRR1643299     4  0.3563      0.432 0.000  0 0.000 0.664 0.336 0.000
#> SRR1643300     4  0.3563      0.432 0.000  0 0.000 0.664 0.336 0.000
#> SRR1643301     6  0.2527      0.838 0.000  0 0.000 0.168 0.000 0.832
#> SRR1643302     6  0.2527      0.838 0.000  0 0.000 0.168 0.000 0.832
#> SRR1643303     6  0.2527      0.838 0.000  0 0.000 0.168 0.000 0.832
#> SRR1643304     6  0.2527      0.838 0.000  0 0.000 0.168 0.000 0.832
#> SRR1643305     6  0.2527      0.838 0.000  0 0.000 0.168 0.000 0.832
#> SRR1643306     6  0.2527      0.838 0.000  0 0.000 0.168 0.000 0.832
#> SRR1643307     6  0.2527      0.838 0.000  0 0.000 0.168 0.000 0.832
#> SRR1643308     6  0.2491      0.841 0.000  0 0.000 0.164 0.000 0.836
#> SRR1643309     6  0.2562      0.835 0.000  0 0.000 0.172 0.000 0.828
#> SRR1643310     6  0.2527      0.838 0.000  0 0.000 0.168 0.000 0.832
#> SRR1643311     6  0.2597      0.831 0.000  0 0.000 0.176 0.000 0.824
#> SRR1643312     6  0.2527      0.838 0.000  0 0.000 0.168 0.000 0.832
#> SRR1643313     6  0.2527      0.838 0.000  0 0.000 0.168 0.000 0.832
#> SRR1643314     6  0.0363      0.849 0.000  0 0.000 0.012 0.000 0.988
#> SRR1643315     6  0.0363      0.849 0.000  0 0.000 0.012 0.000 0.988
#> SRR1643316     6  0.0363      0.849 0.000  0 0.000 0.012 0.000 0.988
#> SRR1643317     6  0.0363      0.849 0.000  0 0.000 0.012 0.000 0.988
#> SRR1643318     6  0.0363      0.849 0.000  0 0.000 0.012 0.000 0.988
#> SRR1643319     6  0.2558      0.844 0.028  0 0.000 0.104 0.000 0.868
#> SRR1643320     6  0.0363      0.849 0.000  0 0.000 0.012 0.000 0.988
#> SRR1643321     6  0.0363      0.849 0.000  0 0.000 0.012 0.000 0.988
#> SRR1643322     6  0.0363      0.849 0.000  0 0.000 0.012 0.000 0.988
#> SRR1643323     6  0.0363      0.849 0.000  0 0.000 0.012 0.000 0.988
#> SRR1643324     6  0.0363      0.849 0.000  0 0.000 0.012 0.000 0.988
#> SRR1643325     6  0.0363      0.849 0.000  0 0.000 0.012 0.000 0.988
#> SRR1643326     6  0.0363      0.849 0.000  0 0.000 0.012 0.000 0.988
#> SRR1643327     6  0.0363      0.849 0.000  0 0.000 0.012 0.000 0.988
#> SRR1643328     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643329     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643330     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643331     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643332     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643333     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643334     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643335     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643336     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643337     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643338     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643339     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643340     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643341     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643342     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643343     6  0.0000      0.844 0.000  0 0.000 0.000 0.000 1.000
#> SRR1643344     6  0.0000      0.844 0.000  0 0.000 0.000 0.000 1.000
#> SRR1643345     6  0.0000      0.844 0.000  0 0.000 0.000 0.000 1.000
#> SRR1643346     6  0.0000      0.844 0.000  0 0.000 0.000 0.000 1.000
#> SRR1643347     6  0.0000      0.844 0.000  0 0.000 0.000 0.000 1.000
#> SRR1643348     6  0.0000      0.844 0.000  0 0.000 0.000 0.000 1.000
#> SRR1643349     6  0.0000      0.844 0.000  0 0.000 0.000 0.000 1.000
#> SRR1643350     6  0.0000      0.844 0.000  0 0.000 0.000 0.000 1.000
#> SRR1643351     6  0.0000      0.844 0.000  0 0.000 0.000 0.000 1.000
#> SRR1643352     6  0.0000      0.844 0.000  0 0.000 0.000 0.000 1.000
#> SRR1643353     6  0.0000      0.844 0.000  0 0.000 0.000 0.000 1.000
#> SRR1643354     6  0.0000      0.844 0.000  0 0.000 0.000 0.000 1.000
#> SRR1643355     6  0.0000      0.844 0.000  0 0.000 0.000 0.000 1.000
#> SRR1643356     6  0.0000      0.844 0.000  0 0.000 0.000 0.000 1.000
#> SRR1643357     6  0.0000      0.844 0.000  0 0.000 0.000 0.000 1.000
#> SRR1643358     4  0.0713      0.815 0.000  0 0.000 0.972 0.000 0.028
#> SRR1643359     4  0.0713      0.815 0.000  0 0.000 0.972 0.000 0.028
#> SRR1643360     4  0.0713      0.815 0.000  0 0.000 0.972 0.000 0.028
#> SRR1643361     4  0.0713      0.815 0.000  0 0.000 0.972 0.000 0.028
#> SRR1643362     4  0.0713      0.815 0.000  0 0.000 0.972 0.000 0.028
#> SRR1643363     4  0.0713      0.815 0.000  0 0.000 0.972 0.000 0.028
#> SRR1643364     4  0.3636      0.462 0.004  0 0.000 0.676 0.000 0.320
#> SRR1643365     4  0.0713      0.815 0.000  0 0.000 0.972 0.000 0.028
#> SRR1643366     4  0.0713      0.815 0.000  0 0.000 0.972 0.000 0.028
#> SRR1643367     4  0.0713      0.815 0.000  0 0.000 0.972 0.000 0.028
#> SRR1643368     4  0.0713      0.815 0.000  0 0.000 0.972 0.000 0.028
#> SRR1643369     4  0.0713      0.815 0.000  0 0.000 0.972 0.000 0.028
#> SRR1643370     4  0.0713      0.815 0.000  0 0.000 0.972 0.000 0.028
#> SRR1643371     4  0.0363      0.814 0.000  0 0.000 0.988 0.000 0.012
#> SRR1643372     4  0.0713      0.815 0.000  0 0.000 0.972 0.000 0.028
#> SRR1643373     4  0.0000      0.812 0.000  0 0.000 1.000 0.000 0.000
#> SRR1643374     4  0.0000      0.812 0.000  0 0.000 1.000 0.000 0.000
#> SRR1643375     4  0.0000      0.812 0.000  0 0.000 1.000 0.000 0.000
#> SRR1643376     4  0.0000      0.812 0.000  0 0.000 1.000 0.000 0.000
#> SRR1643377     4  0.0000      0.812 0.000  0 0.000 1.000 0.000 0.000
#> SRR1643378     4  0.0000      0.812 0.000  0 0.000 1.000 0.000 0.000
#> SRR1643379     4  0.0000      0.812 0.000  0 0.000 1.000 0.000 0.000
#> SRR1643380     4  0.0000      0.812 0.000  0 0.000 1.000 0.000 0.000
#> SRR1643381     4  0.4084      0.192 0.012  0 0.000 0.588 0.000 0.400
#> SRR1643382     4  0.0000      0.812 0.000  0 0.000 1.000 0.000 0.000
#> SRR1643383     4  0.0000      0.812 0.000  0 0.000 1.000 0.000 0.000
#> SRR1643384     4  0.0000      0.812 0.000  0 0.000 1.000 0.000 0.000
#> SRR1643385     4  0.0000      0.812 0.000  0 0.000 1.000 0.000 0.000
#> SRR1643386     4  0.0000      0.812 0.000  0 0.000 1.000 0.000 0.000
#> SRR1643387     4  0.0000      0.812 0.000  0 0.000 1.000 0.000 0.000
#> SRR1643388     4  0.0000      0.812 0.000  0 0.000 1.000 0.000 0.000
#> SRR1643389     4  0.0000      0.812 0.000  0 0.000 1.000 0.000 0.000
#> SRR1643390     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643391     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643392     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643393     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643394     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643395     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643396     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643397     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643398     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643399     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643400     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643401     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643402     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643403     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643404     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643405     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643406     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643407     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643408     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643409     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643410     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643411     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643412     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643413     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643414     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643415     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643416     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643417     1  0.0000      0.929 1.000  0 0.000 0.000 0.000 0.000
#> SRR1643418     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643419     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643420     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643421     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643422     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643423     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643424     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643425     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643426     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643427     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643428     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643429     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643430     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643431     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643432     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643433     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643434     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643435     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643436     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643437     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643438     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643439     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643440     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643441     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643442     5  0.2092      1.000 0.000  0 0.000 0.124 0.876 0.000
#> SRR1643443     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643505     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1 0.000 0.000 0.000 0.000

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-MAD-mclust-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-MAD-mclust-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-MAD-mclust-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-MAD-mclust-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-MAD-mclust-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-MAD-mclust-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-MAD-mclust-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-MAD-mclust-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-MAD-mclust-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-MAD-mclust-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-MAD-mclust-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-MAD-mclust-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-MAD-mclust-get-signatures-3

get_signatures(res, k = 5)

plot of chunk tab-MAD-mclust-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-MAD-mclust-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-MAD-mclust-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-MAD-mclust-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-MAD-mclust-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)

plot of chunk tab-MAD-mclust-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-MAD-mclust-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk MAD-mclust-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-MAD-mclust-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-MAD-mclust-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-MAD-mclust-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-MAD-mclust-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-MAD-mclust-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk MAD-mclust-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


MAD:NMF*

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["MAD", "NMF"]
# you can also extract it by
# res = res_list["MAD:NMF"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'MAD' method.
#>   Subgroups are detected by 'NMF' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 4.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk MAD-NMF-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk MAD-NMF-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000         0.4350 0.566   0.566
#> 3 3 0.886           0.910       0.958         0.4184 0.805   0.655
#> 4 4 0.909           0.940       0.960         0.1619 0.825   0.575
#> 5 5 0.883           0.765       0.899         0.0497 0.997   0.989
#> 6 6 0.823           0.827       0.854         0.0364 0.953   0.828

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 4
#> attr(,"optional")
#> [1] 2

There is also optional best \(k\) = 2 that is worth to check.

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1 p2    p3
#> SRR1643167     1  0.1529      0.923 0.960  0 0.040
#> SRR1643168     1  0.1753      0.914 0.952  0 0.048
#> SRR1643169     1  0.1753      0.914 0.952  0 0.048
#> SRR1643170     1  0.1964      0.905 0.944  0 0.056
#> SRR1643171     3  0.4931      0.768 0.232  0 0.768
#> SRR1643172     3  0.4702      0.781 0.212  0 0.788
#> SRR1643173     3  0.4887      0.771 0.228  0 0.772
#> SRR1643174     3  0.4796      0.776 0.220  0 0.780
#> SRR1643175     1  0.0424      0.955 0.992  0 0.008
#> SRR1643176     1  0.0424      0.955 0.992  0 0.008
#> SRR1643177     1  0.0424      0.955 0.992  0 0.008
#> SRR1643178     1  0.0424      0.955 0.992  0 0.008
#> SRR1643180     3  0.5058      0.759 0.244  0 0.756
#> SRR1643181     3  0.5058      0.759 0.244  0 0.756
#> SRR1643182     3  0.5016      0.762 0.240  0 0.760
#> SRR1643183     1  0.5905      0.344 0.648  0 0.352
#> SRR1643184     1  0.6008      0.279 0.628  0 0.372
#> SRR1643185     1  0.6111      0.191 0.604  0 0.396
#> SRR1643186     1  0.6026      0.264 0.624  0 0.376
#> SRR1643187     1  0.0000      0.962 1.000  0 0.000
#> SRR1643188     1  0.0000      0.962 1.000  0 0.000
#> SRR1643189     1  0.0000      0.962 1.000  0 0.000
#> SRR1643190     1  0.0000      0.962 1.000  0 0.000
#> SRR1643191     3  0.6286      0.355 0.464  0 0.536
#> SRR1643192     3  0.6252      0.413 0.444  0 0.556
#> SRR1643193     1  0.0000      0.962 1.000  0 0.000
#> SRR1643194     1  0.0000      0.962 1.000  0 0.000
#> SRR1643195     1  0.0000      0.962 1.000  0 0.000
#> SRR1643196     1  0.0000      0.962 1.000  0 0.000
#> SRR1643197     1  0.0892      0.943 0.980  0 0.020
#> SRR1643198     1  0.0892      0.943 0.980  0 0.020
#> SRR1643199     1  0.2066      0.900 0.940  0 0.060
#> SRR1643200     1  0.2066      0.900 0.940  0 0.060
#> SRR1643201     1  0.0000      0.962 1.000  0 0.000
#> SRR1643202     1  0.0000      0.962 1.000  0 0.000
#> SRR1643203     1  0.0237      0.959 0.996  0 0.004
#> SRR1643204     1  0.0237      0.959 0.996  0 0.004
#> SRR1643205     3  0.0000      0.840 0.000  0 1.000
#> SRR1643206     3  0.0000      0.840 0.000  0 1.000
#> SRR1643207     3  0.0000      0.840 0.000  0 1.000
#> SRR1643208     3  0.0000      0.840 0.000  0 1.000
#> SRR1643209     3  0.0000      0.840 0.000  0 1.000
#> SRR1643210     3  0.0000      0.840 0.000  0 1.000
#> SRR1643211     3  0.0000      0.840 0.000  0 1.000
#> SRR1643212     3  0.0000      0.840 0.000  0 1.000
#> SRR1643213     3  0.0000      0.840 0.000  0 1.000
#> SRR1643214     3  0.0000      0.840 0.000  0 1.000
#> SRR1643215     3  0.0000      0.840 0.000  0 1.000
#> SRR1643216     3  0.0000      0.840 0.000  0 1.000
#> SRR1643217     3  0.0000      0.840 0.000  0 1.000
#> SRR1643218     3  0.0000      0.840 0.000  0 1.000
#> SRR1643219     3  0.0000      0.840 0.000  0 1.000
#> SRR1643220     3  0.0000      0.840 0.000  0 1.000
#> SRR1643221     3  0.0000      0.840 0.000  0 1.000
#> SRR1643222     3  0.0000      0.840 0.000  0 1.000
#> SRR1643223     3  0.0000      0.840 0.000  0 1.000
#> SRR1643224     3  0.0000      0.840 0.000  0 1.000
#> SRR1643225     3  0.0000      0.840 0.000  0 1.000
#> SRR1643226     3  0.0000      0.840 0.000  0 1.000
#> SRR1643227     3  0.0000      0.840 0.000  0 1.000
#> SRR1643228     3  0.0000      0.840 0.000  0 1.000
#> SRR1643229     3  0.0000      0.840 0.000  0 1.000
#> SRR1643230     3  0.0000      0.840 0.000  0 1.000
#> SRR1643231     3  0.0000      0.840 0.000  0 1.000
#> SRR1643232     3  0.0000      0.840 0.000  0 1.000
#> SRR1643233     3  0.0000      0.840 0.000  0 1.000
#> SRR1643234     3  0.0000      0.840 0.000  0 1.000
#> SRR1643235     3  0.0000      0.840 0.000  0 1.000
#> SRR1643236     3  0.0000      0.840 0.000  0 1.000
#> SRR1643237     3  0.0000      0.840 0.000  0 1.000
#> SRR1643238     3  0.0000      0.840 0.000  0 1.000
#> SRR1643239     3  0.0000      0.840 0.000  0 1.000
#> SRR1643240     3  0.0000      0.840 0.000  0 1.000
#> SRR1643241     3  0.0000      0.840 0.000  0 1.000
#> SRR1643242     3  0.0000      0.840 0.000  0 1.000
#> SRR1643243     3  0.0000      0.840 0.000  0 1.000
#> SRR1643245     3  0.0000      0.840 0.000  0 1.000
#> SRR1643246     3  0.0000      0.840 0.000  0 1.000
#> SRR1643247     3  0.0000      0.840 0.000  0 1.000
#> SRR1643248     3  0.0000      0.840 0.000  0 1.000
#> SRR1643249     3  0.0000      0.840 0.000  0 1.000
#> SRR1643250     1  0.0000      0.962 1.000  0 0.000
#> SRR1643251     1  0.0000      0.962 1.000  0 0.000
#> SRR1643252     1  0.0000      0.962 1.000  0 0.000
#> SRR1643253     1  0.0000      0.962 1.000  0 0.000
#> SRR1643254     1  0.0000      0.962 1.000  0 0.000
#> SRR1643255     1  0.0000      0.962 1.000  0 0.000
#> SRR1643256     1  0.0000      0.962 1.000  0 0.000
#> SRR1643257     1  0.0000      0.962 1.000  0 0.000
#> SRR1643258     1  0.0000      0.962 1.000  0 0.000
#> SRR1643259     1  0.0000      0.962 1.000  0 0.000
#> SRR1643260     1  0.0000      0.962 1.000  0 0.000
#> SRR1643261     1  0.0000      0.962 1.000  0 0.000
#> SRR1643262     1  0.0000      0.962 1.000  0 0.000
#> SRR1643263     1  0.0000      0.962 1.000  0 0.000
#> SRR1643264     1  0.0000      0.962 1.000  0 0.000
#> SRR1643266     1  0.0000      0.962 1.000  0 0.000
#> SRR1643267     1  0.0000      0.962 1.000  0 0.000
#> SRR1643268     1  0.0000      0.962 1.000  0 0.000
#> SRR1643269     1  0.0000      0.962 1.000  0 0.000
#> SRR1643270     1  0.0000      0.962 1.000  0 0.000
#> SRR1643271     1  0.0000      0.962 1.000  0 0.000
#> SRR1643272     1  0.0000      0.962 1.000  0 0.000
#> SRR1643273     1  0.0000      0.962 1.000  0 0.000
#> SRR1643274     1  0.0000      0.962 1.000  0 0.000
#> SRR1643275     1  0.0000      0.962 1.000  0 0.000
#> SRR1643276     1  0.0000      0.962 1.000  0 0.000
#> SRR1643277     1  0.0000      0.962 1.000  0 0.000
#> SRR1643278     1  0.0000      0.962 1.000  0 0.000
#> SRR1643279     1  0.0000      0.962 1.000  0 0.000
#> SRR1643280     1  0.0000      0.962 1.000  0 0.000
#> SRR1643281     1  0.0000      0.962 1.000  0 0.000
#> SRR1643282     1  0.0000      0.962 1.000  0 0.000
#> SRR1643283     1  0.0000      0.962 1.000  0 0.000
#> SRR1643284     1  0.0000      0.962 1.000  0 0.000
#> SRR1643285     1  0.0000      0.962 1.000  0 0.000
#> SRR1643286     1  0.0000      0.962 1.000  0 0.000
#> SRR1643287     1  0.0000      0.962 1.000  0 0.000
#> SRR1643288     1  0.0000      0.962 1.000  0 0.000
#> SRR1643289     1  0.0000      0.962 1.000  0 0.000
#> SRR1643290     1  0.0000      0.962 1.000  0 0.000
#> SRR1643291     1  0.0000      0.962 1.000  0 0.000
#> SRR1643292     1  0.0000      0.962 1.000  0 0.000
#> SRR1643293     1  0.0000      0.962 1.000  0 0.000
#> SRR1643294     1  0.0000      0.962 1.000  0 0.000
#> SRR1643295     1  0.0000      0.962 1.000  0 0.000
#> SRR1643296     1  0.0000      0.962 1.000  0 0.000
#> SRR1643297     1  0.0000      0.962 1.000  0 0.000
#> SRR1643298     1  0.0000      0.962 1.000  0 0.000
#> SRR1643299     1  0.0000      0.962 1.000  0 0.000
#> SRR1643300     1  0.0000      0.962 1.000  0 0.000
#> SRR1643301     1  0.0000      0.962 1.000  0 0.000
#> SRR1643302     1  0.0000      0.962 1.000  0 0.000
#> SRR1643303     1  0.0000      0.962 1.000  0 0.000
#> SRR1643304     1  0.0000      0.962 1.000  0 0.000
#> SRR1643305     1  0.0000      0.962 1.000  0 0.000
#> SRR1643306     1  0.0000      0.962 1.000  0 0.000
#> SRR1643307     1  0.0000      0.962 1.000  0 0.000
#> SRR1643308     1  0.0000      0.962 1.000  0 0.000
#> SRR1643309     1  0.0000      0.962 1.000  0 0.000
#> SRR1643310     1  0.0000      0.962 1.000  0 0.000
#> SRR1643311     1  0.0000      0.962 1.000  0 0.000
#> SRR1643312     1  0.0000      0.962 1.000  0 0.000
#> SRR1643313     1  0.0000      0.962 1.000  0 0.000
#> SRR1643314     1  0.0000      0.962 1.000  0 0.000
#> SRR1643315     1  0.0000      0.962 1.000  0 0.000
#> SRR1643316     1  0.0000      0.962 1.000  0 0.000
#> SRR1643317     1  0.0000      0.962 1.000  0 0.000
#> SRR1643318     1  0.0000      0.962 1.000  0 0.000
#> SRR1643319     1  0.0000      0.962 1.000  0 0.000
#> SRR1643320     1  0.0000      0.962 1.000  0 0.000
#> SRR1643321     1  0.0000      0.962 1.000  0 0.000
#> SRR1643322     1  0.0000      0.962 1.000  0 0.000
#> SRR1643323     1  0.0000      0.962 1.000  0 0.000
#> SRR1643324     1  0.0000      0.962 1.000  0 0.000
#> SRR1643325     1  0.0000      0.962 1.000  0 0.000
#> SRR1643326     1  0.0000      0.962 1.000  0 0.000
#> SRR1643327     1  0.0000      0.962 1.000  0 0.000
#> SRR1643328     3  0.5291      0.735 0.268  0 0.732
#> SRR1643329     3  0.5016      0.762 0.240  0 0.760
#> SRR1643330     3  0.4605      0.785 0.204  0 0.796
#> SRR1643331     3  0.6154      0.506 0.408  0 0.592
#> SRR1643332     3  0.4702      0.781 0.212  0 0.788
#> SRR1643333     3  0.6168      0.497 0.412  0 0.588
#> SRR1643334     3  0.6111      0.533 0.396  0 0.604
#> SRR1643335     3  0.6215      0.457 0.428  0 0.572
#> SRR1643336     3  0.5988      0.589 0.368  0 0.632
#> SRR1643337     3  0.6079      0.550 0.388  0 0.612
#> SRR1643338     3  0.5621      0.686 0.308  0 0.692
#> SRR1643339     3  0.5968      0.596 0.364  0 0.636
#> SRR1643340     3  0.6235      0.436 0.436  0 0.564
#> SRR1643341     3  0.5706      0.668 0.320  0 0.680
#> SRR1643342     3  0.5968      0.596 0.364  0 0.636
#> SRR1643343     1  0.0000      0.962 1.000  0 0.000
#> SRR1643344     1  0.0000      0.962 1.000  0 0.000
#> SRR1643345     1  0.0000      0.962 1.000  0 0.000
#> SRR1643346     1  0.0000      0.962 1.000  0 0.000
#> SRR1643347     1  0.0000      0.962 1.000  0 0.000
#> SRR1643348     1  0.0000      0.962 1.000  0 0.000
#> SRR1643349     1  0.0000      0.962 1.000  0 0.000
#> SRR1643350     1  0.0000      0.962 1.000  0 0.000
#> SRR1643351     1  0.0000      0.962 1.000  0 0.000
#> SRR1643352     1  0.0000      0.962 1.000  0 0.000
#> SRR1643353     1  0.0000      0.962 1.000  0 0.000
#> SRR1643354     1  0.0000      0.962 1.000  0 0.000
#> SRR1643355     1  0.0000      0.962 1.000  0 0.000
#> SRR1643356     1  0.0000      0.962 1.000  0 0.000
#> SRR1643357     1  0.0000      0.962 1.000  0 0.000
#> SRR1643358     1  0.0000      0.962 1.000  0 0.000
#> SRR1643359     1  0.0000      0.962 1.000  0 0.000
#> SRR1643360     1  0.0000      0.962 1.000  0 0.000
#> SRR1643361     1  0.0000      0.962 1.000  0 0.000
#> SRR1643362     1  0.0000      0.962 1.000  0 0.000
#> SRR1643363     1  0.0000      0.962 1.000  0 0.000
#> SRR1643364     1  0.0000      0.962 1.000  0 0.000
#> SRR1643365     1  0.0000      0.962 1.000  0 0.000
#> SRR1643366     1  0.0000      0.962 1.000  0 0.000
#> SRR1643367     1  0.0000      0.962 1.000  0 0.000
#> SRR1643368     1  0.0000      0.962 1.000  0 0.000
#> SRR1643369     1  0.0000      0.962 1.000  0 0.000
#> SRR1643370     1  0.0000      0.962 1.000  0 0.000
#> SRR1643371     1  0.0000      0.962 1.000  0 0.000
#> SRR1643372     1  0.0000      0.962 1.000  0 0.000
#> SRR1643373     1  0.0000      0.962 1.000  0 0.000
#> SRR1643374     1  0.0000      0.962 1.000  0 0.000
#> SRR1643375     1  0.0000      0.962 1.000  0 0.000
#> SRR1643376     1  0.0000      0.962 1.000  0 0.000
#> SRR1643377     1  0.0000      0.962 1.000  0 0.000
#> SRR1643378     1  0.0000      0.962 1.000  0 0.000
#> SRR1643379     1  0.0000      0.962 1.000  0 0.000
#> SRR1643380     1  0.0000      0.962 1.000  0 0.000
#> SRR1643381     1  0.0000      0.962 1.000  0 0.000
#> SRR1643382     1  0.0000      0.962 1.000  0 0.000
#> SRR1643383     1  0.0000      0.962 1.000  0 0.000
#> SRR1643384     1  0.0000      0.962 1.000  0 0.000
#> SRR1643385     1  0.0000      0.962 1.000  0 0.000
#> SRR1643386     1  0.0000      0.962 1.000  0 0.000
#> SRR1643387     1  0.0000      0.962 1.000  0 0.000
#> SRR1643388     1  0.0000      0.962 1.000  0 0.000
#> SRR1643389     1  0.0000      0.962 1.000  0 0.000
#> SRR1643390     1  0.5529      0.502 0.704  0 0.296
#> SRR1643391     1  0.5138      0.602 0.748  0 0.252
#> SRR1643392     1  0.5785      0.406 0.668  0 0.332
#> SRR1643393     1  0.5560      0.492 0.700  0 0.300
#> SRR1643394     1  0.5216      0.585 0.740  0 0.260
#> SRR1643395     1  0.5560      0.492 0.700  0 0.300
#> SRR1643396     1  0.4291      0.734 0.820  0 0.180
#> SRR1643397     1  0.4974      0.634 0.764  0 0.236
#> SRR1643398     1  0.4750      0.672 0.784  0 0.216
#> SRR1643399     1  0.4842      0.658 0.776  0 0.224
#> SRR1643400     1  0.5859      0.371 0.656  0 0.344
#> SRR1643401     1  0.5678      0.451 0.684  0 0.316
#> SRR1643402     1  0.4291      0.734 0.820  0 0.180
#> SRR1643403     1  0.5785      0.406 0.668  0 0.332
#> SRR1643404     1  0.5098      0.610 0.752  0 0.248
#> SRR1643405     3  0.5098      0.755 0.248  0 0.752
#> SRR1643406     3  0.5016      0.762 0.240  0 0.760
#> SRR1643407     3  0.5254      0.739 0.264  0 0.736
#> SRR1643408     3  0.4504      0.788 0.196  0 0.804
#> SRR1643409     3  0.5621      0.687 0.308  0 0.692
#> SRR1643410     3  0.6180      0.487 0.416  0 0.584
#> SRR1643411     3  0.4750      0.779 0.216  0 0.784
#> SRR1643412     3  0.4842      0.774 0.224  0 0.776
#> SRR1643413     3  0.5591      0.692 0.304  0 0.696
#> SRR1643414     3  0.5560      0.697 0.300  0 0.700
#> SRR1643415     3  0.4555      0.786 0.200  0 0.800
#> SRR1643416     3  0.5431      0.717 0.284  0 0.716
#> SRR1643417     3  0.5098      0.755 0.248  0 0.752
#> SRR1643418     1  0.0000      0.962 1.000  0 0.000
#> SRR1643419     1  0.0000      0.962 1.000  0 0.000
#> SRR1643420     1  0.0000      0.962 1.000  0 0.000
#> SRR1643421     1  0.0000      0.962 1.000  0 0.000
#> SRR1643422     1  0.0000      0.962 1.000  0 0.000
#> SRR1643423     1  0.0000      0.962 1.000  0 0.000
#> SRR1643424     1  0.0000      0.962 1.000  0 0.000
#> SRR1643425     1  0.0000      0.962 1.000  0 0.000
#> SRR1643426     1  0.0000      0.962 1.000  0 0.000
#> SRR1643427     1  0.0000      0.962 1.000  0 0.000
#> SRR1643428     1  0.0000      0.962 1.000  0 0.000
#> SRR1643429     1  0.0000      0.962 1.000  0 0.000
#> SRR1643430     1  0.0000      0.962 1.000  0 0.000
#> SRR1643431     1  0.0000      0.962 1.000  0 0.000
#> SRR1643432     1  0.0000      0.962 1.000  0 0.000
#> SRR1643433     1  0.0000      0.962 1.000  0 0.000
#> SRR1643434     1  0.0000      0.962 1.000  0 0.000
#> SRR1643435     1  0.0000      0.962 1.000  0 0.000
#> SRR1643436     1  0.0000      0.962 1.000  0 0.000
#> SRR1643437     1  0.0000      0.962 1.000  0 0.000
#> SRR1643438     1  0.0000      0.962 1.000  0 0.000
#> SRR1643439     1  0.0000      0.962 1.000  0 0.000
#> SRR1643440     1  0.0000      0.962 1.000  0 0.000
#> SRR1643441     1  0.0000      0.962 1.000  0 0.000
#> SRR1643442     1  0.0000      0.962 1.000  0 0.000
#> SRR1643443     2  0.0000      1.000 0.000  1 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1 0.000
#> SRR1643505     2  0.0000      1.000 0.000  1 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1 0.000

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1    p2    p3    p4
#> SRR1643167     1  0.0376      0.918 0.992 0.000 0.004 0.004
#> SRR1643168     1  0.0376      0.918 0.992 0.000 0.004 0.004
#> SRR1643169     1  0.0376      0.918 0.992 0.000 0.004 0.004
#> SRR1643170     1  0.0376      0.918 0.992 0.000 0.004 0.004
#> SRR1643171     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643172     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643173     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643174     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643175     1  0.1302      0.913 0.956 0.000 0.000 0.044
#> SRR1643176     1  0.1389      0.912 0.952 0.000 0.000 0.048
#> SRR1643177     1  0.1302      0.913 0.956 0.000 0.000 0.044
#> SRR1643178     1  0.1302      0.913 0.956 0.000 0.000 0.044
#> SRR1643180     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643181     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643182     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643183     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643184     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643185     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643186     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643187     1  0.1118      0.914 0.964 0.000 0.000 0.036
#> SRR1643188     1  0.1118      0.914 0.964 0.000 0.000 0.036
#> SRR1643189     1  0.1118      0.914 0.964 0.000 0.000 0.036
#> SRR1643190     1  0.1118      0.914 0.964 0.000 0.000 0.036
#> SRR1643191     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643192     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643193     1  0.0817      0.916 0.976 0.000 0.000 0.024
#> SRR1643194     1  0.0817      0.916 0.976 0.000 0.000 0.024
#> SRR1643195     1  0.4746      0.493 0.632 0.000 0.000 0.368
#> SRR1643196     1  0.4746      0.493 0.632 0.000 0.000 0.368
#> SRR1643197     1  0.0336      0.918 0.992 0.000 0.000 0.008
#> SRR1643198     1  0.0336      0.918 0.992 0.000 0.000 0.008
#> SRR1643199     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643200     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643201     1  0.2011      0.902 0.920 0.000 0.000 0.080
#> SRR1643202     1  0.2011      0.902 0.920 0.000 0.000 0.080
#> SRR1643203     1  0.0336      0.918 0.992 0.000 0.000 0.008
#> SRR1643204     1  0.0336      0.918 0.992 0.000 0.000 0.008
#> SRR1643205     3  0.0707      0.993 0.020 0.000 0.980 0.000
#> SRR1643206     3  0.0707      0.993 0.020 0.000 0.980 0.000
#> SRR1643207     3  0.0707      0.993 0.020 0.000 0.980 0.000
#> SRR1643208     3  0.0707      0.993 0.020 0.000 0.980 0.000
#> SRR1643209     3  0.0921      0.989 0.028 0.000 0.972 0.000
#> SRR1643210     3  0.0921      0.989 0.028 0.000 0.972 0.000
#> SRR1643211     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643212     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643213     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643214     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643215     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643216     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643217     3  0.0592      0.994 0.016 0.000 0.984 0.000
#> SRR1643218     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643219     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643220     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643221     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643222     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643223     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643224     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643225     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643226     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643227     3  0.0707      0.993 0.020 0.000 0.980 0.000
#> SRR1643228     3  0.0707      0.993 0.020 0.000 0.980 0.000
#> SRR1643229     3  0.0921      0.989 0.028 0.000 0.972 0.000
#> SRR1643230     3  0.0707      0.993 0.020 0.000 0.980 0.000
#> SRR1643231     3  0.0707      0.993 0.020 0.000 0.980 0.000
#> SRR1643232     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643233     3  0.1022      0.986 0.032 0.000 0.968 0.000
#> SRR1643234     3  0.1022      0.986 0.032 0.000 0.968 0.000
#> SRR1643235     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643236     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643237     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643238     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643239     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643240     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643241     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643242     3  0.1022      0.986 0.032 0.000 0.968 0.000
#> SRR1643243     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643245     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643246     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643247     3  0.0469      0.995 0.012 0.000 0.988 0.000
#> SRR1643248     3  0.0817      0.991 0.024 0.000 0.976 0.000
#> SRR1643249     3  0.1637      0.961 0.060 0.000 0.940 0.000
#> SRR1643250     4  0.1716      0.934 0.064 0.000 0.000 0.936
#> SRR1643251     4  0.1716      0.934 0.064 0.000 0.000 0.936
#> SRR1643252     4  0.1716      0.934 0.064 0.000 0.000 0.936
#> SRR1643253     4  0.1716      0.934 0.064 0.000 0.000 0.936
#> SRR1643254     4  0.1792      0.930 0.068 0.000 0.000 0.932
#> SRR1643255     4  0.1716      0.934 0.064 0.000 0.000 0.936
#> SRR1643256     4  0.1716      0.934 0.064 0.000 0.000 0.936
#> SRR1643257     4  0.1716      0.934 0.064 0.000 0.000 0.936
#> SRR1643258     4  0.1792      0.930 0.068 0.000 0.000 0.932
#> SRR1643259     4  0.1716      0.934 0.064 0.000 0.000 0.936
#> SRR1643260     4  0.1716      0.934 0.064 0.000 0.000 0.936
#> SRR1643261     4  0.1716      0.934 0.064 0.000 0.000 0.936
#> SRR1643262     4  0.1302      0.946 0.044 0.000 0.000 0.956
#> SRR1643263     4  0.1302      0.946 0.044 0.000 0.000 0.956
#> SRR1643264     4  0.1302      0.946 0.044 0.000 0.000 0.956
#> SRR1643266     4  0.1118      0.950 0.036 0.000 0.000 0.964
#> SRR1643267     4  0.1302      0.946 0.044 0.000 0.000 0.956
#> SRR1643268     4  0.1302      0.946 0.044 0.000 0.000 0.956
#> SRR1643269     4  0.1302      0.946 0.044 0.000 0.000 0.956
#> SRR1643270     4  0.1302      0.946 0.044 0.000 0.000 0.956
#> SRR1643271     4  0.1302      0.946 0.044 0.000 0.000 0.956
#> SRR1643272     4  0.1302      0.946 0.044 0.000 0.000 0.956
#> SRR1643273     1  0.3764      0.796 0.784 0.000 0.000 0.216
#> SRR1643274     1  0.4222      0.710 0.728 0.000 0.000 0.272
#> SRR1643275     1  0.4040      0.749 0.752 0.000 0.000 0.248
#> SRR1643276     1  0.4193      0.717 0.732 0.000 0.000 0.268
#> SRR1643277     1  0.3726      0.801 0.788 0.000 0.000 0.212
#> SRR1643278     1  0.3486      0.829 0.812 0.000 0.000 0.188
#> SRR1643279     1  0.3801      0.790 0.780 0.000 0.000 0.220
#> SRR1643280     1  0.3873      0.779 0.772 0.000 0.000 0.228
#> SRR1643281     1  0.3726      0.801 0.788 0.000 0.000 0.212
#> SRR1643282     1  0.3726      0.801 0.788 0.000 0.000 0.212
#> SRR1643283     1  0.3486      0.829 0.812 0.000 0.000 0.188
#> SRR1643284     1  0.3649      0.811 0.796 0.000 0.000 0.204
#> SRR1643285     1  0.4134      0.730 0.740 0.000 0.000 0.260
#> SRR1643286     1  0.3356      0.842 0.824 0.000 0.000 0.176
#> SRR1643287     4  0.0707      0.949 0.020 0.000 0.000 0.980
#> SRR1643288     4  0.0707      0.949 0.020 0.000 0.000 0.980
#> SRR1643289     4  0.0707      0.949 0.020 0.000 0.000 0.980
#> SRR1643290     4  0.0707      0.949 0.020 0.000 0.000 0.980
#> SRR1643291     4  0.0707      0.949 0.020 0.000 0.000 0.980
#> SRR1643292     4  0.0707      0.949 0.020 0.000 0.000 0.980
#> SRR1643293     4  0.0921      0.951 0.028 0.000 0.000 0.972
#> SRR1643294     4  0.0817      0.950 0.024 0.000 0.000 0.976
#> SRR1643295     4  0.0707      0.949 0.020 0.000 0.000 0.980
#> SRR1643296     4  0.0817      0.950 0.024 0.000 0.000 0.976
#> SRR1643297     4  0.0707      0.949 0.020 0.000 0.000 0.980
#> SRR1643298     4  0.0707      0.949 0.020 0.000 0.000 0.980
#> SRR1643299     4  0.0707      0.949 0.020 0.000 0.000 0.980
#> SRR1643300     4  0.0817      0.950 0.024 0.000 0.000 0.976
#> SRR1643301     4  0.3726      0.762 0.212 0.000 0.000 0.788
#> SRR1643302     4  0.4250      0.650 0.276 0.000 0.000 0.724
#> SRR1643303     4  0.4008      0.709 0.244 0.000 0.000 0.756
#> SRR1643304     4  0.4164      0.673 0.264 0.000 0.000 0.736
#> SRR1643305     4  0.4522      0.554 0.320 0.000 0.000 0.680
#> SRR1643306     4  0.4193      0.666 0.268 0.000 0.000 0.732
#> SRR1643307     4  0.3649      0.773 0.204 0.000 0.000 0.796
#> SRR1643308     4  0.4304      0.633 0.284 0.000 0.000 0.716
#> SRR1643309     4  0.3569      0.784 0.196 0.000 0.000 0.804
#> SRR1643310     4  0.3801      0.748 0.220 0.000 0.000 0.780
#> SRR1643311     4  0.3649      0.773 0.204 0.000 0.000 0.796
#> SRR1643312     4  0.4761      0.417 0.372 0.000 0.000 0.628
#> SRR1643313     4  0.3764      0.755 0.216 0.000 0.000 0.784
#> SRR1643314     1  0.2868      0.876 0.864 0.000 0.000 0.136
#> SRR1643315     1  0.2921      0.873 0.860 0.000 0.000 0.140
#> SRR1643316     1  0.2760      0.881 0.872 0.000 0.000 0.128
#> SRR1643317     1  0.2814      0.879 0.868 0.000 0.000 0.132
#> SRR1643318     1  0.2760      0.881 0.872 0.000 0.000 0.128
#> SRR1643319     1  0.2704      0.883 0.876 0.000 0.000 0.124
#> SRR1643320     1  0.2704      0.883 0.876 0.000 0.000 0.124
#> SRR1643321     1  0.2868      0.876 0.864 0.000 0.000 0.136
#> SRR1643322     1  0.2814      0.879 0.868 0.000 0.000 0.132
#> SRR1643323     1  0.2814      0.879 0.868 0.000 0.000 0.132
#> SRR1643324     1  0.2760      0.881 0.872 0.000 0.000 0.128
#> SRR1643325     1  0.2760      0.881 0.872 0.000 0.000 0.128
#> SRR1643326     1  0.2868      0.876 0.864 0.000 0.000 0.136
#> SRR1643327     1  0.2704      0.883 0.876 0.000 0.000 0.124
#> SRR1643328     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643329     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643330     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643331     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643332     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643333     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643334     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643335     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643336     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643337     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643338     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643339     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643340     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643341     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643342     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643343     1  0.3172      0.858 0.840 0.000 0.000 0.160
#> SRR1643344     1  0.3074      0.865 0.848 0.000 0.000 0.152
#> SRR1643345     1  0.3219      0.854 0.836 0.000 0.000 0.164
#> SRR1643346     1  0.3123      0.862 0.844 0.000 0.000 0.156
#> SRR1643347     1  0.3172      0.858 0.840 0.000 0.000 0.160
#> SRR1643348     1  0.3172      0.858 0.840 0.000 0.000 0.160
#> SRR1643349     1  0.3074      0.865 0.848 0.000 0.000 0.152
#> SRR1643350     1  0.3074      0.865 0.848 0.000 0.000 0.152
#> SRR1643351     1  0.3074      0.865 0.848 0.000 0.000 0.152
#> SRR1643352     1  0.3074      0.865 0.848 0.000 0.000 0.152
#> SRR1643353     1  0.3074      0.865 0.848 0.000 0.000 0.152
#> SRR1643354     1  0.3123      0.862 0.844 0.000 0.000 0.156
#> SRR1643355     1  0.3074      0.865 0.848 0.000 0.000 0.152
#> SRR1643356     1  0.3123      0.862 0.844 0.000 0.000 0.156
#> SRR1643357     1  0.3219      0.854 0.836 0.000 0.000 0.164
#> SRR1643358     4  0.1022      0.951 0.032 0.000 0.000 0.968
#> SRR1643359     4  0.1118      0.950 0.036 0.000 0.000 0.964
#> SRR1643360     4  0.1022      0.951 0.032 0.000 0.000 0.968
#> SRR1643361     4  0.1118      0.950 0.036 0.000 0.000 0.964
#> SRR1643362     4  0.1022      0.951 0.032 0.000 0.000 0.968
#> SRR1643363     4  0.1022      0.951 0.032 0.000 0.000 0.968
#> SRR1643364     4  0.1022      0.951 0.032 0.000 0.000 0.968
#> SRR1643365     4  0.1022      0.951 0.032 0.000 0.000 0.968
#> SRR1643366     4  0.1022      0.951 0.032 0.000 0.000 0.968
#> SRR1643367     4  0.1022      0.951 0.032 0.000 0.000 0.968
#> SRR1643368     4  0.1118      0.950 0.036 0.000 0.000 0.964
#> SRR1643369     4  0.1022      0.951 0.032 0.000 0.000 0.968
#> SRR1643370     4  0.1022      0.951 0.032 0.000 0.000 0.968
#> SRR1643371     4  0.1022      0.951 0.032 0.000 0.000 0.968
#> SRR1643372     4  0.1022      0.951 0.032 0.000 0.000 0.968
#> SRR1643373     4  0.0817      0.951 0.024 0.000 0.000 0.976
#> SRR1643374     4  0.0817      0.951 0.024 0.000 0.000 0.976
#> SRR1643375     4  0.0921      0.951 0.028 0.000 0.000 0.972
#> SRR1643376     4  0.0817      0.951 0.024 0.000 0.000 0.976
#> SRR1643377     4  0.0817      0.951 0.024 0.000 0.000 0.976
#> SRR1643378     4  0.0921      0.951 0.028 0.000 0.000 0.972
#> SRR1643379     4  0.0817      0.951 0.024 0.000 0.000 0.976
#> SRR1643380     4  0.0921      0.951 0.028 0.000 0.000 0.972
#> SRR1643381     4  0.0817      0.951 0.024 0.000 0.000 0.976
#> SRR1643382     4  0.0817      0.951 0.024 0.000 0.000 0.976
#> SRR1643383     4  0.0921      0.951 0.028 0.000 0.000 0.972
#> SRR1643384     4  0.0817      0.951 0.024 0.000 0.000 0.976
#> SRR1643385     4  0.0921      0.951 0.028 0.000 0.000 0.972
#> SRR1643386     4  0.0817      0.951 0.024 0.000 0.000 0.976
#> SRR1643387     4  0.0921      0.951 0.028 0.000 0.000 0.972
#> SRR1643388     4  0.0921      0.951 0.028 0.000 0.000 0.972
#> SRR1643389     4  0.0817      0.951 0.024 0.000 0.000 0.976
#> SRR1643390     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643391     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643392     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643393     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643394     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643395     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643396     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643397     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643398     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643399     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643400     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643401     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643402     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643403     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643404     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643405     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643406     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643407     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643408     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643409     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643410     1  0.0188      0.918 0.996 0.000 0.000 0.004
#> SRR1643411     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643412     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643413     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643414     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643415     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643416     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643417     1  0.0188      0.917 0.996 0.000 0.004 0.000
#> SRR1643418     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643419     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643420     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643421     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643422     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643423     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643424     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643425     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643426     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643427     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643428     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643429     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643430     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643431     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643432     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643433     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643434     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643435     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643436     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643437     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643438     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643439     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643440     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643441     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643442     4  0.0336      0.943 0.008 0.000 0.000 0.992
#> SRR1643443     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643444     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643445     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643446     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643447     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643448     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643449     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643450     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643451     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643452     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643453     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643454     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643455     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643456     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643457     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643458     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643459     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643460     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643461     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643462     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643463     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643464     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643466     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643467     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643468     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643469     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643470     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643471     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643472     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643473     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643474     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643475     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643477     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643478     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643479     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643480     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643481     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643482     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643483     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643484     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643485     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643486     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643487     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643488     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643489     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643490     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643491     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643492     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643493     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643494     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643495     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643496     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643497     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643498     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643499     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643500     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643501     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643502     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643503     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643504     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643505     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643506     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643507     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643508     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643509     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643510     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643511     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643512     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643513     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643531     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643532     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643533     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643534     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643535     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643536     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643537     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643538     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643539     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643540     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643541     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643542     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643543     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643544     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643514     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643515     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643516     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643517     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643518     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643519     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643520     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643521     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643522     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643523     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643524     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643525     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643526     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643527     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643528     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643529     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643530     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643545     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643546     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643547     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643548     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643549     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643550     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643551     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643552     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643553     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643554     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643555     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643556     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643558     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643559     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643560     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643561     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643562     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643563     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643564     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643565     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643566     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643567     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643568     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643569     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643570     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643571     2  0.0376      0.996 0.004 0.992 0.000 0.004
#> SRR1643572     2  0.0376      0.996 0.004 0.992 0.000 0.004

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1    p2    p3    p4    p5
#> SRR1643167     1  0.4434      0.262 0.536 0.000 0.004 0.000 0.460
#> SRR1643168     1  0.4434      0.262 0.536 0.000 0.004 0.000 0.460
#> SRR1643169     1  0.4434      0.262 0.536 0.000 0.004 0.000 0.460
#> SRR1643170     1  0.4434      0.262 0.536 0.000 0.004 0.000 0.460
#> SRR1643171     1  0.4655      0.228 0.512 0.000 0.012 0.000 0.476
#> SRR1643172     1  0.4744      0.217 0.508 0.000 0.016 0.000 0.476
#> SRR1643173     1  0.4744      0.217 0.508 0.000 0.016 0.000 0.476
#> SRR1643174     1  0.4655      0.228 0.512 0.000 0.012 0.000 0.476
#> SRR1643175     1  0.4607      0.447 0.616 0.000 0.012 0.004 0.368
#> SRR1643176     1  0.4505      0.447 0.620 0.000 0.008 0.004 0.368
#> SRR1643177     1  0.4505      0.447 0.620 0.000 0.008 0.004 0.368
#> SRR1643178     1  0.4505      0.447 0.620 0.000 0.008 0.004 0.368
#> SRR1643180     1  0.4747      0.150 0.496 0.000 0.016 0.000 0.488
#> SRR1643181     1  0.4747      0.150 0.496 0.000 0.016 0.000 0.488
#> SRR1643182     1  0.4747      0.150 0.496 0.000 0.016 0.000 0.488
#> SRR1643183     1  0.4659      0.159 0.496 0.000 0.012 0.000 0.492
#> SRR1643184     1  0.4659      0.159 0.496 0.000 0.012 0.000 0.492
#> SRR1643185     1  0.4659      0.159 0.496 0.000 0.012 0.000 0.492
#> SRR1643186     1  0.4659      0.159 0.496 0.000 0.012 0.000 0.492
#> SRR1643187     1  0.4276      0.423 0.616 0.000 0.000 0.004 0.380
#> SRR1643188     1  0.4276      0.423 0.616 0.000 0.000 0.004 0.380
#> SRR1643189     1  0.4276      0.423 0.616 0.000 0.000 0.004 0.380
#> SRR1643190     1  0.4138      0.426 0.616 0.000 0.000 0.000 0.384
#> SRR1643191     1  0.4803      0.310 0.536 0.000 0.020 0.000 0.444
#> SRR1643192     1  0.4803      0.310 0.536 0.000 0.020 0.000 0.444
#> SRR1643193     1  0.4397      0.321 0.564 0.000 0.000 0.004 0.432
#> SRR1643194     1  0.4397      0.321 0.564 0.000 0.000 0.004 0.432
#> SRR1643195     5  0.6680      0.987 0.348 0.000 0.000 0.240 0.412
#> SRR1643196     5  0.6667      0.987 0.348 0.000 0.000 0.236 0.416
#> SRR1643197     1  0.4425      0.423 0.600 0.000 0.008 0.000 0.392
#> SRR1643198     1  0.4425      0.423 0.600 0.000 0.008 0.000 0.392
#> SRR1643199     1  0.4446      0.230 0.520 0.000 0.004 0.000 0.476
#> SRR1643200     1  0.4448      0.219 0.516 0.000 0.004 0.000 0.480
#> SRR1643201     1  0.4702      0.189 0.512 0.000 0.004 0.008 0.476
#> SRR1643202     1  0.4702      0.189 0.512 0.000 0.004 0.008 0.476
#> SRR1643203     1  0.4161      0.415 0.608 0.000 0.000 0.000 0.392
#> SRR1643204     1  0.4161      0.415 0.608 0.000 0.000 0.000 0.392
#> SRR1643205     3  0.0290      0.990 0.000 0.000 0.992 0.000 0.008
#> SRR1643206     3  0.0290      0.990 0.000 0.000 0.992 0.000 0.008
#> SRR1643207     3  0.0290      0.990 0.000 0.000 0.992 0.000 0.008
#> SRR1643208     3  0.0290      0.990 0.000 0.000 0.992 0.000 0.008
#> SRR1643209     3  0.0290      0.992 0.000 0.000 0.992 0.000 0.008
#> SRR1643210     3  0.0290      0.992 0.000 0.000 0.992 0.000 0.008
#> SRR1643211     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643212     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643213     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643214     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643215     3  0.0794      0.985 0.000 0.000 0.972 0.000 0.028
#> SRR1643216     3  0.0703      0.987 0.000 0.000 0.976 0.000 0.024
#> SRR1643217     3  0.0794      0.985 0.000 0.000 0.972 0.000 0.028
#> SRR1643218     3  0.0794      0.985 0.000 0.000 0.972 0.000 0.028
#> SRR1643219     3  0.0609      0.988 0.000 0.000 0.980 0.000 0.020
#> SRR1643220     3  0.0609      0.988 0.000 0.000 0.980 0.000 0.020
#> SRR1643221     3  0.0162      0.992 0.000 0.000 0.996 0.000 0.004
#> SRR1643222     3  0.0162      0.992 0.000 0.000 0.996 0.000 0.004
#> SRR1643223     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643224     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643225     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643226     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643227     3  0.0510      0.988 0.000 0.000 0.984 0.000 0.016
#> SRR1643228     3  0.0510      0.988 0.000 0.000 0.984 0.000 0.016
#> SRR1643229     3  0.0404      0.989 0.000 0.000 0.988 0.000 0.012
#> SRR1643230     3  0.0290      0.990 0.000 0.000 0.992 0.000 0.008
#> SRR1643231     3  0.0290      0.990 0.000 0.000 0.992 0.000 0.008
#> SRR1643232     3  0.0162      0.992 0.000 0.000 0.996 0.000 0.004
#> SRR1643233     3  0.0404      0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643234     3  0.0404      0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643235     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000
#> SRR1643236     3  0.0290      0.990 0.000 0.000 0.992 0.000 0.008
#> SRR1643237     3  0.0290      0.990 0.000 0.000 0.992 0.000 0.008
#> SRR1643238     3  0.0404      0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643239     3  0.0404      0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643240     3  0.0404      0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643241     3  0.0404      0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643242     3  0.0404      0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643243     3  0.0404      0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643245     3  0.0404      0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643246     3  0.0404      0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643247     3  0.0404      0.991 0.000 0.000 0.988 0.000 0.012
#> SRR1643248     3  0.0404      0.989 0.000 0.000 0.988 0.000 0.012
#> SRR1643249     3  0.1851      0.932 0.000 0.000 0.912 0.000 0.088
#> SRR1643250     4  0.0693      0.919 0.008 0.000 0.000 0.980 0.012
#> SRR1643251     4  0.0807      0.917 0.012 0.000 0.000 0.976 0.012
#> SRR1643252     4  0.0693      0.919 0.008 0.000 0.000 0.980 0.012
#> SRR1643253     4  0.0807      0.917 0.012 0.000 0.000 0.976 0.012
#> SRR1643254     4  0.0912      0.915 0.016 0.000 0.000 0.972 0.012
#> SRR1643255     4  0.0693      0.919 0.008 0.000 0.000 0.980 0.012
#> SRR1643256     4  0.0912      0.915 0.016 0.000 0.000 0.972 0.012
#> SRR1643257     4  0.0807      0.917 0.012 0.000 0.000 0.976 0.012
#> SRR1643258     4  0.0807      0.917 0.012 0.000 0.000 0.976 0.012
#> SRR1643259     4  0.0807      0.917 0.012 0.000 0.000 0.976 0.012
#> SRR1643260     4  0.0807      0.917 0.012 0.000 0.000 0.976 0.012
#> SRR1643261     4  0.0807      0.917 0.012 0.000 0.000 0.976 0.012
#> SRR1643262     4  0.0451      0.922 0.008 0.000 0.000 0.988 0.004
#> SRR1643263     4  0.0451      0.922 0.008 0.000 0.000 0.988 0.004
#> SRR1643264     4  0.0451      0.922 0.008 0.000 0.000 0.988 0.004
#> SRR1643266     4  0.0324      0.922 0.004 0.000 0.000 0.992 0.004
#> SRR1643267     4  0.0451      0.922 0.008 0.000 0.000 0.988 0.004
#> SRR1643268     4  0.0451      0.922 0.008 0.000 0.000 0.988 0.004
#> SRR1643269     4  0.0451      0.922 0.008 0.000 0.000 0.988 0.004
#> SRR1643270     4  0.0451      0.922 0.008 0.000 0.000 0.988 0.004
#> SRR1643271     4  0.0451      0.922 0.008 0.000 0.000 0.988 0.004
#> SRR1643272     4  0.0451      0.922 0.008 0.000 0.000 0.988 0.004
#> SRR1643273     1  0.2110      0.365 0.912 0.000 0.000 0.072 0.016
#> SRR1643274     1  0.2669      0.293 0.876 0.000 0.000 0.104 0.020
#> SRR1643275     1  0.2597      0.321 0.884 0.000 0.000 0.092 0.024
#> SRR1643276     1  0.2915      0.267 0.860 0.000 0.000 0.116 0.024
#> SRR1643277     1  0.2079      0.379 0.916 0.000 0.000 0.064 0.020
#> SRR1643278     1  0.2012      0.387 0.920 0.000 0.000 0.060 0.020
#> SRR1643279     1  0.2144      0.376 0.912 0.000 0.000 0.068 0.020
#> SRR1643280     1  0.2423      0.349 0.896 0.000 0.000 0.080 0.024
#> SRR1643281     1  0.2331      0.353 0.900 0.000 0.000 0.080 0.020
#> SRR1643282     1  0.2079      0.381 0.916 0.000 0.000 0.064 0.020
#> SRR1643283     1  0.2012      0.387 0.920 0.000 0.000 0.060 0.020
#> SRR1643284     1  0.2208      0.369 0.908 0.000 0.000 0.072 0.020
#> SRR1643285     1  0.2795      0.300 0.872 0.000 0.000 0.100 0.028
#> SRR1643286     1  0.2104      0.389 0.916 0.000 0.000 0.060 0.024
#> SRR1643287     4  0.3527      0.754 0.192 0.000 0.000 0.792 0.016
#> SRR1643288     4  0.3527      0.754 0.192 0.000 0.000 0.792 0.016
#> SRR1643289     4  0.3419      0.768 0.180 0.000 0.000 0.804 0.016
#> SRR1643290     4  0.3527      0.754 0.192 0.000 0.000 0.792 0.016
#> SRR1643291     4  0.3492      0.759 0.188 0.000 0.000 0.796 0.016
#> SRR1643292     4  0.3381      0.772 0.176 0.000 0.000 0.808 0.016
#> SRR1643293     4  0.3527      0.754 0.192 0.000 0.000 0.792 0.016
#> SRR1643294     4  0.3527      0.754 0.192 0.000 0.000 0.792 0.016
#> SRR1643295     4  0.3663      0.732 0.208 0.000 0.000 0.776 0.016
#> SRR1643296     4  0.3562      0.749 0.196 0.000 0.000 0.788 0.016
#> SRR1643297     4  0.3527      0.754 0.192 0.000 0.000 0.792 0.016
#> SRR1643298     4  0.3562      0.748 0.196 0.000 0.000 0.788 0.016
#> SRR1643299     4  0.3527      0.754 0.192 0.000 0.000 0.792 0.016
#> SRR1643300     4  0.3492      0.759 0.188 0.000 0.000 0.796 0.016
#> SRR1643301     4  0.2864      0.783 0.136 0.000 0.000 0.852 0.012
#> SRR1643302     4  0.3779      0.641 0.200 0.000 0.000 0.776 0.024
#> SRR1643303     4  0.3724      0.641 0.204 0.000 0.000 0.776 0.020
#> SRR1643304     4  0.3612      0.694 0.172 0.000 0.000 0.800 0.028
#> SRR1643305     4  0.4221      0.528 0.236 0.000 0.000 0.732 0.032
#> SRR1643306     4  0.3690      0.653 0.200 0.000 0.000 0.780 0.020
#> SRR1643307     4  0.2966      0.776 0.136 0.000 0.000 0.848 0.016
#> SRR1643308     4  0.4352      0.500 0.244 0.000 0.000 0.720 0.036
#> SRR1643309     4  0.2825      0.800 0.124 0.000 0.000 0.860 0.016
#> SRR1643310     4  0.3152      0.766 0.136 0.000 0.000 0.840 0.024
#> SRR1643311     4  0.2624      0.808 0.116 0.000 0.000 0.872 0.012
#> SRR1643312     4  0.5122      0.165 0.312 0.000 0.000 0.628 0.060
#> SRR1643313     4  0.3224      0.734 0.160 0.000 0.000 0.824 0.016
#> SRR1643314     1  0.4264      0.433 0.620 0.000 0.000 0.004 0.376
#> SRR1643315     1  0.4264      0.433 0.620 0.000 0.000 0.004 0.376
#> SRR1643316     1  0.4264      0.433 0.620 0.000 0.000 0.004 0.376
#> SRR1643317     1  0.4264      0.433 0.620 0.000 0.000 0.004 0.376
#> SRR1643318     1  0.4402      0.440 0.620 0.000 0.004 0.004 0.372
#> SRR1643319     1  0.4414      0.436 0.616 0.000 0.004 0.004 0.376
#> SRR1643320     1  0.4264      0.433 0.620 0.000 0.000 0.004 0.376
#> SRR1643321     1  0.4251      0.437 0.624 0.000 0.000 0.004 0.372
#> SRR1643322     1  0.4264      0.433 0.620 0.000 0.000 0.004 0.376
#> SRR1643323     1  0.4414      0.436 0.616 0.000 0.004 0.004 0.376
#> SRR1643324     1  0.4264      0.433 0.620 0.000 0.000 0.004 0.376
#> SRR1643325     1  0.4414      0.436 0.616 0.000 0.004 0.004 0.376
#> SRR1643326     1  0.4264      0.433 0.620 0.000 0.000 0.004 0.376
#> SRR1643327     1  0.4264      0.433 0.620 0.000 0.000 0.004 0.376
#> SRR1643328     1  0.4497      0.456 0.632 0.000 0.016 0.000 0.352
#> SRR1643329     1  0.4538      0.449 0.620 0.000 0.016 0.000 0.364
#> SRR1643330     1  0.4525      0.452 0.624 0.000 0.016 0.000 0.360
#> SRR1643331     1  0.4511      0.454 0.628 0.000 0.016 0.000 0.356
#> SRR1643332     1  0.4497      0.456 0.632 0.000 0.016 0.000 0.352
#> SRR1643333     1  0.4525      0.452 0.624 0.000 0.016 0.000 0.360
#> SRR1643334     1  0.4525      0.452 0.624 0.000 0.016 0.000 0.360
#> SRR1643335     1  0.4525      0.452 0.624 0.000 0.016 0.000 0.360
#> SRR1643336     1  0.4497      0.456 0.632 0.000 0.016 0.000 0.352
#> SRR1643337     1  0.4511      0.454 0.628 0.000 0.016 0.000 0.356
#> SRR1643338     1  0.4525      0.452 0.624 0.000 0.016 0.000 0.360
#> SRR1643339     1  0.4511      0.454 0.628 0.000 0.016 0.000 0.356
#> SRR1643340     1  0.4538      0.449 0.620 0.000 0.016 0.000 0.364
#> SRR1643341     1  0.4538      0.449 0.620 0.000 0.016 0.000 0.364
#> SRR1643342     1  0.4525      0.452 0.624 0.000 0.016 0.000 0.360
#> SRR1643343     1  0.2853      0.387 0.884 0.000 0.008 0.040 0.068
#> SRR1643344     1  0.2929      0.380 0.880 0.000 0.008 0.044 0.068
#> SRR1643345     1  0.2775      0.392 0.888 0.000 0.008 0.036 0.068
#> SRR1643346     1  0.2853      0.386 0.884 0.000 0.008 0.040 0.068
#> SRR1643347     1  0.2710      0.394 0.892 0.000 0.008 0.036 0.064
#> SRR1643348     1  0.2989      0.384 0.880 0.000 0.016 0.036 0.068
#> SRR1643349     1  0.2929      0.380 0.880 0.000 0.008 0.044 0.068
#> SRR1643350     1  0.2710      0.394 0.892 0.000 0.008 0.036 0.064
#> SRR1643351     1  0.2629      0.399 0.896 0.000 0.008 0.032 0.064
#> SRR1643352     1  0.2710      0.394 0.892 0.000 0.008 0.036 0.064
#> SRR1643353     1  0.2822      0.391 0.888 0.000 0.012 0.036 0.064
#> SRR1643354     1  0.2965      0.383 0.880 0.000 0.012 0.040 0.068
#> SRR1643355     1  0.2788      0.389 0.888 0.000 0.008 0.040 0.064
#> SRR1643356     1  0.2965      0.382 0.880 0.000 0.012 0.040 0.068
#> SRR1643357     1  0.2989      0.384 0.880 0.000 0.016 0.036 0.068
#> SRR1643358     4  0.0162      0.921 0.000 0.000 0.000 0.996 0.004
#> SRR1643359     4  0.0162      0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643360     4  0.0290      0.922 0.000 0.000 0.000 0.992 0.008
#> SRR1643361     4  0.0162      0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643362     4  0.0162      0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643363     4  0.0162      0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643364     4  0.0290      0.922 0.000 0.000 0.000 0.992 0.008
#> SRR1643365     4  0.0162      0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643366     4  0.0162      0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643367     4  0.0162      0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643368     4  0.0162      0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643369     4  0.0162      0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643370     4  0.0162      0.923 0.000 0.000 0.000 0.996 0.004
#> SRR1643371     4  0.0000      0.922 0.000 0.000 0.000 1.000 0.000
#> SRR1643372     4  0.0000      0.922 0.000 0.000 0.000 1.000 0.000
#> SRR1643373     4  0.0566      0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643374     4  0.0566      0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643375     4  0.0566      0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643376     4  0.0566      0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643377     4  0.0566      0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643378     4  0.0566      0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643379     4  0.0566      0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643380     4  0.0566      0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643381     4  0.0566      0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643382     4  0.0566      0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643383     4  0.0566      0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643384     4  0.0566      0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643385     4  0.0566      0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643386     4  0.0566      0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643387     4  0.0566      0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643388     4  0.0566      0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643389     4  0.0566      0.921 0.004 0.000 0.000 0.984 0.012
#> SRR1643390     1  0.3318      0.483 0.808 0.000 0.012 0.000 0.180
#> SRR1643391     1  0.3659      0.483 0.768 0.000 0.012 0.000 0.220
#> SRR1643392     1  0.3427      0.485 0.796 0.000 0.012 0.000 0.192
#> SRR1643393     1  0.3353      0.486 0.796 0.000 0.008 0.000 0.196
#> SRR1643394     1  0.3318      0.486 0.800 0.000 0.008 0.000 0.192
#> SRR1643395     1  0.3462      0.486 0.792 0.000 0.012 0.000 0.196
#> SRR1643396     1  0.3318      0.486 0.800 0.000 0.008 0.000 0.192
#> SRR1643397     1  0.3487      0.485 0.780 0.000 0.008 0.000 0.212
#> SRR1643398     1  0.3421      0.486 0.788 0.000 0.008 0.000 0.204
#> SRR1643399     1  0.3582      0.482 0.768 0.000 0.008 0.000 0.224
#> SRR1643400     1  0.3496      0.486 0.788 0.000 0.012 0.000 0.200
#> SRR1643401     1  0.3530      0.485 0.784 0.000 0.012 0.000 0.204
#> SRR1643402     1  0.3318      0.486 0.800 0.000 0.008 0.000 0.192
#> SRR1643403     1  0.3496      0.486 0.788 0.000 0.012 0.000 0.200
#> SRR1643404     1  0.3318      0.486 0.800 0.000 0.008 0.000 0.192
#> SRR1643405     1  0.0807      0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643406     1  0.0807      0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643407     1  0.0807      0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643408     1  0.0807      0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643409     1  0.0807      0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643410     1  0.0807      0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643411     1  0.0807      0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643412     1  0.0807      0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643413     1  0.0807      0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643414     1  0.0807      0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643415     1  0.0807      0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643416     1  0.0807      0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643417     1  0.0807      0.453 0.976 0.000 0.012 0.000 0.012
#> SRR1643418     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643419     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643420     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643421     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643422     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643423     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643424     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643425     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643426     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643427     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643428     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643429     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643430     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643431     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643432     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643433     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643434     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643435     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643436     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643437     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643438     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643439     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643440     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643441     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643442     4  0.0404      0.920 0.000 0.000 0.000 0.988 0.012
#> SRR1643443     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643444     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643445     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643446     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643447     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643448     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643449     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643450     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643451     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643452     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643453     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643454     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643455     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643456     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643457     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643458     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643459     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643460     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643461     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643462     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643463     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643464     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643466     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643467     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643468     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643469     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643470     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643471     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643472     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643473     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643474     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643475     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643477     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643478     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643479     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643480     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643481     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643482     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643483     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643484     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643485     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643486     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643487     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643488     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643489     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643490     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643491     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643492     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643493     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643494     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643495     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643496     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643497     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643498     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643499     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643500     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643501     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643502     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643503     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643504     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643505     2  0.0290      0.962 0.000 0.992 0.000 0.000 0.008
#> SRR1643506     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643507     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643508     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643509     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643510     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643511     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643512     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643513     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643531     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643532     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643533     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643534     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643535     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643536     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643537     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643538     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643539     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643540     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643541     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643542     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643543     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643544     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643514     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643515     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643516     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643517     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643518     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643519     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643520     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643521     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643522     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643523     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643524     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643525     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643526     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643527     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643528     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643529     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643530     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643545     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643546     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643547     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643548     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643549     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643550     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643551     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643552     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643553     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643554     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643555     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643556     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643558     2  0.0000      0.962 0.000 1.000 0.000 0.000 0.000
#> SRR1643559     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643560     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643561     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643562     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643563     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643564     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643565     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643566     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643567     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643568     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643569     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643570     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643571     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092
#> SRR1643572     2  0.1908      0.955 0.000 0.908 0.000 0.000 0.092

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2    p3    p4    p5 p6
#> SRR1643167     1  0.0881      0.785 0.972 0.000 0.008 0.000 0.012 NA
#> SRR1643168     1  0.0881      0.785 0.972 0.000 0.008 0.000 0.012 NA
#> SRR1643169     1  0.0881      0.785 0.972 0.000 0.008 0.000 0.012 NA
#> SRR1643170     1  0.0881      0.785 0.972 0.000 0.008 0.000 0.012 NA
#> SRR1643171     1  0.0508      0.778 0.984 0.000 0.012 0.000 0.000 NA
#> SRR1643172     1  0.0508      0.778 0.984 0.000 0.012 0.000 0.000 NA
#> SRR1643173     1  0.0508      0.778 0.984 0.000 0.012 0.000 0.000 NA
#> SRR1643174     1  0.0508      0.778 0.984 0.000 0.012 0.000 0.000 NA
#> SRR1643175     1  0.3865      0.706 0.784 0.000 0.000 0.008 0.132 NA
#> SRR1643176     1  0.4044      0.693 0.768 0.000 0.000 0.008 0.140 NA
#> SRR1643177     1  0.4092      0.690 0.768 0.000 0.000 0.012 0.140 NA
#> SRR1643178     1  0.4103      0.687 0.768 0.000 0.000 0.012 0.136 NA
#> SRR1643180     1  0.0820      0.771 0.972 0.000 0.016 0.000 0.000 NA
#> SRR1643181     1  0.0914      0.768 0.968 0.000 0.016 0.000 0.000 NA
#> SRR1643182     1  0.0820      0.771 0.972 0.000 0.016 0.000 0.000 NA
#> SRR1643183     1  0.0914      0.768 0.968 0.000 0.016 0.000 0.000 NA
#> SRR1643184     1  0.0914      0.768 0.968 0.000 0.016 0.000 0.000 NA
#> SRR1643185     1  0.0820      0.771 0.972 0.000 0.016 0.000 0.000 NA
#> SRR1643186     1  0.0914      0.771 0.968 0.000 0.016 0.000 0.000 NA
#> SRR1643187     1  0.1967      0.791 0.904 0.000 0.000 0.000 0.084 NA
#> SRR1643188     1  0.1967      0.791 0.904 0.000 0.000 0.000 0.084 NA
#> SRR1643189     1  0.1967      0.791 0.904 0.000 0.000 0.000 0.084 NA
#> SRR1643190     1  0.1967      0.791 0.904 0.000 0.000 0.000 0.084 NA
#> SRR1643191     1  0.0748      0.779 0.976 0.000 0.016 0.000 0.004 NA
#> SRR1643192     1  0.0951      0.782 0.968 0.000 0.020 0.000 0.008 NA
#> SRR1643193     1  0.0951      0.788 0.968 0.000 0.004 0.000 0.020 NA
#> SRR1643194     1  0.0806      0.788 0.972 0.000 0.000 0.000 0.020 NA
#> SRR1643195     1  0.3512      0.530 0.772 0.000 0.000 0.196 0.000 NA
#> SRR1643196     1  0.3512      0.530 0.772 0.000 0.000 0.196 0.000 NA
#> SRR1643197     1  0.1888      0.793 0.916 0.000 0.004 0.000 0.068 NA
#> SRR1643198     1  0.1888      0.793 0.916 0.000 0.004 0.000 0.068 NA
#> SRR1643199     1  0.0881      0.781 0.972 0.000 0.012 0.000 0.008 NA
#> SRR1643200     1  0.0984      0.779 0.968 0.000 0.012 0.000 0.008 NA
#> SRR1643201     1  0.0717      0.780 0.976 0.000 0.000 0.008 0.000 NA
#> SRR1643202     1  0.0806      0.779 0.972 0.000 0.000 0.008 0.000 NA
#> SRR1643203     1  0.1643      0.793 0.924 0.000 0.000 0.000 0.068 NA
#> SRR1643204     1  0.1701      0.793 0.920 0.000 0.000 0.000 0.072 NA
#> SRR1643205     3  0.0458      0.990 0.000 0.000 0.984 0.000 0.000 NA
#> SRR1643206     3  0.0458      0.990 0.000 0.000 0.984 0.000 0.000 NA
#> SRR1643207     3  0.0458      0.990 0.000 0.000 0.984 0.000 0.000 NA
#> SRR1643208     3  0.0458      0.990 0.000 0.000 0.984 0.000 0.000 NA
#> SRR1643209     3  0.0146      0.992 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643210     3  0.0146      0.992 0.000 0.000 0.996 0.000 0.004 NA
#> SRR1643211     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643212     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643213     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643214     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643215     3  0.0508      0.988 0.000 0.000 0.984 0.000 0.012 NA
#> SRR1643216     3  0.0508      0.988 0.000 0.000 0.984 0.000 0.012 NA
#> SRR1643217     3  0.0508      0.988 0.000 0.000 0.984 0.000 0.012 NA
#> SRR1643218     3  0.0508      0.988 0.000 0.000 0.984 0.000 0.012 NA
#> SRR1643219     3  0.0508      0.988 0.000 0.000 0.984 0.000 0.012 NA
#> SRR1643220     3  0.0508      0.988 0.000 0.000 0.984 0.000 0.012 NA
#> SRR1643221     3  0.0146      0.992 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643222     3  0.0146      0.992 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643223     3  0.0363      0.991 0.000 0.000 0.988 0.000 0.000 NA
#> SRR1643224     3  0.0363      0.991 0.000 0.000 0.988 0.000 0.000 NA
#> SRR1643225     3  0.0363      0.991 0.000 0.000 0.988 0.000 0.000 NA
#> SRR1643226     3  0.0363      0.991 0.000 0.000 0.988 0.000 0.000 NA
#> SRR1643227     3  0.0692      0.987 0.004 0.000 0.976 0.000 0.000 NA
#> SRR1643228     3  0.0692      0.987 0.004 0.000 0.976 0.000 0.000 NA
#> SRR1643229     3  0.0603      0.989 0.004 0.000 0.980 0.000 0.000 NA
#> SRR1643230     3  0.0458      0.990 0.000 0.000 0.984 0.000 0.000 NA
#> SRR1643231     3  0.0458      0.990 0.000 0.000 0.984 0.000 0.000 NA
#> SRR1643232     3  0.0260      0.992 0.000 0.000 0.992 0.000 0.000 NA
#> SRR1643233     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643234     3  0.0000      0.992 0.000 0.000 1.000 0.000 0.000 NA
#> SRR1643235     3  0.0146      0.992 0.000 0.000 0.996 0.000 0.000 NA
#> SRR1643236     3  0.0260      0.992 0.000 0.000 0.992 0.000 0.000 NA
#> SRR1643237     3  0.0260      0.992 0.000 0.000 0.992 0.000 0.000 NA
#> SRR1643238     3  0.0260      0.991 0.000 0.000 0.992 0.000 0.008 NA
#> SRR1643239     3  0.0260      0.991 0.000 0.000 0.992 0.000 0.008 NA
#> SRR1643240     3  0.0260      0.991 0.000 0.000 0.992 0.000 0.008 NA
#> SRR1643241     3  0.0260      0.991 0.000 0.000 0.992 0.000 0.008 NA
#> SRR1643242     3  0.0363      0.991 0.000 0.000 0.988 0.000 0.000 NA
#> SRR1643243     3  0.0405      0.990 0.000 0.000 0.988 0.000 0.008 NA
#> SRR1643245     3  0.0291      0.991 0.000 0.000 0.992 0.000 0.004 NA
#> SRR1643246     3  0.0291      0.991 0.000 0.000 0.992 0.000 0.004 NA
#> SRR1643247     3  0.0291      0.991 0.000 0.000 0.992 0.000 0.004 NA
#> SRR1643248     3  0.0806      0.985 0.008 0.000 0.972 0.000 0.000 NA
#> SRR1643249     3  0.1572      0.954 0.036 0.000 0.936 0.000 0.000 NA
#> SRR1643250     4  0.0725      0.889 0.012 0.000 0.000 0.976 0.000 NA
#> SRR1643251     4  0.0891      0.887 0.024 0.000 0.000 0.968 0.000 NA
#> SRR1643252     4  0.0622      0.889 0.012 0.000 0.000 0.980 0.000 NA
#> SRR1643253     4  0.0820      0.888 0.016 0.000 0.000 0.972 0.000 NA
#> SRR1643254     4  0.0972      0.886 0.028 0.000 0.000 0.964 0.000 NA
#> SRR1643255     4  0.0717      0.889 0.008 0.000 0.000 0.976 0.000 NA
#> SRR1643256     4  0.1003      0.887 0.020 0.000 0.000 0.964 0.000 NA
#> SRR1643257     4  0.0717      0.889 0.016 0.000 0.000 0.976 0.000 NA
#> SRR1643258     4  0.0909      0.888 0.020 0.000 0.000 0.968 0.000 NA
#> SRR1643259     4  0.1088      0.886 0.024 0.000 0.000 0.960 0.000 NA
#> SRR1643260     4  0.1168      0.885 0.028 0.000 0.000 0.956 0.000 NA
#> SRR1643261     4  0.0820      0.889 0.012 0.000 0.000 0.972 0.000 NA
#> SRR1643262     4  0.1003      0.891 0.000 0.000 0.000 0.964 0.020 NA
#> SRR1643263     4  0.0909      0.891 0.000 0.000 0.000 0.968 0.020 NA
#> SRR1643264     4  0.0909      0.891 0.000 0.000 0.000 0.968 0.020 NA
#> SRR1643266     4  0.1003      0.891 0.000 0.000 0.000 0.964 0.016 NA
#> SRR1643267     4  0.0909      0.891 0.000 0.000 0.000 0.968 0.020 NA
#> SRR1643268     4  0.1003      0.891 0.000 0.000 0.000 0.964 0.020 NA
#> SRR1643269     4  0.0820      0.891 0.000 0.000 0.000 0.972 0.016 NA
#> SRR1643270     4  0.0820      0.891 0.000 0.000 0.000 0.972 0.016 NA
#> SRR1643271     4  0.0909      0.891 0.000 0.000 0.000 0.968 0.020 NA
#> SRR1643272     4  0.1003      0.891 0.000 0.000 0.000 0.964 0.020 NA
#> SRR1643273     5  0.3079      0.779 0.128 0.000 0.000 0.028 0.836 NA
#> SRR1643274     5  0.3135      0.777 0.124 0.000 0.000 0.028 0.836 NA
#> SRR1643275     5  0.3036      0.778 0.124 0.000 0.000 0.028 0.840 NA
#> SRR1643276     5  0.3258      0.774 0.120 0.000 0.000 0.032 0.832 NA
#> SRR1643277     5  0.2973      0.780 0.136 0.000 0.000 0.024 0.836 NA
#> SRR1643278     5  0.3036      0.779 0.124 0.000 0.000 0.028 0.840 NA
#> SRR1643279     5  0.3214      0.774 0.116 0.000 0.000 0.032 0.836 NA
#> SRR1643280     5  0.3135      0.778 0.124 0.000 0.000 0.028 0.836 NA
#> SRR1643281     5  0.3092      0.778 0.120 0.000 0.000 0.028 0.840 NA
#> SRR1643282     5  0.3344      0.773 0.120 0.000 0.000 0.032 0.828 NA
#> SRR1643283     5  0.3182      0.780 0.136 0.000 0.000 0.024 0.828 NA
#> SRR1643284     5  0.3227      0.776 0.124 0.000 0.000 0.028 0.832 NA
#> SRR1643285     5  0.3068      0.777 0.120 0.000 0.000 0.032 0.840 NA
#> SRR1643286     5  0.3013      0.779 0.140 0.000 0.000 0.024 0.832 NA
#> SRR1643287     4  0.4756      0.415 0.000 0.000 0.000 0.540 0.408 NA
#> SRR1643288     4  0.4728      0.452 0.000 0.000 0.000 0.556 0.392 NA
#> SRR1643289     4  0.4703      0.472 0.000 0.000 0.000 0.568 0.380 NA
#> SRR1643290     4  0.4743      0.432 0.000 0.000 0.000 0.548 0.400 NA
#> SRR1643291     4  0.4720      0.457 0.000 0.000 0.000 0.560 0.388 NA
#> SRR1643292     4  0.4684      0.488 0.000 0.000 0.000 0.576 0.372 NA
#> SRR1643293     4  0.4736      0.440 0.000 0.000 0.000 0.552 0.396 NA
#> SRR1643294     4  0.4697      0.429 0.000 0.000 0.000 0.548 0.404 NA
#> SRR1643295     4  0.4739      0.357 0.000 0.000 0.000 0.516 0.436 NA
#> SRR1643296     4  0.4756      0.415 0.000 0.000 0.000 0.540 0.408 NA
#> SRR1643297     4  0.4728      0.450 0.000 0.000 0.000 0.556 0.392 NA
#> SRR1643298     4  0.4763      0.405 0.000 0.000 0.000 0.536 0.412 NA
#> SRR1643299     4  0.4768      0.395 0.000 0.000 0.000 0.532 0.416 NA
#> SRR1643300     4  0.4703      0.472 0.000 0.000 0.000 0.568 0.380 NA
#> SRR1643301     4  0.2765      0.835 0.064 0.000 0.000 0.872 0.056 NA
#> SRR1643302     4  0.3558      0.783 0.108 0.000 0.000 0.812 0.072 NA
#> SRR1643303     4  0.3675      0.776 0.096 0.000 0.000 0.804 0.092 NA
#> SRR1643304     4  0.3620      0.782 0.120 0.000 0.000 0.808 0.060 NA
#> SRR1643305     4  0.3851      0.736 0.160 0.000 0.000 0.776 0.056 NA
#> SRR1643306     4  0.3344      0.798 0.104 0.000 0.000 0.828 0.060 NA
#> SRR1643307     4  0.2884      0.828 0.064 0.000 0.000 0.864 0.064 NA
#> SRR1643308     4  0.3909      0.726 0.160 0.000 0.000 0.772 0.060 NA
#> SRR1643309     4  0.3038      0.823 0.060 0.000 0.000 0.856 0.072 NA
#> SRR1643310     4  0.3151      0.822 0.076 0.000 0.000 0.848 0.064 NA
#> SRR1643311     4  0.2614      0.845 0.060 0.000 0.000 0.884 0.044 NA
#> SRR1643312     4  0.5091      0.546 0.224 0.000 0.000 0.652 0.112 NA
#> SRR1643313     4  0.2933      0.828 0.076 0.000 0.000 0.860 0.056 NA
#> SRR1643314     1  0.3702      0.732 0.760 0.000 0.008 0.000 0.208 NA
#> SRR1643315     1  0.3777      0.730 0.756 0.000 0.008 0.000 0.208 NA
#> SRR1643316     1  0.3296      0.756 0.796 0.000 0.004 0.000 0.180 NA
#> SRR1643317     1  0.3688      0.741 0.768 0.000 0.008 0.000 0.196 NA
#> SRR1643318     1  0.3652      0.730 0.760 0.000 0.008 0.000 0.212 NA
#> SRR1643319     1  0.3229      0.761 0.804 0.000 0.004 0.000 0.172 NA
#> SRR1643320     1  0.3361      0.751 0.788 0.000 0.004 0.000 0.188 NA
#> SRR1643321     1  0.3623      0.733 0.764 0.000 0.008 0.000 0.208 NA
#> SRR1643322     1  0.3502      0.747 0.780 0.000 0.008 0.000 0.192 NA
#> SRR1643323     1  0.3550      0.750 0.780 0.000 0.008 0.000 0.188 NA
#> SRR1643324     1  0.3393      0.749 0.784 0.000 0.004 0.000 0.192 NA
#> SRR1643325     1  0.3438      0.753 0.788 0.000 0.008 0.000 0.184 NA
#> SRR1643326     1  0.3777      0.730 0.756 0.000 0.008 0.000 0.208 NA
#> SRR1643327     1  0.3361      0.752 0.788 0.000 0.004 0.000 0.188 NA
#> SRR1643328     1  0.4063      0.635 0.692 0.000 0.008 0.000 0.280 NA
#> SRR1643329     1  0.3989      0.679 0.716 0.000 0.008 0.000 0.252 NA
#> SRR1643330     1  0.4056      0.661 0.704 0.000 0.008 0.000 0.264 NA
#> SRR1643331     1  0.4099      0.647 0.696 0.000 0.008 0.000 0.272 NA
#> SRR1643332     1  0.4043      0.642 0.696 0.000 0.008 0.000 0.276 NA
#> SRR1643333     1  0.4001      0.657 0.704 0.000 0.008 0.000 0.268 NA
#> SRR1643334     1  0.3897      0.667 0.712 0.000 0.008 0.000 0.264 NA
#> SRR1643335     1  0.4022      0.650 0.700 0.000 0.008 0.000 0.272 NA
#> SRR1643336     1  0.4043      0.642 0.696 0.000 0.008 0.000 0.276 NA
#> SRR1643337     1  0.4043      0.643 0.696 0.000 0.008 0.000 0.276 NA
#> SRR1643338     1  0.4001      0.657 0.704 0.000 0.008 0.000 0.268 NA
#> SRR1643339     1  0.4063      0.634 0.692 0.000 0.008 0.000 0.280 NA
#> SRR1643340     1  0.4001      0.657 0.704 0.000 0.008 0.000 0.268 NA
#> SRR1643341     1  0.4056      0.661 0.704 0.000 0.008 0.000 0.264 NA
#> SRR1643342     1  0.4001      0.657 0.704 0.000 0.008 0.000 0.268 NA
#> SRR1643343     5  0.3764      0.753 0.108 0.000 0.000 0.008 0.796 NA
#> SRR1643344     5  0.3742      0.754 0.116 0.000 0.000 0.004 0.792 NA
#> SRR1643345     5  0.3560      0.755 0.104 0.000 0.000 0.004 0.808 NA
#> SRR1643346     5  0.3649      0.756 0.112 0.000 0.000 0.004 0.800 NA
#> SRR1643347     5  0.3693      0.756 0.116 0.000 0.000 0.004 0.796 NA
#> SRR1643348     5  0.3808      0.752 0.112 0.000 0.000 0.008 0.792 NA
#> SRR1643349     5  0.3669      0.754 0.104 0.000 0.000 0.008 0.804 NA
#> SRR1643350     5  0.3742      0.753 0.116 0.000 0.000 0.004 0.792 NA
#> SRR1643351     5  0.3598      0.759 0.112 0.000 0.000 0.004 0.804 NA
#> SRR1643352     5  0.3699      0.755 0.112 0.000 0.000 0.004 0.796 NA
#> SRR1643353     5  0.3791      0.751 0.116 0.000 0.000 0.004 0.788 NA
#> SRR1643354     5  0.3508      0.756 0.104 0.000 0.000 0.004 0.812 NA
#> SRR1643355     5  0.3785      0.751 0.120 0.000 0.000 0.004 0.788 NA
#> SRR1643356     5  0.3808      0.752 0.112 0.000 0.000 0.008 0.792 NA
#> SRR1643357     5  0.3610      0.753 0.104 0.000 0.000 0.004 0.804 NA
#> SRR1643358     4  0.1524      0.884 0.000 0.000 0.000 0.932 0.008 NA
#> SRR1643359     4  0.1524      0.884 0.000 0.000 0.000 0.932 0.008 NA
#> SRR1643360     4  0.1524      0.884 0.000 0.000 0.000 0.932 0.008 NA
#> SRR1643361     4  0.1686      0.883 0.000 0.000 0.000 0.924 0.012 NA
#> SRR1643362     4  0.1686      0.883 0.000 0.000 0.000 0.924 0.012 NA
#> SRR1643363     4  0.1524      0.884 0.000 0.000 0.000 0.932 0.008 NA
#> SRR1643364     4  0.1895      0.882 0.000 0.000 0.000 0.912 0.016 NA
#> SRR1643365     4  0.1745      0.882 0.000 0.000 0.000 0.920 0.012 NA
#> SRR1643366     4  0.1524      0.884 0.000 0.000 0.000 0.932 0.008 NA
#> SRR1643367     4  0.1524      0.884 0.000 0.000 0.000 0.932 0.008 NA
#> SRR1643368     4  0.1719      0.884 0.000 0.000 0.000 0.924 0.016 NA
#> SRR1643369     4  0.1524      0.884 0.000 0.000 0.000 0.932 0.008 NA
#> SRR1643370     4  0.1524      0.884 0.000 0.000 0.000 0.932 0.008 NA
#> SRR1643371     4  0.1625      0.884 0.000 0.000 0.000 0.928 0.012 NA
#> SRR1643372     4  0.1524      0.884 0.000 0.000 0.000 0.932 0.008 NA
#> SRR1643373     4  0.2122      0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643374     4  0.2066      0.879 0.000 0.000 0.000 0.904 0.024 NA
#> SRR1643375     4  0.2122      0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643376     4  0.2066      0.879 0.000 0.000 0.000 0.904 0.024 NA
#> SRR1643377     4  0.2122      0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643378     4  0.2201      0.877 0.000 0.000 0.000 0.896 0.028 NA
#> SRR1643379     4  0.2066      0.879 0.000 0.000 0.000 0.904 0.024 NA
#> SRR1643380     4  0.2122      0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643381     4  0.2122      0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643382     4  0.2122      0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643383     4  0.2122      0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643384     4  0.2122      0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643385     4  0.2066      0.879 0.000 0.000 0.000 0.904 0.024 NA
#> SRR1643386     4  0.1895      0.880 0.000 0.000 0.000 0.912 0.016 NA
#> SRR1643387     4  0.2122      0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643388     4  0.2122      0.878 0.000 0.000 0.000 0.900 0.024 NA
#> SRR1643389     4  0.2066      0.879 0.000 0.000 0.000 0.904 0.024 NA
#> SRR1643390     5  0.4192      0.470 0.412 0.000 0.000 0.000 0.572 NA
#> SRR1643391     5  0.4264      0.237 0.484 0.000 0.000 0.000 0.500 NA
#> SRR1643392     5  0.4199      0.462 0.416 0.000 0.000 0.000 0.568 NA
#> SRR1643393     5  0.4238      0.389 0.444 0.000 0.000 0.000 0.540 NA
#> SRR1643394     5  0.4234      0.399 0.440 0.000 0.000 0.000 0.544 NA
#> SRR1643395     5  0.4212      0.442 0.424 0.000 0.000 0.000 0.560 NA
#> SRR1643396     5  0.4238      0.388 0.444 0.000 0.000 0.000 0.540 NA
#> SRR1643397     5  0.4256      0.321 0.464 0.000 0.000 0.000 0.520 NA
#> SRR1643398     5  0.4256      0.322 0.464 0.000 0.000 0.000 0.520 NA
#> SRR1643399     5  0.4337      0.243 0.480 0.000 0.000 0.000 0.500 NA
#> SRR1643400     5  0.4253      0.335 0.460 0.000 0.000 0.000 0.524 NA
#> SRR1643401     5  0.4224      0.423 0.432 0.000 0.000 0.000 0.552 NA
#> SRR1643402     5  0.4242      0.373 0.448 0.000 0.000 0.000 0.536 NA
#> SRR1643403     5  0.4322      0.349 0.452 0.000 0.000 0.000 0.528 NA
#> SRR1643404     5  0.4218      0.434 0.428 0.000 0.000 0.000 0.556 NA
#> SRR1643405     5  0.3398      0.756 0.216 0.000 0.004 0.000 0.768 NA
#> SRR1643406     5  0.3398      0.756 0.216 0.000 0.004 0.000 0.768 NA
#> SRR1643407     5  0.3370      0.758 0.212 0.000 0.004 0.000 0.772 NA
#> SRR1643408     5  0.3370      0.758 0.212 0.000 0.004 0.000 0.772 NA
#> SRR1643409     5  0.3370      0.758 0.212 0.000 0.004 0.000 0.772 NA
#> SRR1643410     5  0.3341      0.760 0.208 0.000 0.004 0.000 0.776 NA
#> SRR1643411     5  0.3370      0.758 0.212 0.000 0.004 0.000 0.772 NA
#> SRR1643412     5  0.3341      0.759 0.208 0.000 0.004 0.000 0.776 NA
#> SRR1643413     5  0.3398      0.756 0.216 0.000 0.004 0.000 0.768 NA
#> SRR1643414     5  0.3398      0.756 0.216 0.000 0.004 0.000 0.768 NA
#> SRR1643415     5  0.3341      0.759 0.208 0.000 0.004 0.000 0.776 NA
#> SRR1643416     5  0.3426      0.751 0.220 0.000 0.004 0.000 0.764 NA
#> SRR1643417     5  0.3370      0.758 0.212 0.000 0.004 0.000 0.772 NA
#> SRR1643418     4  0.0713      0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643419     4  0.0713      0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643420     4  0.0713      0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643421     4  0.0713      0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643422     4  0.0713      0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643423     4  0.0713      0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643424     4  0.0713      0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643425     4  0.0713      0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643426     4  0.0713      0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643427     4  0.0713      0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643428     4  0.0713      0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643429     4  0.0713      0.889 0.000 0.000 0.000 0.972 0.000 NA
#> SRR1643430     4  0.0547      0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643431     4  0.0547      0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643432     4  0.0547      0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643433     4  0.0632      0.889 0.000 0.000 0.000 0.976 0.000 NA
#> SRR1643434     4  0.0547      0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643435     4  0.0547      0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643436     4  0.0547      0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643437     4  0.0547      0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643438     4  0.0547      0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643439     4  0.0547      0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643440     4  0.0547      0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643441     4  0.0547      0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643442     4  0.0547      0.889 0.000 0.000 0.000 0.980 0.000 NA
#> SRR1643443     2  0.2664      0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643444     2  0.2664      0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643445     2  0.2664      0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643446     2  0.2664      0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643447     2  0.2664      0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643448     2  0.2664      0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643449     2  0.2664      0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643450     2  0.2664      0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643451     2  0.2664      0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643452     2  0.2664      0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643453     2  0.2664      0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643454     2  0.2664      0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643455     2  0.2664      0.901 0.000 0.816 0.000 0.000 0.000 NA
#> SRR1643456     2  0.0000      0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643457     2  0.0000      0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643458     2  0.0000      0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643459     2  0.0000      0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643460     2  0.0000      0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643461     2  0.0000      0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643462     2  0.0000      0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643463     2  0.0000      0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643464     2  0.0000      0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643466     2  0.0000      0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643467     2  0.0000      0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643468     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643469     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643470     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643471     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643472     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643473     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643474     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643475     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643477     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643478     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643479     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643480     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643481     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643482     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643483     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643484     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643485     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643486     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643487     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643488     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643489     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643490     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643491     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643492     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643493     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643494     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643495     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643496     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643497     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643498     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643499     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643500     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643501     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643502     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643503     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643504     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643505     2  0.0260      0.917 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643506     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643507     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643508     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643509     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643510     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643511     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643512     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643513     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643531     2  0.2762      0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643532     2  0.2762      0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643533     2  0.2762      0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643534     2  0.2762      0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643535     2  0.2762      0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643536     2  0.2762      0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643537     2  0.2762      0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643538     2  0.2762      0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643539     2  0.2762      0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643540     2  0.2762      0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643541     2  0.2762      0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643542     2  0.2762      0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643543     2  0.2762      0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643544     2  0.2762      0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643514     2  0.2793      0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643515     2  0.2793      0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643516     2  0.2793      0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643517     2  0.2793      0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643518     2  0.2793      0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643519     2  0.2793      0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643520     2  0.2793      0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643521     2  0.2793      0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643522     2  0.2793      0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643523     2  0.2793      0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643524     2  0.2793      0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643525     2  0.2793      0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643526     2  0.2793      0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643527     2  0.2793      0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643528     2  0.2793      0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643529     2  0.2793      0.896 0.000 0.800 0.000 0.000 0.000 NA
#> SRR1643530     2  0.2762      0.898 0.000 0.804 0.000 0.000 0.000 NA
#> SRR1643545     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643546     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643547     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643548     2  0.0000      0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643549     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643550     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643551     2  0.0000      0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643552     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643553     2  0.0146      0.917 0.000 0.996 0.000 0.000 0.000 NA
#> SRR1643554     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643555     2  0.0000      0.917 0.000 1.000 0.000 0.000 0.000 NA
#> SRR1643556     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643558     2  0.0260      0.916 0.000 0.992 0.000 0.000 0.000 NA
#> SRR1643559     2  0.2697      0.900 0.000 0.812 0.000 0.000 0.000 NA
#> SRR1643560     2  0.2697      0.900 0.000 0.812 0.000 0.000 0.000 NA
#> SRR1643561     2  0.2730      0.899 0.000 0.808 0.000 0.000 0.000 NA
#> SRR1643562     2  0.2697      0.900 0.000 0.812 0.000 0.000 0.000 NA
#> SRR1643563     2  0.2730      0.899 0.000 0.808 0.000 0.000 0.000 NA
#> SRR1643564     2  0.2730      0.899 0.000 0.808 0.000 0.000 0.000 NA
#> SRR1643565     2  0.2730      0.899 0.000 0.808 0.000 0.000 0.000 NA
#> SRR1643566     2  0.2697      0.900 0.000 0.812 0.000 0.000 0.000 NA
#> SRR1643567     2  0.2730      0.899 0.000 0.808 0.000 0.000 0.000 NA
#> SRR1643568     2  0.2730      0.899 0.000 0.808 0.000 0.000 0.000 NA
#> SRR1643569     2  0.2730      0.899 0.000 0.808 0.000 0.000 0.000 NA
#> SRR1643570     2  0.2697      0.900 0.000 0.812 0.000 0.000 0.000 NA
#> SRR1643571     2  0.2697      0.900 0.000 0.812 0.000 0.000 0.000 NA
#> SRR1643572     2  0.2730      0.899 0.000 0.808 0.000 0.000 0.000 NA

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-MAD-NMF-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-MAD-NMF-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-MAD-NMF-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-MAD-NMF-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-MAD-NMF-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-MAD-NMF-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-MAD-NMF-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-MAD-NMF-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-MAD-NMF-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-MAD-NMF-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-MAD-NMF-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-MAD-NMF-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-MAD-NMF-get-signatures-3

get_signatures(res, k = 5)

plot of chunk tab-MAD-NMF-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-MAD-NMF-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-MAD-NMF-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-MAD-NMF-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-MAD-NMF-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)

plot of chunk tab-MAD-NMF-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-MAD-NMF-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk MAD-NMF-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-MAD-NMF-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-MAD-NMF-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-MAD-NMF-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-MAD-NMF-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-MAD-NMF-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk MAD-NMF-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


ATC:hclust**

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["ATC", "hclust"]
# you can also extract it by
# res = res_list["ATC:hclust"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'ATC' method.
#>   Subgroups are detected by 'hclust' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 2.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk ATC-hclust-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk ATC-hclust-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000        0.43504 0.566   0.566
#> 3 3 0.874           0.820       0.948        0.14149 0.990   0.982
#> 4 4 0.882           0.998       0.973        0.07360 0.882   0.788
#> 5 5 1.000           0.998       1.000        0.05844 0.998   0.996
#> 6 6 1.000           0.996       0.999        0.00888 0.995   0.989

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 2

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1 p2    p3
#> SRR1643167     1    0.00    0.86375 1.000  0 0.000
#> SRR1643168     1    0.00    0.86375 1.000  0 0.000
#> SRR1643169     1    0.00    0.86375 1.000  0 0.000
#> SRR1643170     1    0.00    0.86375 1.000  0 0.000
#> SRR1643171     1    0.00    0.86375 1.000  0 0.000
#> SRR1643172     1    0.00    0.86375 1.000  0 0.000
#> SRR1643173     1    0.00    0.86375 1.000  0 0.000
#> SRR1643174     1    0.00    0.86375 1.000  0 0.000
#> SRR1643175     1    0.00    0.86375 1.000  0 0.000
#> SRR1643176     1    0.00    0.86375 1.000  0 0.000
#> SRR1643177     1    0.00    0.86375 1.000  0 0.000
#> SRR1643178     1    0.00    0.86375 1.000  0 0.000
#> SRR1643180     1    0.00    0.86375 1.000  0 0.000
#> SRR1643181     1    0.00    0.86375 1.000  0 0.000
#> SRR1643182     1    0.00    0.86375 1.000  0 0.000
#> SRR1643183     1    0.00    0.86375 1.000  0 0.000
#> SRR1643184     1    0.00    0.86375 1.000  0 0.000
#> SRR1643185     1    0.00    0.86375 1.000  0 0.000
#> SRR1643186     1    0.00    0.86375 1.000  0 0.000
#> SRR1643187     1    0.00    0.86375 1.000  0 0.000
#> SRR1643188     1    0.00    0.86375 1.000  0 0.000
#> SRR1643189     1    0.00    0.86375 1.000  0 0.000
#> SRR1643190     1    0.00    0.86375 1.000  0 0.000
#> SRR1643191     1    0.00    0.86375 1.000  0 0.000
#> SRR1643192     1    0.00    0.86375 1.000  0 0.000
#> SRR1643193     1    0.00    0.86375 1.000  0 0.000
#> SRR1643194     1    0.00    0.86375 1.000  0 0.000
#> SRR1643195     1    0.00    0.86375 1.000  0 0.000
#> SRR1643196     1    0.00    0.86375 1.000  0 0.000
#> SRR1643197     1    0.00    0.86375 1.000  0 0.000
#> SRR1643198     1    0.00    0.86375 1.000  0 0.000
#> SRR1643199     1    0.00    0.86375 1.000  0 0.000
#> SRR1643200     1    0.00    0.86375 1.000  0 0.000
#> SRR1643201     1    0.00    0.86375 1.000  0 0.000
#> SRR1643202     1    0.00    0.86375 1.000  0 0.000
#> SRR1643203     1    0.00    0.86375 1.000  0 0.000
#> SRR1643204     1    0.00    0.86375 1.000  0 0.000
#> SRR1643205     1    0.63    0.00719 0.528  0 0.472
#> SRR1643206     1    0.63    0.00719 0.528  0 0.472
#> SRR1643207     1    0.63    0.00719 0.528  0 0.472
#> SRR1643208     1    0.63    0.00719 0.528  0 0.472
#> SRR1643209     1    0.63    0.00719 0.528  0 0.472
#> SRR1643210     1    0.63    0.00719 0.528  0 0.472
#> SRR1643211     1    0.63    0.00719 0.528  0 0.472
#> SRR1643212     1    0.63    0.00719 0.528  0 0.472
#> SRR1643213     1    0.63    0.00719 0.528  0 0.472
#> SRR1643214     1    0.63    0.00719 0.528  0 0.472
#> SRR1643215     1    0.63    0.00719 0.528  0 0.472
#> SRR1643216     1    0.63    0.00719 0.528  0 0.472
#> SRR1643217     1    0.63    0.00719 0.528  0 0.472
#> SRR1643218     1    0.63    0.00719 0.528  0 0.472
#> SRR1643219     1    0.63    0.00719 0.528  0 0.472
#> SRR1643220     1    0.63    0.00719 0.528  0 0.472
#> SRR1643221     1    0.63    0.00719 0.528  0 0.472
#> SRR1643222     1    0.63    0.00719 0.528  0 0.472
#> SRR1643223     1    0.63    0.00719 0.528  0 0.472
#> SRR1643224     1    0.63    0.00719 0.528  0 0.472
#> SRR1643225     1    0.63    0.00719 0.528  0 0.472
#> SRR1643226     1    0.63    0.00719 0.528  0 0.472
#> SRR1643227     1    0.63    0.00719 0.528  0 0.472
#> SRR1643228     1    0.63    0.00719 0.528  0 0.472
#> SRR1643229     1    0.63    0.00719 0.528  0 0.472
#> SRR1643230     1    0.63    0.00719 0.528  0 0.472
#> SRR1643231     3    0.63    1.00000 0.472  0 0.528
#> SRR1643232     1    0.63    0.00719 0.528  0 0.472
#> SRR1643233     1    0.63    0.00719 0.528  0 0.472
#> SRR1643234     1    0.63    0.00719 0.528  0 0.472
#> SRR1643235     1    0.63    0.00719 0.528  0 0.472
#> SRR1643236     1    0.63    0.00719 0.528  0 0.472
#> SRR1643237     1    0.63    0.00719 0.528  0 0.472
#> SRR1643238     1    0.63    0.00719 0.528  0 0.472
#> SRR1643239     1    0.63    0.00719 0.528  0 0.472
#> SRR1643240     1    0.63    0.00719 0.528  0 0.472
#> SRR1643241     1    0.63    0.00719 0.528  0 0.472
#> SRR1643242     3    0.63    1.00000 0.472  0 0.528
#> SRR1643243     1    0.63    0.00719 0.528  0 0.472
#> SRR1643245     1    0.63    0.00719 0.528  0 0.472
#> SRR1643246     1    0.63    0.00719 0.528  0 0.472
#> SRR1643247     1    0.63    0.00719 0.528  0 0.472
#> SRR1643248     1    0.63    0.00719 0.528  0 0.472
#> SRR1643249     3    0.63    1.00000 0.472  0 0.528
#> SRR1643250     1    0.00    0.86375 1.000  0 0.000
#> SRR1643251     1    0.00    0.86375 1.000  0 0.000
#> SRR1643252     1    0.00    0.86375 1.000  0 0.000
#> SRR1643253     1    0.00    0.86375 1.000  0 0.000
#> SRR1643254     1    0.00    0.86375 1.000  0 0.000
#> SRR1643255     1    0.00    0.86375 1.000  0 0.000
#> SRR1643256     1    0.00    0.86375 1.000  0 0.000
#> SRR1643257     1    0.00    0.86375 1.000  0 0.000
#> SRR1643258     1    0.00    0.86375 1.000  0 0.000
#> SRR1643259     1    0.00    0.86375 1.000  0 0.000
#> SRR1643260     1    0.00    0.86375 1.000  0 0.000
#> SRR1643261     1    0.00    0.86375 1.000  0 0.000
#> SRR1643262     1    0.00    0.86375 1.000  0 0.000
#> SRR1643263     1    0.00    0.86375 1.000  0 0.000
#> SRR1643264     1    0.00    0.86375 1.000  0 0.000
#> SRR1643266     1    0.00    0.86375 1.000  0 0.000
#> SRR1643267     1    0.00    0.86375 1.000  0 0.000
#> SRR1643268     1    0.00    0.86375 1.000  0 0.000
#> SRR1643269     1    0.00    0.86375 1.000  0 0.000
#> SRR1643270     1    0.00    0.86375 1.000  0 0.000
#> SRR1643271     1    0.00    0.86375 1.000  0 0.000
#> SRR1643272     1    0.00    0.86375 1.000  0 0.000
#> SRR1643273     1    0.00    0.86375 1.000  0 0.000
#> SRR1643274     1    0.00    0.86375 1.000  0 0.000
#> SRR1643275     1    0.00    0.86375 1.000  0 0.000
#> SRR1643276     1    0.00    0.86375 1.000  0 0.000
#> SRR1643277     1    0.00    0.86375 1.000  0 0.000
#> SRR1643278     1    0.00    0.86375 1.000  0 0.000
#> SRR1643279     1    0.00    0.86375 1.000  0 0.000
#> SRR1643280     1    0.00    0.86375 1.000  0 0.000
#> SRR1643281     1    0.00    0.86375 1.000  0 0.000
#> SRR1643282     1    0.00    0.86375 1.000  0 0.000
#> SRR1643283     1    0.00    0.86375 1.000  0 0.000
#> SRR1643284     1    0.00    0.86375 1.000  0 0.000
#> SRR1643285     1    0.00    0.86375 1.000  0 0.000
#> SRR1643286     1    0.00    0.86375 1.000  0 0.000
#> SRR1643287     1    0.00    0.86375 1.000  0 0.000
#> SRR1643288     1    0.00    0.86375 1.000  0 0.000
#> SRR1643289     1    0.00    0.86375 1.000  0 0.000
#> SRR1643290     1    0.00    0.86375 1.000  0 0.000
#> SRR1643291     1    0.00    0.86375 1.000  0 0.000
#> SRR1643292     1    0.00    0.86375 1.000  0 0.000
#> SRR1643293     1    0.00    0.86375 1.000  0 0.000
#> SRR1643294     1    0.00    0.86375 1.000  0 0.000
#> SRR1643295     1    0.00    0.86375 1.000  0 0.000
#> SRR1643296     1    0.00    0.86375 1.000  0 0.000
#> SRR1643297     1    0.00    0.86375 1.000  0 0.000
#> SRR1643298     1    0.00    0.86375 1.000  0 0.000
#> SRR1643299     1    0.00    0.86375 1.000  0 0.000
#> SRR1643300     1    0.00    0.86375 1.000  0 0.000
#> SRR1643301     1    0.00    0.86375 1.000  0 0.000
#> SRR1643302     1    0.00    0.86375 1.000  0 0.000
#> SRR1643303     1    0.00    0.86375 1.000  0 0.000
#> SRR1643304     1    0.00    0.86375 1.000  0 0.000
#> SRR1643305     1    0.00    0.86375 1.000  0 0.000
#> SRR1643306     1    0.00    0.86375 1.000  0 0.000
#> SRR1643307     1    0.00    0.86375 1.000  0 0.000
#> SRR1643308     1    0.00    0.86375 1.000  0 0.000
#> SRR1643309     1    0.00    0.86375 1.000  0 0.000
#> SRR1643310     1    0.00    0.86375 1.000  0 0.000
#> SRR1643311     1    0.00    0.86375 1.000  0 0.000
#> SRR1643312     1    0.00    0.86375 1.000  0 0.000
#> SRR1643313     1    0.00    0.86375 1.000  0 0.000
#> SRR1643314     1    0.00    0.86375 1.000  0 0.000
#> SRR1643315     1    0.00    0.86375 1.000  0 0.000
#> SRR1643316     1    0.00    0.86375 1.000  0 0.000
#> SRR1643317     1    0.00    0.86375 1.000  0 0.000
#> SRR1643318     1    0.00    0.86375 1.000  0 0.000
#> SRR1643319     1    0.00    0.86375 1.000  0 0.000
#> SRR1643320     1    0.00    0.86375 1.000  0 0.000
#> SRR1643321     1    0.00    0.86375 1.000  0 0.000
#> SRR1643322     1    0.00    0.86375 1.000  0 0.000
#> SRR1643323     1    0.00    0.86375 1.000  0 0.000
#> SRR1643324     1    0.00    0.86375 1.000  0 0.000
#> SRR1643325     1    0.00    0.86375 1.000  0 0.000
#> SRR1643326     1    0.00    0.86375 1.000  0 0.000
#> SRR1643327     1    0.00    0.86375 1.000  0 0.000
#> SRR1643328     1    0.00    0.86375 1.000  0 0.000
#> SRR1643329     1    0.00    0.86375 1.000  0 0.000
#> SRR1643330     1    0.00    0.86375 1.000  0 0.000
#> SRR1643331     1    0.00    0.86375 1.000  0 0.000
#> SRR1643332     1    0.00    0.86375 1.000  0 0.000
#> SRR1643333     1    0.00    0.86375 1.000  0 0.000
#> SRR1643334     1    0.00    0.86375 1.000  0 0.000
#> SRR1643335     1    0.00    0.86375 1.000  0 0.000
#> SRR1643336     1    0.00    0.86375 1.000  0 0.000
#> SRR1643337     1    0.00    0.86375 1.000  0 0.000
#> SRR1643338     1    0.00    0.86375 1.000  0 0.000
#> SRR1643339     1    0.00    0.86375 1.000  0 0.000
#> SRR1643340     1    0.00    0.86375 1.000  0 0.000
#> SRR1643341     1    0.00    0.86375 1.000  0 0.000
#> SRR1643342     1    0.00    0.86375 1.000  0 0.000
#> SRR1643343     1    0.00    0.86375 1.000  0 0.000
#> SRR1643344     1    0.00    0.86375 1.000  0 0.000
#> SRR1643345     1    0.00    0.86375 1.000  0 0.000
#> SRR1643346     1    0.00    0.86375 1.000  0 0.000
#> SRR1643347     1    0.00    0.86375 1.000  0 0.000
#> SRR1643348     1    0.00    0.86375 1.000  0 0.000
#> SRR1643349     1    0.00    0.86375 1.000  0 0.000
#> SRR1643350     1    0.00    0.86375 1.000  0 0.000
#> SRR1643351     1    0.00    0.86375 1.000  0 0.000
#> SRR1643352     1    0.00    0.86375 1.000  0 0.000
#> SRR1643353     1    0.00    0.86375 1.000  0 0.000
#> SRR1643354     1    0.00    0.86375 1.000  0 0.000
#> SRR1643355     1    0.00    0.86375 1.000  0 0.000
#> SRR1643356     1    0.00    0.86375 1.000  0 0.000
#> SRR1643357     1    0.00    0.86375 1.000  0 0.000
#> SRR1643358     1    0.00    0.86375 1.000  0 0.000
#> SRR1643359     1    0.00    0.86375 1.000  0 0.000
#> SRR1643360     1    0.00    0.86375 1.000  0 0.000
#> SRR1643361     1    0.00    0.86375 1.000  0 0.000
#> SRR1643362     1    0.00    0.86375 1.000  0 0.000
#> SRR1643363     1    0.00    0.86375 1.000  0 0.000
#> SRR1643364     1    0.00    0.86375 1.000  0 0.000
#> SRR1643365     1    0.00    0.86375 1.000  0 0.000
#> SRR1643366     1    0.00    0.86375 1.000  0 0.000
#> SRR1643367     1    0.00    0.86375 1.000  0 0.000
#> SRR1643368     1    0.00    0.86375 1.000  0 0.000
#> SRR1643369     1    0.00    0.86375 1.000  0 0.000
#> SRR1643370     1    0.00    0.86375 1.000  0 0.000
#> SRR1643371     1    0.00    0.86375 1.000  0 0.000
#> SRR1643372     1    0.00    0.86375 1.000  0 0.000
#> SRR1643373     1    0.00    0.86375 1.000  0 0.000
#> SRR1643374     1    0.00    0.86375 1.000  0 0.000
#> SRR1643375     1    0.00    0.86375 1.000  0 0.000
#> SRR1643376     1    0.00    0.86375 1.000  0 0.000
#> SRR1643377     1    0.00    0.86375 1.000  0 0.000
#> SRR1643378     1    0.00    0.86375 1.000  0 0.000
#> SRR1643379     1    0.00    0.86375 1.000  0 0.000
#> SRR1643380     1    0.00    0.86375 1.000  0 0.000
#> SRR1643381     1    0.00    0.86375 1.000  0 0.000
#> SRR1643382     1    0.00    0.86375 1.000  0 0.000
#> SRR1643383     1    0.00    0.86375 1.000  0 0.000
#> SRR1643384     1    0.00    0.86375 1.000  0 0.000
#> SRR1643385     1    0.00    0.86375 1.000  0 0.000
#> SRR1643386     1    0.00    0.86375 1.000  0 0.000
#> SRR1643387     1    0.00    0.86375 1.000  0 0.000
#> SRR1643388     1    0.00    0.86375 1.000  0 0.000
#> SRR1643389     1    0.00    0.86375 1.000  0 0.000
#> SRR1643390     1    0.00    0.86375 1.000  0 0.000
#> SRR1643391     1    0.00    0.86375 1.000  0 0.000
#> SRR1643392     1    0.00    0.86375 1.000  0 0.000
#> SRR1643393     1    0.00    0.86375 1.000  0 0.000
#> SRR1643394     1    0.00    0.86375 1.000  0 0.000
#> SRR1643395     1    0.00    0.86375 1.000  0 0.000
#> SRR1643396     1    0.00    0.86375 1.000  0 0.000
#> SRR1643397     1    0.00    0.86375 1.000  0 0.000
#> SRR1643398     1    0.00    0.86375 1.000  0 0.000
#> SRR1643399     1    0.00    0.86375 1.000  0 0.000
#> SRR1643400     1    0.00    0.86375 1.000  0 0.000
#> SRR1643401     1    0.00    0.86375 1.000  0 0.000
#> SRR1643402     1    0.00    0.86375 1.000  0 0.000
#> SRR1643403     1    0.00    0.86375 1.000  0 0.000
#> SRR1643404     1    0.00    0.86375 1.000  0 0.000
#> SRR1643405     1    0.00    0.86375 1.000  0 0.000
#> SRR1643406     1    0.00    0.86375 1.000  0 0.000
#> SRR1643407     1    0.00    0.86375 1.000  0 0.000
#> SRR1643408     1    0.00    0.86375 1.000  0 0.000
#> SRR1643409     1    0.00    0.86375 1.000  0 0.000
#> SRR1643410     1    0.00    0.86375 1.000  0 0.000
#> SRR1643411     1    0.00    0.86375 1.000  0 0.000
#> SRR1643412     1    0.00    0.86375 1.000  0 0.000
#> SRR1643413     1    0.00    0.86375 1.000  0 0.000
#> SRR1643414     1    0.00    0.86375 1.000  0 0.000
#> SRR1643415     1    0.00    0.86375 1.000  0 0.000
#> SRR1643416     1    0.00    0.86375 1.000  0 0.000
#> SRR1643417     1    0.00    0.86375 1.000  0 0.000
#> SRR1643418     1    0.00    0.86375 1.000  0 0.000
#> SRR1643419     1    0.00    0.86375 1.000  0 0.000
#> SRR1643420     1    0.00    0.86375 1.000  0 0.000
#> SRR1643421     1    0.00    0.86375 1.000  0 0.000
#> SRR1643422     1    0.00    0.86375 1.000  0 0.000
#> SRR1643423     1    0.00    0.86375 1.000  0 0.000
#> SRR1643424     1    0.00    0.86375 1.000  0 0.000
#> SRR1643425     1    0.00    0.86375 1.000  0 0.000
#> SRR1643426     1    0.00    0.86375 1.000  0 0.000
#> SRR1643427     1    0.00    0.86375 1.000  0 0.000
#> SRR1643428     1    0.00    0.86375 1.000  0 0.000
#> SRR1643429     1    0.00    0.86375 1.000  0 0.000
#> SRR1643430     1    0.00    0.86375 1.000  0 0.000
#> SRR1643431     1    0.00    0.86375 1.000  0 0.000
#> SRR1643432     1    0.00    0.86375 1.000  0 0.000
#> SRR1643433     1    0.00    0.86375 1.000  0 0.000
#> SRR1643434     1    0.00    0.86375 1.000  0 0.000
#> SRR1643435     1    0.00    0.86375 1.000  0 0.000
#> SRR1643436     1    0.00    0.86375 1.000  0 0.000
#> SRR1643437     1    0.00    0.86375 1.000  0 0.000
#> SRR1643438     1    0.00    0.86375 1.000  0 0.000
#> SRR1643439     1    0.00    0.86375 1.000  0 0.000
#> SRR1643440     1    0.00    0.86375 1.000  0 0.000
#> SRR1643441     1    0.00    0.86375 1.000  0 0.000
#> SRR1643442     1    0.00    0.86375 1.000  0 0.000
#> SRR1643443     2    0.00    1.00000 0.000  1 0.000
#> SRR1643444     2    0.00    1.00000 0.000  1 0.000
#> SRR1643445     2    0.00    1.00000 0.000  1 0.000
#> SRR1643446     2    0.00    1.00000 0.000  1 0.000
#> SRR1643447     2    0.00    1.00000 0.000  1 0.000
#> SRR1643448     2    0.00    1.00000 0.000  1 0.000
#> SRR1643449     2    0.00    1.00000 0.000  1 0.000
#> SRR1643450     2    0.00    1.00000 0.000  1 0.000
#> SRR1643451     2    0.00    1.00000 0.000  1 0.000
#> SRR1643452     2    0.00    1.00000 0.000  1 0.000
#> SRR1643453     2    0.00    1.00000 0.000  1 0.000
#> SRR1643454     2    0.00    1.00000 0.000  1 0.000
#> SRR1643455     2    0.00    1.00000 0.000  1 0.000
#> SRR1643456     2    0.00    1.00000 0.000  1 0.000
#> SRR1643457     2    0.00    1.00000 0.000  1 0.000
#> SRR1643458     2    0.00    1.00000 0.000  1 0.000
#> SRR1643459     2    0.00    1.00000 0.000  1 0.000
#> SRR1643460     2    0.00    1.00000 0.000  1 0.000
#> SRR1643461     2    0.00    1.00000 0.000  1 0.000
#> SRR1643462     2    0.00    1.00000 0.000  1 0.000
#> SRR1643463     2    0.00    1.00000 0.000  1 0.000
#> SRR1643464     2    0.00    1.00000 0.000  1 0.000
#> SRR1643466     2    0.00    1.00000 0.000  1 0.000
#> SRR1643467     2    0.00    1.00000 0.000  1 0.000
#> SRR1643468     2    0.00    1.00000 0.000  1 0.000
#> SRR1643469     2    0.00    1.00000 0.000  1 0.000
#> SRR1643470     2    0.00    1.00000 0.000  1 0.000
#> SRR1643471     2    0.00    1.00000 0.000  1 0.000
#> SRR1643472     2    0.00    1.00000 0.000  1 0.000
#> SRR1643473     2    0.00    1.00000 0.000  1 0.000
#> SRR1643474     2    0.00    1.00000 0.000  1 0.000
#> SRR1643475     2    0.00    1.00000 0.000  1 0.000
#> SRR1643477     2    0.00    1.00000 0.000  1 0.000
#> SRR1643478     2    0.00    1.00000 0.000  1 0.000
#> SRR1643479     2    0.00    1.00000 0.000  1 0.000
#> SRR1643480     2    0.00    1.00000 0.000  1 0.000
#> SRR1643481     2    0.00    1.00000 0.000  1 0.000
#> SRR1643482     2    0.00    1.00000 0.000  1 0.000
#> SRR1643483     2    0.00    1.00000 0.000  1 0.000
#> SRR1643484     2    0.00    1.00000 0.000  1 0.000
#> SRR1643485     2    0.00    1.00000 0.000  1 0.000
#> SRR1643486     2    0.00    1.00000 0.000  1 0.000
#> SRR1643487     2    0.00    1.00000 0.000  1 0.000
#> SRR1643488     2    0.00    1.00000 0.000  1 0.000
#> SRR1643489     2    0.00    1.00000 0.000  1 0.000
#> SRR1643490     2    0.00    1.00000 0.000  1 0.000
#> SRR1643491     2    0.00    1.00000 0.000  1 0.000
#> SRR1643492     2    0.00    1.00000 0.000  1 0.000
#> SRR1643493     2    0.00    1.00000 0.000  1 0.000
#> SRR1643494     2    0.00    1.00000 0.000  1 0.000
#> SRR1643495     2    0.00    1.00000 0.000  1 0.000
#> SRR1643496     2    0.00    1.00000 0.000  1 0.000
#> SRR1643497     2    0.00    1.00000 0.000  1 0.000
#> SRR1643498     2    0.00    1.00000 0.000  1 0.000
#> SRR1643499     2    0.00    1.00000 0.000  1 0.000
#> SRR1643500     2    0.00    1.00000 0.000  1 0.000
#> SRR1643501     2    0.00    1.00000 0.000  1 0.000
#> SRR1643502     2    0.00    1.00000 0.000  1 0.000
#> SRR1643503     2    0.00    1.00000 0.000  1 0.000
#> SRR1643504     2    0.00    1.00000 0.000  1 0.000
#> SRR1643505     2    0.00    1.00000 0.000  1 0.000
#> SRR1643506     2    0.00    1.00000 0.000  1 0.000
#> SRR1643507     2    0.00    1.00000 0.000  1 0.000
#> SRR1643508     2    0.00    1.00000 0.000  1 0.000
#> SRR1643509     2    0.00    1.00000 0.000  1 0.000
#> SRR1643510     2    0.00    1.00000 0.000  1 0.000
#> SRR1643511     2    0.00    1.00000 0.000  1 0.000
#> SRR1643512     2    0.00    1.00000 0.000  1 0.000
#> SRR1643513     2    0.00    1.00000 0.000  1 0.000
#> SRR1643531     2    0.00    1.00000 0.000  1 0.000
#> SRR1643532     2    0.00    1.00000 0.000  1 0.000
#> SRR1643533     2    0.00    1.00000 0.000  1 0.000
#> SRR1643534     2    0.00    1.00000 0.000  1 0.000
#> SRR1643535     2    0.00    1.00000 0.000  1 0.000
#> SRR1643536     2    0.00    1.00000 0.000  1 0.000
#> SRR1643537     2    0.00    1.00000 0.000  1 0.000
#> SRR1643538     2    0.00    1.00000 0.000  1 0.000
#> SRR1643539     2    0.00    1.00000 0.000  1 0.000
#> SRR1643540     2    0.00    1.00000 0.000  1 0.000
#> SRR1643541     2    0.00    1.00000 0.000  1 0.000
#> SRR1643542     2    0.00    1.00000 0.000  1 0.000
#> SRR1643543     2    0.00    1.00000 0.000  1 0.000
#> SRR1643544     2    0.00    1.00000 0.000  1 0.000
#> SRR1643514     2    0.00    1.00000 0.000  1 0.000
#> SRR1643515     2    0.00    1.00000 0.000  1 0.000
#> SRR1643516     2    0.00    1.00000 0.000  1 0.000
#> SRR1643517     2    0.00    1.00000 0.000  1 0.000
#> SRR1643518     2    0.00    1.00000 0.000  1 0.000
#> SRR1643519     2    0.00    1.00000 0.000  1 0.000
#> SRR1643520     2    0.00    1.00000 0.000  1 0.000
#> SRR1643521     2    0.00    1.00000 0.000  1 0.000
#> SRR1643522     2    0.00    1.00000 0.000  1 0.000
#> SRR1643523     2    0.00    1.00000 0.000  1 0.000
#> SRR1643524     2    0.00    1.00000 0.000  1 0.000
#> SRR1643525     2    0.00    1.00000 0.000  1 0.000
#> SRR1643526     2    0.00    1.00000 0.000  1 0.000
#> SRR1643527     2    0.00    1.00000 0.000  1 0.000
#> SRR1643528     2    0.00    1.00000 0.000  1 0.000
#> SRR1643529     2    0.00    1.00000 0.000  1 0.000
#> SRR1643530     2    0.00    1.00000 0.000  1 0.000
#> SRR1643545     2    0.00    1.00000 0.000  1 0.000
#> SRR1643546     2    0.00    1.00000 0.000  1 0.000
#> SRR1643547     2    0.00    1.00000 0.000  1 0.000
#> SRR1643548     2    0.00    1.00000 0.000  1 0.000
#> SRR1643549     2    0.00    1.00000 0.000  1 0.000
#> SRR1643550     2    0.00    1.00000 0.000  1 0.000
#> SRR1643551     2    0.00    1.00000 0.000  1 0.000
#> SRR1643552     2    0.00    1.00000 0.000  1 0.000
#> SRR1643553     2    0.00    1.00000 0.000  1 0.000
#> SRR1643554     2    0.00    1.00000 0.000  1 0.000
#> SRR1643555     2    0.00    1.00000 0.000  1 0.000
#> SRR1643556     2    0.00    1.00000 0.000  1 0.000
#> SRR1643558     2    0.00    1.00000 0.000  1 0.000
#> SRR1643559     2    0.00    1.00000 0.000  1 0.000
#> SRR1643560     2    0.00    1.00000 0.000  1 0.000
#> SRR1643561     2    0.00    1.00000 0.000  1 0.000
#> SRR1643562     2    0.00    1.00000 0.000  1 0.000
#> SRR1643563     2    0.00    1.00000 0.000  1 0.000
#> SRR1643564     2    0.00    1.00000 0.000  1 0.000
#> SRR1643565     2    0.00    1.00000 0.000  1 0.000
#> SRR1643566     2    0.00    1.00000 0.000  1 0.000
#> SRR1643567     2    0.00    1.00000 0.000  1 0.000
#> SRR1643568     2    0.00    1.00000 0.000  1 0.000
#> SRR1643569     2    0.00    1.00000 0.000  1 0.000
#> SRR1643570     2    0.00    1.00000 0.000  1 0.000
#> SRR1643571     2    0.00    1.00000 0.000  1 0.000
#> SRR1643572     2    0.00    1.00000 0.000  1 0.000

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1    p2    p3   p4
#> SRR1643167     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643168     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643169     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643170     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643171     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643172     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643173     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643174     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643175     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643176     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643177     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643178     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643180     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643181     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643182     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643183     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643184     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643185     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643186     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643187     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643188     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643189     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643190     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643191     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643192     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643193     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643194     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643195     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643196     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643197     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643198     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643199     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643200     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643201     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643202     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643203     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643204     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643205     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643206     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643207     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643208     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643209     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643210     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643211     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643212     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643213     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643214     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643215     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643216     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643217     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643218     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643219     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643220     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643221     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643222     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643223     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643224     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643225     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643226     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643227     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643228     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643229     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643230     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643231     4   0.164      1.000 0.060 0.000 0.000 0.94
#> SRR1643232     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643233     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643234     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643235     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643236     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643237     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643238     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643239     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643240     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643241     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643242     4   0.164      1.000 0.060 0.000 0.000 0.94
#> SRR1643243     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643245     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643246     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643247     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643248     3   0.407      1.000 0.252 0.000 0.748 0.00
#> SRR1643249     4   0.164      1.000 0.060 0.000 0.000 0.94
#> SRR1643250     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643251     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643252     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643253     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643254     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643255     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643256     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643257     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643258     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643259     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643260     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643261     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643262     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643263     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643264     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643266     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643267     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643268     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643269     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643270     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643271     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643272     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643273     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643274     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643275     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643276     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643277     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643278     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643279     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643280     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643281     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643282     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643283     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643284     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643285     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643286     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643287     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643288     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643289     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643290     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643291     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643292     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643293     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643294     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643295     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643296     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643297     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643298     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643299     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643300     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643301     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643302     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643303     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643304     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643305     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643306     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643307     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643308     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643309     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643310     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643311     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643312     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643313     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643314     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643315     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643316     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643317     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643318     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643319     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643320     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643321     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643322     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643323     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643324     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643325     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643326     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643327     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643328     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643329     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643330     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643331     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643332     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643333     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643334     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643335     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643336     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643337     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643338     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643339     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643340     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643341     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643342     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643343     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643344     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643345     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643346     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643347     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643348     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643349     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643350     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643351     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643352     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643353     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643354     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643355     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643356     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643357     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643358     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643359     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643360     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643361     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643362     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643363     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643364     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643365     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643366     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643367     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643368     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643369     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643370     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643371     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643372     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643373     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643374     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643375     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643376     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643377     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643378     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643379     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643380     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643381     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643382     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643383     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643384     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643385     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643386     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643387     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643388     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643389     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643390     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643391     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643392     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643393     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643394     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643395     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643396     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643397     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643398     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643399     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643400     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643401     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643402     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643403     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643404     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643405     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643406     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643407     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643408     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643409     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643410     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643411     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643412     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643413     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643414     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643415     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643416     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643417     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643418     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643419     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643420     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643421     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643422     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643423     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643424     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643425     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643426     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643427     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643428     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643429     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643430     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643431     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643432     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643433     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643434     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643435     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643436     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643437     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643438     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643439     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643440     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643441     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643442     1   0.000      1.000 1.000 0.000 0.000 0.00
#> SRR1643443     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643444     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643445     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643446     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643447     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643448     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643449     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643450     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643451     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643452     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643453     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643454     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643455     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643456     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643457     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643458     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643459     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643460     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643461     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643462     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643463     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643464     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643466     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643467     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643468     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643469     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643470     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643471     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643472     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643473     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643474     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643475     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643477     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643478     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643479     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643480     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643481     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643482     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643483     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643484     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643485     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643486     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643487     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643488     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643489     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643490     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643491     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643492     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643493     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643494     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643495     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643496     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643497     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643498     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643499     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643500     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643501     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643502     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643503     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643504     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643505     2   0.558      0.562 0.000 0.688 0.252 0.06
#> SRR1643506     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643507     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643508     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643509     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643510     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643511     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643512     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643513     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643531     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643532     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643533     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643534     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643535     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643536     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643537     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643538     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643539     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643540     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643541     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643542     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643543     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643544     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643514     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643515     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643516     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643517     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643518     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643519     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643520     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643521     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643522     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643523     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643524     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643525     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643526     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643527     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643528     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643529     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643530     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643545     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643546     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643547     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643548     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643549     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643550     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643551     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643552     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643553     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643554     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643555     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643556     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643558     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643559     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643560     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643561     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643562     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643563     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643564     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643565     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643566     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643567     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643568     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643569     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643570     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643571     2   0.000      0.998 0.000 1.000 0.000 0.00
#> SRR1643572     2   0.000      0.998 0.000 1.000 0.000 0.00

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette p1 p2 p3 p4 p5
#> SRR1643167     1       0          1  1  0  0  0  0
#> SRR1643168     1       0          1  1  0  0  0  0
#> SRR1643169     1       0          1  1  0  0  0  0
#> SRR1643170     1       0          1  1  0  0  0  0
#> SRR1643171     1       0          1  1  0  0  0  0
#> SRR1643172     1       0          1  1  0  0  0  0
#> SRR1643173     1       0          1  1  0  0  0  0
#> SRR1643174     1       0          1  1  0  0  0  0
#> SRR1643175     1       0          1  1  0  0  0  0
#> SRR1643176     1       0          1  1  0  0  0  0
#> SRR1643177     1       0          1  1  0  0  0  0
#> SRR1643178     1       0          1  1  0  0  0  0
#> SRR1643180     1       0          1  1  0  0  0  0
#> SRR1643181     1       0          1  1  0  0  0  0
#> SRR1643182     1       0          1  1  0  0  0  0
#> SRR1643183     1       0          1  1  0  0  0  0
#> SRR1643184     1       0          1  1  0  0  0  0
#> SRR1643185     1       0          1  1  0  0  0  0
#> SRR1643186     1       0          1  1  0  0  0  0
#> SRR1643187     1       0          1  1  0  0  0  0
#> SRR1643188     1       0          1  1  0  0  0  0
#> SRR1643189     1       0          1  1  0  0  0  0
#> SRR1643190     1       0          1  1  0  0  0  0
#> SRR1643191     1       0          1  1  0  0  0  0
#> SRR1643192     1       0          1  1  0  0  0  0
#> SRR1643193     1       0          1  1  0  0  0  0
#> SRR1643194     1       0          1  1  0  0  0  0
#> SRR1643195     1       0          1  1  0  0  0  0
#> SRR1643196     1       0          1  1  0  0  0  0
#> SRR1643197     1       0          1  1  0  0  0  0
#> SRR1643198     1       0          1  1  0  0  0  0
#> SRR1643199     1       0          1  1  0  0  0  0
#> SRR1643200     1       0          1  1  0  0  0  0
#> SRR1643201     1       0          1  1  0  0  0  0
#> SRR1643202     1       0          1  1  0  0  0  0
#> SRR1643203     1       0          1  1  0  0  0  0
#> SRR1643204     1       0          1  1  0  0  0  0
#> SRR1643205     3       0          1  0  0  1  0  0
#> SRR1643206     3       0          1  0  0  1  0  0
#> SRR1643207     3       0          1  0  0  1  0  0
#> SRR1643208     3       0          1  0  0  1  0  0
#> SRR1643209     3       0          1  0  0  1  0  0
#> SRR1643210     3       0          1  0  0  1  0  0
#> SRR1643211     3       0          1  0  0  1  0  0
#> SRR1643212     3       0          1  0  0  1  0  0
#> SRR1643213     3       0          1  0  0  1  0  0
#> SRR1643214     3       0          1  0  0  1  0  0
#> SRR1643215     3       0          1  0  0  1  0  0
#> SRR1643216     3       0          1  0  0  1  0  0
#> SRR1643217     3       0          1  0  0  1  0  0
#> SRR1643218     3       0          1  0  0  1  0  0
#> SRR1643219     3       0          1  0  0  1  0  0
#> SRR1643220     3       0          1  0  0  1  0  0
#> SRR1643221     3       0          1  0  0  1  0  0
#> SRR1643222     3       0          1  0  0  1  0  0
#> SRR1643223     3       0          1  0  0  1  0  0
#> SRR1643224     3       0          1  0  0  1  0  0
#> SRR1643225     3       0          1  0  0  1  0  0
#> SRR1643226     3       0          1  0  0  1  0  0
#> SRR1643227     3       0          1  0  0  1  0  0
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#> SRR1643555     2       0          1  0  1  0  0  0
#> SRR1643556     2       0          1  0  1  0  0  0
#> SRR1643558     2       0          1  0  1  0  0  0
#> SRR1643559     2       0          1  0  1  0  0  0
#> SRR1643560     2       0          1  0  1  0  0  0
#> SRR1643561     2       0          1  0  1  0  0  0
#> SRR1643562     2       0          1  0  1  0  0  0
#> SRR1643563     2       0          1  0  1  0  0  0
#> SRR1643564     2       0          1  0  1  0  0  0
#> SRR1643565     2       0          1  0  1  0  0  0
#> SRR1643566     2       0          1  0  1  0  0  0
#> SRR1643567     2       0          1  0  1  0  0  0
#> SRR1643568     2       0          1  0  1  0  0  0
#> SRR1643569     2       0          1  0  1  0  0  0
#> SRR1643570     2       0          1  0  1  0  0  0
#> SRR1643571     2       0          1  0  1  0  0  0
#> SRR1643572     2       0          1  0  1  0  0  0

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette p1 p2    p3 p4    p5 p6
#> SRR1643167     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643168     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643169     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643170     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643171     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643172     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643173     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643174     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643175     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643176     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643177     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643178     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643180     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643181     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643182     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643183     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643184     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643185     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643186     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643187     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643188     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643189     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643190     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643191     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643192     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643193     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643194     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643195     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643196     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643197     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643198     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643199     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643200     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643201     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643202     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643203     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643204     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643205     5  0.0363      0.985  0  0 0.012  0 0.988  0
#> SRR1643206     5  0.0363      0.985  0  0 0.012  0 0.988  0
#> SRR1643207     5  0.0363      0.985  0  0 0.012  0 0.988  0
#> SRR1643208     5  0.0363      0.985  0  0 0.012  0 0.988  0
#> SRR1643209     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643210     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643211     5  0.0000      0.995  0  0 0.000  0 1.000  0
#> SRR1643212     5  0.0000      0.995  0  0 0.000  0 1.000  0
#> SRR1643213     5  0.0000      0.995  0  0 0.000  0 1.000  0
#> SRR1643214     5  0.0000      0.995  0  0 0.000  0 1.000  0
#> SRR1643215     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643216     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643217     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643218     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643219     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643220     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643221     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643222     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643223     3  0.1007      0.950  0  0 0.956  0 0.044  0
#> SRR1643224     3  0.1007      0.950  0  0 0.956  0 0.044  0
#> SRR1643225     3  0.1007      0.950  0  0 0.956  0 0.044  0
#> SRR1643226     3  0.1007      0.950  0  0 0.956  0 0.044  0
#> SRR1643227     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643228     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643229     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643230     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643231     4  0.0000      1.000  0  0 0.000  1 0.000  0
#> SRR1643232     5  0.0000      0.995  0  0 0.000  0 1.000  0
#> SRR1643233     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643234     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643235     5  0.0000      0.995  0  0 0.000  0 1.000  0
#> SRR1643236     5  0.0000      0.995  0  0 0.000  0 1.000  0
#> SRR1643237     5  0.0000      0.995  0  0 0.000  0 1.000  0
#> SRR1643238     5  0.0000      0.995  0  0 0.000  0 1.000  0
#> SRR1643239     5  0.0000      0.995  0  0 0.000  0 1.000  0
#> SRR1643240     5  0.0000      0.995  0  0 0.000  0 1.000  0
#> SRR1643241     5  0.0000      0.995  0  0 0.000  0 1.000  0
#> SRR1643242     4  0.0000      1.000  0  0 0.000  1 0.000  0
#> SRR1643243     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643245     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643246     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643247     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643248     3  0.0000      0.991  0  0 1.000  0 0.000  0
#> SRR1643249     4  0.0000      1.000  0  0 0.000  1 0.000  0
#> SRR1643250     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643251     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643252     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643253     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643254     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643255     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643256     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643257     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643258     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643259     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643260     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643261     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643262     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643263     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643264     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643266     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643267     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643268     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643269     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643270     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643271     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643272     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643273     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643274     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643275     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643276     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643277     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643278     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643279     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643280     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643281     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643282     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643283     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643284     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643285     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643286     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643287     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643288     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643289     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643290     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643291     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643292     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643293     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643294     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643295     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643296     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643297     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643298     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643299     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643300     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643301     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643302     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643303     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643304     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643305     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643306     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643307     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643308     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643309     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643310     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643311     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643312     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643313     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643314     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643315     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643316     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643317     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643318     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643319     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643320     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643321     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643322     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643323     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643324     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643325     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643326     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643327     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643328     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643329     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643330     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643331     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643332     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643333     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643334     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643335     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643336     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643337     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643338     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643339     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643340     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643341     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643342     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643343     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643344     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643345     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643346     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643347     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643348     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643349     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643350     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643351     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643352     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643353     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643354     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643355     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643356     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643357     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643358     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643359     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643360     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643361     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643362     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643363     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643364     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643365     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643366     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643367     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643368     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643369     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643370     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643371     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643372     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643373     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643374     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643375     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643376     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643377     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643378     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643379     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643380     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643381     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643382     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643383     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643384     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643385     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643386     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643387     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643388     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643389     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643390     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643391     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643392     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643393     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643394     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643395     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643396     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643397     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643398     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643399     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643400     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643401     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643402     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643403     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643404     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643405     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643406     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643407     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643408     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643409     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643410     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643411     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643412     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643413     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643414     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643415     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643416     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643417     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643418     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643419     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643420     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643421     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643422     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643423     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643424     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643425     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643426     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643427     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643428     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643429     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643430     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643431     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643432     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643433     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643434     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643435     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643436     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643437     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643438     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643439     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643440     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643441     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643442     1  0.0000      1.000  1  0 0.000  0 0.000  0
#> SRR1643443     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643444     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643445     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643446     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643447     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643448     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643449     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643450     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643451     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643452     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643453     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643454     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643455     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643456     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643457     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643458     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643459     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643460     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643461     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643462     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643463     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643464     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643466     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643467     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643468     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643469     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643470     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643471     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643472     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643473     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643474     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643475     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643477     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643478     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643479     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643480     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643481     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643482     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643483     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643484     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643485     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643486     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643487     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643488     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643489     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643490     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643491     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643492     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643493     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643494     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643495     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643496     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643497     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643498     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643499     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643500     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643501     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643502     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643503     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643504     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643505     6  0.0000      0.000  0  0 0.000  0 0.000  1
#> SRR1643506     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643507     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643508     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643509     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643510     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643511     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643512     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643513     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643531     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643532     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643533     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643534     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643535     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643536     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643537     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643538     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643539     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643540     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643541     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643542     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643543     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643544     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643514     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643515     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643516     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643517     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643518     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643519     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643520     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643521     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643522     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643523     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643524     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643525     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643526     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643527     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643528     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643529     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643530     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643545     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643546     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643547     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643548     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643549     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643550     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643551     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643552     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643553     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643554     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643555     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643556     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643558     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643559     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643560     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643561     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643562     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643563     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643564     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643565     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643566     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643567     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643568     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643569     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643570     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643571     2  0.0000      1.000  0  1 0.000  0 0.000  0
#> SRR1643572     2  0.0000      1.000  0  1 0.000  0 0.000  0

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-ATC-hclust-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-ATC-hclust-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-ATC-hclust-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-ATC-hclust-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-ATC-hclust-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-ATC-hclust-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-ATC-hclust-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-ATC-hclust-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-ATC-hclust-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-ATC-hclust-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-ATC-hclust-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-ATC-hclust-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-ATC-hclust-get-signatures-3

get_signatures(res, k = 5)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-ATC-hclust-get-signatures-4

get_signatures(res, k = 6)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-ATC-hclust-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-ATC-hclust-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-ATC-hclust-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-ATC-hclust-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-ATC-hclust-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-ATC-hclust-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk ATC-hclust-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-ATC-hclust-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-ATC-hclust-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-ATC-hclust-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-ATC-hclust-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-ATC-hclust-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk ATC-hclust-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


ATC:kmeans**

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["ATC", "kmeans"]
# you can also extract it by
# res = res_list["ATC:kmeans"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'ATC' method.
#>   Subgroups are detected by 'kmeans' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 2.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk ATC-kmeans-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk ATC-kmeans-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000         0.4350 0.566   0.566
#> 3 3 0.673           0.868       0.838         0.2593 0.876   0.781
#> 4 4 0.549           0.778       0.797         0.1661 1.000   1.000
#> 5 5 0.589           0.462       0.719         0.1026 0.931   0.844
#> 6 6 0.601           0.703       0.689         0.0542 0.836   0.581

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 2

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1    p2    p3
#> SRR1643167     1  0.4062      0.759 0.836 0.000 0.164
#> SRR1643168     1  0.4062      0.759 0.836 0.000 0.164
#> SRR1643169     1  0.4062      0.759 0.836 0.000 0.164
#> SRR1643170     1  0.4062      0.759 0.836 0.000 0.164
#> SRR1643171     1  0.4235      0.745 0.824 0.000 0.176
#> SRR1643172     1  0.4235      0.745 0.824 0.000 0.176
#> SRR1643173     1  0.4235      0.745 0.824 0.000 0.176
#> SRR1643174     1  0.4235      0.745 0.824 0.000 0.176
#> SRR1643175     1  0.3412      0.791 0.876 0.000 0.124
#> SRR1643176     1  0.3412      0.791 0.876 0.000 0.124
#> SRR1643177     1  0.3412      0.791 0.876 0.000 0.124
#> SRR1643178     1  0.3412      0.791 0.876 0.000 0.124
#> SRR1643180     1  0.4121      0.755 0.832 0.000 0.168
#> SRR1643181     1  0.4121      0.755 0.832 0.000 0.168
#> SRR1643182     1  0.4121      0.755 0.832 0.000 0.168
#> SRR1643183     1  0.4178      0.750 0.828 0.000 0.172
#> SRR1643184     1  0.4178      0.750 0.828 0.000 0.172
#> SRR1643185     1  0.4178      0.750 0.828 0.000 0.172
#> SRR1643186     1  0.4178      0.750 0.828 0.000 0.172
#> SRR1643187     1  0.3267      0.779 0.884 0.000 0.116
#> SRR1643188     1  0.3267      0.779 0.884 0.000 0.116
#> SRR1643189     1  0.3267      0.779 0.884 0.000 0.116
#> SRR1643190     1  0.3267      0.779 0.884 0.000 0.116
#> SRR1643191     1  0.4121      0.753 0.832 0.000 0.168
#> SRR1643192     1  0.4121      0.753 0.832 0.000 0.168
#> SRR1643193     1  0.3816      0.771 0.852 0.000 0.148
#> SRR1643194     1  0.3816      0.771 0.852 0.000 0.148
#> SRR1643195     1  0.3752      0.744 0.856 0.000 0.144
#> SRR1643196     1  0.3752      0.744 0.856 0.000 0.144
#> SRR1643197     1  0.3192      0.816 0.888 0.000 0.112
#> SRR1643198     1  0.3192      0.816 0.888 0.000 0.112
#> SRR1643199     1  0.4121      0.755 0.832 0.000 0.168
#> SRR1643200     1  0.4121      0.755 0.832 0.000 0.168
#> SRR1643201     1  0.4002      0.743 0.840 0.000 0.160
#> SRR1643202     1  0.4002      0.743 0.840 0.000 0.160
#> SRR1643203     1  0.3752      0.772 0.856 0.000 0.144
#> SRR1643204     1  0.3752      0.772 0.856 0.000 0.144
#> SRR1643205     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643206     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643207     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643208     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643209     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643210     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643211     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643212     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643213     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643214     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643215     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643216     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643217     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643218     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643219     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643220     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643221     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643222     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643223     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643224     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643225     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643226     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643227     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643228     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643229     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643230     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643231     3  0.6291      0.982 0.468 0.000 0.532
#> SRR1643232     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643233     3  0.6302      0.990 0.480 0.000 0.520
#> SRR1643234     3  0.6302      0.990 0.480 0.000 0.520
#> SRR1643235     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643236     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643237     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643238     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643239     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643240     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643241     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643242     3  0.6291      0.982 0.468 0.000 0.532
#> SRR1643243     3  0.6295      0.991 0.472 0.000 0.528
#> SRR1643245     3  0.6295      0.991 0.472 0.000 0.528
#> SRR1643246     3  0.6295      0.991 0.472 0.000 0.528
#> SRR1643247     3  0.6295      0.991 0.472 0.000 0.528
#> SRR1643248     3  0.6299      0.998 0.476 0.000 0.524
#> SRR1643249     1  0.5254      0.551 0.736 0.000 0.264
#> SRR1643250     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643251     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643252     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643253     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643254     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643255     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643256     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643257     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643258     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643259     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643260     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643261     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643262     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643263     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643264     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643266     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643267     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643268     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643269     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643270     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643271     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643272     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643273     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643274     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643275     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643276     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643277     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643278     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643279     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643280     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643281     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643282     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643283     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643284     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643285     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643286     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643287     1  0.1964      0.837 0.944 0.000 0.056
#> SRR1643288     1  0.1964      0.837 0.944 0.000 0.056
#> SRR1643289     1  0.1964      0.837 0.944 0.000 0.056
#> SRR1643290     1  0.1964      0.837 0.944 0.000 0.056
#> SRR1643291     1  0.1964      0.837 0.944 0.000 0.056
#> SRR1643292     1  0.1964      0.837 0.944 0.000 0.056
#> SRR1643293     1  0.1964      0.837 0.944 0.000 0.056
#> SRR1643294     1  0.1964      0.837 0.944 0.000 0.056
#> SRR1643295     1  0.1964      0.837 0.944 0.000 0.056
#> SRR1643296     1  0.1964      0.837 0.944 0.000 0.056
#> SRR1643297     1  0.1964      0.837 0.944 0.000 0.056
#> SRR1643298     1  0.1964      0.837 0.944 0.000 0.056
#> SRR1643299     1  0.1964      0.837 0.944 0.000 0.056
#> SRR1643300     1  0.1964      0.837 0.944 0.000 0.056
#> SRR1643301     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643302     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643303     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643304     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643305     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643306     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643307     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643308     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643309     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643310     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643311     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643312     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643313     1  0.1411      0.843 0.964 0.000 0.036
#> SRR1643314     1  0.2959      0.797 0.900 0.000 0.100
#> SRR1643315     1  0.2959      0.797 0.900 0.000 0.100
#> SRR1643316     1  0.2959      0.797 0.900 0.000 0.100
#> SRR1643317     1  0.2959      0.797 0.900 0.000 0.100
#> SRR1643318     1  0.2959      0.797 0.900 0.000 0.100
#> SRR1643319     1  0.2625      0.811 0.916 0.000 0.084
#> SRR1643320     1  0.2959      0.797 0.900 0.000 0.100
#> SRR1643321     1  0.2959      0.797 0.900 0.000 0.100
#> SRR1643322     1  0.2959      0.797 0.900 0.000 0.100
#> SRR1643323     1  0.2959      0.797 0.900 0.000 0.100
#> SRR1643324     1  0.2959      0.797 0.900 0.000 0.100
#> SRR1643325     1  0.2959      0.797 0.900 0.000 0.100
#> SRR1643326     1  0.2959      0.797 0.900 0.000 0.100
#> SRR1643327     1  0.2959      0.797 0.900 0.000 0.100
#> SRR1643328     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643329     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643330     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643331     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643332     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643333     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643334     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643335     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643336     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643337     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643338     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643339     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643340     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643341     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643342     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643343     1  0.1411      0.841 0.964 0.000 0.036
#> SRR1643344     1  0.1411      0.841 0.964 0.000 0.036
#> SRR1643345     1  0.1411      0.841 0.964 0.000 0.036
#> SRR1643346     1  0.1411      0.841 0.964 0.000 0.036
#> SRR1643347     1  0.1411      0.841 0.964 0.000 0.036
#> SRR1643348     1  0.1411      0.841 0.964 0.000 0.036
#> SRR1643349     1  0.1411      0.841 0.964 0.000 0.036
#> SRR1643350     1  0.1411      0.841 0.964 0.000 0.036
#> SRR1643351     1  0.1411      0.841 0.964 0.000 0.036
#> SRR1643352     1  0.1411      0.841 0.964 0.000 0.036
#> SRR1643353     1  0.1411      0.841 0.964 0.000 0.036
#> SRR1643354     1  0.1411      0.841 0.964 0.000 0.036
#> SRR1643355     1  0.1411      0.841 0.964 0.000 0.036
#> SRR1643356     1  0.1411      0.841 0.964 0.000 0.036
#> SRR1643357     1  0.1411      0.841 0.964 0.000 0.036
#> SRR1643358     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643359     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643360     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643361     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643362     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643363     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643364     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643365     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643366     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643367     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643368     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643369     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643370     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643371     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643372     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643373     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643374     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643375     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643376     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643377     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643378     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643379     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643380     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643381     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643382     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643383     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643384     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643385     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643386     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643387     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643388     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643389     1  0.1860      0.839 0.948 0.000 0.052
#> SRR1643390     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643391     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643392     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643393     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643394     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643395     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643396     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643397     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643398     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643399     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643400     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643401     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643402     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643403     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643404     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643405     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643406     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643407     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643408     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643409     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643410     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643411     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643412     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643413     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643414     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643415     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643416     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643417     1  0.3116      0.791 0.892 0.000 0.108
#> SRR1643418     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643419     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643420     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643421     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643422     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643423     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643424     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643425     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643426     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643427     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643428     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643429     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643430     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643431     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643432     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643433     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643434     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643435     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643436     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643437     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643438     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643439     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643440     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643441     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643442     1  0.3412      0.766 0.876 0.000 0.124
#> SRR1643443     2  0.3686      0.930 0.000 0.860 0.140
#> SRR1643444     2  0.3686      0.930 0.000 0.860 0.140
#> SRR1643445     2  0.3686      0.930 0.000 0.860 0.140
#> SRR1643446     2  0.3686      0.930 0.000 0.860 0.140
#> SRR1643447     2  0.3686      0.930 0.000 0.860 0.140
#> SRR1643448     2  0.3686      0.930 0.000 0.860 0.140
#> SRR1643449     2  0.3686      0.930 0.000 0.860 0.140
#> SRR1643450     2  0.3686      0.930 0.000 0.860 0.140
#> SRR1643451     2  0.3686      0.930 0.000 0.860 0.140
#> SRR1643452     2  0.3686      0.930 0.000 0.860 0.140
#> SRR1643453     2  0.3686      0.930 0.000 0.860 0.140
#> SRR1643454     2  0.3686      0.930 0.000 0.860 0.140
#> SRR1643455     2  0.3686      0.930 0.000 0.860 0.140
#> SRR1643456     2  0.0747      0.945 0.000 0.984 0.016
#> SRR1643457     2  0.0747      0.945 0.000 0.984 0.016
#> SRR1643458     2  0.0747      0.945 0.000 0.984 0.016
#> SRR1643459     2  0.0747      0.945 0.000 0.984 0.016
#> SRR1643460     2  0.0747      0.945 0.000 0.984 0.016
#> SRR1643461     2  0.0747      0.945 0.000 0.984 0.016
#> SRR1643462     2  0.0747      0.945 0.000 0.984 0.016
#> SRR1643463     2  0.0747      0.945 0.000 0.984 0.016
#> SRR1643464     2  0.0747      0.945 0.000 0.984 0.016
#> SRR1643466     2  0.0747      0.945 0.000 0.984 0.016
#> SRR1643467     2  0.0747      0.945 0.000 0.984 0.016
#> SRR1643468     2  0.0892      0.945 0.000 0.980 0.020
#> SRR1643469     2  0.0892      0.945 0.000 0.980 0.020
#> SRR1643470     2  0.0892      0.945 0.000 0.980 0.020
#> SRR1643471     2  0.0892      0.945 0.000 0.980 0.020
#> SRR1643472     2  0.0892      0.945 0.000 0.980 0.020
#> SRR1643473     2  0.0892      0.945 0.000 0.980 0.020
#> SRR1643474     2  0.0892      0.945 0.000 0.980 0.020
#> SRR1643475     2  0.0892      0.945 0.000 0.980 0.020
#> SRR1643477     2  0.0892      0.945 0.000 0.980 0.020
#> SRR1643478     2  0.0892      0.945 0.000 0.980 0.020
#> SRR1643479     2  0.0892      0.945 0.000 0.980 0.020
#> SRR1643480     2  0.0892      0.945 0.000 0.980 0.020
#> SRR1643481     2  0.1031      0.945 0.000 0.976 0.024
#> SRR1643482     2  0.1031      0.945 0.000 0.976 0.024
#> SRR1643483     2  0.1031      0.945 0.000 0.976 0.024
#> SRR1643484     2  0.1031      0.945 0.000 0.976 0.024
#> SRR1643485     2  0.1031      0.945 0.000 0.976 0.024
#> SRR1643486     2  0.1031      0.945 0.000 0.976 0.024
#> SRR1643487     2  0.1031      0.945 0.000 0.976 0.024
#> SRR1643488     2  0.1031      0.945 0.000 0.976 0.024
#> SRR1643489     2  0.1031      0.945 0.000 0.976 0.024
#> SRR1643490     2  0.1031      0.945 0.000 0.976 0.024
#> SRR1643491     2  0.1031      0.945 0.000 0.976 0.024
#> SRR1643492     2  0.1031      0.945 0.000 0.976 0.024
#> SRR1643493     2  0.1031      0.945 0.000 0.976 0.024
#> SRR1643494     2  0.1031      0.945 0.000 0.976 0.024
#> SRR1643495     2  0.1031      0.945 0.000 0.976 0.024
#> SRR1643496     2  0.1031      0.945 0.000 0.976 0.024
#> SRR1643497     2  0.1753      0.942 0.000 0.952 0.048
#> SRR1643498     2  0.1753      0.942 0.000 0.952 0.048
#> SRR1643499     2  0.1753      0.942 0.000 0.952 0.048
#> SRR1643500     2  0.1753      0.942 0.000 0.952 0.048
#> SRR1643501     2  0.1753      0.942 0.000 0.952 0.048
#> SRR1643502     2  0.1753      0.942 0.000 0.952 0.048
#> SRR1643503     2  0.1753      0.942 0.000 0.952 0.048
#> SRR1643504     2  0.1753      0.942 0.000 0.952 0.048
#> SRR1643505     2  0.2448      0.944 0.000 0.924 0.076
#> SRR1643506     2  0.1753      0.942 0.000 0.952 0.048
#> SRR1643507     2  0.1753      0.942 0.000 0.952 0.048
#> SRR1643508     2  0.1753      0.942 0.000 0.952 0.048
#> SRR1643509     2  0.1753      0.942 0.000 0.952 0.048
#> SRR1643510     2  0.1753      0.942 0.000 0.952 0.048
#> SRR1643511     2  0.1753      0.942 0.000 0.952 0.048
#> SRR1643512     2  0.1753      0.942 0.000 0.952 0.048
#> SRR1643513     2  0.1753      0.942 0.000 0.952 0.048
#> SRR1643531     2  0.3482      0.930 0.000 0.872 0.128
#> SRR1643532     2  0.3482      0.930 0.000 0.872 0.128
#> SRR1643533     2  0.3482      0.930 0.000 0.872 0.128
#> SRR1643534     2  0.3482      0.930 0.000 0.872 0.128
#> SRR1643535     2  0.3482      0.930 0.000 0.872 0.128
#> SRR1643536     2  0.3482      0.930 0.000 0.872 0.128
#> SRR1643537     2  0.3482      0.930 0.000 0.872 0.128
#> SRR1643538     2  0.3482      0.930 0.000 0.872 0.128
#> SRR1643539     2  0.3482      0.930 0.000 0.872 0.128
#> SRR1643540     2  0.3482      0.930 0.000 0.872 0.128
#> SRR1643541     2  0.3482      0.930 0.000 0.872 0.128
#> SRR1643542     2  0.3482      0.930 0.000 0.872 0.128
#> SRR1643543     2  0.3482      0.930 0.000 0.872 0.128
#> SRR1643544     2  0.3482      0.930 0.000 0.872 0.128
#> SRR1643514     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643515     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643516     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643517     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643518     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643519     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643520     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643521     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643522     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643523     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643524     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643525     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643526     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643527     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643528     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643529     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643530     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643545     2  0.1289      0.945 0.000 0.968 0.032
#> SRR1643546     2  0.1289      0.945 0.000 0.968 0.032
#> SRR1643547     2  0.1289      0.945 0.000 0.968 0.032
#> SRR1643548     2  0.1289      0.945 0.000 0.968 0.032
#> SRR1643549     2  0.1289      0.945 0.000 0.968 0.032
#> SRR1643550     2  0.1289      0.945 0.000 0.968 0.032
#> SRR1643551     2  0.1289      0.945 0.000 0.968 0.032
#> SRR1643552     2  0.1289      0.945 0.000 0.968 0.032
#> SRR1643553     2  0.1289      0.945 0.000 0.968 0.032
#> SRR1643554     2  0.1289      0.945 0.000 0.968 0.032
#> SRR1643555     2  0.1289      0.945 0.000 0.968 0.032
#> SRR1643556     2  0.1289      0.945 0.000 0.968 0.032
#> SRR1643558     2  0.1289      0.945 0.000 0.968 0.032
#> SRR1643559     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643560     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643561     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643562     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643563     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643564     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643565     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643566     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643567     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643568     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643569     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643570     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643571     2  0.3941      0.918 0.000 0.844 0.156
#> SRR1643572     2  0.3941      0.918 0.000 0.844 0.156

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1    p2    p3    p4
#> SRR1643167     1  0.5845     0.5749 0.672 0.000 0.076 0.252
#> SRR1643168     1  0.5845     0.5749 0.672 0.000 0.076 0.252
#> SRR1643169     1  0.5845     0.5749 0.672 0.000 0.076 0.252
#> SRR1643170     1  0.5845     0.5749 0.672 0.000 0.076 0.252
#> SRR1643171     1  0.5907     0.5650 0.680 0.000 0.092 0.228
#> SRR1643172     1  0.5907     0.5650 0.680 0.000 0.092 0.228
#> SRR1643173     1  0.5907     0.5650 0.680 0.000 0.092 0.228
#> SRR1643174     1  0.5907     0.5650 0.680 0.000 0.092 0.228
#> SRR1643175     1  0.5051     0.6374 0.768 0.000 0.100 0.132
#> SRR1643176     1  0.5051     0.6374 0.768 0.000 0.100 0.132
#> SRR1643177     1  0.5051     0.6374 0.768 0.000 0.100 0.132
#> SRR1643178     1  0.5051     0.6374 0.768 0.000 0.100 0.132
#> SRR1643180     1  0.5968     0.5685 0.664 0.000 0.084 0.252
#> SRR1643181     1  0.5968     0.5685 0.664 0.000 0.084 0.252
#> SRR1643182     1  0.5968     0.5685 0.664 0.000 0.084 0.252
#> SRR1643183     1  0.5968     0.5653 0.672 0.000 0.092 0.236
#> SRR1643184     1  0.5968     0.5653 0.672 0.000 0.092 0.236
#> SRR1643185     1  0.5968     0.5653 0.672 0.000 0.092 0.236
#> SRR1643186     1  0.5968     0.5653 0.672 0.000 0.092 0.236
#> SRR1643187     1  0.5716     0.5825 0.668 0.000 0.060 0.272
#> SRR1643188     1  0.5716     0.5825 0.668 0.000 0.060 0.272
#> SRR1643189     1  0.5716     0.5825 0.668 0.000 0.060 0.272
#> SRR1643190     1  0.5716     0.5825 0.668 0.000 0.060 0.272
#> SRR1643191     1  0.5968     0.5685 0.664 0.000 0.084 0.252
#> SRR1643192     1  0.5968     0.5685 0.664 0.000 0.084 0.252
#> SRR1643193     1  0.5781     0.5780 0.676 0.000 0.072 0.252
#> SRR1643194     1  0.5781     0.5780 0.676 0.000 0.072 0.252
#> SRR1643195     1  0.5855     0.5848 0.600 0.000 0.044 0.356
#> SRR1643196     1  0.5855     0.5848 0.600 0.000 0.044 0.356
#> SRR1643197     1  0.3935     0.6931 0.840 0.000 0.060 0.100
#> SRR1643198     1  0.3935     0.6931 0.840 0.000 0.060 0.100
#> SRR1643199     1  0.5845     0.5749 0.672 0.000 0.076 0.252
#> SRR1643200     1  0.5845     0.5749 0.672 0.000 0.076 0.252
#> SRR1643201     1  0.5672     0.5755 0.668 0.000 0.056 0.276
#> SRR1643202     1  0.5672     0.5755 0.668 0.000 0.056 0.276
#> SRR1643203     1  0.5837     0.5749 0.668 0.000 0.072 0.260
#> SRR1643204     1  0.5837     0.5749 0.668 0.000 0.072 0.260
#> SRR1643205     3  0.4327     0.9861 0.216 0.000 0.768 0.016
#> SRR1643206     3  0.4327     0.9861 0.216 0.000 0.768 0.016
#> SRR1643207     3  0.4327     0.9861 0.216 0.000 0.768 0.016
#> SRR1643208     3  0.4327     0.9861 0.216 0.000 0.768 0.016
#> SRR1643209     3  0.4635     0.9803 0.216 0.000 0.756 0.028
#> SRR1643210     3  0.4635     0.9803 0.216 0.000 0.756 0.028
#> SRR1643211     3  0.4212     0.9865 0.216 0.000 0.772 0.012
#> SRR1643212     3  0.4212     0.9865 0.216 0.000 0.772 0.012
#> SRR1643213     3  0.4212     0.9865 0.216 0.000 0.772 0.012
#> SRR1643214     3  0.4212     0.9865 0.216 0.000 0.772 0.012
#> SRR1643215     3  0.4728     0.9792 0.216 0.000 0.752 0.032
#> SRR1643216     3  0.4728     0.9792 0.216 0.000 0.752 0.032
#> SRR1643217     3  0.4728     0.9792 0.216 0.000 0.752 0.032
#> SRR1643218     3  0.4728     0.9792 0.216 0.000 0.752 0.032
#> SRR1643219     3  0.4728     0.9792 0.216 0.000 0.752 0.032
#> SRR1643220     3  0.4728     0.9792 0.216 0.000 0.752 0.032
#> SRR1643221     3  0.3945     0.9860 0.216 0.000 0.780 0.004
#> SRR1643222     3  0.3945     0.9860 0.216 0.000 0.780 0.004
#> SRR1643223     3  0.4327     0.9861 0.216 0.000 0.768 0.016
#> SRR1643224     3  0.4327     0.9861 0.216 0.000 0.768 0.016
#> SRR1643225     3  0.4327     0.9861 0.216 0.000 0.768 0.016
#> SRR1643226     3  0.4327     0.9861 0.216 0.000 0.768 0.016
#> SRR1643227     3  0.4086     0.9856 0.216 0.000 0.776 0.008
#> SRR1643228     3  0.4086     0.9856 0.216 0.000 0.776 0.008
#> SRR1643229     3  0.4086     0.9856 0.216 0.000 0.776 0.008
#> SRR1643230     3  0.4327     0.9861 0.216 0.000 0.768 0.016
#> SRR1643231     3  0.4212     0.9839 0.216 0.000 0.772 0.012
#> SRR1643232     3  0.4327     0.9861 0.216 0.000 0.768 0.016
#> SRR1643233     3  0.4728     0.9792 0.216 0.000 0.752 0.032
#> SRR1643234     3  0.4728     0.9792 0.216 0.000 0.752 0.032
#> SRR1643235     3  0.4327     0.9861 0.216 0.000 0.768 0.016
#> SRR1643236     3  0.4327     0.9861 0.216 0.000 0.768 0.016
#> SRR1643237     3  0.4327     0.9861 0.216 0.000 0.768 0.016
#> SRR1643238     3  0.4212     0.9865 0.216 0.000 0.772 0.012
#> SRR1643239     3  0.4212     0.9865 0.216 0.000 0.772 0.012
#> SRR1643240     3  0.4212     0.9865 0.216 0.000 0.772 0.012
#> SRR1643241     3  0.4212     0.9865 0.216 0.000 0.772 0.012
#> SRR1643242     3  0.4904     0.9760 0.216 0.000 0.744 0.040
#> SRR1643243     3  0.4781     0.9742 0.212 0.000 0.752 0.036
#> SRR1643245     3  0.4781     0.9742 0.212 0.000 0.752 0.036
#> SRR1643246     3  0.4781     0.9742 0.212 0.000 0.752 0.036
#> SRR1643247     3  0.4781     0.9742 0.212 0.000 0.752 0.036
#> SRR1643248     3  0.4086     0.9856 0.216 0.000 0.776 0.008
#> SRR1643249     1  0.7890    -0.0238 0.372 0.000 0.292 0.336
#> SRR1643250     1  0.3726     0.7304 0.788 0.000 0.000 0.212
#> SRR1643251     1  0.3726     0.7304 0.788 0.000 0.000 0.212
#> SRR1643252     1  0.3726     0.7304 0.788 0.000 0.000 0.212
#> SRR1643253     1  0.3726     0.7304 0.788 0.000 0.000 0.212
#> SRR1643254     1  0.3726     0.7304 0.788 0.000 0.000 0.212
#> SRR1643255     1  0.3726     0.7304 0.788 0.000 0.000 0.212
#> SRR1643256     1  0.3726     0.7304 0.788 0.000 0.000 0.212
#> SRR1643257     1  0.3726     0.7304 0.788 0.000 0.000 0.212
#> SRR1643258     1  0.3726     0.7304 0.788 0.000 0.000 0.212
#> SRR1643259     1  0.3726     0.7304 0.788 0.000 0.000 0.212
#> SRR1643260     1  0.3726     0.7304 0.788 0.000 0.000 0.212
#> SRR1643261     1  0.3726     0.7304 0.788 0.000 0.000 0.212
#> SRR1643262     1  0.3764     0.7298 0.784 0.000 0.000 0.216
#> SRR1643263     1  0.3764     0.7298 0.784 0.000 0.000 0.216
#> SRR1643264     1  0.3764     0.7298 0.784 0.000 0.000 0.216
#> SRR1643266     1  0.3764     0.7298 0.784 0.000 0.000 0.216
#> SRR1643267     1  0.3764     0.7298 0.784 0.000 0.000 0.216
#> SRR1643268     1  0.3764     0.7298 0.784 0.000 0.000 0.216
#> SRR1643269     1  0.3764     0.7298 0.784 0.000 0.000 0.216
#> SRR1643270     1  0.3764     0.7298 0.784 0.000 0.000 0.216
#> SRR1643271     1  0.3764     0.7298 0.784 0.000 0.000 0.216
#> SRR1643272     1  0.3764     0.7298 0.784 0.000 0.000 0.216
#> SRR1643273     1  0.2926     0.7342 0.896 0.000 0.048 0.056
#> SRR1643274     1  0.2926     0.7342 0.896 0.000 0.048 0.056
#> SRR1643275     1  0.2926     0.7342 0.896 0.000 0.048 0.056
#> SRR1643276     1  0.2926     0.7342 0.896 0.000 0.048 0.056
#> SRR1643277     1  0.2926     0.7342 0.896 0.000 0.048 0.056
#> SRR1643278     1  0.2926     0.7342 0.896 0.000 0.048 0.056
#> SRR1643279     1  0.2926     0.7342 0.896 0.000 0.048 0.056
#> SRR1643280     1  0.2926     0.7342 0.896 0.000 0.048 0.056
#> SRR1643281     1  0.2926     0.7342 0.896 0.000 0.048 0.056
#> SRR1643282     1  0.2926     0.7342 0.896 0.000 0.048 0.056
#> SRR1643283     1  0.2926     0.7342 0.896 0.000 0.048 0.056
#> SRR1643284     1  0.2926     0.7342 0.896 0.000 0.048 0.056
#> SRR1643285     1  0.2926     0.7342 0.896 0.000 0.048 0.056
#> SRR1643286     1  0.2926     0.7342 0.896 0.000 0.048 0.056
#> SRR1643287     1  0.4706     0.7076 0.748 0.000 0.028 0.224
#> SRR1643288     1  0.4706     0.7076 0.748 0.000 0.028 0.224
#> SRR1643289     1  0.4706     0.7076 0.748 0.000 0.028 0.224
#> SRR1643290     1  0.4706     0.7076 0.748 0.000 0.028 0.224
#> SRR1643291     1  0.4706     0.7076 0.748 0.000 0.028 0.224
#> SRR1643292     1  0.4706     0.7076 0.748 0.000 0.028 0.224
#> SRR1643293     1  0.4706     0.7076 0.748 0.000 0.028 0.224
#> SRR1643294     1  0.4706     0.7076 0.748 0.000 0.028 0.224
#> SRR1643295     1  0.4706     0.7076 0.748 0.000 0.028 0.224
#> SRR1643296     1  0.4706     0.7076 0.748 0.000 0.028 0.224
#> SRR1643297     1  0.4706     0.7076 0.748 0.000 0.028 0.224
#> SRR1643298     1  0.4706     0.7076 0.748 0.000 0.028 0.224
#> SRR1643299     1  0.4706     0.7076 0.748 0.000 0.028 0.224
#> SRR1643300     1  0.4706     0.7076 0.748 0.000 0.028 0.224
#> SRR1643301     1  0.0921     0.7404 0.972 0.000 0.028 0.000
#> SRR1643302     1  0.0921     0.7404 0.972 0.000 0.028 0.000
#> SRR1643303     1  0.0921     0.7404 0.972 0.000 0.028 0.000
#> SRR1643304     1  0.0921     0.7404 0.972 0.000 0.028 0.000
#> SRR1643305     1  0.0817     0.7415 0.976 0.000 0.024 0.000
#> SRR1643306     1  0.0921     0.7404 0.972 0.000 0.028 0.000
#> SRR1643307     1  0.0921     0.7404 0.972 0.000 0.028 0.000
#> SRR1643308     1  0.0817     0.7415 0.976 0.000 0.024 0.000
#> SRR1643309     1  0.0921     0.7404 0.972 0.000 0.028 0.000
#> SRR1643310     1  0.0817     0.7415 0.976 0.000 0.024 0.000
#> SRR1643311     1  0.0921     0.7404 0.972 0.000 0.028 0.000
#> SRR1643312     1  0.0921     0.7404 0.972 0.000 0.028 0.000
#> SRR1643313     1  0.0921     0.7404 0.972 0.000 0.028 0.000
#> SRR1643314     1  0.2401     0.7144 0.904 0.000 0.092 0.004
#> SRR1643315     1  0.2401     0.7144 0.904 0.000 0.092 0.004
#> SRR1643316     1  0.2401     0.7144 0.904 0.000 0.092 0.004
#> SRR1643317     1  0.2401     0.7144 0.904 0.000 0.092 0.004
#> SRR1643318     1  0.2401     0.7144 0.904 0.000 0.092 0.004
#> SRR1643319     1  0.2334     0.7162 0.908 0.000 0.088 0.004
#> SRR1643320     1  0.2401     0.7144 0.904 0.000 0.092 0.004
#> SRR1643321     1  0.2401     0.7144 0.904 0.000 0.092 0.004
#> SRR1643322     1  0.2401     0.7144 0.904 0.000 0.092 0.004
#> SRR1643323     1  0.2401     0.7144 0.904 0.000 0.092 0.004
#> SRR1643324     1  0.2401     0.7144 0.904 0.000 0.092 0.004
#> SRR1643325     1  0.2401     0.7144 0.904 0.000 0.092 0.004
#> SRR1643326     1  0.2401     0.7144 0.904 0.000 0.092 0.004
#> SRR1643327     1  0.2401     0.7144 0.904 0.000 0.092 0.004
#> SRR1643328     1  0.3271     0.6844 0.856 0.000 0.132 0.012
#> SRR1643329     1  0.3271     0.6844 0.856 0.000 0.132 0.012
#> SRR1643330     1  0.3271     0.6844 0.856 0.000 0.132 0.012
#> SRR1643331     1  0.3271     0.6844 0.856 0.000 0.132 0.012
#> SRR1643332     1  0.3271     0.6844 0.856 0.000 0.132 0.012
#> SRR1643333     1  0.3271     0.6844 0.856 0.000 0.132 0.012
#> SRR1643334     1  0.3217     0.6874 0.860 0.000 0.128 0.012
#> SRR1643335     1  0.3271     0.6844 0.856 0.000 0.132 0.012
#> SRR1643336     1  0.3271     0.6844 0.856 0.000 0.132 0.012
#> SRR1643337     1  0.3271     0.6844 0.856 0.000 0.132 0.012
#> SRR1643338     1  0.3271     0.6844 0.856 0.000 0.132 0.012
#> SRR1643339     1  0.3271     0.6844 0.856 0.000 0.132 0.012
#> SRR1643340     1  0.3271     0.6844 0.856 0.000 0.132 0.012
#> SRR1643341     1  0.3271     0.6844 0.856 0.000 0.132 0.012
#> SRR1643342     1  0.3271     0.6844 0.856 0.000 0.132 0.012
#> SRR1643343     1  0.4800     0.7121 0.760 0.000 0.044 0.196
#> SRR1643344     1  0.4800     0.7121 0.760 0.000 0.044 0.196
#> SRR1643345     1  0.4800     0.7121 0.760 0.000 0.044 0.196
#> SRR1643346     1  0.4800     0.7121 0.760 0.000 0.044 0.196
#> SRR1643347     1  0.4800     0.7121 0.760 0.000 0.044 0.196
#> SRR1643348     1  0.4800     0.7121 0.760 0.000 0.044 0.196
#> SRR1643349     1  0.4800     0.7121 0.760 0.000 0.044 0.196
#> SRR1643350     1  0.4800     0.7121 0.760 0.000 0.044 0.196
#> SRR1643351     1  0.4800     0.7121 0.760 0.000 0.044 0.196
#> SRR1643352     1  0.4800     0.7121 0.760 0.000 0.044 0.196
#> SRR1643353     1  0.4800     0.7121 0.760 0.000 0.044 0.196
#> SRR1643354     1  0.4800     0.7121 0.760 0.000 0.044 0.196
#> SRR1643355     1  0.4800     0.7121 0.760 0.000 0.044 0.196
#> SRR1643356     1  0.4800     0.7121 0.760 0.000 0.044 0.196
#> SRR1643357     1  0.4800     0.7121 0.760 0.000 0.044 0.196
#> SRR1643358     1  0.3837     0.7273 0.776 0.000 0.000 0.224
#> SRR1643359     1  0.3837     0.7273 0.776 0.000 0.000 0.224
#> SRR1643360     1  0.3837     0.7273 0.776 0.000 0.000 0.224
#> SRR1643361     1  0.3837     0.7273 0.776 0.000 0.000 0.224
#> SRR1643362     1  0.3837     0.7273 0.776 0.000 0.000 0.224
#> SRR1643363     1  0.3837     0.7273 0.776 0.000 0.000 0.224
#> SRR1643364     1  0.3837     0.7273 0.776 0.000 0.000 0.224
#> SRR1643365     1  0.3837     0.7273 0.776 0.000 0.000 0.224
#> SRR1643366     1  0.3837     0.7273 0.776 0.000 0.000 0.224
#> SRR1643367     1  0.3837     0.7273 0.776 0.000 0.000 0.224
#> SRR1643368     1  0.3837     0.7273 0.776 0.000 0.000 0.224
#> SRR1643369     1  0.3837     0.7273 0.776 0.000 0.000 0.224
#> SRR1643370     1  0.3837     0.7273 0.776 0.000 0.000 0.224
#> SRR1643371     1  0.3837     0.7273 0.776 0.000 0.000 0.224
#> SRR1643372     1  0.3837     0.7273 0.776 0.000 0.000 0.224
#> SRR1643373     1  0.3873     0.7262 0.772 0.000 0.000 0.228
#> SRR1643374     1  0.3873     0.7262 0.772 0.000 0.000 0.228
#> SRR1643375     1  0.3873     0.7262 0.772 0.000 0.000 0.228
#> SRR1643376     1  0.3873     0.7262 0.772 0.000 0.000 0.228
#> SRR1643377     1  0.3873     0.7262 0.772 0.000 0.000 0.228
#> SRR1643378     1  0.3873     0.7262 0.772 0.000 0.000 0.228
#> SRR1643379     1  0.3873     0.7262 0.772 0.000 0.000 0.228
#> SRR1643380     1  0.3873     0.7262 0.772 0.000 0.000 0.228
#> SRR1643381     1  0.3873     0.7262 0.772 0.000 0.000 0.228
#> SRR1643382     1  0.3873     0.7262 0.772 0.000 0.000 0.228
#> SRR1643383     1  0.3873     0.7262 0.772 0.000 0.000 0.228
#> SRR1643384     1  0.3873     0.7262 0.772 0.000 0.000 0.228
#> SRR1643385     1  0.3873     0.7262 0.772 0.000 0.000 0.228
#> SRR1643386     1  0.3873     0.7262 0.772 0.000 0.000 0.228
#> SRR1643387     1  0.3873     0.7262 0.772 0.000 0.000 0.228
#> SRR1643388     1  0.3873     0.7262 0.772 0.000 0.000 0.228
#> SRR1643389     1  0.3873     0.7262 0.772 0.000 0.000 0.228
#> SRR1643390     1  0.3390     0.6835 0.852 0.000 0.132 0.016
#> SRR1643391     1  0.3390     0.6835 0.852 0.000 0.132 0.016
#> SRR1643392     1  0.3390     0.6835 0.852 0.000 0.132 0.016
#> SRR1643393     1  0.3390     0.6835 0.852 0.000 0.132 0.016
#> SRR1643394     1  0.3390     0.6835 0.852 0.000 0.132 0.016
#> SRR1643395     1  0.3390     0.6835 0.852 0.000 0.132 0.016
#> SRR1643396     1  0.3390     0.6835 0.852 0.000 0.132 0.016
#> SRR1643397     1  0.3390     0.6835 0.852 0.000 0.132 0.016
#> SRR1643398     1  0.3390     0.6835 0.852 0.000 0.132 0.016
#> SRR1643399     1  0.3390     0.6835 0.852 0.000 0.132 0.016
#> SRR1643400     1  0.3390     0.6835 0.852 0.000 0.132 0.016
#> SRR1643401     1  0.3390     0.6835 0.852 0.000 0.132 0.016
#> SRR1643402     1  0.3390     0.6835 0.852 0.000 0.132 0.016
#> SRR1643403     1  0.3390     0.6835 0.852 0.000 0.132 0.016
#> SRR1643404     1  0.3390     0.6835 0.852 0.000 0.132 0.016
#> SRR1643405     1  0.4100     0.6685 0.824 0.000 0.128 0.048
#> SRR1643406     1  0.4100     0.6685 0.824 0.000 0.128 0.048
#> SRR1643407     1  0.4100     0.6685 0.824 0.000 0.128 0.048
#> SRR1643408     1  0.4100     0.6685 0.824 0.000 0.128 0.048
#> SRR1643409     1  0.4100     0.6685 0.824 0.000 0.128 0.048
#> SRR1643410     1  0.4100     0.6685 0.824 0.000 0.128 0.048
#> SRR1643411     1  0.4100     0.6685 0.824 0.000 0.128 0.048
#> SRR1643412     1  0.4100     0.6685 0.824 0.000 0.128 0.048
#> SRR1643413     1  0.4100     0.6685 0.824 0.000 0.128 0.048
#> SRR1643414     1  0.4100     0.6685 0.824 0.000 0.128 0.048
#> SRR1643415     1  0.4100     0.6685 0.824 0.000 0.128 0.048
#> SRR1643416     1  0.4100     0.6685 0.824 0.000 0.128 0.048
#> SRR1643417     1  0.4100     0.6685 0.824 0.000 0.128 0.048
#> SRR1643418     1  0.5040     0.6250 0.628 0.000 0.008 0.364
#> SRR1643419     1  0.5040     0.6250 0.628 0.000 0.008 0.364
#> SRR1643420     1  0.5040     0.6250 0.628 0.000 0.008 0.364
#> SRR1643421     1  0.5040     0.6250 0.628 0.000 0.008 0.364
#> SRR1643422     1  0.5040     0.6250 0.628 0.000 0.008 0.364
#> SRR1643423     1  0.5040     0.6250 0.628 0.000 0.008 0.364
#> SRR1643424     1  0.5040     0.6250 0.628 0.000 0.008 0.364
#> SRR1643425     1  0.5040     0.6250 0.628 0.000 0.008 0.364
#> SRR1643426     1  0.5040     0.6250 0.628 0.000 0.008 0.364
#> SRR1643427     1  0.5040     0.6250 0.628 0.000 0.008 0.364
#> SRR1643428     1  0.5040     0.6250 0.628 0.000 0.008 0.364
#> SRR1643429     1  0.5040     0.6250 0.628 0.000 0.008 0.364
#> SRR1643430     1  0.4837     0.6364 0.648 0.000 0.004 0.348
#> SRR1643431     1  0.4837     0.6364 0.648 0.000 0.004 0.348
#> SRR1643432     1  0.4837     0.6364 0.648 0.000 0.004 0.348
#> SRR1643433     1  0.4837     0.6364 0.648 0.000 0.004 0.348
#> SRR1643434     1  0.4837     0.6364 0.648 0.000 0.004 0.348
#> SRR1643435     1  0.4837     0.6364 0.648 0.000 0.004 0.348
#> SRR1643436     1  0.4837     0.6364 0.648 0.000 0.004 0.348
#> SRR1643437     1  0.4837     0.6364 0.648 0.000 0.004 0.348
#> SRR1643438     1  0.4837     0.6364 0.648 0.000 0.004 0.348
#> SRR1643439     1  0.4837     0.6364 0.648 0.000 0.004 0.348
#> SRR1643440     1  0.4837     0.6364 0.648 0.000 0.004 0.348
#> SRR1643441     1  0.4837     0.6364 0.648 0.000 0.004 0.348
#> SRR1643442     1  0.4837     0.6364 0.648 0.000 0.004 0.348
#> SRR1643443     2  0.4856     0.8804 0.000 0.780 0.084 0.136
#> SRR1643444     2  0.4856     0.8804 0.000 0.780 0.084 0.136
#> SRR1643445     2  0.4856     0.8804 0.000 0.780 0.084 0.136
#> SRR1643446     2  0.4856     0.8804 0.000 0.780 0.084 0.136
#> SRR1643447     2  0.4856     0.8804 0.000 0.780 0.084 0.136
#> SRR1643448     2  0.4856     0.8804 0.000 0.780 0.084 0.136
#> SRR1643449     2  0.4856     0.8804 0.000 0.780 0.084 0.136
#> SRR1643450     2  0.4856     0.8804 0.000 0.780 0.084 0.136
#> SRR1643451     2  0.4856     0.8804 0.000 0.780 0.084 0.136
#> SRR1643452     2  0.4856     0.8804 0.000 0.780 0.084 0.136
#> SRR1643453     2  0.4856     0.8804 0.000 0.780 0.084 0.136
#> SRR1643454     2  0.4856     0.8804 0.000 0.780 0.084 0.136
#> SRR1643455     2  0.4856     0.8804 0.000 0.780 0.084 0.136
#> SRR1643456     2  0.0336     0.9013 0.000 0.992 0.000 0.008
#> SRR1643457     2  0.0336     0.9013 0.000 0.992 0.000 0.008
#> SRR1643458     2  0.0336     0.9013 0.000 0.992 0.000 0.008
#> SRR1643459     2  0.0336     0.9013 0.000 0.992 0.000 0.008
#> SRR1643460     2  0.0336     0.9013 0.000 0.992 0.000 0.008
#> SRR1643461     2  0.0336     0.9013 0.000 0.992 0.000 0.008
#> SRR1643462     2  0.0336     0.9013 0.000 0.992 0.000 0.008
#> SRR1643463     2  0.0336     0.9013 0.000 0.992 0.000 0.008
#> SRR1643464     2  0.0336     0.9013 0.000 0.992 0.000 0.008
#> SRR1643466     2  0.0336     0.9013 0.000 0.992 0.000 0.008
#> SRR1643467     2  0.0336     0.9013 0.000 0.992 0.000 0.008
#> SRR1643468     2  0.0937     0.9008 0.000 0.976 0.012 0.012
#> SRR1643469     2  0.0937     0.9008 0.000 0.976 0.012 0.012
#> SRR1643470     2  0.0937     0.9008 0.000 0.976 0.012 0.012
#> SRR1643471     2  0.0937     0.9008 0.000 0.976 0.012 0.012
#> SRR1643472     2  0.0937     0.9008 0.000 0.976 0.012 0.012
#> SRR1643473     2  0.0937     0.9008 0.000 0.976 0.012 0.012
#> SRR1643474     2  0.0937     0.9008 0.000 0.976 0.012 0.012
#> SRR1643475     2  0.0937     0.9008 0.000 0.976 0.012 0.012
#> SRR1643477     2  0.0937     0.9008 0.000 0.976 0.012 0.012
#> SRR1643478     2  0.0937     0.9008 0.000 0.976 0.012 0.012
#> SRR1643479     2  0.0937     0.9008 0.000 0.976 0.012 0.012
#> SRR1643480     2  0.0937     0.9008 0.000 0.976 0.012 0.012
#> SRR1643481     2  0.0592     0.9012 0.000 0.984 0.000 0.016
#> SRR1643482     2  0.0592     0.9012 0.000 0.984 0.000 0.016
#> SRR1643483     2  0.0592     0.9012 0.000 0.984 0.000 0.016
#> SRR1643484     2  0.0592     0.9012 0.000 0.984 0.000 0.016
#> SRR1643485     2  0.0592     0.9012 0.000 0.984 0.000 0.016
#> SRR1643486     2  0.0592     0.9012 0.000 0.984 0.000 0.016
#> SRR1643487     2  0.0592     0.9012 0.000 0.984 0.000 0.016
#> SRR1643488     2  0.0592     0.9012 0.000 0.984 0.000 0.016
#> SRR1643489     2  0.0592     0.9012 0.000 0.984 0.000 0.016
#> SRR1643490     2  0.0592     0.9012 0.000 0.984 0.000 0.016
#> SRR1643491     2  0.0592     0.9012 0.000 0.984 0.000 0.016
#> SRR1643492     2  0.0592     0.9012 0.000 0.984 0.000 0.016
#> SRR1643493     2  0.0592     0.9012 0.000 0.984 0.000 0.016
#> SRR1643494     2  0.0592     0.9012 0.000 0.984 0.000 0.016
#> SRR1643495     2  0.0592     0.9012 0.000 0.984 0.000 0.016
#> SRR1643496     2  0.0592     0.9012 0.000 0.984 0.000 0.016
#> SRR1643497     2  0.2411     0.8945 0.000 0.920 0.040 0.040
#> SRR1643498     2  0.2411     0.8945 0.000 0.920 0.040 0.040
#> SRR1643499     2  0.2411     0.8945 0.000 0.920 0.040 0.040
#> SRR1643500     2  0.2411     0.8945 0.000 0.920 0.040 0.040
#> SRR1643501     2  0.2411     0.8945 0.000 0.920 0.040 0.040
#> SRR1643502     2  0.2411     0.8945 0.000 0.920 0.040 0.040
#> SRR1643503     2  0.2411     0.8945 0.000 0.920 0.040 0.040
#> SRR1643504     2  0.2411     0.8945 0.000 0.920 0.040 0.040
#> SRR1643505     2  0.3542     0.8946 0.000 0.864 0.060 0.076
#> SRR1643506     2  0.2411     0.8945 0.000 0.920 0.040 0.040
#> SRR1643507     2  0.2411     0.8945 0.000 0.920 0.040 0.040
#> SRR1643508     2  0.2411     0.8945 0.000 0.920 0.040 0.040
#> SRR1643509     2  0.2411     0.8945 0.000 0.920 0.040 0.040
#> SRR1643510     2  0.2411     0.8945 0.000 0.920 0.040 0.040
#> SRR1643511     2  0.2411     0.8945 0.000 0.920 0.040 0.040
#> SRR1643512     2  0.2411     0.8945 0.000 0.920 0.040 0.040
#> SRR1643513     2  0.2411     0.8945 0.000 0.920 0.040 0.040
#> SRR1643531     2  0.4724     0.8785 0.000 0.788 0.076 0.136
#> SRR1643532     2  0.4724     0.8785 0.000 0.788 0.076 0.136
#> SRR1643533     2  0.4724     0.8785 0.000 0.788 0.076 0.136
#> SRR1643534     2  0.4724     0.8785 0.000 0.788 0.076 0.136
#> SRR1643535     2  0.4724     0.8785 0.000 0.788 0.076 0.136
#> SRR1643536     2  0.4724     0.8785 0.000 0.788 0.076 0.136
#> SRR1643537     2  0.4724     0.8785 0.000 0.788 0.076 0.136
#> SRR1643538     2  0.4724     0.8785 0.000 0.788 0.076 0.136
#> SRR1643539     2  0.4724     0.8785 0.000 0.788 0.076 0.136
#> SRR1643540     2  0.4724     0.8785 0.000 0.788 0.076 0.136
#> SRR1643541     2  0.4724     0.8785 0.000 0.788 0.076 0.136
#> SRR1643542     2  0.4724     0.8785 0.000 0.788 0.076 0.136
#> SRR1643543     2  0.4724     0.8785 0.000 0.788 0.076 0.136
#> SRR1643544     2  0.4724     0.8785 0.000 0.788 0.076 0.136
#> SRR1643514     2  0.4867     0.8537 0.000 0.736 0.032 0.232
#> SRR1643515     2  0.4867     0.8537 0.000 0.736 0.032 0.232
#> SRR1643516     2  0.4867     0.8537 0.000 0.736 0.032 0.232
#> SRR1643517     2  0.4867     0.8537 0.000 0.736 0.032 0.232
#> SRR1643518     2  0.4867     0.8537 0.000 0.736 0.032 0.232
#> SRR1643519     2  0.4867     0.8537 0.000 0.736 0.032 0.232
#> SRR1643520     2  0.4867     0.8537 0.000 0.736 0.032 0.232
#> SRR1643521     2  0.4867     0.8537 0.000 0.736 0.032 0.232
#> SRR1643522     2  0.4867     0.8537 0.000 0.736 0.032 0.232
#> SRR1643523     2  0.4867     0.8537 0.000 0.736 0.032 0.232
#> SRR1643524     2  0.4867     0.8537 0.000 0.736 0.032 0.232
#> SRR1643525     2  0.4867     0.8537 0.000 0.736 0.032 0.232
#> SRR1643526     2  0.4867     0.8537 0.000 0.736 0.032 0.232
#> SRR1643527     2  0.4867     0.8537 0.000 0.736 0.032 0.232
#> SRR1643528     2  0.4867     0.8537 0.000 0.736 0.032 0.232
#> SRR1643529     2  0.4867     0.8537 0.000 0.736 0.032 0.232
#> SRR1643530     2  0.4867     0.8537 0.000 0.736 0.032 0.232
#> SRR1643545     2  0.2563     0.8985 0.000 0.908 0.020 0.072
#> SRR1643546     2  0.2563     0.8985 0.000 0.908 0.020 0.072
#> SRR1643547     2  0.2563     0.8985 0.000 0.908 0.020 0.072
#> SRR1643548     2  0.2563     0.8985 0.000 0.908 0.020 0.072
#> SRR1643549     2  0.2563     0.8985 0.000 0.908 0.020 0.072
#> SRR1643550     2  0.2563     0.8985 0.000 0.908 0.020 0.072
#> SRR1643551     2  0.2563     0.8985 0.000 0.908 0.020 0.072
#> SRR1643552     2  0.2563     0.8985 0.000 0.908 0.020 0.072
#> SRR1643553     2  0.2563     0.8985 0.000 0.908 0.020 0.072
#> SRR1643554     2  0.2563     0.8985 0.000 0.908 0.020 0.072
#> SRR1643555     2  0.2563     0.8985 0.000 0.908 0.020 0.072
#> SRR1643556     2  0.2563     0.8985 0.000 0.908 0.020 0.072
#> SRR1643558     2  0.2563     0.8985 0.000 0.908 0.020 0.072
#> SRR1643559     2  0.4867     0.8543 0.000 0.736 0.032 0.232
#> SRR1643560     2  0.4867     0.8543 0.000 0.736 0.032 0.232
#> SRR1643561     2  0.4867     0.8543 0.000 0.736 0.032 0.232
#> SRR1643562     2  0.4867     0.8543 0.000 0.736 0.032 0.232
#> SRR1643563     2  0.4867     0.8543 0.000 0.736 0.032 0.232
#> SRR1643564     2  0.4922     0.8537 0.000 0.736 0.036 0.228
#> SRR1643565     2  0.4867     0.8543 0.000 0.736 0.032 0.232
#> SRR1643566     2  0.4867     0.8543 0.000 0.736 0.032 0.232
#> SRR1643567     2  0.4867     0.8543 0.000 0.736 0.032 0.232
#> SRR1643568     2  0.4867     0.8543 0.000 0.736 0.032 0.232
#> SRR1643569     2  0.4867     0.8543 0.000 0.736 0.032 0.232
#> SRR1643570     2  0.4867     0.8543 0.000 0.736 0.032 0.232
#> SRR1643571     2  0.4867     0.8543 0.000 0.736 0.032 0.232
#> SRR1643572     2  0.4867     0.8543 0.000 0.736 0.032 0.232

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1    p2    p3    p4    p5
#> SRR1643167     1  0.6724    -0.2707 0.532 0.000 0.024 0.172 0.272
#> SRR1643168     1  0.6724    -0.2707 0.532 0.000 0.024 0.172 0.272
#> SRR1643169     1  0.6724    -0.2707 0.532 0.000 0.024 0.172 0.272
#> SRR1643170     1  0.6724    -0.2707 0.532 0.000 0.024 0.172 0.272
#> SRR1643171     1  0.6640    -0.2168 0.560 0.000 0.036 0.136 0.268
#> SRR1643172     1  0.6640    -0.2168 0.560 0.000 0.036 0.136 0.268
#> SRR1643173     1  0.6640    -0.2168 0.560 0.000 0.036 0.136 0.268
#> SRR1643174     1  0.6640    -0.2168 0.560 0.000 0.036 0.136 0.268
#> SRR1643175     1  0.5340     0.1899 0.716 0.000 0.028 0.100 0.156
#> SRR1643176     1  0.5340     0.1899 0.716 0.000 0.028 0.100 0.156
#> SRR1643177     1  0.5340     0.1899 0.716 0.000 0.028 0.100 0.156
#> SRR1643178     1  0.5340     0.1899 0.716 0.000 0.028 0.100 0.156
#> SRR1643180     1  0.6724    -0.2707 0.532 0.000 0.024 0.172 0.272
#> SRR1643181     1  0.6724    -0.2707 0.532 0.000 0.024 0.172 0.272
#> SRR1643182     1  0.6724    -0.2707 0.532 0.000 0.024 0.172 0.272
#> SRR1643183     1  0.6723    -0.2277 0.552 0.000 0.036 0.148 0.264
#> SRR1643184     1  0.6723    -0.2277 0.552 0.000 0.036 0.148 0.264
#> SRR1643185     1  0.6723    -0.2277 0.552 0.000 0.036 0.148 0.264
#> SRR1643186     1  0.6723    -0.2277 0.552 0.000 0.036 0.148 0.264
#> SRR1643187     1  0.6908    -0.2854 0.520 0.000 0.032 0.180 0.268
#> SRR1643188     1  0.6908    -0.2854 0.520 0.000 0.032 0.180 0.268
#> SRR1643189     1  0.6908    -0.2854 0.520 0.000 0.032 0.180 0.268
#> SRR1643190     1  0.6908    -0.2854 0.520 0.000 0.032 0.180 0.268
#> SRR1643191     1  0.6836    -0.2717 0.532 0.000 0.032 0.172 0.264
#> SRR1643192     1  0.6836    -0.2717 0.532 0.000 0.032 0.172 0.264
#> SRR1643193     1  0.6752    -0.2705 0.528 0.000 0.024 0.176 0.272
#> SRR1643194     1  0.6752    -0.2705 0.528 0.000 0.024 0.176 0.272
#> SRR1643195     1  0.7315    -0.4151 0.364 0.000 0.024 0.344 0.268
#> SRR1643196     1  0.7315    -0.4151 0.364 0.000 0.024 0.344 0.268
#> SRR1643197     1  0.4693     0.2726 0.768 0.000 0.024 0.076 0.132
#> SRR1643198     1  0.4693     0.2726 0.768 0.000 0.024 0.076 0.132
#> SRR1643199     1  0.6724    -0.2707 0.532 0.000 0.024 0.172 0.272
#> SRR1643200     1  0.6724    -0.2707 0.532 0.000 0.024 0.172 0.272
#> SRR1643201     1  0.6909    -0.3062 0.504 0.000 0.024 0.204 0.268
#> SRR1643202     1  0.6909    -0.3062 0.504 0.000 0.024 0.204 0.268
#> SRR1643203     1  0.6808    -0.2660 0.536 0.000 0.032 0.168 0.264
#> SRR1643204     1  0.6808    -0.2660 0.536 0.000 0.032 0.168 0.264
#> SRR1643205     3  0.2690     0.9666 0.156 0.000 0.844 0.000 0.000
#> SRR1643206     3  0.2690     0.9666 0.156 0.000 0.844 0.000 0.000
#> SRR1643207     3  0.2690     0.9666 0.156 0.000 0.844 0.000 0.000
#> SRR1643208     3  0.2690     0.9666 0.156 0.000 0.844 0.000 0.000
#> SRR1643209     3  0.4415     0.9533 0.156 0.000 0.776 0.020 0.048
#> SRR1643210     3  0.4415     0.9533 0.156 0.000 0.776 0.020 0.048
#> SRR1643211     3  0.2929     0.9647 0.152 0.000 0.840 0.008 0.000
#> SRR1643212     3  0.2929     0.9647 0.152 0.000 0.840 0.008 0.000
#> SRR1643213     3  0.2929     0.9647 0.152 0.000 0.840 0.008 0.000
#> SRR1643214     3  0.2929     0.9647 0.152 0.000 0.840 0.008 0.000
#> SRR1643215     3  0.4375     0.9520 0.152 0.000 0.780 0.020 0.048
#> SRR1643216     3  0.4375     0.9520 0.152 0.000 0.780 0.020 0.048
#> SRR1643217     3  0.4375     0.9520 0.152 0.000 0.780 0.020 0.048
#> SRR1643218     3  0.4375     0.9520 0.152 0.000 0.780 0.020 0.048
#> SRR1643219     3  0.4375     0.9520 0.152 0.000 0.780 0.020 0.048
#> SRR1643220     3  0.4375     0.9520 0.152 0.000 0.780 0.020 0.048
#> SRR1643221     3  0.3252     0.9664 0.156 0.000 0.828 0.008 0.008
#> SRR1643222     3  0.3252     0.9664 0.156 0.000 0.828 0.008 0.008
#> SRR1643223     3  0.2690     0.9666 0.156 0.000 0.844 0.000 0.000
#> SRR1643224     3  0.2690     0.9666 0.156 0.000 0.844 0.000 0.000
#> SRR1643225     3  0.2690     0.9666 0.156 0.000 0.844 0.000 0.000
#> SRR1643226     3  0.2690     0.9666 0.156 0.000 0.844 0.000 0.000
#> SRR1643227     3  0.3648     0.9643 0.156 0.000 0.812 0.008 0.024
#> SRR1643228     3  0.3648     0.9643 0.156 0.000 0.812 0.008 0.024
#> SRR1643229     3  0.3648     0.9643 0.156 0.000 0.812 0.008 0.024
#> SRR1643230     3  0.2848     0.9664 0.156 0.000 0.840 0.004 0.000
#> SRR1643231     3  0.3984     0.9483 0.152 0.000 0.800 0.032 0.016
#> SRR1643232     3  0.2848     0.9660 0.156 0.000 0.840 0.004 0.000
#> SRR1643233     3  0.4415     0.9533 0.156 0.000 0.776 0.020 0.048
#> SRR1643234     3  0.4415     0.9533 0.156 0.000 0.776 0.020 0.048
#> SRR1643235     3  0.2848     0.9660 0.156 0.000 0.840 0.004 0.000
#> SRR1643236     3  0.2806     0.9645 0.152 0.000 0.844 0.004 0.000
#> SRR1643237     3  0.2806     0.9645 0.152 0.000 0.844 0.004 0.000
#> SRR1643238     3  0.2971     0.9661 0.156 0.000 0.836 0.008 0.000
#> SRR1643239     3  0.2971     0.9661 0.156 0.000 0.836 0.008 0.000
#> SRR1643240     3  0.2971     0.9661 0.156 0.000 0.836 0.008 0.000
#> SRR1643241     3  0.2971     0.9661 0.156 0.000 0.836 0.008 0.000
#> SRR1643242     3  0.4890     0.9106 0.136 0.000 0.760 0.048 0.056
#> SRR1643243     3  0.4615     0.9386 0.144 0.000 0.772 0.032 0.052
#> SRR1643245     3  0.4615     0.9386 0.144 0.000 0.772 0.032 0.052
#> SRR1643246     3  0.4615     0.9386 0.144 0.000 0.772 0.032 0.052
#> SRR1643247     3  0.4615     0.9386 0.144 0.000 0.772 0.032 0.052
#> SRR1643248     3  0.3648     0.9643 0.156 0.000 0.812 0.008 0.024
#> SRR1643249     5  0.8518     0.0000 0.248 0.000 0.184 0.264 0.304
#> SRR1643250     1  0.4451    -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643251     1  0.4451    -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643252     1  0.4451    -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643253     1  0.4451    -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643254     1  0.4451    -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643255     1  0.4451    -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643256     1  0.4451    -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643257     1  0.4451    -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643258     1  0.4451    -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643259     1  0.4451    -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643260     1  0.4451    -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643261     1  0.4451    -0.3963 0.504 0.000 0.000 0.492 0.004
#> SRR1643262     1  0.4449    -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643263     1  0.4449    -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643264     1  0.4449    -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643266     1  0.4449    -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643267     1  0.4449    -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643268     1  0.4449    -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643269     1  0.4449    -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643270     1  0.4449    -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643271     1  0.4449    -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643272     1  0.4449    -0.3751 0.512 0.000 0.004 0.484 0.000
#> SRR1643273     1  0.3622     0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643274     1  0.3622     0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643275     1  0.3622     0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643276     1  0.3622     0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643277     1  0.3622     0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643278     1  0.3622     0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643279     1  0.3622     0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643280     1  0.3622     0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643281     1  0.3622     0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643282     1  0.3622     0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643283     1  0.3622     0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643284     1  0.3622     0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643285     1  0.3622     0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643286     1  0.3622     0.4402 0.832 0.000 0.004 0.096 0.068
#> SRR1643287     1  0.5975    -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643288     1  0.5975    -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643289     1  0.5975    -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643290     1  0.5975    -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643291     1  0.5975    -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643292     1  0.5975    -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643293     1  0.5975    -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643294     1  0.5975    -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643295     1  0.5975    -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643296     1  0.5975    -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643297     1  0.5975    -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643298     1  0.5975    -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643299     1  0.5975    -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643300     1  0.5975    -0.0299 0.564 0.000 0.012 0.332 0.092
#> SRR1643301     1  0.1845     0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643302     1  0.1845     0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643303     1  0.1845     0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643304     1  0.1845     0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643305     1  0.1845     0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643306     1  0.1845     0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643307     1  0.1845     0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643308     1  0.1845     0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643309     1  0.1845     0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643310     1  0.1845     0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643311     1  0.1845     0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643312     1  0.1845     0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643313     1  0.1845     0.4800 0.928 0.000 0.000 0.056 0.016
#> SRR1643314     1  0.1356     0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643315     1  0.1356     0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643316     1  0.1356     0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643317     1  0.1356     0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643318     1  0.1356     0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643319     1  0.1356     0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643320     1  0.1356     0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643321     1  0.1356     0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643322     1  0.1356     0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643323     1  0.1356     0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643324     1  0.1356     0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643325     1  0.1356     0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643326     1  0.1356     0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643327     1  0.1356     0.5066 0.956 0.000 0.028 0.004 0.012
#> SRR1643328     1  0.2095     0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643329     1  0.2095     0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643330     1  0.2095     0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643331     1  0.2095     0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643332     1  0.2095     0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643333     1  0.2095     0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643334     1  0.2095     0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643335     1  0.2095     0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643336     1  0.2095     0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643337     1  0.2095     0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643338     1  0.2095     0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643339     1  0.2095     0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643340     1  0.2095     0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643341     1  0.2095     0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643342     1  0.2095     0.4949 0.920 0.000 0.060 0.008 0.012
#> SRR1643343     1  0.5617     0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643344     1  0.5617     0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643345     1  0.5617     0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643346     1  0.5617     0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643347     1  0.5617     0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643348     1  0.5617     0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643349     1  0.5617     0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643350     1  0.5617     0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643351     1  0.5617     0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643352     1  0.5617     0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643353     1  0.5617     0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643354     1  0.5617     0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643355     1  0.5617     0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643356     1  0.5617     0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643357     1  0.5617     0.1963 0.636 0.000 0.016 0.272 0.076
#> SRR1643358     1  0.4451    -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643359     1  0.4451    -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643360     1  0.4451    -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643361     1  0.4451    -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643362     1  0.4451    -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643363     1  0.4451    -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643364     1  0.4451    -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643365     1  0.4451    -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643366     1  0.4451    -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643367     1  0.4451    -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643368     1  0.4451    -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643369     1  0.4451    -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643370     1  0.4451    -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643371     1  0.4451    -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643372     1  0.4451    -0.3884 0.504 0.000 0.000 0.492 0.004
#> SRR1643373     1  0.4594    -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643374     1  0.4594    -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643375     1  0.4594    -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643376     1  0.4594    -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643377     1  0.4594    -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643378     1  0.4594    -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643379     1  0.4594    -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643380     1  0.4594    -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643381     4  0.4596     0.3833 0.492 0.000 0.004 0.500 0.004
#> SRR1643382     1  0.4594    -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643383     1  0.4594    -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643384     1  0.4594    -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643385     1  0.4594    -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643386     1  0.4594    -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643387     1  0.4594    -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643388     1  0.4594    -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643389     1  0.4594    -0.3658 0.508 0.000 0.004 0.484 0.004
#> SRR1643390     1  0.1914     0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643391     1  0.1914     0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643392     1  0.1914     0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643393     1  0.1914     0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643394     1  0.1914     0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643395     1  0.1914     0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643396     1  0.1914     0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643397     1  0.1914     0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643398     1  0.1914     0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643399     1  0.1914     0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643400     1  0.1914     0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643401     1  0.1914     0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643402     1  0.1914     0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643403     1  0.1914     0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643404     1  0.1914     0.4963 0.924 0.000 0.060 0.000 0.016
#> SRR1643405     1  0.2859     0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643406     1  0.2859     0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643407     1  0.2859     0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643408     1  0.2859     0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643409     1  0.2859     0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643410     1  0.2859     0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643411     1  0.2859     0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643412     1  0.2859     0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643413     1  0.2859     0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643414     1  0.2859     0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643415     1  0.2859     0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643416     1  0.2859     0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643417     1  0.2859     0.4741 0.888 0.000 0.060 0.036 0.016
#> SRR1643418     4  0.5921     0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643419     4  0.5921     0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643420     4  0.5921     0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643421     4  0.5921     0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643422     4  0.5921     0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643423     4  0.5921     0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643424     4  0.5921     0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643425     4  0.5921     0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643426     4  0.5921     0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643427     4  0.5921     0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643428     4  0.5921     0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643429     4  0.5921     0.9581 0.344 0.000 0.012 0.560 0.084
#> SRR1643430     4  0.5697     0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643431     4  0.5697     0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643432     4  0.5697     0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643433     4  0.5697     0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643434     4  0.5697     0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643435     4  0.5697     0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643436     4  0.5697     0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643437     4  0.5697     0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643438     4  0.5697     0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643439     4  0.5697     0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643440     4  0.5697     0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643441     4  0.5697     0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643442     4  0.5697     0.9606 0.352 0.000 0.008 0.568 0.072
#> SRR1643443     2  0.5331     0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643444     2  0.5331     0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643445     2  0.5331     0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643446     2  0.5331     0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643447     2  0.5331     0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643448     2  0.5331     0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643449     2  0.5331     0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643450     2  0.5331     0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643451     2  0.5331     0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643452     2  0.5331     0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643453     2  0.5331     0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643454     2  0.5331     0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643455     2  0.5331     0.8061 0.000 0.684 0.040 0.040 0.236
#> SRR1643456     2  0.0290     0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643457     2  0.0290     0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643458     2  0.0290     0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643459     2  0.0290     0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643460     2  0.0290     0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643461     2  0.0290     0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643462     2  0.0290     0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643463     2  0.0290     0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643464     2  0.0290     0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643466     2  0.0290     0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643467     2  0.0290     0.8448 0.000 0.992 0.008 0.000 0.000
#> SRR1643468     2  0.0579     0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643469     2  0.0579     0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643470     2  0.0579     0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643471     2  0.0579     0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643472     2  0.0579     0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643473     2  0.0579     0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643474     2  0.0579     0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643475     2  0.0579     0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643477     2  0.0579     0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643478     2  0.0579     0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643479     2  0.0579     0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643480     2  0.0579     0.8441 0.000 0.984 0.008 0.008 0.000
#> SRR1643481     2  0.0162     0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643482     2  0.0162     0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643483     2  0.0162     0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643484     2  0.0162     0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643485     2  0.0162     0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643486     2  0.0162     0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643487     2  0.0162     0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643488     2  0.0162     0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643489     2  0.0162     0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643490     2  0.0162     0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643491     2  0.0162     0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643492     2  0.0162     0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643493     2  0.0162     0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643494     2  0.0162     0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643495     2  0.0162     0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643496     2  0.0162     0.8443 0.000 0.996 0.004 0.000 0.000
#> SRR1643497     2  0.2728     0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643498     2  0.2728     0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643499     2  0.2728     0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643500     2  0.2728     0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643501     2  0.2728     0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643502     2  0.2728     0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643503     2  0.2728     0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643504     2  0.2728     0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643505     2  0.4062     0.8364 0.000 0.820 0.032 0.056 0.092
#> SRR1643506     2  0.2728     0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643507     2  0.2728     0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643508     2  0.2728     0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643509     2  0.2728     0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643510     2  0.2728     0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643511     2  0.2728     0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643512     2  0.2728     0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643513     2  0.2728     0.8348 0.000 0.896 0.016 0.040 0.048
#> SRR1643531     2  0.5519     0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643532     2  0.5519     0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643533     2  0.5519     0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643534     2  0.5519     0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643535     2  0.5519     0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643536     2  0.5519     0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643537     2  0.5519     0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643538     2  0.5519     0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643539     2  0.5519     0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643540     2  0.5519     0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643541     2  0.5519     0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643542     2  0.5519     0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643543     2  0.5519     0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643544     2  0.5519     0.7921 0.000 0.684 0.032 0.072 0.212
#> SRR1643514     2  0.4530     0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643515     2  0.4530     0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643516     2  0.4530     0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643517     2  0.4530     0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643518     2  0.4530     0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643519     2  0.4530     0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643520     2  0.4530     0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643521     2  0.4530     0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643522     2  0.4530     0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643523     2  0.4530     0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643524     2  0.4530     0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643525     2  0.4530     0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643526     2  0.4530     0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643527     2  0.4530     0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643528     2  0.4530     0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643529     2  0.4530     0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643530     2  0.4530     0.7685 0.000 0.612 0.008 0.004 0.376
#> SRR1643545     2  0.2411     0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643546     2  0.2411     0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643547     2  0.2411     0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643548     2  0.2411     0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643549     2  0.2411     0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643550     2  0.2411     0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643551     2  0.2411     0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643552     2  0.2411     0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643553     2  0.2411     0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643554     2  0.2411     0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643555     2  0.2411     0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643556     2  0.2411     0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643558     2  0.2411     0.8419 0.000 0.884 0.008 0.000 0.108
#> SRR1643559     2  0.4150     0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643560     2  0.4150     0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643561     2  0.4150     0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643562     2  0.4150     0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643563     2  0.4150     0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643564     2  0.4150     0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643565     2  0.4150     0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643566     2  0.4150     0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643567     2  0.4150     0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643568     2  0.4150     0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643569     2  0.4150     0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643570     2  0.4150     0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643571     2  0.4150     0.7698 0.000 0.612 0.000 0.000 0.388
#> SRR1643572     2  0.4150     0.7698 0.000 0.612 0.000 0.000 0.388

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2    p3    p4    p5 p6
#> SRR1643167     5  0.4387      0.939 0.404 0.000 0.004 0.020 0.572 NA
#> SRR1643168     5  0.4387      0.939 0.404 0.000 0.004 0.020 0.572 NA
#> SRR1643169     5  0.4387      0.939 0.404 0.000 0.004 0.020 0.572 NA
#> SRR1643170     5  0.4387      0.939 0.404 0.000 0.004 0.020 0.572 NA
#> SRR1643171     5  0.4488      0.916 0.432 0.000 0.004 0.016 0.544 NA
#> SRR1643172     5  0.4488      0.916 0.432 0.000 0.004 0.016 0.544 NA
#> SRR1643173     5  0.4488      0.916 0.432 0.000 0.004 0.016 0.544 NA
#> SRR1643174     5  0.4488      0.916 0.432 0.000 0.004 0.016 0.544 NA
#> SRR1643175     1  0.4995     -0.235 0.620 0.000 0.016 0.024 0.320 NA
#> SRR1643176     1  0.4995     -0.235 0.620 0.000 0.016 0.024 0.320 NA
#> SRR1643177     1  0.4995     -0.235 0.620 0.000 0.016 0.024 0.320 NA
#> SRR1643178     1  0.4995     -0.235 0.620 0.000 0.016 0.024 0.320 NA
#> SRR1643180     5  0.4520      0.939 0.404 0.000 0.004 0.020 0.568 NA
#> SRR1643181     5  0.4520      0.939 0.404 0.000 0.004 0.020 0.568 NA
#> SRR1643182     5  0.4520      0.939 0.404 0.000 0.004 0.020 0.568 NA
#> SRR1643183     5  0.4483      0.922 0.428 0.000 0.004 0.016 0.548 NA
#> SRR1643184     5  0.4483      0.922 0.428 0.000 0.004 0.016 0.548 NA
#> SRR1643185     5  0.4483      0.922 0.428 0.000 0.004 0.016 0.548 NA
#> SRR1643186     5  0.4483      0.922 0.428 0.000 0.004 0.016 0.548 NA
#> SRR1643187     5  0.4784      0.915 0.372 0.000 0.012 0.028 0.584 NA
#> SRR1643188     5  0.4784      0.915 0.372 0.000 0.012 0.028 0.584 NA
#> SRR1643189     5  0.4784      0.915 0.372 0.000 0.012 0.028 0.584 NA
#> SRR1643190     5  0.4784      0.915 0.372 0.000 0.012 0.028 0.584 NA
#> SRR1643191     5  0.4536      0.937 0.408 0.000 0.004 0.028 0.560 NA
#> SRR1643192     5  0.4536      0.937 0.408 0.000 0.004 0.028 0.560 NA
#> SRR1643193     5  0.4452      0.937 0.400 0.000 0.004 0.024 0.572 NA
#> SRR1643194     5  0.4452      0.937 0.400 0.000 0.004 0.024 0.572 NA
#> SRR1643195     5  0.5315      0.760 0.304 0.000 0.000 0.132 0.564 NA
#> SRR1643196     5  0.5315      0.760 0.304 0.000 0.000 0.132 0.564 NA
#> SRR1643197     1  0.4162      0.114 0.720 0.000 0.008 0.024 0.240 NA
#> SRR1643198     1  0.4162      0.114 0.720 0.000 0.008 0.024 0.240 NA
#> SRR1643199     5  0.4387      0.939 0.404 0.000 0.004 0.020 0.572 NA
#> SRR1643200     5  0.4387      0.939 0.404 0.000 0.004 0.020 0.572 NA
#> SRR1643201     5  0.4649      0.906 0.380 0.000 0.000 0.048 0.572 NA
#> SRR1643202     5  0.4649      0.906 0.380 0.000 0.000 0.048 0.572 NA
#> SRR1643203     5  0.4688      0.930 0.392 0.000 0.012 0.020 0.572 NA
#> SRR1643204     5  0.4688      0.930 0.392 0.000 0.012 0.020 0.572 NA
#> SRR1643205     3  0.2416      0.967 0.156 0.000 0.844 0.000 0.000 NA
#> SRR1643206     3  0.2416      0.967 0.156 0.000 0.844 0.000 0.000 NA
#> SRR1643207     3  0.2416      0.967 0.156 0.000 0.844 0.000 0.000 NA
#> SRR1643208     3  0.2416      0.967 0.156 0.000 0.844 0.000 0.000 NA
#> SRR1643209     3  0.4272      0.949 0.144 0.000 0.768 0.004 0.056 NA
#> SRR1643210     3  0.4272      0.949 0.144 0.000 0.768 0.004 0.056 NA
#> SRR1643211     3  0.2558      0.966 0.156 0.000 0.840 0.000 0.000 NA
#> SRR1643212     3  0.2558      0.966 0.156 0.000 0.840 0.000 0.000 NA
#> SRR1643213     3  0.2558      0.966 0.156 0.000 0.840 0.000 0.000 NA
#> SRR1643214     3  0.2558      0.966 0.156 0.000 0.840 0.000 0.000 NA
#> SRR1643215     3  0.4272      0.949 0.144 0.000 0.768 0.004 0.056 NA
#> SRR1643216     3  0.4272      0.949 0.144 0.000 0.768 0.004 0.056 NA
#> SRR1643217     3  0.4272      0.949 0.144 0.000 0.768 0.004 0.056 NA
#> SRR1643218     3  0.4272      0.949 0.144 0.000 0.768 0.004 0.056 NA
#> SRR1643219     3  0.4272      0.949 0.144 0.000 0.768 0.004 0.056 NA
#> SRR1643220     3  0.4272      0.949 0.144 0.000 0.768 0.004 0.056 NA
#> SRR1643221     3  0.3196      0.966 0.156 0.000 0.816 0.000 0.020 NA
#> SRR1643222     3  0.3196      0.966 0.156 0.000 0.816 0.000 0.020 NA
#> SRR1643223     3  0.2558      0.966 0.156 0.000 0.840 0.000 0.004 NA
#> SRR1643224     3  0.2558      0.966 0.156 0.000 0.840 0.000 0.004 NA
#> SRR1643225     3  0.2558      0.966 0.156 0.000 0.840 0.000 0.004 NA
#> SRR1643226     3  0.2558      0.966 0.156 0.000 0.840 0.000 0.004 NA
#> SRR1643227     3  0.3277      0.965 0.156 0.000 0.812 0.000 0.024 NA
#> SRR1643228     3  0.3277      0.965 0.156 0.000 0.812 0.000 0.024 NA
#> SRR1643229     3  0.3239      0.965 0.152 0.000 0.816 0.000 0.024 NA
#> SRR1643230     3  0.2810      0.967 0.156 0.000 0.832 0.000 0.008 NA
#> SRR1643231     3  0.4164      0.943 0.152 0.000 0.772 0.012 0.052 NA
#> SRR1643232     3  0.2558      0.966 0.156 0.000 0.840 0.000 0.000 NA
#> SRR1643233     3  0.4329      0.949 0.144 0.000 0.764 0.004 0.060 NA
#> SRR1643234     3  0.4329      0.949 0.144 0.000 0.764 0.004 0.060 NA
#> SRR1643235     3  0.2416      0.967 0.156 0.000 0.844 0.000 0.000 NA
#> SRR1643236     3  0.2558      0.966 0.156 0.000 0.840 0.000 0.000 NA
#> SRR1643237     3  0.2558      0.966 0.156 0.000 0.840 0.000 0.000 NA
#> SRR1643238     3  0.2378      0.967 0.152 0.000 0.848 0.000 0.000 NA
#> SRR1643239     3  0.2378      0.967 0.152 0.000 0.848 0.000 0.000 NA
#> SRR1643240     3  0.2378      0.967 0.152 0.000 0.848 0.000 0.000 NA
#> SRR1643241     3  0.2378      0.967 0.152 0.000 0.848 0.000 0.000 NA
#> SRR1643242     3  0.5138      0.913 0.140 0.000 0.708 0.016 0.112 NA
#> SRR1643243     3  0.4361      0.942 0.136 0.000 0.768 0.012 0.064 NA
#> SRR1643245     3  0.4361      0.942 0.136 0.000 0.768 0.012 0.064 NA
#> SRR1643246     3  0.4361      0.942 0.136 0.000 0.768 0.012 0.064 NA
#> SRR1643247     3  0.4361      0.942 0.136 0.000 0.768 0.012 0.064 NA
#> SRR1643248     3  0.3239      0.965 0.152 0.000 0.816 0.000 0.024 NA
#> SRR1643249     5  0.5678      0.617 0.184 0.000 0.076 0.068 0.660 NA
#> SRR1643250     4  0.4165      0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643251     4  0.4165      0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643252     4  0.4165      0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643253     4  0.4165      0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643254     4  0.4165      0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643255     4  0.4165      0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643256     4  0.4165      0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643257     4  0.4165      0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643258     4  0.4165      0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643259     4  0.4165      0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643260     4  0.4165      0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643261     4  0.4165      0.746 0.452 0.000 0.000 0.536 0.012 NA
#> SRR1643262     4  0.4141      0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643263     4  0.4141      0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643264     4  0.4141      0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643266     4  0.4141      0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643267     4  0.4141      0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643268     4  0.4141      0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643269     4  0.4141      0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643270     4  0.4141      0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643271     4  0.4141      0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643272     4  0.4141      0.756 0.432 0.000 0.000 0.556 0.012 NA
#> SRR1643273     1  0.4720      0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643274     1  0.4720      0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643275     1  0.4720      0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643276     1  0.4720      0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643277     1  0.4720      0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643278     1  0.4720      0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643279     1  0.4720      0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643280     1  0.4720      0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643281     1  0.4720      0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643282     1  0.4720      0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643283     1  0.4720      0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643284     1  0.4720      0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643285     1  0.4720      0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643286     1  0.4720      0.579 0.744 0.000 0.004 0.096 0.040 NA
#> SRR1643287     1  0.6995      0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643288     1  0.6995      0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643289     1  0.6995      0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643290     1  0.6995      0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643291     1  0.6995      0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643292     1  0.6995      0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643293     1  0.6995      0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643294     1  0.6995      0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643295     1  0.6995      0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643296     1  0.6995      0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643297     1  0.6995      0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643298     1  0.6995      0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643299     1  0.6995      0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643300     1  0.6995      0.142 0.428 0.000 0.020 0.336 0.048 NA
#> SRR1643301     1  0.1719      0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643302     1  0.1719      0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643303     1  0.1719      0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643304     1  0.1719      0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643305     1  0.1719      0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643306     1  0.1719      0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643307     1  0.1719      0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643308     1  0.1719      0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643309     1  0.1719      0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643310     1  0.1719      0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643311     1  0.1719      0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643312     1  0.1719      0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643313     1  0.1719      0.634 0.928 0.000 0.000 0.056 0.008 NA
#> SRR1643314     1  0.1026      0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643315     1  0.1026      0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643316     1  0.1026      0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643317     1  0.1026      0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643318     1  0.1026      0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643319     1  0.1026      0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643320     1  0.1026      0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643321     1  0.1026      0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643322     1  0.1026      0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643323     1  0.1026      0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643324     1  0.1026      0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643325     1  0.1026      0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643326     1  0.1026      0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643327     1  0.1026      0.650 0.968 0.000 0.008 0.012 0.004 NA
#> SRR1643328     1  0.1296      0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643329     1  0.1296      0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643330     1  0.1296      0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643331     1  0.1296      0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643332     1  0.1296      0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643333     1  0.1296      0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643334     1  0.1340      0.650 0.948 0.000 0.040 0.000 0.008 NA
#> SRR1643335     1  0.1296      0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643336     1  0.1296      0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643337     1  0.1296      0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643338     1  0.1296      0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643339     1  0.1296      0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643340     1  0.1296      0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643341     1  0.1296      0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643342     1  0.1296      0.651 0.948 0.000 0.044 0.000 0.004 NA
#> SRR1643343     1  0.7075      0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643344     1  0.7075      0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643345     1  0.7075      0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643346     1  0.7075      0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643347     1  0.7075      0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643348     1  0.7075      0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643349     1  0.7075      0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643350     1  0.7075      0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643351     1  0.7075      0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643352     1  0.7075      0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643353     1  0.7075      0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643354     1  0.7075      0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643355     1  0.7075      0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643356     1  0.7075      0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643357     1  0.7075      0.274 0.496 0.000 0.032 0.264 0.068 NA
#> SRR1643358     4  0.4385      0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643359     4  0.4385      0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643360     4  0.4385      0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643361     4  0.4385      0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643362     4  0.4385      0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643363     4  0.4385      0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643364     4  0.4385      0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643365     4  0.4385      0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643366     4  0.4385      0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643367     4  0.4385      0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643368     4  0.4385      0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643369     4  0.4385      0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643370     4  0.4385      0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643371     4  0.4385      0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643372     4  0.4385      0.756 0.440 0.000 0.000 0.540 0.012 NA
#> SRR1643373     4  0.4344      0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643374     4  0.4344      0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643375     4  0.4344      0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643376     4  0.4344      0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643377     4  0.4344      0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643378     4  0.4344      0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643379     4  0.4344      0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643380     4  0.4344      0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643381     4  0.4344      0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643382     4  0.4344      0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643383     4  0.4344      0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643384     4  0.4344      0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643385     4  0.4344      0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643386     4  0.4344      0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643387     4  0.4344      0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643388     4  0.4344      0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643389     4  0.4344      0.754 0.412 0.000 0.000 0.568 0.008 NA
#> SRR1643390     1  0.2825      0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643391     1  0.2825      0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643392     1  0.2825      0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643393     1  0.2825      0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643394     1  0.2825      0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643395     1  0.2825      0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643396     1  0.2699      0.648 0.884 0.000 0.048 0.000 0.040 NA
#> SRR1643397     1  0.2825      0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643398     1  0.2825      0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643399     1  0.2825      0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643400     1  0.2825      0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643401     1  0.2825      0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643402     1  0.2825      0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643403     1  0.2825      0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643404     1  0.2825      0.644 0.876 0.000 0.056 0.000 0.040 NA
#> SRR1643405     1  0.3889      0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643406     1  0.3889      0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643407     1  0.3889      0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643408     1  0.3889      0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643409     1  0.3889      0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643410     1  0.3889      0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643411     1  0.3889      0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643412     1  0.3889      0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643413     1  0.3889      0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643414     1  0.3889      0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643415     1  0.3889      0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643416     1  0.3889      0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643417     1  0.3889      0.635 0.824 0.000 0.060 0.020 0.040 NA
#> SRR1643418     4  0.6325      0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643419     4  0.6325      0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643420     4  0.6325      0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643421     4  0.6325      0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643422     4  0.6325      0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643423     4  0.6325      0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643424     4  0.6325      0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643425     4  0.6325      0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643426     4  0.6325      0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643427     4  0.6325      0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643428     4  0.6325      0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643429     4  0.6325      0.570 0.200 0.000 0.012 0.596 0.096 NA
#> SRR1643430     4  0.5983      0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643431     4  0.5983      0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643432     4  0.5983      0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643433     4  0.5983      0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643434     4  0.5983      0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643435     4  0.5983      0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643436     4  0.5983      0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643437     4  0.5983      0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643438     4  0.5983      0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643439     4  0.5983      0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643440     4  0.5983      0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643441     4  0.5983      0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643442     4  0.5983      0.585 0.212 0.000 0.012 0.620 0.060 NA
#> SRR1643443     2  0.5769      0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643444     2  0.5769      0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643445     2  0.5769      0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643446     2  0.5769      0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643447     2  0.5769      0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643448     2  0.5769      0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643449     2  0.5769      0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643450     2  0.5769      0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643451     2  0.5769      0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643452     2  0.5769      0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643453     2  0.5769      0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643454     2  0.5769      0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643455     2  0.5769      0.761 0.000 0.624 0.012 0.044 0.084 NA
#> SRR1643456     2  0.0436      0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643457     2  0.0436      0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643458     2  0.0436      0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643459     2  0.0436      0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643460     2  0.0436      0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643461     2  0.0436      0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643462     2  0.0436      0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643463     2  0.0436      0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643464     2  0.0436      0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643466     2  0.0436      0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643467     2  0.0436      0.808 0.000 0.988 0.004 0.004 0.004 NA
#> SRR1643468     2  0.0922      0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643469     2  0.0922      0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643470     2  0.0922      0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643471     2  0.0922      0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643472     2  0.0922      0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643473     2  0.0922      0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643474     2  0.0922      0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643475     2  0.0922      0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643477     2  0.0922      0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643478     2  0.0922      0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643479     2  0.0922      0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643480     2  0.0922      0.808 0.000 0.968 0.004 0.024 0.004 NA
#> SRR1643481     2  0.0862      0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643482     2  0.0862      0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643483     2  0.0862      0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643484     2  0.0862      0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643485     2  0.0862      0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643486     2  0.0862      0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643487     2  0.0862      0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643488     2  0.0862      0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643489     2  0.0862      0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643490     2  0.0862      0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643491     2  0.0862      0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643492     2  0.0862      0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643493     2  0.0862      0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643494     2  0.0862      0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643495     2  0.0862      0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643496     2  0.0862      0.807 0.000 0.972 0.016 0.004 0.000 NA
#> SRR1643497     2  0.3406      0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643498     2  0.3406      0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643499     2  0.3406      0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643500     2  0.3406      0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643501     2  0.3406      0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643502     2  0.3406      0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643503     2  0.3406      0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643504     2  0.3406      0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643505     2  0.5281      0.789 0.000 0.724 0.032 0.052 0.084 NA
#> SRR1643506     2  0.3406      0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643507     2  0.3406      0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643508     2  0.3406      0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643509     2  0.3406      0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643510     2  0.3406      0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643511     2  0.3406      0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643512     2  0.3406      0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643513     2  0.3406      0.790 0.000 0.832 0.000 0.024 0.100 NA
#> SRR1643531     2  0.6059      0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643532     2  0.6059      0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643533     2  0.6059      0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643534     2  0.6059      0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643535     2  0.6059      0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643536     2  0.6059      0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643537     2  0.6059      0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643538     2  0.6059      0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643539     2  0.6059      0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643540     2  0.6059      0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643541     2  0.6059      0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643542     2  0.6059      0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643543     2  0.6059      0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643544     2  0.6059      0.731 0.000 0.580 0.040 0.052 0.040 NA
#> SRR1643514     2  0.4303      0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643515     2  0.4303      0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643516     2  0.4303      0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643517     2  0.4303      0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643518     2  0.4303      0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643519     2  0.4303      0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643520     2  0.4303      0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643521     2  0.4303      0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643522     2  0.4303      0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643523     2  0.4303      0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643524     2  0.4303      0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643525     2  0.4303      0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643526     2  0.4303      0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643527     2  0.4303      0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643528     2  0.4303      0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643529     2  0.4303      0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643530     2  0.4303      0.710 0.000 0.524 0.004 0.000 0.012 NA
#> SRR1643545     2  0.2712      0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643546     2  0.2712      0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643547     2  0.2712      0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643548     2  0.2712      0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643549     2  0.2712      0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643550     2  0.2854      0.802 0.000 0.860 0.004 0.016 0.012 NA
#> SRR1643551     2  0.2712      0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643552     2  0.2712      0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643553     2  0.2712      0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643554     2  0.2712      0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643555     2  0.2712      0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643556     2  0.2712      0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643558     2  0.2712      0.803 0.000 0.864 0.000 0.016 0.012 NA
#> SRR1643559     2  0.4258      0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643560     2  0.4258      0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643561     2  0.4258      0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643562     2  0.4258      0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643563     2  0.4258      0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643564     2  0.4331      0.708 0.000 0.516 0.000 0.000 0.020 NA
#> SRR1643565     2  0.4258      0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643566     2  0.4258      0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643567     2  0.4258      0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643568     2  0.4258      0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643569     2  0.4258      0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643570     2  0.4258      0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643571     2  0.4258      0.709 0.000 0.516 0.000 0.000 0.016 NA
#> SRR1643572     2  0.4258      0.709 0.000 0.516 0.000 0.000 0.016 NA

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-ATC-kmeans-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-ATC-kmeans-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-ATC-kmeans-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-ATC-kmeans-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-ATC-kmeans-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-ATC-kmeans-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-ATC-kmeans-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-ATC-kmeans-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-ATC-kmeans-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-ATC-kmeans-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-ATC-kmeans-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-ATC-kmeans-get-signatures-2

get_signatures(res, k = 4)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-ATC-kmeans-get-signatures-3

get_signatures(res, k = 5)

plot of chunk tab-ATC-kmeans-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-ATC-kmeans-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-ATC-kmeans-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-ATC-kmeans-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-ATC-kmeans-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)

plot of chunk tab-ATC-kmeans-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-ATC-kmeans-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk ATC-kmeans-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-ATC-kmeans-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-ATC-kmeans-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-ATC-kmeans-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-ATC-kmeans-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-ATC-kmeans-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk ATC-kmeans-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


ATC:skmeans**

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["ATC", "skmeans"]
# you can also extract it by
# res = res_list["ATC:skmeans"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'ATC' method.
#>   Subgroups are detected by 'skmeans' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 2.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk ATC-skmeans-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk ATC-skmeans-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000         0.4350 0.566   0.566
#> 3 3 0.797           0.949       0.949         0.3252 0.874   0.777
#> 4 4 0.768           0.820       0.887         0.1657 0.936   0.855
#> 5 5 0.774           0.846       0.855         0.0925 0.834   0.578
#> 6 6 0.811           0.825       0.818         0.0538 0.955   0.823

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 2

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1 p2    p3
#> SRR1643167     1  0.1964      0.918 0.944  0 0.056
#> SRR1643168     1  0.1964      0.918 0.944  0 0.056
#> SRR1643169     1  0.1964      0.918 0.944  0 0.056
#> SRR1643170     1  0.1964      0.918 0.944  0 0.056
#> SRR1643171     1  0.1964      0.918 0.944  0 0.056
#> SRR1643172     1  0.1964      0.918 0.944  0 0.056
#> SRR1643173     1  0.1964      0.918 0.944  0 0.056
#> SRR1643174     1  0.1964      0.918 0.944  0 0.056
#> SRR1643175     1  0.2066      0.917 0.940  0 0.060
#> SRR1643176     1  0.2066      0.917 0.940  0 0.060
#> SRR1643177     1  0.2066      0.917 0.940  0 0.060
#> SRR1643178     1  0.2066      0.917 0.940  0 0.060
#> SRR1643180     1  0.1964      0.918 0.944  0 0.056
#> SRR1643181     1  0.1964      0.918 0.944  0 0.056
#> SRR1643182     1  0.1964      0.918 0.944  0 0.056
#> SRR1643183     1  0.1964      0.918 0.944  0 0.056
#> SRR1643184     1  0.1964      0.918 0.944  0 0.056
#> SRR1643185     1  0.1964      0.918 0.944  0 0.056
#> SRR1643186     1  0.1964      0.918 0.944  0 0.056
#> SRR1643187     1  0.1289      0.924 0.968  0 0.032
#> SRR1643188     1  0.1289      0.924 0.968  0 0.032
#> SRR1643189     1  0.1289      0.924 0.968  0 0.032
#> SRR1643190     1  0.1289      0.924 0.968  0 0.032
#> SRR1643191     1  0.1964      0.918 0.944  0 0.056
#> SRR1643192     1  0.1964      0.918 0.944  0 0.056
#> SRR1643193     1  0.1860      0.920 0.948  0 0.052
#> SRR1643194     1  0.1860      0.920 0.948  0 0.052
#> SRR1643195     1  0.2711      0.908 0.912  0 0.088
#> SRR1643196     1  0.2711      0.908 0.912  0 0.088
#> SRR1643197     1  0.1964      0.918 0.944  0 0.056
#> SRR1643198     1  0.1964      0.918 0.944  0 0.056
#> SRR1643199     1  0.1964      0.918 0.944  0 0.056
#> SRR1643200     1  0.1964      0.918 0.944  0 0.056
#> SRR1643201     1  0.2066      0.920 0.940  0 0.060
#> SRR1643202     1  0.2066      0.920 0.940  0 0.060
#> SRR1643203     1  0.1964      0.918 0.944  0 0.056
#> SRR1643204     1  0.1964      0.918 0.944  0 0.056
#> SRR1643205     3  0.3116      1.000 0.108  0 0.892
#> SRR1643206     3  0.3116      1.000 0.108  0 0.892
#> SRR1643207     3  0.3116      1.000 0.108  0 0.892
#> SRR1643208     3  0.3116      1.000 0.108  0 0.892
#> SRR1643209     3  0.3116      1.000 0.108  0 0.892
#> SRR1643210     3  0.3116      1.000 0.108  0 0.892
#> SRR1643211     3  0.3116      1.000 0.108  0 0.892
#> SRR1643212     3  0.3116      1.000 0.108  0 0.892
#> SRR1643213     3  0.3116      1.000 0.108  0 0.892
#> SRR1643214     3  0.3116      1.000 0.108  0 0.892
#> SRR1643215     3  0.3116      1.000 0.108  0 0.892
#> SRR1643216     3  0.3116      1.000 0.108  0 0.892
#> SRR1643217     3  0.3116      1.000 0.108  0 0.892
#> SRR1643218     3  0.3116      1.000 0.108  0 0.892
#> SRR1643219     3  0.3116      1.000 0.108  0 0.892
#> SRR1643220     3  0.3116      1.000 0.108  0 0.892
#> SRR1643221     3  0.3116      1.000 0.108  0 0.892
#> SRR1643222     3  0.3116      1.000 0.108  0 0.892
#> SRR1643223     3  0.3116      1.000 0.108  0 0.892
#> SRR1643224     3  0.3116      1.000 0.108  0 0.892
#> SRR1643225     3  0.3116      1.000 0.108  0 0.892
#> SRR1643226     3  0.3116      1.000 0.108  0 0.892
#> SRR1643227     3  0.3116      1.000 0.108  0 0.892
#> SRR1643228     3  0.3116      1.000 0.108  0 0.892
#> SRR1643229     3  0.3116      1.000 0.108  0 0.892
#> SRR1643230     3  0.3116      1.000 0.108  0 0.892
#> SRR1643231     3  0.3116      1.000 0.108  0 0.892
#> SRR1643232     3  0.3116      1.000 0.108  0 0.892
#> SRR1643233     3  0.3116      1.000 0.108  0 0.892
#> SRR1643234     3  0.3116      1.000 0.108  0 0.892
#> SRR1643235     3  0.3116      1.000 0.108  0 0.892
#> SRR1643236     3  0.3116      1.000 0.108  0 0.892
#> SRR1643237     3  0.3116      1.000 0.108  0 0.892
#> SRR1643238     3  0.3116      1.000 0.108  0 0.892
#> SRR1643239     3  0.3116      1.000 0.108  0 0.892
#> SRR1643240     3  0.3116      1.000 0.108  0 0.892
#> SRR1643241     3  0.3116      1.000 0.108  0 0.892
#> SRR1643242     3  0.3116      1.000 0.108  0 0.892
#> SRR1643243     3  0.3116      1.000 0.108  0 0.892
#> SRR1643245     3  0.3116      1.000 0.108  0 0.892
#> SRR1643246     3  0.3116      1.000 0.108  0 0.892
#> SRR1643247     3  0.3116      1.000 0.108  0 0.892
#> SRR1643248     3  0.3116      1.000 0.108  0 0.892
#> SRR1643249     3  0.3116      1.000 0.108  0 0.892
#> SRR1643250     1  0.2711      0.908 0.912  0 0.088
#> SRR1643251     1  0.2711      0.908 0.912  0 0.088
#> SRR1643252     1  0.2711      0.908 0.912  0 0.088
#> SRR1643253     1  0.2711      0.908 0.912  0 0.088
#> SRR1643254     1  0.2711      0.908 0.912  0 0.088
#> SRR1643255     1  0.2711      0.908 0.912  0 0.088
#> SRR1643256     1  0.2711      0.908 0.912  0 0.088
#> SRR1643257     1  0.2711      0.908 0.912  0 0.088
#> SRR1643258     1  0.2711      0.908 0.912  0 0.088
#> SRR1643259     1  0.2711      0.908 0.912  0 0.088
#> SRR1643260     1  0.2711      0.908 0.912  0 0.088
#> SRR1643261     1  0.2711      0.908 0.912  0 0.088
#> SRR1643262     1  0.2711      0.908 0.912  0 0.088
#> SRR1643263     1  0.2711      0.908 0.912  0 0.088
#> SRR1643264     1  0.2711      0.908 0.912  0 0.088
#> SRR1643266     1  0.2711      0.908 0.912  0 0.088
#> SRR1643267     1  0.2711      0.908 0.912  0 0.088
#> SRR1643268     1  0.2711      0.908 0.912  0 0.088
#> SRR1643269     1  0.2711      0.908 0.912  0 0.088
#> SRR1643270     1  0.2711      0.908 0.912  0 0.088
#> SRR1643271     1  0.2711      0.908 0.912  0 0.088
#> SRR1643272     1  0.2711      0.908 0.912  0 0.088
#> SRR1643273     1  0.0592      0.925 0.988  0 0.012
#> SRR1643274     1  0.0592      0.925 0.988  0 0.012
#> SRR1643275     1  0.0592      0.925 0.988  0 0.012
#> SRR1643276     1  0.0592      0.925 0.988  0 0.012
#> SRR1643277     1  0.0592      0.925 0.988  0 0.012
#> SRR1643278     1  0.0592      0.925 0.988  0 0.012
#> SRR1643279     1  0.0592      0.925 0.988  0 0.012
#> SRR1643280     1  0.0592      0.925 0.988  0 0.012
#> SRR1643281     1  0.0592      0.925 0.988  0 0.012
#> SRR1643282     1  0.0592      0.925 0.988  0 0.012
#> SRR1643283     1  0.0592      0.925 0.988  0 0.012
#> SRR1643284     1  0.0592      0.925 0.988  0 0.012
#> SRR1643285     1  0.0592      0.925 0.988  0 0.012
#> SRR1643286     1  0.0592      0.925 0.988  0 0.012
#> SRR1643287     1  0.1753      0.921 0.952  0 0.048
#> SRR1643288     1  0.1753      0.921 0.952  0 0.048
#> SRR1643289     1  0.1753      0.921 0.952  0 0.048
#> SRR1643290     1  0.1753      0.921 0.952  0 0.048
#> SRR1643291     1  0.1753      0.921 0.952  0 0.048
#> SRR1643292     1  0.1753      0.921 0.952  0 0.048
#> SRR1643293     1  0.1753      0.921 0.952  0 0.048
#> SRR1643294     1  0.1753      0.921 0.952  0 0.048
#> SRR1643295     1  0.1753      0.921 0.952  0 0.048
#> SRR1643296     1  0.1753      0.921 0.952  0 0.048
#> SRR1643297     1  0.1753      0.921 0.952  0 0.048
#> SRR1643298     1  0.1753      0.921 0.952  0 0.048
#> SRR1643299     1  0.1753      0.921 0.952  0 0.048
#> SRR1643300     1  0.1753      0.921 0.952  0 0.048
#> SRR1643301     1  0.0000      0.926 1.000  0 0.000
#> SRR1643302     1  0.0000      0.926 1.000  0 0.000
#> SRR1643303     1  0.0000      0.926 1.000  0 0.000
#> SRR1643304     1  0.0000      0.926 1.000  0 0.000
#> SRR1643305     1  0.0000      0.926 1.000  0 0.000
#> SRR1643306     1  0.0000      0.926 1.000  0 0.000
#> SRR1643307     1  0.0000      0.926 1.000  0 0.000
#> SRR1643308     1  0.0000      0.926 1.000  0 0.000
#> SRR1643309     1  0.0000      0.926 1.000  0 0.000
#> SRR1643310     1  0.0000      0.926 1.000  0 0.000
#> SRR1643311     1  0.0000      0.926 1.000  0 0.000
#> SRR1643312     1  0.0000      0.926 1.000  0 0.000
#> SRR1643313     1  0.0000      0.926 1.000  0 0.000
#> SRR1643314     1  0.1753      0.921 0.952  0 0.048
#> SRR1643315     1  0.1753      0.921 0.952  0 0.048
#> SRR1643316     1  0.1753      0.921 0.952  0 0.048
#> SRR1643317     1  0.1753      0.921 0.952  0 0.048
#> SRR1643318     1  0.1753      0.921 0.952  0 0.048
#> SRR1643319     1  0.1753      0.921 0.952  0 0.048
#> SRR1643320     1  0.1753      0.921 0.952  0 0.048
#> SRR1643321     1  0.1753      0.921 0.952  0 0.048
#> SRR1643322     1  0.1753      0.921 0.952  0 0.048
#> SRR1643323     1  0.1753      0.921 0.952  0 0.048
#> SRR1643324     1  0.1753      0.921 0.952  0 0.048
#> SRR1643325     1  0.1753      0.921 0.952  0 0.048
#> SRR1643326     1  0.1753      0.921 0.952  0 0.048
#> SRR1643327     1  0.1753      0.921 0.952  0 0.048
#> SRR1643328     1  0.2537      0.906 0.920  0 0.080
#> SRR1643329     1  0.2537      0.906 0.920  0 0.080
#> SRR1643330     1  0.2537      0.906 0.920  0 0.080
#> SRR1643331     1  0.2537      0.906 0.920  0 0.080
#> SRR1643332     1  0.2537      0.906 0.920  0 0.080
#> SRR1643333     1  0.2537      0.906 0.920  0 0.080
#> SRR1643334     1  0.2537      0.906 0.920  0 0.080
#> SRR1643335     1  0.2537      0.906 0.920  0 0.080
#> SRR1643336     1  0.2537      0.906 0.920  0 0.080
#> SRR1643337     1  0.2537      0.906 0.920  0 0.080
#> SRR1643338     1  0.2537      0.906 0.920  0 0.080
#> SRR1643339     1  0.2537      0.906 0.920  0 0.080
#> SRR1643340     1  0.2537      0.906 0.920  0 0.080
#> SRR1643341     1  0.2537      0.906 0.920  0 0.080
#> SRR1643342     1  0.2537      0.906 0.920  0 0.080
#> SRR1643343     1  0.2165      0.914 0.936  0 0.064
#> SRR1643344     1  0.2165      0.914 0.936  0 0.064
#> SRR1643345     1  0.2165      0.914 0.936  0 0.064
#> SRR1643346     1  0.2165      0.914 0.936  0 0.064
#> SRR1643347     1  0.2165      0.914 0.936  0 0.064
#> SRR1643348     1  0.2165      0.914 0.936  0 0.064
#> SRR1643349     1  0.2165      0.914 0.936  0 0.064
#> SRR1643350     1  0.2165      0.914 0.936  0 0.064
#> SRR1643351     1  0.2165      0.914 0.936  0 0.064
#> SRR1643352     1  0.2165      0.914 0.936  0 0.064
#> SRR1643353     1  0.2165      0.914 0.936  0 0.064
#> SRR1643354     1  0.2165      0.914 0.936  0 0.064
#> SRR1643355     1  0.2165      0.914 0.936  0 0.064
#> SRR1643356     1  0.2165      0.914 0.936  0 0.064
#> SRR1643357     1  0.2165      0.914 0.936  0 0.064
#> SRR1643358     1  0.2711      0.908 0.912  0 0.088
#> SRR1643359     1  0.2711      0.908 0.912  0 0.088
#> SRR1643360     1  0.2711      0.908 0.912  0 0.088
#> SRR1643361     1  0.2711      0.908 0.912  0 0.088
#> SRR1643362     1  0.2711      0.908 0.912  0 0.088
#> SRR1643363     1  0.2711      0.908 0.912  0 0.088
#> SRR1643364     1  0.2711      0.908 0.912  0 0.088
#> SRR1643365     1  0.2711      0.908 0.912  0 0.088
#> SRR1643366     1  0.2711      0.908 0.912  0 0.088
#> SRR1643367     1  0.2711      0.908 0.912  0 0.088
#> SRR1643368     1  0.2711      0.908 0.912  0 0.088
#> SRR1643369     1  0.2711      0.908 0.912  0 0.088
#> SRR1643370     1  0.2711      0.908 0.912  0 0.088
#> SRR1643371     1  0.2711      0.908 0.912  0 0.088
#> SRR1643372     1  0.2711      0.908 0.912  0 0.088
#> SRR1643373     1  0.2711      0.908 0.912  0 0.088
#> SRR1643374     1  0.2711      0.908 0.912  0 0.088
#> SRR1643375     1  0.2711      0.908 0.912  0 0.088
#> SRR1643376     1  0.2711      0.908 0.912  0 0.088
#> SRR1643377     1  0.2711      0.908 0.912  0 0.088
#> SRR1643378     1  0.2711      0.908 0.912  0 0.088
#> SRR1643379     1  0.2711      0.908 0.912  0 0.088
#> SRR1643380     1  0.2711      0.908 0.912  0 0.088
#> SRR1643381     1  0.2711      0.908 0.912  0 0.088
#> SRR1643382     1  0.2711      0.908 0.912  0 0.088
#> SRR1643383     1  0.2711      0.908 0.912  0 0.088
#> SRR1643384     1  0.2711      0.908 0.912  0 0.088
#> SRR1643385     1  0.2711      0.908 0.912  0 0.088
#> SRR1643386     1  0.2711      0.908 0.912  0 0.088
#> SRR1643387     1  0.2711      0.908 0.912  0 0.088
#> SRR1643388     1  0.2711      0.908 0.912  0 0.088
#> SRR1643389     1  0.2711      0.908 0.912  0 0.088
#> SRR1643390     1  0.2537      0.906 0.920  0 0.080
#> SRR1643391     1  0.2537      0.906 0.920  0 0.080
#> SRR1643392     1  0.2537      0.906 0.920  0 0.080
#> SRR1643393     1  0.2537      0.906 0.920  0 0.080
#> SRR1643394     1  0.2537      0.906 0.920  0 0.080
#> SRR1643395     1  0.2537      0.906 0.920  0 0.080
#> SRR1643396     1  0.2537      0.906 0.920  0 0.080
#> SRR1643397     1  0.2537      0.906 0.920  0 0.080
#> SRR1643398     1  0.2537      0.906 0.920  0 0.080
#> SRR1643399     1  0.2537      0.906 0.920  0 0.080
#> SRR1643400     1  0.2537      0.906 0.920  0 0.080
#> SRR1643401     1  0.2537      0.906 0.920  0 0.080
#> SRR1643402     1  0.2537      0.906 0.920  0 0.080
#> SRR1643403     1  0.2537      0.906 0.920  0 0.080
#> SRR1643404     1  0.2537      0.906 0.920  0 0.080
#> SRR1643405     1  0.3116      0.886 0.892  0 0.108
#> SRR1643406     1  0.3116      0.886 0.892  0 0.108
#> SRR1643407     1  0.3116      0.886 0.892  0 0.108
#> SRR1643408     1  0.3116      0.886 0.892  0 0.108
#> SRR1643409     1  0.3116      0.886 0.892  0 0.108
#> SRR1643410     1  0.3116      0.886 0.892  0 0.108
#> SRR1643411     1  0.3116      0.886 0.892  0 0.108
#> SRR1643412     1  0.3116      0.886 0.892  0 0.108
#> SRR1643413     1  0.3116      0.886 0.892  0 0.108
#> SRR1643414     1  0.3116      0.886 0.892  0 0.108
#> SRR1643415     1  0.3116      0.886 0.892  0 0.108
#> SRR1643416     1  0.3116      0.886 0.892  0 0.108
#> SRR1643417     1  0.3116      0.886 0.892  0 0.108
#> SRR1643418     1  0.3116      0.896 0.892  0 0.108
#> SRR1643419     1  0.3116      0.896 0.892  0 0.108
#> SRR1643420     1  0.3116      0.896 0.892  0 0.108
#> SRR1643421     1  0.3116      0.896 0.892  0 0.108
#> SRR1643422     1  0.3116      0.896 0.892  0 0.108
#> SRR1643423     1  0.3116      0.896 0.892  0 0.108
#> SRR1643424     1  0.3116      0.896 0.892  0 0.108
#> SRR1643425     1  0.3116      0.896 0.892  0 0.108
#> SRR1643426     1  0.3116      0.896 0.892  0 0.108
#> SRR1643427     1  0.3116      0.896 0.892  0 0.108
#> SRR1643428     1  0.3116      0.896 0.892  0 0.108
#> SRR1643429     1  0.3116      0.896 0.892  0 0.108
#> SRR1643430     1  0.3116      0.896 0.892  0 0.108
#> SRR1643431     1  0.3116      0.896 0.892  0 0.108
#> SRR1643432     1  0.3116      0.896 0.892  0 0.108
#> SRR1643433     1  0.3116      0.896 0.892  0 0.108
#> SRR1643434     1  0.3116      0.896 0.892  0 0.108
#> SRR1643435     1  0.3116      0.896 0.892  0 0.108
#> SRR1643436     1  0.3116      0.896 0.892  0 0.108
#> SRR1643437     1  0.3116      0.896 0.892  0 0.108
#> SRR1643438     1  0.3116      0.896 0.892  0 0.108
#> SRR1643439     1  0.3116      0.896 0.892  0 0.108
#> SRR1643440     1  0.3116      0.896 0.892  0 0.108
#> SRR1643441     1  0.3116      0.896 0.892  0 0.108
#> SRR1643442     1  0.3116      0.896 0.892  0 0.108
#> SRR1643443     2  0.0000      1.000 0.000  1 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1 0.000
#> SRR1643505     2  0.0000      1.000 0.000  1 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1 0.000

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1    p2    p3    p4
#> SRR1643167     1  0.3934      0.717 0.836 0.000 0.048 0.116
#> SRR1643168     1  0.3934      0.717 0.836 0.000 0.048 0.116
#> SRR1643169     1  0.3934      0.717 0.836 0.000 0.048 0.116
#> SRR1643170     1  0.3934      0.717 0.836 0.000 0.048 0.116
#> SRR1643171     1  0.3877      0.720 0.840 0.000 0.048 0.112
#> SRR1643172     1  0.3877      0.720 0.840 0.000 0.048 0.112
#> SRR1643173     1  0.3877      0.720 0.840 0.000 0.048 0.112
#> SRR1643174     1  0.3877      0.720 0.840 0.000 0.048 0.112
#> SRR1643175     1  0.2915      0.748 0.892 0.000 0.028 0.080
#> SRR1643176     1  0.2915      0.748 0.892 0.000 0.028 0.080
#> SRR1643177     1  0.2915      0.748 0.892 0.000 0.028 0.080
#> SRR1643178     1  0.2915      0.748 0.892 0.000 0.028 0.080
#> SRR1643180     1  0.3934      0.717 0.836 0.000 0.048 0.116
#> SRR1643181     1  0.3934      0.717 0.836 0.000 0.048 0.116
#> SRR1643182     1  0.3934      0.717 0.836 0.000 0.048 0.116
#> SRR1643183     1  0.3877      0.720 0.840 0.000 0.048 0.112
#> SRR1643184     1  0.3877      0.720 0.840 0.000 0.048 0.112
#> SRR1643185     1  0.3877      0.720 0.840 0.000 0.048 0.112
#> SRR1643186     1  0.3877      0.720 0.840 0.000 0.048 0.112
#> SRR1643187     1  0.3787      0.715 0.840 0.000 0.036 0.124
#> SRR1643188     1  0.3787      0.715 0.840 0.000 0.036 0.124
#> SRR1643189     1  0.3787      0.715 0.840 0.000 0.036 0.124
#> SRR1643190     1  0.3787      0.715 0.840 0.000 0.036 0.124
#> SRR1643191     1  0.3934      0.717 0.836 0.000 0.048 0.116
#> SRR1643192     1  0.3934      0.717 0.836 0.000 0.048 0.116
#> SRR1643193     1  0.3934      0.717 0.836 0.000 0.048 0.116
#> SRR1643194     1  0.3934      0.717 0.836 0.000 0.048 0.116
#> SRR1643195     1  0.5228      0.557 0.664 0.000 0.024 0.312
#> SRR1643196     1  0.5228      0.557 0.664 0.000 0.024 0.312
#> SRR1643197     1  0.2908      0.749 0.896 0.000 0.040 0.064
#> SRR1643198     1  0.2908      0.749 0.896 0.000 0.040 0.064
#> SRR1643199     1  0.3934      0.717 0.836 0.000 0.048 0.116
#> SRR1643200     1  0.3934      0.717 0.836 0.000 0.048 0.116
#> SRR1643201     1  0.3842      0.717 0.836 0.000 0.036 0.128
#> SRR1643202     1  0.3842      0.717 0.836 0.000 0.036 0.128
#> SRR1643203     1  0.3764      0.717 0.844 0.000 0.040 0.116
#> SRR1643204     1  0.3764      0.717 0.844 0.000 0.040 0.116
#> SRR1643205     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643206     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643207     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643208     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643209     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643210     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643211     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643212     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643213     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643214     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643215     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643216     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643217     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643218     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643219     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643220     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643221     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643222     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643223     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643224     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643225     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643226     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643227     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643228     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643229     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643230     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643231     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643232     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643233     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643234     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643235     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643236     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643237     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643238     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643239     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643240     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643241     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643242     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643243     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643245     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643246     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643247     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643248     3  0.1022      0.997 0.032 0.000 0.968 0.000
#> SRR1643249     3  0.2676      0.873 0.012 0.000 0.896 0.092
#> SRR1643250     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643251     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643252     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643253     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643254     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643255     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643256     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643257     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643258     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643259     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643260     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643261     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643262     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643263     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643264     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643266     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643267     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643268     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643269     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643270     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643271     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643272     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643273     1  0.1211      0.776 0.960 0.000 0.000 0.040
#> SRR1643274     1  0.1211      0.776 0.960 0.000 0.000 0.040
#> SRR1643275     1  0.1211      0.776 0.960 0.000 0.000 0.040
#> SRR1643276     1  0.1211      0.776 0.960 0.000 0.000 0.040
#> SRR1643277     1  0.1211      0.776 0.960 0.000 0.000 0.040
#> SRR1643278     1  0.1211      0.776 0.960 0.000 0.000 0.040
#> SRR1643279     1  0.1211      0.776 0.960 0.000 0.000 0.040
#> SRR1643280     1  0.1211      0.776 0.960 0.000 0.000 0.040
#> SRR1643281     1  0.1211      0.776 0.960 0.000 0.000 0.040
#> SRR1643282     1  0.1211      0.776 0.960 0.000 0.000 0.040
#> SRR1643283     1  0.1211      0.776 0.960 0.000 0.000 0.040
#> SRR1643284     1  0.1211      0.776 0.960 0.000 0.000 0.040
#> SRR1643285     1  0.1211      0.776 0.960 0.000 0.000 0.040
#> SRR1643286     1  0.1211      0.776 0.960 0.000 0.000 0.040
#> SRR1643287     1  0.4673      0.590 0.700 0.000 0.008 0.292
#> SRR1643288     1  0.4673      0.590 0.700 0.000 0.008 0.292
#> SRR1643289     1  0.4673      0.590 0.700 0.000 0.008 0.292
#> SRR1643290     1  0.4673      0.590 0.700 0.000 0.008 0.292
#> SRR1643291     1  0.4673      0.590 0.700 0.000 0.008 0.292
#> SRR1643292     1  0.4673      0.590 0.700 0.000 0.008 0.292
#> SRR1643293     1  0.4673      0.590 0.700 0.000 0.008 0.292
#> SRR1643294     1  0.4673      0.590 0.700 0.000 0.008 0.292
#> SRR1643295     1  0.4673      0.590 0.700 0.000 0.008 0.292
#> SRR1643296     1  0.4673      0.590 0.700 0.000 0.008 0.292
#> SRR1643297     1  0.4673      0.590 0.700 0.000 0.008 0.292
#> SRR1643298     1  0.4673      0.590 0.700 0.000 0.008 0.292
#> SRR1643299     1  0.4673      0.590 0.700 0.000 0.008 0.292
#> SRR1643300     1  0.4673      0.590 0.700 0.000 0.008 0.292
#> SRR1643301     1  0.1022      0.777 0.968 0.000 0.000 0.032
#> SRR1643302     1  0.1022      0.777 0.968 0.000 0.000 0.032
#> SRR1643303     1  0.1022      0.777 0.968 0.000 0.000 0.032
#> SRR1643304     1  0.1022      0.777 0.968 0.000 0.000 0.032
#> SRR1643305     1  0.1022      0.777 0.968 0.000 0.000 0.032
#> SRR1643306     1  0.1022      0.777 0.968 0.000 0.000 0.032
#> SRR1643307     1  0.1022      0.777 0.968 0.000 0.000 0.032
#> SRR1643308     1  0.1022      0.777 0.968 0.000 0.000 0.032
#> SRR1643309     1  0.1022      0.777 0.968 0.000 0.000 0.032
#> SRR1643310     1  0.1022      0.777 0.968 0.000 0.000 0.032
#> SRR1643311     1  0.1022      0.777 0.968 0.000 0.000 0.032
#> SRR1643312     1  0.1022      0.777 0.968 0.000 0.000 0.032
#> SRR1643313     1  0.1022      0.777 0.968 0.000 0.000 0.032
#> SRR1643314     1  0.0592      0.780 0.984 0.000 0.016 0.000
#> SRR1643315     1  0.0592      0.780 0.984 0.000 0.016 0.000
#> SRR1643316     1  0.0592      0.780 0.984 0.000 0.016 0.000
#> SRR1643317     1  0.0592      0.780 0.984 0.000 0.016 0.000
#> SRR1643318     1  0.0592      0.780 0.984 0.000 0.016 0.000
#> SRR1643319     1  0.0592      0.780 0.984 0.000 0.016 0.000
#> SRR1643320     1  0.0592      0.780 0.984 0.000 0.016 0.000
#> SRR1643321     1  0.0592      0.780 0.984 0.000 0.016 0.000
#> SRR1643322     1  0.0592      0.780 0.984 0.000 0.016 0.000
#> SRR1643323     1  0.0592      0.780 0.984 0.000 0.016 0.000
#> SRR1643324     1  0.0592      0.780 0.984 0.000 0.016 0.000
#> SRR1643325     1  0.0592      0.780 0.984 0.000 0.016 0.000
#> SRR1643326     1  0.0592      0.780 0.984 0.000 0.016 0.000
#> SRR1643327     1  0.0592      0.780 0.984 0.000 0.016 0.000
#> SRR1643328     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643329     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643330     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643331     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643332     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643333     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643334     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643335     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643336     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643337     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643338     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643339     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643340     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643341     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643342     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643343     1  0.2635      0.762 0.904 0.000 0.020 0.076
#> SRR1643344     1  0.2635      0.762 0.904 0.000 0.020 0.076
#> SRR1643345     1  0.2635      0.762 0.904 0.000 0.020 0.076
#> SRR1643346     1  0.2635      0.762 0.904 0.000 0.020 0.076
#> SRR1643347     1  0.2635      0.762 0.904 0.000 0.020 0.076
#> SRR1643348     1  0.2635      0.762 0.904 0.000 0.020 0.076
#> SRR1643349     1  0.2635      0.762 0.904 0.000 0.020 0.076
#> SRR1643350     1  0.2635      0.762 0.904 0.000 0.020 0.076
#> SRR1643351     1  0.2635      0.762 0.904 0.000 0.020 0.076
#> SRR1643352     1  0.2635      0.762 0.904 0.000 0.020 0.076
#> SRR1643353     1  0.2635      0.762 0.904 0.000 0.020 0.076
#> SRR1643354     1  0.2635      0.762 0.904 0.000 0.020 0.076
#> SRR1643355     1  0.2635      0.762 0.904 0.000 0.020 0.076
#> SRR1643356     1  0.2635      0.762 0.904 0.000 0.020 0.076
#> SRR1643357     1  0.2635      0.762 0.904 0.000 0.020 0.076
#> SRR1643358     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643359     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643360     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643361     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643362     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643363     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643364     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643365     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643366     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643367     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643368     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643369     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643370     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643371     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643372     1  0.5070      0.397 0.580 0.000 0.004 0.416
#> SRR1643373     1  0.5070      0.400 0.580 0.000 0.004 0.416
#> SRR1643374     1  0.5070      0.400 0.580 0.000 0.004 0.416
#> SRR1643375     1  0.5070      0.400 0.580 0.000 0.004 0.416
#> SRR1643376     1  0.5070      0.400 0.580 0.000 0.004 0.416
#> SRR1643377     1  0.5070      0.400 0.580 0.000 0.004 0.416
#> SRR1643378     1  0.5070      0.400 0.580 0.000 0.004 0.416
#> SRR1643379     1  0.5070      0.400 0.580 0.000 0.004 0.416
#> SRR1643380     1  0.5070      0.400 0.580 0.000 0.004 0.416
#> SRR1643381     1  0.5070      0.400 0.580 0.000 0.004 0.416
#> SRR1643382     1  0.5070      0.400 0.580 0.000 0.004 0.416
#> SRR1643383     1  0.5070      0.400 0.580 0.000 0.004 0.416
#> SRR1643384     1  0.5070      0.400 0.580 0.000 0.004 0.416
#> SRR1643385     1  0.5070      0.400 0.580 0.000 0.004 0.416
#> SRR1643386     1  0.5070      0.400 0.580 0.000 0.004 0.416
#> SRR1643387     1  0.5070      0.400 0.580 0.000 0.004 0.416
#> SRR1643388     1  0.5070      0.400 0.580 0.000 0.004 0.416
#> SRR1643389     1  0.5070      0.400 0.580 0.000 0.004 0.416
#> SRR1643390     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643391     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643392     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643393     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643394     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643395     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643396     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643397     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643398     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643399     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643400     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643401     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643402     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643403     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643404     1  0.1022      0.778 0.968 0.000 0.032 0.000
#> SRR1643405     1  0.2313      0.767 0.924 0.000 0.044 0.032
#> SRR1643406     1  0.2313      0.767 0.924 0.000 0.044 0.032
#> SRR1643407     1  0.2313      0.767 0.924 0.000 0.044 0.032
#> SRR1643408     1  0.2313      0.767 0.924 0.000 0.044 0.032
#> SRR1643409     1  0.2313      0.767 0.924 0.000 0.044 0.032
#> SRR1643410     1  0.2313      0.767 0.924 0.000 0.044 0.032
#> SRR1643411     1  0.2313      0.767 0.924 0.000 0.044 0.032
#> SRR1643412     1  0.2313      0.767 0.924 0.000 0.044 0.032
#> SRR1643413     1  0.2313      0.767 0.924 0.000 0.044 0.032
#> SRR1643414     1  0.2313      0.767 0.924 0.000 0.044 0.032
#> SRR1643415     1  0.2313      0.767 0.924 0.000 0.044 0.032
#> SRR1643416     1  0.2313      0.767 0.924 0.000 0.044 0.032
#> SRR1643417     1  0.2313      0.767 0.924 0.000 0.044 0.032
#> SRR1643418     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643419     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643420     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643421     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643422     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643423     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643424     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643425     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643426     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643427     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643428     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643429     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643430     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643431     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643432     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643433     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643434     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643435     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643436     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643437     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643438     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643439     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643440     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643441     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643442     4  0.2714      1.000 0.112 0.000 0.004 0.884
#> SRR1643443     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643444     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643445     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643446     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643447     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643448     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643449     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643450     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643451     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643452     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643453     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643454     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643455     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643456     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643457     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643458     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643459     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643460     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643461     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643462     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643463     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643464     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643466     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643467     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643468     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643469     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643470     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643471     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643472     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643473     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643474     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643475     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643477     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643478     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643479     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643480     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643481     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643482     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643483     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643484     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643485     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643486     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643487     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643488     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643489     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643490     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643491     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643492     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643493     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643494     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643495     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643496     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643497     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643498     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643499     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643500     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643501     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643502     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643503     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643504     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643505     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643506     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643507     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643508     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643509     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643510     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643511     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643512     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643513     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643531     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643532     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643533     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643534     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643535     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643536     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643537     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643538     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643539     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643540     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643541     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643542     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643543     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643544     2  0.0188      0.996 0.000 0.996 0.000 0.004
#> SRR1643514     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643515     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643516     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643517     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643518     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643519     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643520     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643521     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643522     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643523     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643524     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643525     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643526     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643527     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643528     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643529     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643530     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643545     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643546     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643547     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643548     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643549     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643550     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643551     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643552     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643553     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643554     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643555     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643556     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643558     2  0.0000      0.997 0.000 1.000 0.000 0.000
#> SRR1643559     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643560     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643561     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643562     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643563     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643564     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643565     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643566     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643567     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643568     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643569     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643570     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643571     2  0.0469      0.993 0.000 0.988 0.000 0.012
#> SRR1643572     2  0.0469      0.993 0.000 0.988 0.000 0.012

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1    p2    p3    p4    p5
#> SRR1643167     5  0.4666     0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643168     5  0.4666     0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643169     5  0.4666     0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643170     5  0.4666     0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643171     5  0.4575     0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643172     5  0.4575     0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643173     5  0.4575     0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643174     5  0.4575     0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643175     1  0.2629     0.6603 0.860 0.000 0.004 0.000 0.136
#> SRR1643176     1  0.2629     0.6603 0.860 0.000 0.004 0.000 0.136
#> SRR1643177     1  0.2629     0.6603 0.860 0.000 0.004 0.000 0.136
#> SRR1643178     1  0.2629     0.6603 0.860 0.000 0.004 0.000 0.136
#> SRR1643180     5  0.4666     0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643181     5  0.4666     0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643182     5  0.4666     0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643183     5  0.4575     0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643184     5  0.4575     0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643185     5  0.4575     0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643186     5  0.4575     0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643187     5  0.4666     0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643188     5  0.4666     0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643189     5  0.4666     0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643190     5  0.4666     0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643191     5  0.4575     0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643192     5  0.4575     0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643193     5  0.4575     0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643194     5  0.4575     0.9672 0.392 0.000 0.004 0.008 0.596
#> SRR1643195     5  0.5014     0.9211 0.368 0.000 0.000 0.040 0.592
#> SRR1643196     5  0.5014     0.9211 0.368 0.000 0.000 0.040 0.592
#> SRR1643197     1  0.2984     0.6678 0.856 0.000 0.004 0.016 0.124
#> SRR1643198     1  0.2984     0.6678 0.856 0.000 0.004 0.016 0.124
#> SRR1643199     5  0.4666     0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643200     5  0.4666     0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643201     5  0.4666     0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643202     5  0.4666     0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643203     5  0.4666     0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643204     5  0.4666     0.9689 0.388 0.000 0.004 0.012 0.596
#> SRR1643205     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643206     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643207     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643208     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643209     3  0.0912     0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643210     3  0.0912     0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643211     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643212     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643213     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643214     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643215     3  0.0912     0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643216     3  0.0912     0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643217     3  0.0912     0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643218     3  0.0912     0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643219     3  0.0912     0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643220     3  0.0912     0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643221     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643222     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643223     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643224     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643225     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643226     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643227     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643228     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643229     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643230     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643231     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643232     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643233     3  0.0912     0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643234     3  0.0912     0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643235     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643236     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643237     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643238     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643239     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643240     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643241     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643242     3  0.0912     0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643243     3  0.0912     0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643245     3  0.0912     0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643246     3  0.0912     0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643247     3  0.0912     0.9922 0.012 0.000 0.972 0.000 0.016
#> SRR1643248     3  0.0404     0.9959 0.012 0.000 0.988 0.000 0.000
#> SRR1643249     5  0.4390    -0.0888 0.000 0.000 0.428 0.004 0.568
#> SRR1643250     4  0.4649     0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643251     4  0.4649     0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643252     4  0.4649     0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643253     4  0.4649     0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643254     4  0.4649     0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643255     4  0.4649     0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643256     4  0.4649     0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643257     4  0.4649     0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643258     4  0.4649     0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643259     4  0.4649     0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643260     4  0.4649     0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643261     4  0.4649     0.7157 0.404 0.000 0.000 0.580 0.016
#> SRR1643262     4  0.5113     0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643263     4  0.5113     0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643264     4  0.5113     0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643266     4  0.5113     0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643267     4  0.5113     0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643268     4  0.5113     0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643269     4  0.5113     0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643270     4  0.5113     0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643271     4  0.5113     0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643272     4  0.5113     0.7249 0.380 0.000 0.000 0.576 0.044
#> SRR1643273     1  0.2672     0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643274     1  0.2672     0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643275     1  0.2672     0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643276     1  0.2672     0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643277     1  0.2672     0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643278     1  0.2672     0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643279     1  0.2672     0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643280     1  0.2672     0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643281     1  0.2672     0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643282     1  0.2672     0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643283     1  0.2672     0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643284     1  0.2672     0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643285     1  0.2672     0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643286     1  0.2672     0.7903 0.872 0.000 0.004 0.008 0.116
#> SRR1643287     1  0.5749     0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643288     1  0.5749     0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643289     1  0.5749     0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643290     1  0.5749     0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643291     1  0.5749     0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643292     1  0.5749     0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643293     1  0.5749     0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643294     1  0.5749     0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643295     1  0.5749     0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643296     1  0.5749     0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643297     1  0.5749     0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643298     1  0.5749     0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643299     1  0.5749     0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643300     1  0.5749     0.5920 0.616 0.000 0.004 0.120 0.260
#> SRR1643301     1  0.1661     0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643302     1  0.1661     0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643303     1  0.1661     0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643304     1  0.1661     0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643305     1  0.1661     0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643306     1  0.1661     0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643307     1  0.1661     0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643308     1  0.1661     0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643309     1  0.1661     0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643310     1  0.1661     0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643311     1  0.1661     0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643312     1  0.1661     0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643313     1  0.1661     0.7855 0.940 0.000 0.000 0.036 0.024
#> SRR1643314     1  0.1461     0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643315     1  0.1461     0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643316     1  0.1461     0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643317     1  0.1461     0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643318     1  0.1461     0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643319     1  0.1461     0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643320     1  0.1461     0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643321     1  0.1461     0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643322     1  0.1461     0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643323     1  0.1461     0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643324     1  0.1461     0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643325     1  0.1461     0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643326     1  0.1461     0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643327     1  0.1461     0.7929 0.952 0.000 0.004 0.016 0.028
#> SRR1643328     1  0.1498     0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643329     1  0.1498     0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643330     1  0.1498     0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643331     1  0.1498     0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643332     1  0.1498     0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643333     1  0.1498     0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643334     1  0.1498     0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643335     1  0.1498     0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643336     1  0.1498     0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643337     1  0.1498     0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643338     1  0.1498     0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643339     1  0.1498     0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643340     1  0.1498     0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643341     1  0.1498     0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643342     1  0.1498     0.7919 0.952 0.000 0.016 0.008 0.024
#> SRR1643343     1  0.4651     0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643344     1  0.4651     0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643345     1  0.4651     0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643346     1  0.4651     0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643347     1  0.4651     0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643348     1  0.4651     0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643349     1  0.4651     0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643350     1  0.4651     0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643351     1  0.4651     0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643352     1  0.4651     0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643353     1  0.4651     0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643354     1  0.4651     0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643355     1  0.4651     0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643356     1  0.4651     0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643357     1  0.4651     0.7016 0.728 0.000 0.004 0.060 0.208
#> SRR1643358     4  0.4789     0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643359     4  0.4789     0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643360     4  0.4789     0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643361     4  0.4789     0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643362     4  0.4789     0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643363     4  0.4789     0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643364     4  0.4789     0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643365     4  0.4789     0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643366     4  0.4789     0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643367     4  0.4789     0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643368     4  0.4789     0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643369     4  0.4789     0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643370     4  0.4789     0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643371     4  0.4789     0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643372     4  0.4789     0.7269 0.392 0.000 0.000 0.584 0.024
#> SRR1643373     4  0.5102     0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643374     4  0.5102     0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643375     4  0.5102     0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643376     4  0.5102     0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643377     4  0.5102     0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643378     4  0.5102     0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643379     4  0.5102     0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643380     4  0.5102     0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643381     4  0.5102     0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643382     4  0.5102     0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643383     4  0.5102     0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643384     4  0.5102     0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643385     4  0.5102     0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643386     4  0.5102     0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643387     4  0.5102     0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643388     4  0.5102     0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643389     4  0.5102     0.7283 0.376 0.000 0.000 0.580 0.044
#> SRR1643390     1  0.1630     0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643391     1  0.1630     0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643392     1  0.1630     0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643393     1  0.1630     0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643394     1  0.1630     0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643395     1  0.1630     0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643396     1  0.1630     0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643397     1  0.1630     0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643398     1  0.1630     0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643399     1  0.1630     0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643400     1  0.1630     0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643401     1  0.1630     0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643402     1  0.1630     0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643403     1  0.1630     0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643404     1  0.1630     0.8005 0.944 0.000 0.016 0.004 0.036
#> SRR1643405     1  0.3265     0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643406     1  0.3265     0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643407     1  0.3265     0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643408     1  0.3265     0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643409     1  0.3265     0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643410     1  0.3265     0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643411     1  0.3265     0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643412     1  0.3265     0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643413     1  0.3265     0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643414     1  0.3265     0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643415     1  0.3265     0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643416     1  0.3265     0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643417     1  0.3265     0.7803 0.848 0.000 0.020 0.012 0.120
#> SRR1643418     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643419     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643420     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643421     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643422     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643423     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643424     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643425     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643426     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643427     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643428     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643429     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643430     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643431     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643432     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643433     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643434     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643435     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643436     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643437     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643438     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643439     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643440     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643441     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643442     4  0.2701     0.5156 0.012 0.000 0.012 0.884 0.092
#> SRR1643443     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643444     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643445     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643446     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643447     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643448     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643449     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643450     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643451     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643452     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643453     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643454     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643455     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643456     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643457     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643458     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643459     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643460     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643461     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643462     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643463     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643464     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643466     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643467     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643468     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643469     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643470     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643471     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643472     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643473     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643474     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643475     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643477     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643478     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643479     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643480     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643481     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643482     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643483     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643484     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643485     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643486     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643487     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643488     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643489     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643490     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643491     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643492     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643493     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643494     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643495     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643496     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643497     2  0.0000     0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643498     2  0.0000     0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643499     2  0.0000     0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643500     2  0.0000     0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643501     2  0.0000     0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643502     2  0.0000     0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643503     2  0.0000     0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643504     2  0.0000     0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643505     2  0.0000     0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643506     2  0.0000     0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643507     2  0.0000     0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643508     2  0.0000     0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643509     2  0.0000     0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643510     2  0.0000     0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643511     2  0.0000     0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643512     2  0.0000     0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643513     2  0.0000     0.9858 0.000 1.000 0.000 0.000 0.000
#> SRR1643531     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643532     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643533     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643534     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643535     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643536     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643537     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643538     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643539     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643540     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643541     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643542     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643543     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643544     2  0.0609     0.9832 0.000 0.980 0.000 0.000 0.020
#> SRR1643514     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643515     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643516     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643517     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643518     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643519     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643520     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643521     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643522     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643523     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643524     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643525     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643526     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643527     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643528     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643529     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643530     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643545     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643546     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643547     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643548     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643549     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643550     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643551     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643552     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643553     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643554     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643555     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643556     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643558     2  0.0162     0.9857 0.000 0.996 0.000 0.000 0.004
#> SRR1643559     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643560     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643561     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643562     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643563     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643564     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643565     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643566     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643567     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643568     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643569     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643570     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643571     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048
#> SRR1643572     2  0.1197     0.9721 0.000 0.952 0.000 0.000 0.048

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2    p3    p4    p5    p6
#> SRR1643167     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643168     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643169     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643170     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643171     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643172     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643173     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643174     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643175     1  0.4134      0.519 0.708 0.000 0.000 0.052 0.000 0.240
#> SRR1643176     1  0.4134      0.519 0.708 0.000 0.000 0.052 0.000 0.240
#> SRR1643177     1  0.4134      0.519 0.708 0.000 0.000 0.052 0.000 0.240
#> SRR1643178     1  0.4134      0.519 0.708 0.000 0.000 0.052 0.000 0.240
#> SRR1643180     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643181     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643182     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643183     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643184     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643185     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643186     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643187     6  0.3342      0.971 0.228 0.000 0.000 0.012 0.000 0.760
#> SRR1643188     6  0.3342      0.971 0.228 0.000 0.000 0.012 0.000 0.760
#> SRR1643189     6  0.3342      0.971 0.228 0.000 0.000 0.012 0.000 0.760
#> SRR1643190     6  0.3342      0.971 0.228 0.000 0.000 0.012 0.000 0.760
#> SRR1643191     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643192     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643193     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643194     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643195     6  0.3248      0.977 0.224 0.000 0.000 0.004 0.004 0.768
#> SRR1643196     6  0.3248      0.977 0.224 0.000 0.000 0.004 0.004 0.768
#> SRR1643197     1  0.3588      0.602 0.776 0.000 0.000 0.044 0.000 0.180
#> SRR1643198     1  0.3588      0.602 0.776 0.000 0.000 0.044 0.000 0.180
#> SRR1643199     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643200     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643201     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643202     6  0.3136      0.982 0.228 0.000 0.000 0.004 0.000 0.768
#> SRR1643203     6  0.3342      0.971 0.228 0.000 0.000 0.012 0.000 0.760
#> SRR1643204     6  0.3342      0.971 0.228 0.000 0.000 0.012 0.000 0.760
#> SRR1643205     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643206     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643207     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643208     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643209     3  0.1370      0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643210     3  0.1370      0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643211     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643212     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643213     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643214     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643215     3  0.1370      0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643216     3  0.1370      0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643217     3  0.1370      0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643218     3  0.1370      0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643219     3  0.1370      0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643220     3  0.1370      0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643221     3  0.0146      0.985 0.004 0.000 0.996 0.000 0.000 0.000
#> SRR1643222     3  0.0146      0.985 0.004 0.000 0.996 0.000 0.000 0.000
#> SRR1643223     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643224     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643225     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643226     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643227     3  0.0291      0.984 0.004 0.000 0.992 0.000 0.000 0.004
#> SRR1643228     3  0.0291      0.984 0.004 0.000 0.992 0.000 0.000 0.004
#> SRR1643229     3  0.0291      0.984 0.004 0.000 0.992 0.000 0.000 0.004
#> SRR1643230     3  0.0146      0.985 0.004 0.000 0.996 0.000 0.000 0.000
#> SRR1643231     3  0.0767      0.979 0.004 0.000 0.976 0.008 0.000 0.012
#> SRR1643232     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643233     3  0.1370      0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643234     3  0.1370      0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643235     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643236     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643237     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643238     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643239     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643240     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643241     3  0.0291      0.985 0.004 0.000 0.992 0.004 0.000 0.000
#> SRR1643242     3  0.1693      0.967 0.004 0.000 0.932 0.020 0.000 0.044
#> SRR1643243     3  0.1370      0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643245     3  0.1370      0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643246     3  0.1370      0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643247     3  0.1370      0.974 0.004 0.000 0.948 0.012 0.000 0.036
#> SRR1643248     3  0.0291      0.984 0.004 0.000 0.992 0.000 0.000 0.004
#> SRR1643249     6  0.3271      0.507 0.000 0.000 0.232 0.008 0.000 0.760
#> SRR1643250     4  0.6312      0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643251     4  0.6312      0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643252     4  0.6312      0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643253     4  0.6312      0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643254     4  0.6312      0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643255     4  0.6312      0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643256     4  0.6312      0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643257     4  0.6312      0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643258     4  0.6312      0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643259     4  0.6312      0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643260     4  0.6312      0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643261     4  0.6312      0.736 0.228 0.000 0.000 0.432 0.324 0.016
#> SRR1643262     4  0.6250      0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643263     4  0.6250      0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643264     4  0.6250      0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643266     4  0.6250      0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643267     4  0.6250      0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643268     4  0.6250      0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643269     4  0.6250      0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643270     4  0.6250      0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643271     4  0.6250      0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643272     4  0.6250      0.747 0.212 0.000 0.000 0.448 0.324 0.016
#> SRR1643273     1  0.4447      0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643274     1  0.4447      0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643275     1  0.4447      0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643276     1  0.4447      0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643277     1  0.4447      0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643278     1  0.4447      0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643279     1  0.4447      0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643280     1  0.4447      0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643281     1  0.4447      0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643282     1  0.4447      0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643283     1  0.4447      0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643284     1  0.4447      0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643285     1  0.4447      0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643286     1  0.4447      0.665 0.704 0.000 0.000 0.196 0.000 0.100
#> SRR1643287     4  0.6769     -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643288     4  0.6769     -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643289     4  0.6769     -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643290     4  0.6769     -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643291     4  0.6769     -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643292     4  0.6769     -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643293     4  0.6769     -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643294     4  0.6769     -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643295     4  0.6769     -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643296     4  0.6769     -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643297     4  0.6769     -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643298     4  0.6769     -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643299     4  0.6769     -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643300     4  0.6769     -0.218 0.364 0.000 0.000 0.408 0.072 0.156
#> SRR1643301     1  0.2573      0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643302     1  0.2573      0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643303     1  0.2573      0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643304     1  0.2573      0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643305     1  0.2573      0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643306     1  0.2573      0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643307     1  0.2573      0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643308     1  0.2573      0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643309     1  0.2573      0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643310     1  0.2573      0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643311     1  0.2573      0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643312     1  0.2573      0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643313     1  0.2573      0.743 0.864 0.000 0.000 0.112 0.000 0.024
#> SRR1643314     1  0.1950      0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643315     1  0.1950      0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643316     1  0.1950      0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643317     1  0.1950      0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643318     1  0.1950      0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643319     1  0.1950      0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643320     1  0.1950      0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643321     1  0.1950      0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643322     1  0.1950      0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643323     1  0.1950      0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643324     1  0.1950      0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643325     1  0.1950      0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643326     1  0.1950      0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643327     1  0.1950      0.771 0.912 0.000 0.000 0.064 0.000 0.024
#> SRR1643328     1  0.1518      0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643329     1  0.1518      0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643330     1  0.1518      0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643331     1  0.1518      0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643332     1  0.1518      0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643333     1  0.1518      0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643334     1  0.1518      0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643335     1  0.1518      0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643336     1  0.1518      0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643337     1  0.1518      0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643338     1  0.1518      0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643339     1  0.1518      0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643340     1  0.1518      0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643341     1  0.1518      0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643342     1  0.1518      0.779 0.944 0.000 0.008 0.024 0.000 0.024
#> SRR1643343     1  0.5310      0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643344     1  0.5310      0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643345     1  0.5310      0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643346     1  0.5310      0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643347     1  0.5310      0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643348     1  0.5310      0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643349     1  0.5310      0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643350     1  0.5310      0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643351     1  0.5310      0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643352     1  0.5310      0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643353     1  0.5310      0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643354     1  0.5310      0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643355     1  0.5310      0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643356     1  0.5310      0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643357     1  0.5310      0.414 0.480 0.000 0.004 0.428 0.000 0.088
#> SRR1643358     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643359     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643360     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643361     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643362     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643363     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643364     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643365     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643366     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643367     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643368     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643369     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643370     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643371     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643372     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643373     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643374     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643375     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643376     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643377     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643378     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643379     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643380     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643381     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643382     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643383     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643384     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643385     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643386     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643387     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643388     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643389     4  0.6230      0.748 0.204 0.000 0.000 0.448 0.332 0.016
#> SRR1643390     1  0.1262      0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643391     1  0.1262      0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643392     1  0.1262      0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643393     1  0.1262      0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643394     1  0.1262      0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643395     1  0.1262      0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643396     1  0.1262      0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643397     1  0.1262      0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643398     1  0.1262      0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643399     1  0.1262      0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643400     1  0.1262      0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643401     1  0.1262      0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643402     1  0.1262      0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643403     1  0.1262      0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643404     1  0.1262      0.781 0.956 0.000 0.008 0.020 0.000 0.016
#> SRR1643405     1  0.3048      0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643406     1  0.3048      0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643407     1  0.3048      0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643408     1  0.3048      0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643409     1  0.3048      0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643410     1  0.3048      0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643411     1  0.3048      0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643412     1  0.3048      0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643413     1  0.3048      0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643414     1  0.3048      0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643415     1  0.3048      0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643416     1  0.3048      0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643417     1  0.3048      0.749 0.848 0.000 0.008 0.100 0.000 0.044
#> SRR1643418     5  0.0146      0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643419     5  0.0146      0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643420     5  0.0146      0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643421     5  0.0146      0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643422     5  0.0146      0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643423     5  0.0146      0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643424     5  0.0146      0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643425     5  0.0146      0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643426     5  0.0146      0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643427     5  0.0146      0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643428     5  0.0146      0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643429     5  0.0146      0.998 0.000 0.000 0.000 0.000 0.996 0.004
#> SRR1643430     5  0.0000      0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643431     5  0.0000      0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643432     5  0.0000      0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643433     5  0.0000      0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643434     5  0.0000      0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643435     5  0.0000      0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643436     5  0.0000      0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643437     5  0.0000      0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643438     5  0.0000      0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643439     5  0.0000      0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643440     5  0.0000      0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643441     5  0.0000      0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643442     5  0.0000      0.998 0.000 0.000 0.000 0.000 1.000 0.000
#> SRR1643443     2  0.1461      0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643444     2  0.1461      0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643445     2  0.1461      0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643446     2  0.1461      0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643447     2  0.1461      0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643448     2  0.1461      0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643449     2  0.1461      0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643450     2  0.1461      0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643451     2  0.1461      0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643452     2  0.1461      0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643453     2  0.1461      0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643454     2  0.1461      0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643455     2  0.1461      0.962 0.000 0.940 0.000 0.044 0.000 0.016
#> SRR1643456     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643457     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643458     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643459     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643460     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643461     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643462     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643463     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643464     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643466     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643467     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643468     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643469     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643470     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643471     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643472     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643473     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643474     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643475     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643477     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643478     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643479     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643480     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643481     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643482     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643483     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643484     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643485     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643486     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643487     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643488     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643489     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643490     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643491     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643492     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643493     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643494     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643495     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643496     2  0.0146      0.972 0.000 0.996 0.000 0.004 0.000 0.000
#> SRR1643497     2  0.0291      0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643498     2  0.0291      0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643499     2  0.0291      0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643500     2  0.0291      0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643501     2  0.0291      0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643502     2  0.0291      0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643503     2  0.0291      0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643504     2  0.0291      0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643505     2  0.0405      0.971 0.000 0.988 0.000 0.008 0.000 0.004
#> SRR1643506     2  0.0291      0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643507     2  0.0291      0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643508     2  0.0291      0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643509     2  0.0291      0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643510     2  0.0291      0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643511     2  0.0291      0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643512     2  0.0291      0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643513     2  0.0291      0.971 0.000 0.992 0.000 0.004 0.000 0.004
#> SRR1643531     2  0.1320      0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643532     2  0.1320      0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643533     2  0.1320      0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643534     2  0.1320      0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643535     2  0.1320      0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643536     2  0.1320      0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643537     2  0.1320      0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643538     2  0.1320      0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643539     2  0.1320      0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643540     2  0.1320      0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643541     2  0.1320      0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643542     2  0.1320      0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643543     2  0.1320      0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643544     2  0.1320      0.965 0.000 0.948 0.000 0.036 0.000 0.016
#> SRR1643514     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643515     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643516     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643517     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643518     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643519     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643520     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643521     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643522     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643523     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643524     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643525     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643526     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643527     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643528     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643529     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643530     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643545     2  0.0146      0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643546     2  0.0146      0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643547     2  0.0146      0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643548     2  0.0146      0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643549     2  0.0146      0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643550     2  0.0146      0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643551     2  0.0146      0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643552     2  0.0146      0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643553     2  0.0146      0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643554     2  0.0146      0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643555     2  0.0146      0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643556     2  0.0146      0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643558     2  0.0146      0.972 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643559     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643560     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643561     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643562     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643563     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643564     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643565     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643566     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643567     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643568     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643569     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643570     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643571     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020
#> SRR1643572     2  0.1867      0.950 0.000 0.916 0.000 0.064 0.000 0.020

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-ATC-skmeans-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-ATC-skmeans-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-ATC-skmeans-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-ATC-skmeans-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-ATC-skmeans-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-ATC-skmeans-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-ATC-skmeans-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-ATC-skmeans-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-ATC-skmeans-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-ATC-skmeans-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-ATC-skmeans-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-ATC-skmeans-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-ATC-skmeans-get-signatures-3

get_signatures(res, k = 5)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-ATC-skmeans-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-ATC-skmeans-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-ATC-skmeans-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-ATC-skmeans-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-ATC-skmeans-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)
#> Error in mat[ceiling(1:nr/h_ratio), ceiling(1:nc/w_ratio), drop = FALSE]: subscript out of bounds

plot of chunk tab-ATC-skmeans-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-ATC-skmeans-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk ATC-skmeans-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-ATC-skmeans-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-ATC-skmeans-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-ATC-skmeans-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-ATC-skmeans-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-ATC-skmeans-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk ATC-skmeans-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


ATC:pam*

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["ATC", "pam"]
# you can also extract it by
# res = res_list["ATC:pam"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'ATC' method.
#>   Subgroups are detected by 'pam' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 6.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk ATC-pam-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk ATC-pam-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000         0.4350 0.566   0.566
#> 3 3 0.765           0.834       0.885         0.3777 0.876   0.781
#> 4 4 0.990           0.962       0.975         0.1995 0.832   0.622
#> 5 5 0.914           0.939       0.943         0.0577 0.962   0.863
#> 6 6 0.941           0.952       0.967         0.0605 0.950   0.792

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 6
#> attr(,"optional")
#> [1] 2 4 5

There is also optional best \(k\) = 2 4 5 that is worth to check.

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1 p2    p3
#> SRR1643167     1  0.0000      0.685 1.000  0 0.000
#> SRR1643168     1  0.0000      0.685 1.000  0 0.000
#> SRR1643169     1  0.0000      0.685 1.000  0 0.000
#> SRR1643170     1  0.0000      0.685 1.000  0 0.000
#> SRR1643171     1  0.0000      0.685 1.000  0 0.000
#> SRR1643172     1  0.0000      0.685 1.000  0 0.000
#> SRR1643173     1  0.0000      0.685 1.000  0 0.000
#> SRR1643174     1  0.0000      0.685 1.000  0 0.000
#> SRR1643175     1  0.4605      0.709 0.796  0 0.204
#> SRR1643176     1  0.4750      0.711 0.784  0 0.216
#> SRR1643177     1  0.4750      0.716 0.784  0 0.216
#> SRR1643178     1  0.4605      0.706 0.796  0 0.204
#> SRR1643180     1  0.0000      0.685 1.000  0 0.000
#> SRR1643181     1  0.0000      0.685 1.000  0 0.000
#> SRR1643182     1  0.0000      0.685 1.000  0 0.000
#> SRR1643183     1  0.0000      0.685 1.000  0 0.000
#> SRR1643184     1  0.0000      0.685 1.000  0 0.000
#> SRR1643185     1  0.0000      0.685 1.000  0 0.000
#> SRR1643186     1  0.0000      0.685 1.000  0 0.000
#> SRR1643187     1  0.1031      0.691 0.976  0 0.024
#> SRR1643188     1  0.1031      0.691 0.976  0 0.024
#> SRR1643189     1  0.1031      0.691 0.976  0 0.024
#> SRR1643190     1  0.1031      0.691 0.976  0 0.024
#> SRR1643191     1  0.0000      0.685 1.000  0 0.000
#> SRR1643192     1  0.0000      0.685 1.000  0 0.000
#> SRR1643193     1  0.0000      0.685 1.000  0 0.000
#> SRR1643194     1  0.0000      0.685 1.000  0 0.000
#> SRR1643195     1  0.6095      0.743 0.608  0 0.392
#> SRR1643196     1  0.6095      0.743 0.608  0 0.392
#> SRR1643197     1  0.0000      0.685 1.000  0 0.000
#> SRR1643198     1  0.0000      0.685 1.000  0 0.000
#> SRR1643199     1  0.0000      0.685 1.000  0 0.000
#> SRR1643200     1  0.0000      0.685 1.000  0 0.000
#> SRR1643201     1  0.2625      0.700 0.916  0 0.084
#> SRR1643202     1  0.2261      0.698 0.932  0 0.068
#> SRR1643203     1  0.0000      0.685 1.000  0 0.000
#> SRR1643204     1  0.0000      0.685 1.000  0 0.000
#> SRR1643205     3  0.6095      0.996 0.392  0 0.608
#> SRR1643206     3  0.6095      0.996 0.392  0 0.608
#> SRR1643207     3  0.6095      0.996 0.392  0 0.608
#> SRR1643208     3  0.6095      0.996 0.392  0 0.608
#> SRR1643209     3  0.6095      0.996 0.392  0 0.608
#> SRR1643210     3  0.6095      0.996 0.392  0 0.608
#> SRR1643211     3  0.6095      0.996 0.392  0 0.608
#> SRR1643212     3  0.6095      0.996 0.392  0 0.608
#> SRR1643213     3  0.6095      0.996 0.392  0 0.608
#> SRR1643214     3  0.6095      0.996 0.392  0 0.608
#> SRR1643215     3  0.6095      0.996 0.392  0 0.608
#> SRR1643216     3  0.6095      0.996 0.392  0 0.608
#> SRR1643217     3  0.6095      0.996 0.392  0 0.608
#> SRR1643218     3  0.6095      0.996 0.392  0 0.608
#> SRR1643219     3  0.6095      0.996 0.392  0 0.608
#> SRR1643220     3  0.6095      0.996 0.392  0 0.608
#> SRR1643221     3  0.6095      0.996 0.392  0 0.608
#> SRR1643222     3  0.6095      0.996 0.392  0 0.608
#> SRR1643223     3  0.6095      0.996 0.392  0 0.608
#> SRR1643224     3  0.6095      0.996 0.392  0 0.608
#> SRR1643225     3  0.6095      0.996 0.392  0 0.608
#> SRR1643226     3  0.6095      0.996 0.392  0 0.608
#> SRR1643227     3  0.6095      0.996 0.392  0 0.608
#> SRR1643228     3  0.6095      0.996 0.392  0 0.608
#> SRR1643229     3  0.6095      0.996 0.392  0 0.608
#> SRR1643230     3  0.6095      0.996 0.392  0 0.608
#> SRR1643231     3  0.6095      0.996 0.392  0 0.608
#> SRR1643232     3  0.5810      0.920 0.336  0 0.664
#> SRR1643233     3  0.6095      0.996 0.392  0 0.608
#> SRR1643234     3  0.6095      0.996 0.392  0 0.608
#> SRR1643235     3  0.6045      0.982 0.380  0 0.620
#> SRR1643236     3  0.6026      0.977 0.376  0 0.624
#> SRR1643237     3  0.6008      0.972 0.372  0 0.628
#> SRR1643238     3  0.6095      0.996 0.392  0 0.608
#> SRR1643239     3  0.6095      0.996 0.392  0 0.608
#> SRR1643240     3  0.6095      0.996 0.392  0 0.608
#> SRR1643241     3  0.6095      0.996 0.392  0 0.608
#> SRR1643242     3  0.6140      0.980 0.404  0 0.596
#> SRR1643243     3  0.6045      0.982 0.380  0 0.620
#> SRR1643245     3  0.6095      0.996 0.392  0 0.608
#> SRR1643246     3  0.6095      0.996 0.392  0 0.608
#> SRR1643247     3  0.6095      0.996 0.392  0 0.608
#> SRR1643248     3  0.6095      0.996 0.392  0 0.608
#> SRR1643249     1  0.2066      0.652 0.940  0 0.060
#> SRR1643250     1  0.6095      0.743 0.608  0 0.392
#> SRR1643251     1  0.6095      0.743 0.608  0 0.392
#> SRR1643252     1  0.6095      0.743 0.608  0 0.392
#> SRR1643253     1  0.6095      0.743 0.608  0 0.392
#> SRR1643254     1  0.6095      0.743 0.608  0 0.392
#> SRR1643255     1  0.6095      0.743 0.608  0 0.392
#> SRR1643256     1  0.6095      0.743 0.608  0 0.392
#> SRR1643257     1  0.6095      0.743 0.608  0 0.392
#> SRR1643258     1  0.6095      0.743 0.608  0 0.392
#> SRR1643259     1  0.6095      0.743 0.608  0 0.392
#> SRR1643260     1  0.6095      0.743 0.608  0 0.392
#> SRR1643261     1  0.6095      0.743 0.608  0 0.392
#> SRR1643262     1  0.6095      0.743 0.608  0 0.392
#> SRR1643263     1  0.6095      0.743 0.608  0 0.392
#> SRR1643264     1  0.6095      0.743 0.608  0 0.392
#> SRR1643266     1  0.6095      0.743 0.608  0 0.392
#> SRR1643267     1  0.6095      0.743 0.608  0 0.392
#> SRR1643268     1  0.6095      0.743 0.608  0 0.392
#> SRR1643269     1  0.6095      0.743 0.608  0 0.392
#> SRR1643270     1  0.6095      0.743 0.608  0 0.392
#> SRR1643271     1  0.6095      0.743 0.608  0 0.392
#> SRR1643272     1  0.6095      0.743 0.608  0 0.392
#> SRR1643273     1  0.0000      0.685 1.000  0 0.000
#> SRR1643274     1  0.0000      0.685 1.000  0 0.000
#> SRR1643275     1  0.0000      0.685 1.000  0 0.000
#> SRR1643276     1  0.0000      0.685 1.000  0 0.000
#> SRR1643277     1  0.0000      0.685 1.000  0 0.000
#> SRR1643278     1  0.0000      0.685 1.000  0 0.000
#> SRR1643279     1  0.0000      0.685 1.000  0 0.000
#> SRR1643280     1  0.0000      0.685 1.000  0 0.000
#> SRR1643281     1  0.0000      0.685 1.000  0 0.000
#> SRR1643282     1  0.0000      0.685 1.000  0 0.000
#> SRR1643283     1  0.0000      0.685 1.000  0 0.000
#> SRR1643284     1  0.0000      0.685 1.000  0 0.000
#> SRR1643285     1  0.0000      0.685 1.000  0 0.000
#> SRR1643286     1  0.0000      0.685 1.000  0 0.000
#> SRR1643287     1  0.6095      0.743 0.608  0 0.392
#> SRR1643288     1  0.6095      0.743 0.608  0 0.392
#> SRR1643289     1  0.6095      0.743 0.608  0 0.392
#> SRR1643290     1  0.6095      0.743 0.608  0 0.392
#> SRR1643291     1  0.6095      0.743 0.608  0 0.392
#> SRR1643292     1  0.6095      0.743 0.608  0 0.392
#> SRR1643293     1  0.6095      0.743 0.608  0 0.392
#> SRR1643294     1  0.6095      0.743 0.608  0 0.392
#> SRR1643295     1  0.6095      0.743 0.608  0 0.392
#> SRR1643296     1  0.6095      0.743 0.608  0 0.392
#> SRR1643297     1  0.6095      0.743 0.608  0 0.392
#> SRR1643298     1  0.6095      0.743 0.608  0 0.392
#> SRR1643299     1  0.6095      0.743 0.608  0 0.392
#> SRR1643300     1  0.6095      0.743 0.608  0 0.392
#> SRR1643301     1  0.0000      0.685 1.000  0 0.000
#> SRR1643302     1  0.0000      0.685 1.000  0 0.000
#> SRR1643303     1  0.1031      0.691 0.976  0 0.024
#> SRR1643304     1  0.0237      0.686 0.996  0 0.004
#> SRR1643305     1  0.0424      0.687 0.992  0 0.008
#> SRR1643306     1  0.1529      0.693 0.960  0 0.040
#> SRR1643307     1  0.0000      0.685 1.000  0 0.000
#> SRR1643308     1  0.0000      0.685 1.000  0 0.000
#> SRR1643309     1  0.0424      0.687 0.992  0 0.008
#> SRR1643310     1  0.3038      0.701 0.896  0 0.104
#> SRR1643311     1  0.1529      0.693 0.960  0 0.040
#> SRR1643312     1  0.0592      0.688 0.988  0 0.012
#> SRR1643313     1  0.1031      0.691 0.976  0 0.024
#> SRR1643314     1  0.0000      0.685 1.000  0 0.000
#> SRR1643315     1  0.0000      0.685 1.000  0 0.000
#> SRR1643316     1  0.0000      0.685 1.000  0 0.000
#> SRR1643317     1  0.0000      0.685 1.000  0 0.000
#> SRR1643318     1  0.0000      0.685 1.000  0 0.000
#> SRR1643319     1  0.0000      0.685 1.000  0 0.000
#> SRR1643320     1  0.0000      0.685 1.000  0 0.000
#> SRR1643321     1  0.0000      0.685 1.000  0 0.000
#> SRR1643322     1  0.0000      0.685 1.000  0 0.000
#> SRR1643323     1  0.0000      0.685 1.000  0 0.000
#> SRR1643324     1  0.0000      0.685 1.000  0 0.000
#> SRR1643325     1  0.0000      0.685 1.000  0 0.000
#> SRR1643326     1  0.0000      0.685 1.000  0 0.000
#> SRR1643327     1  0.0000      0.685 1.000  0 0.000
#> SRR1643328     1  0.0000      0.685 1.000  0 0.000
#> SRR1643329     1  0.0000      0.685 1.000  0 0.000
#> SRR1643330     1  0.0000      0.685 1.000  0 0.000
#> SRR1643331     1  0.0000      0.685 1.000  0 0.000
#> SRR1643332     1  0.0000      0.685 1.000  0 0.000
#> SRR1643333     1  0.0000      0.685 1.000  0 0.000
#> SRR1643334     1  0.0000      0.685 1.000  0 0.000
#> SRR1643335     1  0.0000      0.685 1.000  0 0.000
#> SRR1643336     1  0.0000      0.685 1.000  0 0.000
#> SRR1643337     1  0.0000      0.685 1.000  0 0.000
#> SRR1643338     1  0.0000      0.685 1.000  0 0.000
#> SRR1643339     1  0.0000      0.685 1.000  0 0.000
#> SRR1643340     1  0.0000      0.685 1.000  0 0.000
#> SRR1643341     1  0.0000      0.685 1.000  0 0.000
#> SRR1643342     1  0.0000      0.685 1.000  0 0.000
#> SRR1643343     1  0.6095      0.743 0.608  0 0.392
#> SRR1643344     1  0.6095      0.743 0.608  0 0.392
#> SRR1643345     1  0.6095      0.743 0.608  0 0.392
#> SRR1643346     1  0.6095      0.743 0.608  0 0.392
#> SRR1643347     1  0.6095      0.743 0.608  0 0.392
#> SRR1643348     1  0.6095      0.743 0.608  0 0.392
#> SRR1643349     1  0.6095      0.743 0.608  0 0.392
#> SRR1643350     1  0.6095      0.743 0.608  0 0.392
#> SRR1643351     1  0.6095      0.743 0.608  0 0.392
#> SRR1643352     1  0.6095      0.743 0.608  0 0.392
#> SRR1643353     1  0.6095      0.743 0.608  0 0.392
#> SRR1643354     1  0.6095      0.743 0.608  0 0.392
#> SRR1643355     1  0.6095      0.743 0.608  0 0.392
#> SRR1643356     1  0.6095      0.743 0.608  0 0.392
#> SRR1643357     1  0.6095      0.743 0.608  0 0.392
#> SRR1643358     1  0.6095      0.743 0.608  0 0.392
#> SRR1643359     1  0.6095      0.743 0.608  0 0.392
#> SRR1643360     1  0.6095      0.743 0.608  0 0.392
#> SRR1643361     1  0.6095      0.743 0.608  0 0.392
#> SRR1643362     1  0.6095      0.743 0.608  0 0.392
#> SRR1643363     1  0.6095      0.743 0.608  0 0.392
#> SRR1643364     1  0.6095      0.743 0.608  0 0.392
#> SRR1643365     1  0.6095      0.743 0.608  0 0.392
#> SRR1643366     1  0.6095      0.743 0.608  0 0.392
#> SRR1643367     1  0.6095      0.743 0.608  0 0.392
#> SRR1643368     1  0.6095      0.743 0.608  0 0.392
#> SRR1643369     1  0.6095      0.743 0.608  0 0.392
#> SRR1643370     1  0.6095      0.743 0.608  0 0.392
#> SRR1643371     1  0.6095      0.743 0.608  0 0.392
#> SRR1643372     1  0.6095      0.743 0.608  0 0.392
#> SRR1643373     1  0.6095      0.743 0.608  0 0.392
#> SRR1643374     1  0.6095      0.743 0.608  0 0.392
#> SRR1643375     1  0.6095      0.743 0.608  0 0.392
#> SRR1643376     1  0.6095      0.743 0.608  0 0.392
#> SRR1643377     1  0.6095      0.743 0.608  0 0.392
#> SRR1643378     1  0.6095      0.743 0.608  0 0.392
#> SRR1643379     1  0.6095      0.743 0.608  0 0.392
#> SRR1643380     1  0.6095      0.743 0.608  0 0.392
#> SRR1643381     1  0.6095      0.743 0.608  0 0.392
#> SRR1643382     1  0.6095      0.743 0.608  0 0.392
#> SRR1643383     1  0.6095      0.743 0.608  0 0.392
#> SRR1643384     1  0.6095      0.743 0.608  0 0.392
#> SRR1643385     1  0.6095      0.743 0.608  0 0.392
#> SRR1643386     1  0.6095      0.743 0.608  0 0.392
#> SRR1643387     1  0.6095      0.743 0.608  0 0.392
#> SRR1643388     1  0.6095      0.743 0.608  0 0.392
#> SRR1643389     1  0.6095      0.743 0.608  0 0.392
#> SRR1643390     1  0.0000      0.685 1.000  0 0.000
#> SRR1643391     1  0.0000      0.685 1.000  0 0.000
#> SRR1643392     1  0.0000      0.685 1.000  0 0.000
#> SRR1643393     1  0.0000      0.685 1.000  0 0.000
#> SRR1643394     1  0.0000      0.685 1.000  0 0.000
#> SRR1643395     1  0.0000      0.685 1.000  0 0.000
#> SRR1643396     1  0.0000      0.685 1.000  0 0.000
#> SRR1643397     1  0.0000      0.685 1.000  0 0.000
#> SRR1643398     1  0.0000      0.685 1.000  0 0.000
#> SRR1643399     1  0.0000      0.685 1.000  0 0.000
#> SRR1643400     1  0.0000      0.685 1.000  0 0.000
#> SRR1643401     1  0.0000      0.685 1.000  0 0.000
#> SRR1643402     1  0.0000      0.685 1.000  0 0.000
#> SRR1643403     1  0.0000      0.685 1.000  0 0.000
#> SRR1643404     1  0.0000      0.685 1.000  0 0.000
#> SRR1643405     1  0.0000      0.685 1.000  0 0.000
#> SRR1643406     1  0.0000      0.685 1.000  0 0.000
#> SRR1643407     1  0.0000      0.685 1.000  0 0.000
#> SRR1643408     1  0.0000      0.685 1.000  0 0.000
#> SRR1643409     1  0.0000      0.685 1.000  0 0.000
#> SRR1643410     1  0.0747      0.663 0.984  0 0.016
#> SRR1643411     1  0.0000      0.685 1.000  0 0.000
#> SRR1643412     1  0.1031      0.650 0.976  0 0.024
#> SRR1643413     1  0.0000      0.685 1.000  0 0.000
#> SRR1643414     1  0.0000      0.685 1.000  0 0.000
#> SRR1643415     1  0.0000      0.685 1.000  0 0.000
#> SRR1643416     1  0.0000      0.685 1.000  0 0.000
#> SRR1643417     1  0.0000      0.685 1.000  0 0.000
#> SRR1643418     1  0.6095      0.743 0.608  0 0.392
#> SRR1643419     1  0.6095      0.743 0.608  0 0.392
#> SRR1643420     1  0.6095      0.743 0.608  0 0.392
#> SRR1643421     1  0.6095      0.743 0.608  0 0.392
#> SRR1643422     1  0.6095      0.743 0.608  0 0.392
#> SRR1643423     1  0.6095      0.743 0.608  0 0.392
#> SRR1643424     1  0.6095      0.743 0.608  0 0.392
#> SRR1643425     1  0.6095      0.743 0.608  0 0.392
#> SRR1643426     1  0.6095      0.743 0.608  0 0.392
#> SRR1643427     1  0.6095      0.743 0.608  0 0.392
#> SRR1643428     1  0.6095      0.743 0.608  0 0.392
#> SRR1643429     1  0.6095      0.743 0.608  0 0.392
#> SRR1643430     1  0.6095      0.743 0.608  0 0.392
#> SRR1643431     1  0.6095      0.743 0.608  0 0.392
#> SRR1643432     1  0.6095      0.743 0.608  0 0.392
#> SRR1643433     1  0.6095      0.743 0.608  0 0.392
#> SRR1643434     1  0.6095      0.743 0.608  0 0.392
#> SRR1643435     1  0.6095      0.743 0.608  0 0.392
#> SRR1643436     1  0.6095      0.743 0.608  0 0.392
#> SRR1643437     1  0.6095      0.743 0.608  0 0.392
#> SRR1643438     1  0.6095      0.743 0.608  0 0.392
#> SRR1643439     1  0.6095      0.743 0.608  0 0.392
#> SRR1643440     1  0.6095      0.743 0.608  0 0.392
#> SRR1643441     1  0.6095      0.743 0.608  0 0.392
#> SRR1643442     1  0.6095      0.743 0.608  0 0.392
#> SRR1643443     2  0.0000      1.000 0.000  1 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1 0.000
#> SRR1643505     2  0.0000      1.000 0.000  1 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1 0.000

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1 p2    p3    p4
#> SRR1643167     1  0.0000      0.922 1.000  0 0.000 0.000
#> SRR1643168     1  0.0000      0.922 1.000  0 0.000 0.000
#> SRR1643169     1  0.0000      0.922 1.000  0 0.000 0.000
#> SRR1643170     1  0.0000      0.922 1.000  0 0.000 0.000
#> SRR1643171     1  0.0000      0.922 1.000  0 0.000 0.000
#> SRR1643172     1  0.0000      0.922 1.000  0 0.000 0.000
#> SRR1643173     1  0.0000      0.922 1.000  0 0.000 0.000
#> SRR1643174     1  0.0000      0.922 1.000  0 0.000 0.000
#> SRR1643175     4  0.4134      0.642 0.260  0 0.000 0.740
#> SRR1643176     4  0.3975      0.679 0.240  0 0.000 0.760
#> SRR1643177     4  0.4072      0.671 0.252  0 0.000 0.748
#> SRR1643178     4  0.4164      0.636 0.264  0 0.000 0.736
#> SRR1643180     1  0.0188      0.922 0.996  0 0.000 0.004
#> SRR1643181     1  0.0000      0.922 1.000  0 0.000 0.000
#> SRR1643182     1  0.0000      0.922 1.000  0 0.000 0.000
#> SRR1643183     1  0.0000      0.922 1.000  0 0.000 0.000
#> SRR1643184     1  0.0188      0.922 0.996  0 0.000 0.004
#> SRR1643185     1  0.0188      0.922 0.996  0 0.000 0.004
#> SRR1643186     1  0.0188      0.922 0.996  0 0.000 0.004
#> SRR1643187     1  0.3123      0.826 0.844  0 0.000 0.156
#> SRR1643188     1  0.2814      0.853 0.868  0 0.000 0.132
#> SRR1643189     1  0.3074      0.830 0.848  0 0.000 0.152
#> SRR1643190     1  0.2814      0.853 0.868  0 0.000 0.132
#> SRR1643191     1  0.0000      0.922 1.000  0 0.000 0.000
#> SRR1643192     1  0.0000      0.922 1.000  0 0.000 0.000
#> SRR1643193     1  0.1389      0.921 0.952  0 0.000 0.048
#> SRR1643194     1  0.1389      0.921 0.952  0 0.000 0.048
#> SRR1643195     4  0.1389      0.923 0.048  0 0.000 0.952
#> SRR1643196     4  0.1389      0.923 0.048  0 0.000 0.952
#> SRR1643197     1  0.1716      0.944 0.936  0 0.000 0.064
#> SRR1643198     1  0.2011      0.934 0.920  0 0.000 0.080
#> SRR1643199     1  0.0336      0.923 0.992  0 0.000 0.008
#> SRR1643200     1  0.0336      0.923 0.992  0 0.000 0.008
#> SRR1643201     4  0.4776      0.423 0.376  0 0.000 0.624
#> SRR1643202     4  0.4830      0.379 0.392  0 0.000 0.608
#> SRR1643203     1  0.1118      0.924 0.964  0 0.000 0.036
#> SRR1643204     1  0.1211      0.923 0.960  0 0.000 0.040
#> SRR1643205     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643206     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643207     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643208     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643209     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643210     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643211     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643212     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643213     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643214     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643215     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643216     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643217     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643218     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643219     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643220     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643221     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643222     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643223     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643224     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643225     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643226     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643227     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643228     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643229     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643230     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643231     3  0.0336      0.991 0.008  0 0.992 0.000
#> SRR1643232     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643233     3  0.0707      0.979 0.020  0 0.980 0.000
#> SRR1643234     3  0.0707      0.979 0.020  0 0.980 0.000
#> SRR1643235     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643236     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643237     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643238     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643239     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643240     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643241     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643242     1  0.4564      0.550 0.672  0 0.328 0.000
#> SRR1643243     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643245     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643246     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643247     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643248     3  0.0000      0.999 0.000  0 1.000 0.000
#> SRR1643249     1  0.1936      0.907 0.940  0 0.032 0.028
#> SRR1643250     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643251     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643252     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643253     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643254     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643255     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643256     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643257     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643258     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643259     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643260     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643261     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643262     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643263     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643264     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643266     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643267     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643268     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643269     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643270     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643271     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643272     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643273     1  0.2011      0.937 0.920  0 0.000 0.080
#> SRR1643274     1  0.2081      0.935 0.916  0 0.000 0.084
#> SRR1643275     1  0.2149      0.932 0.912  0 0.000 0.088
#> SRR1643276     1  0.2149      0.932 0.912  0 0.000 0.088
#> SRR1643277     1  0.2149      0.932 0.912  0 0.000 0.088
#> SRR1643278     1  0.1940      0.939 0.924  0 0.000 0.076
#> SRR1643279     1  0.2281      0.927 0.904  0 0.000 0.096
#> SRR1643280     1  0.2281      0.927 0.904  0 0.000 0.096
#> SRR1643281     1  0.2081      0.935 0.916  0 0.000 0.084
#> SRR1643282     1  0.2149      0.933 0.912  0 0.000 0.088
#> SRR1643283     1  0.2216      0.930 0.908  0 0.000 0.092
#> SRR1643284     1  0.2081      0.935 0.916  0 0.000 0.084
#> SRR1643285     1  0.2149      0.932 0.912  0 0.000 0.088
#> SRR1643286     1  0.2149      0.932 0.912  0 0.000 0.088
#> SRR1643287     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643288     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643289     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643290     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643291     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643292     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643293     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643294     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643295     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643296     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643297     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643298     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643299     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643300     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643301     1  0.3688      0.816 0.792  0 0.000 0.208
#> SRR1643302     1  0.2589      0.911 0.884  0 0.000 0.116
#> SRR1643303     1  0.3569      0.831 0.804  0 0.000 0.196
#> SRR1643304     1  0.3569      0.831 0.804  0 0.000 0.196
#> SRR1643305     1  0.4304      0.703 0.716  0 0.000 0.284
#> SRR1643306     1  0.4661      0.579 0.652  0 0.000 0.348
#> SRR1643307     1  0.2921      0.889 0.860  0 0.000 0.140
#> SRR1643308     1  0.3219      0.866 0.836  0 0.000 0.164
#> SRR1643309     1  0.3569      0.830 0.804  0 0.000 0.196
#> SRR1643310     4  0.4933      0.127 0.432  0 0.000 0.568
#> SRR1643311     1  0.4585      0.611 0.668  0 0.000 0.332
#> SRR1643312     1  0.3311      0.858 0.828  0 0.000 0.172
#> SRR1643313     1  0.3688      0.814 0.792  0 0.000 0.208
#> SRR1643314     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643315     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643316     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643317     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643318     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643319     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643320     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643321     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643322     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643323     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643324     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643325     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643326     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643327     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643328     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643329     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643330     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643331     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643332     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643333     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643334     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643335     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643336     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643337     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643338     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643339     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643340     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643341     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643342     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643343     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643344     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643345     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643346     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643347     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643348     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643349     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643350     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643351     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643352     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643353     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643354     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643355     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643356     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643357     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643358     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643359     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643360     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643361     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643362     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643363     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643364     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643365     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643366     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643367     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643368     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643369     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643370     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643371     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643372     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643373     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643374     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643375     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643376     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643377     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643378     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643379     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643380     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643381     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643382     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643383     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643384     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643385     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643386     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643387     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643388     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643389     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643390     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643391     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643392     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643393     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643394     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643395     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643396     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643397     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643398     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643399     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643400     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643401     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643402     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643403     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643404     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643405     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643406     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643407     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643408     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643409     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643410     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643411     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643412     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643413     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643414     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643415     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643416     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643417     1  0.1389      0.951 0.952  0 0.000 0.048
#> SRR1643418     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643419     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643420     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643421     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643422     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643423     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643424     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643425     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643426     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643427     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643428     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643429     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643430     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643431     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643432     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643433     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643434     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643435     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643436     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643437     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643438     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643439     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643440     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643441     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643442     4  0.0000      0.977 0.000  0 0.000 1.000
#> SRR1643443     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643444     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643445     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643446     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643447     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643448     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643449     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643450     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643451     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643452     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643453     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643454     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643455     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643456     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643457     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643458     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643459     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643460     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643461     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643462     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643463     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643464     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643466     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643467     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643468     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643469     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643470     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643471     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643472     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643473     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643474     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643475     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643477     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643478     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643479     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643480     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643481     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643482     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643483     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643484     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643485     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643486     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643487     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643488     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643489     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643490     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643491     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643492     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643493     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643494     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643495     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643496     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643497     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643498     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643499     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643500     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643501     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643502     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643503     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643504     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643505     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643506     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643507     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643508     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643509     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643510     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643511     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643512     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643513     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643531     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643532     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643533     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643534     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643535     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643536     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643537     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643538     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643539     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643540     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643541     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643542     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643543     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643544     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643514     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643515     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643516     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643517     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643518     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643519     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643520     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643521     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643522     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643523     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643524     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643525     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643526     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643527     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643528     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643529     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643530     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643545     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643546     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643547     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643548     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643549     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643550     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643551     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643552     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643553     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643554     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643555     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643556     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643558     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643559     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643560     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643561     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643562     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643563     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643564     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643565     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643566     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643567     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643568     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643569     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643570     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643571     2  0.0000      1.000 0.000  1 0.000 0.000
#> SRR1643572     2  0.0000      1.000 0.000  1 0.000 0.000

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1    p2    p3    p4    p5
#> SRR1643167     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643168     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643169     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643170     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643171     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643172     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643173     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643174     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643175     4  0.3395      0.634 0.236 0.000 0.000 0.764 0.000
#> SRR1643176     4  0.3177      0.683 0.208 0.000 0.000 0.792 0.000
#> SRR1643177     4  0.3109      0.693 0.200 0.000 0.000 0.800 0.000
#> SRR1643178     4  0.3395      0.634 0.236 0.000 0.000 0.764 0.000
#> SRR1643180     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643181     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643182     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643183     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643184     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643185     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643186     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643187     5  0.3266      0.957 0.200 0.000 0.000 0.004 0.796
#> SRR1643188     5  0.3266      0.957 0.200 0.000 0.000 0.004 0.796
#> SRR1643189     5  0.3266      0.957 0.200 0.000 0.000 0.004 0.796
#> SRR1643190     5  0.3266      0.957 0.200 0.000 0.000 0.004 0.796
#> SRR1643191     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643192     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643193     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643194     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643195     5  0.3143      0.644 0.000 0.000 0.000 0.204 0.796
#> SRR1643196     5  0.3143      0.644 0.000 0.000 0.000 0.204 0.796
#> SRR1643197     1  0.1648      0.907 0.940 0.000 0.000 0.040 0.020
#> SRR1643198     1  0.1907      0.895 0.928 0.000 0.000 0.044 0.028
#> SRR1643199     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643200     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643201     5  0.3868      0.877 0.140 0.000 0.000 0.060 0.800
#> SRR1643202     5  0.3764      0.901 0.156 0.000 0.000 0.044 0.800
#> SRR1643203     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643204     5  0.3143      0.960 0.204 0.000 0.000 0.000 0.796
#> SRR1643205     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643206     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643207     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643208     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643209     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643210     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643211     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643212     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643213     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643214     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643215     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643216     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643217     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643218     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643219     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643220     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643221     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643222     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643223     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643224     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643225     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643226     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643227     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643228     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643229     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643230     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643231     3  0.0290      0.988 0.008 0.000 0.992 0.000 0.000
#> SRR1643232     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643233     3  0.0609      0.971 0.020 0.000 0.980 0.000 0.000
#> SRR1643234     3  0.0609      0.971 0.020 0.000 0.980 0.000 0.000
#> SRR1643235     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643236     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643237     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643238     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643239     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643240     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643241     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643242     5  0.6599      0.579 0.264 0.000 0.272 0.000 0.464
#> SRR1643243     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643245     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643246     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643247     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643248     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000
#> SRR1643249     5  0.3109      0.957 0.200 0.000 0.000 0.000 0.800
#> SRR1643250     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643251     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643252     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643253     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643254     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643255     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643256     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643257     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643258     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643259     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643260     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643261     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643262     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643263     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643264     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643266     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643267     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643268     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643269     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643270     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643271     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643272     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643273     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643274     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643275     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643276     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643277     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643278     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643279     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643280     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643281     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643282     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643283     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643284     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643285     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643286     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643287     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643288     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643289     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643290     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643291     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643292     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643293     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643294     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643295     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643296     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643297     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643298     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643299     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643300     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643301     1  0.2471      0.785 0.864 0.000 0.000 0.136 0.000
#> SRR1643302     1  0.1121      0.916 0.956 0.000 0.000 0.044 0.000
#> SRR1643303     1  0.2424      0.793 0.868 0.000 0.000 0.132 0.000
#> SRR1643304     1  0.2732      0.744 0.840 0.000 0.000 0.160 0.000
#> SRR1643305     1  0.3452      0.590 0.756 0.000 0.000 0.244 0.000
#> SRR1643306     1  0.3983      0.413 0.660 0.000 0.000 0.340 0.000
#> SRR1643307     1  0.1121      0.916 0.956 0.000 0.000 0.044 0.000
#> SRR1643308     1  0.2471      0.785 0.864 0.000 0.000 0.136 0.000
#> SRR1643309     1  0.2230      0.817 0.884 0.000 0.000 0.116 0.000
#> SRR1643310     4  0.4283      0.119 0.456 0.000 0.000 0.544 0.000
#> SRR1643311     1  0.3684      0.529 0.720 0.000 0.000 0.280 0.000
#> SRR1643312     1  0.2516      0.780 0.860 0.000 0.000 0.140 0.000
#> SRR1643313     1  0.2179      0.824 0.888 0.000 0.000 0.112 0.000
#> SRR1643314     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643315     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643316     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643317     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643318     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643319     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643320     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643321     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643322     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643323     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643324     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643325     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643326     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643327     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643328     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643329     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643330     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643331     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643332     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643333     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643334     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643335     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643336     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643337     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643338     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643339     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643340     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643341     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643342     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643343     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643344     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643345     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643346     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643347     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643348     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643349     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643350     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643351     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643352     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643353     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643354     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643355     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643356     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643357     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643358     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643359     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643360     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643361     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643362     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643363     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643364     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643365     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643366     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643367     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643368     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643369     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643370     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643371     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643372     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643373     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643374     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643375     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643376     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643377     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643378     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643379     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643380     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643381     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643382     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643383     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643384     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643385     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643386     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643387     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643388     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643389     4  0.0000      0.985 0.000 0.000 0.000 1.000 0.000
#> SRR1643390     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643391     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643392     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643393     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643394     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643395     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643396     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643397     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643398     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643399     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643400     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643401     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643402     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643403     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643404     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643405     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643406     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643407     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643408     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643409     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643410     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643411     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643412     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643413     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643414     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643415     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643416     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643417     1  0.0162      0.963 0.996 0.000 0.000 0.004 0.000
#> SRR1643418     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643419     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643420     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643421     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643422     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643423     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643424     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643425     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643426     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643427     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643428     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643429     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643430     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643431     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643432     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643433     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643434     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643435     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643436     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643437     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643438     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643439     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643440     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643441     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643442     4  0.0162      0.983 0.000 0.000 0.000 0.996 0.004
#> SRR1643443     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643444     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643445     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643446     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643447     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643448     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643449     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643450     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643451     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643452     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643453     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643454     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643455     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643456     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643457     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643458     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643459     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643460     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643461     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643462     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643463     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643464     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643466     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643467     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643468     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643469     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643470     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643471     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643472     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643473     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643474     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643475     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643477     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643478     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643479     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643480     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643481     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643482     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643483     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643484     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643485     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643486     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643487     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643488     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643489     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643490     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643491     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643492     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643493     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643494     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643495     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643496     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643497     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643498     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643499     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643500     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643501     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643502     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643503     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643504     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643505     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643506     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643507     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643508     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643509     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643510     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643511     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643512     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643513     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643531     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643532     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643533     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643534     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643535     2  0.3086      0.901 0.004 0.816 0.000 0.000 0.180
#> SRR1643536     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643537     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643538     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643539     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643540     2  0.3086      0.901 0.004 0.816 0.000 0.000 0.180
#> SRR1643541     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643542     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643543     2  0.3086      0.901 0.004 0.816 0.000 0.000 0.180
#> SRR1643544     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643514     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643515     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643516     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643517     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643518     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643519     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643520     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643521     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643522     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643523     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643524     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643525     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643526     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643527     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643528     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643529     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643530     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643545     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643546     2  0.0162      0.913 0.000 0.996 0.000 0.000 0.004
#> SRR1643547     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643548     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643549     2  0.0162      0.912 0.000 0.996 0.000 0.000 0.004
#> SRR1643550     2  0.3123      0.900 0.004 0.812 0.000 0.000 0.184
#> SRR1643551     2  0.0404      0.912 0.000 0.988 0.000 0.000 0.012
#> SRR1643552     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643553     2  0.0290      0.912 0.000 0.992 0.000 0.000 0.008
#> SRR1643554     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643555     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643556     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643558     2  0.0000      0.913 0.000 1.000 0.000 0.000 0.000
#> SRR1643559     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643560     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643561     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643562     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643563     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643564     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643565     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643566     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643567     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643568     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643569     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643570     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643571     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200
#> SRR1643572     2  0.3266      0.895 0.004 0.796 0.000 0.000 0.200

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2    p3    p4    p5    p6
#> SRR1643167     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643168     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643169     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643170     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643171     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643172     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643173     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643174     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643175     4  0.3200      0.726 0.196 0.000 0.000 0.788 0.016 0.000
#> SRR1643176     4  0.3104      0.744 0.184 0.000 0.000 0.800 0.016 0.000
#> SRR1643177     4  0.2932      0.772 0.164 0.000 0.000 0.820 0.016 0.000
#> SRR1643178     4  0.3231      0.720 0.200 0.000 0.000 0.784 0.016 0.000
#> SRR1643180     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643181     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643182     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643183     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643184     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643185     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643186     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643187     5  0.2191      0.963 0.120 0.000 0.000 0.004 0.876 0.000
#> SRR1643188     5  0.2191      0.963 0.120 0.000 0.000 0.004 0.876 0.000
#> SRR1643189     5  0.2191      0.963 0.120 0.000 0.000 0.004 0.876 0.000
#> SRR1643190     5  0.2191      0.963 0.120 0.000 0.000 0.004 0.876 0.000
#> SRR1643191     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643192     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643193     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643194     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643195     5  0.2092      0.797 0.000 0.000 0.000 0.124 0.876 0.000
#> SRR1643196     5  0.2092      0.797 0.000 0.000 0.000 0.124 0.876 0.000
#> SRR1643197     1  0.2001      0.885 0.912 0.000 0.000 0.040 0.048 0.000
#> SRR1643198     1  0.2197      0.871 0.900 0.000 0.000 0.044 0.056 0.000
#> SRR1643199     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643200     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643201     5  0.1765      0.895 0.052 0.000 0.000 0.024 0.924 0.000
#> SRR1643202     5  0.1950      0.908 0.064 0.000 0.000 0.024 0.912 0.000
#> SRR1643203     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643204     5  0.2092      0.967 0.124 0.000 0.000 0.000 0.876 0.000
#> SRR1643205     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643206     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643207     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643208     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643209     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643210     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643211     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643212     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643213     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643214     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643215     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643216     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643217     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643218     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643219     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643220     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643221     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643222     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643223     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643224     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643225     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643226     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643227     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643228     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643229     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643230     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643231     3  0.0363      0.983 0.012 0.000 0.988 0.000 0.000 0.000
#> SRR1643232     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643233     3  0.0547      0.971 0.020 0.000 0.980 0.000 0.000 0.000
#> SRR1643234     3  0.0547      0.971 0.020 0.000 0.980 0.000 0.000 0.000
#> SRR1643235     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643236     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643237     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643238     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643239     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643240     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643241     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643242     5  0.5655      0.553 0.200 0.000 0.272 0.000 0.528 0.000
#> SRR1643243     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643245     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643246     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643247     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643248     3  0.0000      0.998 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643249     5  0.0632      0.855 0.024 0.000 0.000 0.000 0.976 0.000
#> SRR1643250     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643251     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643252     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643253     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643254     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643255     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643256     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643257     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643258     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643259     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643260     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643261     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643262     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643263     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643264     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643266     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643267     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643268     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643269     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643270     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643271     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643272     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643273     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643274     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643275     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643276     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643277     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643278     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643279     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643280     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643281     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643282     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643283     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643284     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643285     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643286     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643287     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643288     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643289     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643290     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643291     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643292     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643293     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643294     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643295     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643296     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643297     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643298     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643299     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643300     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643301     1  0.2219      0.799 0.864 0.000 0.000 0.136 0.000 0.000
#> SRR1643302     1  0.1075      0.914 0.952 0.000 0.000 0.048 0.000 0.000
#> SRR1643303     1  0.2219      0.802 0.864 0.000 0.000 0.136 0.000 0.000
#> SRR1643304     1  0.2454      0.763 0.840 0.000 0.000 0.160 0.000 0.000
#> SRR1643305     1  0.3221      0.593 0.736 0.000 0.000 0.264 0.000 0.000
#> SRR1643306     1  0.3607      0.451 0.652 0.000 0.000 0.348 0.000 0.000
#> SRR1643307     1  0.1007      0.917 0.956 0.000 0.000 0.044 0.000 0.000
#> SRR1643308     1  0.2260      0.795 0.860 0.000 0.000 0.140 0.000 0.000
#> SRR1643309     1  0.2003      0.829 0.884 0.000 0.000 0.116 0.000 0.000
#> SRR1643310     4  0.3851      0.115 0.460 0.000 0.000 0.540 0.000 0.000
#> SRR1643311     1  0.3244      0.592 0.732 0.000 0.000 0.268 0.000 0.000
#> SRR1643312     1  0.2219      0.801 0.864 0.000 0.000 0.136 0.000 0.000
#> SRR1643313     1  0.1957      0.837 0.888 0.000 0.000 0.112 0.000 0.000
#> SRR1643314     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643315     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643316     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643317     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643318     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643319     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643320     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643321     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643322     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643323     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643324     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643325     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643326     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643327     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643328     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643329     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643330     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643331     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643332     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643333     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643334     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643335     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643336     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643337     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643338     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643339     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643340     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643341     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643342     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643343     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643344     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643345     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643346     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643347     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643348     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643349     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643350     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643351     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643352     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643353     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643354     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643355     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643356     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643357     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643358     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643359     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643360     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643361     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643362     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643363     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643364     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643365     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643366     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643367     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643368     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643369     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643370     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643371     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643372     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643373     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643374     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643375     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643376     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643377     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643378     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643379     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643380     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643381     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643382     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643383     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643384     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643385     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643386     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643387     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643388     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643389     4  0.0000      0.962 0.000 0.000 0.000 1.000 0.000 0.000
#> SRR1643390     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643391     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643392     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643393     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643394     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643395     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643396     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643397     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643398     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643399     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643400     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643401     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643402     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643403     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643404     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643405     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643406     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643407     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643408     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643409     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643410     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643411     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643412     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643413     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643414     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643415     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643416     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643417     1  0.0000      0.965 1.000 0.000 0.000 0.000 0.000 0.000
#> SRR1643418     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643419     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643420     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643421     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643422     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643423     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643424     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643425     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643426     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643427     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643428     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643429     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643430     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643431     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643432     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643433     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643434     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643435     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643436     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643437     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643438     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643439     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643440     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643441     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643442     4  0.2092      0.899 0.000 0.000 0.000 0.876 0.124 0.000
#> SRR1643443     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643444     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643445     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643446     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643447     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643448     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643449     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643450     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643451     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643452     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643453     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643454     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643455     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643456     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643457     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643458     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643459     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643460     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643461     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643462     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643463     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643464     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643466     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643467     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643468     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643469     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643470     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643471     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643472     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643473     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643474     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643475     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643477     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643478     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643479     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643480     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643481     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643482     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643483     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643484     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643485     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643486     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643487     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643488     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643489     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643490     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643491     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643492     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643493     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643494     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643495     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643496     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643497     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643498     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643499     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643500     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643501     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643502     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643503     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643504     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643505     6  0.1957      0.906 0.000 0.112 0.000 0.000 0.000 0.888
#> SRR1643506     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643507     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643508     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643509     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643510     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643511     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643512     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643513     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643531     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643532     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643533     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643534     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643535     6  0.1610      0.940 0.000 0.084 0.000 0.000 0.000 0.916
#> SRR1643536     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643537     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643538     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643539     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643540     6  0.1610      0.940 0.000 0.084 0.000 0.000 0.000 0.916
#> SRR1643541     6  0.1610      0.940 0.000 0.084 0.000 0.000 0.000 0.916
#> SRR1643542     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643543     6  0.1663      0.937 0.000 0.088 0.000 0.000 0.000 0.912
#> SRR1643544     6  0.1556      0.944 0.000 0.080 0.000 0.000 0.000 0.920
#> SRR1643514     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643515     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643516     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643517     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643518     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643519     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643520     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643521     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643522     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643523     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643524     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643525     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643526     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643527     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643528     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643529     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643530     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643545     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643546     2  0.0146      0.995 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643547     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643548     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643549     2  0.0146      0.995 0.000 0.996 0.000 0.000 0.000 0.004
#> SRR1643550     6  0.3390      0.654 0.000 0.296 0.000 0.000 0.000 0.704
#> SRR1643551     2  0.0363      0.987 0.000 0.988 0.000 0.000 0.000 0.012
#> SRR1643552     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643553     2  0.0260      0.991 0.000 0.992 0.000 0.000 0.000 0.008
#> SRR1643554     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643555     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643556     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643558     2  0.0000      1.000 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643559     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643560     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643561     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643562     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643563     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643564     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643565     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643566     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643567     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643568     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643569     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643570     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643571     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000
#> SRR1643572     6  0.0000      0.948 0.000 0.000 0.000 0.000 0.000 1.000

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-ATC-pam-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-ATC-pam-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-ATC-pam-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-ATC-pam-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-ATC-pam-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-ATC-pam-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-ATC-pam-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-ATC-pam-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-ATC-pam-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-ATC-pam-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-ATC-pam-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-ATC-pam-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-ATC-pam-get-signatures-3

get_signatures(res, k = 5)

plot of chunk tab-ATC-pam-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-ATC-pam-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-ATC-pam-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-ATC-pam-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-ATC-pam-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)

plot of chunk tab-ATC-pam-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-ATC-pam-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk ATC-pam-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-ATC-pam-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-ATC-pam-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-ATC-pam-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-ATC-pam-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-ATC-pam-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk ATC-pam-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


ATC:mclust*

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["ATC", "mclust"]
# you can also extract it by
# res = res_list["ATC:mclust"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'ATC' method.
#>   Subgroups are detected by 'mclust' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 3.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk ATC-mclust-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk ATC-mclust-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 0.804           0.890       0.949         0.4654 0.509   0.509
#> 3 3 0.911           0.882       0.933         0.2884 0.847   0.708
#> 4 4 0.826           0.888       0.889         0.1490 0.902   0.747
#> 5 5 0.739           0.867       0.822         0.0634 0.983   0.941
#> 6 6 0.737           0.779       0.828         0.0527 0.975   0.911

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 3

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette   p1   p2
#> SRR1643167     1   0.995      1.000 0.54 0.46
#> SRR1643168     1   0.995      1.000 0.54 0.46
#> SRR1643169     1   0.995      1.000 0.54 0.46
#> SRR1643170     1   0.995      1.000 0.54 0.46
#> SRR1643171     1   0.995      1.000 0.54 0.46
#> SRR1643172     1   0.995      1.000 0.54 0.46
#> SRR1643173     1   0.995      1.000 0.54 0.46
#> SRR1643174     1   0.995      1.000 0.54 0.46
#> SRR1643175     1   0.995      1.000 0.54 0.46
#> SRR1643176     1   0.995      1.000 0.54 0.46
#> SRR1643177     1   0.995      1.000 0.54 0.46
#> SRR1643178     1   0.995      1.000 0.54 0.46
#> SRR1643180     1   0.995      1.000 0.54 0.46
#> SRR1643181     1   0.995      1.000 0.54 0.46
#> SRR1643182     1   0.995      1.000 0.54 0.46
#> SRR1643183     1   0.995      1.000 0.54 0.46
#> SRR1643184     1   0.995      1.000 0.54 0.46
#> SRR1643185     1   0.995      1.000 0.54 0.46
#> SRR1643186     1   0.995      1.000 0.54 0.46
#> SRR1643187     1   0.995      1.000 0.54 0.46
#> SRR1643188     1   0.995      1.000 0.54 0.46
#> SRR1643189     1   0.995      1.000 0.54 0.46
#> SRR1643190     1   0.995      1.000 0.54 0.46
#> SRR1643191     1   0.995      1.000 0.54 0.46
#> SRR1643192     1   0.995      1.000 0.54 0.46
#> SRR1643193     1   0.995      1.000 0.54 0.46
#> SRR1643194     1   0.995      1.000 0.54 0.46
#> SRR1643195     1   0.995      1.000 0.54 0.46
#> SRR1643196     1   0.995      1.000 0.54 0.46
#> SRR1643197     1   0.995      1.000 0.54 0.46
#> SRR1643198     1   0.995      1.000 0.54 0.46
#> SRR1643199     1   0.995      1.000 0.54 0.46
#> SRR1643200     1   0.995      1.000 0.54 0.46
#> SRR1643201     1   0.995      1.000 0.54 0.46
#> SRR1643202     1   0.995      1.000 0.54 0.46
#> SRR1643203     1   0.995      1.000 0.54 0.46
#> SRR1643204     1   0.995      1.000 0.54 0.46
#> SRR1643205     2   0.000      0.364 0.00 1.00
#> SRR1643206     2   0.000      0.364 0.00 1.00
#> SRR1643207     2   0.000      0.364 0.00 1.00
#> SRR1643208     2   0.000      0.364 0.00 1.00
#> SRR1643209     2   0.000      0.364 0.00 1.00
#> SRR1643210     2   0.000      0.364 0.00 1.00
#> SRR1643211     2   0.000      0.364 0.00 1.00
#> SRR1643212     2   0.000      0.364 0.00 1.00
#> SRR1643213     2   0.000      0.364 0.00 1.00
#> SRR1643214     2   0.000      0.364 0.00 1.00
#> SRR1643215     2   0.000      0.364 0.00 1.00
#> SRR1643216     2   0.000      0.364 0.00 1.00
#> SRR1643217     2   0.000      0.364 0.00 1.00
#> SRR1643218     2   0.000      0.364 0.00 1.00
#> SRR1643219     2   0.000      0.364 0.00 1.00
#> SRR1643220     2   0.000      0.364 0.00 1.00
#> SRR1643221     2   0.000      0.364 0.00 1.00
#> SRR1643222     2   0.000      0.364 0.00 1.00
#> SRR1643223     2   0.000      0.364 0.00 1.00
#> SRR1643224     2   0.000      0.364 0.00 1.00
#> SRR1643225     2   0.000      0.364 0.00 1.00
#> SRR1643226     2   0.000      0.364 0.00 1.00
#> SRR1643227     2   0.000      0.364 0.00 1.00
#> SRR1643228     2   0.000      0.364 0.00 1.00
#> SRR1643229     2   0.000      0.364 0.00 1.00
#> SRR1643230     2   0.000      0.364 0.00 1.00
#> SRR1643231     2   0.000      0.364 0.00 1.00
#> SRR1643232     2   0.000      0.364 0.00 1.00
#> SRR1643233     2   0.000      0.364 0.00 1.00
#> SRR1643234     2   0.000      0.364 0.00 1.00
#> SRR1643235     2   0.000      0.364 0.00 1.00
#> SRR1643236     2   0.000      0.364 0.00 1.00
#> SRR1643237     2   0.000      0.364 0.00 1.00
#> SRR1643238     2   0.000      0.364 0.00 1.00
#> SRR1643239     2   0.000      0.364 0.00 1.00
#> SRR1643240     2   0.000      0.364 0.00 1.00
#> SRR1643241     2   0.000      0.364 0.00 1.00
#> SRR1643242     2   0.000      0.364 0.00 1.00
#> SRR1643243     2   0.000      0.364 0.00 1.00
#> SRR1643245     2   0.000      0.364 0.00 1.00
#> SRR1643246     2   0.000      0.364 0.00 1.00
#> SRR1643247     2   0.000      0.364 0.00 1.00
#> SRR1643248     2   0.000      0.364 0.00 1.00
#> SRR1643249     2   0.000      0.364 0.00 1.00
#> SRR1643250     1   0.995      1.000 0.54 0.46
#> SRR1643251     1   0.995      1.000 0.54 0.46
#> SRR1643252     1   0.995      1.000 0.54 0.46
#> SRR1643253     1   0.995      1.000 0.54 0.46
#> SRR1643254     1   0.995      1.000 0.54 0.46
#> SRR1643255     1   0.995      1.000 0.54 0.46
#> SRR1643256     1   0.995      1.000 0.54 0.46
#> SRR1643257     1   0.995      1.000 0.54 0.46
#> SRR1643258     1   0.995      1.000 0.54 0.46
#> SRR1643259     1   0.995      1.000 0.54 0.46
#> SRR1643260     1   0.995      1.000 0.54 0.46
#> SRR1643261     1   0.995      1.000 0.54 0.46
#> SRR1643262     1   0.995      1.000 0.54 0.46
#> SRR1643263     1   0.995      1.000 0.54 0.46
#> SRR1643264     1   0.995      1.000 0.54 0.46
#> SRR1643266     1   0.995      1.000 0.54 0.46
#> SRR1643267     1   0.995      1.000 0.54 0.46
#> SRR1643268     1   0.995      1.000 0.54 0.46
#> SRR1643269     1   0.995      1.000 0.54 0.46
#> SRR1643270     1   0.995      1.000 0.54 0.46
#> SRR1643271     1   0.995      1.000 0.54 0.46
#> SRR1643272     1   0.995      1.000 0.54 0.46
#> SRR1643273     1   0.995      1.000 0.54 0.46
#> SRR1643274     1   0.995      1.000 0.54 0.46
#> SRR1643275     1   0.995      1.000 0.54 0.46
#> SRR1643276     1   0.995      1.000 0.54 0.46
#> SRR1643277     1   0.995      1.000 0.54 0.46
#> SRR1643278     1   0.995      1.000 0.54 0.46
#> SRR1643279     1   0.995      1.000 0.54 0.46
#> SRR1643280     1   0.995      1.000 0.54 0.46
#> SRR1643281     1   0.995      1.000 0.54 0.46
#> SRR1643282     1   0.995      1.000 0.54 0.46
#> SRR1643283     1   0.995      1.000 0.54 0.46
#> SRR1643284     1   0.995      1.000 0.54 0.46
#> SRR1643285     1   0.995      1.000 0.54 0.46
#> SRR1643286     1   0.995      1.000 0.54 0.46
#> SRR1643287     1   0.995      1.000 0.54 0.46
#> SRR1643288     1   0.995      1.000 0.54 0.46
#> SRR1643289     1   0.995      1.000 0.54 0.46
#> SRR1643290     1   0.995      1.000 0.54 0.46
#> SRR1643291     1   0.995      1.000 0.54 0.46
#> SRR1643292     1   0.995      1.000 0.54 0.46
#> SRR1643293     1   0.995      1.000 0.54 0.46
#> SRR1643294     1   0.995      1.000 0.54 0.46
#> SRR1643295     1   0.995      1.000 0.54 0.46
#> SRR1643296     1   0.995      1.000 0.54 0.46
#> SRR1643297     1   0.995      1.000 0.54 0.46
#> SRR1643298     1   0.995      1.000 0.54 0.46
#> SRR1643299     1   0.995      1.000 0.54 0.46
#> SRR1643300     1   0.995      1.000 0.54 0.46
#> SRR1643301     1   0.995      1.000 0.54 0.46
#> SRR1643302     1   0.995      1.000 0.54 0.46
#> SRR1643303     1   0.995      1.000 0.54 0.46
#> SRR1643304     1   0.995      1.000 0.54 0.46
#> SRR1643305     1   0.995      1.000 0.54 0.46
#> SRR1643306     1   0.995      1.000 0.54 0.46
#> SRR1643307     1   0.995      1.000 0.54 0.46
#> SRR1643308     1   0.995      1.000 0.54 0.46
#> SRR1643309     1   0.995      1.000 0.54 0.46
#> SRR1643310     1   0.995      1.000 0.54 0.46
#> SRR1643311     1   0.995      1.000 0.54 0.46
#> SRR1643312     1   0.995      1.000 0.54 0.46
#> SRR1643313     1   0.995      1.000 0.54 0.46
#> SRR1643314     1   0.995      1.000 0.54 0.46
#> SRR1643315     1   0.995      1.000 0.54 0.46
#> SRR1643316     1   0.995      1.000 0.54 0.46
#> SRR1643317     1   0.995      1.000 0.54 0.46
#> SRR1643318     1   0.995      1.000 0.54 0.46
#> SRR1643319     1   0.995      1.000 0.54 0.46
#> SRR1643320     1   0.995      1.000 0.54 0.46
#> SRR1643321     1   0.995      1.000 0.54 0.46
#> SRR1643322     1   0.995      1.000 0.54 0.46
#> SRR1643323     1   0.995      1.000 0.54 0.46
#> SRR1643324     1   0.995      1.000 0.54 0.46
#> SRR1643325     1   0.995      1.000 0.54 0.46
#> SRR1643326     1   0.995      1.000 0.54 0.46
#> SRR1643327     1   0.995      1.000 0.54 0.46
#> SRR1643328     1   0.995      1.000 0.54 0.46
#> SRR1643329     1   0.995      1.000 0.54 0.46
#> SRR1643330     1   0.995      1.000 0.54 0.46
#> SRR1643331     1   0.995      1.000 0.54 0.46
#> SRR1643332     1   0.995      1.000 0.54 0.46
#> SRR1643333     1   0.995      1.000 0.54 0.46
#> SRR1643334     1   0.995      1.000 0.54 0.46
#> SRR1643335     1   0.995      1.000 0.54 0.46
#> SRR1643336     1   0.995      1.000 0.54 0.46
#> SRR1643337     1   0.995      1.000 0.54 0.46
#> SRR1643338     1   0.995      1.000 0.54 0.46
#> SRR1643339     1   0.995      1.000 0.54 0.46
#> SRR1643340     1   0.995      1.000 0.54 0.46
#> SRR1643341     1   0.995      1.000 0.54 0.46
#> SRR1643342     1   0.995      1.000 0.54 0.46
#> SRR1643343     1   0.995      1.000 0.54 0.46
#> SRR1643344     1   0.995      1.000 0.54 0.46
#> SRR1643345     1   0.995      1.000 0.54 0.46
#> SRR1643346     1   0.995      1.000 0.54 0.46
#> SRR1643347     1   0.995      1.000 0.54 0.46
#> SRR1643348     1   0.995      1.000 0.54 0.46
#> SRR1643349     1   0.995      1.000 0.54 0.46
#> SRR1643350     1   0.995      1.000 0.54 0.46
#> SRR1643351     1   0.995      1.000 0.54 0.46
#> SRR1643352     1   0.995      1.000 0.54 0.46
#> SRR1643353     1   0.995      1.000 0.54 0.46
#> SRR1643354     1   0.995      1.000 0.54 0.46
#> SRR1643355     1   0.995      1.000 0.54 0.46
#> SRR1643356     1   0.995      1.000 0.54 0.46
#> SRR1643357     1   0.995      1.000 0.54 0.46
#> SRR1643358     1   0.995      1.000 0.54 0.46
#> SRR1643359     1   0.995      1.000 0.54 0.46
#> SRR1643360     1   0.995      1.000 0.54 0.46
#> SRR1643361     1   0.995      1.000 0.54 0.46
#> SRR1643362     1   0.995      1.000 0.54 0.46
#> SRR1643363     1   0.995      1.000 0.54 0.46
#> SRR1643364     1   0.995      1.000 0.54 0.46
#> SRR1643365     1   0.995      1.000 0.54 0.46
#> SRR1643366     1   0.995      1.000 0.54 0.46
#> SRR1643367     1   0.995      1.000 0.54 0.46
#> SRR1643368     1   0.995      1.000 0.54 0.46
#> SRR1643369     1   0.995      1.000 0.54 0.46
#> SRR1643370     1   0.995      1.000 0.54 0.46
#> SRR1643371     1   0.995      1.000 0.54 0.46
#> SRR1643372     1   0.995      1.000 0.54 0.46
#> SRR1643373     1   0.995      1.000 0.54 0.46
#> SRR1643374     1   0.995      1.000 0.54 0.46
#> SRR1643375     1   0.995      1.000 0.54 0.46
#> SRR1643376     1   0.995      1.000 0.54 0.46
#> SRR1643377     1   0.995      1.000 0.54 0.46
#> SRR1643378     1   0.995      1.000 0.54 0.46
#> SRR1643379     1   0.995      1.000 0.54 0.46
#> SRR1643380     1   0.995      1.000 0.54 0.46
#> SRR1643381     1   0.995      1.000 0.54 0.46
#> SRR1643382     1   0.995      1.000 0.54 0.46
#> SRR1643383     1   0.995      1.000 0.54 0.46
#> SRR1643384     1   0.995      1.000 0.54 0.46
#> SRR1643385     1   0.995      1.000 0.54 0.46
#> SRR1643386     1   0.995      1.000 0.54 0.46
#> SRR1643387     1   0.995      1.000 0.54 0.46
#> SRR1643388     1   0.995      1.000 0.54 0.46
#> SRR1643389     1   0.995      1.000 0.54 0.46
#> SRR1643390     1   0.995      1.000 0.54 0.46
#> SRR1643391     1   0.995      1.000 0.54 0.46
#> SRR1643392     1   0.995      1.000 0.54 0.46
#> SRR1643393     1   0.995      1.000 0.54 0.46
#> SRR1643394     1   0.995      1.000 0.54 0.46
#> SRR1643395     1   0.995      1.000 0.54 0.46
#> SRR1643396     1   0.995      1.000 0.54 0.46
#> SRR1643397     1   0.995      1.000 0.54 0.46
#> SRR1643398     1   0.995      1.000 0.54 0.46
#> SRR1643399     1   0.995      1.000 0.54 0.46
#> SRR1643400     1   0.995      1.000 0.54 0.46
#> SRR1643401     1   0.995      1.000 0.54 0.46
#> SRR1643402     1   0.995      1.000 0.54 0.46
#> SRR1643403     1   0.995      1.000 0.54 0.46
#> SRR1643404     1   0.995      1.000 0.54 0.46
#> SRR1643405     1   0.995      1.000 0.54 0.46
#> SRR1643406     1   0.995      1.000 0.54 0.46
#> SRR1643407     1   0.995      1.000 0.54 0.46
#> SRR1643408     1   0.995      1.000 0.54 0.46
#> SRR1643409     1   0.995      1.000 0.54 0.46
#> SRR1643410     1   0.995      1.000 0.54 0.46
#> SRR1643411     1   0.995      1.000 0.54 0.46
#> SRR1643412     1   0.995      1.000 0.54 0.46
#> SRR1643413     1   0.995      1.000 0.54 0.46
#> SRR1643414     1   0.995      1.000 0.54 0.46
#> SRR1643415     1   0.995      1.000 0.54 0.46
#> SRR1643416     1   0.995      1.000 0.54 0.46
#> SRR1643417     1   0.995      1.000 0.54 0.46
#> SRR1643418     1   0.995      1.000 0.54 0.46
#> SRR1643419     1   0.995      1.000 0.54 0.46
#> SRR1643420     1   0.995      1.000 0.54 0.46
#> SRR1643421     1   0.995      1.000 0.54 0.46
#> SRR1643422     1   0.995      1.000 0.54 0.46
#> SRR1643423     1   0.995      1.000 0.54 0.46
#> SRR1643424     1   0.995      1.000 0.54 0.46
#> SRR1643425     1   0.995      1.000 0.54 0.46
#> SRR1643426     1   0.995      1.000 0.54 0.46
#> SRR1643427     1   0.995      1.000 0.54 0.46
#> SRR1643428     1   0.995      1.000 0.54 0.46
#> SRR1643429     1   0.995      1.000 0.54 0.46
#> SRR1643430     1   0.995      1.000 0.54 0.46
#> SRR1643431     1   0.995      1.000 0.54 0.46
#> SRR1643432     1   0.995      1.000 0.54 0.46
#> SRR1643433     1   0.995      1.000 0.54 0.46
#> SRR1643434     1   0.995      1.000 0.54 0.46
#> SRR1643435     1   0.995      1.000 0.54 0.46
#> SRR1643436     1   0.995      1.000 0.54 0.46
#> SRR1643437     1   0.995      1.000 0.54 0.46
#> SRR1643438     1   0.995      1.000 0.54 0.46
#> SRR1643439     1   0.995      1.000 0.54 0.46
#> SRR1643440     1   0.995      1.000 0.54 0.46
#> SRR1643441     1   0.995      1.000 0.54 0.46
#> SRR1643442     1   0.995      1.000 0.54 0.46
#> SRR1643443     2   0.995      0.874 0.46 0.54
#> SRR1643444     2   0.995      0.874 0.46 0.54
#> SRR1643445     2   0.995      0.874 0.46 0.54
#> SRR1643446     2   0.995      0.874 0.46 0.54
#> SRR1643447     2   0.995      0.874 0.46 0.54
#> SRR1643448     2   0.995      0.874 0.46 0.54
#> SRR1643449     2   0.995      0.874 0.46 0.54
#> SRR1643450     2   0.995      0.874 0.46 0.54
#> SRR1643451     2   0.995      0.874 0.46 0.54
#> SRR1643452     2   0.995      0.874 0.46 0.54
#> SRR1643453     2   0.995      0.874 0.46 0.54
#> SRR1643454     2   0.995      0.874 0.46 0.54
#> SRR1643455     2   0.995      0.874 0.46 0.54
#> SRR1643456     2   0.995      0.874 0.46 0.54
#> SRR1643457     2   0.995      0.874 0.46 0.54
#> SRR1643458     2   0.995      0.874 0.46 0.54
#> SRR1643459     2   0.995      0.874 0.46 0.54
#> SRR1643460     2   0.995      0.874 0.46 0.54
#> SRR1643461     2   0.995      0.874 0.46 0.54
#> SRR1643462     2   0.995      0.874 0.46 0.54
#> SRR1643463     2   0.995      0.874 0.46 0.54
#> SRR1643464     2   0.995      0.874 0.46 0.54
#> SRR1643466     2   0.995      0.874 0.46 0.54
#> SRR1643467     2   0.995      0.874 0.46 0.54
#> SRR1643468     2   0.995      0.874 0.46 0.54
#> SRR1643469     2   0.995      0.874 0.46 0.54
#> SRR1643470     2   0.995      0.874 0.46 0.54
#> SRR1643471     2   0.995      0.874 0.46 0.54
#> SRR1643472     2   0.995      0.874 0.46 0.54
#> SRR1643473     2   0.995      0.874 0.46 0.54
#> SRR1643474     2   0.995      0.874 0.46 0.54
#> SRR1643475     2   0.995      0.874 0.46 0.54
#> SRR1643477     2   0.995      0.874 0.46 0.54
#> SRR1643478     2   0.995      0.874 0.46 0.54
#> SRR1643479     2   0.995      0.874 0.46 0.54
#> SRR1643480     2   0.995      0.874 0.46 0.54
#> SRR1643481     2   0.995      0.874 0.46 0.54
#> SRR1643482     2   0.995      0.874 0.46 0.54
#> SRR1643483     2   0.995      0.874 0.46 0.54
#> SRR1643484     2   0.995      0.874 0.46 0.54
#> SRR1643485     2   0.995      0.874 0.46 0.54
#> SRR1643486     2   0.995      0.874 0.46 0.54
#> SRR1643487     2   0.995      0.874 0.46 0.54
#> SRR1643488     2   0.995      0.874 0.46 0.54
#> SRR1643489     2   0.995      0.874 0.46 0.54
#> SRR1643490     2   0.995      0.874 0.46 0.54
#> SRR1643491     2   0.995      0.874 0.46 0.54
#> SRR1643492     2   0.995      0.874 0.46 0.54
#> SRR1643493     2   0.995      0.874 0.46 0.54
#> SRR1643494     2   0.995      0.874 0.46 0.54
#> SRR1643495     2   0.995      0.874 0.46 0.54
#> SRR1643496     2   0.995      0.874 0.46 0.54
#> SRR1643497     2   0.995      0.874 0.46 0.54
#> SRR1643498     2   0.995      0.874 0.46 0.54
#> SRR1643499     2   0.995      0.874 0.46 0.54
#> SRR1643500     2   0.995      0.874 0.46 0.54
#> SRR1643501     2   0.995      0.874 0.46 0.54
#> SRR1643502     2   0.995      0.874 0.46 0.54
#> SRR1643503     2   0.995      0.874 0.46 0.54
#> SRR1643504     2   0.995      0.874 0.46 0.54
#> SRR1643505     2   0.995      0.874 0.46 0.54
#> SRR1643506     2   0.995      0.874 0.46 0.54
#> SRR1643507     2   0.995      0.874 0.46 0.54
#> SRR1643508     2   0.995      0.874 0.46 0.54
#> SRR1643509     2   0.995      0.874 0.46 0.54
#> SRR1643510     2   0.995      0.874 0.46 0.54
#> SRR1643511     2   0.995      0.874 0.46 0.54
#> SRR1643512     2   0.995      0.874 0.46 0.54
#> SRR1643513     2   0.995      0.874 0.46 0.54
#> SRR1643531     2   0.995      0.874 0.46 0.54
#> SRR1643532     2   0.995      0.874 0.46 0.54
#> SRR1643533     2   0.995      0.874 0.46 0.54
#> SRR1643534     2   0.995      0.874 0.46 0.54
#> SRR1643535     2   0.995      0.874 0.46 0.54
#> SRR1643536     2   0.995      0.874 0.46 0.54
#> SRR1643537     2   0.995      0.874 0.46 0.54
#> SRR1643538     2   0.995      0.874 0.46 0.54
#> SRR1643539     2   0.995      0.874 0.46 0.54
#> SRR1643540     2   0.995      0.874 0.46 0.54
#> SRR1643541     2   0.995      0.874 0.46 0.54
#> SRR1643542     2   0.995      0.874 0.46 0.54
#> SRR1643543     2   0.995      0.874 0.46 0.54
#> SRR1643544     2   0.995      0.874 0.46 0.54
#> SRR1643514     2   0.995      0.874 0.46 0.54
#> SRR1643515     2   0.995      0.874 0.46 0.54
#> SRR1643516     2   0.995      0.874 0.46 0.54
#> SRR1643517     2   0.995      0.874 0.46 0.54
#> SRR1643518     2   0.995      0.874 0.46 0.54
#> SRR1643519     2   0.995      0.874 0.46 0.54
#> SRR1643520     2   0.995      0.874 0.46 0.54
#> SRR1643521     2   0.995      0.874 0.46 0.54
#> SRR1643522     2   0.995      0.874 0.46 0.54
#> SRR1643523     2   0.995      0.874 0.46 0.54
#> SRR1643524     2   0.995      0.874 0.46 0.54
#> SRR1643525     2   0.995      0.874 0.46 0.54
#> SRR1643526     2   0.995      0.874 0.46 0.54
#> SRR1643527     2   0.995      0.874 0.46 0.54
#> SRR1643528     2   0.995      0.874 0.46 0.54
#> SRR1643529     2   0.995      0.874 0.46 0.54
#> SRR1643530     2   0.995      0.874 0.46 0.54
#> SRR1643545     2   0.995      0.874 0.46 0.54
#> SRR1643546     2   0.995      0.874 0.46 0.54
#> SRR1643547     2   0.995      0.874 0.46 0.54
#> SRR1643548     2   0.995      0.874 0.46 0.54
#> SRR1643549     2   0.995      0.874 0.46 0.54
#> SRR1643550     2   0.995      0.874 0.46 0.54
#> SRR1643551     2   0.995      0.874 0.46 0.54
#> SRR1643552     2   0.995      0.874 0.46 0.54
#> SRR1643553     2   0.995      0.874 0.46 0.54
#> SRR1643554     2   0.995      0.874 0.46 0.54
#> SRR1643555     2   0.995      0.874 0.46 0.54
#> SRR1643556     2   0.995      0.874 0.46 0.54
#> SRR1643558     2   0.995      0.874 0.46 0.54
#> SRR1643559     2   0.995      0.874 0.46 0.54
#> SRR1643560     2   0.995      0.874 0.46 0.54
#> SRR1643561     2   0.995      0.874 0.46 0.54
#> SRR1643562     2   0.995      0.874 0.46 0.54
#> SRR1643563     2   0.995      0.874 0.46 0.54
#> SRR1643564     2   0.995      0.874 0.46 0.54
#> SRR1643565     2   0.995      0.874 0.46 0.54
#> SRR1643566     2   0.995      0.874 0.46 0.54
#> SRR1643567     2   0.995      0.874 0.46 0.54
#> SRR1643568     2   0.995      0.874 0.46 0.54
#> SRR1643569     2   0.995      0.874 0.46 0.54
#> SRR1643570     2   0.995      0.874 0.46 0.54
#> SRR1643571     2   0.995      0.874 0.46 0.54
#> SRR1643572     2   0.995      0.874 0.46 0.54

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1    p2    p3
#> SRR1643167     1  0.2625     0.9326 0.916 0.000 0.084
#> SRR1643168     1  0.2625     0.9326 0.916 0.000 0.084
#> SRR1643169     1  0.2625     0.9326 0.916 0.000 0.084
#> SRR1643170     1  0.2625     0.9326 0.916 0.000 0.084
#> SRR1643171     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643172     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643173     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643174     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643175     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643176     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643177     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643178     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643180     1  0.4504     0.7988 0.804 0.000 0.196
#> SRR1643181     1  0.4504     0.7988 0.804 0.000 0.196
#> SRR1643182     1  0.4796     0.7573 0.780 0.000 0.220
#> SRR1643183     1  0.2625     0.9325 0.916 0.000 0.084
#> SRR1643184     1  0.2625     0.9325 0.916 0.000 0.084
#> SRR1643185     1  0.2625     0.9325 0.916 0.000 0.084
#> SRR1643186     1  0.2625     0.9325 0.916 0.000 0.084
#> SRR1643187     1  0.6307    -0.0907 0.512 0.000 0.488
#> SRR1643188     1  0.6307    -0.0907 0.512 0.000 0.488
#> SRR1643189     1  0.6307    -0.0907 0.512 0.000 0.488
#> SRR1643190     1  0.6307    -0.0907 0.512 0.000 0.488
#> SRR1643191     3  0.6204     0.3986 0.424 0.000 0.576
#> SRR1643192     3  0.6225     0.3825 0.432 0.000 0.568
#> SRR1643193     1  0.4346     0.8137 0.816 0.000 0.184
#> SRR1643194     1  0.4399     0.8072 0.812 0.000 0.188
#> SRR1643195     1  0.2711     0.9297 0.912 0.000 0.088
#> SRR1643196     1  0.2625     0.9325 0.916 0.000 0.084
#> SRR1643197     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643198     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643199     1  0.2625     0.9326 0.916 0.000 0.084
#> SRR1643200     1  0.2625     0.9326 0.916 0.000 0.084
#> SRR1643201     1  0.5760     0.5131 0.672 0.000 0.328
#> SRR1643202     1  0.5785     0.5009 0.668 0.000 0.332
#> SRR1643203     1  0.6062     0.3451 0.616 0.000 0.384
#> SRR1643204     1  0.6079     0.3311 0.612 0.000 0.388
#> SRR1643205     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643206     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643207     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643208     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643209     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643210     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643211     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643212     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643213     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643214     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643215     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643216     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643217     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643218     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643219     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643220     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643221     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643222     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643223     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643224     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643225     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643226     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643227     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643228     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643229     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643230     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643231     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643232     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643233     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643234     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643235     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643236     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643237     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643238     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643239     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643240     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643241     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643242     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643243     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643245     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643246     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643247     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643248     3  0.0000     0.8104 0.000 0.000 1.000
#> SRR1643249     3  0.0237     0.8093 0.004 0.000 0.996
#> SRR1643250     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643251     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643252     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643253     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643254     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643255     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643256     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643257     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643258     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643259     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643260     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643261     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643262     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643263     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643264     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643266     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643267     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643268     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643269     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643270     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643271     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643272     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643273     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643274     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643275     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643276     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643277     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643278     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643279     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643280     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643281     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643282     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643283     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643284     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643285     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643286     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643287     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643288     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643289     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643290     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643291     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643292     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643293     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643294     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643295     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643296     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643297     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643298     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643299     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643300     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643301     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643302     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643303     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643304     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643305     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643306     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643307     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643308     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643309     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643310     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643311     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643312     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643313     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643314     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643315     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643316     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643317     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643318     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643319     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643320     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643321     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643322     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643323     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643324     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643325     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643326     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643327     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643328     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643329     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643330     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643331     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643332     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643333     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643334     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643335     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643336     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643337     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643338     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643339     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643340     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643341     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643342     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643343     1  0.3551     0.8930 0.868 0.000 0.132
#> SRR1643344     1  0.3551     0.8930 0.868 0.000 0.132
#> SRR1643345     1  0.3551     0.8930 0.868 0.000 0.132
#> SRR1643346     1  0.3551     0.8930 0.868 0.000 0.132
#> SRR1643347     1  0.3551     0.8930 0.868 0.000 0.132
#> SRR1643348     1  0.3551     0.8930 0.868 0.000 0.132
#> SRR1643349     1  0.3551     0.8930 0.868 0.000 0.132
#> SRR1643350     1  0.3551     0.8930 0.868 0.000 0.132
#> SRR1643351     1  0.3551     0.8930 0.868 0.000 0.132
#> SRR1643352     1  0.3551     0.8930 0.868 0.000 0.132
#> SRR1643353     1  0.3551     0.8930 0.868 0.000 0.132
#> SRR1643354     1  0.3551     0.8930 0.868 0.000 0.132
#> SRR1643355     1  0.3551     0.8930 0.868 0.000 0.132
#> SRR1643356     1  0.3551     0.8930 0.868 0.000 0.132
#> SRR1643357     1  0.3551     0.8930 0.868 0.000 0.132
#> SRR1643358     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643359     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643360     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643361     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643362     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643363     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643364     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643365     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643366     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643367     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643368     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643369     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643370     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643371     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643372     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643373     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643374     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643375     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643376     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643377     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643378     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643379     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643380     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643381     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643382     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643383     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643384     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643385     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643386     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643387     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643388     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643389     1  0.0000     0.9065 1.000 0.000 0.000
#> SRR1643390     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643391     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643392     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643393     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643394     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643395     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643396     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643397     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643398     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643399     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643400     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643401     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643402     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643403     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643404     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643405     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643406     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643407     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643408     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643409     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643410     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643411     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643412     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643413     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643414     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643415     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643416     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643417     1  0.2537     0.9349 0.920 0.000 0.080
#> SRR1643418     3  0.5948     0.5356 0.360 0.000 0.640
#> SRR1643419     3  0.5948     0.5356 0.360 0.000 0.640
#> SRR1643420     3  0.5948     0.5356 0.360 0.000 0.640
#> SRR1643421     3  0.5948     0.5356 0.360 0.000 0.640
#> SRR1643422     3  0.5948     0.5356 0.360 0.000 0.640
#> SRR1643423     3  0.5948     0.5356 0.360 0.000 0.640
#> SRR1643424     3  0.5948     0.5356 0.360 0.000 0.640
#> SRR1643425     3  0.5948     0.5356 0.360 0.000 0.640
#> SRR1643426     3  0.5948     0.5356 0.360 0.000 0.640
#> SRR1643427     3  0.5948     0.5356 0.360 0.000 0.640
#> SRR1643428     3  0.5948     0.5356 0.360 0.000 0.640
#> SRR1643429     3  0.5948     0.5356 0.360 0.000 0.640
#> SRR1643430     3  0.6244     0.3719 0.440 0.000 0.560
#> SRR1643431     3  0.6244     0.3719 0.440 0.000 0.560
#> SRR1643432     3  0.6252     0.3602 0.444 0.000 0.556
#> SRR1643433     3  0.6244     0.3719 0.440 0.000 0.560
#> SRR1643434     3  0.6252     0.3602 0.444 0.000 0.556
#> SRR1643435     3  0.6244     0.3719 0.440 0.000 0.560
#> SRR1643436     3  0.6252     0.3602 0.444 0.000 0.556
#> SRR1643437     3  0.6252     0.3602 0.444 0.000 0.556
#> SRR1643438     3  0.6252     0.3602 0.444 0.000 0.556
#> SRR1643439     3  0.6252     0.3602 0.444 0.000 0.556
#> SRR1643440     3  0.6244     0.3719 0.440 0.000 0.560
#> SRR1643441     3  0.6244     0.3719 0.440 0.000 0.560
#> SRR1643442     3  0.6244     0.3719 0.440 0.000 0.560
#> SRR1643443     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643444     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643445     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643446     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643447     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643448     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643449     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643450     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643451     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643452     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643453     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643454     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643455     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643456     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643457     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643458     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643459     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643460     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643461     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643462     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643463     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643464     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643466     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643467     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643468     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643469     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643470     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643471     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643472     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643473     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643474     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643475     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643477     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643478     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643479     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643480     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643481     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643482     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643483     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643484     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643485     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643486     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643487     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643488     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643489     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643490     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643491     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643492     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643493     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643494     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643495     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643496     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643497     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643498     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643499     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643500     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643501     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643502     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643503     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643504     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643505     2  0.1643     0.9623 0.000 0.956 0.044
#> SRR1643506     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643507     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643508     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643509     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643510     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643511     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643512     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643513     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643531     2  0.1643     0.9623 0.000 0.956 0.044
#> SRR1643532     2  0.1643     0.9623 0.000 0.956 0.044
#> SRR1643533     2  0.1643     0.9623 0.000 0.956 0.044
#> SRR1643534     2  0.1643     0.9623 0.000 0.956 0.044
#> SRR1643535     2  0.1643     0.9623 0.000 0.956 0.044
#> SRR1643536     2  0.1643     0.9623 0.000 0.956 0.044
#> SRR1643537     2  0.1643     0.9623 0.000 0.956 0.044
#> SRR1643538     2  0.1643     0.9623 0.000 0.956 0.044
#> SRR1643539     2  0.1643     0.9623 0.000 0.956 0.044
#> SRR1643540     2  0.1643     0.9623 0.000 0.956 0.044
#> SRR1643541     2  0.1643     0.9623 0.000 0.956 0.044
#> SRR1643542     2  0.1643     0.9623 0.000 0.956 0.044
#> SRR1643543     2  0.1643     0.9623 0.000 0.956 0.044
#> SRR1643544     2  0.1643     0.9623 0.000 0.956 0.044
#> SRR1643514     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643515     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643516     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643517     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643518     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643519     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643520     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643521     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643522     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643523     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643524     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643525     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643526     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643527     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643528     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643529     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643530     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643545     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643546     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643547     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643548     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643549     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643550     2  0.0892     0.9804 0.000 0.980 0.020
#> SRR1643551     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643552     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643553     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643554     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643555     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643556     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643558     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643559     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643560     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643561     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643562     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643563     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643564     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643565     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643566     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643567     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643568     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643569     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643570     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643571     2  0.0000     0.9949 0.000 1.000 0.000
#> SRR1643572     2  0.0000     0.9949 0.000 1.000 0.000

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1    p2    p3    p4
#> SRR1643167     1  0.2256      0.841 0.924 0.000 0.020 0.056
#> SRR1643168     1  0.2256      0.841 0.924 0.000 0.020 0.056
#> SRR1643169     1  0.2256      0.841 0.924 0.000 0.020 0.056
#> SRR1643170     1  0.2256      0.841 0.924 0.000 0.020 0.056
#> SRR1643171     1  0.0672      0.872 0.984 0.000 0.008 0.008
#> SRR1643172     1  0.0524      0.872 0.988 0.000 0.004 0.008
#> SRR1643173     1  0.0672      0.872 0.984 0.000 0.008 0.008
#> SRR1643174     1  0.0524      0.872 0.988 0.000 0.004 0.008
#> SRR1643175     1  0.2300      0.839 0.920 0.000 0.064 0.016
#> SRR1643176     1  0.2300      0.839 0.920 0.000 0.064 0.016
#> SRR1643177     1  0.2300      0.839 0.920 0.000 0.064 0.016
#> SRR1643178     1  0.2300      0.839 0.920 0.000 0.064 0.016
#> SRR1643180     1  0.3907      0.746 0.828 0.000 0.140 0.032
#> SRR1643181     1  0.3907      0.747 0.828 0.000 0.140 0.032
#> SRR1643182     1  0.3958      0.741 0.824 0.000 0.144 0.032
#> SRR1643183     1  0.1059      0.869 0.972 0.000 0.012 0.016
#> SRR1643184     1  0.1059      0.869 0.972 0.000 0.012 0.016
#> SRR1643185     1  0.1059      0.869 0.972 0.000 0.012 0.016
#> SRR1643186     1  0.1059      0.869 0.972 0.000 0.012 0.016
#> SRR1643187     1  0.5592      0.441 0.656 0.000 0.300 0.044
#> SRR1643188     1  0.5592      0.441 0.656 0.000 0.300 0.044
#> SRR1643189     1  0.5592      0.441 0.656 0.000 0.300 0.044
#> SRR1643190     1  0.5592      0.441 0.656 0.000 0.300 0.044
#> SRR1643191     3  0.4838      0.529 0.252 0.000 0.724 0.024
#> SRR1643192     3  0.4838      0.529 0.252 0.000 0.724 0.024
#> SRR1643193     1  0.3542      0.755 0.852 0.000 0.120 0.028
#> SRR1643194     1  0.3485      0.756 0.856 0.000 0.116 0.028
#> SRR1643195     1  0.5470      0.573 0.736 0.000 0.116 0.148
#> SRR1643196     1  0.5314      0.598 0.748 0.000 0.108 0.144
#> SRR1643197     1  0.1284      0.867 0.964 0.000 0.024 0.012
#> SRR1643198     1  0.1174      0.868 0.968 0.000 0.020 0.012
#> SRR1643199     1  0.2313      0.845 0.924 0.000 0.032 0.044
#> SRR1643200     1  0.2313      0.845 0.924 0.000 0.032 0.044
#> SRR1643201     1  0.6275      0.388 0.640 0.000 0.256 0.104
#> SRR1643202     1  0.6248      0.390 0.640 0.000 0.260 0.100
#> SRR1643203     1  0.5284      0.504 0.696 0.000 0.264 0.040
#> SRR1643204     1  0.5200      0.507 0.700 0.000 0.264 0.036
#> SRR1643205     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643206     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643207     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643208     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643209     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643210     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643211     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643212     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643213     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643214     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643215     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643216     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643217     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643218     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643219     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643220     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643221     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643222     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643223     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643224     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643225     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643226     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643227     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643228     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643229     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643230     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643231     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643232     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643233     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643234     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643235     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643236     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643237     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643238     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643239     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643240     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643241     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643242     3  0.2760      0.828 0.000 0.000 0.872 0.128
#> SRR1643243     3  0.4222      0.856 0.000 0.000 0.728 0.272
#> SRR1643245     3  0.4250      0.859 0.000 0.000 0.724 0.276
#> SRR1643246     3  0.4250      0.859 0.000 0.000 0.724 0.276
#> SRR1643247     3  0.4250      0.859 0.000 0.000 0.724 0.276
#> SRR1643248     3  0.4605      0.870 0.000 0.000 0.664 0.336
#> SRR1643249     3  0.1867      0.811 0.000 0.000 0.928 0.072
#> SRR1643250     4  0.5253      0.965 0.360 0.000 0.016 0.624
#> SRR1643251     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643252     4  0.4936      0.986 0.372 0.000 0.004 0.624
#> SRR1643253     4  0.4790      0.990 0.380 0.000 0.000 0.620
#> SRR1643254     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643255     4  0.5159      0.972 0.364 0.000 0.012 0.624
#> SRR1643256     4  0.4790      0.990 0.380 0.000 0.000 0.620
#> SRR1643257     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643258     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643259     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643260     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643261     4  0.5253      0.965 0.360 0.000 0.016 0.624
#> SRR1643262     4  0.4804      0.987 0.384 0.000 0.000 0.616
#> SRR1643263     4  0.4790      0.990 0.380 0.000 0.000 0.620
#> SRR1643264     4  0.4817      0.981 0.388 0.000 0.000 0.612
#> SRR1643266     4  0.4804      0.987 0.384 0.000 0.000 0.616
#> SRR1643267     4  0.4817      0.981 0.388 0.000 0.000 0.612
#> SRR1643268     4  0.4817      0.981 0.388 0.000 0.000 0.612
#> SRR1643269     4  0.4804      0.987 0.384 0.000 0.000 0.616
#> SRR1643270     4  0.4855      0.960 0.400 0.000 0.000 0.600
#> SRR1643271     4  0.4790      0.990 0.380 0.000 0.000 0.620
#> SRR1643272     4  0.4804      0.987 0.384 0.000 0.000 0.616
#> SRR1643273     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643274     1  0.0592      0.870 0.984 0.000 0.000 0.016
#> SRR1643275     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643276     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643277     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643278     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643279     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643280     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643281     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643282     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643283     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643284     1  0.0336      0.871 0.992 0.000 0.000 0.008
#> SRR1643285     1  0.0592      0.870 0.984 0.000 0.000 0.016
#> SRR1643286     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643287     1  0.3726      0.523 0.788 0.000 0.000 0.212
#> SRR1643288     1  0.3801      0.508 0.780 0.000 0.000 0.220
#> SRR1643289     1  0.3764      0.514 0.784 0.000 0.000 0.216
#> SRR1643290     1  0.3764      0.514 0.784 0.000 0.000 0.216
#> SRR1643291     1  0.3801      0.508 0.780 0.000 0.000 0.220
#> SRR1643292     1  0.3726      0.523 0.788 0.000 0.000 0.212
#> SRR1643293     1  0.3688      0.534 0.792 0.000 0.000 0.208
#> SRR1643294     1  0.3764      0.514 0.784 0.000 0.000 0.216
#> SRR1643295     1  0.3764      0.514 0.784 0.000 0.000 0.216
#> SRR1643296     1  0.3688      0.534 0.792 0.000 0.000 0.208
#> SRR1643297     1  0.3726      0.523 0.788 0.000 0.000 0.212
#> SRR1643298     1  0.3726      0.523 0.788 0.000 0.000 0.212
#> SRR1643299     1  0.3726      0.523 0.788 0.000 0.000 0.212
#> SRR1643300     1  0.3726      0.523 0.788 0.000 0.000 0.212
#> SRR1643301     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643302     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643303     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643304     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643305     1  0.0592      0.870 0.984 0.000 0.000 0.016
#> SRR1643306     1  0.0921      0.866 0.972 0.000 0.000 0.028
#> SRR1643307     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643308     1  0.0592      0.870 0.984 0.000 0.000 0.016
#> SRR1643309     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643310     1  0.0592      0.870 0.984 0.000 0.000 0.016
#> SRR1643311     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643312     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643313     1  0.0469      0.870 0.988 0.000 0.000 0.012
#> SRR1643314     1  0.0000      0.872 1.000 0.000 0.000 0.000
#> SRR1643315     1  0.0000      0.872 1.000 0.000 0.000 0.000
#> SRR1643316     1  0.0000      0.872 1.000 0.000 0.000 0.000
#> SRR1643317     1  0.0000      0.872 1.000 0.000 0.000 0.000
#> SRR1643318     1  0.0000      0.872 1.000 0.000 0.000 0.000
#> SRR1643319     1  0.0000      0.872 1.000 0.000 0.000 0.000
#> SRR1643320     1  0.0000      0.872 1.000 0.000 0.000 0.000
#> SRR1643321     1  0.0000      0.872 1.000 0.000 0.000 0.000
#> SRR1643322     1  0.0000      0.872 1.000 0.000 0.000 0.000
#> SRR1643323     1  0.0000      0.872 1.000 0.000 0.000 0.000
#> SRR1643324     1  0.0000      0.872 1.000 0.000 0.000 0.000
#> SRR1643325     1  0.0000      0.872 1.000 0.000 0.000 0.000
#> SRR1643326     1  0.0000      0.872 1.000 0.000 0.000 0.000
#> SRR1643327     1  0.0000      0.872 1.000 0.000 0.000 0.000
#> SRR1643328     1  0.0188      0.872 0.996 0.000 0.000 0.004
#> SRR1643329     1  0.0188      0.872 0.996 0.000 0.000 0.004
#> SRR1643330     1  0.0188      0.872 0.996 0.000 0.000 0.004
#> SRR1643331     1  0.0188      0.872 0.996 0.000 0.000 0.004
#> SRR1643332     1  0.0188      0.872 0.996 0.000 0.000 0.004
#> SRR1643333     1  0.0188      0.872 0.996 0.000 0.000 0.004
#> SRR1643334     1  0.0188      0.872 0.996 0.000 0.000 0.004
#> SRR1643335     1  0.0188      0.872 0.996 0.000 0.000 0.004
#> SRR1643336     1  0.0188      0.872 0.996 0.000 0.000 0.004
#> SRR1643337     1  0.0188      0.872 0.996 0.000 0.000 0.004
#> SRR1643338     1  0.0188      0.872 0.996 0.000 0.000 0.004
#> SRR1643339     1  0.0188      0.872 0.996 0.000 0.000 0.004
#> SRR1643340     1  0.0188      0.872 0.996 0.000 0.000 0.004
#> SRR1643341     1  0.0188      0.872 0.996 0.000 0.000 0.004
#> SRR1643342     1  0.0188      0.872 0.996 0.000 0.000 0.004
#> SRR1643343     1  0.3505      0.803 0.864 0.000 0.088 0.048
#> SRR1643344     1  0.3505      0.803 0.864 0.000 0.088 0.048
#> SRR1643345     1  0.3505      0.803 0.864 0.000 0.088 0.048
#> SRR1643346     1  0.3505      0.803 0.864 0.000 0.088 0.048
#> SRR1643347     1  0.3505      0.803 0.864 0.000 0.088 0.048
#> SRR1643348     1  0.3505      0.803 0.864 0.000 0.088 0.048
#> SRR1643349     1  0.3505      0.803 0.864 0.000 0.088 0.048
#> SRR1643350     1  0.3505      0.803 0.864 0.000 0.088 0.048
#> SRR1643351     1  0.3505      0.803 0.864 0.000 0.088 0.048
#> SRR1643352     1  0.3505      0.803 0.864 0.000 0.088 0.048
#> SRR1643353     1  0.3505      0.803 0.864 0.000 0.088 0.048
#> SRR1643354     1  0.3505      0.803 0.864 0.000 0.088 0.048
#> SRR1643355     1  0.3505      0.803 0.864 0.000 0.088 0.048
#> SRR1643356     1  0.3505      0.803 0.864 0.000 0.088 0.048
#> SRR1643357     1  0.3505      0.803 0.864 0.000 0.088 0.048
#> SRR1643358     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643359     4  0.4804      0.985 0.384 0.000 0.000 0.616
#> SRR1643360     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643361     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643362     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643363     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643364     1  0.5807     -0.122 0.612 0.000 0.044 0.344
#> SRR1643365     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643366     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643367     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643368     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643369     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643370     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643371     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643372     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643373     4  0.4790      0.990 0.380 0.000 0.000 0.620
#> SRR1643374     4  0.4790      0.990 0.380 0.000 0.000 0.620
#> SRR1643375     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643376     4  0.4790      0.990 0.380 0.000 0.000 0.620
#> SRR1643377     4  0.4790      0.990 0.380 0.000 0.000 0.620
#> SRR1643378     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643379     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643380     4  0.4790      0.990 0.380 0.000 0.000 0.620
#> SRR1643381     1  0.5902      0.470 0.700 0.000 0.160 0.140
#> SRR1643382     4  0.4790      0.990 0.380 0.000 0.000 0.620
#> SRR1643383     4  0.4817      0.980 0.388 0.000 0.000 0.612
#> SRR1643384     4  0.4790      0.990 0.380 0.000 0.000 0.620
#> SRR1643385     4  0.4790      0.986 0.380 0.000 0.000 0.620
#> SRR1643386     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643387     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643388     4  0.4790      0.990 0.380 0.000 0.000 0.620
#> SRR1643389     4  0.4776      0.992 0.376 0.000 0.000 0.624
#> SRR1643390     1  0.0469      0.872 0.988 0.000 0.000 0.012
#> SRR1643391     1  0.0336      0.871 0.992 0.000 0.000 0.008
#> SRR1643392     1  0.0336      0.871 0.992 0.000 0.000 0.008
#> SRR1643393     1  0.0336      0.871 0.992 0.000 0.000 0.008
#> SRR1643394     1  0.0336      0.871 0.992 0.000 0.000 0.008
#> SRR1643395     1  0.0336      0.871 0.992 0.000 0.000 0.008
#> SRR1643396     1  0.1297      0.869 0.964 0.000 0.016 0.020
#> SRR1643397     1  0.0336      0.871 0.992 0.000 0.000 0.008
#> SRR1643398     1  0.0469      0.872 0.988 0.000 0.000 0.012
#> SRR1643399     1  0.0336      0.871 0.992 0.000 0.000 0.008
#> SRR1643400     1  0.0336      0.871 0.992 0.000 0.000 0.008
#> SRR1643401     1  0.0336      0.871 0.992 0.000 0.000 0.008
#> SRR1643402     1  0.0336      0.871 0.992 0.000 0.000 0.008
#> SRR1643403     1  0.0336      0.871 0.992 0.000 0.000 0.008
#> SRR1643404     1  0.0469      0.872 0.988 0.000 0.000 0.012
#> SRR1643405     1  0.2413      0.841 0.916 0.000 0.064 0.020
#> SRR1643406     1  0.2413      0.841 0.916 0.000 0.064 0.020
#> SRR1643407     1  0.2413      0.841 0.916 0.000 0.064 0.020
#> SRR1643408     1  0.2413      0.841 0.916 0.000 0.064 0.020
#> SRR1643409     1  0.2413      0.841 0.916 0.000 0.064 0.020
#> SRR1643410     1  0.2413      0.841 0.916 0.000 0.064 0.020
#> SRR1643411     1  0.2413      0.841 0.916 0.000 0.064 0.020
#> SRR1643412     1  0.2413      0.841 0.916 0.000 0.064 0.020
#> SRR1643413     1  0.2413      0.841 0.916 0.000 0.064 0.020
#> SRR1643414     1  0.2413      0.841 0.916 0.000 0.064 0.020
#> SRR1643415     1  0.2413      0.841 0.916 0.000 0.064 0.020
#> SRR1643416     1  0.2413      0.841 0.916 0.000 0.064 0.020
#> SRR1643417     1  0.2413      0.841 0.916 0.000 0.064 0.020
#> SRR1643418     3  0.2124      0.790 0.040 0.000 0.932 0.028
#> SRR1643419     3  0.2124      0.790 0.040 0.000 0.932 0.028
#> SRR1643420     3  0.2124      0.790 0.040 0.000 0.932 0.028
#> SRR1643421     3  0.2124      0.790 0.040 0.000 0.932 0.028
#> SRR1643422     3  0.2124      0.790 0.040 0.000 0.932 0.028
#> SRR1643423     3  0.2124      0.790 0.040 0.000 0.932 0.028
#> SRR1643424     3  0.2124      0.790 0.040 0.000 0.932 0.028
#> SRR1643425     3  0.2124      0.790 0.040 0.000 0.932 0.028
#> SRR1643426     3  0.2124      0.790 0.040 0.000 0.932 0.028
#> SRR1643427     3  0.2124      0.790 0.040 0.000 0.932 0.028
#> SRR1643428     3  0.2124      0.790 0.040 0.000 0.932 0.028
#> SRR1643429     3  0.2124      0.790 0.040 0.000 0.932 0.028
#> SRR1643430     3  0.2363      0.783 0.056 0.000 0.920 0.024
#> SRR1643431     3  0.2363      0.783 0.056 0.000 0.920 0.024
#> SRR1643432     3  0.2363      0.783 0.056 0.000 0.920 0.024
#> SRR1643433     3  0.2363      0.783 0.056 0.000 0.920 0.024
#> SRR1643434     3  0.2363      0.783 0.056 0.000 0.920 0.024
#> SRR1643435     3  0.2363      0.783 0.056 0.000 0.920 0.024
#> SRR1643436     3  0.2363      0.783 0.056 0.000 0.920 0.024
#> SRR1643437     3  0.2363      0.783 0.056 0.000 0.920 0.024
#> SRR1643438     3  0.2363      0.783 0.056 0.000 0.920 0.024
#> SRR1643439     3  0.2363      0.783 0.056 0.000 0.920 0.024
#> SRR1643440     3  0.2363      0.783 0.056 0.000 0.920 0.024
#> SRR1643441     3  0.2363      0.783 0.056 0.000 0.920 0.024
#> SRR1643442     3  0.2363      0.783 0.056 0.000 0.920 0.024
#> SRR1643443     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643444     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643445     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643446     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643447     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643448     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643449     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643450     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643451     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643452     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643453     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643454     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643455     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643456     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643457     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643458     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643459     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643460     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643461     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643462     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643463     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643464     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643466     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643467     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643468     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643469     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643470     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643471     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643472     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643473     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643474     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643475     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643477     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643478     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643479     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643480     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643481     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643482     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643483     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643484     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643485     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643486     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643487     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643488     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643489     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643490     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643491     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643492     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643493     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643494     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643495     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643496     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643497     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643498     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643499     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643500     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643501     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643502     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643503     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643504     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643505     2  0.0336      0.993 0.000 0.992 0.008 0.000
#> SRR1643506     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643507     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643508     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643509     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643510     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643511     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643512     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643513     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643531     2  0.0336      0.993 0.000 0.992 0.008 0.000
#> SRR1643532     2  0.0336      0.993 0.000 0.992 0.008 0.000
#> SRR1643533     2  0.0336      0.993 0.000 0.992 0.008 0.000
#> SRR1643534     2  0.0336      0.993 0.000 0.992 0.008 0.000
#> SRR1643535     2  0.0336      0.993 0.000 0.992 0.008 0.000
#> SRR1643536     2  0.0336      0.993 0.000 0.992 0.008 0.000
#> SRR1643537     2  0.0336      0.993 0.000 0.992 0.008 0.000
#> SRR1643538     2  0.0336      0.993 0.000 0.992 0.008 0.000
#> SRR1643539     2  0.0336      0.993 0.000 0.992 0.008 0.000
#> SRR1643540     2  0.0336      0.993 0.000 0.992 0.008 0.000
#> SRR1643541     2  0.0336      0.993 0.000 0.992 0.008 0.000
#> SRR1643542     2  0.0336      0.993 0.000 0.992 0.008 0.000
#> SRR1643543     2  0.0336      0.993 0.000 0.992 0.008 0.000
#> SRR1643544     2  0.0336      0.993 0.000 0.992 0.008 0.000
#> SRR1643514     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643515     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643516     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643517     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643518     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643519     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643520     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643521     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643522     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643523     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643524     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643525     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643526     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643527     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643528     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643529     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643530     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643545     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643546     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643547     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643548     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643549     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643550     2  0.0336      0.993 0.000 0.992 0.008 0.000
#> SRR1643551     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643552     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643553     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643554     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643555     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643556     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643558     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643559     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643560     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643561     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643562     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643563     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643564     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643565     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643566     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643567     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643568     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643569     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643570     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643571     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643572     2  0.0000      0.999 0.000 1.000 0.000 0.000

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1    p2    p3    p4    p5
#> SRR1643167     1  0.3722      0.807 0.824 0.000 0.032 0.128 0.016
#> SRR1643168     1  0.3675      0.811 0.828 0.000 0.032 0.124 0.016
#> SRR1643169     1  0.3675      0.811 0.828 0.000 0.032 0.124 0.016
#> SRR1643170     1  0.3675      0.811 0.828 0.000 0.032 0.124 0.016
#> SRR1643171     1  0.0932      0.874 0.972 0.000 0.004 0.020 0.004
#> SRR1643172     1  0.0932      0.874 0.972 0.000 0.004 0.020 0.004
#> SRR1643173     1  0.0932      0.874 0.972 0.000 0.004 0.020 0.004
#> SRR1643174     1  0.0932      0.874 0.972 0.000 0.004 0.020 0.004
#> SRR1643175     1  0.4152      0.816 0.816 0.000 0.036 0.060 0.088
#> SRR1643176     1  0.4152      0.816 0.816 0.000 0.036 0.060 0.088
#> SRR1643177     1  0.4152      0.816 0.816 0.000 0.036 0.060 0.088
#> SRR1643178     1  0.4152      0.816 0.816 0.000 0.036 0.060 0.088
#> SRR1643180     1  0.4849      0.743 0.756 0.000 0.136 0.084 0.024
#> SRR1643181     1  0.4891      0.738 0.752 0.000 0.140 0.084 0.024
#> SRR1643182     1  0.4932      0.733 0.748 0.000 0.144 0.084 0.024
#> SRR1643183     1  0.1591      0.865 0.940 0.000 0.004 0.052 0.004
#> SRR1643184     1  0.1443      0.868 0.948 0.000 0.004 0.044 0.004
#> SRR1643185     1  0.1591      0.865 0.940 0.000 0.004 0.052 0.004
#> SRR1643186     1  0.1518      0.866 0.944 0.000 0.004 0.048 0.004
#> SRR1643187     1  0.5656      0.681 0.696 0.000 0.140 0.128 0.036
#> SRR1643188     1  0.5656      0.681 0.696 0.000 0.140 0.128 0.036
#> SRR1643189     1  0.5656      0.681 0.696 0.000 0.140 0.128 0.036
#> SRR1643190     1  0.5656      0.681 0.696 0.000 0.140 0.128 0.036
#> SRR1643191     3  0.7502     -0.232 0.364 0.000 0.424 0.108 0.104
#> SRR1643192     3  0.7502     -0.232 0.364 0.000 0.424 0.108 0.104
#> SRR1643193     1  0.3093      0.836 0.872 0.000 0.032 0.080 0.016
#> SRR1643194     1  0.3174      0.833 0.868 0.000 0.036 0.080 0.016
#> SRR1643195     1  0.6504      0.418 0.564 0.000 0.168 0.248 0.020
#> SRR1643196     1  0.6418      0.423 0.568 0.000 0.168 0.248 0.016
#> SRR1643197     1  0.1885      0.870 0.936 0.000 0.020 0.032 0.012
#> SRR1643198     1  0.1989      0.870 0.932 0.000 0.020 0.032 0.016
#> SRR1643199     1  0.3775      0.816 0.832 0.000 0.060 0.092 0.016
#> SRR1643200     1  0.3763      0.816 0.832 0.000 0.056 0.096 0.016
#> SRR1643201     1  0.6535      0.493 0.588 0.000 0.172 0.208 0.032
#> SRR1643202     1  0.6535      0.493 0.588 0.000 0.172 0.208 0.032
#> SRR1643203     1  0.5407      0.699 0.716 0.000 0.152 0.096 0.036
#> SRR1643204     1  0.5331      0.703 0.720 0.000 0.152 0.096 0.032
#> SRR1643205     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643206     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643207     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643208     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643209     3  0.0162      0.919 0.000 0.000 0.996 0.000 0.004
#> SRR1643210     3  0.0162      0.919 0.000 0.000 0.996 0.000 0.004
#> SRR1643211     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643212     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643213     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643214     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643215     3  0.0162      0.919 0.000 0.000 0.996 0.000 0.004
#> SRR1643216     3  0.0162      0.919 0.000 0.000 0.996 0.000 0.004
#> SRR1643217     3  0.0162      0.919 0.000 0.000 0.996 0.000 0.004
#> SRR1643218     3  0.0162      0.919 0.000 0.000 0.996 0.000 0.004
#> SRR1643219     3  0.0162      0.919 0.000 0.000 0.996 0.000 0.004
#> SRR1643220     3  0.0162      0.919 0.000 0.000 0.996 0.000 0.004
#> SRR1643221     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643222     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643223     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643224     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643225     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643226     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643227     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643228     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643229     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643230     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643231     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643232     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643233     3  0.0324      0.916 0.000 0.000 0.992 0.004 0.004
#> SRR1643234     3  0.0324      0.916 0.000 0.000 0.992 0.004 0.004
#> SRR1643235     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643236     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643237     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643238     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643239     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643240     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643241     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643242     3  0.2438      0.789 0.000 0.000 0.900 0.040 0.060
#> SRR1643243     3  0.1549      0.863 0.000 0.000 0.944 0.040 0.016
#> SRR1643245     3  0.1836      0.842 0.000 0.000 0.932 0.032 0.036
#> SRR1643246     3  0.1836      0.842 0.000 0.000 0.932 0.032 0.036
#> SRR1643247     3  0.1836      0.842 0.000 0.000 0.932 0.032 0.036
#> SRR1643248     3  0.0000      0.922 0.000 0.000 1.000 0.000 0.000
#> SRR1643249     3  0.5890      0.176 0.104 0.000 0.696 0.096 0.104
#> SRR1643250     4  0.3039      0.970 0.152 0.000 0.000 0.836 0.012
#> SRR1643251     4  0.2930      0.983 0.164 0.000 0.000 0.832 0.004
#> SRR1643252     4  0.2971      0.975 0.156 0.000 0.000 0.836 0.008
#> SRR1643253     4  0.2929      0.970 0.180 0.000 0.000 0.820 0.000
#> SRR1643254     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643255     4  0.3098      0.963 0.148 0.000 0.000 0.836 0.016
#> SRR1643256     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643257     4  0.3039      0.970 0.152 0.000 0.000 0.836 0.012
#> SRR1643258     4  0.3013      0.978 0.160 0.000 0.000 0.832 0.008
#> SRR1643259     4  0.3039      0.970 0.152 0.000 0.000 0.836 0.012
#> SRR1643260     4  0.2971      0.975 0.156 0.000 0.000 0.836 0.008
#> SRR1643261     4  0.3151      0.957 0.144 0.000 0.000 0.836 0.020
#> SRR1643262     4  0.2773      0.984 0.164 0.000 0.000 0.836 0.000
#> SRR1643263     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643264     4  0.2813      0.982 0.168 0.000 0.000 0.832 0.000
#> SRR1643266     4  0.2773      0.984 0.164 0.000 0.000 0.836 0.000
#> SRR1643267     4  0.2813      0.983 0.168 0.000 0.000 0.832 0.000
#> SRR1643268     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643269     4  0.2773      0.984 0.164 0.000 0.000 0.836 0.000
#> SRR1643270     4  0.2891      0.973 0.176 0.000 0.000 0.824 0.000
#> SRR1643271     4  0.2773      0.984 0.164 0.000 0.000 0.836 0.000
#> SRR1643272     4  0.2773      0.984 0.164 0.000 0.000 0.836 0.000
#> SRR1643273     1  0.1018      0.872 0.968 0.000 0.000 0.016 0.016
#> SRR1643274     1  0.1211      0.872 0.960 0.000 0.000 0.024 0.016
#> SRR1643275     1  0.1216      0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643276     1  0.0912      0.872 0.972 0.000 0.000 0.012 0.016
#> SRR1643277     1  0.1018      0.872 0.968 0.000 0.000 0.016 0.016
#> SRR1643278     1  0.1117      0.872 0.964 0.000 0.000 0.016 0.020
#> SRR1643279     1  0.1117      0.872 0.964 0.000 0.000 0.016 0.020
#> SRR1643280     1  0.1117      0.872 0.964 0.000 0.000 0.016 0.020
#> SRR1643281     1  0.1117      0.872 0.964 0.000 0.000 0.016 0.020
#> SRR1643282     1  0.1117      0.872 0.964 0.000 0.000 0.016 0.020
#> SRR1643283     1  0.1117      0.872 0.964 0.000 0.000 0.016 0.020
#> SRR1643284     1  0.1012      0.872 0.968 0.000 0.000 0.012 0.020
#> SRR1643285     1  0.1300      0.871 0.956 0.000 0.000 0.028 0.016
#> SRR1643286     1  0.1117      0.872 0.964 0.000 0.000 0.016 0.020
#> SRR1643287     1  0.3988      0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643288     1  0.4090      0.580 0.716 0.000 0.000 0.268 0.016
#> SRR1643289     1  0.3988      0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643290     1  0.4014      0.594 0.728 0.000 0.000 0.256 0.016
#> SRR1643291     1  0.4040      0.589 0.724 0.000 0.000 0.260 0.016
#> SRR1643292     1  0.3988      0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643293     1  0.3988      0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643294     1  0.3988      0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643295     1  0.3988      0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643296     1  0.3988      0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643297     1  0.4040      0.590 0.724 0.000 0.000 0.260 0.016
#> SRR1643298     1  0.3988      0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643299     1  0.3988      0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643300     1  0.3988      0.599 0.732 0.000 0.000 0.252 0.016
#> SRR1643301     1  0.1216      0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643302     1  0.1216      0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643303     1  0.1216      0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643304     1  0.1216      0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643305     1  0.1216      0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643306     1  0.2079      0.858 0.916 0.000 0.000 0.064 0.020
#> SRR1643307     1  0.1216      0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643308     1  0.1216      0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643309     1  0.1216      0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643310     1  0.1216      0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643311     1  0.1216      0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643312     1  0.1216      0.870 0.960 0.000 0.000 0.020 0.020
#> SRR1643313     1  0.1117      0.871 0.964 0.000 0.000 0.020 0.016
#> SRR1643314     1  0.0771      0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643315     1  0.0771      0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643316     1  0.0771      0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643317     1  0.0671      0.873 0.980 0.000 0.000 0.004 0.016
#> SRR1643318     1  0.0771      0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643319     1  0.0771      0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643320     1  0.0898      0.872 0.972 0.000 0.000 0.008 0.020
#> SRR1643321     1  0.0771      0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643322     1  0.0771      0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643323     1  0.0771      0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643324     1  0.0771      0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643325     1  0.0771      0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643326     1  0.0771      0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643327     1  0.0771      0.873 0.976 0.000 0.000 0.004 0.020
#> SRR1643328     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643329     1  0.0290      0.873 0.992 0.000 0.000 0.000 0.008
#> SRR1643330     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643331     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643332     1  0.0290      0.873 0.992 0.000 0.000 0.000 0.008
#> SRR1643333     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643334     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643335     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643336     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643337     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643338     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643339     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643340     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643341     1  0.0290      0.873 0.992 0.000 0.000 0.000 0.008
#> SRR1643342     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643343     1  0.3942      0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643344     1  0.3942      0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643345     1  0.3942      0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643346     1  0.3942      0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643347     1  0.3942      0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643348     1  0.3942      0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643349     1  0.3942      0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643350     1  0.3942      0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643351     1  0.3942      0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643352     1  0.3942      0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643353     1  0.3942      0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643354     1  0.3942      0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643355     1  0.3942      0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643356     1  0.3942      0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643357     1  0.3942      0.806 0.804 0.000 0.032 0.016 0.148
#> SRR1643358     4  0.2970      0.983 0.168 0.000 0.000 0.828 0.004
#> SRR1643359     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643360     4  0.2970      0.983 0.168 0.000 0.000 0.828 0.004
#> SRR1643361     4  0.2773      0.984 0.164 0.000 0.000 0.836 0.000
#> SRR1643362     4  0.2930      0.983 0.164 0.000 0.000 0.832 0.004
#> SRR1643363     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643364     4  0.5440      0.420 0.396 0.000 0.064 0.540 0.000
#> SRR1643365     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643366     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643367     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643368     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643369     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643370     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643371     4  0.2970      0.983 0.168 0.000 0.000 0.828 0.004
#> SRR1643372     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643373     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643374     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643375     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643376     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643377     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643378     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643379     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643380     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643381     1  0.5442      0.552 0.644 0.000 0.116 0.240 0.000
#> SRR1643382     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643383     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643384     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643385     4  0.2773      0.984 0.164 0.000 0.000 0.836 0.000
#> SRR1643386     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643387     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643388     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643389     4  0.2813      0.986 0.168 0.000 0.000 0.832 0.000
#> SRR1643390     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643391     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643392     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643393     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643394     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643395     1  0.0324      0.874 0.992 0.000 0.000 0.004 0.004
#> SRR1643396     1  0.1356      0.871 0.956 0.000 0.012 0.028 0.004
#> SRR1643397     1  0.0324      0.874 0.992 0.000 0.000 0.004 0.004
#> SRR1643398     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643399     1  0.0324      0.874 0.992 0.000 0.000 0.004 0.004
#> SRR1643400     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643401     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643402     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643403     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643404     1  0.0162      0.874 0.996 0.000 0.000 0.000 0.004
#> SRR1643405     1  0.3523      0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643406     1  0.3523      0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643407     1  0.3523      0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643408     1  0.3523      0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643409     1  0.3523      0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643410     1  0.3523      0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643411     1  0.3523      0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643412     1  0.3523      0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643413     1  0.3523      0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643414     1  0.3523      0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643415     1  0.3523      0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643416     1  0.3523      0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643417     1  0.3523      0.820 0.824 0.000 0.032 0.004 0.140
#> SRR1643418     5  0.6015      0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643419     5  0.6015      0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643420     5  0.6015      0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643421     5  0.6015      0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643422     5  0.6015      0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643423     5  0.6015      0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643424     5  0.6015      0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643425     5  0.6015      0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643426     5  0.6015      0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643427     5  0.6015      0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643428     5  0.6015      0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643429     5  0.6015      0.976 0.024 0.000 0.408 0.060 0.508
#> SRR1643430     5  0.6267      0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643431     5  0.6267      0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643432     5  0.6267      0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643433     5  0.6267      0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643434     5  0.6267      0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643435     5  0.6267      0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643436     5  0.6267      0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643437     5  0.6267      0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643438     5  0.6267      0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643439     5  0.6267      0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643440     5  0.6267      0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643441     5  0.6267      0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643442     5  0.6267      0.978 0.036 0.000 0.400 0.064 0.500
#> SRR1643443     2  0.0880      0.912 0.000 0.968 0.000 0.000 0.032
#> SRR1643444     2  0.1043      0.912 0.000 0.960 0.000 0.000 0.040
#> SRR1643445     2  0.0880      0.912 0.000 0.968 0.000 0.000 0.032
#> SRR1643446     2  0.0880      0.912 0.000 0.968 0.000 0.000 0.032
#> SRR1643447     2  0.0794      0.912 0.000 0.972 0.000 0.000 0.028
#> SRR1643448     2  0.0703      0.912 0.000 0.976 0.000 0.000 0.024
#> SRR1643449     2  0.0880      0.912 0.000 0.968 0.000 0.000 0.032
#> SRR1643450     2  0.0794      0.912 0.000 0.972 0.000 0.000 0.028
#> SRR1643451     2  0.0880      0.912 0.000 0.968 0.000 0.000 0.032
#> SRR1643452     2  0.0880      0.912 0.000 0.968 0.000 0.000 0.032
#> SRR1643453     2  0.0880      0.912 0.000 0.968 0.000 0.000 0.032
#> SRR1643454     2  0.0880      0.912 0.000 0.968 0.000 0.000 0.032
#> SRR1643455     2  0.0794      0.912 0.000 0.972 0.000 0.000 0.028
#> SRR1643456     2  0.1121      0.912 0.000 0.956 0.000 0.000 0.044
#> SRR1643457     2  0.0794      0.914 0.000 0.972 0.000 0.000 0.028
#> SRR1643458     2  0.0510      0.913 0.000 0.984 0.000 0.000 0.016
#> SRR1643459     2  0.0290      0.914 0.000 0.992 0.000 0.000 0.008
#> SRR1643460     2  0.0703      0.914 0.000 0.976 0.000 0.000 0.024
#> SRR1643461     2  0.0794      0.914 0.000 0.972 0.000 0.000 0.028
#> SRR1643462     2  0.0963      0.913 0.000 0.964 0.000 0.000 0.036
#> SRR1643463     2  0.0963      0.913 0.000 0.964 0.000 0.000 0.036
#> SRR1643464     2  0.0963      0.913 0.000 0.964 0.000 0.000 0.036
#> SRR1643466     2  0.1121      0.912 0.000 0.956 0.000 0.000 0.044
#> SRR1643467     2  0.0609      0.914 0.000 0.980 0.000 0.000 0.020
#> SRR1643468     2  0.0963      0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643469     2  0.0963      0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643470     2  0.0963      0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643471     2  0.0963      0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643472     2  0.0963      0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643473     2  0.1043      0.912 0.000 0.960 0.000 0.000 0.040
#> SRR1643474     2  0.0963      0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643475     2  0.0963      0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643477     2  0.0963      0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643478     2  0.0963      0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643479     2  0.0963      0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643480     2  0.0963      0.912 0.000 0.964 0.000 0.000 0.036
#> SRR1643481     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643482     2  0.1851      0.899 0.000 0.912 0.000 0.000 0.088
#> SRR1643483     2  0.1965      0.897 0.000 0.904 0.000 0.000 0.096
#> SRR1643484     2  0.1965      0.897 0.000 0.904 0.000 0.000 0.096
#> SRR1643485     2  0.1965      0.897 0.000 0.904 0.000 0.000 0.096
#> SRR1643486     2  0.1965      0.897 0.000 0.904 0.000 0.000 0.096
#> SRR1643487     2  0.1965      0.897 0.000 0.904 0.000 0.000 0.096
#> SRR1643488     2  0.2020      0.896 0.000 0.900 0.000 0.000 0.100
#> SRR1643489     2  0.1965      0.897 0.000 0.904 0.000 0.000 0.096
#> SRR1643490     2  0.1792      0.901 0.000 0.916 0.000 0.000 0.084
#> SRR1643491     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643492     2  0.0880      0.913 0.000 0.968 0.000 0.000 0.032
#> SRR1643493     2  0.1792      0.900 0.000 0.916 0.000 0.000 0.084
#> SRR1643494     2  0.1965      0.897 0.000 0.904 0.000 0.000 0.096
#> SRR1643495     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643496     2  0.1732      0.902 0.000 0.920 0.000 0.000 0.080
#> SRR1643497     2  0.2377      0.883 0.000 0.872 0.000 0.000 0.128
#> SRR1643498     2  0.2377      0.883 0.000 0.872 0.000 0.000 0.128
#> SRR1643499     2  0.2377      0.883 0.000 0.872 0.000 0.000 0.128
#> SRR1643500     2  0.2377      0.883 0.000 0.872 0.000 0.000 0.128
#> SRR1643501     2  0.2179      0.891 0.000 0.888 0.000 0.000 0.112
#> SRR1643502     2  0.2179      0.891 0.000 0.888 0.000 0.000 0.112
#> SRR1643503     2  0.2377      0.883 0.000 0.872 0.000 0.000 0.128
#> SRR1643504     2  0.1732      0.902 0.000 0.920 0.000 0.000 0.080
#> SRR1643505     2  0.5678      0.714 0.000 0.672 0.024 0.104 0.200
#> SRR1643506     2  0.2377      0.883 0.000 0.872 0.000 0.000 0.128
#> SRR1643507     2  0.2280      0.888 0.000 0.880 0.000 0.000 0.120
#> SRR1643508     2  0.2179      0.891 0.000 0.888 0.000 0.000 0.112
#> SRR1643509     2  0.1908      0.900 0.000 0.908 0.000 0.000 0.092
#> SRR1643510     2  0.2280      0.887 0.000 0.880 0.000 0.000 0.120
#> SRR1643511     2  0.2280      0.887 0.000 0.880 0.000 0.000 0.120
#> SRR1643512     2  0.2377      0.883 0.000 0.872 0.000 0.000 0.128
#> SRR1643513     2  0.2329      0.885 0.000 0.876 0.000 0.000 0.124
#> SRR1643531     2  0.5944      0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643532     2  0.5944      0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643533     2  0.5944      0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643534     2  0.5944      0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643535     2  0.5944      0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643536     2  0.5944      0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643537     2  0.5944      0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643538     2  0.5944      0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643539     2  0.5944      0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643540     2  0.5944      0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643541     2  0.5944      0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643542     2  0.5944      0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643543     2  0.5944      0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643544     2  0.5944      0.690 0.000 0.636 0.024 0.108 0.232
#> SRR1643514     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643515     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643516     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643517     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643518     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643519     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643520     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643521     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643522     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643523     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643524     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643525     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643526     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643527     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643528     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643529     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643530     2  0.1908      0.898 0.000 0.908 0.000 0.000 0.092
#> SRR1643545     2  0.1341      0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643546     2  0.1341      0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643547     2  0.1341      0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643548     2  0.1341      0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643549     2  0.1341      0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643550     2  0.2139      0.909 0.000 0.920 0.012 0.012 0.056
#> SRR1643551     2  0.1341      0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643552     2  0.1341      0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643553     2  0.1341      0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643554     2  0.1341      0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643555     2  0.1341      0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643556     2  0.1341      0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643558     2  0.1341      0.910 0.000 0.944 0.000 0.000 0.056
#> SRR1643559     2  0.1478      0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643560     2  0.1478      0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643561     2  0.1478      0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643562     2  0.1478      0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643563     2  0.1478      0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643564     2  0.1571      0.909 0.000 0.936 0.000 0.004 0.060
#> SRR1643565     2  0.1478      0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643566     2  0.1478      0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643567     2  0.1478      0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643568     2  0.1478      0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643569     2  0.1478      0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643570     2  0.1478      0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643571     2  0.1478      0.908 0.000 0.936 0.000 0.000 0.064
#> SRR1643572     2  0.1478      0.908 0.000 0.936 0.000 0.000 0.064

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2    p3    p4    p5    p6
#> SRR1643167     1  0.4325      0.735 0.736 0.000 0.016 0.208 0.020 0.020
#> SRR1643168     1  0.4352      0.733 0.732 0.000 0.016 0.212 0.020 0.020
#> SRR1643169     1  0.4352      0.733 0.732 0.000 0.016 0.212 0.020 0.020
#> SRR1643170     1  0.4352      0.733 0.732 0.000 0.016 0.212 0.020 0.020
#> SRR1643171     1  0.1870      0.839 0.928 0.000 0.004 0.044 0.012 0.012
#> SRR1643172     1  0.1801      0.839 0.932 0.000 0.004 0.040 0.012 0.012
#> SRR1643173     1  0.1801      0.839 0.932 0.000 0.004 0.040 0.012 0.012
#> SRR1643174     1  0.1801      0.839 0.932 0.000 0.004 0.040 0.012 0.012
#> SRR1643175     1  0.5037      0.763 0.732 0.000 0.016 0.044 0.100 0.108
#> SRR1643176     1  0.5037      0.763 0.732 0.000 0.016 0.044 0.100 0.108
#> SRR1643177     1  0.5099      0.763 0.728 0.000 0.016 0.048 0.100 0.108
#> SRR1643178     1  0.5037      0.763 0.732 0.000 0.016 0.044 0.100 0.108
#> SRR1643180     1  0.4887      0.736 0.724 0.000 0.064 0.168 0.016 0.028
#> SRR1643181     1  0.4941      0.733 0.720 0.000 0.068 0.168 0.016 0.028
#> SRR1643182     1  0.4941      0.733 0.720 0.000 0.068 0.168 0.016 0.028
#> SRR1643183     1  0.2390      0.835 0.900 0.000 0.004 0.060 0.012 0.024
#> SRR1643184     1  0.2390      0.835 0.900 0.000 0.004 0.060 0.012 0.024
#> SRR1643185     1  0.2390      0.835 0.900 0.000 0.004 0.060 0.012 0.024
#> SRR1643186     1  0.2390      0.835 0.900 0.000 0.004 0.060 0.012 0.024
#> SRR1643187     1  0.5413      0.708 0.676 0.000 0.072 0.192 0.012 0.048
#> SRR1643188     1  0.5413      0.708 0.676 0.000 0.072 0.192 0.012 0.048
#> SRR1643189     1  0.5413      0.708 0.676 0.000 0.072 0.192 0.012 0.048
#> SRR1643190     1  0.5413      0.708 0.676 0.000 0.072 0.192 0.012 0.048
#> SRR1643191     1  0.6678      0.441 0.512 0.000 0.212 0.192 0.000 0.084
#> SRR1643192     1  0.6678      0.441 0.512 0.000 0.212 0.192 0.000 0.084
#> SRR1643193     1  0.4409      0.776 0.764 0.000 0.040 0.148 0.012 0.036
#> SRR1643194     1  0.4436      0.777 0.764 0.000 0.044 0.144 0.012 0.036
#> SRR1643195     1  0.6482      0.273 0.460 0.000 0.120 0.368 0.012 0.040
#> SRR1643196     1  0.6426      0.278 0.464 0.000 0.120 0.368 0.012 0.036
#> SRR1643197     1  0.2143      0.838 0.916 0.000 0.008 0.048 0.016 0.012
#> SRR1643198     1  0.2364      0.837 0.904 0.000 0.008 0.056 0.016 0.016
#> SRR1643199     1  0.4552      0.742 0.732 0.000 0.024 0.196 0.020 0.028
#> SRR1643200     1  0.4478      0.743 0.736 0.000 0.024 0.196 0.020 0.024
#> SRR1643201     1  0.6674      0.365 0.476 0.000 0.120 0.332 0.012 0.060
#> SRR1643202     1  0.6657      0.387 0.484 0.000 0.120 0.324 0.012 0.060
#> SRR1643203     1  0.5190      0.731 0.704 0.000 0.076 0.164 0.012 0.044
#> SRR1643204     1  0.5140      0.735 0.708 0.000 0.072 0.164 0.012 0.044
#> SRR1643205     3  0.0146      0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643206     3  0.0146      0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643207     3  0.0146      0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643208     3  0.0146      0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643209     3  0.0146      0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643210     3  0.0146      0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643211     3  0.0000      0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643212     3  0.0000      0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643213     3  0.0000      0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643214     3  0.0000      0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643215     3  0.0146      0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643216     3  0.0146      0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643217     3  0.0146      0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643218     3  0.0146      0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643219     3  0.0146      0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643220     3  0.0146      0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643221     3  0.0146      0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643222     3  0.0146      0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643223     3  0.0000      0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643224     3  0.0000      0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643225     3  0.0000      0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643226     3  0.0000      0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643227     3  0.0146      0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643228     3  0.0146      0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643229     3  0.0146      0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643230     3  0.0146      0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643231     3  0.0000      0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643232     3  0.0000      0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643233     3  0.0363      0.976 0.000 0.000 0.988 0.012 0.000 0.000
#> SRR1643234     3  0.0363      0.976 0.000 0.000 0.988 0.012 0.000 0.000
#> SRR1643235     3  0.0000      0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643236     3  0.0000      0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643237     3  0.0000      0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643238     3  0.0000      0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643239     3  0.0000      0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643240     3  0.0000      0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643241     3  0.0000      0.981 0.000 0.000 1.000 0.000 0.000 0.000
#> SRR1643242     3  0.2201      0.896 0.000 0.000 0.900 0.048 0.000 0.052
#> SRR1643243     3  0.1480      0.938 0.000 0.000 0.940 0.040 0.000 0.020
#> SRR1643245     3  0.1633      0.930 0.000 0.000 0.932 0.044 0.000 0.024
#> SRR1643246     3  0.1633      0.930 0.000 0.000 0.932 0.044 0.000 0.024
#> SRR1643247     3  0.1633      0.930 0.000 0.000 0.932 0.044 0.000 0.024
#> SRR1643248     3  0.0146      0.981 0.000 0.000 0.996 0.004 0.000 0.000
#> SRR1643249     3  0.5420      0.513 0.128 0.000 0.680 0.116 0.000 0.076
#> SRR1643250     4  0.1753      0.982 0.084 0.000 0.000 0.912 0.000 0.004
#> SRR1643251     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643252     4  0.1663      0.986 0.088 0.000 0.000 0.912 0.000 0.000
#> SRR1643253     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643254     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643255     4  0.1753      0.982 0.084 0.000 0.000 0.912 0.000 0.004
#> SRR1643256     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643257     4  0.1753      0.982 0.084 0.000 0.000 0.912 0.000 0.004
#> SRR1643258     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643259     4  0.1663      0.986 0.088 0.000 0.000 0.912 0.000 0.000
#> SRR1643260     4  0.1663      0.986 0.088 0.000 0.000 0.912 0.000 0.000
#> SRR1643261     4  0.1812      0.976 0.080 0.000 0.000 0.912 0.000 0.008
#> SRR1643262     4  0.1806      0.982 0.088 0.000 0.000 0.908 0.000 0.004
#> SRR1643263     4  0.1858      0.985 0.092 0.000 0.000 0.904 0.000 0.004
#> SRR1643264     4  0.1806      0.982 0.088 0.000 0.000 0.908 0.000 0.004
#> SRR1643266     4  0.1858      0.985 0.092 0.000 0.000 0.904 0.000 0.004
#> SRR1643267     4  0.1714      0.985 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643268     4  0.1858      0.985 0.092 0.000 0.000 0.904 0.000 0.004
#> SRR1643269     4  0.1858      0.985 0.092 0.000 0.000 0.904 0.000 0.004
#> SRR1643270     4  0.1908      0.978 0.096 0.000 0.000 0.900 0.000 0.004
#> SRR1643271     4  0.1858      0.985 0.092 0.000 0.000 0.904 0.000 0.004
#> SRR1643272     4  0.1806      0.982 0.088 0.000 0.000 0.908 0.000 0.004
#> SRR1643273     1  0.1675      0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643274     1  0.1749      0.835 0.932 0.000 0.000 0.036 0.008 0.024
#> SRR1643275     1  0.1749      0.834 0.932 0.000 0.000 0.036 0.008 0.024
#> SRR1643276     1  0.1675      0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643277     1  0.1675      0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643278     1  0.1749      0.834 0.932 0.000 0.000 0.036 0.008 0.024
#> SRR1643279     1  0.1675      0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643280     1  0.1675      0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643281     1  0.1675      0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643282     1  0.1675      0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643283     1  0.1675      0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643284     1  0.1675      0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643285     1  0.1749      0.835 0.932 0.000 0.000 0.036 0.008 0.024
#> SRR1643286     1  0.1675      0.835 0.936 0.000 0.000 0.032 0.008 0.024
#> SRR1643287     1  0.4233      0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643288     1  0.4290      0.546 0.668 0.000 0.000 0.296 0.008 0.028
#> SRR1643289     1  0.4233      0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643290     1  0.4252      0.555 0.676 0.000 0.000 0.288 0.008 0.028
#> SRR1643291     1  0.4252      0.555 0.676 0.000 0.000 0.288 0.008 0.028
#> SRR1643292     1  0.4233      0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643293     1  0.4233      0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643294     1  0.4233      0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643295     1  0.4233      0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643296     1  0.4233      0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643297     1  0.4290      0.550 0.668 0.000 0.000 0.296 0.008 0.028
#> SRR1643298     1  0.4233      0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643299     1  0.4233      0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643300     1  0.4233      0.559 0.680 0.000 0.000 0.284 0.008 0.028
#> SRR1643301     1  0.2036      0.831 0.916 0.000 0.000 0.048 0.008 0.028
#> SRR1643302     1  0.2036      0.831 0.916 0.000 0.000 0.048 0.008 0.028
#> SRR1643303     1  0.2036      0.831 0.916 0.000 0.000 0.048 0.008 0.028
#> SRR1643304     1  0.2036      0.831 0.916 0.000 0.000 0.048 0.008 0.028
#> SRR1643305     1  0.2164      0.830 0.908 0.000 0.000 0.056 0.008 0.028
#> SRR1643306     1  0.2563      0.824 0.880 0.000 0.000 0.084 0.008 0.028
#> SRR1643307     1  0.2036      0.831 0.916 0.000 0.000 0.048 0.008 0.028
#> SRR1643308     1  0.2177      0.830 0.908 0.000 0.000 0.052 0.008 0.032
#> SRR1643309     1  0.2022      0.832 0.916 0.000 0.000 0.052 0.008 0.024
#> SRR1643310     1  0.2036      0.831 0.916 0.000 0.000 0.048 0.008 0.028
#> SRR1643311     1  0.1957      0.831 0.920 0.000 0.000 0.048 0.008 0.024
#> SRR1643312     1  0.1957      0.831 0.920 0.000 0.000 0.048 0.008 0.024
#> SRR1643313     1  0.2036      0.831 0.916 0.000 0.000 0.048 0.008 0.028
#> SRR1643314     1  0.1518      0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643315     1  0.1518      0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643316     1  0.1518      0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643317     1  0.1405      0.837 0.948 0.000 0.000 0.024 0.004 0.024
#> SRR1643318     1  0.1518      0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643319     1  0.1599      0.836 0.940 0.000 0.000 0.028 0.008 0.024
#> SRR1643320     1  0.1518      0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643321     1  0.1518      0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643322     1  0.1518      0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643323     1  0.1518      0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643324     1  0.1518      0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643325     1  0.1518      0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643326     1  0.1518      0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643327     1  0.1518      0.836 0.944 0.000 0.000 0.024 0.008 0.024
#> SRR1643328     1  0.0820      0.839 0.972 0.000 0.000 0.012 0.000 0.016
#> SRR1643329     1  0.1003      0.839 0.964 0.000 0.000 0.020 0.000 0.016
#> SRR1643330     1  0.0820      0.839 0.972 0.000 0.000 0.012 0.000 0.016
#> SRR1643331     1  0.0717      0.839 0.976 0.000 0.000 0.008 0.000 0.016
#> SRR1643332     1  0.0914      0.839 0.968 0.000 0.000 0.016 0.000 0.016
#> SRR1643333     1  0.0717      0.839 0.976 0.000 0.000 0.008 0.000 0.016
#> SRR1643334     1  0.0717      0.839 0.976 0.000 0.000 0.008 0.000 0.016
#> SRR1643335     1  0.0717      0.839 0.976 0.000 0.000 0.008 0.000 0.016
#> SRR1643336     1  0.0717      0.839 0.976 0.000 0.000 0.008 0.000 0.016
#> SRR1643337     1  0.0717      0.839 0.976 0.000 0.000 0.008 0.000 0.016
#> SRR1643338     1  0.0717      0.839 0.976 0.000 0.000 0.008 0.000 0.016
#> SRR1643339     1  0.0717      0.839 0.976 0.000 0.000 0.008 0.000 0.016
#> SRR1643340     1  0.0820      0.839 0.972 0.000 0.000 0.012 0.000 0.016
#> SRR1643341     1  0.1168      0.839 0.956 0.000 0.000 0.028 0.000 0.016
#> SRR1643342     1  0.0820      0.839 0.972 0.000 0.000 0.012 0.000 0.016
#> SRR1643343     1  0.5036      0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643344     1  0.5036      0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643345     1  0.5036      0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643346     1  0.5036      0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643347     1  0.5036      0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643348     1  0.5036      0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643349     1  0.5036      0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643350     1  0.5036      0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643351     1  0.5036      0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643352     1  0.5036      0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643353     1  0.5036      0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643354     1  0.5036      0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643355     1  0.5036      0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643356     1  0.5036      0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643357     1  0.5036      0.734 0.708 0.000 0.004 0.040 0.088 0.160
#> SRR1643358     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643359     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643360     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643361     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643362     4  0.1806      0.985 0.088 0.000 0.000 0.908 0.000 0.004
#> SRR1643363     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643364     4  0.4698      0.586 0.268 0.000 0.064 0.660 0.000 0.008
#> SRR1643365     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643366     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643367     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643368     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643369     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643370     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643371     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643372     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643373     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643374     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643375     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643376     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643377     4  0.1806      0.985 0.088 0.000 0.000 0.908 0.000 0.004
#> SRR1643378     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643379     4  0.1858      0.982 0.092 0.000 0.000 0.904 0.000 0.004
#> SRR1643380     4  0.1814      0.982 0.100 0.000 0.000 0.900 0.000 0.000
#> SRR1643381     1  0.5751      0.332 0.508 0.000 0.108 0.364 0.000 0.020
#> SRR1643382     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643383     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643384     4  0.1858      0.985 0.092 0.000 0.000 0.904 0.000 0.004
#> SRR1643385     4  0.1714      0.985 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643386     4  0.1765      0.985 0.096 0.000 0.000 0.904 0.000 0.000
#> SRR1643387     4  0.1714      0.988 0.092 0.000 0.000 0.908 0.000 0.000
#> SRR1643388     4  0.1765      0.985 0.096 0.000 0.000 0.904 0.000 0.000
#> SRR1643389     4  0.1858      0.982 0.092 0.000 0.000 0.904 0.000 0.004
#> SRR1643390     1  0.0806      0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643391     1  0.0806      0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643392     1  0.0806      0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643393     1  0.0806      0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643394     1  0.0806      0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643395     1  0.0806      0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643396     1  0.1092      0.839 0.960 0.000 0.000 0.020 0.000 0.020
#> SRR1643397     1  0.0806      0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643398     1  0.0806      0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643399     1  0.0806      0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643400     1  0.0806      0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643401     1  0.0909      0.839 0.968 0.000 0.000 0.012 0.000 0.020
#> SRR1643402     1  0.0806      0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643403     1  0.0806      0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643404     1  0.0806      0.838 0.972 0.000 0.000 0.008 0.000 0.020
#> SRR1643405     1  0.4511      0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643406     1  0.4511      0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643407     1  0.4511      0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643408     1  0.4511      0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643409     1  0.4511      0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643410     1  0.4511      0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643411     1  0.4511      0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643412     1  0.4511      0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643413     1  0.4511      0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643414     1  0.4511      0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643415     1  0.4511      0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643416     1  0.4511      0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643417     1  0.4511      0.756 0.744 0.000 0.008 0.012 0.088 0.148
#> SRR1643418     6  0.3123      0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643419     6  0.3123      0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643420     6  0.3123      0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643421     6  0.3123      0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643422     6  0.3123      0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643423     6  0.3123      0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643424     6  0.3123      0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643425     6  0.3123      0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643426     6  0.3123      0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643427     6  0.3123      0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643428     6  0.3123      0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643429     6  0.3123      0.996 0.000 0.000 0.136 0.040 0.000 0.824
#> SRR1643430     6  0.3190      0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643431     6  0.3190      0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643432     6  0.3190      0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643433     6  0.3190      0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643434     6  0.3190      0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643435     6  0.3190      0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643436     6  0.3190      0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643437     6  0.3190      0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643438     6  0.3190      0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643439     6  0.3190      0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643440     6  0.3190      0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643441     6  0.3190      0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643442     6  0.3190      0.996 0.000 0.000 0.136 0.044 0.000 0.820
#> SRR1643443     2  0.0713      0.548 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643444     2  0.0937      0.535 0.000 0.960 0.000 0.000 0.040 0.000
#> SRR1643445     2  0.0713      0.548 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643446     2  0.0713      0.548 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643447     2  0.0547      0.555 0.000 0.980 0.000 0.000 0.020 0.000
#> SRR1643448     2  0.0458      0.558 0.000 0.984 0.000 0.000 0.016 0.000
#> SRR1643449     2  0.0632      0.552 0.000 0.976 0.000 0.000 0.024 0.000
#> SRR1643450     2  0.0632      0.552 0.000 0.976 0.000 0.000 0.024 0.000
#> SRR1643451     2  0.0713      0.548 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643452     2  0.0713      0.548 0.000 0.972 0.000 0.000 0.028 0.000
#> SRR1643453     2  0.0632      0.552 0.000 0.976 0.000 0.000 0.024 0.000
#> SRR1643454     2  0.0632      0.552 0.000 0.976 0.000 0.000 0.024 0.000
#> SRR1643455     2  0.0632      0.552 0.000 0.976 0.000 0.000 0.024 0.000
#> SRR1643456     2  0.1075      0.543 0.000 0.952 0.000 0.000 0.048 0.000
#> SRR1643457     2  0.1007      0.555 0.000 0.956 0.000 0.000 0.044 0.000
#> SRR1643458     2  0.0865      0.573 0.000 0.964 0.000 0.000 0.036 0.000
#> SRR1643459     2  0.2762      0.643 0.000 0.804 0.000 0.000 0.196 0.000
#> SRR1643460     2  0.1075      0.564 0.000 0.952 0.000 0.000 0.048 0.000
#> SRR1643461     2  0.1007      0.555 0.000 0.956 0.000 0.000 0.044 0.000
#> SRR1643462     2  0.1327      0.540 0.000 0.936 0.000 0.000 0.064 0.000
#> SRR1643463     2  0.1141      0.546 0.000 0.948 0.000 0.000 0.052 0.000
#> SRR1643464     2  0.1267      0.545 0.000 0.940 0.000 0.000 0.060 0.000
#> SRR1643466     2  0.1204      0.550 0.000 0.944 0.000 0.000 0.056 0.000
#> SRR1643467     2  0.0937      0.560 0.000 0.960 0.000 0.000 0.040 0.000
#> SRR1643468     2  0.3482      0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643469     2  0.3482      0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643470     2  0.3482      0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643471     2  0.3482      0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643472     2  0.3482      0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643473     2  0.3482      0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643474     2  0.3482      0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643475     2  0.3499      0.679 0.000 0.680 0.000 0.000 0.320 0.000
#> SRR1643477     2  0.3482      0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643478     2  0.3482      0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643479     2  0.3482      0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643480     2  0.3482      0.679 0.000 0.684 0.000 0.000 0.316 0.000
#> SRR1643481     2  0.1444      0.472 0.000 0.928 0.000 0.000 0.072 0.000
#> SRR1643482     2  0.1501      0.466 0.000 0.924 0.000 0.000 0.076 0.000
#> SRR1643483     2  0.1556      0.458 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643484     2  0.1501      0.465 0.000 0.924 0.000 0.000 0.076 0.000
#> SRR1643485     2  0.1556      0.458 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643486     2  0.1556      0.458 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643487     2  0.1556      0.458 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643488     2  0.1610      0.452 0.000 0.916 0.000 0.000 0.084 0.000
#> SRR1643489     2  0.1556      0.458 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643490     2  0.1267      0.490 0.000 0.940 0.000 0.000 0.060 0.000
#> SRR1643491     2  0.1501      0.466 0.000 0.924 0.000 0.000 0.076 0.000
#> SRR1643492     2  0.0547      0.548 0.000 0.980 0.000 0.000 0.020 0.000
#> SRR1643493     2  0.1387      0.478 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643494     2  0.1556      0.458 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643495     2  0.1556      0.458 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643496     2  0.1387      0.490 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643497     2  0.2048      0.371 0.000 0.880 0.000 0.000 0.120 0.000
#> SRR1643498     2  0.2048      0.371 0.000 0.880 0.000 0.000 0.120 0.000
#> SRR1643499     2  0.2048      0.371 0.000 0.880 0.000 0.000 0.120 0.000
#> SRR1643500     2  0.2048      0.371 0.000 0.880 0.000 0.000 0.120 0.000
#> SRR1643501     2  0.1814      0.420 0.000 0.900 0.000 0.000 0.100 0.000
#> SRR1643502     2  0.1765      0.428 0.000 0.904 0.000 0.000 0.096 0.000
#> SRR1643503     2  0.2048      0.371 0.000 0.880 0.000 0.000 0.120 0.000
#> SRR1643504     2  0.1204      0.496 0.000 0.944 0.000 0.000 0.056 0.000
#> SRR1643505     2  0.4620     -0.852 0.000 0.532 0.040 0.000 0.428 0.000
#> SRR1643506     2  0.2048      0.371 0.000 0.880 0.000 0.000 0.120 0.000
#> SRR1643507     2  0.1814      0.418 0.000 0.900 0.000 0.000 0.100 0.000
#> SRR1643508     2  0.1910      0.402 0.000 0.892 0.000 0.000 0.108 0.000
#> SRR1643509     2  0.1267      0.490 0.000 0.940 0.000 0.000 0.060 0.000
#> SRR1643510     2  0.1957      0.392 0.000 0.888 0.000 0.000 0.112 0.000
#> SRR1643511     2  0.1957      0.391 0.000 0.888 0.000 0.000 0.112 0.000
#> SRR1643512     2  0.2003      0.382 0.000 0.884 0.000 0.000 0.116 0.000
#> SRR1643513     2  0.1957      0.392 0.000 0.888 0.000 0.000 0.112 0.000
#> SRR1643531     5  0.4650      1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643532     5  0.4650      1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643533     5  0.4650      1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643534     5  0.4650      1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643535     5  0.4650      1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643536     5  0.4650      1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643537     5  0.4650      1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643538     5  0.4650      1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643539     5  0.4650      1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643540     5  0.4650      1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643541     5  0.4650      1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643542     5  0.4650      1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643543     5  0.4650      1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643544     5  0.4650      1.000 0.000 0.472 0.040 0.000 0.488 0.000
#> SRR1643514     2  0.3765      0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643515     2  0.3765      0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643516     2  0.3765      0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643517     2  0.3765      0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643518     2  0.3765      0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643519     2  0.3765      0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643520     2  0.3765      0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643521     2  0.3765      0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643522     2  0.3765      0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643523     2  0.3765      0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643524     2  0.3765      0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643525     2  0.3765      0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643526     2  0.3765      0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643527     2  0.3765      0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643528     2  0.3765      0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643529     2  0.3765      0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643530     2  0.3765      0.656 0.000 0.596 0.000 0.000 0.404 0.000
#> SRR1643545     2  0.3620      0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643546     2  0.3620      0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643547     2  0.3620      0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643548     2  0.3620      0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643549     2  0.3620      0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643550     2  0.4234      0.662 0.000 0.644 0.032 0.000 0.324 0.000
#> SRR1643551     2  0.3620      0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643552     2  0.3620      0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643553     2  0.3620      0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643554     2  0.3620      0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643555     2  0.3620      0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643556     2  0.3620      0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643558     2  0.3620      0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643559     2  0.3727      0.665 0.000 0.612 0.000 0.000 0.388 0.000
#> SRR1643560     2  0.3727      0.665 0.000 0.612 0.000 0.000 0.388 0.000
#> SRR1643561     2  0.3727      0.665 0.000 0.612 0.000 0.000 0.388 0.000
#> SRR1643562     2  0.3717      0.667 0.000 0.616 0.000 0.000 0.384 0.000
#> SRR1643563     2  0.3727      0.665 0.000 0.612 0.000 0.000 0.388 0.000
#> SRR1643564     2  0.3620      0.677 0.000 0.648 0.000 0.000 0.352 0.000
#> SRR1643565     2  0.3737      0.664 0.000 0.608 0.000 0.000 0.392 0.000
#> SRR1643566     2  0.3727      0.665 0.000 0.612 0.000 0.000 0.388 0.000
#> SRR1643567     2  0.3737      0.664 0.000 0.608 0.000 0.000 0.392 0.000
#> SRR1643568     2  0.3727      0.665 0.000 0.612 0.000 0.000 0.388 0.000
#> SRR1643569     2  0.3727      0.665 0.000 0.612 0.000 0.000 0.388 0.000
#> SRR1643570     2  0.3727      0.665 0.000 0.612 0.000 0.000 0.388 0.000
#> SRR1643571     2  0.3737      0.664 0.000 0.608 0.000 0.000 0.392 0.000
#> SRR1643572     2  0.3727      0.665 0.000 0.612 0.000 0.000 0.388 0.000

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-ATC-mclust-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-ATC-mclust-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-ATC-mclust-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-ATC-mclust-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-ATC-mclust-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-ATC-mclust-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-ATC-mclust-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-ATC-mclust-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-ATC-mclust-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-ATC-mclust-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-ATC-mclust-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-ATC-mclust-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-ATC-mclust-get-signatures-3

get_signatures(res, k = 5)

plot of chunk tab-ATC-mclust-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-ATC-mclust-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-ATC-mclust-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-ATC-mclust-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-ATC-mclust-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)

plot of chunk tab-ATC-mclust-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-ATC-mclust-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk ATC-mclust-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-ATC-mclust-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-ATC-mclust-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-ATC-mclust-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-ATC-mclust-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-ATC-mclust-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk ATC-mclust-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.


ATC:NMF**

The object with results only for a single top-value method and a single partition method can be extracted as:

res = res_list["ATC", "NMF"]
# you can also extract it by
# res = res_list["ATC:NMF"]

A summary of res and all the functions that can be applied to it:

res
#> A 'ConsensusPartition' object with k = 2, 3, 4, 5, 6.
#>   On a matrix with 15395 rows and 400 columns.
#>   Top rows (1000, 2000, 3000, 4000, 5000) are extracted by 'ATC' method.
#>   Subgroups are detected by 'NMF' method.
#>   Performed in total 1250 partitions by row resampling.
#>   Best k for subgroups seems to be 2.
#> 
#> Following methods can be applied to this 'ConsensusPartition' object:
#>  [1] "cola_report"             "collect_classes"         "collect_plots"          
#>  [4] "collect_stats"           "colnames"                "compare_signatures"     
#>  [7] "consensus_heatmap"       "dimension_reduction"     "functional_enrichment"  
#> [10] "get_anno_col"            "get_anno"                "get_classes"            
#> [13] "get_consensus"           "get_matrix"              "get_membership"         
#> [16] "get_param"               "get_signatures"          "get_stats"              
#> [19] "is_best_k"               "is_stable_k"             "membership_heatmap"     
#> [22] "ncol"                    "nrow"                    "plot_ecdf"              
#> [25] "rownames"                "select_partition_number" "show"                   
#> [28] "suggest_best_k"          "test_to_known_factors"

collect_plots() function collects all the plots made from res for all k (number of partitions) into one single page to provide an easy and fast comparison between different k.

collect_plots(res)

plot of chunk ATC-NMF-collect-plots

The plots are:

All the plots in panels can be made by individual functions and they are plotted later in this section.

select_partition_number() produces several plots showing different statistics for choosing “optimized” k. There are following statistics:

The detailed explanations of these statistics can be found in the cola vignette.

Generally speaking, lower PAC score, higher mean silhouette score or higher concordance corresponds to better partition. Rand index and Jaccard index measure how similar the current partition is compared to partition with k-1. If they are too similar, we won't accept k is better than k-1.

select_partition_number(res)

plot of chunk ATC-NMF-select-partition-number

The numeric values for all these statistics can be obtained by get_stats().

get_stats(res)
#>   k 1-PAC mean_silhouette concordance area_increased  Rand Jaccard
#> 2 2 1.000           1.000       1.000         0.4350 0.566   0.566
#> 3 3 0.761           0.830       0.913         0.3088 0.865   0.761
#> 4 4 0.800           0.884       0.917         0.0703 0.993   0.984
#> 5 5 0.807           0.879       0.902         0.1551 0.836   0.624
#> 6 6 0.762           0.793       0.817         0.0675 0.917   0.714

suggest_best_k() suggests the best \(k\) based on these statistics. The rules are as follows:

suggest_best_k(res)
#> [1] 2

Following shows the table of the partitions (You need to click the show/hide code output link to see it). The membership matrix (columns with name p*) is inferred by clue::cl_consensus() function with the SE method. Basically the value in the membership matrix represents the probability to belong to a certain group. The finall class label for an item is determined with the group with highest probability it belongs to.

In get_classes() function, the entropy is calculated from the membership matrix and the silhouette score is calculated from the consensus matrix.

show/hide code output

cbind(get_classes(res, k = 2), get_membership(res, k = 2))
#>            class entropy silhouette p1 p2
#> SRR1643167     1       0          1  1  0
#> SRR1643168     1       0          1  1  0
#> SRR1643169     1       0          1  1  0
#> SRR1643170     1       0          1  1  0
#> SRR1643171     1       0          1  1  0
#> SRR1643172     1       0          1  1  0
#> SRR1643173     1       0          1  1  0
#> SRR1643174     1       0          1  1  0
#> SRR1643175     1       0          1  1  0
#> SRR1643176     1       0          1  1  0
#> SRR1643177     1       0          1  1  0
#> SRR1643178     1       0          1  1  0
#> SRR1643180     1       0          1  1  0
#> SRR1643181     1       0          1  1  0
#> SRR1643182     1       0          1  1  0
#> SRR1643183     1       0          1  1  0
#> SRR1643184     1       0          1  1  0
#> SRR1643185     1       0          1  1  0
#> SRR1643186     1       0          1  1  0
#> SRR1643187     1       0          1  1  0
#> SRR1643188     1       0          1  1  0
#> SRR1643189     1       0          1  1  0
#> SRR1643190     1       0          1  1  0
#> SRR1643191     1       0          1  1  0
#> SRR1643192     1       0          1  1  0
#> SRR1643193     1       0          1  1  0
#> SRR1643194     1       0          1  1  0
#> SRR1643195     1       0          1  1  0
#> SRR1643196     1       0          1  1  0
#> SRR1643197     1       0          1  1  0
#> SRR1643198     1       0          1  1  0
#> SRR1643199     1       0          1  1  0
#> SRR1643200     1       0          1  1  0
#> SRR1643201     1       0          1  1  0
#> SRR1643202     1       0          1  1  0
#> SRR1643203     1       0          1  1  0
#> SRR1643204     1       0          1  1  0
#> SRR1643205     1       0          1  1  0
#> SRR1643206     1       0          1  1  0
#> SRR1643207     1       0          1  1  0
#> SRR1643208     1       0          1  1  0
#> SRR1643209     1       0          1  1  0
#> SRR1643210     1       0          1  1  0
#> SRR1643211     1       0          1  1  0
#> SRR1643212     1       0          1  1  0
#> SRR1643213     1       0          1  1  0
#> SRR1643214     1       0          1  1  0
#> SRR1643215     1       0          1  1  0
#> SRR1643216     1       0          1  1  0
#> SRR1643217     1       0          1  1  0
#> SRR1643218     1       0          1  1  0
#> SRR1643219     1       0          1  1  0
#> SRR1643220     1       0          1  1  0
#> SRR1643221     1       0          1  1  0
#> SRR1643222     1       0          1  1  0
#> SRR1643223     1       0          1  1  0
#> SRR1643224     1       0          1  1  0
#> SRR1643225     1       0          1  1  0
#> SRR1643226     1       0          1  1  0
#> SRR1643227     1       0          1  1  0
#> SRR1643228     1       0          1  1  0
#> SRR1643229     1       0          1  1  0
#> SRR1643230     1       0          1  1  0
#> SRR1643231     1       0          1  1  0
#> SRR1643232     1       0          1  1  0
#> SRR1643233     1       0          1  1  0
#> SRR1643234     1       0          1  1  0
#> SRR1643235     1       0          1  1  0
#> SRR1643236     1       0          1  1  0
#> SRR1643237     1       0          1  1  0
#> SRR1643238     1       0          1  1  0
#> SRR1643239     1       0          1  1  0
#> SRR1643240     1       0          1  1  0
#> SRR1643241     1       0          1  1  0
#> SRR1643242     1       0          1  1  0
#> SRR1643243     1       0          1  1  0
#> SRR1643245     1       0          1  1  0
#> SRR1643246     1       0          1  1  0
#> SRR1643247     1       0          1  1  0
#> SRR1643248     1       0          1  1  0
#> SRR1643249     1       0          1  1  0
#> SRR1643250     1       0          1  1  0
#> SRR1643251     1       0          1  1  0
#> SRR1643252     1       0          1  1  0
#> SRR1643253     1       0          1  1  0
#> SRR1643254     1       0          1  1  0
#> SRR1643255     1       0          1  1  0
#> SRR1643256     1       0          1  1  0
#> SRR1643257     1       0          1  1  0
#> SRR1643258     1       0          1  1  0
#> SRR1643259     1       0          1  1  0
#> SRR1643260     1       0          1  1  0
#> SRR1643261     1       0          1  1  0
#> SRR1643262     1       0          1  1  0
#> SRR1643263     1       0          1  1  0
#> SRR1643264     1       0          1  1  0
#> SRR1643266     1       0          1  1  0
#> SRR1643267     1       0          1  1  0
#> SRR1643268     1       0          1  1  0
#> SRR1643269     1       0          1  1  0
#> SRR1643270     1       0          1  1  0
#> SRR1643271     1       0          1  1  0
#> SRR1643272     1       0          1  1  0
#> SRR1643273     1       0          1  1  0
#> SRR1643274     1       0          1  1  0
#> SRR1643275     1       0          1  1  0
#> SRR1643276     1       0          1  1  0
#> SRR1643277     1       0          1  1  0
#> SRR1643278     1       0          1  1  0
#> SRR1643279     1       0          1  1  0
#> SRR1643280     1       0          1  1  0
#> SRR1643281     1       0          1  1  0
#> SRR1643282     1       0          1  1  0
#> SRR1643283     1       0          1  1  0
#> SRR1643284     1       0          1  1  0
#> SRR1643285     1       0          1  1  0
#> SRR1643286     1       0          1  1  0
#> SRR1643287     1       0          1  1  0
#> SRR1643288     1       0          1  1  0
#> SRR1643289     1       0          1  1  0
#> SRR1643290     1       0          1  1  0
#> SRR1643291     1       0          1  1  0
#> SRR1643292     1       0          1  1  0
#> SRR1643293     1       0          1  1  0
#> SRR1643294     1       0          1  1  0
#> SRR1643295     1       0          1  1  0
#> SRR1643296     1       0          1  1  0
#> SRR1643297     1       0          1  1  0
#> SRR1643298     1       0          1  1  0
#> SRR1643299     1       0          1  1  0
#> SRR1643300     1       0          1  1  0
#> SRR1643301     1       0          1  1  0
#> SRR1643302     1       0          1  1  0
#> SRR1643303     1       0          1  1  0
#> SRR1643304     1       0          1  1  0
#> SRR1643305     1       0          1  1  0
#> SRR1643306     1       0          1  1  0
#> SRR1643307     1       0          1  1  0
#> SRR1643308     1       0          1  1  0
#> SRR1643309     1       0          1  1  0
#> SRR1643310     1       0          1  1  0
#> SRR1643311     1       0          1  1  0
#> SRR1643312     1       0          1  1  0
#> SRR1643313     1       0          1  1  0
#> SRR1643314     1       0          1  1  0
#> SRR1643315     1       0          1  1  0
#> SRR1643316     1       0          1  1  0
#> SRR1643317     1       0          1  1  0
#> SRR1643318     1       0          1  1  0
#> SRR1643319     1       0          1  1  0
#> SRR1643320     1       0          1  1  0
#> SRR1643321     1       0          1  1  0
#> SRR1643322     1       0          1  1  0
#> SRR1643323     1       0          1  1  0
#> SRR1643324     1       0          1  1  0
#> SRR1643325     1       0          1  1  0
#> SRR1643326     1       0          1  1  0
#> SRR1643327     1       0          1  1  0
#> SRR1643328     1       0          1  1  0
#> SRR1643329     1       0          1  1  0
#> SRR1643330     1       0          1  1  0
#> SRR1643331     1       0          1  1  0
#> SRR1643332     1       0          1  1  0
#> SRR1643333     1       0          1  1  0
#> SRR1643334     1       0          1  1  0
#> SRR1643335     1       0          1  1  0
#> SRR1643336     1       0          1  1  0
#> SRR1643337     1       0          1  1  0
#> SRR1643338     1       0          1  1  0
#> SRR1643339     1       0          1  1  0
#> SRR1643340     1       0          1  1  0
#> SRR1643341     1       0          1  1  0
#> SRR1643342     1       0          1  1  0
#> SRR1643343     1       0          1  1  0
#> SRR1643344     1       0          1  1  0
#> SRR1643345     1       0          1  1  0
#> SRR1643346     1       0          1  1  0
#> SRR1643347     1       0          1  1  0
#> SRR1643348     1       0          1  1  0
#> SRR1643349     1       0          1  1  0
#> SRR1643350     1       0          1  1  0
#> SRR1643351     1       0          1  1  0
#> SRR1643352     1       0          1  1  0
#> SRR1643353     1       0          1  1  0
#> SRR1643354     1       0          1  1  0
#> SRR1643355     1       0          1  1  0
#> SRR1643356     1       0          1  1  0
#> SRR1643357     1       0          1  1  0
#> SRR1643358     1       0          1  1  0
#> SRR1643359     1       0          1  1  0
#> SRR1643360     1       0          1  1  0
#> SRR1643361     1       0          1  1  0
#> SRR1643362     1       0          1  1  0
#> SRR1643363     1       0          1  1  0
#> SRR1643364     1       0          1  1  0
#> SRR1643365     1       0          1  1  0
#> SRR1643366     1       0          1  1  0
#> SRR1643367     1       0          1  1  0
#> SRR1643368     1       0          1  1  0
#> SRR1643369     1       0          1  1  0
#> SRR1643370     1       0          1  1  0
#> SRR1643371     1       0          1  1  0
#> SRR1643372     1       0          1  1  0
#> SRR1643373     1       0          1  1  0
#> SRR1643374     1       0          1  1  0
#> SRR1643375     1       0          1  1  0
#> SRR1643376     1       0          1  1  0
#> SRR1643377     1       0          1  1  0
#> SRR1643378     1       0          1  1  0
#> SRR1643379     1       0          1  1  0
#> SRR1643380     1       0          1  1  0
#> SRR1643381     1       0          1  1  0
#> SRR1643382     1       0          1  1  0
#> SRR1643383     1       0          1  1  0
#> SRR1643384     1       0          1  1  0
#> SRR1643385     1       0          1  1  0
#> SRR1643386     1       0          1  1  0
#> SRR1643387     1       0          1  1  0
#> SRR1643388     1       0          1  1  0
#> SRR1643389     1       0          1  1  0
#> SRR1643390     1       0          1  1  0
#> SRR1643391     1       0          1  1  0
#> SRR1643392     1       0          1  1  0
#> SRR1643393     1       0          1  1  0
#> SRR1643394     1       0          1  1  0
#> SRR1643395     1       0          1  1  0
#> SRR1643396     1       0          1  1  0
#> SRR1643397     1       0          1  1  0
#> SRR1643398     1       0          1  1  0
#> SRR1643399     1       0          1  1  0
#> SRR1643400     1       0          1  1  0
#> SRR1643401     1       0          1  1  0
#> SRR1643402     1       0          1  1  0
#> SRR1643403     1       0          1  1  0
#> SRR1643404     1       0          1  1  0
#> SRR1643405     1       0          1  1  0
#> SRR1643406     1       0          1  1  0
#> SRR1643407     1       0          1  1  0
#> SRR1643408     1       0          1  1  0
#> SRR1643409     1       0          1  1  0
#> SRR1643410     1       0          1  1  0
#> SRR1643411     1       0          1  1  0
#> SRR1643412     1       0          1  1  0
#> SRR1643413     1       0          1  1  0
#> SRR1643414     1       0          1  1  0
#> SRR1643415     1       0          1  1  0
#> SRR1643416     1       0          1  1  0
#> SRR1643417     1       0          1  1  0
#> SRR1643418     1       0          1  1  0
#> SRR1643419     1       0          1  1  0
#> SRR1643420     1       0          1  1  0
#> SRR1643421     1       0          1  1  0
#> SRR1643422     1       0          1  1  0
#> SRR1643423     1       0          1  1  0
#> SRR1643424     1       0          1  1  0
#> SRR1643425     1       0          1  1  0
#> SRR1643426     1       0          1  1  0
#> SRR1643427     1       0          1  1  0
#> SRR1643428     1       0          1  1  0
#> SRR1643429     1       0          1  1  0
#> SRR1643430     1       0          1  1  0
#> SRR1643431     1       0          1  1  0
#> SRR1643432     1       0          1  1  0
#> SRR1643433     1       0          1  1  0
#> SRR1643434     1       0          1  1  0
#> SRR1643435     1       0          1  1  0
#> SRR1643436     1       0          1  1  0
#> SRR1643437     1       0          1  1  0
#> SRR1643438     1       0          1  1  0
#> SRR1643439     1       0          1  1  0
#> SRR1643440     1       0          1  1  0
#> SRR1643441     1       0          1  1  0
#> SRR1643442     1       0          1  1  0
#> SRR1643443     2       0          1  0  1
#> SRR1643444     2       0          1  0  1
#> SRR1643445     2       0          1  0  1
#> SRR1643446     2       0          1  0  1
#> SRR1643447     2       0          1  0  1
#> SRR1643448     2       0          1  0  1
#> SRR1643449     2       0          1  0  1
#> SRR1643450     2       0          1  0  1
#> SRR1643451     2       0          1  0  1
#> SRR1643452     2       0          1  0  1
#> SRR1643453     2       0          1  0  1
#> SRR1643454     2       0          1  0  1
#> SRR1643455     2       0          1  0  1
#> SRR1643456     2       0          1  0  1
#> SRR1643457     2       0          1  0  1
#> SRR1643458     2       0          1  0  1
#> SRR1643459     2       0          1  0  1
#> SRR1643460     2       0          1  0  1
#> SRR1643461     2       0          1  0  1
#> SRR1643462     2       0          1  0  1
#> SRR1643463     2       0          1  0  1
#> SRR1643464     2       0          1  0  1
#> SRR1643466     2       0          1  0  1
#> SRR1643467     2       0          1  0  1
#> SRR1643468     2       0          1  0  1
#> SRR1643469     2       0          1  0  1
#> SRR1643470     2       0          1  0  1
#> SRR1643471     2       0          1  0  1
#> SRR1643472     2       0          1  0  1
#> SRR1643473     2       0          1  0  1
#> SRR1643474     2       0          1  0  1
#> SRR1643475     2       0          1  0  1
#> SRR1643477     2       0          1  0  1
#> SRR1643478     2       0          1  0  1
#> SRR1643479     2       0          1  0  1
#> SRR1643480     2       0          1  0  1
#> SRR1643481     2       0          1  0  1
#> SRR1643482     2       0          1  0  1
#> SRR1643483     2       0          1  0  1
#> SRR1643484     2       0          1  0  1
#> SRR1643485     2       0          1  0  1
#> SRR1643486     2       0          1  0  1
#> SRR1643487     2       0          1  0  1
#> SRR1643488     2       0          1  0  1
#> SRR1643489     2       0          1  0  1
#> SRR1643490     2       0          1  0  1
#> SRR1643491     2       0          1  0  1
#> SRR1643492     2       0          1  0  1
#> SRR1643493     2       0          1  0  1
#> SRR1643494     2       0          1  0  1
#> SRR1643495     2       0          1  0  1
#> SRR1643496     2       0          1  0  1
#> SRR1643497     2       0          1  0  1
#> SRR1643498     2       0          1  0  1
#> SRR1643499     2       0          1  0  1
#> SRR1643500     2       0          1  0  1
#> SRR1643501     2       0          1  0  1
#> SRR1643502     2       0          1  0  1
#> SRR1643503     2       0          1  0  1
#> SRR1643504     2       0          1  0  1
#> SRR1643505     2       0          1  0  1
#> SRR1643506     2       0          1  0  1
#> SRR1643507     2       0          1  0  1
#> SRR1643508     2       0          1  0  1
#> SRR1643509     2       0          1  0  1
#> SRR1643510     2       0          1  0  1
#> SRR1643511     2       0          1  0  1
#> SRR1643512     2       0          1  0  1
#> SRR1643513     2       0          1  0  1
#> SRR1643531     2       0          1  0  1
#> SRR1643532     2       0          1  0  1
#> SRR1643533     2       0          1  0  1
#> SRR1643534     2       0          1  0  1
#> SRR1643535     2       0          1  0  1
#> SRR1643536     2       0          1  0  1
#> SRR1643537     2       0          1  0  1
#> SRR1643538     2       0          1  0  1
#> SRR1643539     2       0          1  0  1
#> SRR1643540     2       0          1  0  1
#> SRR1643541     2       0          1  0  1
#> SRR1643542     2       0          1  0  1
#> SRR1643543     2       0          1  0  1
#> SRR1643544     2       0          1  0  1
#> SRR1643514     2       0          1  0  1
#> SRR1643515     2       0          1  0  1
#> SRR1643516     2       0          1  0  1
#> SRR1643517     2       0          1  0  1
#> SRR1643518     2       0          1  0  1
#> SRR1643519     2       0          1  0  1
#> SRR1643520     2       0          1  0  1
#> SRR1643521     2       0          1  0  1
#> SRR1643522     2       0          1  0  1
#> SRR1643523     2       0          1  0  1
#> SRR1643524     2       0          1  0  1
#> SRR1643525     2       0          1  0  1
#> SRR1643526     2       0          1  0  1
#> SRR1643527     2       0          1  0  1
#> SRR1643528     2       0          1  0  1
#> SRR1643529     2       0          1  0  1
#> SRR1643530     2       0          1  0  1
#> SRR1643545     2       0          1  0  1
#> SRR1643546     2       0          1  0  1
#> SRR1643547     2       0          1  0  1
#> SRR1643548     2       0          1  0  1
#> SRR1643549     2       0          1  0  1
#> SRR1643550     2       0          1  0  1
#> SRR1643551     2       0          1  0  1
#> SRR1643552     2       0          1  0  1
#> SRR1643553     2       0          1  0  1
#> SRR1643554     2       0          1  0  1
#> SRR1643555     2       0          1  0  1
#> SRR1643556     2       0          1  0  1
#> SRR1643558     2       0          1  0  1
#> SRR1643559     2       0          1  0  1
#> SRR1643560     2       0          1  0  1
#> SRR1643561     2       0          1  0  1
#> SRR1643562     2       0          1  0  1
#> SRR1643563     2       0          1  0  1
#> SRR1643564     2       0          1  0  1
#> SRR1643565     2       0          1  0  1
#> SRR1643566     2       0          1  0  1
#> SRR1643567     2       0          1  0  1
#> SRR1643568     2       0          1  0  1
#> SRR1643569     2       0          1  0  1
#> SRR1643570     2       0          1  0  1
#> SRR1643571     2       0          1  0  1
#> SRR1643572     2       0          1  0  1

show/hide code output

cbind(get_classes(res, k = 3), get_membership(res, k = 3))
#>            class entropy silhouette    p1 p2    p3
#> SRR1643167     1  0.5178     0.5881 0.744  0 0.256
#> SRR1643168     1  0.5178     0.5881 0.744  0 0.256
#> SRR1643169     1  0.5058     0.6100 0.756  0 0.244
#> SRR1643170     1  0.5178     0.5881 0.744  0 0.256
#> SRR1643171     1  0.5591     0.4829 0.696  0 0.304
#> SRR1643172     1  0.5591     0.4829 0.696  0 0.304
#> SRR1643173     1  0.5621     0.4727 0.692  0 0.308
#> SRR1643174     1  0.5591     0.4832 0.696  0 0.304
#> SRR1643175     1  0.2878     0.8027 0.904  0 0.096
#> SRR1643176     1  0.2878     0.8027 0.904  0 0.096
#> SRR1643177     1  0.2711     0.8098 0.912  0 0.088
#> SRR1643178     1  0.2959     0.7988 0.900  0 0.100
#> SRR1643180     1  0.6026     0.2674 0.624  0 0.376
#> SRR1643181     1  0.6111     0.1911 0.604  0 0.396
#> SRR1643182     1  0.6111     0.1908 0.604  0 0.396
#> SRR1643183     1  0.4452     0.6902 0.808  0 0.192
#> SRR1643184     1  0.4605     0.6734 0.796  0 0.204
#> SRR1643185     1  0.4750     0.6559 0.784  0 0.216
#> SRR1643186     1  0.4605     0.6734 0.796  0 0.204
#> SRR1643187     1  0.2711     0.8079 0.912  0 0.088
#> SRR1643188     1  0.2796     0.8045 0.908  0 0.092
#> SRR1643189     1  0.2625     0.8113 0.916  0 0.084
#> SRR1643190     1  0.2711     0.8079 0.912  0 0.088
#> SRR1643191     3  0.5948     0.7449 0.360  0 0.640
#> SRR1643192     3  0.5948     0.7449 0.360  0 0.640
#> SRR1643193     1  0.2796     0.8053 0.908  0 0.092
#> SRR1643194     1  0.2796     0.8053 0.908  0 0.092
#> SRR1643195     1  0.0237     0.8577 0.996  0 0.004
#> SRR1643196     1  0.0237     0.8577 0.996  0 0.004
#> SRR1643197     1  0.3482     0.7697 0.872  0 0.128
#> SRR1643198     1  0.3412     0.7739 0.876  0 0.124
#> SRR1643199     1  0.5254     0.5724 0.736  0 0.264
#> SRR1643200     1  0.5216     0.5802 0.740  0 0.260
#> SRR1643201     1  0.2537     0.8137 0.920  0 0.080
#> SRR1643202     1  0.2537     0.8137 0.920  0 0.080
#> SRR1643203     1  0.3686     0.7566 0.860  0 0.140
#> SRR1643204     1  0.3686     0.7566 0.860  0 0.140
#> SRR1643205     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643206     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643207     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643208     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643209     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643210     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643211     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643212     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643213     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643214     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643215     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643216     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643217     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643218     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643219     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643220     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643221     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643222     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643223     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643224     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643225     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643226     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643227     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643228     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643229     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643230     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643231     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643232     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643233     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643234     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643235     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643236     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643237     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643238     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643239     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643240     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643241     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643242     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643243     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643245     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643246     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643247     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643248     3  0.4974     0.9733 0.236  0 0.764
#> SRR1643249     3  0.5016     0.9676 0.240  0 0.760
#> SRR1643250     1  0.0237     0.8577 0.996  0 0.004
#> SRR1643251     1  0.0237     0.8577 0.996  0 0.004
#> SRR1643252     1  0.0237     0.8577 0.996  0 0.004
#> SRR1643253     1  0.0237     0.8577 0.996  0 0.004
#> SRR1643254     1  0.0237     0.8577 0.996  0 0.004
#> SRR1643255     1  0.0237     0.8577 0.996  0 0.004
#> SRR1643256     1  0.0237     0.8577 0.996  0 0.004
#> SRR1643257     1  0.0237     0.8577 0.996  0 0.004
#> SRR1643258     1  0.0237     0.8577 0.996  0 0.004
#> SRR1643259     1  0.0237     0.8577 0.996  0 0.004
#> SRR1643260     1  0.0237     0.8577 0.996  0 0.004
#> SRR1643261     1  0.0424     0.8575 0.992  0 0.008
#> SRR1643262     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643263     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643264     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643266     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643267     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643268     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643269     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643270     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643271     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643272     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643273     1  0.1163     0.8520 0.972  0 0.028
#> SRR1643274     1  0.1411     0.8480 0.964  0 0.036
#> SRR1643275     1  0.1163     0.8520 0.972  0 0.028
#> SRR1643276     1  0.1163     0.8520 0.972  0 0.028
#> SRR1643277     1  0.1411     0.8480 0.964  0 0.036
#> SRR1643278     1  0.0747     0.8559 0.984  0 0.016
#> SRR1643279     1  0.0892     0.8550 0.980  0 0.020
#> SRR1643280     1  0.1289     0.8502 0.968  0 0.032
#> SRR1643281     1  0.0892     0.8550 0.980  0 0.020
#> SRR1643282     1  0.1289     0.8502 0.968  0 0.032
#> SRR1643283     1  0.1163     0.8520 0.972  0 0.028
#> SRR1643284     1  0.1289     0.8502 0.968  0 0.032
#> SRR1643285     1  0.1529     0.8456 0.960  0 0.040
#> SRR1643286     1  0.1411     0.8483 0.964  0 0.036
#> SRR1643287     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643288     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643289     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643290     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643291     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643292     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643293     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643294     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643295     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643296     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643297     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643298     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643299     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643300     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643301     1  0.0424     0.8574 0.992  0 0.008
#> SRR1643302     1  0.0424     0.8574 0.992  0 0.008
#> SRR1643303     1  0.0424     0.8574 0.992  0 0.008
#> SRR1643304     1  0.0424     0.8574 0.992  0 0.008
#> SRR1643305     1  0.0237     0.8577 0.996  0 0.004
#> SRR1643306     1  0.0424     0.8574 0.992  0 0.008
#> SRR1643307     1  0.0424     0.8574 0.992  0 0.008
#> SRR1643308     1  0.0237     0.8577 0.996  0 0.004
#> SRR1643309     1  0.0424     0.8574 0.992  0 0.008
#> SRR1643310     1  0.0237     0.8577 0.996  0 0.004
#> SRR1643311     1  0.0424     0.8574 0.992  0 0.008
#> SRR1643312     1  0.0592     0.8567 0.988  0 0.012
#> SRR1643313     1  0.0592     0.8567 0.988  0 0.012
#> SRR1643314     1  0.1529     0.8457 0.960  0 0.040
#> SRR1643315     1  0.1289     0.8502 0.968  0 0.032
#> SRR1643316     1  0.0892     0.8549 0.980  0 0.020
#> SRR1643317     1  0.1289     0.8503 0.968  0 0.032
#> SRR1643318     1  0.1753     0.8404 0.952  0 0.048
#> SRR1643319     1  0.1289     0.8505 0.968  0 0.032
#> SRR1643320     1  0.1031     0.8536 0.976  0 0.024
#> SRR1643321     1  0.1411     0.8481 0.964  0 0.036
#> SRR1643322     1  0.1163     0.8519 0.972  0 0.028
#> SRR1643323     1  0.1643     0.8430 0.956  0 0.044
#> SRR1643324     1  0.0892     0.8549 0.980  0 0.020
#> SRR1643325     1  0.1753     0.8404 0.952  0 0.048
#> SRR1643326     1  0.1529     0.8457 0.960  0 0.040
#> SRR1643327     1  0.1411     0.8482 0.964  0 0.036
#> SRR1643328     1  0.6204     0.0635 0.576  0 0.424
#> SRR1643329     1  0.6309    -0.2910 0.504  0 0.496
#> SRR1643330     1  0.6305    -0.2384 0.516  0 0.484
#> SRR1643331     1  0.5905     0.3475 0.648  0 0.352
#> SRR1643332     1  0.6286    -0.1437 0.536  0 0.464
#> SRR1643333     1  0.6168     0.1213 0.588  0 0.412
#> SRR1643334     1  0.5926     0.3349 0.644  0 0.356
#> SRR1643335     1  0.6168     0.1212 0.588  0 0.412
#> SRR1643336     1  0.6168     0.1208 0.588  0 0.412
#> SRR1643337     1  0.5905     0.3476 0.648  0 0.352
#> SRR1643338     1  0.6168     0.1212 0.588  0 0.412
#> SRR1643339     1  0.6095     0.2056 0.608  0 0.392
#> SRR1643340     1  0.6215     0.0436 0.572  0 0.428
#> SRR1643341     1  0.6305    -0.2380 0.516  0 0.484
#> SRR1643342     1  0.6126     0.1738 0.600  0 0.400
#> SRR1643343     1  0.0892     0.8549 0.980  0 0.020
#> SRR1643344     1  0.0747     0.8559 0.984  0 0.016
#> SRR1643345     1  0.0892     0.8549 0.980  0 0.020
#> SRR1643346     1  0.0892     0.8549 0.980  0 0.020
#> SRR1643347     1  0.0892     0.8549 0.980  0 0.020
#> SRR1643348     1  0.0892     0.8549 0.980  0 0.020
#> SRR1643349     1  0.0747     0.8559 0.984  0 0.016
#> SRR1643350     1  0.0747     0.8559 0.984  0 0.016
#> SRR1643351     1  0.0892     0.8549 0.980  0 0.020
#> SRR1643352     1  0.0747     0.8559 0.984  0 0.016
#> SRR1643353     1  0.0892     0.8549 0.980  0 0.020
#> SRR1643354     1  0.0892     0.8549 0.980  0 0.020
#> SRR1643355     1  0.0424     0.8575 0.992  0 0.008
#> SRR1643356     1  0.0892     0.8549 0.980  0 0.020
#> SRR1643357     1  0.0892     0.8549 0.980  0 0.020
#> SRR1643358     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643359     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643360     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643361     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643362     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643363     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643364     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643365     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643366     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643367     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643368     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643369     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643370     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643371     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643372     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643373     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643374     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643375     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643376     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643377     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643378     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643379     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643380     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643381     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643382     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643383     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643384     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643385     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643386     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643387     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643388     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643389     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643390     1  0.5098     0.6026 0.752  0 0.248
#> SRR1643391     1  0.5216     0.5802 0.740  0 0.260
#> SRR1643392     1  0.5785     0.4079 0.668  0 0.332
#> SRR1643393     1  0.4974     0.6237 0.764  0 0.236
#> SRR1643394     1  0.5529     0.5021 0.704  0 0.296
#> SRR1643395     1  0.5291     0.5638 0.732  0 0.268
#> SRR1643396     1  0.4887     0.6366 0.772  0 0.228
#> SRR1643397     1  0.5098     0.6024 0.752  0 0.248
#> SRR1643398     1  0.4974     0.6234 0.764  0 0.236
#> SRR1643399     1  0.5058     0.6099 0.756  0 0.244
#> SRR1643400     1  0.5363     0.5472 0.724  0 0.276
#> SRR1643401     1  0.5529     0.5022 0.704  0 0.296
#> SRR1643402     1  0.5291     0.5639 0.732  0 0.268
#> SRR1643403     1  0.5098     0.6035 0.752  0 0.248
#> SRR1643404     1  0.5058     0.6098 0.756  0 0.244
#> SRR1643405     1  0.6267    -0.0882 0.548  0 0.452
#> SRR1643406     1  0.6204     0.0626 0.576  0 0.424
#> SRR1643407     3  0.6280     0.4501 0.460  0 0.540
#> SRR1643408     1  0.6309    -0.2921 0.504  0 0.496
#> SRR1643409     1  0.6215     0.0421 0.572  0 0.428
#> SRR1643410     1  0.6154     0.1380 0.592  0 0.408
#> SRR1643411     1  0.6252    -0.0461 0.556  0 0.444
#> SRR1643412     1  0.6309    -0.2931 0.504  0 0.496
#> SRR1643413     3  0.6309     0.3097 0.496  0 0.504
#> SRR1643414     1  0.6140     0.1559 0.596  0 0.404
#> SRR1643415     1  0.6274    -0.1046 0.544  0 0.456
#> SRR1643416     1  0.6291    -0.1632 0.532  0 0.468
#> SRR1643417     1  0.6252    -0.0438 0.556  0 0.444
#> SRR1643418     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643419     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643420     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643421     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643422     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643423     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643424     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643425     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643426     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643427     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643428     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643429     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643430     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643431     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643432     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643433     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643434     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643435     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643436     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643437     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643438     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643439     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643440     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643441     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643442     1  0.0000     0.8575 1.000  0 0.000
#> SRR1643443     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643444     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643445     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643446     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643447     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643448     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643449     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643450     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643451     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643452     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643453     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643454     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643455     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643456     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643457     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643458     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643459     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643460     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643461     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643462     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643463     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643464     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643466     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643467     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643468     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643469     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643470     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643471     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643472     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643473     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643474     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643475     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643477     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643478     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643479     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643480     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643481     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643482     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643483     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643484     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643485     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643486     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643487     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643488     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643489     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643490     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643491     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643492     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643493     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643494     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643495     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643496     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643497     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643498     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643499     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643500     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643501     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643502     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643503     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643504     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643505     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643506     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643507     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643508     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643509     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643510     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643511     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643512     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643513     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643531     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643532     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643533     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643534     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643535     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643536     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643537     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643538     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643539     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643540     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643541     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643542     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643543     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643544     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643514     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643515     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643516     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643517     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643518     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643519     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643520     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643521     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643522     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643523     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643524     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643525     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643526     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643527     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643528     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643529     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643530     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643545     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643546     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643547     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643548     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643549     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643550     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643551     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643552     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643553     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643554     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643555     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643556     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643558     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643559     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643560     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643561     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643562     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643563     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643564     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643565     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643566     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643567     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643568     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643569     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643570     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643571     2  0.0000     1.0000 0.000  1 0.000
#> SRR1643572     2  0.0000     1.0000 0.000  1 0.000

show/hide code output

cbind(get_classes(res, k = 4), get_membership(res, k = 4))
#>            class entropy silhouette    p1    p2    p3    p4
#> SRR1643167     1  0.5962      0.761 0.692 0.000 0.180 0.128
#> SRR1643168     1  0.5962      0.761 0.692 0.000 0.180 0.128
#> SRR1643169     1  0.5923      0.765 0.696 0.000 0.176 0.128
#> SRR1643170     1  0.6039      0.755 0.684 0.000 0.188 0.128
#> SRR1643171     1  0.6147      0.744 0.672 0.000 0.200 0.128
#> SRR1643172     1  0.6147      0.744 0.672 0.000 0.200 0.128
#> SRR1643173     1  0.6181      0.740 0.668 0.000 0.204 0.128
#> SRR1643174     1  0.6147      0.744 0.672 0.000 0.200 0.128
#> SRR1643175     1  0.5116      0.809 0.764 0.000 0.108 0.128
#> SRR1643176     1  0.5006      0.814 0.772 0.000 0.104 0.124
#> SRR1643177     1  0.4827      0.819 0.784 0.000 0.092 0.124
#> SRR1643178     1  0.5063      0.812 0.768 0.000 0.108 0.124
#> SRR1643180     1  0.6296      0.721 0.652 0.000 0.224 0.124
#> SRR1643181     1  0.6296      0.721 0.652 0.000 0.224 0.124
#> SRR1643182     1  0.6357      0.712 0.644 0.000 0.232 0.124
#> SRR1643183     1  0.5883      0.767 0.700 0.000 0.172 0.128
#> SRR1643184     1  0.5923      0.764 0.696 0.000 0.176 0.128
#> SRR1643185     1  0.5923      0.764 0.696 0.000 0.176 0.128
#> SRR1643186     1  0.5842      0.771 0.704 0.000 0.168 0.128
#> SRR1643187     1  0.4552      0.827 0.800 0.000 0.072 0.128
#> SRR1643188     1  0.4552      0.827 0.800 0.000 0.072 0.128
#> SRR1643189     1  0.4552      0.827 0.800 0.000 0.072 0.128
#> SRR1643190     1  0.4552      0.827 0.800 0.000 0.072 0.128
#> SRR1643191     3  0.6985     -0.169 0.404 0.000 0.480 0.116
#> SRR1643192     3  0.6985     -0.169 0.404 0.000 0.480 0.116
#> SRR1643193     1  0.4827      0.819 0.784 0.000 0.092 0.124
#> SRR1643194     1  0.4827      0.819 0.784 0.000 0.092 0.124
#> SRR1643195     1  0.3105      0.845 0.868 0.000 0.012 0.120
#> SRR1643196     1  0.3047      0.846 0.872 0.000 0.012 0.116
#> SRR1643197     1  0.4948      0.815 0.776 0.000 0.100 0.124
#> SRR1643198     1  0.4948      0.815 0.776 0.000 0.100 0.124
#> SRR1643199     1  0.6075      0.752 0.680 0.000 0.192 0.128
#> SRR1643200     1  0.6039      0.755 0.684 0.000 0.188 0.128
#> SRR1643201     1  0.4356      0.832 0.812 0.000 0.064 0.124
#> SRR1643202     1  0.4356      0.832 0.812 0.000 0.064 0.124
#> SRR1643203     1  0.5332      0.800 0.748 0.000 0.124 0.128
#> SRR1643204     1  0.5383      0.798 0.744 0.000 0.128 0.128
#> SRR1643205     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643206     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643207     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643208     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643209     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643210     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643211     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643212     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643213     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643214     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643215     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643216     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643217     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643218     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643219     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643220     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643221     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643222     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643223     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643224     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643225     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643226     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643227     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643228     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643229     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643230     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643231     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643232     3  0.0469      0.964 0.012 0.000 0.988 0.000
#> SRR1643233     3  0.0188      0.967 0.000 0.000 0.996 0.004
#> SRR1643234     3  0.0188      0.967 0.000 0.000 0.996 0.004
#> SRR1643235     3  0.0336      0.969 0.008 0.000 0.992 0.000
#> SRR1643236     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643237     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643238     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643239     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643240     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643241     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643242     3  0.0000      0.969 0.000 0.000 1.000 0.000
#> SRR1643243     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643245     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643246     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643247     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643248     3  0.0188      0.973 0.004 0.000 0.996 0.000
#> SRR1643249     3  0.0188      0.967 0.000 0.000 0.996 0.004
#> SRR1643250     1  0.0779      0.858 0.980 0.000 0.004 0.016
#> SRR1643251     1  0.0657      0.858 0.984 0.000 0.004 0.012
#> SRR1643252     1  0.0657      0.858 0.984 0.000 0.004 0.012
#> SRR1643253     1  0.0657      0.858 0.984 0.000 0.004 0.012
#> SRR1643254     1  0.0657      0.858 0.984 0.000 0.004 0.012
#> SRR1643255     1  0.0657      0.858 0.984 0.000 0.004 0.012
#> SRR1643256     1  0.0469      0.857 0.988 0.000 0.000 0.012
#> SRR1643257     1  0.0927      0.857 0.976 0.000 0.008 0.016
#> SRR1643258     1  0.0592      0.858 0.984 0.000 0.000 0.016
#> SRR1643259     1  0.0804      0.858 0.980 0.000 0.008 0.012
#> SRR1643260     1  0.0804      0.858 0.980 0.000 0.008 0.012
#> SRR1643261     1  0.0657      0.858 0.984 0.000 0.004 0.012
#> SRR1643262     1  0.0592      0.857 0.984 0.000 0.000 0.016
#> SRR1643263     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643264     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643266     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643267     1  0.0592      0.857 0.984 0.000 0.000 0.016
#> SRR1643268     1  0.0592      0.857 0.984 0.000 0.000 0.016
#> SRR1643269     1  0.0592      0.857 0.984 0.000 0.000 0.016
#> SRR1643270     1  0.0592      0.857 0.984 0.000 0.000 0.016
#> SRR1643271     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643272     1  0.0592      0.857 0.984 0.000 0.000 0.016
#> SRR1643273     1  0.3687      0.843 0.856 0.000 0.064 0.080
#> SRR1643274     1  0.3828      0.841 0.848 0.000 0.068 0.084
#> SRR1643275     1  0.4071      0.837 0.832 0.000 0.064 0.104
#> SRR1643276     1  0.3687      0.843 0.856 0.000 0.064 0.080
#> SRR1643277     1  0.4083      0.837 0.832 0.000 0.068 0.100
#> SRR1643278     1  0.4301      0.832 0.816 0.000 0.064 0.120
#> SRR1643279     1  0.3885      0.840 0.844 0.000 0.064 0.092
#> SRR1643280     1  0.4203      0.835 0.824 0.000 0.068 0.108
#> SRR1643281     1  0.4203      0.835 0.824 0.000 0.068 0.108
#> SRR1643282     1  0.4203      0.835 0.824 0.000 0.068 0.108
#> SRR1643283     1  0.4301      0.832 0.816 0.000 0.064 0.120
#> SRR1643284     1  0.3894      0.840 0.844 0.000 0.068 0.088
#> SRR1643285     1  0.3617      0.844 0.860 0.000 0.064 0.076
#> SRR1643286     1  0.4374      0.831 0.812 0.000 0.068 0.120
#> SRR1643287     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643288     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643289     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643290     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643291     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643292     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643293     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643294     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643295     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643296     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643297     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643298     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643299     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643300     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643301     1  0.1305      0.859 0.960 0.000 0.004 0.036
#> SRR1643302     1  0.1807      0.857 0.940 0.000 0.008 0.052
#> SRR1643303     1  0.1209      0.859 0.964 0.000 0.004 0.032
#> SRR1643304     1  0.1398      0.858 0.956 0.000 0.004 0.040
#> SRR1643305     1  0.1824      0.856 0.936 0.000 0.004 0.060
#> SRR1643306     1  0.2335      0.854 0.920 0.000 0.020 0.060
#> SRR1643307     1  0.0817      0.859 0.976 0.000 0.000 0.024
#> SRR1643308     1  0.1474      0.857 0.948 0.000 0.000 0.052
#> SRR1643309     1  0.1022      0.859 0.968 0.000 0.000 0.032
#> SRR1643310     1  0.1118      0.859 0.964 0.000 0.000 0.036
#> SRR1643311     1  0.0817      0.859 0.976 0.000 0.000 0.024
#> SRR1643312     1  0.2060      0.856 0.932 0.000 0.016 0.052
#> SRR1643313     1  0.0921      0.859 0.972 0.000 0.000 0.028
#> SRR1643314     1  0.4301      0.832 0.816 0.000 0.064 0.120
#> SRR1643315     1  0.4301      0.832 0.816 0.000 0.064 0.120
#> SRR1643316     1  0.4282      0.833 0.816 0.000 0.060 0.124
#> SRR1643317     1  0.4301      0.832 0.816 0.000 0.064 0.120
#> SRR1643318     1  0.4428      0.829 0.808 0.000 0.068 0.124
#> SRR1643319     1  0.4428      0.829 0.808 0.000 0.068 0.124
#> SRR1643320     1  0.4356      0.831 0.812 0.000 0.064 0.124
#> SRR1643321     1  0.4356      0.831 0.812 0.000 0.064 0.124
#> SRR1643322     1  0.4356      0.831 0.812 0.000 0.064 0.124
#> SRR1643323     1  0.4356      0.831 0.812 0.000 0.064 0.124
#> SRR1643324     1  0.4356      0.831 0.812 0.000 0.064 0.124
#> SRR1643325     1  0.4428      0.829 0.808 0.000 0.068 0.124
#> SRR1643326     1  0.4301      0.832 0.816 0.000 0.064 0.120
#> SRR1643327     1  0.4356      0.831 0.812 0.000 0.064 0.124
#> SRR1643328     1  0.6327      0.716 0.648 0.000 0.228 0.124
#> SRR1643329     1  0.6685      0.640 0.592 0.000 0.284 0.124
#> SRR1643330     1  0.6595      0.665 0.608 0.000 0.268 0.124
#> SRR1643331     1  0.6098      0.745 0.676 0.000 0.200 0.124
#> SRR1643332     1  0.6521      0.681 0.620 0.000 0.256 0.124
#> SRR1643333     1  0.6327      0.716 0.648 0.000 0.228 0.124
#> SRR1643334     1  0.6133      0.741 0.672 0.000 0.204 0.124
#> SRR1643335     1  0.6357      0.711 0.644 0.000 0.232 0.124
#> SRR1643336     1  0.6296      0.721 0.652 0.000 0.224 0.124
#> SRR1643337     1  0.6133      0.741 0.672 0.000 0.204 0.124
#> SRR1643338     1  0.6357      0.711 0.644 0.000 0.232 0.124
#> SRR1643339     1  0.6233      0.729 0.660 0.000 0.216 0.124
#> SRR1643340     1  0.6386      0.707 0.640 0.000 0.236 0.124
#> SRR1643341     1  0.6595      0.665 0.608 0.000 0.268 0.124
#> SRR1643342     1  0.6265      0.725 0.656 0.000 0.220 0.124
#> SRR1643343     1  0.0804      0.859 0.980 0.000 0.012 0.008
#> SRR1643344     1  0.0804      0.860 0.980 0.000 0.008 0.012
#> SRR1643345     1  0.1182      0.860 0.968 0.000 0.016 0.016
#> SRR1643346     1  0.1174      0.860 0.968 0.000 0.020 0.012
#> SRR1643347     1  0.0524      0.859 0.988 0.000 0.004 0.008
#> SRR1643348     1  0.0657      0.859 0.984 0.000 0.012 0.004
#> SRR1643349     1  0.1174      0.860 0.968 0.000 0.012 0.020
#> SRR1643350     1  0.0804      0.859 0.980 0.000 0.008 0.012
#> SRR1643351     1  0.1174      0.860 0.968 0.000 0.020 0.012
#> SRR1643352     1  0.0804      0.860 0.980 0.000 0.012 0.008
#> SRR1643353     1  0.0779      0.860 0.980 0.000 0.004 0.016
#> SRR1643354     1  0.0657      0.859 0.984 0.000 0.004 0.012
#> SRR1643355     1  0.0895      0.859 0.976 0.000 0.004 0.020
#> SRR1643356     1  0.1724      0.859 0.948 0.000 0.032 0.020
#> SRR1643357     1  0.0804      0.860 0.980 0.000 0.008 0.012
#> SRR1643358     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643359     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643360     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643361     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643362     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643363     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643364     1  0.0592      0.857 0.984 0.000 0.000 0.016
#> SRR1643365     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643366     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643367     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643368     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643369     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643370     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643371     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643372     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643373     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643374     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643375     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643376     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643377     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643378     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643379     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643380     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643381     1  0.0592      0.857 0.984 0.000 0.000 0.016
#> SRR1643382     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643383     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643384     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643385     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643386     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643387     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643388     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643389     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643390     1  0.5874      0.766 0.700 0.000 0.176 0.124
#> SRR1643391     1  0.5990      0.757 0.688 0.000 0.188 0.124
#> SRR1643392     1  0.6063      0.749 0.680 0.000 0.196 0.124
#> SRR1643393     1  0.5792      0.772 0.708 0.000 0.168 0.124
#> SRR1643394     1  0.5952      0.760 0.692 0.000 0.184 0.124
#> SRR1643395     1  0.5834      0.769 0.704 0.000 0.172 0.124
#> SRR1643396     1  0.5834      0.770 0.704 0.000 0.172 0.124
#> SRR1643397     1  0.5751      0.775 0.712 0.000 0.164 0.124
#> SRR1643398     1  0.5751      0.775 0.712 0.000 0.164 0.124
#> SRR1643399     1  0.5708      0.778 0.716 0.000 0.160 0.124
#> SRR1643400     1  0.5792      0.772 0.708 0.000 0.168 0.124
#> SRR1643401     1  0.5913      0.763 0.696 0.000 0.180 0.124
#> SRR1643402     1  0.5874      0.766 0.700 0.000 0.176 0.124
#> SRR1643403     1  0.5792      0.772 0.708 0.000 0.168 0.124
#> SRR1643404     1  0.5834      0.769 0.704 0.000 0.172 0.124
#> SRR1643405     1  0.6726      0.627 0.584 0.000 0.292 0.124
#> SRR1643406     1  0.6547      0.676 0.616 0.000 0.260 0.124
#> SRR1643407     1  0.7069      0.374 0.468 0.000 0.408 0.124
#> SRR1643408     1  0.6852      0.577 0.556 0.000 0.320 0.124
#> SRR1643409     1  0.6547      0.676 0.616 0.000 0.260 0.124
#> SRR1643410     1  0.6547      0.676 0.616 0.000 0.260 0.124
#> SRR1643411     1  0.6706      0.633 0.588 0.000 0.288 0.124
#> SRR1643412     1  0.6882      0.562 0.548 0.000 0.328 0.124
#> SRR1643413     1  0.6961      0.512 0.524 0.000 0.352 0.124
#> SRR1643414     1  0.6571      0.670 0.612 0.000 0.264 0.124
#> SRR1643415     1  0.6663      0.646 0.596 0.000 0.280 0.124
#> SRR1643416     1  0.6897      0.554 0.544 0.000 0.332 0.124
#> SRR1643417     1  0.6819      0.592 0.564 0.000 0.312 0.124
#> SRR1643418     1  0.0927      0.854 0.976 0.000 0.008 0.016
#> SRR1643419     1  0.0927      0.854 0.976 0.000 0.008 0.016
#> SRR1643420     1  0.0927      0.854 0.976 0.000 0.008 0.016
#> SRR1643421     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643422     1  0.0927      0.854 0.976 0.000 0.008 0.016
#> SRR1643423     1  0.0927      0.854 0.976 0.000 0.008 0.016
#> SRR1643424     1  0.0927      0.854 0.976 0.000 0.008 0.016
#> SRR1643425     1  0.0927      0.854 0.976 0.000 0.008 0.016
#> SRR1643426     1  0.0927      0.854 0.976 0.000 0.008 0.016
#> SRR1643427     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643428     1  0.0927      0.854 0.976 0.000 0.008 0.016
#> SRR1643429     1  0.0927      0.854 0.976 0.000 0.008 0.016
#> SRR1643430     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643431     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643432     1  0.0927      0.854 0.976 0.000 0.008 0.016
#> SRR1643433     1  0.0927      0.854 0.976 0.000 0.008 0.016
#> SRR1643434     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643435     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643436     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643437     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643438     1  0.0927      0.854 0.976 0.000 0.008 0.016
#> SRR1643439     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643440     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643441     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643442     1  0.0779      0.856 0.980 0.000 0.004 0.016
#> SRR1643443     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643444     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643445     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643446     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643447     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643448     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643449     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643450     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643451     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643452     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643453     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643454     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643455     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643456     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643457     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643458     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643459     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643460     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643461     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643462     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643463     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643464     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643466     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643467     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643468     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643469     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643470     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643471     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643472     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643473     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643474     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643475     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643477     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643478     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643479     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643480     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643481     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643482     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643483     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643484     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643485     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643486     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643487     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643488     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643489     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643490     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643491     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643492     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643493     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643494     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643495     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643496     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643497     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643498     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643499     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643500     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643501     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643502     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643503     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643504     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643505     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643506     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643507     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643508     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643509     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643510     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643511     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643512     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643513     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643531     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643532     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643533     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643534     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643535     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643536     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643537     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643538     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643539     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643540     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643541     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643542     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643543     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643544     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643514     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643515     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643516     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643517     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643518     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643519     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643520     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643521     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643522     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643523     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643524     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643525     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643526     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643527     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643528     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643529     2  0.0336      0.995 0.000 0.992 0.000 0.008
#> SRR1643530     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643545     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643546     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643547     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643548     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643549     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643550     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643551     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643552     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643553     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643554     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643555     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643556     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643558     2  0.0000      0.999 0.000 1.000 0.000 0.000
#> SRR1643559     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643560     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643561     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643562     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643563     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643564     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643565     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643566     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643567     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643568     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643569     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643570     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643571     2  0.0188      0.998 0.000 0.996 0.000 0.004
#> SRR1643572     2  0.0188      0.998 0.000 0.996 0.000 0.004

show/hide code output

cbind(get_classes(res, k = 5), get_membership(res, k = 5))
#>            class entropy silhouette    p1    p2    p3    p4    p5
#> SRR1643167     1  0.2377     0.9185 0.872 0.000 0.000 0.128 0.000
#> SRR1643168     1  0.2377     0.9183 0.872 0.000 0.000 0.128 0.000
#> SRR1643169     1  0.2329     0.9170 0.876 0.000 0.000 0.124 0.000
#> SRR1643170     1  0.2377     0.9183 0.872 0.000 0.000 0.128 0.000
#> SRR1643171     1  0.2280     0.9153 0.880 0.000 0.000 0.120 0.000
#> SRR1643172     1  0.2280     0.9153 0.880 0.000 0.000 0.120 0.000
#> SRR1643173     1  0.2280     0.9153 0.880 0.000 0.000 0.120 0.000
#> SRR1643174     1  0.2230     0.9131 0.884 0.000 0.000 0.116 0.000
#> SRR1643175     1  0.2424     0.9202 0.868 0.000 0.000 0.132 0.000
#> SRR1643176     1  0.2424     0.9202 0.868 0.000 0.000 0.132 0.000
#> SRR1643177     1  0.2424     0.9202 0.868 0.000 0.000 0.132 0.000
#> SRR1643178     1  0.2424     0.9202 0.868 0.000 0.000 0.132 0.000
#> SRR1643180     1  0.2583     0.9191 0.864 0.000 0.004 0.132 0.000
#> SRR1643181     1  0.2674     0.9205 0.856 0.000 0.004 0.140 0.000
#> SRR1643182     1  0.2707     0.9188 0.860 0.000 0.008 0.132 0.000
#> SRR1643183     1  0.2179     0.9108 0.888 0.000 0.000 0.112 0.000
#> SRR1643184     1  0.2179     0.9108 0.888 0.000 0.000 0.112 0.000
#> SRR1643185     1  0.2179     0.9108 0.888 0.000 0.000 0.112 0.000
#> SRR1643186     1  0.2179     0.9108 0.888 0.000 0.000 0.112 0.000
#> SRR1643187     1  0.2020     0.9012 0.900 0.000 0.000 0.100 0.000
#> SRR1643188     1  0.1965     0.8976 0.904 0.000 0.000 0.096 0.000
#> SRR1643189     1  0.2020     0.9012 0.900 0.000 0.000 0.100 0.000
#> SRR1643190     1  0.2020     0.9012 0.900 0.000 0.000 0.100 0.000
#> SRR1643191     1  0.3692     0.8943 0.812 0.000 0.052 0.136 0.000
#> SRR1643192     1  0.3622     0.8972 0.816 0.000 0.048 0.136 0.000
#> SRR1643193     1  0.2516     0.9206 0.860 0.000 0.000 0.140 0.000
#> SRR1643194     1  0.2516     0.9206 0.860 0.000 0.000 0.140 0.000
#> SRR1643195     1  0.3707     0.8098 0.716 0.000 0.000 0.284 0.000
#> SRR1643196     1  0.3707     0.8098 0.716 0.000 0.000 0.284 0.000
#> SRR1643197     1  0.2852     0.9104 0.828 0.000 0.000 0.172 0.000
#> SRR1643198     1  0.2852     0.9104 0.828 0.000 0.000 0.172 0.000
#> SRR1643199     1  0.2389     0.9116 0.880 0.000 0.004 0.116 0.000
#> SRR1643200     1  0.2179     0.9110 0.888 0.000 0.000 0.112 0.000
#> SRR1643201     1  0.3003     0.9014 0.812 0.000 0.000 0.188 0.000
#> SRR1643202     1  0.2966     0.9039 0.816 0.000 0.000 0.184 0.000
#> SRR1643203     1  0.2074     0.9058 0.896 0.000 0.000 0.104 0.000
#> SRR1643204     1  0.2074     0.9058 0.896 0.000 0.000 0.104 0.000
#> SRR1643205     3  0.0912     0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643206     3  0.0912     0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643207     3  0.1018     0.9910 0.016 0.000 0.968 0.016 0.000
#> SRR1643208     3  0.1018     0.9910 0.016 0.000 0.968 0.016 0.000
#> SRR1643209     3  0.1281     0.9853 0.032 0.000 0.956 0.012 0.000
#> SRR1643210     3  0.1281     0.9853 0.032 0.000 0.956 0.012 0.000
#> SRR1643211     3  0.0912     0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643212     3  0.0912     0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643213     3  0.1018     0.9910 0.016 0.000 0.968 0.016 0.000
#> SRR1643214     3  0.1018     0.9910 0.016 0.000 0.968 0.016 0.000
#> SRR1643215     3  0.1195     0.9870 0.028 0.000 0.960 0.012 0.000
#> SRR1643216     3  0.1195     0.9870 0.028 0.000 0.960 0.012 0.000
#> SRR1643217     3  0.1281     0.9853 0.032 0.000 0.956 0.012 0.000
#> SRR1643218     3  0.1281     0.9853 0.032 0.000 0.956 0.012 0.000
#> SRR1643219     3  0.1106     0.9885 0.024 0.000 0.964 0.012 0.000
#> SRR1643220     3  0.1106     0.9885 0.024 0.000 0.964 0.012 0.000
#> SRR1643221     3  0.0912     0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643222     3  0.0912     0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643223     3  0.0912     0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643224     3  0.0912     0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643225     3  0.0912     0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643226     3  0.0912     0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643227     3  0.1018     0.9910 0.016 0.000 0.968 0.016 0.000
#> SRR1643228     3  0.1018     0.9910 0.016 0.000 0.968 0.016 0.000
#> SRR1643229     3  0.1281     0.9853 0.032 0.000 0.956 0.012 0.000
#> SRR1643230     3  0.0912     0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643231     3  0.0912     0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643232     3  0.1018     0.9904 0.016 0.000 0.968 0.016 0.000
#> SRR1643233     3  0.2069     0.9470 0.076 0.000 0.912 0.012 0.000
#> SRR1643234     3  0.2006     0.9514 0.072 0.000 0.916 0.012 0.000
#> SRR1643235     3  0.1018     0.9904 0.016 0.000 0.968 0.016 0.000
#> SRR1643236     3  0.0912     0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643237     3  0.0912     0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643238     3  0.0912     0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643239     3  0.0912     0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643240     3  0.0912     0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643241     3  0.0912     0.9912 0.012 0.000 0.972 0.016 0.000
#> SRR1643242     3  0.1281     0.9853 0.032 0.000 0.956 0.012 0.000
#> SRR1643243     3  0.1012     0.9895 0.020 0.000 0.968 0.012 0.000
#> SRR1643245     3  0.0912     0.9901 0.016 0.000 0.972 0.012 0.000
#> SRR1643246     3  0.1012     0.9895 0.020 0.000 0.968 0.012 0.000
#> SRR1643247     3  0.1012     0.9895 0.020 0.000 0.968 0.012 0.000
#> SRR1643248     3  0.1106     0.9890 0.024 0.000 0.964 0.012 0.000
#> SRR1643249     3  0.1809     0.9619 0.060 0.000 0.928 0.012 0.000
#> SRR1643250     4  0.1697     0.8506 0.060 0.000 0.008 0.932 0.000
#> SRR1643251     4  0.1764     0.8481 0.064 0.000 0.008 0.928 0.000
#> SRR1643252     4  0.1830     0.8451 0.068 0.000 0.008 0.924 0.000
#> SRR1643253     4  0.2230     0.8032 0.116 0.000 0.000 0.884 0.000
#> SRR1643254     4  0.2286     0.8108 0.108 0.000 0.004 0.888 0.000
#> SRR1643255     4  0.1697     0.8506 0.060 0.000 0.008 0.932 0.000
#> SRR1643256     4  0.1831     0.8400 0.076 0.000 0.004 0.920 0.000
#> SRR1643257     4  0.1697     0.8506 0.060 0.000 0.008 0.932 0.000
#> SRR1643258     4  0.2583     0.7859 0.132 0.000 0.004 0.864 0.000
#> SRR1643259     4  0.1894     0.8417 0.072 0.000 0.008 0.920 0.000
#> SRR1643260     4  0.2017     0.8351 0.080 0.000 0.008 0.912 0.000
#> SRR1643261     4  0.1830     0.8449 0.068 0.000 0.008 0.924 0.000
#> SRR1643262     4  0.0794     0.8696 0.028 0.000 0.000 0.972 0.000
#> SRR1643263     4  0.0794     0.8696 0.028 0.000 0.000 0.972 0.000
#> SRR1643264     4  0.0794     0.8696 0.028 0.000 0.000 0.972 0.000
#> SRR1643266     4  0.0794     0.8696 0.028 0.000 0.000 0.972 0.000
#> SRR1643267     4  0.0880     0.8682 0.032 0.000 0.000 0.968 0.000
#> SRR1643268     4  0.0794     0.8696 0.028 0.000 0.000 0.972 0.000
#> SRR1643269     4  0.0880     0.8682 0.032 0.000 0.000 0.968 0.000
#> SRR1643270     4  0.0794     0.8696 0.028 0.000 0.000 0.972 0.000
#> SRR1643271     4  0.0794     0.8696 0.028 0.000 0.000 0.972 0.000
#> SRR1643272     4  0.0880     0.8682 0.032 0.000 0.000 0.968 0.000
#> SRR1643273     1  0.4323     0.7045 0.656 0.000 0.000 0.332 0.012
#> SRR1643274     1  0.4270     0.7296 0.668 0.000 0.000 0.320 0.012
#> SRR1643275     1  0.4173     0.7681 0.688 0.000 0.000 0.300 0.012
#> SRR1643276     1  0.4339     0.6967 0.652 0.000 0.000 0.336 0.012
#> SRR1643277     1  0.4130     0.7823 0.696 0.000 0.000 0.292 0.012
#> SRR1643278     1  0.3992     0.8186 0.720 0.000 0.000 0.268 0.012
#> SRR1643279     1  0.4130     0.7823 0.696 0.000 0.000 0.292 0.012
#> SRR1643280     1  0.4152     0.7754 0.692 0.000 0.000 0.296 0.012
#> SRR1643281     1  0.4109     0.7885 0.700 0.000 0.000 0.288 0.012
#> SRR1643282     1  0.4086     0.7948 0.704 0.000 0.000 0.284 0.012
#> SRR1643283     1  0.4016     0.8129 0.716 0.000 0.000 0.272 0.012
#> SRR1643284     1  0.4193     0.7607 0.684 0.000 0.000 0.304 0.012
#> SRR1643285     1  0.4323     0.7045 0.656 0.000 0.000 0.332 0.012
#> SRR1643286     1  0.3967     0.8241 0.724 0.000 0.000 0.264 0.012
#> SRR1643287     4  0.1012     0.8654 0.012 0.000 0.000 0.968 0.020
#> SRR1643288     4  0.0912     0.8664 0.012 0.000 0.000 0.972 0.016
#> SRR1643289     4  0.0912     0.8664 0.012 0.000 0.000 0.972 0.016
#> SRR1643290     4  0.1012     0.8654 0.012 0.000 0.000 0.968 0.020
#> SRR1643291     4  0.1012     0.8654 0.012 0.000 0.000 0.968 0.020
#> SRR1643292     4  0.1012     0.8652 0.012 0.000 0.000 0.968 0.020
#> SRR1643293     4  0.1012     0.8654 0.012 0.000 0.000 0.968 0.020
#> SRR1643294     4  0.1012     0.8652 0.012 0.000 0.000 0.968 0.020
#> SRR1643295     4  0.1012     0.8654 0.012 0.000 0.000 0.968 0.020
#> SRR1643296     4  0.1012     0.8652 0.012 0.000 0.000 0.968 0.020
#> SRR1643297     4  0.0912     0.8664 0.012 0.000 0.000 0.972 0.016
#> SRR1643298     4  0.1012     0.8654 0.012 0.000 0.000 0.968 0.020
#> SRR1643299     4  0.0912     0.8664 0.012 0.000 0.000 0.972 0.016
#> SRR1643300     4  0.1012     0.8652 0.012 0.000 0.000 0.968 0.020
#> SRR1643301     4  0.4171     0.2587 0.396 0.000 0.000 0.604 0.000
#> SRR1643302     4  0.4227     0.1634 0.420 0.000 0.000 0.580 0.000
#> SRR1643303     4  0.3999     0.4170 0.344 0.000 0.000 0.656 0.000
#> SRR1643304     4  0.4210     0.1964 0.412 0.000 0.000 0.588 0.000
#> SRR1643305     4  0.4297    -0.0866 0.472 0.000 0.000 0.528 0.000
#> SRR1643306     4  0.4304    -0.1391 0.484 0.000 0.000 0.516 0.000
#> SRR1643307     4  0.3913     0.4723 0.324 0.000 0.000 0.676 0.000
#> SRR1643308     4  0.4256     0.0918 0.436 0.000 0.000 0.564 0.000
#> SRR1643309     4  0.4101     0.3398 0.372 0.000 0.000 0.628 0.000
#> SRR1643310     4  0.4182     0.2409 0.400 0.000 0.000 0.600 0.000
#> SRR1643311     4  0.3983     0.4325 0.340 0.000 0.000 0.660 0.000
#> SRR1643312     4  0.4256     0.0920 0.436 0.000 0.000 0.564 0.000
#> SRR1643313     4  0.4074     0.3634 0.364 0.000 0.000 0.636 0.000
#> SRR1643314     1  0.3586     0.8343 0.736 0.000 0.000 0.264 0.000
#> SRR1643315     1  0.3586     0.8343 0.736 0.000 0.000 0.264 0.000
#> SRR1643316     1  0.3561     0.8402 0.740 0.000 0.000 0.260 0.000
#> SRR1643317     1  0.3752     0.7959 0.708 0.000 0.000 0.292 0.000
#> SRR1643318     1  0.3452     0.8548 0.756 0.000 0.000 0.244 0.000
#> SRR1643319     1  0.3395     0.8625 0.764 0.000 0.000 0.236 0.000
#> SRR1643320     1  0.3480     0.8521 0.752 0.000 0.000 0.248 0.000
#> SRR1643321     1  0.3534     0.8431 0.744 0.000 0.000 0.256 0.000
#> SRR1643322     1  0.3561     0.8388 0.740 0.000 0.000 0.260 0.000
#> SRR1643323     1  0.3452     0.8544 0.756 0.000 0.000 0.244 0.000
#> SRR1643324     1  0.3561     0.8383 0.740 0.000 0.000 0.260 0.000
#> SRR1643325     1  0.3395     0.8619 0.764 0.000 0.000 0.236 0.000
#> SRR1643326     1  0.3684     0.8153 0.720 0.000 0.000 0.280 0.000
#> SRR1643327     1  0.3395     0.8625 0.764 0.000 0.000 0.236 0.000
#> SRR1643328     1  0.2806     0.9190 0.844 0.000 0.004 0.152 0.000
#> SRR1643329     1  0.2953     0.9191 0.844 0.000 0.012 0.144 0.000
#> SRR1643330     1  0.2953     0.9191 0.844 0.000 0.012 0.144 0.000
#> SRR1643331     1  0.2806     0.9190 0.844 0.000 0.004 0.152 0.000
#> SRR1643332     1  0.2886     0.9193 0.844 0.000 0.008 0.148 0.000
#> SRR1643333     1  0.2806     0.9190 0.844 0.000 0.004 0.152 0.000
#> SRR1643334     1  0.2763     0.9198 0.848 0.000 0.004 0.148 0.000
#> SRR1643335     1  0.2806     0.9190 0.844 0.000 0.004 0.152 0.000
#> SRR1643336     1  0.2806     0.9190 0.844 0.000 0.004 0.152 0.000
#> SRR1643337     1  0.2806     0.9193 0.844 0.000 0.004 0.152 0.000
#> SRR1643338     1  0.2763     0.9198 0.848 0.000 0.004 0.148 0.000
#> SRR1643339     1  0.2806     0.9190 0.844 0.000 0.004 0.152 0.000
#> SRR1643340     1  0.2909     0.9198 0.848 0.000 0.012 0.140 0.000
#> SRR1643341     1  0.3055     0.9181 0.840 0.000 0.016 0.144 0.000
#> SRR1643342     1  0.2806     0.9190 0.844 0.000 0.004 0.152 0.000
#> SRR1643343     4  0.4309     0.5059 0.308 0.000 0.000 0.676 0.016
#> SRR1643344     4  0.4482     0.4088 0.348 0.000 0.000 0.636 0.016
#> SRR1643345     4  0.4384     0.4721 0.324 0.000 0.000 0.660 0.016
#> SRR1643346     4  0.4620     0.2706 0.392 0.000 0.000 0.592 0.016
#> SRR1643347     4  0.4114     0.5790 0.272 0.000 0.000 0.712 0.016
#> SRR1643348     4  0.4138     0.5718 0.276 0.000 0.000 0.708 0.016
#> SRR1643349     4  0.4610     0.2816 0.388 0.000 0.000 0.596 0.016
#> SRR1643350     4  0.4525     0.3693 0.360 0.000 0.000 0.624 0.016
#> SRR1643351     4  0.4564     0.3353 0.372 0.000 0.000 0.612 0.016
#> SRR1643352     4  0.4467     0.4194 0.344 0.000 0.000 0.640 0.016
#> SRR1643353     4  0.4451     0.4300 0.340 0.000 0.000 0.644 0.016
#> SRR1643354     4  0.4206     0.5456 0.288 0.000 0.000 0.696 0.016
#> SRR1643355     4  0.4674     0.1742 0.416 0.000 0.000 0.568 0.016
#> SRR1643356     4  0.4329     0.5004 0.312 0.000 0.000 0.672 0.016
#> SRR1643357     4  0.4418     0.4517 0.332 0.000 0.000 0.652 0.016
#> SRR1643358     4  0.0703     0.8706 0.024 0.000 0.000 0.976 0.000
#> SRR1643359     4  0.0703     0.8706 0.024 0.000 0.000 0.976 0.000
#> SRR1643360     4  0.0609     0.8712 0.020 0.000 0.000 0.980 0.000
#> SRR1643361     4  0.0703     0.8706 0.024 0.000 0.000 0.976 0.000
#> SRR1643362     4  0.0609     0.8712 0.020 0.000 0.000 0.980 0.000
#> SRR1643363     4  0.0609     0.8712 0.020 0.000 0.000 0.980 0.000
#> SRR1643364     4  0.0703     0.8706 0.024 0.000 0.000 0.976 0.000
#> SRR1643365     4  0.0703     0.8706 0.024 0.000 0.000 0.976 0.000
#> SRR1643366     4  0.0609     0.8712 0.020 0.000 0.000 0.980 0.000
#> SRR1643367     4  0.0609     0.8712 0.020 0.000 0.000 0.980 0.000
#> SRR1643368     4  0.0703     0.8706 0.024 0.000 0.000 0.976 0.000
#> SRR1643369     4  0.0609     0.8712 0.020 0.000 0.000 0.980 0.000
#> SRR1643370     4  0.0865     0.8709 0.024 0.000 0.000 0.972 0.004
#> SRR1643371     4  0.0609     0.8712 0.020 0.000 0.000 0.980 0.000
#> SRR1643372     4  0.0609     0.8712 0.020 0.000 0.000 0.980 0.000
#> SRR1643373     4  0.0898     0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643374     4  0.0898     0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643375     4  0.0898     0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643376     4  0.0798     0.8704 0.016 0.000 0.000 0.976 0.008
#> SRR1643377     4  0.0898     0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643378     4  0.0898     0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643379     4  0.0898     0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643380     4  0.0771     0.8711 0.020 0.000 0.000 0.976 0.004
#> SRR1643381     4  0.0771     0.8711 0.020 0.000 0.000 0.976 0.004
#> SRR1643382     4  0.0898     0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643383     4  0.0898     0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643384     4  0.0898     0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643385     4  0.0771     0.8711 0.020 0.000 0.000 0.976 0.004
#> SRR1643386     4  0.0898     0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643387     4  0.0898     0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643388     4  0.0898     0.8712 0.020 0.000 0.000 0.972 0.008
#> SRR1643389     4  0.0798     0.8704 0.016 0.000 0.000 0.976 0.008
#> SRR1643390     1  0.2424     0.9204 0.868 0.000 0.000 0.132 0.000
#> SRR1643391     1  0.2605     0.9200 0.852 0.000 0.000 0.148 0.000
#> SRR1643392     1  0.2561     0.9208 0.856 0.000 0.000 0.144 0.000
#> SRR1643393     1  0.2561     0.9204 0.856 0.000 0.000 0.144 0.000
#> SRR1643394     1  0.2516     0.9209 0.860 0.000 0.000 0.140 0.000
#> SRR1643395     1  0.2605     0.9203 0.852 0.000 0.000 0.148 0.000
#> SRR1643396     1  0.2127     0.9098 0.892 0.000 0.000 0.108 0.000
#> SRR1643397     1  0.2561     0.9202 0.856 0.000 0.000 0.144 0.000
#> SRR1643398     1  0.2516     0.9206 0.860 0.000 0.000 0.140 0.000
#> SRR1643399     1  0.2516     0.9209 0.860 0.000 0.000 0.140 0.000
#> SRR1643400     1  0.2424     0.9204 0.868 0.000 0.000 0.132 0.000
#> SRR1643401     1  0.2561     0.9206 0.856 0.000 0.000 0.144 0.000
#> SRR1643402     1  0.2329     0.9176 0.876 0.000 0.000 0.124 0.000
#> SRR1643403     1  0.2605     0.9200 0.852 0.000 0.000 0.148 0.000
#> SRR1643404     1  0.2629     0.9205 0.860 0.000 0.000 0.136 0.004
#> SRR1643405     1  0.2914     0.8970 0.872 0.000 0.012 0.100 0.016
#> SRR1643406     1  0.2748     0.8965 0.880 0.000 0.008 0.096 0.016
#> SRR1643407     1  0.2830     0.8780 0.884 0.000 0.020 0.080 0.016
#> SRR1643408     1  0.2967     0.8999 0.868 0.000 0.012 0.104 0.016
#> SRR1643409     1  0.2623     0.8991 0.884 0.000 0.004 0.096 0.016
#> SRR1643410     1  0.2519     0.9021 0.884 0.000 0.000 0.100 0.016
#> SRR1643411     1  0.2692     0.8945 0.884 0.000 0.008 0.092 0.016
#> SRR1643412     1  0.2635     0.8920 0.888 0.000 0.008 0.088 0.016
#> SRR1643413     1  0.2747     0.8886 0.884 0.000 0.012 0.088 0.016
#> SRR1643414     1  0.2568     0.8957 0.888 0.000 0.004 0.092 0.016
#> SRR1643415     1  0.2962     0.8934 0.872 0.000 0.016 0.096 0.016
#> SRR1643416     1  0.2623     0.8979 0.884 0.000 0.004 0.096 0.016
#> SRR1643417     1  0.2635     0.8895 0.888 0.000 0.008 0.088 0.016
#> SRR1643418     4  0.0324     0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643419     4  0.0324     0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643420     4  0.0324     0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643421     4  0.0486     0.8673 0.004 0.000 0.004 0.988 0.004
#> SRR1643422     4  0.0324     0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643423     4  0.0324     0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643424     4  0.0324     0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643425     4  0.0324     0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643426     4  0.0324     0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643427     4  0.0324     0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643428     4  0.0324     0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643429     4  0.0324     0.8654 0.000 0.000 0.004 0.992 0.004
#> SRR1643430     4  0.0451     0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643431     4  0.0451     0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643432     4  0.0451     0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643433     4  0.0451     0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643434     4  0.0451     0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643435     4  0.0451     0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643436     4  0.0451     0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643437     4  0.0451     0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643438     4  0.0451     0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643439     4  0.0451     0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643440     4  0.0451     0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643441     4  0.0451     0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643442     4  0.0451     0.8639 0.000 0.000 0.004 0.988 0.008
#> SRR1643443     2  0.1121     0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643444     2  0.1121     0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643445     2  0.1121     0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643446     2  0.1121     0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643447     2  0.1341     0.9683 0.000 0.944 0.000 0.000 0.056
#> SRR1643448     2  0.1341     0.9683 0.000 0.944 0.000 0.000 0.056
#> SRR1643449     2  0.1197     0.9706 0.000 0.952 0.000 0.000 0.048
#> SRR1643450     2  0.1121     0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643451     2  0.1121     0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643452     2  0.1121     0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643453     2  0.1121     0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643454     2  0.1270     0.9696 0.000 0.948 0.000 0.000 0.052
#> SRR1643455     2  0.1197     0.9706 0.000 0.952 0.000 0.000 0.048
#> SRR1643456     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643457     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643458     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643459     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643460     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643461     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643462     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643463     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643464     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643466     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643467     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643468     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643469     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643470     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643471     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643472     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643473     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643474     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643475     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643477     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643478     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643479     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643480     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643481     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643482     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643483     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643484     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643485     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643486     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643487     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643488     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643489     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643490     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643491     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643492     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643493     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643494     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643495     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643496     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643497     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643498     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643499     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643500     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643501     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643502     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643503     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643504     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643505     2  0.0404     0.9743 0.000 0.988 0.000 0.000 0.012
#> SRR1643506     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643507     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643508     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643509     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643510     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643511     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643512     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643513     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643531     2  0.1121     0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643532     2  0.0963     0.9729 0.000 0.964 0.000 0.000 0.036
#> SRR1643533     2  0.0963     0.9729 0.000 0.964 0.000 0.000 0.036
#> SRR1643534     2  0.1121     0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643535     2  0.1121     0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643536     2  0.1270     0.9695 0.000 0.948 0.000 0.000 0.052
#> SRR1643537     2  0.1121     0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643538     2  0.1121     0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643539     2  0.1121     0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643540     2  0.1121     0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643541     2  0.1043     0.9722 0.000 0.960 0.000 0.000 0.040
#> SRR1643542     2  0.1197     0.9706 0.000 0.952 0.000 0.000 0.048
#> SRR1643543     2  0.1121     0.9717 0.000 0.956 0.000 0.000 0.044
#> SRR1643544     2  0.1270     0.9695 0.000 0.948 0.000 0.000 0.052
#> SRR1643514     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643515     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643516     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643517     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643518     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643519     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643520     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643521     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643522     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643523     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643524     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643525     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643526     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643527     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643528     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643529     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643530     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643545     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643546     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643547     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643548     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643549     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643550     2  0.0510     0.9732 0.000 0.984 0.000 0.000 0.016
#> SRR1643551     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643552     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643553     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643554     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643555     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643556     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643558     2  0.0000     0.9767 0.000 1.000 0.000 0.000 0.000
#> SRR1643559     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643560     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643561     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643562     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643563     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643564     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643565     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643566     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643567     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643568     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643569     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643570     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643571     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076
#> SRR1643572     2  0.1671     0.9614 0.000 0.924 0.000 0.000 0.076

show/hide code output

cbind(get_classes(res, k = 6), get_membership(res, k = 6))
#>            class entropy silhouette    p1    p2    p3    p4    p5    p6
#> SRR1643167     1  0.1801    0.71445 0.924 0.000 0.004 0.056 0.000 0.016
#> SRR1643168     1  0.1719    0.71672 0.924 0.000 0.000 0.060 0.000 0.016
#> SRR1643169     1  0.1719    0.71672 0.924 0.000 0.000 0.060 0.000 0.016
#> SRR1643170     1  0.1719    0.71672 0.924 0.000 0.000 0.060 0.000 0.016
#> SRR1643171     1  0.1707    0.71720 0.928 0.000 0.004 0.056 0.000 0.012
#> SRR1643172     1  0.1719    0.71771 0.924 0.000 0.000 0.060 0.000 0.016
#> SRR1643173     1  0.1707    0.71720 0.928 0.000 0.004 0.056 0.000 0.012
#> SRR1643174     1  0.1625    0.71884 0.928 0.000 0.000 0.060 0.000 0.012
#> SRR1643175     1  0.3409    0.65796 0.808 0.000 0.004 0.044 0.000 0.144
#> SRR1643176     1  0.3409    0.65898 0.808 0.000 0.004 0.044 0.000 0.144
#> SRR1643177     1  0.3521    0.64660 0.796 0.000 0.004 0.044 0.000 0.156
#> SRR1643178     1  0.3447    0.65512 0.804 0.000 0.004 0.044 0.000 0.148
#> SRR1643180     1  0.2437    0.70072 0.888 0.000 0.004 0.072 0.000 0.036
#> SRR1643181     1  0.2380    0.70242 0.892 0.000 0.004 0.068 0.000 0.036
#> SRR1643182     1  0.2350    0.70323 0.888 0.000 0.000 0.076 0.000 0.036
#> SRR1643183     1  0.1889    0.70918 0.920 0.000 0.004 0.056 0.000 0.020
#> SRR1643184     1  0.1972    0.70655 0.916 0.000 0.004 0.056 0.000 0.024
#> SRR1643185     1  0.1972    0.70655 0.916 0.000 0.004 0.056 0.000 0.024
#> SRR1643186     1  0.1972    0.70655 0.916 0.000 0.004 0.056 0.000 0.024
#> SRR1643187     1  0.2488    0.69688 0.880 0.000 0.000 0.044 0.000 0.076
#> SRR1643188     1  0.2488    0.69688 0.880 0.000 0.000 0.044 0.000 0.076
#> SRR1643189     1  0.2488    0.69688 0.880 0.000 0.000 0.044 0.000 0.076
#> SRR1643190     1  0.2488    0.69688 0.880 0.000 0.000 0.044 0.000 0.076
#> SRR1643191     1  0.3317    0.69427 0.836 0.000 0.036 0.104 0.000 0.024
#> SRR1643192     1  0.3282    0.70019 0.836 0.000 0.036 0.108 0.000 0.020
#> SRR1643193     1  0.1701    0.72106 0.920 0.000 0.000 0.072 0.000 0.008
#> SRR1643194     1  0.1745    0.72019 0.920 0.000 0.000 0.068 0.000 0.012
#> SRR1643195     1  0.4088    0.58793 0.716 0.000 0.004 0.240 0.000 0.040
#> SRR1643196     1  0.4088    0.58793 0.716 0.000 0.004 0.240 0.000 0.040
#> SRR1643197     1  0.2331    0.73100 0.888 0.000 0.000 0.080 0.000 0.032
#> SRR1643198     1  0.2436    0.72986 0.880 0.000 0.000 0.088 0.000 0.032
#> SRR1643199     1  0.1826    0.71236 0.924 0.000 0.004 0.052 0.000 0.020
#> SRR1643200     1  0.1738    0.71419 0.928 0.000 0.004 0.052 0.000 0.016
#> SRR1643201     1  0.2680    0.69485 0.860 0.000 0.000 0.108 0.000 0.032
#> SRR1643202     1  0.2680    0.69485 0.860 0.000 0.000 0.108 0.000 0.032
#> SRR1643203     1  0.1723    0.71080 0.928 0.000 0.000 0.036 0.000 0.036
#> SRR1643204     1  0.1723    0.71080 0.928 0.000 0.000 0.036 0.000 0.036
#> SRR1643205     3  0.0603    0.98256 0.016 0.000 0.980 0.004 0.000 0.000
#> SRR1643206     3  0.0603    0.98256 0.016 0.000 0.980 0.004 0.000 0.000
#> SRR1643207     3  0.0508    0.98288 0.012 0.000 0.984 0.004 0.000 0.000
#> SRR1643208     3  0.0508    0.98288 0.012 0.000 0.984 0.004 0.000 0.000
#> SRR1643209     3  0.0909    0.98000 0.020 0.000 0.968 0.000 0.000 0.012
#> SRR1643210     3  0.0820    0.98045 0.016 0.000 0.972 0.000 0.000 0.012
#> SRR1643211     3  0.0653    0.98308 0.012 0.000 0.980 0.004 0.000 0.004
#> SRR1643212     3  0.0551    0.98308 0.008 0.000 0.984 0.004 0.000 0.004
#> SRR1643213     3  0.0603    0.98254 0.016 0.000 0.980 0.000 0.000 0.004
#> SRR1643214     3  0.0508    0.98276 0.012 0.000 0.984 0.000 0.000 0.004
#> SRR1643215     3  0.0993    0.97703 0.012 0.000 0.964 0.000 0.000 0.024
#> SRR1643216     3  0.0993    0.97703 0.012 0.000 0.964 0.000 0.000 0.024
#> SRR1643217     3  0.1074    0.97433 0.012 0.000 0.960 0.000 0.000 0.028
#> SRR1643218     3  0.1088    0.97405 0.016 0.000 0.960 0.000 0.000 0.024
#> SRR1643219     3  0.0806    0.98037 0.008 0.000 0.972 0.000 0.000 0.020
#> SRR1643220     3  0.0806    0.98037 0.008 0.000 0.972 0.000 0.000 0.020
#> SRR1643221     3  0.0508    0.98270 0.012 0.000 0.984 0.004 0.000 0.000
#> SRR1643222     3  0.0405    0.98091 0.008 0.000 0.988 0.004 0.000 0.000
#> SRR1643223     3  0.0405    0.98091 0.008 0.000 0.988 0.004 0.000 0.000
#> SRR1643224     3  0.0405    0.98091 0.008 0.000 0.988 0.004 0.000 0.000
#> SRR1643225     3  0.0508    0.98270 0.012 0.000 0.984 0.004 0.000 0.000
#> SRR1643226     3  0.0508    0.98270 0.012 0.000 0.984 0.004 0.000 0.000
#> SRR1643227     3  0.0603    0.98239 0.016 0.000 0.980 0.000 0.000 0.004
#> SRR1643228     3  0.0603    0.98239 0.016 0.000 0.980 0.000 0.000 0.004
#> SRR1643229     3  0.0603    0.98254 0.016 0.000 0.980 0.000 0.000 0.004
#> SRR1643230     3  0.0458    0.98281 0.016 0.000 0.984 0.000 0.000 0.000
#> SRR1643231     3  0.0405    0.98328 0.008 0.000 0.988 0.000 0.000 0.004
#> SRR1643232     3  0.0405    0.98091 0.008 0.000 0.988 0.004 0.000 0.000
#> SRR1643233     3  0.1807    0.94688 0.060 0.000 0.920 0.000 0.000 0.020
#> SRR1643234     3  0.1807    0.94688 0.060 0.000 0.920 0.000 0.000 0.020
#> SRR1643235     3  0.0405    0.98091 0.008 0.000 0.988 0.004 0.000 0.000
#> SRR1643236     3  0.0767    0.98167 0.012 0.000 0.976 0.004 0.000 0.008
#> SRR1643237     3  0.0767    0.98167 0.012 0.000 0.976 0.004 0.000 0.008
#> SRR1643238     3  0.0260    0.98159 0.008 0.000 0.992 0.000 0.000 0.000
#> SRR1643239     3  0.0260    0.98159 0.008 0.000 0.992 0.000 0.000 0.000
#> SRR1643240     3  0.0260    0.98159 0.008 0.000 0.992 0.000 0.000 0.000
#> SRR1643241     3  0.0260    0.98159 0.008 0.000 0.992 0.000 0.000 0.000
#> SRR1643242     3  0.1562    0.96836 0.032 0.000 0.940 0.004 0.000 0.024
#> SRR1643243     3  0.1053    0.97802 0.012 0.000 0.964 0.000 0.004 0.020
#> SRR1643245     3  0.0964    0.97935 0.012 0.000 0.968 0.000 0.004 0.016
#> SRR1643246     3  0.0964    0.97935 0.012 0.000 0.968 0.000 0.004 0.016
#> SRR1643247     3  0.0964    0.97935 0.012 0.000 0.968 0.000 0.004 0.016
#> SRR1643248     3  0.0717    0.98194 0.016 0.000 0.976 0.000 0.000 0.008
#> SRR1643249     3  0.3589    0.82719 0.148 0.000 0.800 0.012 0.000 0.040
#> SRR1643250     4  0.2572    0.80540 0.136 0.000 0.000 0.852 0.000 0.012
#> SRR1643251     4  0.2783    0.78939 0.148 0.000 0.000 0.836 0.000 0.016
#> SRR1643252     4  0.3073    0.76810 0.164 0.000 0.004 0.816 0.000 0.016
#> SRR1643253     4  0.2841    0.77526 0.164 0.000 0.000 0.824 0.000 0.012
#> SRR1643254     4  0.3361    0.73486 0.188 0.000 0.004 0.788 0.000 0.020
#> SRR1643255     4  0.2783    0.78928 0.148 0.000 0.000 0.836 0.000 0.016
#> SRR1643256     4  0.2805    0.77991 0.160 0.000 0.000 0.828 0.000 0.012
#> SRR1643257     4  0.2859    0.78081 0.156 0.000 0.000 0.828 0.000 0.016
#> SRR1643258     4  0.3329    0.73604 0.184 0.000 0.004 0.792 0.000 0.020
#> SRR1643259     4  0.3037    0.77386 0.160 0.000 0.004 0.820 0.000 0.016
#> SRR1643260     4  0.2821    0.78595 0.152 0.000 0.000 0.832 0.000 0.016
#> SRR1643261     4  0.3122    0.76934 0.160 0.000 0.004 0.816 0.000 0.020
#> SRR1643262     4  0.2625    0.82885 0.056 0.000 0.000 0.872 0.000 0.072
#> SRR1643263     4  0.2554    0.82749 0.048 0.000 0.000 0.876 0.000 0.076
#> SRR1643264     4  0.2365    0.83887 0.040 0.000 0.000 0.888 0.000 0.072
#> SRR1643266     4  0.2506    0.83536 0.052 0.000 0.000 0.880 0.000 0.068
#> SRR1643267     4  0.2618    0.82857 0.052 0.000 0.000 0.872 0.000 0.076
#> SRR1643268     4  0.2786    0.81606 0.056 0.000 0.000 0.860 0.000 0.084
#> SRR1643269     4  0.2433    0.83846 0.044 0.000 0.000 0.884 0.000 0.072
#> SRR1643270     4  0.2680    0.82281 0.056 0.000 0.000 0.868 0.000 0.076
#> SRR1643271     4  0.2420    0.83817 0.040 0.000 0.000 0.884 0.000 0.076
#> SRR1643272     4  0.2618    0.82961 0.052 0.000 0.000 0.872 0.000 0.076
#> SRR1643273     6  0.5816    0.63050 0.304 0.000 0.012 0.156 0.000 0.528
#> SRR1643274     6  0.5789    0.61849 0.316 0.000 0.008 0.160 0.000 0.516
#> SRR1643275     6  0.5704    0.57844 0.344 0.000 0.004 0.152 0.000 0.500
#> SRR1643276     6  0.5689    0.61917 0.316 0.000 0.004 0.160 0.000 0.520
#> SRR1643277     6  0.5729    0.61042 0.324 0.000 0.008 0.148 0.000 0.520
#> SRR1643278     6  0.5609    0.56281 0.352 0.000 0.004 0.136 0.000 0.508
#> SRR1643279     6  0.5677    0.58966 0.344 0.000 0.004 0.148 0.000 0.504
#> SRR1643280     6  0.5611    0.60612 0.328 0.000 0.004 0.144 0.000 0.524
#> SRR1643281     6  0.5660    0.59359 0.336 0.000 0.004 0.148 0.000 0.512
#> SRR1643282     6  0.5712    0.60525 0.328 0.000 0.008 0.144 0.000 0.520
#> SRR1643283     6  0.5601    0.58037 0.348 0.000 0.004 0.136 0.000 0.512
#> SRR1643284     6  0.5760    0.60806 0.324 0.000 0.012 0.140 0.000 0.524
#> SRR1643285     6  0.5840    0.62338 0.312 0.000 0.012 0.156 0.000 0.520
#> SRR1643286     6  0.5670    0.58254 0.348 0.000 0.008 0.132 0.000 0.512
#> SRR1643287     6  0.4631    0.46417 0.032 0.000 0.004 0.428 0.000 0.536
#> SRR1643288     6  0.4640    0.45234 0.032 0.000 0.004 0.436 0.000 0.528
#> SRR1643289     6  0.4631    0.46417 0.032 0.000 0.004 0.428 0.000 0.536
#> SRR1643290     6  0.4631    0.46417 0.032 0.000 0.004 0.428 0.000 0.536
#> SRR1643291     6  0.4631    0.46417 0.032 0.000 0.004 0.428 0.000 0.536
#> SRR1643292     6  0.4631    0.46417 0.032 0.000 0.004 0.428 0.000 0.536
#> SRR1643293     6  0.4676    0.48336 0.036 0.000 0.004 0.416 0.000 0.544
#> SRR1643294     6  0.4644    0.44208 0.032 0.000 0.004 0.440 0.000 0.524
#> SRR1643295     6  0.4636    0.45684 0.032 0.000 0.004 0.432 0.000 0.532
#> SRR1643296     6  0.4631    0.46417 0.032 0.000 0.004 0.428 0.000 0.536
#> SRR1643297     6  0.4636    0.45995 0.032 0.000 0.004 0.432 0.000 0.532
#> SRR1643298     6  0.4687    0.47271 0.036 0.000 0.004 0.424 0.000 0.536
#> SRR1643299     6  0.4636    0.45478 0.032 0.000 0.004 0.432 0.000 0.532
#> SRR1643300     6  0.4631    0.46417 0.032 0.000 0.004 0.428 0.000 0.536
#> SRR1643301     4  0.5521   -0.10206 0.400 0.000 0.000 0.468 0.000 0.132
#> SRR1643302     1  0.5292    0.20100 0.468 0.000 0.000 0.432 0.000 0.100
#> SRR1643303     4  0.5220    0.10983 0.372 0.000 0.000 0.528 0.000 0.100
#> SRR1643304     1  0.5329    0.16314 0.452 0.000 0.000 0.444 0.000 0.104
#> SRR1643305     1  0.4971    0.26614 0.508 0.000 0.000 0.424 0.000 0.068
#> SRR1643306     1  0.5112    0.30473 0.536 0.000 0.000 0.376 0.000 0.088
#> SRR1643307     4  0.5030    0.28620 0.316 0.000 0.000 0.588 0.000 0.096
#> SRR1643308     1  0.5025    0.23377 0.492 0.000 0.000 0.436 0.000 0.072
#> SRR1643309     4  0.5196   -0.00194 0.404 0.000 0.000 0.504 0.000 0.092
#> SRR1643310     4  0.4808   -0.16892 0.472 0.000 0.000 0.476 0.000 0.052
#> SRR1643311     4  0.5098    0.21862 0.352 0.000 0.000 0.556 0.000 0.092
#> SRR1643312     1  0.5257    0.20085 0.472 0.000 0.000 0.432 0.000 0.096
#> SRR1643313     4  0.5093    0.09572 0.388 0.000 0.000 0.528 0.000 0.084
#> SRR1643314     1  0.4252    0.65443 0.728 0.000 0.000 0.176 0.000 0.096
#> SRR1643315     1  0.4689    0.62469 0.700 0.000 0.008 0.184 0.000 0.108
#> SRR1643316     1  0.4111    0.66268 0.740 0.000 0.000 0.176 0.000 0.084
#> SRR1643317     1  0.4875    0.58513 0.668 0.000 0.008 0.224 0.000 0.100
#> SRR1643318     1  0.4351    0.65145 0.720 0.000 0.000 0.172 0.000 0.108
#> SRR1643319     1  0.4148    0.67686 0.744 0.000 0.000 0.148 0.000 0.108
#> SRR1643320     1  0.4340    0.65925 0.720 0.000 0.000 0.176 0.000 0.104
#> SRR1643321     1  0.4506    0.63459 0.704 0.000 0.000 0.176 0.000 0.120
#> SRR1643322     1  0.4074    0.67346 0.748 0.000 0.000 0.160 0.000 0.092
#> SRR1643323     1  0.4199    0.66337 0.736 0.000 0.000 0.164 0.000 0.100
#> SRR1643324     1  0.4206    0.65489 0.732 0.000 0.000 0.176 0.000 0.092
#> SRR1643325     1  0.4267    0.65962 0.732 0.000 0.000 0.152 0.000 0.116
#> SRR1643326     1  0.4687    0.61094 0.684 0.000 0.000 0.180 0.000 0.136
#> SRR1643327     1  0.4120    0.67586 0.744 0.000 0.000 0.160 0.000 0.096
#> SRR1643328     1  0.3856    0.70085 0.788 0.000 0.012 0.068 0.000 0.132
#> SRR1643329     1  0.3488    0.71573 0.820 0.000 0.012 0.060 0.000 0.108
#> SRR1643330     1  0.3725    0.69913 0.796 0.000 0.012 0.056 0.000 0.136
#> SRR1643331     1  0.3330    0.71738 0.828 0.000 0.008 0.056 0.000 0.108
#> SRR1643332     1  0.3971    0.68099 0.772 0.000 0.012 0.060 0.000 0.156
#> SRR1643333     1  0.3314    0.71583 0.828 0.000 0.008 0.052 0.000 0.112
#> SRR1643334     1  0.3176    0.71918 0.840 0.000 0.008 0.052 0.000 0.100
#> SRR1643335     1  0.3561    0.70942 0.812 0.000 0.012 0.056 0.000 0.120
#> SRR1643336     1  0.3725    0.69917 0.796 0.000 0.012 0.056 0.000 0.136
#> SRR1643337     1  0.3703    0.70179 0.796 0.000 0.008 0.064 0.000 0.132
#> SRR1643338     1  0.3395    0.71180 0.824 0.000 0.012 0.048 0.000 0.116
#> SRR1643339     1  0.3685    0.70191 0.800 0.000 0.012 0.056 0.000 0.132
#> SRR1643340     1  0.3160    0.71835 0.840 0.000 0.008 0.048 0.000 0.104
#> SRR1643341     1  0.3822    0.69902 0.788 0.000 0.012 0.060 0.000 0.140
#> SRR1643342     1  0.3561    0.70932 0.812 0.000 0.012 0.056 0.000 0.120
#> SRR1643343     6  0.5581    0.69492 0.188 0.000 0.012 0.204 0.000 0.596
#> SRR1643344     6  0.5558    0.69585 0.192 0.000 0.012 0.196 0.000 0.600
#> SRR1643345     6  0.5583    0.69583 0.192 0.000 0.012 0.200 0.000 0.596
#> SRR1643346     6  0.5555    0.69334 0.204 0.000 0.012 0.184 0.000 0.600
#> SRR1643347     6  0.5607    0.69518 0.192 0.000 0.012 0.204 0.000 0.592
#> SRR1643348     6  0.5549    0.69050 0.176 0.000 0.012 0.212 0.000 0.600
#> SRR1643349     6  0.5605    0.69136 0.208 0.000 0.012 0.188 0.000 0.592
#> SRR1643350     6  0.5630    0.69339 0.192 0.000 0.012 0.208 0.000 0.588
#> SRR1643351     6  0.5607    0.69437 0.196 0.000 0.012 0.200 0.000 0.592
#> SRR1643352     6  0.5583    0.69587 0.196 0.000 0.012 0.196 0.000 0.596
#> SRR1643353     6  0.5607    0.69387 0.200 0.000 0.012 0.196 0.000 0.592
#> SRR1643354     6  0.5602    0.69315 0.184 0.000 0.012 0.212 0.000 0.592
#> SRR1643355     6  0.5605    0.69136 0.208 0.000 0.012 0.188 0.000 0.592
#> SRR1643356     6  0.5532    0.69644 0.188 0.000 0.012 0.196 0.000 0.604
#> SRR1643357     6  0.5531    0.69431 0.184 0.000 0.012 0.200 0.000 0.604
#> SRR1643358     4  0.1531    0.86113 0.068 0.000 0.000 0.928 0.000 0.004
#> SRR1643359     4  0.1411    0.86573 0.060 0.000 0.004 0.936 0.000 0.000
#> SRR1643360     4  0.1429    0.86679 0.052 0.000 0.004 0.940 0.000 0.004
#> SRR1643361     4  0.1531    0.86118 0.068 0.000 0.000 0.928 0.000 0.004
#> SRR1643362     4  0.1285    0.86664 0.052 0.000 0.004 0.944 0.000 0.000
#> SRR1643363     4  0.1327    0.86466 0.064 0.000 0.000 0.936 0.000 0.000
#> SRR1643364     4  0.1524    0.86350 0.060 0.000 0.000 0.932 0.000 0.008
#> SRR1643365     4  0.1701    0.85947 0.072 0.000 0.000 0.920 0.000 0.008
#> SRR1643366     4  0.1411    0.86428 0.060 0.000 0.000 0.936 0.000 0.004
#> SRR1643367     4  0.1267    0.86508 0.060 0.000 0.000 0.940 0.000 0.000
#> SRR1643368     4  0.1644    0.85741 0.076 0.000 0.000 0.920 0.000 0.004
#> SRR1643369     4  0.1411    0.86509 0.060 0.000 0.000 0.936 0.000 0.004
#> SRR1643370     4  0.1643    0.85990 0.068 0.000 0.000 0.924 0.000 0.008
#> SRR1643371     4  0.1349    0.86567 0.056 0.000 0.000 0.940 0.000 0.004
#> SRR1643372     4  0.1643    0.86196 0.068 0.000 0.000 0.924 0.000 0.008
#> SRR1643373     4  0.1500    0.85657 0.012 0.000 0.000 0.936 0.000 0.052
#> SRR1643374     4  0.1434    0.85962 0.012 0.000 0.000 0.940 0.000 0.048
#> SRR1643375     4  0.1511    0.86098 0.012 0.000 0.004 0.940 0.000 0.044
#> SRR1643376     4  0.1578    0.85968 0.012 0.000 0.004 0.936 0.000 0.048
#> SRR1643377     4  0.1890    0.84813 0.024 0.000 0.000 0.916 0.000 0.060
#> SRR1643378     4  0.1625    0.85458 0.012 0.000 0.000 0.928 0.000 0.060
#> SRR1643379     4  0.1682    0.85380 0.020 0.000 0.000 0.928 0.000 0.052
#> SRR1643380     4  0.1434    0.85813 0.012 0.000 0.000 0.940 0.000 0.048
#> SRR1643381     4  0.1789    0.86179 0.032 0.000 0.000 0.924 0.000 0.044
#> SRR1643382     4  0.1700    0.85845 0.024 0.000 0.000 0.928 0.000 0.048
#> SRR1643383     4  0.1528    0.85816 0.016 0.000 0.000 0.936 0.000 0.048
#> SRR1643384     4  0.1370    0.86152 0.012 0.000 0.004 0.948 0.000 0.036
#> SRR1643385     4  0.1528    0.85991 0.016 0.000 0.000 0.936 0.000 0.048
#> SRR1643386     4  0.1500    0.85836 0.012 0.000 0.000 0.936 0.000 0.052
#> SRR1643387     4  0.1719    0.85387 0.016 0.000 0.000 0.924 0.000 0.060
#> SRR1643388     4  0.1624    0.86301 0.020 0.000 0.004 0.936 0.000 0.040
#> SRR1643389     4  0.1578    0.85968 0.012 0.000 0.004 0.936 0.000 0.048
#> SRR1643390     1  0.4997    0.45325 0.632 0.000 0.012 0.076 0.000 0.280
#> SRR1643391     1  0.4874    0.45565 0.636 0.000 0.008 0.072 0.000 0.284
#> SRR1643392     1  0.5113    0.39091 0.604 0.000 0.012 0.076 0.000 0.308
#> SRR1643393     1  0.4838    0.47845 0.644 0.000 0.008 0.072 0.000 0.276
#> SRR1643394     1  0.5019    0.42660 0.620 0.000 0.012 0.072 0.000 0.296
#> SRR1643395     1  0.5157    0.40308 0.608 0.000 0.012 0.084 0.000 0.296
#> SRR1643396     1  0.4708    0.51653 0.664 0.000 0.008 0.068 0.000 0.260
#> SRR1643397     1  0.4856    0.46573 0.640 0.000 0.008 0.072 0.000 0.280
#> SRR1643398     1  0.4957    0.42752 0.624 0.000 0.008 0.076 0.000 0.292
#> SRR1643399     1  0.5067    0.37930 0.604 0.000 0.008 0.080 0.000 0.308
#> SRR1643400     1  0.4591    0.53988 0.680 0.000 0.008 0.064 0.000 0.248
#> SRR1643401     1  0.4970    0.43863 0.624 0.000 0.012 0.068 0.000 0.296
#> SRR1643402     1  0.4737    0.51256 0.664 0.000 0.008 0.072 0.000 0.256
#> SRR1643403     1  0.5216    0.38417 0.600 0.000 0.012 0.088 0.000 0.300
#> SRR1643404     1  0.4892    0.45749 0.632 0.000 0.008 0.072 0.000 0.288
#> SRR1643405     6  0.5461    0.52494 0.360 0.000 0.036 0.056 0.000 0.548
#> SRR1643406     6  0.5561    0.52190 0.356 0.000 0.040 0.060 0.000 0.544
#> SRR1643407     6  0.5501    0.52857 0.352 0.000 0.040 0.056 0.000 0.552
#> SRR1643408     6  0.5461    0.52494 0.360 0.000 0.036 0.056 0.000 0.548
#> SRR1643409     6  0.5419    0.49777 0.376 0.000 0.028 0.060 0.000 0.536
#> SRR1643410     6  0.5408    0.52010 0.364 0.000 0.032 0.056 0.000 0.548
#> SRR1643411     6  0.5511    0.52404 0.356 0.000 0.040 0.056 0.000 0.548
#> SRR1643412     6  0.5461    0.52006 0.360 0.000 0.036 0.056 0.000 0.548
#> SRR1643413     6  0.5511    0.52404 0.356 0.000 0.040 0.056 0.000 0.548
#> SRR1643414     6  0.5530    0.50915 0.364 0.000 0.040 0.056 0.000 0.540
#> SRR1643415     6  0.5559    0.52580 0.352 0.000 0.044 0.056 0.000 0.548
#> SRR1643416     6  0.5511    0.52404 0.356 0.000 0.040 0.056 0.000 0.548
#> SRR1643417     6  0.5511    0.52404 0.356 0.000 0.040 0.056 0.000 0.548
#> SRR1643418     4  0.0767    0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643419     4  0.0767    0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643420     4  0.0767    0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643421     4  0.0767    0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643422     4  0.0951    0.86257 0.004 0.000 0.008 0.968 0.000 0.020
#> SRR1643423     4  0.0881    0.86256 0.008 0.000 0.008 0.972 0.000 0.012
#> SRR1643424     4  0.0767    0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643425     4  0.0767    0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643426     4  0.0767    0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643427     4  0.0767    0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643428     4  0.0767    0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643429     4  0.0862    0.86198 0.004 0.000 0.008 0.972 0.000 0.016
#> SRR1643430     4  0.0508    0.86289 0.000 0.000 0.004 0.984 0.000 0.012
#> SRR1643431     4  0.0767    0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643432     4  0.0653    0.86384 0.004 0.000 0.004 0.980 0.000 0.012
#> SRR1643433     4  0.0508    0.86289 0.000 0.000 0.004 0.984 0.000 0.012
#> SRR1643434     4  0.0653    0.86384 0.004 0.000 0.004 0.980 0.000 0.012
#> SRR1643435     4  0.0653    0.86384 0.004 0.000 0.004 0.980 0.000 0.012
#> SRR1643436     4  0.0653    0.86384 0.004 0.000 0.004 0.980 0.000 0.012
#> SRR1643437     4  0.0653    0.86384 0.004 0.000 0.004 0.980 0.000 0.012
#> SRR1643438     4  0.0767    0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643439     4  0.0767    0.86291 0.004 0.000 0.008 0.976 0.000 0.012
#> SRR1643440     4  0.0508    0.86289 0.000 0.000 0.004 0.984 0.000 0.012
#> SRR1643441     4  0.0653    0.86384 0.004 0.000 0.004 0.980 0.000 0.012
#> SRR1643442     4  0.0653    0.86384 0.004 0.000 0.004 0.980 0.000 0.012
#> SRR1643443     2  0.1501    0.95486 0.000 0.924 0.000 0.000 0.076 0.000
#> SRR1643444     2  0.1327    0.95807 0.000 0.936 0.000 0.000 0.064 0.000
#> SRR1643445     2  0.1387    0.95723 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643446     2  0.1327    0.95807 0.000 0.936 0.000 0.000 0.064 0.000
#> SRR1643447     2  0.1556    0.95370 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643448     2  0.1556    0.95370 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643449     2  0.1501    0.95486 0.000 0.924 0.000 0.000 0.076 0.000
#> SRR1643450     2  0.1387    0.95717 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643451     2  0.1387    0.95723 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643452     2  0.1501    0.95486 0.000 0.924 0.000 0.000 0.076 0.000
#> SRR1643453     2  0.1387    0.95723 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643454     2  0.1501    0.95486 0.000 0.924 0.000 0.000 0.076 0.000
#> SRR1643455     2  0.1444    0.95592 0.000 0.928 0.000 0.000 0.072 0.000
#> SRR1643456     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643457     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643458     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643459     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643460     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643461     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643462     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643463     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643464     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643466     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643467     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643468     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643469     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643470     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643471     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643472     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643473     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643474     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643475     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643477     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643478     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643479     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643480     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643481     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643482     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643483     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643484     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643485     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643486     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643487     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643488     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643489     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643490     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643491     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643492     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643493     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643494     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643495     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643496     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643497     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643498     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643499     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643500     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643501     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643502     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643503     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643504     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643505     2  0.0146    0.96540 0.000 0.996 0.000 0.000 0.004 0.000
#> SRR1643506     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643507     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643508     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643509     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643510     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643511     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643512     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643513     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643531     2  0.1387    0.95710 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643532     2  0.1267    0.95854 0.000 0.940 0.000 0.000 0.060 0.000
#> SRR1643533     2  0.1267    0.95854 0.000 0.940 0.000 0.000 0.060 0.000
#> SRR1643534     2  0.1387    0.95710 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643535     2  0.1387    0.95710 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643536     2  0.1501    0.95486 0.000 0.924 0.000 0.000 0.076 0.000
#> SRR1643537     2  0.1327    0.95793 0.000 0.936 0.000 0.000 0.064 0.000
#> SRR1643538     2  0.1327    0.95793 0.000 0.936 0.000 0.000 0.064 0.000
#> SRR1643539     2  0.1387    0.95710 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643540     2  0.1327    0.95793 0.000 0.936 0.000 0.000 0.064 0.000
#> SRR1643541     2  0.1387    0.95710 0.000 0.932 0.000 0.000 0.068 0.000
#> SRR1643542     2  0.1444    0.95592 0.000 0.928 0.000 0.000 0.072 0.000
#> SRR1643543     2  0.1327    0.95793 0.000 0.936 0.000 0.000 0.064 0.000
#> SRR1643544     2  0.1556    0.95370 0.000 0.920 0.000 0.000 0.080 0.000
#> SRR1643514     2  0.2092    0.93350 0.000 0.876 0.000 0.000 0.124 0.000
#> SRR1643515     2  0.1957    0.93955 0.000 0.888 0.000 0.000 0.112 0.000
#> SRR1643516     2  0.2092    0.93350 0.000 0.876 0.000 0.000 0.124 0.000
#> SRR1643517     2  0.2048    0.93642 0.000 0.880 0.000 0.000 0.120 0.000
#> SRR1643518     2  0.2048    0.93579 0.000 0.880 0.000 0.000 0.120 0.000
#> SRR1643519     2  0.2092    0.93350 0.000 0.876 0.000 0.000 0.124 0.000
#> SRR1643520     2  0.2003    0.93796 0.000 0.884 0.000 0.000 0.116 0.000
#> SRR1643521     2  0.2092    0.93350 0.000 0.876 0.000 0.000 0.124 0.000
#> SRR1643522     2  0.2092    0.93350 0.000 0.876 0.000 0.000 0.124 0.000
#> SRR1643523     2  0.2092    0.93350 0.000 0.876 0.000 0.000 0.124 0.000
#> SRR1643524     2  0.2135    0.93112 0.000 0.872 0.000 0.000 0.128 0.000
#> SRR1643525     2  0.2003    0.93796 0.000 0.884 0.000 0.000 0.116 0.000
#> SRR1643526     2  0.2092    0.93350 0.000 0.876 0.000 0.000 0.124 0.000
#> SRR1643527     2  0.2092    0.93350 0.000 0.876 0.000 0.000 0.124 0.000
#> SRR1643528     2  0.2003    0.93796 0.000 0.884 0.000 0.000 0.116 0.000
#> SRR1643529     2  0.2178    0.92861 0.000 0.868 0.000 0.000 0.132 0.000
#> SRR1643530     2  0.2003    0.93796 0.000 0.884 0.000 0.000 0.116 0.000
#> SRR1643545     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643546     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643547     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643548     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643549     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643550     2  0.0260    0.96455 0.000 0.992 0.000 0.000 0.008 0.000
#> SRR1643551     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643552     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643553     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643554     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643555     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643556     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643558     2  0.0000    0.96618 0.000 1.000 0.000 0.000 0.000 0.000
#> SRR1643559     2  0.1814    0.94588 0.000 0.900 0.000 0.000 0.100 0.000
#> SRR1643560     2  0.1863    0.94467 0.000 0.896 0.000 0.000 0.104 0.000
#> SRR1643561     2  0.1863    0.94467 0.000 0.896 0.000 0.000 0.104 0.000
#> SRR1643562     2  0.1863    0.94467 0.000 0.896 0.000 0.000 0.104 0.000
#> SRR1643563     2  0.1765    0.94694 0.000 0.904 0.000 0.000 0.096 0.000
#> SRR1643564     2  0.1863    0.94428 0.000 0.896 0.000 0.000 0.104 0.000
#> SRR1643565     2  0.1765    0.94694 0.000 0.904 0.000 0.000 0.096 0.000
#> SRR1643566     2  0.1863    0.94467 0.000 0.896 0.000 0.000 0.104 0.000
#> SRR1643567     2  0.1814    0.94588 0.000 0.900 0.000 0.000 0.100 0.000
#> SRR1643568     2  0.1863    0.94467 0.000 0.896 0.000 0.000 0.104 0.000
#> SRR1643569     2  0.1863    0.94467 0.000 0.896 0.000 0.000 0.104 0.000
#> SRR1643570     2  0.1863    0.94467 0.000 0.896 0.000 0.000 0.104 0.000
#> SRR1643571     2  0.1863    0.94467 0.000 0.896 0.000 0.000 0.104 0.000
#> SRR1643572     2  0.1863    0.94467 0.000 0.896 0.000 0.000 0.104 0.000

Heatmaps for the consensus matrix. It visualizes the probability of two samples to be in a same group.

consensus_heatmap(res, k = 2)

plot of chunk tab-ATC-NMF-consensus-heatmap-1

consensus_heatmap(res, k = 3)

plot of chunk tab-ATC-NMF-consensus-heatmap-2

consensus_heatmap(res, k = 4)

plot of chunk tab-ATC-NMF-consensus-heatmap-3

consensus_heatmap(res, k = 5)

plot of chunk tab-ATC-NMF-consensus-heatmap-4

consensus_heatmap(res, k = 6)

plot of chunk tab-ATC-NMF-consensus-heatmap-5

Heatmaps for the membership of samples in all partitions to see how consistent they are:

membership_heatmap(res, k = 2)

plot of chunk tab-ATC-NMF-membership-heatmap-1

membership_heatmap(res, k = 3)

plot of chunk tab-ATC-NMF-membership-heatmap-2

membership_heatmap(res, k = 4)

plot of chunk tab-ATC-NMF-membership-heatmap-3

membership_heatmap(res, k = 5)

plot of chunk tab-ATC-NMF-membership-heatmap-4

membership_heatmap(res, k = 6)

plot of chunk tab-ATC-NMF-membership-heatmap-5

As soon as we have had the classes for columns, we can look for signatures which are significantly different between classes which can be candidate marks for certain classes. Following are the heatmaps for signatures.

Signature heatmaps where rows are scaled:

get_signatures(res, k = 2)

plot of chunk tab-ATC-NMF-get-signatures-1

get_signatures(res, k = 3)

plot of chunk tab-ATC-NMF-get-signatures-2

get_signatures(res, k = 4)

plot of chunk tab-ATC-NMF-get-signatures-3

get_signatures(res, k = 5)

plot of chunk tab-ATC-NMF-get-signatures-4

get_signatures(res, k = 6)

plot of chunk tab-ATC-NMF-get-signatures-5

Signature heatmaps where rows are not scaled:

get_signatures(res, k = 2, scale_rows = FALSE)

plot of chunk tab-ATC-NMF-get-signatures-no-scale-1

get_signatures(res, k = 3, scale_rows = FALSE)

plot of chunk tab-ATC-NMF-get-signatures-no-scale-2

get_signatures(res, k = 4, scale_rows = FALSE)

plot of chunk tab-ATC-NMF-get-signatures-no-scale-3

get_signatures(res, k = 5, scale_rows = FALSE)

plot of chunk tab-ATC-NMF-get-signatures-no-scale-4

get_signatures(res, k = 6, scale_rows = FALSE)

plot of chunk tab-ATC-NMF-get-signatures-no-scale-5

Compare the overlap of signatures from different k:

compare_signatures(res)

plot of chunk ATC-NMF-signature_compare

get_signature() returns a data frame invisibly. TO get the list of signatures, the function call should be assigned to a variable explicitly. In following code, if plot argument is set to FALSE, no heatmap is plotted while only the differential analysis is performed.

# code only for demonstration
tb = get_signature(res, k = ..., plot = FALSE)

An example of the output of tb is:

#>   which_row         fdr    mean_1    mean_2 scaled_mean_1 scaled_mean_2 km
#> 1        38 0.042760348  8.373488  9.131774    -0.5533452     0.5164555  1
#> 2        40 0.018707592  7.106213  8.469186    -0.6173731     0.5762149  1
#> 3        55 0.019134737 10.221463 11.207825    -0.6159697     0.5749050  1
#> 4        59 0.006059896  5.921854  7.869574    -0.6899429     0.6439467  1
#> 5        60 0.018055526  8.928898 10.211722    -0.6204761     0.5791110  1
#> 6        98 0.009384629 15.714769 14.887706     0.6635654    -0.6193277  2
...

The columns in tb are:

  1. which_row: row indices corresponding to the input matrix.
  2. fdr: FDR for the differential test.
  3. mean_x: The mean value in group x.
  4. scaled_mean_x: The mean value in group x after rows are scaled.
  5. km: Row groups if k-means clustering is applied to rows.

UMAP plot which shows how samples are separated.

dimension_reduction(res, k = 2, method = "UMAP")

plot of chunk tab-ATC-NMF-dimension-reduction-1

dimension_reduction(res, k = 3, method = "UMAP")

plot of chunk tab-ATC-NMF-dimension-reduction-2

dimension_reduction(res, k = 4, method = "UMAP")

plot of chunk tab-ATC-NMF-dimension-reduction-3

dimension_reduction(res, k = 5, method = "UMAP")

plot of chunk tab-ATC-NMF-dimension-reduction-4

dimension_reduction(res, k = 6, method = "UMAP")

plot of chunk tab-ATC-NMF-dimension-reduction-5

Following heatmap shows how subgroups are split when increasing k:

collect_classes(res)

plot of chunk ATC-NMF-collect-classes

If matrix rows can be associated to genes, consider to use functional_enrichment(res, ...) to perform function enrichment for the signature genes. See this vignette for more detailed explanations.

Session info

sessionInfo()
#> R version 3.6.0 (2019-04-26)
#> Platform: x86_64-pc-linux-gnu (64-bit)
#> Running under: CentOS Linux 7 (Core)
#> 
#> Matrix products: default
#> BLAS:   /usr/lib64/libblas.so.3.4.2
#> LAPACK: /usr/lib64/liblapack.so.3.4.2
#> 
#> locale:
#>  [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C               LC_TIME=en_GB.UTF-8       
#>  [4] LC_COLLATE=en_GB.UTF-8     LC_MONETARY=en_GB.UTF-8    LC_MESSAGES=en_GB.UTF-8   
#>  [7] LC_PAPER=en_GB.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
#> [10] LC_TELEPHONE=C             LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C       
#> 
#> attached base packages:
#> [1] grid      stats     graphics  grDevices utils     datasets  methods   base     
#> 
#> other attached packages:
#> [1] genefilter_1.66.0    ComplexHeatmap_2.3.1 markdown_1.1         knitr_1.26          
#> [5] GetoptLong_0.1.7     cola_1.3.2          
#> 
#> loaded via a namespace (and not attached):
#>  [1] circlize_0.4.8       shape_1.4.4          xfun_0.11            slam_0.1-46         
#>  [5] lattice_0.20-38      splines_3.6.0        colorspace_1.4-1     vctrs_0.2.0         
#>  [9] stats4_3.6.0         blob_1.2.0           XML_3.98-1.20        survival_2.44-1.1   
#> [13] rlang_0.4.2          pillar_1.4.2         DBI_1.0.0            BiocGenerics_0.30.0 
#> [17] bit64_0.9-7          RColorBrewer_1.1-2   matrixStats_0.55.0   stringr_1.4.0       
#> [21] GlobalOptions_0.1.1  evaluate_0.14        memoise_1.1.0        Biobase_2.44.0      
#> [25] IRanges_2.18.3       parallel_3.6.0       AnnotationDbi_1.46.1 highr_0.8           
#> [29] Rcpp_1.0.3           xtable_1.8-4         backports_1.1.5      S4Vectors_0.22.1    
#> [33] annotate_1.62.0      skmeans_0.2-11       bit_1.1-14           microbenchmark_1.4-7
#> [37] brew_1.0-6           impute_1.58.0        rjson_0.2.20         png_0.1-7           
#> [41] digest_0.6.23        stringi_1.4.3        polyclip_1.10-0      clue_0.3-57         
#> [45] tools_3.6.0          bitops_1.0-6         magrittr_1.5         eulerr_6.0.0        
#> [49] RCurl_1.95-4.12      RSQLite_2.1.4        tibble_2.1.3         cluster_2.1.0       
#> [53] crayon_1.3.4         pkgconfig_2.0.3      zeallot_0.1.0        Matrix_1.2-17       
#> [57] xml2_1.2.2           httr_1.4.1           R6_2.4.1             mclust_5.4.5        
#> [61] compiler_3.6.0